120 #include "libmesh/exodusII_io.h" 121 #include "libmesh/quadrature.h" 122 #include "libmesh/coupling_matrix.h" 123 #include "libmesh/nonlinear_solver.h" 124 #include "libmesh/sparse_matrix.h" 125 #include "libmesh/string_to_enum.h" 126 #include "libmesh/fe_interface.h" 127 #include "libmesh/enum_norm_type.h" 128 #include "libmesh/petsc_solver_exception.h" 130 #include "metaphysicl/dualnumber.h" 153 params.
addParam<
unsigned int>(
"null_space_dimension", 0,
"The dimension of the nullspace");
155 "transpose_null_space_dimension", 0,
"The dimension of the transpose nullspace");
157 "near_null_space_dimension", 0,
"The dimension of the near nullspace");
160 "Whether or not to actually solve the Nonlinear system. " 161 "This is handy in the case that all you want to do is " 162 "execute AuxKernels, Transfers, etc. without actually " 164 params.
addParam<
bool>(
"use_nonlinear",
166 "Determines whether to use a Nonlinear vs a " 167 "Eigenvalue system (Automatically determined based " 169 params.
addParam<
bool>(
"error_on_jacobian_nonzero_reallocation",
170 "This causes PETSc to error if it had to reallocate memory in the Jacobian " 171 "matrix due to not having enough nonzeros");
172 params.
addParam<
bool>(
"ignore_zeros_in_jacobian",
174 "Do not explicitly store zero values in " 175 "the Jacobian matrix if true");
176 params.
addParam<
bool>(
"force_restart",
178 "EXPERIMENTAL: If true, a sub_app may use a " 179 "restart file instead of using of using the master " 183 "True to skip additional data in equation system for restart.",
184 "This parameter is no longer used, as we do not load additional " 185 "vectors by default with restart");
186 params.
addParam<
bool>(
"skip_nl_system_check",
188 "True to skip the NonlinearSystem check for work to do (e.g. Make sure " 189 "that there are variables to solve for).");
190 params.
addParam<
bool>(
"allow_initial_conditions_with_restart",
192 "True to allow the user to specify initial conditions when restarting. " 193 "Initial conditions can override any restarted field");
195 auto coverage_check_description = [](std::string scope, std::string list_param_name)
197 return "Controls, if and how a " + scope +
198 " subdomain coverage check is performed. " 199 "With 'TRUE' or 'ON' all subdomains are checked (the default). Setting 'FALSE' or 'OFF' " 200 "will disable the check for all subdomains. " 201 "To exclude a predefined set of subdomains 'SKIP_LIST' is to " 202 "be used, while the subdomains to skip are to be defined in the parameter '" +
204 "'. To limit the check to a list of subdomains, 'ONLY_LIST' is to " 205 "be used (again, using the parameter '" +
206 list_param_name +
"').";
209 params.
addParam<std::vector<SubdomainName>>(
212 "List of subdomains for kernel coverage and material coverage checks. Setting this parameter " 213 "is equivalent to setting 'kernel_coverage_block_list' and 'material_coverage_block_list' as " 214 "well as using 'ONLY_LIST' as the coverage check mode.");
216 MooseEnum kernel_coverage_check_modes(
"FALSE TRUE OFF ON SKIP_LIST ONLY_LIST",
"TRUE");
218 kernel_coverage_check_modes,
219 coverage_check_description(
"kernel",
"kernel_coverage_block_list"));
220 params.
addParam<std::vector<SubdomainName>>(
221 "kernel_coverage_block_list",
223 "List of subdomains for kernel coverage check. The meaning of this list is controlled by the " 224 "parameter 'kernel_coverage_check' (whether this is the list of subdomains to be checked, " 225 "not to be checked or not taken into account).");
227 "boundary_restricted_node_integrity_check",
229 "Set to false to disable checking of boundary restricted nodal object variable dependencies, " 230 "e.g. are the variable dependencies defined on the selected boundaries?");
231 params.
