Nonlinear system for dumping objects. More...
#include <DumpObjectsNonlinearSystem.h>
Public Member Functions | |
DumpObjectsNonlinearSystem (FEProblemBase &problem, const std::string &name) | |
virtual NonlinearSolver< Number > * | nonlinearSolver () override |
virtual void | solve () override |
Solve the system (using libMesh magic) More... | |
virtual void | stopSolve (const ExecFlagType &) override |
Quit the current solve as soon as possible. More... | |
virtual bool | converged () override |
Returns the convergence state. More... | |
virtual NumericVector< Number > & | RHS () override |
virtual SNES | getSNES () override |
virtual unsigned int | getCurrentNonlinearIterationNumber () override |
virtual void | setupFiniteDifferencedPreconditioner () override |
virtual void | attachPreconditioner (Preconditioner< Number > *) override |
Attach a customized preconditioner that requires physics knowledge. More... | |
void | residualAndJacobianTogether () override |
Call this method if you want the residual and Jacobian to be computed simultaneously. More... | |
virtual void | init () override |
Initialize the system. More... | |
bool | computedScalingJacobian () const |
virtual void | turnOffJacobian () |
Turn off the Jacobian (must be called before equation system initialization) More... | |
virtual void | restoreSolutions () override |
Restore current solutions (call after your solve failed) More... | |
virtual bool | computingInitialResidual () |
Returns true if this system is currently computing the initial residual for a solve. More... | |
virtual void | initialSetup () override |
Setup Functions. More... | |
virtual void | timestepSetup () override |
virtual void | customSetup (const ExecFlagType &exec_type) override |
virtual void | residualSetup () override |
virtual void | jacobianSetup () override |
void | setupFieldDecomposition () |
bool | haveFiniteDifferencedPreconditioner () const |
bool | haveFieldSplitPreconditioner () const |
void | addTimeIntegrator (const std::string &type, const std::string &name, InputParameters ¶meters) override |
Add a time integrator. More... | |
virtual void | addTimeIntegrator (const std::string &, const std::string &, InputParameters &) |
virtual void | addTimeIntegrator (std::shared_ptr< TimeIntegrator >) |
virtual void | addTimeIntegrator (std::shared_ptr< TimeIntegrator >) |
void | addDotVectors () |
Add u_dot, u_dotdot, u_dot_old and u_dotdot_old vectors if requested by the time integrator. More... | |
virtual void | addKernel (const std::string &kernel_name, const std::string &name, InputParameters ¶meters) |
Adds a kernel. More... | |
virtual void | addNodalKernel (const std::string &kernel_name, const std::string &name, InputParameters ¶meters) |
Adds a NodalKernel. More... | |
void | addScalarKernel (const std::string &kernel_name, const std::string &name, InputParameters ¶meters) |
Adds a scalar kernel. More... | |
void | addBoundaryCondition (const std::string &bc_name, const std::string &name, InputParameters ¶meters) |
Adds a boundary condition. More... | |
void | addConstraint (const std::string &c_name, const std::string &name, InputParameters ¶meters) |
Adds a Constraint. More... | |
void | addDiracKernel (const std::string &kernel_name, const std::string &name, InputParameters ¶meters) |
Adds a Dirac kernel. More... | |
void | addDGKernel (std::string dg_kernel_name, const std::string &name, InputParameters ¶meters) |
Adds a DG kernel. More... | |
void | addInterfaceKernel (std::string interface_kernel_name, const std::string &name, InputParameters ¶meters) |
Adds an interface kernel. More... | |
void | addDamper (const std::string &damper_name, const std::string &name, InputParameters ¶meters) |
Adds a damper. More... | |
void | addSplit (const std::string &split_name, const std::string &name, InputParameters ¶meters) |
Adds a split. More... | |
std::shared_ptr< Split > | getSplit (const std::string &name) |
Retrieves a split by name. More... | |
void | zeroVectorForResidual (const std::string &vector_name) |
void | setInitialSolution () |
void | setConstraintSecondaryValues (NumericVector< Number > &solution, bool displaced) |
Sets the value of constrained variables in the solution vector. More... | |
void | constraintResiduals (NumericVector< Number > &residual, bool displaced) |
Add residual contributions from Constraints. More... | |
void | computeResidualTag (NumericVector< Number > &residual, TagID tag_id) |
Computes residual for a given tag. More... | |
void | computeResidualTags (const std::set< TagID > &tags) |
Form multiple tag-associated residual vectors for all the given tags. More... | |
void | computeResidualAndJacobianTags (const std::set< TagID > &vector_tags, const std::set< TagID > &matrix_tags) |
Form possibly multiple tag-associated vectors and matrices. More... | |
void | computeResidualAndJacobianInternal (const std::set< TagID > &vector_tags, const std::set< TagID > &matrix_tags) |
Compute residual and Jacobian from contributions not related to constraints, such as nodal boundary conditions. More... | |
void | computeResidual (NumericVector< Number > &residual, TagID tag_id) |
Form a residual vector for a given tag. More... | |
void | addImplicitGeometricCouplingEntries (GeometricSearchData &geom_search_data) |
Adds entries to the Jacobian in the correct positions for couplings coming from dofs being coupled that are related geometrically (i.e. More... | |
void | constraintJacobians (bool displaced) |
Add jacobian contributions from Constraints. More... | |
void | computeJacobianTags (const std::set< TagID > &tags) |
Computes multiple (tag associated) Jacobian matricese. More... | |
bool | computeScaling () |
Method used to obtain scaling factors for variables. More... | |
void | computeJacobian (SparseMatrix< Number > &jacobian, const std::set< TagID > &tags) |
Associate jacobian to systemMatrixTag, and then form a matrix for all the tags. More... | |
void | computeJacobian (SparseMatrix< Number > &jacobian) |
Take all tags in the system, and form a matrix for all tags in the system. More... | |
void | computeJacobianBlocks (std::vector< JacobianBlock *> &blocks) |
Computes several Jacobian blocks simultaneously, summing their contributions into smaller preconditioning matrices. More... | |
void | computeJacobianBlocks (std::vector< JacobianBlock *> &blocks, const std::set< TagID > &tags) |
Real | computeDamping (const NumericVector< Number > &solution, const NumericVector< Number > &update) |
Compute damping. More... | |
void | computeTimeDerivatives (bool jacobian_calculation=false) |
Computes the time derivative vector. More... | |
void | onTimestepBegin () |
Called at the beginning of the time step. More... | |
virtual void | subdomainSetup (SubdomainID subdomain, THREAD_ID tid) |
Called from assembling when we hit a new subdomain. More... | |
virtual void | subdomainSetup () |
virtual void | subdomainSetup () |
virtual void | setSolution (const NumericVector< Number > &soln) |
void | overwriteNodeFace (NumericVector< Number > &soln) |
Called from explicit time stepping to overwrite boundary positions (explicit dynamics). More... | |
void | updateActive (THREAD_ID tid) |
Update active objects of Warehouses owned by NonlinearSystemBase. More... | |
virtual void | setSolutionUDot (const NumericVector< Number > &udot) |
Set transient term used by residual and Jacobian evaluation. More... | |
virtual void | setSolutionUDotDot (const NumericVector< Number > &udotdot) |
Set transient term used by residual and Jacobian evaluation. More... | |
NumericVector< Number > * | solutionUDot () override |
const NumericVector< Number > * | solutionUDot () const override |
NumericVector< Number > * | solutionUDotDot () override |
const NumericVector< Number > * | solutionUDotDot () const override |
NumericVector< Number > * | solutionUDotOld () override |
const NumericVector< Number > * | solutionUDotOld () const override |
NumericVector< Number > * | solutionUDotDotOld () override |
const NumericVector< Number > * | solutionUDotDotOld () const override |
NumericVector< Number > & | getResidualTimeVector () |
Return a numeric vector that is associated with the time tag. More... | |
NumericVector< Number > & | getResidualNonTimeVector () |
Return a numeric vector that is associated with the nontime tag. More... | |
NumericVector< Number > & | residualVector (TagID tag) |
Return a residual vector that is associated with the residual tag. More... | |
const NumericVector< Number > *const & | currentSolution () const override |
The solution vector that is currently being operated on. More... | |
virtual void | serializeSolution () |
virtual NumericVector< Number > & | serializedSolution () override |
Returns a reference to a serialized version of the solution vector for this subproblem. More... | |
virtual NumericVector< Number > & | residualCopy () override |
virtual NumericVector< Number > & | residualGhosted () override |
virtual void | augmentSparsity (SparsityPattern::Graph &sparsity, std::vector< dof_id_type > &n_nz, std::vector< dof_id_type > &n_oz) override |
Will modify the sparsity pattern to add logical geometric connections. More... | |
void | setPreconditioner (std::shared_ptr< MoosePreconditioner > pc) |
Sets a preconditioner. More... | |
MoosePreconditioner const * | getPreconditioner () const |
void | useFiniteDifferencedPreconditioner (bool use=true) |
If called with true this system will use a finite differenced form of the Jacobian as the preconditioner. More... | |
void | setDecomposition (const std::vector< std::string > &decomposition) |
If called with a single string, it is used as the name of a the top-level decomposition split. More... | |
void | useFieldSplitPreconditioner (bool use=true) |
If called with true this system will use a field split preconditioner matrix. More... | |
void | addImplicitGeometricCouplingEntriesToJacobian (bool add=true) |
If called with true this will add entries into the jacobian to link together degrees of freedom that are found to be related through the geometric search system. More... | |
void | assembleConstraintsSeparately (bool separately=true) |
Indicates whether to assemble residual and Jacobian after each constraint application. More... | |
void | setupDampers () |
Setup damping stuff (called before we actually start) More... | |
void | reinitIncrementAtQpsForDampers (THREAD_ID tid, const std::set< MooseVariable *> &damped_vars) |
Compute the incremental change in variables at QPs for dampers. More... | |
void | reinitIncrementAtNodeForDampers (THREAD_ID tid, const std::set< MooseVariable *> &damped_vars) |
Compute the incremental change in variables at nodes for dampers. More... | |
unsigned int | nNonlinearIterations () const |
Return the number of non-linear iterations. More... | |
unsigned int | nLinearIterations () const |
Return the number of linear iterations. More... | |
unsigned int | nResidualEvaluations () const |
Return the total number of residual evaluations done so far in this calculation. More... | |
Real | finalNonlinearResidual () const |
Return the final nonlinear residual. More... | |
Real | nonlinearNorm () const |
Return the last nonlinear norm. More... | |
void | printAllVariableNorms (bool state) |
Force the printing of all variable norms after each solve. More... | |
void | debuggingResiduals (bool state) |
void | setPredictor (std::shared_ptr< Predictor > predictor) |
Predictor * | getPredictor () |
void | setPCSide (MooseEnum pcs) |
Moose::PCSideType | getPCSide () |
void | setMooseKSPNormType (MooseEnum kspnorm) |
Moose::MooseKSPNormType | getMooseKSPNormType () |
bool | needBoundaryMaterialOnSide (BoundaryID bnd_id, THREAD_ID tid) const |
Indicated whether this system needs material properties on boundaries. More... | |
bool | needInterfaceMaterialOnSide (BoundaryID bnd_id, THREAD_ID tid) const |
Indicated whether this system needs material properties on interfaces. More... | |
bool | needSubdomainMaterialOnSide (SubdomainID subdomain_id, THREAD_ID tid) const |
Indicates whether this system needs material properties on internal sides. More... | |
bool | doingDG () const |
Getter for _doing_dg. More... | |
bool | hasSaveIn () const |
Weather or not the nonlinear system has save-ins. More... | |
bool | hasDiagSaveIn () const |
Weather or not the nonlinear system has diagonal Jacobian save-ins. More... | |
virtual System & | system () override |
Get the reference to the libMesh system. More... | |
virtual const System & | system () const override |
virtual void | setSolutionUDotOld (const NumericVector< Number > &u_dot_old) |
virtual void | setSolutionUDotDotOld (const NumericVector< Number > &u_dotdot_old) |
virtual void | setPreviousNewtonSolution (const NumericVector< Number > &soln) |
TagID | timeVectorTag () const override |
Ideally, we should not need this API. More... | |
TagID | nonTimeVectorTag () const override |
TagID | residualVectorTag () const override |
TagID | systemMatrixTag () const override |
Return the Matrix Tag ID for System. More... | |
bool | computeScalingOnce () const |
void | computeScalingOnce (bool compute_scaling_once) |
void | autoScalingParam (Real resid_vs_jac_scaling_param) |
Sets the param that indicates the weighting of the residual vs the Jacobian in determining variable scaling parameters. More... | |
void | scalingGroupVariables (const std::vector< std::vector< std::string >> &scaling_group_variables) |
void | ignoreVariablesForAutoscaling (const std::vector< std::string > &ignore_variables_for_autoscaling) |
bool | offDiagonalsInAutoScaling () const |
void | offDiagonalsInAutoScaling (bool off_diagonals_in_auto_scaling) |
void | setupDM () |
Setup the PETSc DM object (when appropriate) More... | |
virtual void | reinitNodeFace (const Node *node, BoundaryID bnd_id, THREAD_ID tid) |
Reinit nodal assembly info on a face. More... | |
virtual void | reinitNodeFace (const Node *node, BoundaryID bnd_id, THREAD_ID tid) |
Reinit nodal assembly info on a face. More... | |
unsigned int | number () const |
Gets the number of this system. More... | |
virtual MooseMesh & | mesh () |
virtual const MooseMesh & | mesh () const |
virtual SubProblem & | subproblem () |
virtual const SubProblem & | subproblem () const |
void | applyScalingFactors (const std::vector< Real > &inverse_scaling_factors) |
Applies scaling factors to the system's variables. More... | |
bool | computingScalingJacobian () const |
Whether we are computing an initial Jacobian for automatic variable scaling. More... | |
bool | automaticScaling () const |
Getter for whether we are performing automatic scaling. More... | |
void | automaticScaling (bool automatic_scaling) |
Setter for whether we are performing automatic scaling. More... | |
void | setVerboseFlag (const bool &verbose) |
Sets the verbose flag. More... | |
virtual DofMap & | dofMap () |
Gets writeable reference to the dof map. More... | |
virtual const DofMap & | dofMap () const |
Gets const reference to the dof map. More... | |
virtual void | initializeObjects () |
Called only once, just before the solve begins so objects can do some precalculations. More... | |
virtual void | update (bool update_libmesh_system=true) |
Update the system (doing libMesh magic) More... | |
virtual void | copyOldSolutions () |
Shifts the solutions backwards in time. More... | |
NumericVector< Number > & | solution () |
const NumericVector< Number > & | solution () const |
NumericVector< Number > & | solutionOld () |
const NumericVector< Number > & | solutionOld () const |
NumericVector< Number > & | solutionOlder () |
const NumericVector< Number > & | solutionOlder () const |
virtual const NumericVector< Number > * | solutionPreviousNewton () const |
virtual NumericVector< Number > * | solutionPreviousNewton () |
virtual void | initSolutionState () |
Initializes the solution state. More... | |
virtual NumericVector< Number > & | solutionState (const unsigned int state, Moose::SolutionIterationType iteration_type=Moose::SolutionIterationType::Time) |
Get a state of the solution (0 = current, 1 = old, 2 = older, etc). More... | |
virtual const NumericVector< Number > & | solutionState (const unsigned int state, Moose::SolutionIterationType iteration_type=Moose::SolutionIterationType::Time) const |
Get a state of the solution (0 = current, 1 = old, 2 = older, etc). More... | |
virtual void | needSolutionState (const unsigned int state, Moose::SolutionIterationType iteration_type=Moose::SolutionIterationType::Time) |
Registers that the solution state state is needed. More... | |
virtual bool | hasSolutionState (const unsigned int state, Moose::SolutionIterationType iteration_type=Moose::SolutionIterationType::Time) const |
Whether or not the system has the solution state (0 = current, 1 = old, 2 = older, etc). More... | |
virtual Number & | duDotDu () |
virtual const Number & | duDotDu () const |
virtual Number & | duDotDotDu () |
virtual const Number & | duDotDotDu () const |
virtual void | saveOldSolutions () |
Save the old and older solutions. More... | |
virtual void | restoreOldSolutions () |
Restore the old and older solutions when the saved solutions present. More... | |
bool | hasVector (const std::string &tag_name) const |
Check if the named vector exists in the system. More... | |
virtual bool | hasVector (TagID tag_id) const |
Check if the tagged vector exists in the system. More... | |
virtual std::set< TagID > | defaultVectorTags () const |
Get the default vector tags associated with this system. More... | |
virtual std::set< TagID > | defaultMatrixTags () const |
Get the default matrix tags associted with this system. More... | |
virtual void | associateVectorToTag (NumericVector< Number > &vec, TagID tag) |
Associate a vector for a given tag. More... | |
virtual void | disassociateVectorFromTag (NumericVector< Number > &vec, TagID tag) |
Disassociate a given vector from a given tag. More... | |
virtual void | disassociateVectorFromTag (TagID tag) |
Disassociate any vector that is associated with a given tag. More... | |
virtual void | disassociateDefaultVectorTags () |
Disassociate the vectors associated with the default vector tags of this system. More... | |
virtual bool | hasMatrix (TagID tag) const |
Check if the tagged matrix exists in the system. More... | |
virtual SparseMatrix< Number > & | getMatrix (TagID tag) |
Get a raw SparseMatrix. More... | |
virtual const SparseMatrix< Number > & | getMatrix (TagID tag) const |
Get a raw SparseMatrix. More... | |
virtual void | activeAllMatrixTags () |
Make all exsiting matrices ative. More... | |
virtual void | activeMatrixTag (TagID tag) |
Active a matrix for tag. More... | |
virtual bool | matrixTagActive (TagID tag) const |
If or not a matrix tag is active. More... | |
virtual void | deactiveMatrixTag (TagID tag) |
deactive a matrix for tag More... | |
virtual void | deactiveAllMatrixTags () |
Make matrices inactive. More... | |
void | closeTaggedMatrices (const std::set< TagID > &tags) |
Close all matrices associated the tags. More... | |
void | flushTaggedMatrices (const std::set< TagID > &tags) |
flushes all matrices associated to tags. More... | |
virtual void | associateMatrixToTag (SparseMatrix< Number > &matrix, TagID tag) |
Associate a matrix to a tag. More... | |
virtual void | disassociateMatrixFromTag (SparseMatrix< Number > &matrix, TagID tag) |
Disassociate a matrix from a tag. More... | |
virtual void | disassociateMatrixFromTag (TagID tag) |
Disassociate any matrix that is associated with a given tag. More... | |
virtual void | disassociateDefaultMatrixTags () |
Disassociate the matrices associated with the default matrix tags of this system. More... | |
virtual void | augmentSendList (std::vector< dof_id_type > &send_list) |
Will modify the send_list to add all of the extra ghosted dofs for this system. More... | |
virtual void | addVariable (const std::string &var_type, const std::string &var_name, InputParameters ¶meters) |
Canonical method for adding a variable. More... | |
virtual bool | isArrayVariable (const std::string &var_name) const |
If a variable is an array variable. More... | |
virtual bool | isScalarVariable (unsigned int var_name) const |
MooseVariableFieldBase & | getVariable (THREAD_ID tid, const std::string &var_name) const |
Gets a reference to a variable of with specified name. More... | |
MooseVariableFieldBase & | getVariable (THREAD_ID tid, unsigned int var_number) const |
Gets a reference to a variable with specified number. More... | |
template<typename T > | |
MooseVariableFE< T > & | getFieldVariable (THREAD_ID tid, const std::string &var_name) |
Gets a reference to a variable of with specified name. More... | |
template<typename T > | |
MooseVariableFE< T > & | getFieldVariable (THREAD_ID tid, unsigned int var_number) |
Gets a reference to a variable with specified number. More... | |
template<typename T > | |
MooseVariableField< T > & | getActualFieldVariable (THREAD_ID tid, const std::string &var_name) |
Returns a field variable pointer - this includes finite volume variables. More... | |
template<typename T > | |
MooseVariableField< T > & | getActualFieldVariable (THREAD_ID tid, unsigned int var_number) |
Returns a field variable pointer - this includes finite volume variables. More... | |
template<typename T > | |
MooseVariableFV< T > & | getFVVariable (THREAD_ID tid, const std::string &var_name) |
Return a finite volume variable. More... | |
virtual MooseVariableScalar & | getScalarVariable (THREAD_ID tid, const std::string &var_name) const |
Gets a reference to a scalar variable with specified number. More... | |
virtual MooseVariableScalar & | getScalarVariable (THREAD_ID tid, unsigned int var_number) const |
Gets a reference to a variable with specified number. More... | |
virtual const std::set< SubdomainID > * | getVariableBlocks (unsigned int var_number) |
Get the block where a variable of this system is defined. More... | |
virtual unsigned int | nVariables () const |
Get the number of variables in this system. More... | |
unsigned int | nFieldVariables () const |
Get the number of field variables in this system. More... | |
unsigned int | nFVVariables () const |
Get the number of finite volume variables in this system. More... | |
std::size_t | getMaxVarNDofsPerElem () const |
Gets the maximum number of dofs used by any one variable on any one element. More... | |
std::size_t | getMaxVarNDofsPerNode () const |
Gets the maximum number of dofs used by any one variable on any one node. More... | |
void | assignMaxVarNDofsPerElem (std::size_t max_dofs) |
assign the maximum element dofs More... | |
void | assignMaxVarNDofsPerNode (std::size_t max_dofs) |
assign the maximum node dofs More... | |
virtual void | addVariableToZeroOnResidual (std::string var_name) |
Adds this variable to the list of variables to be zeroed during each residual evaluation. More... | |
virtual void | addVariableToZeroOnJacobian (std::string var_name) |
Adds this variable to the list of variables to be zeroed during each Jacobian evaluation. More... | |
virtual void | zeroVariables (std::vector< std::string > &vars_to_be_zeroed) |
Zero out the solution for the list of variables passed in. More... | |
virtual void | zeroVariablesForResidual () |
Zero out the solution for the variables that were registered as needing to have their solutions zeroed on out on residual evaluation by a call to addVariableToZeroOnResidual() More... | |
virtual void | zeroVariablesForJacobian () |
Zero out the solution for the variables that were registered as needing to have their solutions zeroed on out on Jacobian evaluation by a call to addVariableToZeroOnResidual() More... | |
virtual Order | getMinQuadratureOrder () |
Get minimal quadrature order needed for integrating variables in this system. More... | |
virtual void | prepare (THREAD_ID tid) |
Prepare the system for use. More... | |
virtual void | prepareFace (THREAD_ID tid, bool resize_data) |
Prepare the system for use on sides. More... | |
virtual void | prepareNeighbor (THREAD_ID tid) |
Prepare the system for use. More... | |
virtual void | prepareLowerD (THREAD_ID tid) |
Prepare the system for use for lower dimensional elements. More... | |
virtual void | reinitElem (const Elem *elem, THREAD_ID tid) |
Reinit an element assembly info. More... | |
virtual void | reinitElemFace (const Elem *elem, unsigned int side, BoundaryID bnd_id, THREAD_ID tid) |
Reinit assembly info for a side of an element. More... | |
virtual void | reinitNeighborFace (const Elem *elem, unsigned int side, BoundaryID bnd_id, THREAD_ID tid) |
Compute the values of the variables at all the current points. More... | |
virtual void | reinitNeighbor (const Elem *elem, THREAD_ID tid) |
Compute the values of the variables at all the current points. More... | |
virtual void | reinitLowerD (THREAD_ID tid) |
Compute the values of the variables on the lower dimensional element. More... | |
virtual void | reinitNode (const Node *node, THREAD_ID tid) |
Reinit nodal assembly info. More... | |
virtual void | reinitNodes (const std::vector< dof_id_type > &nodes, THREAD_ID tid) |
Reinit variables at a set of nodes. More... | |
virtual void | reinitNodesNeighbor (const std::vector< dof_id_type > &nodes, THREAD_ID tid) |
Reinit variables at a set of neighbor nodes. More... | |
virtual void | reinitScalars (THREAD_ID tid, bool reinit_for_derivative_reordering=false) |
Reinit scalar varaibles. More... | |
virtual void | addVariableToCopy (const std::string &dest_name, const std::string &source_name, const std::string ×tep) |
Add info about variable that will be copied. More... | |
const std::vector< MooseVariableFieldBase * > & | getVariables (THREAD_ID tid) |
const std::vector< MooseVariableScalar * > & | getScalarVariables (THREAD_ID tid) |
const std::set< SubdomainID > & | getSubdomainsForVar (unsigned int var_number) const |
const std::set< SubdomainID > & | getSubdomainsForVar (const std::string &var_name) const |
Get the block where a variable of this system is defined. More... | |
void | removeVector (const std::string &name) |
Remove a vector from the system with the given name. More... | |
void | removeVector (TagID tag_id) |
Remove a solution length vector from the system with the specified TagID. More... | |
NumericVector< Number > & | addVector (const std::string &vector_name, const bool project, const ParallelType type) |
Adds a solution length vector to the system. More... | |
NumericVector< Number > & | addVector (TagID tag, const bool project, const ParallelType type) |
Adds a solution length vector to the system with the specified TagID. More... | |
void | closeTaggedVector (const TagID tag) |
Close vector with the given tag. More... | |
void | closeTaggedVectors (const std::set< TagID > &tags) |
Close all vectors for given tags. More... | |
void | zeroTaggedVector (const TagID tag) |
Zero vector with the given tag. More... | |
void | zeroTaggedVectors (const std::set< TagID > &tags) |
Zero all vectors for given tags. More... | |
void | setVariableGlobalDoFs (const std::string &var_name) |
set all the global dof indices for a variable More... | |
const std::vector< dof_id_type > & | getVariableGlobalDoFs () |
Get the global dof indices of a variable, this needs to be called after the indices have been set by setVariableGlobalDoFs More... | |
SparseMatrix< Number > & | addMatrix (TagID tag) |
Adds a matrix with a given tag. More... | |
void | removeMatrix (TagID tag) |
Removes a matrix with a given tag. More... | |
virtual const std::string & | name () const |
const std::vector< VariableName > & | getVariableNames () const |
void | getStandardFieldVariableNames (std::vector< VariableName > &std_field_variables) const |
unsigned int | getMaxVariableNumber () const |
Returns the maximum number of all variables on the system. More... | |
virtual void | computeVariables (const NumericVector< Number > &) |
void | copyVars (ExodusII_IO &io) |
virtual void | copySolutionsBackwards () |
Copy current solution into old and older. More... | |
TimeIntegrator * | getTimeIntegrator () |
const TimeIntegrator * | getTimeIntegrator () const |
std::shared_ptr< TimeIntegrator > | getSharedTimeIntegrator () |
bool | hasVarCopy () const |
Whether or not there are variables to be restarted from an Exodus mesh file. More... | |
void | addScalingVector () |
Add the scaling factor vector to the system. More... | |
bool | solutionStatesInitialized () const |
Whether or not the solution states have been initialized via initSolutionState() More... | |
void | clearAllDofIndices () |
Clear all dof indices from moose variables. More... | |
void | setActiveVariableCoupleableVectorTags (const std::set< TagID > &vtags, THREAD_ID tid) |
Set the active vector tags for the variables. More... | |
void | setActiveScalarVariableCoupleableVectorTags (const std::set< TagID > &vtags, THREAD_ID tid) |
Set the active vector tags for the scalar variables. More... | |
Moose::VarKindType | varKind () const |
const Parallel::Communicator & | comm () const |
processor_id_type | n_processors () const |
processor_id_type | processor_id () const |
PerfGraph & | perfGraph () |
Get the PerfGraph. More... | |
void | checkKernelCoverage (const std::set< SubdomainID > &mesh_subdomains) const |
bool | containsTimeKernel () |
MooseObjectTagWarehouse< KernelBase > & | getKernelWarehouse () |
Access functions to Warehouses from outside NonlinearSystemBase. More... | |
MooseObjectTagWarehouse< DGKernelBase > & | getDGKernelWarehouse () |
MooseObjectTagWarehouse< InterfaceKernelBase > & | getInterfaceKernelWarehouse () |
MooseObjectTagWarehouse< DiracKernelBase > & | getDiracKernelWarehouse () |
MooseObjectTagWarehouse< IntegratedBCBase > & | getIntegratedBCWarehouse () |
const MooseObjectTagWarehouse< IntegratedBCBase > & | getIntegratedBCWarehouse () const |
Return the IntegratedBCBase warehouse. More... | |
const MooseObjectWarehouse< ElementDamper > & | getElementDamperWarehouse () const |
const MooseObjectWarehouse< NodalDamper > & | getNodalDamperWarehouse () const |
const ConstraintWarehouse & | getConstraintWarehouse () const |
const MooseObjectTagWarehouse< NodalBCBase > & | getNodalBCWarehouse () const |
Return the NodalBCBase warehouse. More... | |
virtual NumericVector< Number > & | getVector (const std::string &name) |
Get a raw NumericVector by name. More... | |
virtual const NumericVector< Number > & | getVector (const std::string &name) const |
virtual NumericVector< Number > & | getVector (TagID tag) |
Get a raw NumericVector by tag. More... | |
virtual const NumericVector< Number > & | getVector (TagID tag) const |
virtual bool | hasVariable (const std::string &var_name) const |
Query a system for a variable. More... | |
virtual bool | hasScalarVariable (const std::string &var_name) const |
Static Public Member Functions | |
static InputParameters | validParams () |
Public Attributes | |
unsigned int | _num_residual_evaluations |
FEProblemBase & | _fe_problem |
System & | _sys |
Real | _last_nl_rnorm |
Real | _initial_residual_before_preset_bcs |
Real | _initial_residual_after_preset_bcs |
std::vector< unsigned int > | _current_l_its |
unsigned int | _current_nl_its |
bool | _compute_initial_residual_before_preset_bcs |
const ConsoleStream | _console |
An instance of helper class to write streams to the Console objects. More... | |
Protected Member Functions | |
void | computeScalingJacobian () override |
Compute a "Jacobian" for automatic scaling purposes. More... | |
void | computeScalingResidual () override |
Compute a "residual" for automatic scaling purposes. More... | |
void | computeResidualInternal (const std::set< TagID > &tags) |
Compute the residual for a given tag. More... | |
void | computeNodalBCs (NumericVector< Number > &residual) |
Enforces nodal boundary conditions. More... | |
void | computeNodalBCs (NumericVector< Number > &residual, const std::set< TagID > &tags) |
Form a residual for BCs that at least has one of the given tags. More... | |
void | computeNodalBCs (const std::set< TagID > &tags) |
Form multiple tag-associated residual vectors for the given tags. More... | |
void | computeNodalBCsResidualAndJacobian () |
compute the residual and Jacobian for nodal boundary conditions More... | |
void | computeJacobianInternal (const std::set< TagID > &tags) |
Form multiple matrices for all the tags. More... | |
void | computeDiracContributions (const std::set< TagID > &tags, bool is_jacobian) |
void | computeScalarKernelsJacobians (const std::set< TagID > &tags) |
void | enforceNodalConstraintsResidual (NumericVector< Number > &residual) |
Enforce nodal constraints. More... | |
void | enforceNodalConstraintsJacobian () |
void | mortarConstraints (Moose::ComputeType compute_type, const std::set< TagID > &vector_tags, const std::set< TagID > &matrix_tags) |
Do mortar constraint residual/jacobian computations. More... | |
void | assembleScalingVector () |
Assemble the numeric vector of scaling factors such that it can be used during assembly of the system matrix. More... | |
virtual void | postAddResidualObject (ResidualObject &) |
Called after any ResidualObject-derived objects are added to the system. More... | |
NumericVector< Number > & | solutionInternal () const override |
Internal getter for solution owned by libMesh. More... | |
void | reinitNodeFace (const Node &secondary_node, const BoundaryID secondary_boundary, const PenetrationInfo &info, const bool displaced) |
Reinitialize quantities such as variables, residuals, Jacobians, materials for node-face constraints. More... | |
bool | preSolve () |
Perform some steps to get ready for the solver. More... | |
void | getNodeDofs (dof_id_type node_id, std::vector< dof_id_type > &dofs) |
PerfID | registerTimedSection (const std::string §ion_name, const unsigned int level) const |
Call to register a named section for timing. More... | |
PerfID | registerTimedSection (const std::string §ion_name, const unsigned int level, const std::string &live_message, const bool print_dots=true) const |
Call to register a named section for timing. More... | |
std::string | timedSectionName (const std::string §ion_name) const |
Protected Attributes | |
NumericVector< Number > * | _dummy |
const NumericVector< Number > * | _current_solution |
solution vector from nonlinear solver More... | |
NumericVector< Number > * | _residual_ghosted |
ghosted form of the residual More... | |
std::unique_ptr< NumericVector< Number > > | _serialized_solution |
Serialized version of the solution vector, or nullptr if a serialized solution is not needed. More... | |
std::unique_ptr< NumericVector< Number > > | _residual_copy |
Copy of the residual vector, or nullptr if a copy is not needed. More... | |
NumericVector< Number > * | _u_dot |
solution vector for u^dot More... | |
NumericVector< Number > * | _u_dotdot |
solution vector for u^dotdot More... | |
NumericVector< Number > * | _u_dot_old |
old solution vector for u^dot More... | |
NumericVector< Number > * | _u_dotdot_old |
old solution vector for u^dotdot More... | |
Number | _du_dot_du |
\( {du^dot}\over{du} \) More... | |
Number | _du_dotdot_du |
\( {du^dotdot}\over{du} \) More... | |
TagID | _Re_time_tag |
Tag for time contribution residual. More... | |
std::set< TagID > | _nl_vector_tags |
Vector tags to temporarily store all tags associated with the current system. More... | |
std::set< TagID > | _nl_matrix_tags |
Matrix tags to temporarily store all tags associated with the current system. More... | |
NumericVector< Number > * | _Re_time |
residual vector for time contributions More... | |
TagID | _Re_non_time_tag |
Tag for non-time contribution residual. More... | |
NumericVector< Number > * | _Re_non_time |
residual vector for non-time contributions More... | |
TagID | _Re_tag |
Used for the residual vector from PETSc. More... | |
TagID | _Ke_non_time_tag |
Tag for non-time contribution Jacobian. More... | |
TagID | _Ke_system_tag |
Tag for system contribution Jacobian. More... | |
MooseObjectTagWarehouse< DiracKernelBase > | _dirac_kernels |
Dirac Kernel storage for each thread. More... | |
MooseObjectWarehouse< ElementDamper > | _element_dampers |
Element Dampers for each thread. More... | |
MooseObjectWarehouse< NodalDamper > | _nodal_dampers |
Nodal Dampers for each thread. More... | |
MooseObjectWarehouse< GeneralDamper > | _general_dampers |
General Dampers. More... | |
MooseObjectTagWarehouse< NodalKernelBase > | _nodal_kernels |
NodalKernels for each thread. More... | |
MooseObjectWarehouseBase< Split > | _splits |
Decomposition splits. More... | |
ConstraintWarehouse | _constraints |
Constraints storage object. More... | |
NumericVector< Number > * | _increment_vec |
increment vector More... | |
std::shared_ptr< MoosePreconditioner > | _preconditioner |
Preconditioner. More... | |
Moose::PCSideType | _pc_side |
Preconditioning side. More... | |
Moose::MooseKSPNormType | _ksp_norm |
KSP norm type. More... | |
bool | _use_finite_differenced_preconditioner |
Whether or not to use a finite differenced preconditioner. More... | |
MatFDColoring | _fdcoloring |
bool | _have_decomposition |
Whether or not the system can be decomposed into splits. More... | |
std::string | _decomposition_split |
Name of the top-level split of the decomposition. More... | |
bool | _use_field_split_preconditioner |
Whether or not to use a FieldSplitPreconditioner matrix based on the decomposition. More... | |
bool | _add_implicit_geometric_coupling_entries_to_jacobian |
Whether or not to add implicit geometric couplings to the Jacobian for FDP. More... | |
bool | _assemble_constraints_separately |
Whether or not to assemble the residual and Jacobian after the application of each constraint. More... | |
bool | _need_residual_ghosted |
Whether or not a ghosted copy of the residual needs to be made. More... | |
bool | _debugging_residuals |
true if debugging residuals More... | |
bool | _doing_dg |
true if DG is active (optimization reasons) More... | |
std::vector< std::string > | _vecs_to_zero_for_residual |
vectors that will be zeroed before a residual computation More... | |
unsigned int | _n_iters |
unsigned int | _n_linear_iters |
unsigned int | _n_residual_evaluations |
Total number of residual evaluations that have been performed. More... | |
Real | _final_residual |
std::shared_ptr< Predictor > | _predictor |
If predictor is active, this is non-NULL. More... | |
bool | _computing_initial_residual |
bool | _print_all_var_norms |
bool | _has_save_in |
If there is any Kernel or IntegratedBC having save_in. More... | |
bool | _has_diag_save_in |
If there is any Kernel or IntegratedBC having diag_save_in. More... | |
bool | _has_nodalbc_save_in |
If there is a nodal BC having save_in. More... | |
bool | _has_nodalbc_diag_save_in |
If there is a nodal BC having diag_save_in. More... | |
bool | _computed_scaling |
Flag used to indicate whether we have already computed the scaling Jacobian. More... | |
bool | _compute_scaling_once |
Whether the scaling factors should only be computed once at the beginning of the simulation through an extra Jacobian evaluation. More... | |
Real | _resid_vs_jac_scaling_param |
The param that indicates the weighting of the residual vs the Jacobian in determining variable scaling parameters. More... | |
std::vector< std::vector< std::string > > | _scaling_group_variables |
A container of variable groupings that can be used in scaling calculations. More... | |
std::vector< bool > | _variable_autoscaled |
Container to hold flag if variable is to participate in autoscaling. More... | |
std::vector< std::string > | _ignore_variables_for_autoscaling |
A container for variables that do not partipate in autoscaling. More... | |
bool | _off_diagonals_in_auto_scaling |
Whether to include off diagonals when determining automatic scaling factors. More... | |
std::unique_ptr< DiagonalMatrix< Number > > | _scaling_matrix |
A diagonal matrix used for computing scaling. More... | |
SubProblem & | _subproblem |
MooseApp & | _app |
Factory & | _factory |
MooseMesh & | _mesh |
std::string | _name |
The name of this system. More... | |
std::vector< VariableWarehouse > | _vars |
Variable warehouses (one for each thread) More... | |
std::map< unsigned int, std::set< SubdomainID > > | _var_map |
Map of variables (variable id -> array of subdomains where it lives) More... | |
unsigned int | _max_var_number |
Maximum variable number. More... | |
std::vector< std::string > | _vars_to_be_zeroed_on_residual |
std::vector< std::string > | _vars_to_be_zeroed_on_jacobian |
std::vector< NumericVector< Number > * > | _tagged_vectors |
Tagged vectors (pointer) More... | |
std::vector< SparseMatrix< Number > * > | _tagged_matrices |
Tagged matrices (pointer) More... | |
std::vector< bool > | _matrix_tag_active_flags |
Active flags for tagged matrices. More... | |
NumericVector< Real > * | _saved_old |
NumericVector< Real > * | _saved_older |
NumericVector< Real > * | _saved_dot_old |
NumericVector< Real > * | _saved_dotdot_old |
Moose::VarKindType | _var_kind |
default kind of variables in this system More... | |
std::vector< VarCopyInfo > | _var_to_copy |
size_t | _max_var_n_dofs_per_elem |
Maximum number of dofs for any one variable on any one element. More... | |
size_t | _max_var_n_dofs_per_node |
Maximum number of dofs for any one variable on any one node. More... | |
std::shared_ptr< TimeIntegrator > | _time_integrator |
Time integrator. More... | |
std::vector< std::vector< MooseVariableFieldBase * > > | _numbered_vars |
Map variable number to its pointer. More... | |
bool | _automatic_scaling |
Whether to automatically scale the variables. More... | |
bool | _verbose |
True if printing out additional information. More... | |
bool | _solution_states_initialized |
Whether or not the solution states have been initialized. More... | |
std::vector< dof_id_type > | _var_all_dof_indices |
Container for the dof indices of a given variable. More... | |
const Parallel::Communicator & | _communicator |
MooseApp & | _pg_moose_app |
The MooseApp that owns the PerfGraph. More... | |
const std::string | _prefix |
A prefix to use for all sections. More... | |
MooseObjectTagWarehouse< KernelBase > | _kernels |
MooseObjectTagWarehouse< ScalarKernelBase > | _scalar_kernels |
MooseObjectTagWarehouse< DGKernelBase > | _dg_kernels |
MooseObjectTagWarehouse< InterfaceKernelBase > | _interface_kernels |
MooseObjectTagWarehouse< IntegratedBCBase > | _integrated_bcs |
MooseObjectTagWarehouse< NodalBCBase > | _nodal_bcs |
MooseObjectWarehouse< DirichletBCBase > | _preset_nodal_bcs |
MooseObjectWarehouse< ADDirichletBCBase > | _ad_preset_nodal_bcs |
Nonlinear system for dumping objects.