addParam<
bool>(
"boundary_restricted_elem_integrity_check",
233 "Set to false to disable checking of boundary restricted elemental object " 234 "variable dependencies, e.g. are the variable dependencies defined on the " 235 "selected boundaries?");
236 MooseEnum material_coverage_check_modes(
"FALSE TRUE OFF ON SKIP_LIST ONLY_LIST",
"TRUE");
238 "material_coverage_check",
239 material_coverage_check_modes,
240 coverage_check_description(
"material",
"material_coverage_block_list"));
241 params.
addParam<std::vector<SubdomainName>>(
242 "material_coverage_block_list",
244 "List of subdomains for material coverage check. The meaning of this list is controlled by " 245 "the parameter 'material_coverage_check' (whether this is the list of subdomains to be " 246 "checked, not to be checked or not taken into account).");
248 params.
addParam<
bool>(
"fv_bcs_integrity_check",
250 "Set to false to disable checking of overlapping Dirichlet and Flux BCs " 251 "and/or multiple DirichletBCs per sideset");
254 "material_dependency_check",
true,
"Set to false to disable material dependency check");
255 params.
addParam<
bool>(
"parallel_barrier_messaging",
257 "Displays messaging from parallel " 258 "barrier notifications when executing " 259 "or transferring to/from Multiapps " 262 MooseEnum verbosity(
"false true extra",
"false");
265 "Set to 'true' to have the problem report on any object created. Set " 266 "to 'extra' to also display all parameters.");
267 params.
addParam<
bool>(
"verbose_multiapps",
269 "Set to True to enable verbose screen printing related to MultiApps");
273 "Set to True to enable verbose screen printing related to solution restoration");
275 params.
addParam<FileNameNoExtension>(
"restart_file_base",
276 "File base name used for restart (e.g. " 277 "<path>/<filebase> or <path>/LATEST to " 278 "grab the latest file available)");
280 params.
addParam<std::vector<std::vector<TagName>>>(
283 "Extra vectors to add to the system that can be filled by objects which compute residuals " 284 "and Jacobians (Kernels, BCs, etc.) by setting tags on them. The outer index is for which " 285 "nonlinear system the extra tag vectors should be added for");
287 params.
addParam<std::vector<std::vector<TagName>>>(
288 "not_zeroed_tag_vectors",
290 "Extra vector tags which the sytem will not zero when other vector tags are zeroed. " 291 "The outer index is for which nonlinear system the extra tag vectors should be added for");
293 params.
addParam<std::vector<std::vector<TagName>>>(
294 "extra_tag_matrices",
296 "Extra matrices to add to the system that can be filled " 297 "by objects which compute residuals and Jacobians " 298 "(Kernels, BCs, etc.) by setting tags on them. The outer index is for which " 299 "nonlinear system the extra tag vectors should be added for");
301 params.
addParam<std::vector<TagName>>(
302 "extra_tag_solutions",
304 "Extra solution vectors to add to the system that can be used by " 305 "objects for coupling variable values stored in them.");
307 params.
addParam<
bool>(
"previous_nl_solution_required",
309 "True to indicate that this calculation requires a solution vector for " 310 "storing the previous nonlinear iteration.");
312 params.
addParam<std::vector<NonlinearSystemName>>(
313 "nl_sys_names", std::vector<NonlinearSystemName>{
"nl0"},
"The nonlinear system names");
315 params.
addParam<std::vector<LinearSystemName>>(
"linear_sys_names", {},
"The linear system names");
317 params.
addParam<
bool>(
"check_uo_aux_state",
319 "True to turn on a check that no state presents during the evaluation of " 320 "user objects and aux kernels");
327 "allow_invalid_solution",
329 "Set to true to allow convergence even though the solution has been marked as 'invalid'");
330 params.
addParam<
bool>(
"show_invalid_solution_console",
332 "Set to true to show the invalid solution occurance summary in console");
333 params.
addParam<
bool>(
"immediately_print_invalid_solution",
335 "Whether or not to report invalid solution warnings at the time the " 336 "warning is produced instead of after the calculation");
339 "identify_variable_groups_in_nl",
341 "Whether to identify variable groups in nonlinear systems. This affects dof ordering");
344 "regard_general_exceptions_as_errors",
346 "If we catch an exception during residual/Jacobian evaluaton for which we don't have " 347 "specific handling, immediately error instead of allowing the time step to be cut");
349 params.