Definition at line 24 of file DumpObjectsNonlinearSystem.h.
DumpObjectsNonlinearSystem::DumpObjectsNonlinearSystem | ( | FEProblemBase & | problem, |
const std::string & | name | ||
) |
Definition at line 13 of file DumpObjectsNonlinearSystem.C.
|
virtualinherited |
Make all exsiting matrices ative.
Definition at line 1103 of file SystemBase.C.
Referenced by NonlinearSystemBase::computeJacobianInternal(), NonlinearSystemBase::computeResidualAndJacobianInternal(), and NonlinearSystemBase::computeResidualTags().
Active a matrix for tag.
Definition at line 1068 of file SystemBase.C.
|
inherited |
Adds a boundary condition.
bc_name | The type of the boundary condition |
name | The name of the boundary condition |
parameters | Boundary condition parameters |
Definition at line 536 of file NonlinearSystemBase.C.
|
inherited |
Adds a Constraint.
c_name | The type of the constraint |
name | The name of the constraint |
parameters | Constraint parameters |
Definition at line 620 of file NonlinearSystemBase.C.
|
inherited |
Adds a damper.
damper_name | The type of the damper |
name | The name of the damper |
parameters | Damper parameters |
Definition at line 687 of file NonlinearSystemBase.C.
|
inherited |
Adds a DG kernel.
dg_kernel_name | The type of the DG kernel |
name | The name of the DG kernel |
parameters | DG kernel parameters |
Definition at line 647 of file NonlinearSystemBase.C.
|
inherited |
Adds a Dirac kernel.
kernel_name | The type of the dirac kernel |
name | The name of the Dirac kernel |
parameters | Dirac kernel parameters |
Definition at line 633 of file NonlinearSystemBase.C.
|
inherited |
Add u_dot, u_dotdot, u_dot_old and u_dotdot_old vectors if requested by the time integrator.
Definition at line 203 of file NonlinearSystemBase.C.
|
inherited |
Adds entries to the Jacobian in the correct positions for couplings coming from dofs being coupled that are related geometrically (i.e.
near each other across a gap).
Definition at line 2208 of file NonlinearSystemBase.C.
Referenced by NonlinearSystemBase::computeJacobianInternal().
|
inlineinherited |
If called with true this will add entries into the jacobian to link together degrees of freedom that are found to be related through the geometric search system.
These entries are really only used by the Finite Difference Preconditioner and the constraint system right now.
Definition at line 470 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::addConstraint(), and FiniteDifferencePreconditioner::FiniteDifferencePreconditioner().
|
inherited |
Adds an interface kernel.
interface_kernel_name | The type of the interface kernel |
name | The name of the interface kernel |
parameters | interface kernel parameters |
Definition at line 667 of file NonlinearSystemBase.C.
|
virtualinherited |
Adds a kernel.
kernel_name | The type of the kernel |
name | The name of the kernel |
parameters | Kernel parameters |
Reimplemented in MooseEigenSystem.
Definition at line 485 of file NonlinearSystemBase.C.
Adds a matrix with a given tag.
tag_name | The name of the tag |
Definition at line 559 of file SystemBase.C.
|
virtualinherited |
Adds a NodalKernel.
kernel_name | The type of the nodal kernel |
name | The name of the kernel |
parameters | Kernel parameters |
Definition at line 505 of file NonlinearSystemBase.C.
|
inherited |
Adds a scalar kernel.
kernel_name | The type of the kernel |
name | The name of the kernel |
parameters | Kernel parameters |
Definition at line 525 of file NonlinearSystemBase.C.
|
inherited |
Add the scaling factor vector to the system.
Definition at line 1474 of file SystemBase.C.
Referenced by MooseVariableBase::initialSetup().
|
inherited |
Adds a split.
split_name | The type of the split |
name | The name of the split |
parameters | Split parameters |
Definition at line 715 of file NonlinearSystemBase.C.
|
overridevirtualinherited |
Add a time integrator.
type | Type of the integrator |
name | The name of the integrator |
parameters | Integrator params |
Reimplemented from SystemBase.
Definition at line 474 of file NonlinearSystemBase.C.
|
inlineinherited |
Definition at line 861 of file SystemBase.h.
|
inlineinherited |
Definition at line 867 of file SystemBase.h.
|
inlinevirtualinherited |
|
virtualinherited |
Canonical method for adding a variable.
var_type | the type of the variable, e.g. MooseVariableScalar |
var_name | the variable name, e.g. 'u' |
params | the InputParameters from which to construct the variable |
Reimplemented in AuxiliarySystem.
Definition at line 708 of file SystemBase.C.
Referenced by AuxiliarySystem::addVariable().
|
virtualinherited |
Add info about variable that will be copied.
dest_name | Name of the nodal variable being used for copying into (name is from the exodusII file) |
source_name | Name of the nodal variable being used for copying from (name is from the exodusII file) |
timestep | Timestep in the file being used |
Definition at line 1143 of file SystemBase.C.
Referenced by CopyNodalVarsAction::act(), and PhysicsBase::copyVariablesFromMesh().
|
virtualinherited |
Adds this variable to the list of variables to be zeroed during each Jacobian evaluation.
var_name | The name of the variable to be zeroed. |
Reimplemented in DisplacedSystem.
Definition at line 169 of file SystemBase.C.
Referenced by ADDGKernel::ADDGKernel(), DisplacedSystem::addVariableToZeroOnJacobian(), ADIntegratedBCTempl< T >::ADIntegratedBCTempl(), ADKernelTempl< T >::ADKernelTempl(), ArrayDGKernel::ArrayDGKernel(), ArrayIntegratedBC::ArrayIntegratedBC(), ArrayKernel::ArrayKernel(), DGKernel::DGKernel(), IntegratedBC::IntegratedBC(), InterfaceKernelTempl< T >::InterfaceKernelTempl(), Kernel::Kernel(), NodalBC::NodalBC(), and NodalKernel::NodalKernel().
|
virtualinherited |
Adds this variable to the list of variables to be zeroed during each residual evaluation.
var_name | The name of the variable to be zeroed. |
Reimplemented in DisplacedSystem.
Definition at line 163 of file SystemBase.C.
Referenced by ADDGKernel::ADDGKernel(), DisplacedSystem::addVariableToZeroOnResidual(), ADIntegratedBCTempl< T >::ADIntegratedBCTempl(), ADKernelTempl< T >::ADKernelTempl(), ArrayDGKernel::ArrayDGKernel(), ArrayIntegratedBC::ArrayIntegratedBC(), ArrayKernel::ArrayKernel(), DGKernel::DGKernel(), IntegratedBC::IntegratedBC(), InterfaceKernelTempl< T >::InterfaceKernelTempl(), Kernel::Kernel(), NodalBC::NodalBC(), and NodalKernel::NodalKernel().
|
inherited |
Adds a solution length vector to the system.
vector_name | The name of the vector. |
project | Whether or not to project this vector when doing mesh refinement. If the vector is just going to be recomputed then there is no need to project it. |
type | What type of parallel vector. This is usually either PARALLEL or GHOSTED. GHOSTED is needed if you are going to be accessing off-processor entries. The ghosting pattern is the same as the solution vector. |
Definition at line 597 of file SystemBase.C.
Referenced by AuxiliarySystem::addDotVectors(), NonlinearSystemBase::addDotVectors(), SystemBase::addScalingVector(), SecantSolve::allocateStorage(), SteffensenSolve::allocateStorage(), PicardSolve::allocateStorage(), AStableDirk4::AStableDirk4(), ExplicitTimeIntegrator::ExplicitTimeIntegrator(), NonlinearSystemBase::getResidualNonTimeVector(), NonlinearSystemBase::getResidualTimeVector(), CentralDifference::initialSetup(), LStableDirk3::LStableDirk3(), LStableDirk4::LStableDirk4(), SystemBase::needSolutionState(), NonlinearSystemBase::residualGhosted(), and SystemBase::saveOldSolutions().
|
inherited |
Adds a solution length vector to the system with the specified TagID.
tag_name | The name of the tag |
project | Whether or not to project this vector when doing mesh refinement. If the vector is just going to be recomputed then there is no need to project it. |
type | What type of parallel vector. This is usually either PARALLEL or GHOSTED. GHOSTED is needed if you are going to be accessing off-processor entries. The ghosting pattern is the same as the solution vector. |
Definition at line 607 of file SystemBase.C.
|
inherited |
Applies scaling factors to the system's variables.
inverse_scaling_factors | A vector containing the inverse of each variable's scaling factor, e.g. 1 / scaling_factor |
Definition at line 1424 of file SystemBase.C.
Referenced by NonlinearSystemBase::computeScaling().
|
inlineinherited |
Indicates whether to assemble residual and Jacobian after each constraint application.
When true, enables "transitive" constraint application: subsequent constraints can use prior constraints' results.
Definition at line 480 of file NonlinearSystemBase.h.
|
protectedinherited |
Assemble the numeric vector of scaling factors such that it can be used during assembly of the system matrix.
Definition at line 4008 of file NonlinearSystemBase.C.
Referenced by NonlinearSystemBase::computeScaling(), and NonlinearSystemBase::preSolve().
|
inlineinherited |
assign the maximum element dofs
Definition at line 575 of file SystemBase.h.
|
inlineinherited |
assign the maximum node dofs
Definition at line 580 of file SystemBase.h.
|
virtualinherited |
Associate a matrix to a tag.
Reimplemented in DisplacedSystem.
Definition at line 1025 of file SystemBase.C.
Referenced by SystemBase::addMatrix(), DisplacedSystem::associateMatrixToTag(), NonlinearSystemBase::computeJacobian(), FEProblemBase::computeJacobianInternal(), FEProblemBase::computeJacobianTag(), and FEProblemBase::computeResidualAndJacobian().
Associate a vector for a given tag.
Reimplemented in DisplacedSystem.
Definition at line 930 of file SystemBase.C.
Referenced by SystemBase::addVector(), DisplacedSystem::associateVectorToTag(), NonlinearSystemBase::computeNodalBCs(), FEProblemBase::computeResidual(), FEProblemBase::computeResidualAndJacobian(), FEProblemBase::computeResidualInternal(), NonlinearSystemBase::computeResidualTag(), FEProblemBase::computeResidualTag(), FEProblemBase::computeResidualType(), and NonlinearSystemBase::setSolution().
|
inlineoverridevirtual |
Attach a customized preconditioner that requires physics knowledge.
Generic preconditioners should be implemented in PETSc, instead.
Implements NonlinearSystemBase.
Definition at line 38 of file DumpObjectsNonlinearSystem.h.
|
virtualinherited |
Will modify the send_list to add all of the extra ghosted dofs for this system.
Reimplemented in DisplacedSystem.
Definition at line 441 of file SystemBase.C.
Referenced by DisplacedSystem::augmentSendList(), and extraSendList().
|
overridevirtualinherited |
Will modify the sparsity pattern to add logical geometric connections.
Implements SystemBase.
Definition at line 3373 of file NonlinearSystemBase.C.
|
inlineinherited |
Getter for whether we are performing automatic scaling.
Definition at line 117 of file SystemBase.h.
Referenced by SubProblem::automaticScaling().
|
inlineinherited |
Setter for whether we are performing automatic scaling.
automatic_scaling | A boolean representing whether we are performing automatic scaling |
Definition at line 123 of file SystemBase.h.
Sets the param that indicates the weighting of the residual vs the Jacobian in determining variable scaling parameters.
A value of 1 indicates pure residual-based scaling. A value of 0 indicates pure Jacobian-based scaling
Definition at line 663 of file NonlinearSystemBase.h.
Referenced by FEProblemSolve::FEProblemSolve().
|
inherited |
System Integrity Checks
Definition at line 3534 of file NonlinearSystemBase.C.
|
inherited |
Clear all dof indices from moose variables.
Definition at line 1529 of file SystemBase.C.
Referenced by SubProblem::clearAllDofIndices().
Close all matrices associated the tags.
Definition at line 1009 of file SystemBase.C.
Referenced by NonlinearSystemBase::computeJacobianInternal(), and NonlinearSystemBase::computeResidualAndJacobianTags().
Close vector with the given tag.
Definition at line 638 of file SystemBase.C.
Referenced by SystemBase::closeTaggedVectors().
Close all vectors for given tags.
Definition at line 657 of file SystemBase.C.
Referenced by NonlinearSystemBase::computeResidualAndJacobianTags(), and NonlinearSystemBase::computeResidualTags().
|
inherited |
Compute damping.
solution | The trail solution vector |
update | The incremental update to the solution vector |
Definition at line 3221 of file NonlinearSystemBase.C.
Referenced by FEProblemBase::computeDamping().
|
protectedinherited |
Definition at line 3300 of file NonlinearSystemBase.C.
Referenced by NonlinearSystemBase::computeJacobianInternal(), and NonlinearSystemBase::computeResidualInternal().
|
inlineinherited |
Definition at line 73 of file NonlinearSystemBase.h.
|
inherited |
Associate jacobian to systemMatrixTag, and then form a matrix for all the tags.
Definition at line 3071 of file NonlinearSystemBase.C.
Referenced by NonlinearSystemBase::computeJacobian().
Take all tags in the system, and form a matrix for all tags in the system.
Definition at line 3058 of file NonlinearSystemBase.C.
|
inherited |
Computes several Jacobian blocks simultaneously, summing their contributions into smaller preconditioning matrices.
Used by Physics-based preconditioning
blocks | The blocks to fill in (JacobianBlock is defined in ComputeJacobianBlocksThread) |
Definition at line 3100 of file NonlinearSystemBase.C.
Referenced by EigenProblem::computeJacobianBlocks(), and FEProblemBase::computeJacobianBlocks().
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inherited |
Definition at line 3112 of file NonlinearSystemBase.C.
|
protectedinherited |
Form multiple matrices for all the tags.
Users should not call this func directly.
Definition at line 2716 of file NonlinearSystemBase.C.
Referenced by NonlinearSystemBase::computeJacobianTags().
Computes multiple (tag associated) Jacobian matricese.
Definition at line 3081 of file NonlinearSystemBase.C.
Referenced by NonlinearSystemBase::computeJacobian(), and FEProblemBase::computeJacobianTags().
Enforces nodal boundary conditions.
The boundary condition will be implemented in the residual using all the tags in the system.
Definition at line 1972 of file NonlinearSystemBase.C.
Referenced by NonlinearSystemBase::computeNodalBCs(), and NonlinearSystemBase::computeResidualTags().
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protectedinherited |
Form a residual for BCs that at least has one of the given tags.
Definition at line 1986 of file NonlinearSystemBase.C.
Form multiple tag-associated residual vectors for the given tags.
Definition at line 1996 of file NonlinearSystemBase.C.
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protectedinherited |
compute the residual and Jacobian for nodal boundary conditions
Definition at line 2049 of file NonlinearSystemBase.C.
Referenced by NonlinearSystemBase::computeResidualAndJacobianTags().
|
inherited |
Form a residual vector for a given tag.
Definition at line 754 of file NonlinearSystemBase.C.
|
inherited |
Compute residual and Jacobian from contributions not related to constraints, such as nodal boundary conditions.
Definition at line 1882 of file NonlinearSystemBase.C.
Referenced by NonlinearSystemBase::computeResidualAndJacobianTags().
|
inherited |
Form possibly multiple tag-associated vectors and matrices.
Definition at line 839 of file NonlinearSystemBase.C.
Referenced by FEProblemBase::computeResidualAndJacobian().
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protectedinherited |
Compute the residual for a given tag.
tags | The tags of kernels for which the residual is to be computed. |
Definition at line 1663 of file NonlinearSystemBase.C.
Referenced by NonlinearSystemBase::computeResidualTags().
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inherited |
Computes residual for a given tag.
residual | Residual is formed in here |
the | tag of kernels for which the residual is to be computed. |
Definition at line 740 of file NonlinearSystemBase.C.
Referenced by NonlinearSystemBase::computeResidual(), and CrankNicolson::init().
Form multiple tag-associated residual vectors for all the given tags.
Definition at line 762 of file NonlinearSystemBase.C.
Referenced by NonlinearSystemBase::computeResidualTag(), and FEProblemBase::computeResidualTags().
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protectedinherited |
Definition at line 2642 of file NonlinearSystemBase.C.
Referenced by NonlinearSystemBase::computeJacobianInternal().
|
inherited |
Method used to obtain scaling factors for variables.
Definition at line 3847 of file NonlinearSystemBase.C.
Referenced by NonlinearSystemBase::preSolve().
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inlineoverrideprotectedvirtual |
Compute a "Jacobian" for automatic scaling purposes.
Implements NonlinearSystemBase.
Definition at line 42 of file DumpObjectsNonlinearSystem.h.
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inlineinherited |
Definition at line 652 of file NonlinearSystemBase.h.
Referenced by FEProblemSolve::FEProblemSolve().
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inlineinherited |
Definition at line 653 of file NonlinearSystemBase.h.
|
inlineoverrideprotectedvirtual |
Compute a "residual" for automatic scaling purposes.
Implements NonlinearSystemBase.
Definition at line 43 of file DumpObjectsNonlinearSystem.h.
|
inherited |
Computes the time derivative vector.
Definition at line 1019 of file NonlinearSystemBase.C.
Referenced by FEProblemBase::computeJacobianTags(), and ExplicitSSPRungeKutta::solveStage().
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inlinevirtualinherited |
Definition at line 852 of file SystemBase.h.
|
inlinevirtualinherited |
Returns true if this system is currently computing the initial residual for a solve.
Definition at line 98 of file NonlinearSystemBase.h.
|
inherited |
Whether we are computing an initial Jacobian for automatic variable scaling.
Definition at line 1481 of file SystemBase.C.
Referenced by Assembly::addJacobianBlock(), Assembly::addJacobianBlockNonlocal(), Assembly::addJacobianNeighbor(), Assembly::cacheJacobianBlock(), VectorKernel::computeJacobian(), Kernel::computeJacobian(), EigenKernel::computeJacobian(), and FEProblemBase::computeJacobianTags().
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inherited |
Add jacobian contributions from Constraints.
jacobian | reference to the Jacobian matrix |
displaced | Controls whether to do the displaced Constraints or non-displaced |
Definition at line 2232 of file NonlinearSystemBase.C.
Referenced by NonlinearSystemBase::computeJacobianInternal().
|
inherited |
Add residual contributions from Constraints.
residual | - reference to the residual vector where constraint contributions will be computed |
displaced | Controls whether to do the displaced Constraints or non-displaced |
Definition at line 1290 of file NonlinearSystemBase.C.
Referenced by NonlinearSystemBase::computeResidualInternal().
|
inherited |
Definition at line 3680 of file NonlinearSystemBase.C.
Referenced by Steady::checkIntegrity(), EigenExecutionerBase::checkIntegrity(), and Eigenvalue::checkIntegrity().
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inlineoverridevirtual |
Returns the convergence state.
Implements NonlinearSystemBase.
Definition at line 32 of file DumpObjectsNonlinearSystem.h.
|
virtualinherited |
Shifts the solutions backwards in time.
Definition at line 1254 of file SystemBase.C.
Referenced by EigenExecutionerBase::inversePowerIteration().
|
virtualinherited |
Copy current solution into old and older.
Definition at line 1227 of file SystemBase.C.
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inherited |
Definition at line 1151 of file SystemBase.C.
|
inlineoverridevirtualinherited |
The solution vector that is currently being operated on.
This is typically a ghosted vector that comes in from the Nonlinear solver.
Implements SystemBase.
Definition at line 417 of file NonlinearSystemBase.h.
Referenced by FEProblemBase::computeDamping(), Transient::relativeSolutionDifferenceNorm(), and AB2PredictorCorrector::step().
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overridevirtualinherited |
Reimplemented from SystemBase.
Definition at line 387 of file NonlinearSystemBase.C.
|
virtualinherited |
Make matrices inactive.
Definition at line 1092 of file SystemBase.C.
Referenced by NonlinearSystemBase::computeResidualTags(), and NonlinearSystemBase::setInitialSolution().
deactive a matrix for tag
Definition at line 1080 of file SystemBase.C.
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inlineinherited |
Definition at line 548 of file NonlinearSystemBase.h.
|
inlinevirtualinherited |
Get the default matrix tags associted with this system.
Reimplemented in NonlinearEigenSystem, and DisplacedSystem.
Definition at line 287 of file SystemBase.h.
Referenced by DisplacedSystem::defaultMatrixTags(), NonlinearEigenSystem::defaultMatrixTags(), and SystemBase::disassociateDefaultMatrixTags().
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inlinevirtualinherited |
Get the default vector tags associated with this system.
Reimplemented in NonlinearEigenSystem, and DisplacedSystem.
Definition at line 280 of file SystemBase.h.
Referenced by DisplacedSystem::defaultVectorTags(), NonlinearEigenSystem::defaultVectorTags(), and SystemBase::disassociateDefaultVectorTags().
|
virtualinherited |
Disassociate the matrices associated with the default matrix tags of this system.
Reimplemented in DisplacedSystem.
Definition at line 1059 of file SystemBase.C.
Referenced by DisplacedSystem::disassociateDefaultMatrixTags().
|
virtualinherited |
Disassociate the vectors associated with the default vector tags of this system.
Reimplemented in DisplacedSystem.
Definition at line 964 of file SystemBase.C.
Referenced by DisplacedSystem::disassociateDefaultVectorTags().
|
virtualinherited |
Disassociate a matrix from a tag.
Reimplemented in DisplacedSystem.
Definition at line 1037 of file SystemBase.C.
Referenced by NonlinearSystemBase::computeJacobian(), FEProblemBase::computeJacobianInternal(), FEProblemBase::computeJacobianTag(), FEProblemBase::computeResidualAndJacobian(), SystemBase::disassociateDefaultMatrixTags(), and DisplacedSystem::disassociateMatrixFromTag().
Disassociate any matrix that is associated with a given tag.
Reimplemented in DisplacedSystem.
Definition at line 1048 of file SystemBase.C.
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virtualinherited |
Disassociate a given vector from a given tag.
Reimplemented in DisplacedSystem.
Definition at line 942 of file SystemBase.C.
Referenced by NonlinearSystemBase::computeNodalBCs(), FEProblemBase::computeResidualAndJacobian(), FEProblemBase::computeResidualInternal(), NonlinearSystemBase::computeResidualTag(), FEProblemBase::computeResidualTag(), FEProblemBase::computeResidualType(), SystemBase::disassociateDefaultVectorTags(), DisplacedSystem::disassociateVectorFromTag(), and CentralDifference::initialSetup().
Disassociate any vector that is associated with a given tag.
Reimplemented in DisplacedSystem.
Definition at line 953 of file SystemBase.C.
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virtualinherited |
Gets writeable reference to the dof map.
Definition at line 1131 of file SystemBase.C.
Referenced by NonlinearSystemBase::assembleScalingVector(), MooseApp::attachRelationshipManagers(), SystemBase::augmentSendList(), NonlinearSystemBase::augmentSparsity(), NonlinearSystemBase::computeScaling(), NonlinearSystemBase::findImplicitGeometricCouplingEntries(), Adaptivity::init(), ActivateElementsUserObjectBase::initSolutions(), PNGOutput::makeMeshFunc(), GhostingUserObject::meshChanged(), TableOutput::outputScalarVariables(), Nemesis::outputScalarVariables(), Exodus::outputScalarVariables(), and ElementSubdomainModifier::setOldAndOlderSolutionsForMovedNodes().
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virtualinherited |
|
inherited |
Getter for _doing_dg.
Definition at line 3739 of file NonlinearSystemBase.C.
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inlinevirtualinherited |
Reimplemented in DisplacedSystem.
Definition at line 223 of file SystemBase.h.
Referenced by DisplacedSystem::duDotDotDu(), and MooseVariableScalar::reinit().
|
inlinevirtualinherited |
|
inlinevirtualinherited |
Reimplemented in DisplacedSystem.
Definition at line 222 of file SystemBase.h.
Referenced by DisplacedSystem::duDotDu(), and MooseVariableScalar::reinit().
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inlinevirtualinherited |
|
protectedinherited |
Definition at line 1060 of file NonlinearSystemBase.C.
Referenced by NonlinearSystemBase::computeJacobianInternal().
|
protectedinherited |
Enforce nodal constraints.
Definition at line 1035 of file NonlinearSystemBase.C.
Referenced by NonlinearSystemBase::computeResidualInternal().
|
inlineinherited |
flushes all matrices associated to tags.
Flush assembles the matrix but doesn't shrink memory allocation
Definition at line 1017 of file SystemBase.C.
|
inherited |
Returns a field variable pointer - this includes finite volume variables.
Definition at line 107 of file SystemBase.C.
Referenced by BoundsBase::BoundsBase(), Assembly::copyFaceShapes(), Assembly::copyNeighborShapes(), and Assembly::copyShapes().
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inherited |
Returns a field variable pointer - this includes finite volume variables.
Definition at line 128 of file SystemBase.C.
|
inlineinherited |
Definition at line 606 of file NonlinearSystemBase.h.
|
inlineoverridevirtual |
Implements NonlinearSystemBase.
Definition at line 36 of file DumpObjectsNonlinearSystem.h.
|
inlineinherited |
Definition at line 591 of file NonlinearSystemBase.h.
|
inlineinherited |
Definition at line 596 of file NonlinearSystemBase.h.
|
inlineinherited |
Definition at line 598 of file NonlinearSystemBase.h.
Referenced by ComputeElemDampingThread::onElement(), and ComputeElemDampingThread::printGeneralExecutionInformation().
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inherited |
Gets a reference to a variable of with specified name.
This excludes and cannot return finite volume variables.
tid | Thread id |
var_name | variable name |
Definition at line 100 of file SystemBase.C.
Referenced by Marker::getMarkerValue().
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inherited |
Gets a reference to a variable with specified number.
This excludes and cannot return finite volume variables.
tid | Thread id |
var_number | libMesh variable number |
Definition at line 121 of file SystemBase.C.
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inherited |
Return a finite volume variable.
Definition at line 114 of file SystemBase.C.
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inlineinherited |
Definition at line 597 of file NonlinearSystemBase.h.
Referenced by BoundaryElemIntegrityCheckThread::operator()().
|
inlineinherited |
Return the IntegratedBCBase warehouse.
Definition at line 616 of file NonlinearSystemBase.h.
|
inlineinherited |
Definition at line 592 of file NonlinearSystemBase.h.
|
inlineinherited |
Access functions to Warehouses from outside NonlinearSystemBase.
Definition at line 590 of file NonlinearSystemBase.h.
Referenced by DOFMapOutput::output().
Get a raw SparseMatrix.
Reimplemented in DisplacedSystem.
Definition at line 973 of file SystemBase.C.
Referenced by Assembly::addCachedJacobian(), NonlinearSystemBase::addImplicitGeometricCouplingEntries(), Assembly::addJacobianCoupledVarPair(), Assembly::addJacobianLowerD(), Assembly::addJacobianNeighbor(), Assembly::addJacobianNeighborLowerD(), Assembly::addJacobianNonlocal(), SystemBase::addMatrix(), SystemBase::closeTaggedMatrices(), NonlinearSystemBase::computeJacobianInternal(), FEProblemBase::computeJacobianTags(), FEProblemBase::computeResidualAndJacobian(), NonlinearSystemBase::computeResidualAndJacobianInternal(), NonlinearSystemBase::constraintJacobians(), SystemBase::disassociateMatrixFromTag(), NonlinearSystemBase::enforceNodalConstraintsJacobian(), SystemBase::flushTaggedMatrices(), DisplacedSystem::getMatrix(), MooseVariableScalar::reinit(), Assembly::setCachedJacobian(), and Assembly::zeroCachedJacobian().
Get a raw SparseMatrix.
Reimplemented in DisplacedSystem.
Definition at line 991 of file SystemBase.C.
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inlineinherited |
Returns the maximum number of all variables on the system.
Definition at line 850 of file SystemBase.h.
|
inlineinherited |
Gets the maximum number of dofs used by any one variable on any one element.
Definition at line 563 of file SystemBase.h.
Referenced by Moose::globalDofIndexToDerivative().
|
inlineinherited |
Gets the maximum number of dofs used by any one variable on any one node.
Definition at line 570 of file SystemBase.h.
|
virtualinherited |
Get minimal quadrature order needed for integrating variables in this system.
Reimplemented in AuxiliarySystem.
Definition at line 230 of file SystemBase.C.
|
inlineinherited |
Definition at line 561 of file NonlinearSystemBase.h.
Referenced by Moose::PetscSupport::petscSetDefaultKSPNormType().
|
inlineinherited |
Return the NodalBCBase warehouse.
Definition at line 611 of file NonlinearSystemBase.h.
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inlineinherited |
Definition at line 602 of file NonlinearSystemBase.h.
Referenced by ComputeNodalDampingThread::onNode(), and ComputeNodalDampingThread::printGeneralExecutionInformation().
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protectedinherited |
Definition at line 2086 of file NonlinearSystemBase.C.
Referenced by NonlinearSystemBase::findImplicitGeometricCouplingEntries().
|
inlineinherited |
Definition at line 557 of file NonlinearSystemBase.h.
Referenced by Moose::PetscSupport::petscSetDefaultPCSide().
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inherited |
Definition at line 3506 of file NonlinearSystemBase.C.
Referenced by ConsoleUtils::outputExecutionInformation().
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inlineinherited |
Definition at line 553 of file NonlinearSystemBase.h.
Referenced by AB2PredictorCorrector::estimateTimeError().
|
inherited |
Return a numeric vector that is associated with the nontime tag.
Definition at line 979 of file NonlinearSystemBase.C.
Referenced by PseudoTimestep::currentResidualNorm(), NonlinearSystemBase::NonlinearSystemBase(), and NonlinearSystemBase::residualVector().
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inherited |
Return a numeric vector that is associated with the time tag.
Definition at line 956 of file NonlinearSystemBase.C.
Referenced by NonlinearSystemBase::residualVector().
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virtualinherited |
Gets a reference to a scalar variable with specified number.
tid | Thread id |
var_name | A string which is the name of the variable to get. |
Definition at line 134 of file SystemBase.C.
Referenced by Assembly::addJacobianOffDiagScalar(), ODEKernel::computeOffDiagJacobianScalar(), VectorKernel::computeOffDiagJacobianScalar(), ArrayKernel::computeOffDiagJacobianScalar(), IntegratedBC::computeOffDiagJacobianScalar(), VectorIntegratedBC::computeOffDiagJacobianScalar(), Kernel::computeOffDiagJacobianScalar(), ArrayIntegratedBC::computeOffDiagJacobianScalar(), ScalarLagrangeMultiplier::computeOffDiagJacobianScalar(), MortarScalarBase::computeOffDiagJacobianScalar(), KernelScalarBase::computeOffDiagJacobianScalarLocal(), KernelScalarBase::computeScalarOffDiagJacobianScalar(), MortarScalarBase::computeScalarOffDiagJacobianScalar(), DMMooseSetVariables(), Assembly::init(), ReferenceResidualProblem::initialSetup(), and NonlinearSystemBase::setupScalingData().
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virtualinherited |
Gets a reference to a variable with specified number.
tid | Thread id |
var_number | libMesh variable number |
Definition at line 143 of file SystemBase.C.
|
inlineinherited |
Definition at line 737 of file SystemBase.h.
Referenced by Assembly::addResidualScalar(), ODEKernel::computeJacobian(), ComputeFullJacobianThread::computeOnBoundary(), ComputeFullJacobianThread::computeOnElement(), AuxiliarySystem::computeScalarVars(), Assembly::init(), SystemBase::initSolutionState(), NonlinearThread::onElement(), Assembly::prepareOffDiagScalar(), and Assembly::prepareScalar().
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inlineinherited |
Definition at line 872 of file SystemBase.h.
Referenced by DisplacedProblem::DisplacedProblem().
|
inlineoverridevirtual |
Implements NonlinearSystemBase.
Definition at line 34 of file DumpObjectsNonlinearSystem.h.
|
inherited |
Retrieves a split by name.
name | The name of the split |
Definition at line 724 of file NonlinearSystemBase.C.
Referenced by Split::setup(), and NonlinearSystemBase::setupFieldDecomposition().
|
inherited |
|
inlineinherited |
Definition at line 742 of file SystemBase.h.
Referenced by NonlinearSystemBase::checkKernelCoverage(), and SystemBase::getSubdomainsForVar().
|
inlineinherited |
Get the block where a variable of this system is defined.
var_name | The name of the variable |
Definition at line 753 of file SystemBase.h.
|
inlineinherited |
Definition at line 869 of file SystemBase.h.
Referenced by Transient::endStep(), AB2PredictorCorrector::estimateTimeError(), Transient::getTimeIntegratorName(), MooseVariableData< OutputType >::MooseVariableData(), and Transient::preExecute().
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inlineinherited |
Definition at line 870 of file SystemBase.h.
|
inherited |
Gets a reference to a variable of with specified name.
tid | Thread id |
var_name | variable name |
Definition at line 79 of file SystemBase.C.
Referenced by AdaptivityAction::act(), Assembly::addJacobianBlock(), Assembly::addJacobianBlockNonlocal(), FEProblemBase::addJacobianBlockTags(), Assembly::addJacobianNeighbor(), NonlocalKernel::computeNonlocalOffDiagJacobian(), NonlocalIntegratedBC::computeNonlocalOffDiagJacobian(), Assembly::copyFaceShapes(), Assembly::copyNeighborShapes(), Assembly::copyShapes(), SystemBase::copyVars(), DMMooseSetVariables(), FieldSplitPreconditioner::FieldSplitPreconditioner(), FiniteDifferencePreconditioner::FiniteDifferencePreconditioner(), NodeElemConstraint::getConnectedDofIndices(), NodeFaceConstraint::getConnectedDofIndices(), SystemBase::getSubdomainsForVar(), ResidualObject::getVariable(), SubProblem::getVariableHelper(), Assembly::init(), NodalNormalsPreprocessor::initialize(), ReferenceResidualProblem::initialSetup(), Assembly::initNonlocalCoupling(), PNGOutput::makeMeshFunc(), FEProblemBase::prepare(), Assembly::prepareBlock(), Assembly::prepareBlockNonlocal(), AddPeriodicBCAction::setPeriodicVars(), NonlinearSystemBase::setupScalingData(), UpdateErrorVectorsThread::UpdateErrorVectorsThread(), and VariableCondensationPreconditioner::VariableCondensationPreconditioner().
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inherited |
Gets a reference to a variable with specified number.
tid | Thread id |
var_number | libMesh variable number |
Definition at line 89 of file SystemBase.C.
|
virtualinherited |
Get the block where a variable of this system is defined.
var_number | The number of the variable |
Definition at line 153 of file SystemBase.C.
Referenced by PhysicsBasedPreconditioner::addSystem().
|
inlineinherited |
Get the global dof indices of a variable, this needs to be called after the indices have been set by setVariableGlobalDoFs
Definition at line 825 of file SystemBase.h.
|
inlineinherited |
Definition at line 843 of file SystemBase.h.
Referenced by MooseEigenSystem::buildSystemDoFIndices(), NonlinearSystemBase::checkKernelCoverage(), SystemBase::hasVariable(), SystemBase::isArrayVariable(), AddPeriodicBCAction::setPeriodicVars(), and SingleMatrixPreconditioner::SingleMatrixPreconditioner().
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inlineinherited |
Definition at line 732 of file SystemBase.h.
Referenced by Assembly::addJacobianOffDiagScalar(), Assembly::addResidual(), Assembly::addResidualLower(), Assembly::addResidualNeighbor(), MooseMesh::cacheFaceInfoVariableOwnership(), MooseMesh::cacheFVElementalDoFs(), Assembly::cacheResidual(), Assembly::cacheResidualLower(), Assembly::cacheResidualNeighbor(), ComputeFullJacobianThread::computeOnBoundary(), ComputeFullJacobianThread::computeOnElement(), Assembly::init(), Assembly::initNonlocalCoupling(), SystemBase::initSolutionState(), Assembly::prepareLowerD(), Assembly::prepareNeighbor(), Assembly::prepareOffDiagScalar(), Assembly::prepareResidual(), Assembly::setResidual(), and Assembly::setResidualNeighbor().
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virtualinherited |
Get a raw NumericVector by name.
Get a raw NumericVector with the given name.
Reimplemented in DisplacedSystem.
Definition at line 882 of file SystemBase.C.
Referenced by Assembly::addCachedResiduals(), Assembly::addResidual(), Assembly::addResidualLower(), Assembly::addResidualNeighbor(), Assembly::addResidualScalar(), SystemBase::addVector(), NonlinearSystemBase::assembleScalingVector(), SystemBase::closeTaggedVector(), FEProblemBase::computeBounds(), FEProblemBase::computeNearNullSpace(), FEProblemBase::computeNullSpace(), NonlinearSystemBase::computeResidualAndJacobianTags(), NonlinearSystemBase::computeResidualTags(), CentralDifference::computeTimeDerivatives(), FEProblemBase::computeTransposeNullSpace(), SystemBase::disassociateVectorFromTag(), DisplacedSystem::getVector(), Assembly::hasScalingVector(), SystemBase::needSolutionState(), ReferenceResidualProblem::ReferenceResidualProblem(), MooseVariableScalar::reinit(), SecantSolve::saveVariableValues(), SteffensenSolve::saveVariableValues(), PicardSolve::saveVariableValues(), NonlinearSystemBase::setPreviousNewtonSolution(), TaggingInterface::setResidual(), SystemBase::solutionPreviousNewton(), SystemBase::solutionState(), MultiAppDofCopyTransfer::transfer(), SecantSolve::transformVariables(), SteffensenSolve::transformVariables(), PicardSolve::transformVariables(), and SystemBase::zeroTaggedVector().
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virtualinherited |
Get a raw NumericVector by tag.
Reimplemented in DisplacedSystem.
Definition at line 894 of file SystemBase.C.
Reimplemented in DisplacedSystem.
Definition at line 912 of file SystemBase.C.
|
inlineinherited |
Weather or not the nonlinear system has diagonal Jacobian save-ins.
Definition at line 631 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::computeJacobianInternal().
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inlinevirtualinherited |
Check if the tagged matrix exists in the system.
Reimplemented in DisplacedSystem.
Definition at line 328 of file SystemBase.h.