addParam<
bool>(
"use_hash_table_matrix_assembly",
351 "Whether to assemble matrices using hash tables instead of preallocating " 352 "matrix memory. This can be a good option if the sparsity pattern changes " 353 "throughout the course of the simulation.");
355 "restore_original_nonzero_pattern",
356 "Whether we should reset matrix memory for every Jacobian evaluation. This option is useful " 357 "if the sparsity pattern is constantly changing and you are using hash table assembly or if " 358 "you wish to continually restore the matrix to the originally preallocated sparsity pattern " 359 "computed by relationship managers.");
362 "skip_nl_system_check kernel_coverage_check kernel_coverage_block_list " 363 "boundary_restricted_node_integrity_check " 364 "boundary_restricted_elem_integrity_check material_coverage_check " 365 "material_coverage_block_list fv_bcs_integrity_check " 366 "material_dependency_check check_uo_aux_state error_on_jacobian_nonzero_reallocation",
367 "Simulation checks");
369 "ignore_zeros_in_jacobian identify_variable_groups_in_nl " 370 "use_hash_table_matrix_assembly restore_original_nonzero_pattern",
371 "Nonlinear system(s)");
373 "restart_file_base force_restart allow_initial_conditions_with_restart",
"Restart");
375 "verbose_setup verbose_multiapps verbose_restore parallel_barrier_messaging",
"Verbosity");
377 "null_space_dimension transpose_null_space_dimension near_null_space_dimension",
378 "Null space removal");
380 "extra_tag_vectors extra_tag_matrices extra_tag_solutions not_zeroed_tag_vectors",
381 "Contribution to tagged field data");
383 "allow_invalid_solution show_invalid_solution_console immediately_print_invalid_solution",
384 "Solution validity control");
392 _mesh(*getCheckedPointerParam<
MooseMesh *>(
"mesh")),
394 "equation_systems", nullptr, _mesh)),
396 _solve(getParam<bool>(
"solve")),
398 _time(declareRestartableData<
Real>(
"time")),
399 _time_old(declareRestartableData<
Real>(
"time_old")),
400 _t_step(declareRecoverableData<
int>(
"t_step")),
401 _dt(declareRestartableData<
Real>(
"dt")),
402 _dt_old(declareRestartableData<
Real>(
"dt_old")),
403 _need_to_add_default_nonlinear_convergence(false),
404 _need_to_add_default_multiapp_fixed_point_convergence(false),
405 _need_to_add_default_steady_state_convergence(false),
406 _linear_sys_names(getParam<
std::vector<LinearSystemName>>(
"linear_sys_names")),
407 _num_linear_sys(_linear_sys_names.size()),
408 _linear_systems(_num_linear_sys, nullptr),
409 _current_linear_sys(nullptr),
410 _using_default_nl(!isParamSetByUser(
"nl_sys_names")),
411 _nl_sys_names(!_using_default_nl || (_using_default_nl && !_linear_sys_names.size())
412 ? getParam<
std::vector<NonlinearSystemName>>(
"nl_sys_names")
413 :
std::vector<NonlinearSystemName>()),
414 _num_nl_sys(_nl_sys_names.size()),
415 _nl(_num_nl_sys, nullptr),
416 _current_nl_sys(nullptr),
417 _solver_systems(_num_nl_sys + _num_linear_sys, nullptr),
420 _mesh_divisions(true),
422 "material_props", &_mesh, _material_prop_registry)),
424 "bnd_material_props", &_mesh, _material_prop_registry)),
426 "neighbor_material_props", &_mesh, _material_prop_registry)),
427 _reporter_data(_app),
429 _all_user_objects(_app.getExecuteOnEnum()),
430 _multi_apps(_app.getExecuteOnEnum()),
431 _transient_multi_apps(_app.getExecuteOnEnum()),
432 _transfers(_app.getExecuteOnEnum(), false),
433 _to_multi_app_transfers(_app.getExecuteOnEnum(), false),