Referenced by SystemBase::activeAllMatrixTags(), Assembly::addCachedJacobian(), NonlinearSystemBase::addImplicitGeometricCouplingEntries(), Assembly::addJacobianCoupledVarPair(), Assembly::addJacobianLowerD(), Assembly::addJacobianNeighbor(), Assembly::addJacobianNeighborLowerD(), Assembly::addJacobianNonlocal(), SystemBase::addMatrix(), Assembly::cacheJacobian(), Assembly::cacheJacobianBlock(), Assembly::cacheJacobianBlockNonzero(), Assembly::cacheJacobianCoupledVarPair(), Assembly::cacheJacobianMortar(), Assembly::cacheJacobianNeighbor(), Assembly::cacheJacobianNonlocal(), SystemBase::closeTaggedMatrices(), NonlinearSystemBase::computeJacobianInternal(), FEProblemBase::computeJacobianTags(), FEProblemBase::computeResidualAndJacobian(), NonlinearSystemBase::computeResidualAndJacobianInternal(), NonlinearSystemBase::constraintJacobians(), SystemBase::disassociateMatrixFromTag(), NonlinearSystemBase::enforceNodalConstraintsJacobian(), SystemBase::flushTaggedMatrices(), SystemBase::getMatrix(), DisplacedSystem::hasMatrix(), MooseVariableScalar::reinit(), SystemBase::removeMatrix(), Assembly::setCachedJacobian(), and Assembly::zeroCachedJacobian().
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inlineinherited |
Weather or not the nonlinear system has save-ins.
Definition at line 626 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::computeResidualTags().
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virtualinherited |
Definition at line 825 of file SystemBase.C.
Referenced by MortarScalarBase::computeJacobian(), NonlinearSystemBase::computeJacobianInternal(), ComputeFullJacobianThread::computeOnBoundary(), ComputeFullJacobianThread::computeOnElement(), SystemBase::copyVars(), NonlinearEigenSystem::postAddResidualObject(), AddPeriodicBCAction::setPeriodicVars(), and NonlinearSystemBase::setupScalingData().
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inlinevirtualinherited |
Whether or not the system has the solution state (0 = current, 1 = old, 2 = older, etc).
Reimplemented in DisplacedSystem.
Definition at line 1004 of file SystemBase.h.
Referenced by PointwiseRenormalizeVector::execute(), PointwiseRenormalizeVector::finalize(), DisplacedSystem::hasSolutionState(), SystemBase::needSolutionState(), SystemBase::restoreSolutions(), ElementSubdomainModifier::setOldAndOlderSolutionsForMovedNodes(), and SystemBase::solutionState().
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inlineinherited |
Whether or not there are variables to be restarted from an Exodus mesh file.
Definition at line 875 of file SystemBase.h.
|
virtualinherited |
Query a system for a variable.
var_name | name of the variable |
Definition at line 800 of file SystemBase.C.
Referenced by ADDGKernel::ADDGKernel(), ArrayDGKernel::ArrayDGKernel(), SystemBase::copyVars(), DGKernel::DGKernel(), DMMooseSetVariables(), FEProblemBase::duplicateVariableCheck(), SubProblem::getVariableHelper(), InterfaceKernelTempl< T >::InterfaceKernelTempl(), PNGOutput::makeMeshFunc(), MultiAppVariableValueSamplePostprocessorTransfer::MultiAppVariableValueSamplePostprocessorTransfer(), NonlinearSystemBase::setupScalingData(), and Coupleable::writableCoupledValue().
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inherited |
Check if the named vector exists in the system.
Definition at line 873 of file SystemBase.C.
Referenced by FEProblemBase::addCachedResidualDirectly(), Assembly::addCachedResiduals(), Assembly::addResidual(), Assembly::addResidualLower(), Assembly::addResidualNeighbor(), Assembly::addResidualScalar(), SystemBase::addVector(), NonlinearSystemBase::assembleScalingVector(), Assembly::cacheResidual(), Assembly::cacheResidualLower(), Assembly::cacheResidualNeighbor(), SystemBase::closeTaggedVector(), FEProblemBase::computeBounds(), NonlinearSystemBase::computeResidualTags(), CentralDifference::computeTimeDerivatives(), SystemBase::disassociateVectorFromTag(), SystemBase::getVector(), DisplacedSystem::hasVector(), MooseVariableScalar::reinit(), SystemBase::removeVector(), SubProblem::selectVectorTagsFromSystem(), NonlinearSystemBase::setPreviousNewtonSolution(), TaggingInterface::setResidual(), SystemBase::solutionPreviousNewton(), and SystemBase::zeroTaggedVector().
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inlinevirtualinherited |
Check if the tagged vector exists in the system.
Reimplemented in DisplacedSystem.
Definition at line 249 of file SystemBase.h.
|
inlineinherited |
Definition at line 114 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::setupDM().
|
inlineinherited |
Definition at line 110 of file NonlinearSystemBase.h.
|
inlineinherited |
Definition at line 674 of file NonlinearSystemBase.h.
Referenced by FEProblemSolve::FEProblemSolve().
|
overridevirtualinherited |
Initialize the system.
Reimplemented from SystemBase.
Reimplemented in NonlinearSystem.
Definition at line 186 of file NonlinearSystemBase.C.
Referenced by NonlinearSystem::init().
|
inlinevirtualinherited |
Called only once, just before the solve begins so objects can do some precalculations.
Definition at line 155 of file SystemBase.h.
|
overridevirtualinherited |
Setup Functions.
Reimplemented from SystemBase.
Definition at line 232 of file NonlinearSystemBase.C.
|
virtualinherited |
Initializes the solution state.
Reimplemented in DisplacedSystem.
Definition at line 1321 of file SystemBase.C.
Referenced by DisplacedSystem::initSolutionState().
|
virtualinherited |
If a variable is an array variable.
Definition at line 813 of file SystemBase.C.
|
virtualinherited |
Definition at line 834 of file SystemBase.C.
Referenced by Assembly::init(), ReferenceResidualProblem::initialSetup(), and Assembly::initNonlocalCoupling().
|
overridevirtualinherited |
Reimplemented from SystemBase.
Definition at line 2688 of file NonlinearSystemBase.C.
Referenced by NonlinearSystemBase::computeJacobianInternal().
|
virtualinherited |
If or not a matrix tag is active.
Definition at line 1117 of file SystemBase.C.
|
inlinevirtualinherited |
Definition at line 96 of file SystemBase.h.
Referenced by CreateDisplacedProblemAction::addProxyRelationshipManagers(), NonlinearSystemBase::computeScaling(), DMMooseGetEmbedding_Private(), DMSetUp_Moose_Pre(), SolutionIC::initialSetup(), MooseVariableData< OutputType >::MooseVariableData(), ComputeNodalUserObjectsThread::onNode(), ComputeNodalKernelsThread::onNode(), and ComputeNodalKernelJacobiansThread::onNode().
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inlinevirtualinherited |
Definition at line 97 of file SystemBase.h.
|
protectedinherited |
Do mortar constraint residual/jacobian computations.
Definition at line 3752 of file NonlinearSystemBase.C.
Referenced by NonlinearSystemBase::computeJacobianInternal(), NonlinearSystemBase::computeResidualAndJacobianInternal(), and NonlinearSystemBase::computeResidualInternal().
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virtualinherited |
Definition at line 1297 of file SystemBase.C.
Referenced by NonlinearSystemBase::addBoundaryCondition(), NonlinearSystemBase::addConstraint(), NonlinearSystemBase::addDamper(), NonlinearSystemBase::addDGKernel(), NonlinearSystemBase::addDiracKernel(), NonlinearSystemBase::addInterfaceKernel(), MooseEigenSystem::addKernel(), AuxiliarySystem::addKernel(), NonlinearSystemBase::addKernel(), SystemBase::addMatrix(), NonlinearSystemBase::addNodalKernel(), AuxiliarySystem::addScalarKernel(), NonlinearSystemBase::addScalarKernel(), NonlinearSystemBase::addSplit(), AuxiliarySystem::addTimeIntegrator(), NonlinearSystemBase::addTimeIntegrator(), AuxiliarySystem::addVariable(), SystemBase::addVariable(), SystemBase::addVector(), SystemBase::closeTaggedVector(), DisplacedProblem::DisplacedProblem(), SystemBase::getMatrix(), NonlinearSystemBase::getSplit(), DisplacedSystem::getVector(), SystemBase::getVector(), SystemBase::hasVector(), NonlinearEigenSystem::postAddResidualObject(), SystemBase::removeMatrix(), SystemBase::removeVector(), SystemBase::solutionState(), and SystemBase::zeroTaggedVector().
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inherited |
Indicated whether this system needs material properties on boundaries.
Definition at line 3720 of file NonlinearSystemBase.C.
|
inherited |
Indicated whether this system needs material properties on interfaces.
Definition at line 3726 of file NonlinearSystemBase.C.
|
virtualinherited |
Registers that the solution state state
is needed.
Reimplemented in DisplacedSystem.
Definition at line 1393 of file SystemBase.C.
Referenced by EigenExecutionerBase::EigenExecutionerBase(), SystemBase::initSolutionState(), DisplacedSystem::needSolutionState(), and SystemBase::solutionState().
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inherited |
Indicates whether this system needs material properties on internal sides.
Definition at line 3732 of file NonlinearSystemBase.C.
|
inherited |
Get the number of field variables in this system.
Definition at line 849 of file SystemBase.C.
Referenced by SystemBase::nVariables().
|
inherited |
Get the number of finite volume variables in this system.
Definition at line 859 of file SystemBase.C.
Referenced by MooseMesh::cacheFVElementalDoFs().
|
inlineinherited |
Return the number of linear iterations.
Definition at line 524 of file NonlinearSystemBase.h.
Referenced by IterationAdaptiveDT::acceptStep().
|
inlineinherited |
Return the number of non-linear iterations.
Definition at line 519 of file NonlinearSystemBase.h.
Referenced by IterationAdaptiveDT::acceptStep().
|
inlineinherited |
Return the last nonlinear norm.
Definition at line 540 of file NonlinearSystemBase.h.
Referenced by Console::writeVariableNorms().
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inlineoverridevirtual |
Implements NonlinearSystemBase.
Definition at line 29 of file DumpObjectsNonlinearSystem.h.
|
inlineoverridevirtualinherited |
Reimplemented from SystemBase.
Definition at line 643 of file NonlinearSystemBase.h.
Referenced by FEProblemBase::addCachedResidualDirectly(), and CrankNicolson::init().
|
inlineinherited |
Return the total number of residual evaluations done so far in this calculation.
Definition at line 529 of file NonlinearSystemBase.h.
|
inherited |
Gets the number of this system.
Definition at line 1125 of file SystemBase.C.
Referenced by FEProblemBase::addCachedResidualDirectly(), FEProblemBase::addJacobian(), FEProblemBase::addJacobianBlockTags(), FEProblemBase::addJacobianLowerD(), FEProblemBase::addJacobianNeighbor(), FEProblemBase::addJacobianNeighborLowerD(), FEProblemBase::addJacobianOffDiagScalar(), FEProblemBase::addJacobianScalar(), FEProblemBase::addResidual(), FEProblemBase::addResidualLower(), FEProblemBase::addResidualNeighbor(), FEProblemBase::addResidualScalar(), SystemBase::addScalingVector(), ADKernelTempl< T >::ADKernelTempl(), ArrayKernel::ArrayKernel(), NonlinearSystemBase::assembleScalingVector(), MooseMesh::cacheFaceInfoVariableOwnership(), MooseVariableScalar::computeAD(), FEProblemBase::computeBounds(), Assembly::computeFaceMap(), VectorNodalBC::computeJacobian(), ArrayNodalBC::computeJacobian(), NodalBC::computeJacobian(), FVBoundaryScalarLagrangeMultiplierConstraint::computeJacobian(), FVFluxBC::computeJacobian(), FVFluxKernel::computeJacobian(), FVInterfaceKernel::computeJacobian(), FEProblemBase::computeJacobianBlock(), NonlinearSystemBase::computeJacobianInternal(), FEProblemBase::computeNearNullSpace(), NonlinearSystemBase::computeNodalBCsResidualAndJacobian(), FEProblemBase::computeNullSpace(), VectorNodalBC::computeOffDiagJacobian(), ArrayNodalBC::computeOffDiagJacobian(), NodalBC::computeOffDiagJacobian(), NodalKernel::computeOffDiagJacobian(), ComputeFullJacobianThread::computeOnBoundary(), ComputeFullJacobianThread::computeOnElement(), ComputeFullJacobianThread::computeOnInterface(), ComputeFullJacobianThread::computeOnInternalFace(), FEProblemBase::computePostCheck(), EqualValueEmbeddedConstraint::computeQpJacobian(), EqualValueEmbeddedConstraint::computeQpOffDiagJacobian(), FVOrthogonalBoundaryDiffusion::computeQpResidual(), FVBoundaryScalarLagrangeMultiplierConstraint::computeResidual(), FVFluxBC::computeResidual(), FVFluxKernel::computeResidual(), FVInterfaceKernel::computeResidual(), Kernel::computeResidualAndJacobian(), NodalBC::computeResidualAndJacobian(), IntegratedBC::computeResidualAndJacobian(), NonlinearSystemBase::computeResidualAndJacobianInternal(), NonlinearSystemBase::computeResidualInternal(), NonlinearSystemBase::computeResidualTags(), NonlinearSystemBase::computeScaling(), Assembly::computeSinglePointMapAD(), FEProblemBase::computeTransposeNullSpace(), DebugResidualAux::computeValue(), NearestNodeValueAux::computeValue(), NonlinearSystemBase::constraintJacobians(), Coupleable::coupled(), FEProblemBase::currentNlSysNum(), PseudoTimestep::currentResidualNorm(), Moose::FV::determineElemOneAndTwo(), ComputeResidualThread::determineObjectWarehouses(), ComputeResidualAndJacobianThread::determineObjectWarehouses(), Moose::doDerivatives(), VariableResidual::execute(), GreaterThanLessThanPostprocessor::execute(), NodalNormalsCorner::execute(), NodalNormalsEvaluator::execute(), NodalNormalsPreprocessor::execute(), ElementSubdomainModifier::finalize(), NumNonlinearIterations::finalize(), BoundsBase::getDoFIndex(), NonlinearSystemBase::getNodeDofs(), SystemBase::getSubdomainsForVar(), NumLinearIterations::getValue(), NumResidualEvaluations::getValue(), Residual::getValue(), Moose::globalDofIndexToDerivative(), FVBoundaryCondition::hasFaceSide(), NonlinearSystemBase::initialSetup(), ActivateElementsUserObjectBase::initSolutions(), EigenExecutionerBase::inversePowerIteration(), Kernel::Kernel(), MooseVariableInterface< Real >::MooseVariableInterface(), EigenExecutionerBase::nonlinearSolve(), ComputeDiracThread::onElement(), ComputeNodalKernelBCJacobiansThread::onNode(), ComputeNodalKernelJacobiansThread::onNode(), PointwiseRenormalizeVector::PointwiseRenormalizeVector(), FEProblemBase::prepare(), FEProblemBase::prepareAssembly(), SystemBase::prepareFace(), FEProblemBase::prepareFaceShapes(), FEProblemBase::prepareNeighborShapes(), FEProblemBase::prepareShapes(), EqualValueEmbeddedConstraint::reinitConstraint(), FEProblemBase::reinitDirac(), FEProblemBase::reinitNeighborPhys(), FEProblemBase::reinitOffDiagScalars(), FEProblemBase::setResidual(), FEProblemBase::setResidualNeighbor(), PhysicsBasedPreconditioner::setup(), FVInterfaceKernel::setupData(), FEProblemSolve::solve(), ActuallyExplicitEuler::solve(), LStableDirk2::solve(), LStableDirk3::solve(), ImplicitMidpoint::solve(), ExplicitTVDRK2::solve(), LStableDirk4::solve(), AStableDirk4::solve(), ExplicitRK2::solve(), ExplicitSSPRungeKutta::solveStage(), NonlinearThread::subdomainChanged(), UserObject::systemNumber(), MultiAppDofCopyTransfer::transferDofObject(), FVFluxBC::uOnGhost(), FVFluxBC::uOnUSub(), and MortarConstraintBase::zeroInactiveLMDofs().
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virtualinherited |
Get the number of variables in this system.
Definition at line 840 of file SystemBase.C.
Referenced by AdaptivityAction::act(), FieldSplitPreconditioner::FieldSplitPreconditioner(), FiniteDifferencePreconditioner::FiniteDifferencePreconditioner(), NonlinearSystemBase::getNodeDofs(), Assembly::init(), MaxVarNDofsPerElem::onElement(), MaxVarNDofsPerNode::onNode(), PhysicsBasedPreconditioner::PhysicsBasedPreconditioner(), and SingleMatrixPreconditioner::SingleMatrixPreconditioner().
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inlineinherited |
Definition at line 679 of file NonlinearSystemBase.h.
Referenced by ComputeJacobianForScalingThread::computeOnElement(), and FEProblemSolve::FEProblemSolve().
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inlineinherited |
Definition at line 680 of file NonlinearSystemBase.h.
|
inherited |
Called at the beginning of the time step.
Definition at line 875 of file NonlinearSystemBase.C.
Called from explicit time stepping to overwrite boundary positions (explicit dynamics).
This will close/assemble the passed-in soln
after overwrite
Definition at line 1584 of file NonlinearSystemBase.C.
Referenced by ActuallyExplicitEuler::solve().
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inherited |
Get the PerfGraph.
Definition at line 78 of file PerfGraphInterface.C.
Referenced by CommonOutputAction::act(), PerfGraphData::finalize(), and PerfGraphOutput::output().
|
inlineprotectedvirtualinherited |
Called after any ResidualObject-derived objects are added to the system.
Reimplemented in NonlinearEigenSystem.
Definition at line 772 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::addBoundaryCondition(), NonlinearSystemBase::addConstraint(), NonlinearSystemBase::addDGKernel(), NonlinearSystemBase::addDiracKernel(), NonlinearSystemBase::addInterfaceKernel(), NonlinearSystemBase::addKernel(), NonlinearSystemBase::addNodalKernel(), and NonlinearSystemBase::addScalarKernel().
Prepare the system for use.
tid | ID of the thread |
Definition at line 245 of file SystemBase.C.
Referenced by SubProblem::reinitElemFaceRef().
Prepare the system for use on sides.
This will try to reuse the preparation done on the element.
tid | ID of the thread |
resize_data | Pass True if this system needs to resize residual and jacobian datastructures based on preparing this face |
Definition at line 268 of file SystemBase.C.
Prepare the system for use for lower dimensional elements.
tid | ID of the thread |
Definition at line 321 of file SystemBase.C.
Referenced by SubProblem::reinitLowerDElem().
Prepare the system for use.
tid | ID of the thread |
Definition at line 313 of file SystemBase.C.
Referenced by SubProblem::reinitNeighborFaceRef().
|
protectedinherited |
Perform some steps to get ready for the solver.
These include
Definition at line 4055 of file NonlinearSystemBase.C.
Referenced by NonlinearSystem::solve(), and NonlinearEigenSystem::solve().
|
inlineinherited |
Force the printing of all variable norms after each solve.
Definition at line 546 of file NonlinearSystemBase.h.
|
protectedinherited |
Call to register a named section for timing.
section_name | The name of the code section to be timed |
level | The importance of the timer - lower is more important (0 will always come out) |
Definition at line 53 of file PerfGraphInterface.C.
|
protectedinherited |
Call to register a named section for timing.
section_name | The name of the code section to be timed |
level | The importance of the timer - lower is more important (0 will always come out) |
live_message | The message to be printed to the screen during execution |
print_dots | Whether or not progress dots should be printed for this section |
Definition at line 64 of file PerfGraphInterface.C.
Reinit an element assembly info.
elem | Which element we are reinitializing for |
tid | ID of the thread |
Reimplemented in AuxiliarySystem.
Definition at line 329 of file SystemBase.C.
|
virtualinherited |
Reinit assembly info for a side of an element.
elem | The element |
side | Side of of the element |
bnd_id | Boundary id on that side |
tid | Thread ID |
Reimplemented in AuxiliarySystem.
Definition at line 349 of file SystemBase.C.
Referenced by SubProblem::reinitElemFaceRef().
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inherited |
Compute the incremental change in variables at nodes for dampers.
Called before we use damping
tid | Thread ID |
damped_vars | Set of variables for which increment is to be computed |
Definition at line 3526 of file NonlinearSystemBase.C.
Referenced by ComputeNodalDampingThread::onNode().
|
inherited |
Compute the incremental change in variables at QPs for dampers.
Called before we use damping
tid | Thread ID |
damped_vars | Set of variables for which increment is to be computed |
Definition at line 3518 of file NonlinearSystemBase.C.
Referenced by ComputeElemDampingThread::onElement().
Compute the values of the variables on the lower dimensional element.
Definition at line 379 of file SystemBase.C.
Referenced by SubProblem::reinitLowerDElem().
Compute the values of the variables at all the current points.
Definition at line 371 of file SystemBase.C.
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virtualinherited |
Compute the values of the variables at all the current points.
Definition at line 360 of file SystemBase.C.
Referenced by SubProblem::reinitNeighborFaceRef().
Reinit nodal assembly info.
node | Node to reinit for |
tid | Thread ID |
Definition at line 387 of file SystemBase.C.
|
virtualinherited |
Reinit nodal assembly info on a face.
node | Node to reinit |
bnd_id | Boundary ID |
tid | Thread ID |
Definition at line 399 of file SystemBase.C.
|
inherited |
Reinit nodal assembly info on a face.
node | Node to reinit |
bnd_id | Boundary ID |
tid | Thread ID |
Definition at line 399 of file SystemBase.C.
|
protectedinherited |
Reinitialize quantities such as variables, residuals, Jacobians, materials for node-face constraints.
Definition at line 1089 of file NonlinearSystemBase.C.
Referenced by NonlinearSystemBase::constraintJacobians(), NonlinearSystemBase::constraintResiduals(), and NonlinearSystemBase::setConstraintSecondaryValues().
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virtualinherited |
Reinit variables at a set of nodes.
nodes | List of node ids to reinit |
tid | Thread ID |
Definition at line 411 of file SystemBase.C.
|
virtualinherited |
Reinit variables at a set of neighbor nodes.
nodes | List of node ids to reinit |
tid | Thread ID |
Definition at line 422 of file SystemBase.C.
|
virtualinherited |
Reinit scalar varaibles.
tid | Thread ID |
reinit_for_derivative_reordering | A flag indicating whether we are reinitializing for the purpose of re-ordering derivative information for ADNodalBCs |
Definition at line 433 of file SystemBase.C.
Removes a matrix with a given tag.
tag_name | The name of the tag |
Definition at line 579 of file SystemBase.C.
|
inherited |
Remove a vector from the system with the given name.
Definition at line 1291 of file SystemBase.C.
Referenced by SystemBase::restoreOldSolutions().
Remove a solution length vector from the system with the specified TagID.
tag_id | Tag ID |
Definition at line 690 of file SystemBase.C.
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inlineoverridevirtual |
Call this method if you want the residual and Jacobian to be computed simultaneously.
Implements NonlinearSystemBase.
Definition at line 39 of file DumpObjectsNonlinearSystem.h.
|
overridevirtualinherited |
Reimplemented from SystemBase.
Definition at line 3334 of file NonlinearSystemBase.C.
|
overridevirtualinherited |
Reimplemented from SystemBase.
Definition at line 3343 of file NonlinearSystemBase.C.
|
overridevirtualinherited |
Reimplemented from SystemBase.
Definition at line 1633 of file NonlinearSystemBase.C.
Referenced by NonlinearSystemBase::computeResidualAndJacobianInternal(), and NonlinearSystemBase::computeResidualInternal().
Return a residual vector that is associated with the residual tag.
Definition at line 1002 of file NonlinearSystemBase.C.
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inlineoverridevirtualinherited |
Reimplemented from SystemBase.
Definition at line 644 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::computeNodalBCs(), FEProblemBase::computeResidual(), FEProblemBase::computeResidualAndJacobian(), NonlinearSystemBase::computeResidualAndJacobianTags(), FEProblemBase::computeResidualInternal(), NonlinearSystemBase::computeResidualTag(), NonlinearSystemBase::computeResidualTags(), FEProblemBase::computeResidualType(), and FEProblemBase::setResidualNeighbor().
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virtualinherited |
Restore the old and older solutions when the saved solutions present.
Definition at line 531 of file SystemBase.C.
|
overridevirtualinherited |
Restore current solutions (call after your solve failed)
Reimplemented from SystemBase.
Definition at line 223 of file NonlinearSystemBase.C.
|
inlineoverridevirtual |
Implements NonlinearSystemBase.
Definition at line 33 of file DumpObjectsNonlinearSystem.h.
|
virtualinherited |
Save the old and older solutions.
Definition at line 499 of file SystemBase.C.
|
inlineinherited |
Definition at line 668 of file NonlinearSystemBase.h.
Referenced by FEProblemSolve::FEProblemSolve().
|
overridevirtualinherited |
Returns a reference to a serialized version of the solution vector for this subproblem.
Implements SystemBase.
Definition at line 3485 of file NonlinearSystemBase.C.
Referenced by PNGOutput::calculateRescalingValues(), and PNGOutput::makeMeshFunc().
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virtualinherited |
Definition at line 3434 of file NonlinearSystemBase.C.
Referenced by NonlinearSystemBase::setSolution().
|
inherited |
Set the active vector tags for the scalar variables.
Definition at line 1542 of file SystemBase.C.
Referenced by SubProblem::setActiveScalarVariableCoupleableVectorTags().
|
inherited |
Set the active vector tags for the variables.
Definition at line 1536 of file SystemBase.C.
Referenced by SubProblem::setActiveFEVariableCoupleableVectorTags().
|
inherited |
Sets the value of constrained variables in the solution vector.
Definition at line 1148 of file NonlinearSystemBase.C.
Referenced by NonlinearSystemBase::setInitialSolution().
|
inherited |
If called with a single string, it is used as the name of a the top-level decomposition split.
If the array is empty, no decomposition is used. In all other cases an error occurs.
Although a single top-level split is allowed in Problem, treat it as a list of splits for conformity with the Split input syntax.
Definition at line 448 of file NonlinearSystemBase.C.
Referenced by FEProblemSolve::FEProblemSolve(), and FieldSplitPreconditioner::FieldSplitPreconditioner().
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inherited |
Definition at line 884 of file NonlinearSystemBase.C.
Referenced by NonlinearSystemBase::preSolve().
Definition at line 3703 of file NonlinearSystemBase.C.
Referenced by MoosePreconditioner::MoosePreconditioner().
Definition at line 3688 of file NonlinearSystemBase.C.
Referenced by MoosePreconditioner::MoosePreconditioner().
|
inherited |
Sets a preconditioner.
pc | The preconditioner to be set |
Definition at line 3497 of file NonlinearSystemBase.C.
Referenced by SetupPreconditionerAction::act().
Definition at line 939 of file NonlinearSystemBase.C.
Referenced by SetupPredictorAction::act().
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virtualinherited |
Definition at line 3745 of file NonlinearSystemBase.C.
Referenced by FEProblemBase::computePostCheck().
Definition at line 3449 of file NonlinearSystemBase.C.
Referenced by FEProblemBase::computeDamping(), FEProblemBase::computeJacobianInternal(), FEProblemBase::computeJacobianTag(), FEProblemBase::computeResidualAndJacobian(), FEProblemBase::computeResidualInternal(), FEProblemBase::computeResidualTag(), FEProblemBase::computeResidualType(), ActuallyExplicitEuler::solve(), and ExplicitSSPRungeKutta::solveStage().
Set transient term used by residual and Jacobian evaluation.
udot | transient term |
Definition at line 3461 of file NonlinearSystemBase.C.
|
virtualinherited |
Set transient term used by residual and Jacobian evaluation.
udotdot | transient term |
Definition at line 3467 of file NonlinearSystemBase.C.
|
virtualinherited |
Definition at line 3479 of file NonlinearSystemBase.C.
|
virtualinherited |
Definition at line 3473 of file NonlinearSystemBase.C.
|
inherited |
Setup damping stuff (called before we actually start)
Definition at line 3512 of file NonlinearSystemBase.C.
Referenced by NonlinearSystemBase::init().
|
inherited |
Setup the PETSc DM object (when appropriate)
Definition at line 441 of file NonlinearSystemBase.C.
Referenced by FEProblemBase::solve().
|
inherited |
Definition at line 464 of file NonlinearSystemBase.C.
Referenced by FieldSplitPreconditioner::FieldSplitPreconditioner().
|
inlineoverridevirtual |
|
inherited |
set all the global dof indices for a variable
var_name | The name of the variable |
Definition at line 175 of file SystemBase.C.
|
inlineinherited |
Sets the verbose flag.
[in] | verbose | Verbose flag |
Definition at line 129 of file SystemBase.h.
Referenced by Executioner::Executioner().
|
inlineinherited |
Definition at line 176 of file SystemBase.h.
Referenced by Adaptivity::adaptMesh(), TransientMultiApp::appTransferVector(), MooseEigenSystem::combineSystemSolution(), NonlinearSystemBase::computeDamping(), AuxiliarySystem::computeElementalVarsHelper(), NonlinearSystemBase::computeJacobianInternal(), AuxiliarySystem::computeMortarNodalVars(), NonlinearSystemBase::computeNodalBCs(), AuxiliarySystem::computeNodalVarsHelper(), NonlinearSystemBase::computeResidualTags(), AuxiliarySystem::computeScalarVars(), NonlinearSystemBase::constraintResiduals(), SystemBase::copyVars(), MultiAppPostprocessorToAuxScalarTransfer::execute(), MultiAppScalarToAuxScalarTransfer::execute(), NodalNormalsCorner::execute(), NodalNormalsEvaluator::execute(), MultiAppVariableValueSamplePostprocessorTransfer::execute(), NodalNormalsPreprocessor::execute(), NodalNormalsCorner::finalize(), NodalNormalsEvaluator::finalize(), NodalNormalsPreprocessor::finalize(), NodalNormalsCorner::initialize(), NodalNormalsEvaluator::initialize(), NodalNormalsPreprocessor::initialize(), MooseEigenSystem::initSystemSolution(), ComputeMarkerThread::onElement(), ComputeIndicatorThread::onElement(), ComputeUserObjectsThread::onElement(), ComputeNodalUserObjectsThread::onNode(), FEProblemBase::projectInitialConditionOnCustomRange(), FEProblemBase::projectSolution(), Transient::relativeSolutionDifferenceNorm(), SystemBase::restoreSolutions(), SecantSolve::saveVariableValues(), SteffensenSolve::saveVariableValues(), PicardSolve::saveVariableValues(), MooseEigenSystem::scaleSystemSolution(), AuxiliarySystem::serializeSolution(), NonlinearSystemBase::setConstraintSecondaryValues(), NonlinearSystemBase::setInitialSolution(), DisplacedSystem::solutionInternal(), NonlinearEigenSystem::solve(), MultiAppDofCopyTransfer::transfer(), SteffensenSolve::transformVariables(), SecantSolve::transformVariables(), PicardSolve::transformVariables(), and SystemBase::zeroVariables().
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inlineinherited |
Definition at line 179 of file SystemBase.h.
|
inlineoverrideprotectedvirtualinherited |
Internal getter for solution owned by libMesh.
Implements SystemBase.
Definition at line 774 of file NonlinearSystemBase.h.
|
inlineinherited |
Definition at line 177 of file SystemBase.h.
Referenced by MooseEigenSystem::combineSystemSolution(), CentralDifference::computeTimeDerivatives(), NonlinearSystemBase::constraintResiduals(), ActivateElementsUserObjectBase::initSolutions(), MooseEigenSystem::initSystemSolutionOld(), MooseVariableScalar::reinit(), Transient::relativeSolutionDifferenceNorm(), SystemBase::restoreSolutions(), ElementSubdomainModifier::setOldAndOlderSolutionsForMovedNodes(), ActuallyExplicitEuler::solve(), and AdamsPredictor::timestepSetup().
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inlineinherited |
Definition at line 180 of file SystemBase.h.
|
inlineinherited |
Definition at line 178 of file SystemBase.h.
Referenced by MooseEigenSystem::combineSystemSolution(), CentralDifference::computeTimeDerivatives(), ActivateElementsUserObjectBase::initSolutions(), MooseVariableScalar::reinit(), and ElementSubdomainModifier::setOldAndOlderSolutionsForMovedNodes().
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inlineinherited |
Definition at line 181 of file SystemBase.h.
|
virtualinherited |
Reimplemented in DisplacedSystem.
Definition at line 1312 of file SystemBase.C.
Referenced by SystemBase::copyOldSolutions(), SystemBase::copySolutionsBackwards(), and SystemBase::restoreSolutions().
|
virtualinherited |
Reimplemented in DisplacedSystem.
Definition at line 1303 of file SystemBase.C.
|
virtualinherited |
Get a state of the solution (0 = current, 1 = old, 2 = older, etc).
If the state does not exist, it will be initialized in addition to any newer states before it that have not been initialized.
Reimplemented in DisplacedSystem.
Definition at line 1384 of file SystemBase.C.
Referenced by SystemBase::copyOldSolutions(), SystemBase::copySolutionsBackwards(), PointwiseRenormalizeVector::execute(), PointwiseRenormalizeVector::finalize(), SystemBase::restoreOldSolutions(), SystemBase::saveOldSolutions(), SystemBase::solution(), SystemBase::solutionOld(), SystemBase::solutionOlder(), and DisplacedSystem::solutionState().
|
virtualinherited |
Get a state of the solution (0 = current, 1 = old, 2 = older, etc).
Reimplemented in DisplacedSystem.
Definition at line 1357 of file SystemBase.C.
|
inlineinherited |
Whether or not the solution states have been initialized via initSolutionState()
After the solution states have been initialized, additional solution states cannot be added.
Definition at line 888 of file SystemBase.h.
Referenced by ScalarKernelBase::uOld(), and AuxScalarKernel::uOld().
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inlineoverridevirtualinherited |
Implements SystemBase.
Definition at line 393 of file NonlinearSystemBase.h.
Referenced by CentralDifference::initialSetup().
|
inlineoverridevirtualinherited |
Implements SystemBase.
Definition at line 397 of file NonlinearSystemBase.h.
|
inlineoverridevirtualinherited |
Implements SystemBase.
Definition at line 394 of file NonlinearSystemBase.h.
Referenced by CentralDifference::initialSetup().
|
inlineoverridevirtualinherited |
Implements SystemBase.
Definition at line 398 of file NonlinearSystemBase.h.
|
inlineoverridevirtualinherited |
Implements SystemBase.
Definition at line 396 of file NonlinearSystemBase.h.
|
inlineoverridevirtualinherited |
Implements SystemBase.
Definition at line 400 of file NonlinearSystemBase.h.
|
inlineoverridevirtualinherited |
Implements SystemBase.
Definition at line 395 of file NonlinearSystemBase.h.
|
inlineoverridevirtualinherited |
Implements SystemBase.
Definition at line 399 of file NonlinearSystemBase.h.
|
inlineoverridevirtual |
Solve the system (using libMesh magic)
Implements NonlinearSystemBase.
Definition at line 30 of file DumpObjectsNonlinearSystem.h.
|
inlineoverridevirtual |
Quit the current solve as soon as possible.
Implements NonlinearSystemBase.
Definition at line 31 of file DumpObjectsNonlinearSystem.h.
|
inherited |
Definition at line 1508 of file SystemBase.C.
|
virtualinherited |
Called from assembling when we hit a new subdomain.
subdomain | ID of the new subdomain |
tid | Thread ID |
Definition at line 945 of file NonlinearSystemBase.C.
|
virtualinherited |
Reimplemented in AuxiliarySystem.
Definition at line 1508 of file SystemBase.C.
Referenced by AuxiliarySystem::subdomainSetup(), and NonlinearSystemBase::subdomainSetup().
|
inlinevirtualinherited |
Definition at line 98 of file SystemBase.h.
Referenced by CreateDisplacedProblemAction::addProxyRelationshipManagers(), MooseVariableBase::allDofIndices(), NonlinearSystemBase::constraintJacobians(), NonlinearSystemBase::constraintResiduals(), Moose::globalDofIndexToDerivative(), NonlinearSystemBase::initialSetup(), MooseVariableScalar::MooseVariableScalar(), NonlinearSystemBase::overwriteNodeFace(), MooseVariableScalar::reinit(), NonlinearSystemBase::reinitNodeFace(), and NonlinearSystemBase::setConstraintSecondaryValues().
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inlinevirtualinherited |
Definition at line 99 of file SystemBase.h.
|
inlineoverridevirtualinherited |
Get the reference to the libMesh system.
Implements SystemBase.
Definition at line 633 of file NonlinearSystemBase.h.
Referenced by Adaptivity::adaptMesh(), PhysicsBasedPreconditioner::addSystem(), PhysicsBasedPreconditioner::apply(), NonlinearSystemBase::computeScaling(), PseudoTimestep::currentResidualNorm(), DMCreateGlobalVector_Moose(), DMCreateMatrix_Moose(), DMMooseFunction(), DMMooseGetEmbedding_Private(), DMMooseGetMeshBlocks_Private(), DMMooseJacobian(), DMSetFromOptions_Moose(), DMSetUp_Moose_Pre(), VariableResidual::execute(), NonlinearSystemBase::getResidualNonTimeVector(), NonlinearSystemBase::getResidualTimeVector(), ReferenceResidualProblem::initialSetup(), Moose::SlepcSupport::mooseMatMult(), Moose::SlepcSupport::moosePetscSNESFormFunction(), Moose::SlepcSupport::moosePetscSNESFormMatricesTags(), Moose::SlepcSupport::moosePetscSNESFormMatrixTag(), Moose::SlepcSupport::mooseSlepcEigenFormFunctionAB(), ConsoleUtils::outputNonlinearSystemInformation(), PhysicsBasedPreconditioner::PhysicsBasedPreconditioner(), NonlinearSystemBase::residualGhosted(), PhysicsBasedPreconditioner::setup(), NonlinearSystemBase::setupScalingData(), SingleMatrixPreconditioner::SingleMatrixPreconditioner(), NonlinearSystem::solve(), NonlinearEigenSystem::solve(), LStableDirk2::solve(), LStableDirk3::solve(), ImplicitMidpoint::solve(), ExplicitTVDRK2::solve(), AStableDirk4::solve(), LStableDirk4::solve(), ExplicitRK2::solve(), TimeIntegrator::solve(), Moose::PetscSupport::storePetscOptions(), NonlinearSystemBase::turnOffJacobian(), ReferenceResidualProblem::updateReferenceResidual(), VariableCondensationPreconditioner::VariableCondensationPreconditioner(), and Console::writeVariableNorms().
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Return the Matrix Tag ID for System.
Reimplemented from SystemBase.
Definition at line 645 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::addImplicitGeometricCouplingEntries(), NonlinearSystemBase::computeJacobian(), NonlinearSystemBase::computeJacobianInternal(), FEProblemBase::computeJacobianInternal(), FEProblemBase::computeResidualAndJacobian(), NonlinearSystemBase::constraintJacobians(), and NonlinearSystemBase::enforceNodalConstraintsJacobian().
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section_name
.Optionally adds a prefix if one is defined.
Definition at line 47 of file PerfGraphInterface.C.
Referenced by PerfGraphInterface::registerTimedSection().
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Reimplemented from SystemBase.
Definition at line 333 of file NonlinearSystemBase.C.
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Ideally, we should not need this API.
There exists a really bad API "addCachedResidualDirectly " in FEProblem and DisplacedProblem This API should go away once addCachedResidualDirectly is removed in the future Return Tag ID for Time
Reimplemented from SystemBase.
Definition at line 642 of file NonlinearSystemBase.h.
Referenced by FEProblemBase::addCachedResidualDirectly(), and NonlinearSystemBase::containsTimeKernel().
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Turn off the Jacobian (must be called before equation system initialization)
Reimplemented in NonlinearEigenSystem.
Definition at line 216 of file NonlinearSystemBase.C.
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Update the system (doing libMesh magic)
Definition at line 1211 of file SystemBase.C.
Referenced by Adaptivity::adaptMesh(), MooseEigenSystem::combineSystemSolution(), NonlinearSystemBase::computeDamping(), NonlinearSystemBase::computeJacobianInternal(), NonlinearSystemBase::computeResidualTags(), EigenProblem::doFreeNonlinearPowerIterations(), PointwiseRenormalizeVector::finalize(), MooseEigenSystem::initSystemSolution(), MooseEigenSystem::initSystemSolutionOld(), MooseEigenSystem::scaleSystemSolution(), NonlinearSystemBase::setConstraintSecondaryValues(), NonlinearSystemBase::setInitialSolution(), EigenProblem::solve(), FEProblemBase::solve(), DisplacedProblem::syncSolutions(), MultiAppDofCopyTransfer::transfer(), SecantSolve::transformVariables(), SteffensenSolve::transformVariables(), and PicardSolve::transformVariables().
Update active objects of Warehouses owned by NonlinearSystemBase.
Definition at line 3199 of file NonlinearSystemBase.C.
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If called with true this system will use a field split preconditioner matrix.
Definition at line 460 of file NonlinearSystemBase.h.
Referenced by FieldSplitPreconditioner::FieldSplitPreconditioner().
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If called with true this system will use a finite differenced form of the Jacobian as the preconditioner.
Definition at line 445 of file NonlinearSystemBase.h.
Referenced by FiniteDifferencePreconditioner::FiniteDifferencePreconditioner().
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Definition at line 16 of file PerfGraphInterface.C.
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Definition at line 916 of file SystemBase.h.
Referenced by Coupleable::coupled(), and UserObject::UserObject().
Zero vector with the given tag.
Definition at line 664 of file SystemBase.C.
Referenced by SystemBase::zeroTaggedVectors().
Zero all vectors for given tags.
Definition at line 683 of file SystemBase.C.
Referenced by NonlinearSystemBase::computeResidualAndJacobianTags(), and NonlinearSystemBase::computeResidualTags().
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Zero out the solution for the list of variables passed in.
@ param vars_to_be_zeroed The variable names in this vector will have their solutions set to zero after this call
Reimplemented in DisplacedSystem.
Definition at line 189 of file SystemBase.C.
Referenced by DisplacedSystem::zeroVariables(), SystemBase::zeroVariablesForJacobian(), and SystemBase::zeroVariablesForResidual().
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Zero out the solution for the variables that were registered as needing to have their solutions zeroed on out on Jacobian evaluation by a call to addVariableToZeroOnResidual()
Definition at line 224 of file SystemBase.C.
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Zero out the solution for the variables that were registered as needing to have their solutions zeroed on out on residual evaluation by a call to addVariableToZeroOnResidual()
Definition at line 218 of file SystemBase.C.
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Definition at line 730 of file NonlinearSystemBase.C.
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Definition at line 863 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::addBoundaryCondition(), NonlinearSystemBase::setInitialSolution(), and NonlinearSystemBase::updateActive().
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Whether or not to add implicit geometric couplings to the Jacobian for FDP.
Definition at line 909 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::addImplicitGeometricCouplingEntriesToJacobian(), NonlinearSystemBase::augmentSparsity(), and NonlinearSystemBase::computeJacobianInternal().
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Definition at line 926 of file SystemBase.h.
Referenced by NonlinearSystemBase::computeJacobianBlocks(), NonlinearSystemBase::computeJacobianInternal(), NonlinearSystemBase::computeJacobianTags(), NonlinearSystemBase::computeResidualInternal(), NonlinearSystemBase::computeResidualTags(), NonlinearSystemBase::jacobianSetup(), NonlinearSystemBase::residualSetup(), and NonlinearSystem::solve().
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Whether or not to assemble the residual and Jacobian after the application of each constraint.
Definition at line 912 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::assembleConstraintsSeparately(), NonlinearSystemBase::constraintJacobians(), and NonlinearSystemBase::constraintResiduals().
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Whether to automatically scale the variables.
Definition at line 979 of file SystemBase.h.
Referenced by SystemBase::automaticScaling(), NonlinearSystem::init(), NonlinearSystemBase::initialSetup(), and NonlinearSystemBase::preSolve().
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Definition at line 693 of file NonlinearSystemBase.h.
Referenced by FEProblemBase::checkNonlinearConvergence(), FEProblemSolve::FEProblemSolve(), and NonlinearSystem::solve().
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Whether the scaling factors should only be computed once at the beginning of the simulation through an extra Jacobian evaluation.
If this is set to false, then the scaling factors will be computed during an extra Jacobian evaluation at the beginning of every time step.
Definition at line 960 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::computeScaling(), and NonlinearSystemBase::computeScalingOnce().
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Flag used to indicate whether we have already computed the scaling Jacobian.
Definition at line 955 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::computedScalingJacobian(), and NonlinearSystemBase::computeScaling().
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Definition at line 936 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::computingInitialResidual(), and NonlinearSystem::solve().
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An instance of helper class to write streams to the Console objects.
Definition at line 31 of file ConsoleStreamInterface.h.
Referenced by IterationAdaptiveDT::acceptStep(), MeshOnlyAction::act(), SetupDebugAction::act(), MaterialOutputAction::act(), Adaptivity::adaptMesh(), FEProblemBase::adaptMesh(), PerfGraph::addToExecutionList(), SimplePredictor::apply(), SystemBase::applyScalingFactors(), MultiApp::backup(), FEProblemBase::backupMultiApps(), CoarsenedPiecewiseLinear::buildCoarsenedGrid(), MeshDiagnosticsGenerator::checkElementOverlap(), MeshDiagnosticsGenerator::checkElementTypes(), MeshDiagnosticsGenerator::checkElementVolumes(), FEProblemBase::checkExceptionAndStopSolve(), MeshDiagnosticsGenerator::checkLocalJacobians(), MeshDiagnosticsGenerator::checkNonConformalMesh(), MeshDiagnosticsGenerator::checkNonConformalMeshFromAdaptivity(), MeshDiagnosticsGenerator::checkNonPlanarSides(), FEProblemBase::checkProblemIntegrity(), ReferenceResidualProblem::checkRelativeConvergence(), MeshDiagnosticsGenerator::checkSidesetsOrientation(), IterationAdaptiveDT::computeAdaptiveDT(), Transient::computeConstrainedDT(), FixedPointSolve::computeCustomConvergencePostprocessor(), NonlinearSystemBase::computeDamping(), IterationAdaptiveDT::computeDT(), IterationAdaptiveDT::computeFailedDT(), IterationAdaptiveDT::computeInitialDT(), IterationAdaptiveDT::computeInterpolationDT(), NonlinearSystemBase::computeScaling(), Problem::console(), IterationAdaptiveDT::constrainStep(), TimeStepper::constrainStep(), MultiApp::createApp(), FEProblemBase::execMultiApps(), FEProblemBase::execMultiAppTransfers(), MessageFromInput::execute(), Steady::execute(), Eigenvalue::execute(), ActionWarehouse::executeActionsWithAction(), ActionWarehouse::executeAllActions(), ElementQualityChecker::finalize(), FEProblemBase::finishMultiAppStep(), MeshRepairGenerator::fixOverlappingNodes(), CoarsenBlockGenerator::generate(), MeshGenerator::generateInternal(), VariableCondensationPreconditioner::getDofToCondense(), InversePowerMethod::init(), NonlinearEigen::init(), FEProblemBase::initialAdaptMesh(), EigenExecutionerBase::inversePowerIteration(), FEProblemBase::joinAndFinalize(), Transient::keepGoing(), IterationAdaptiveDT::limitDTByFunction(), IterationAdaptiveDT::limitDTToPostprocessorValue(), FEProblemBase::logAdd(), EigenExecutionerBase::makeBXConsistent(), Console::meshChanged(), MooseBaseErrorInterface::mooseDeprecated(), MooseBaseErrorInterface::mooseInfo(), MooseBaseErrorInterface::mooseWarning(), MooseBaseErrorInterface::mooseWarningNonPrefixed(), ReferenceResidualProblem::nonlinearConvergenceSetup(), ReporterDebugOutput::output(), PerfGraphOutput::output(), MaterialPropertyDebugOutput::output(), DOFMapOutput::output(), VariableResidualNormsDebugOutput::output(), Console::output(), ControlOutput::outputActiveObjects(), ControlOutput::outputChangedControls(), ControlOutput::outputControls(), Console::outputInput(), Console::outputPostprocessors(), PseudoTimestep::outputPseudoTimestep(), Console::outputReporters(), Console::outputScalarVariables(), Console::outputSystemInformation(), FEProblemBase::possiblyRebuildGeomSearchPatches(), EigenExecutionerBase::postExecute(), AB2PredictorCorrector::postSolve(), ActionWarehouse::printActionDependencySets(), SolutionInvalidity::printDebug(), EigenExecutionerBase::printEigenvalue(), SecantSolve::printFixedPointConvergenceHistory(), SteffensenSolve::printFixedPointConvergenceHistory(), PicardSolve::printFixedPointConvergenceHistory(), FixedPointSolve::printFixedPointConvergenceReason(), PerfGraphLivePrint::printLiveMessage(), MaterialPropertyDebugOutput::printMaterialMap(), PerfGraphLivePrint::printStats(), AutomaticMortarGeneration::projectPrimaryNodesSinglePair(), AutomaticMortarGeneration::projectSecondaryNodesSinglePair(), CoarsenBlockGenerator::recursiveCoarsen(), SolutionTimeAdaptiveDT::rejectStep(), MultiApp::restore(), FEProblemBase::restoreMultiApps(), SimplePredictor::shouldApply(), Checkpoint::shouldOutput(), SubProblem::showFunctorRequestors(), SubProblem::showFunctors(), FullSolveMultiApp::showStatusMessage(), FEProblemSolve::solve(), FixedPointSolve::solve(), NonlinearSystem::solve(), EigenProblem::solve(), LStableDirk2::solve(), LStableDirk3::solve(), ImplicitMidpoint::solve(), ExplicitTVDRK2::solve(), AStableDirk4::solve(), LStableDirk4::solve(), ExplicitRK2::solve(), TransientMultiApp::solveStep(), FixedPointSolve::solveStep(), PerfGraphLivePrint::start(), AB2PredictorCorrector::step(), NonlinearEigen::takeStep(), Transient::takeStep(), Console::writeTimestepInformation(), Console::writeVariableNorms(), and FEProblemBase::~FEProblemBase().
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Constraints storage object.
Definition at line 885 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::addConstraint(), NonlinearSystemBase::checkKernelCoverage(), NonlinearSystemBase::computeResidualInternal(), NonlinearSystemBase::constraintJacobians(), NonlinearSystemBase::constraintResiduals(), NonlinearSystemBase::customSetup(), NonlinearSystemBase::enforceNodalConstraintsJacobian(), NonlinearSystemBase::enforceNodalConstraintsResidual(), NonlinearSystemBase::findImplicitGeometricCouplingEntries(), NonlinearSystemBase::getConstraintWarehouse(), NonlinearSystemBase::initialSetup(), NonlinearSystemBase::jacobianSetup(), NonlinearSystemBase::overwriteNodeFace(), NonlinearSystemBase::residualSetup(), NonlinearSystemBase::setConstraintSecondaryValues(), NonlinearSystemBase::timestepSetup(), and NonlinearSystemBase::updateActive().
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Definition at line 691 of file NonlinearSystemBase.h.
Referenced by SolutionHistory::output(), and NonlinearSystemBase::preSolve().
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Definition at line 692 of file NonlinearSystemBase.h.
Referenced by FEProblemBase::checkNonlinearConvergence(), SolutionHistory::output(), and NonlinearSystemBase::preSolve().
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solution vector from nonlinear solver
Definition at line 797 of file NonlinearSystemBase.h.
Referenced by NonlinearSystem::computeScalingJacobian(), NonlinearEigenSystem::computeScalingJacobian(), NonlinearSystem::computeScalingResidual(), NonlinearEigenSystem::computeScalingResidual(), NonlinearSystemBase::currentSolution(), NonlinearSystemBase::init(), NonlinearSystemBase::restoreSolutions(), NonlinearSystemBase::serializeSolution(), NonlinearSystemBase::setSolution(), and NonlinearSystem::solve().
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true if debugging residuals
Definition at line 917 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::computeResidualTags(), and NonlinearSystemBase::debuggingResiduals().
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Name of the top-level split of the decomposition.
Definition at line 904 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::setDecomposition(), NonlinearSystemBase::setupDM(), and NonlinearSystemBase::setupFieldDecomposition().
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Definition at line 853 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::addDGKernel(), NonlinearSystemBase::checkKernelCoverage(), NonlinearSystemBase::customSetup(), NonlinearSystemBase::getDGKernelWarehouse(), NonlinearSystemBase::initialSetup(), NonlinearSystemBase::jacobianSetup(), NonlinearSystemBase::residualSetup(), NonlinearSystemBase::timestepSetup(), and NonlinearSystemBase::updateActive().
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Dirac Kernel storage for each thread.
Definition at line 867 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::addDiracKernel(), NonlinearSystemBase::computeDiracContributions(), NonlinearSystemBase::customSetup(), NonlinearSystemBase::getDiracKernelWarehouse(), NonlinearSystemBase::initialSetup(), NonlinearSystemBase::jacobianSetup(), NonlinearSystemBase::residualSetup(), NonlinearSystemBase::timestepSetup(), and NonlinearSystemBase::updateActive().
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true if DG is active (optimization reasons)
Definition at line 920 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::addDGKernel(), NonlinearSystemBase::customSetup(), NonlinearSystemBase::doingDG(), NonlinearSystemBase::initialSetup(), NonlinearSystemBase::jacobianSetup(), NonlinearSystemBase::needSubdomainMaterialOnSide(), NonlinearSystemBase::residualSetup(), and NonlinearSystemBase::timestepSetup().
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\( {du^dot}\over{du} \)
Definition at line 819 of file NonlinearSystemBase.h.
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\( {du^dotdot}\over{du} \)
Definition at line 821 of file NonlinearSystemBase.h.
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Definition at line 45 of file DumpObjectsNonlinearSystem.h.
Referenced by RHS().
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Element Dampers for each thread.
Definition at line 870 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::addDamper(), NonlinearSystemBase::computeDamping(), NonlinearSystemBase::customSetup(), NonlinearSystemBase::getElementDamperWarehouse(), NonlinearSystemBase::initialSetup(), NonlinearSystemBase::jacobianSetup(), NonlinearSystemBase::residualSetup(), NonlinearSystemBase::subdomainSetup(), NonlinearSystemBase::timestepSetup(), and NonlinearSystemBase::updateActive().
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Definition at line 927 of file SystemBase.h.
Referenced by NonlinearSystemBase::addBoundaryCondition(), NonlinearSystemBase::addConstraint(), NonlinearSystemBase::addDamper(), NonlinearSystemBase::addDGKernel(), NonlinearSystemBase::addDiracKernel(), NonlinearSystemBase::addInterfaceKernel(), MooseEigenSystem::addKernel(), AuxiliarySystem::addKernel(), NonlinearSystemBase::addKernel(), NonlinearSystemBase::addNodalKernel(), AuxiliarySystem::addScalarKernel(), NonlinearSystemBase::addScalarKernel(), NonlinearSystemBase::addSplit(), AuxiliarySystem::addTimeIntegrator(), NonlinearSystemBase::addTimeIntegrator(), and SystemBase::addVariable().
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Definition at line 899 of file NonlinearSystemBase.h.
Referenced by NonlinearSystem::setupColoringFiniteDifferencedPreconditioner(), and NonlinearSystem::solve().
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Definition at line 685 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::addDotVectors(), NonlinearSystemBase::assembleScalingVector(), NonlinearSystemBase::augmentSparsity(), NonlinearSystemBase::checkKernelCoverage(), NonlinearSystemBase::computeDamping(), NonlinearSystemBase::computeDiracContributions(), NonlinearSystemBase::computeJacobian(), NonlinearSystemBase::computeJacobianBlocks(), NonlinearSystemBase::computeJacobianInternal(), NonlinearSystemBase::computeNodalBCs(), NonlinearSystemBase::computeNodalBCsResidualAndJacobian(), NonlinearSystemBase::computeResidualAndJacobianInternal(), NonlinearSystemBase::computeResidualInternal(), NonlinearSystemBase::computeResidualTags(), NonlinearSystemBase::computeScalarKernelsJacobians(), NonlinearSystemBase::computeScaling(), NonlinearSystem::computeScalingJacobian(), NonlinearSystem::computeScalingResidual(), NonlinearSystemBase::computeTimeDerivatives(), NonlinearSystemBase::constraintJacobians(), NonlinearSystemBase::constraintResiduals(), NonlinearSystem::converged(), NonlinearSystemBase::customSetup(), DMMooseGetEmbedding_Private(), DMSetFromOptions_Moose(), DMSetUp_Moose_Pre(), MooseEigenSystem::eigenKernelOnCurrent(), MooseEigenSystem::eigenKernelOnOld(), NonlinearSystemBase::enforceNodalConstraintsJacobian(), NonlinearSystemBase::enforceNodalConstraintsResidual(), NonlinearSystemBase::getResidualNonTimeVector(), NonlinearSystemBase::getResidualTimeVector(), NonlinearSystemBase::init(), NonlinearSystemBase::initialSetup(), NonlinearSystemBase::jacobianSetup(), NonlinearSystemBase::NonlinearSystemBase(), NonlinearSystemBase::overwriteNodeFace(), NonlinearSystemBase::reinitNodeFace(), NonlinearSystem::residualAndJacobianTogether(), NonlinearSystemBase::residualSetup(), NonlinearSystemBase::setConstraintSecondaryValues(), NonlinearSystemBase::setInitialSolution(), NonlinearSystem::solve(), and NonlinearSystemBase::timestepSetup().
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Definition at line 931 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::finalNonlinearResidual(), and NonlinearSystem::solve().
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General Dampers.
Definition at line 876 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::addDamper(), NonlinearSystemBase::computeDamping(), NonlinearSystemBase::customSetup(), NonlinearSystemBase::initialSetup(), NonlinearSystemBase::jacobianSetup(), NonlinearSystemBase::residualSetup(), NonlinearSystemBase::timestepSetup(), and NonlinearSystemBase::updateActive().
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If there is any Kernel or IntegratedBC having diag_save_in.
Definition at line 944 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::addBoundaryCondition(), NonlinearSystemBase::addDGKernel(), MooseEigenSystem::addKernel(), NonlinearSystemBase::addKernel(), NonlinearSystemBase::addNodalKernel(), NonlinearSystemBase::computeJacobianInternal(), and NonlinearSystemBase::hasDiagSaveIn().
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If there is a nodal BC having diag_save_in.
Definition at line 950 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::addBoundaryCondition(), NonlinearSystemBase::computeJacobianInternal(), and NonlinearSystemBase::hasDiagSaveIn().
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If there is a nodal BC having save_in.
Definition at line 947 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::addBoundaryCondition(), NonlinearSystemBase::computeResidualTags(), and NonlinearSystemBase::hasSaveIn().
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If there is any Kernel or IntegratedBC having save_in.
Definition at line 941 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::addBoundaryCondition(), NonlinearSystemBase::addDGKernel(), MooseEigenSystem::addKernel(), NonlinearSystemBase::addKernel(), NonlinearSystemBase::addNodalKernel(), NonlinearSystemBase::computeNodalBCs(), and NonlinearSystemBase::hasSaveIn().
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Whether or not the system can be decomposed into splits.
Definition at line 902 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::setDecomposition(), and NonlinearSystemBase::setupFieldDecomposition().
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A container for variables that do not partipate in autoscaling.
Definition at line 976 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::ignoreVariablesForAutoscaling(), and NonlinearSystemBase::setupScalingData().
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increment vector
Definition at line 888 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::computeDamping(), NonlinearSystemBase::reinitIncrementAtNodeForDampers(), NonlinearSystemBase::reinitIncrementAtQpsForDampers(), and NonlinearSystemBase::setupDampers().
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Definition at line 690 of file NonlinearSystemBase.h.
Referenced by FEProblemBase::checkNonlinearConvergence().
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Definition at line 689 of file NonlinearSystemBase.h.
Referenced by EigenExecutionerBase::inversePowerIteration(), Moose::PetscSupport::petscNonlinearConverged(), and NonlinearSystem::solve().
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BoundaryCondition Warhouses
Definition at line 860 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::addBoundaryCondition(), NonlinearSystemBase::customSetup(), NonlinearSystemBase::getIntegratedBCWarehouse(), NonlinearSystemBase::initialSetup(), NonlinearSystemBase::jacobianSetup(), NonlinearSystemBase::needBoundaryMaterialOnSide(), NonlinearSystemBase::residualSetup(), NonlinearSystemBase::timestepSetup(), and NonlinearSystemBase::updateActive().
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Definition at line 854 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::addInterfaceKernel(), NonlinearSystemBase::customSetup(), NonlinearSystemBase::getInterfaceKernelWarehouse(), NonlinearSystemBase::initialSetup(), NonlinearSystemBase::jacobianSetup(), NonlinearSystemBase::needInterfaceMaterialOnSide(), NonlinearSystemBase::residualSetup(), NonlinearSystemBase::timestepSetup(), and NonlinearSystemBase::updateActive().
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Tag for non-time contribution Jacobian.
Definition at line 844 of file NonlinearSystemBase.h.
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Tag for system contribution Jacobian.
Definition at line 847 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::NonlinearSystemBase(), and NonlinearSystemBase::systemMatrixTag().
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Definition at line 851 of file NonlinearSystemBase.h.
Referenced by MooseEigenSystem::addKernel(), NonlinearSystemBase::addKernel(), NonlinearSystemBase::checkKernelCoverage(), NonlinearSystemBase::containsTimeKernel(), NonlinearSystemBase::customSetup(), NonlinearSystemBase::getKernelWarehouse(), NonlinearSystemBase::initialSetup(), NonlinearSystemBase::jacobianSetup(), NonlinearSystemBase::residualSetup(), NonlinearSystemBase::subdomainSetup(), NonlinearSystemBase::timestepSetup(), and NonlinearSystemBase::updateActive().
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KSP norm type.
Definition at line 894 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::getMooseKSPNormType(), and NonlinearSystemBase::setMooseKSPNormType().
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Definition at line 688 of file NonlinearSystemBase.h.
Referenced by FEProblemBase::checkNonlinearConvergence(), and NonlinearSystemBase::nonlinearNorm().
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Active flags for tagged matrices.
Definition at line 951 of file SystemBase.h.
Referenced by SystemBase::activeAllMatrixTags(), SystemBase::activeMatrixTag(), SystemBase::deactiveAllMatrixTags(), SystemBase::deactiveMatrixTag(), and SystemBase::matrixTagActive().
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Maximum number of dofs for any one variable on any one element.
Definition at line 967 of file SystemBase.h.
Referenced by SystemBase::assignMaxVarNDofsPerElem(), and SystemBase::getMaxVarNDofsPerElem().
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Maximum number of dofs for any one variable on any one node.
Definition at line 970 of file SystemBase.h.
Referenced by SystemBase::assignMaxVarNDofsPerNode(), and SystemBase::getMaxVarNDofsPerNode().
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Maximum variable number.
Definition at line 938 of file SystemBase.h.
Referenced by SystemBase::addVariable(), and SystemBase::getMaxVariableNumber().
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Definition at line 929 of file SystemBase.h.
Referenced by SystemBase::addVariable(), NonlinearSystemBase::assembleScalingVector(), SystemBase::augmentSendList(), NonlinearSystemBase::checkKernelCoverage(), NonlinearSystemBase::computeDamping(), AuxiliarySystem::computeElementalVarsHelper(), NonlinearSystemBase::computeJacobianBlocks(), NonlinearSystemBase::computeJacobianInternal(), AuxiliarySystem::computeMortarNodalVars(), NonlinearSystemBase::computeNodalBCs(), NonlinearSystemBase::computeNodalBCsResidualAndJacobian(), AuxiliarySystem::computeNodalVarsHelper(), NonlinearSystemBase::computeResidualAndJacobianInternal(), NonlinearSystemBase::computeResidualInternal(), NonlinearSystemBase::constraintJacobians(), NonlinearSystemBase::constraintResiduals(), NonlinearSystemBase::findImplicitGeometricCouplingEntries(), NonlinearSystemBase::getNodeDofs(), SystemBase::mesh(), NonlinearSystemBase::overwriteNodeFace(), NonlinearSystemBase::reinitNodeFace(), NonlinearSystemBase::setConstraintSecondaryValues(), NonlinearSystemBase::setInitialSolution(), SystemBase::setVariableGlobalDoFs(), and SystemBase::zeroVariables().
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Definition at line 925 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::nNonlinearIterations(), and NonlinearSystem::solve().
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Definition at line 926 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::nLinearIterations(), and NonlinearSystem::solve().
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Total number of residual evaluations that have been performed.
Definition at line 929 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::computeResidualTags(), and NonlinearSystemBase::nResidualEvaluations().
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The name of this system.
Definition at line 931 of file SystemBase.h.
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Whether or not a ghosted copy of the residual needs to be made.
Definition at line 915 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::computeResidualInternal(), NonlinearSystemBase::computeResidualTags(), NonlinearSystemBase::constraintResiduals(), NonlinearSystemBase::getResidualNonTimeVector(), NonlinearSystemBase::getResidualTimeVector(), and NonlinearSystemBase::residualGhosted().
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Matrix tags to temporarily store all tags associated with the current system.
Definition at line 830 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::computeJacobian(), and NonlinearSystemBase::computeJacobianBlocks().
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Vector tags to temporarily store all tags associated with the current system.
Definition at line 827 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::computeNodalBCs(), and NonlinearSystemBase::computeResidualTag().
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Definition at line 861 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::addBoundaryCondition(), NonlinearEigenSystem::checkIntegrity(), NonlinearSystemBase::computeJacobianBlocks(), NonlinearSystemBase::computeJacobianInternal(), NonlinearSystemBase::computeNodalBCs(), NonlinearSystemBase::computeNodalBCsResidualAndJacobian(), NonlinearSystemBase::customSetup(), NonlinearSystemBase::getNodalBCWarehouse(), NonlinearSystemBase::initialSetup(), NonlinearSystemBase::jacobianSetup(), NonlinearSystemBase::residualSetup(), NonlinearSystemBase::timestepSetup(), and NonlinearSystemBase::updateActive().
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Nodal Dampers for each thread.
Definition at line 873 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::addDamper(), NonlinearSystemBase::computeDamping(), NonlinearSystemBase::customSetup(), NonlinearSystemBase::getNodalDamperWarehouse(), NonlinearSystemBase::initialSetup(), NonlinearSystemBase::jacobianSetup(), NonlinearSystemBase::residualSetup(), NonlinearSystemBase::subdomainSetup(), NonlinearSystemBase::timestepSetup(), and NonlinearSystemBase::updateActive().
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NodalKernels for each thread.
Definition at line 879 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::addNodalKernel(), NonlinearSystemBase::checkKernelCoverage(), NonlinearSystemBase::computeJacobianInternal(), NonlinearSystemBase::computeResidualInternal(), NonlinearSystemBase::customSetup(), NonlinearSystemBase::initialSetup(), NonlinearSystemBase::jacobianSetup(), NonlinearSystemBase::residualSetup(), NonlinearSystemBase::subdomainSetup(), NonlinearSystemBase::timestepSetup(), and NonlinearSystemBase::updateActive().
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Definition at line 550 of file NonlinearSystemBase.h.
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Map variable number to its pointer.
Definition at line 976 of file SystemBase.h.
Referenced by SystemBase::addVariable(), and SystemBase::getVariable().
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Whether to include off diagonals when determining automatic scaling factors.
Definition at line 979 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::initialSetup(), and NonlinearSystemBase::offDiagonalsInAutoScaling().
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Preconditioning side.
Definition at line 892 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::getPCSide(), and NonlinearSystemBase::setPCSide().
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The MooseApp that owns the PerfGraph.
Definition at line 124 of file PerfGraphInterface.h.
Referenced by PerfGraphInterface::perfGraph().
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Preconditioner.
Definition at line 890 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::getPreconditioner(), NonlinearSystemBase::setPreconditioner(), and NonlinearSystem::setupFiniteDifferencedPreconditioner().
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If predictor is active, this is non-NULL.
Definition at line 934 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::getPredictor(), NonlinearSystemBase::onTimestepBegin(), NonlinearSystemBase::setInitialSolution(), and NonlinearSystemBase::setPredictor().
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A prefix to use for all sections.
Definition at line 127 of file PerfGraphInterface.h.
Referenced by PerfGraphInterface::timedSectionName().
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Definition at line 862 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::addBoundaryCondition(), NonlinearSystemBase::setInitialSolution(), and NonlinearSystemBase::updateActive().
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Definition at line 938 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::printAllVariableNorms().
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residual vector for non-time contributions
Definition at line 838 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::computeNodalBCs(), NonlinearSystemBase::computeResidualAndJacobianTags(), NonlinearSystemBase::computeResidualInternal(), NonlinearSystemBase::computeResidualTags(), NonlinearSystemBase::getResidualNonTimeVector(), NonlinearSystemBase::residualGhosted(), and NonlinearSystem::stopSolve().
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Tag for non-time contribution residual.
Definition at line 836 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::getResidualNonTimeVector(), NonlinearSystemBase::nonTimeVectorTag(), and NonlinearSystemBase::residualGhosted().
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Used for the residual vector from PETSc.
Definition at line 841 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::NonlinearSystemBase(), and NonlinearSystemBase::residualVectorTag().
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residual vector for time contributions
Definition at line 833 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::computeNodalBCs(), NonlinearSystemBase::getResidualTimeVector(), NonlinearSystemBase::residualGhosted(), and NonlinearSystem::stopSolve().
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Tag for time contribution residual.
Definition at line 824 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::getResidualTimeVector(), NonlinearSystemBase::residualGhosted(), and NonlinearSystemBase::timeVectorTag().
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The param that indicates the weighting of the residual vs the Jacobian in determining variable scaling parameters.
A value of 1 indicates pure residual-based scaling. A value of 0 indicates pure Jacobian-based scaling
Definition at line 965 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::autoScalingParam(), NonlinearSystemBase::computeScaling(), and NonlinearSystem::init().
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Copy of the residual vector, or nullptr if a copy is not needed.
Definition at line 806 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::computeResidualInternal(), NonlinearSystemBase::init(), and NonlinearSystemBase::residualCopy().
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ghosted form of the residual
Definition at line 799 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::computeResidualInternal(), NonlinearSystemBase::computeResidualTags(), NonlinearSystemBase::constraintResiduals(), and NonlinearSystemBase::residualGhosted().
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Definition at line 958 of file SystemBase.h.
Referenced by SystemBase::restoreOldSolutions(), and SystemBase::saveOldSolutions().
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Definition at line 959 of file SystemBase.h.
Referenced by SystemBase::restoreOldSolutions(), and SystemBase::saveOldSolutions().
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Definition at line 954 of file SystemBase.h.
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Definition at line 955 of file SystemBase.h.
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Definition at line 852 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::addScalarKernel(), NonlinearSystemBase::checkKernelCoverage(), NonlinearSystemBase::computeResidualInternal(), NonlinearSystemBase::computeScalarKernelsJacobians(), NonlinearSystemBase::customSetup(), NonlinearSystemBase::initialSetup(), NonlinearSystemBase::jacobianSetup(), NonlinearSystemBase::residualSetup(), NonlinearSystemBase::timestepSetup(), and NonlinearSystemBase::updateActive().
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A container of variable groupings that can be used in scaling calculations.
This can be useful for simulations in which vector-like variables are split into invidual scalar-field components like for solid/fluid mechanics
Definition at line 970 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::scalingGroupVariables(), and NonlinearSystemBase::setupScalingData().
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A diagonal matrix used for computing scaling.
Definition at line 982 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::computeScaling(), NonlinearSystem::computeScalingJacobian(), NonlinearEigenSystem::computeScalingJacobian(), and NonlinearSystemBase::initialSetup().
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Serialized version of the solution vector, or nullptr if a serialized solution is not needed.
Definition at line 803 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::init(), NonlinearSystemBase::serializedSolution(), NonlinearSystemBase::serializeSolution(), and NonlinearSystemBase::setSolution().
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Whether or not the solution states have been initialized.
Definition at line 985 of file SystemBase.h.
Referenced by SystemBase::initSolutionState(), and SystemBase::solutionStatesInitialized().
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Decomposition splits.
Definition at line 882 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::addSplit(), and NonlinearSystemBase::getSplit().
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Definition at line 924 of file SystemBase.h.
Referenced by SystemBase::activeAllMatrixTags(), SystemBase::activeMatrixTag(), SystemBase::addMatrix(), SystemBase::addScalingVector(), SystemBase::addVariable(), SystemBase::addVector(), SystemBase::associateMatrixToTag(), SystemBase::associateVectorToTag(), SystemBase::augmentSendList(), SystemBase::closeTaggedVector(), SystemBase::computingScalingJacobian(), SystemBase::copyVars(), SystemBase::deactiveAllMatrixTags(), SystemBase::deactiveMatrixTag(), SystemBase::disassociateDefaultMatrixTags(), SystemBase::disassociateDefaultVectorTags(), SystemBase::disassociateMatrixFromTag(), SystemBase::disassociateVectorFromTag(), SystemBase::getMatrix(), NonlinearSystemBase::getResidualNonTimeVector(), NonlinearSystemBase::getResidualTimeVector(), SystemBase::getVector(), SystemBase::matrixTagActive(), SystemBase::needSolutionState(), SystemBase::prepare(), SystemBase::prepareFace(), SystemBase::reinitElem(), SystemBase::removeMatrix(), SystemBase::removeVector(), NonlinearSystemBase::residualGhosted(), NonlinearSystemBase::setSolution(), SystemBase::setVariableGlobalDoFs(), SystemBase::subproblem(), SystemBase::zeroTaggedVector(), and SystemBase::zeroVariables().
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Definition at line 686 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::init(), NonlinearSystemBase::NonlinearSystemBase(), NonlinearSystemBase::restoreSolutions(), NonlinearSystemBase::serializedSolution(), NonlinearSystemBase::serializeSolution(), NonlinearSystemBase::setInitialSolution(), NonlinearSystemBase::setupDampers(), NonlinearSystemBase::solutionInternal(), and NonlinearSystemBase::system().
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Tagged matrices (pointer)
Definition at line 949 of file SystemBase.h.
Referenced by SystemBase::associateMatrixToTag(), SystemBase::disassociateMatrixFromTag(), SystemBase::getMatrix(), SystemBase::hasMatrix(), and SystemBase::removeMatrix().
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Tagged vectors (pointer)
Definition at line 947 of file SystemBase.h.
Referenced by SystemBase::associateVectorToTag(), SystemBase::disassociateVectorFromTag(), SystemBase::getVector(), SystemBase::hasVector(), and SystemBase::removeVector().
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Time integrator.
Definition at line 973 of file SystemBase.h.
Referenced by AuxiliarySystem::addTimeIntegrator(), NonlinearSystemBase::addTimeIntegrator(), DisplacedSystem::addTimeIntegrator(), AuxiliarySystem::compute(), NonlinearSystemBase::computeResidualAndJacobianTags(), NonlinearSystemBase::computeResidualTags(), NonlinearSystemBase::computeTimeDerivatives(), SystemBase::getSharedTimeIntegrator(), SystemBase::getTimeIntegrator(), NonlinearSystemBase::onTimestepBegin(), NonlinearSystem::solve(), and NonlinearEigenSystem::solve().
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solution vector for u^dot
Definition at line 809 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::addDotVectors(), NonlinearSystemBase::setSolutionUDot(), and NonlinearSystemBase::solutionUDot().
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old solution vector for u^dot
Definition at line 814 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::addDotVectors(), NonlinearSystemBase::setSolutionUDotOld(), and NonlinearSystemBase::solutionUDotOld().
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solution vector for u^dotdot
Definition at line 811 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::addDotVectors(), NonlinearSystemBase::setSolutionUDotDot(), and NonlinearSystemBase::solutionUDotDot().
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old solution vector for u^dotdot
Definition at line 816 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::addDotVectors(), NonlinearSystemBase::setSolutionUDotDotOld(), and NonlinearSystemBase::solutionUDotDotOld().
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Whether or not to use a FieldSplitPreconditioner matrix based on the decomposition.
Definition at line 906 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::haveFieldSplitPreconditioner(), and NonlinearSystemBase::useFieldSplitPreconditioner().
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Whether or not to use a finite differenced preconditioner.
Definition at line 897 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::haveFiniteDifferencedPreconditioner(), NonlinearSystem::solve(), and NonlinearSystemBase::useFiniteDifferencedPreconditioner().
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Container for the dof indices of a given variable.
Definition at line 988 of file SystemBase.h.
Referenced by SystemBase::getVariableGlobalDoFs(), and SystemBase::setVariableGlobalDoFs().
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default kind of variables in this system
Definition at line 962 of file SystemBase.h.
Referenced by SystemBase::varKind().
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Map of variables (variable id -> array of subdomains where it lives)
Definition at line 936 of file SystemBase.h.
Referenced by SystemBase::addVariable(), SystemBase::getSubdomainsForVar(), and SystemBase::getVariableBlocks().
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Definition at line 964 of file SystemBase.h.
Referenced by SystemBase::addVariableToCopy(), SystemBase::copyVars(), and SystemBase::hasVarCopy().
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Container to hold flag if variable is to participate in autoscaling.
Definition at line 973 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::computeScaling(), and NonlinearSystemBase::setupScalingData().
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Variable warehouses (one for each thread)
Definition at line 934 of file SystemBase.h.
Referenced by NonlinearSystemBase::addBoundaryCondition(), NonlinearSystemBase::addInterfaceKernel(), AuxiliarySystem::addVariable(), SystemBase::addVariable(), SystemBase::applyScalingFactors(), NonlinearSystemBase::assembleScalingVector(), SystemBase::clearAllDofIndices(), AuxiliarySystem::compute(), SystemBase::customSetup(), SystemBase::getActualFieldVariable(), SystemBase::getFieldVariable(), SystemBase::getFVVariable(), AuxiliarySystem::getMinQuadratureOrder(), SystemBase::getMinQuadratureOrder(), SystemBase::getScalarVariable(), SystemBase::getScalarVariables(), SystemBase::getVariable(), SystemBase::getVariableNames(), SystemBase::getVariables(), SystemBase::initialSetup(), SystemBase::jacobianSetup(), SystemBase::nFieldVariables(), SystemBase::nFVVariables(), SystemBase::nVariables(), SystemBase::prepare(), SystemBase::prepareFace(), SystemBase::prepareLowerD(), SystemBase::prepareNeighbor(), SystemBase::reinitElem(), SystemBase::reinitElemFace(), SystemBase::reinitLowerD(), SystemBase::reinitNeighbor(), SystemBase::reinitNeighborFace(), SystemBase::reinitNode(), SystemBase::reinitNodeFace(), SystemBase::reinitNodes(), SystemBase::reinitNodesNeighbor(), SystemBase::reinitScalars(), SystemBase::residualSetup(), SystemBase::setActiveScalarVariableCoupleableVectorTags(), SystemBase::setActiveVariableCoupleableVectorTags(), NonlinearSystemBase::setupScalingData(), SystemBase::subdomainSetup(), and SystemBase::timestepSetup().
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Definition at line 941 of file SystemBase.h.
Referenced by SystemBase::addVariableToZeroOnJacobian(), and SystemBase::zeroVariablesForJacobian().
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Definition at line 940 of file SystemBase.h.
Referenced by SystemBase::addVariableToZeroOnResidual(), and SystemBase::zeroVariablesForResidual().
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vectors that will be zeroed before a residual computation
Definition at line 923 of file NonlinearSystemBase.h.
Referenced by NonlinearSystemBase::computeResidualTags(), and NonlinearSystemBase::zeroVectorForResidual().
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True if printing out additional information.
Definition at line 982 of file SystemBase.h.
Referenced by SystemBase::applyScalingFactors(), and SystemBase::setVerboseFlag().