434 _from_multi_app_transfers(_app.getExecuteOnEnum(), false),
435 _between_multi_app_transfers(_app.getExecuteOnEnum(), false),
436 #ifdef LIBMESH_ENABLE_AMR
438 _cycles_completed(0),
440 _displaced_mesh(nullptr),
441 _geometric_search_data(*this, _mesh),
443 _reinit_displaced_elem(false),
444 _reinit_displaced_face(false),
445 _reinit_displaced_neighbor(false),
446 _input_file_saved(false),
448 _has_constraints(false),
449 _snesmf_reuse_base(true),
450 _skip_exception_check(false),
451 _snesmf_reuse_base_set_by_user(false),
452 _has_initialized_stateful(false),
453 _const_jacobian(false),
454 _has_jacobian(false),
455 _needs_old_newton_iter(false),
456 _previous_nl_solution_required(getParam<bool>(
"previous_nl_solution_required")),
457 _has_nonlocal_coupling(false),
458 _calculate_jacobian_in_uo(false),
459 _kernel_coverage_check(
461 _kernel_coverage_blocks(getParam<
std::vector<SubdomainName>>(
"kernel_coverage_block_list")),
462 _boundary_restricted_node_integrity_check(
463 getParam<bool>(
"boundary_restricted_node_integrity_check")),
464 _boundary_restricted_elem_integrity_check(
465 getParam<bool>(
"boundary_restricted_elem_integrity_check")),
466 _material_coverage_check(
468 _material_coverage_blocks(getParam<
std::vector<SubdomainName>>(
"material_coverage_block_list")),
469 _fv_bcs_integrity_check(getParam<bool>(
"fv_bcs_integrity_check")),
470 _material_dependency_check(getParam<bool>(
"material_dependency_check")),
471 _uo_aux_state_check(getParam<bool>(
"check_uo_aux_state")),
472 _max_qps(
std::numeric_limits<unsigned
int>::
max()),
474 _has_time_integrator(false),
475 _has_exception(false),
476 _parallel_barrier_messaging(getParam<bool>(
"parallel_barrier_messaging")),
477 _verbose_setup(getParam<
MooseEnum>(
"verbose_setup")),
478 _verbose_multiapps(getParam<bool>(
"verbose_multiapps")),
479 _verbose_restore(getParam<bool>(
"verbose_restore")),
481 _control_warehouse(_app.getExecuteOnEnum(), false),
482 _is_petsc_options_inserted(false),
483 _line_search(nullptr),
484 _using_ad_mat_props(false),
485 _current_ic_state(0),
486 _use_hash_table_matrix_assembly(getParam<bool>(
"use_hash_table_matrix_assembly")),
487 _error_on_jacobian_nonzero_reallocation(
488 isParamValid(
"error_on_jacobian_nonzero_reallocation")
489 ? getParam<bool>(
"error_on_jacobian_nonzero_reallocation")
490 : _app.errorOnJacobianNonzeroReallocation()),
491 _restore_original_nonzero_pattern(isParamValid(
"restore_original_nonzero_pattern")
492 ? getParam<bool>(
"restore_original_nonzero_pattern")
493 : _use_hash_table_matrix_assembly),
494 _ignore_zeros_in_jacobian(getParam<bool>(
"ignore_zeros_in_jacobian")),
495 _preserve_matrix_sparsity_pattern(true),
496 _force_restart(getParam<bool>(
"force_restart")),
497 _allow_ics_during_restart(getParam<bool>(
"allow_initial_conditions_with_restart")),
498 _skip_nl_system_check(getParam<bool>(
"skip_nl_system_check")),
499 _fail_next_system_convergence_check(false),
500 _allow_invalid_solution(getParam<bool>(
"allow_invalid_solution")),
501 _show_invalid_solution_console(getParam<bool>(
"show_invalid_solution_console")),
502 _immediately_print_invalid_solution(getParam<bool>(
"immediately_print_invalid_solution")),
503 _started_initial_setup(false),
504 _has_internal_edge_residual_objects(false),
505 _u_dot_requested(false),
506 _u_dotdot_requested(false),
507 _u_dot_old_requested(false),
508 _u_dotdot_old_requested(false),
511 _print_execution_on(),
512 _identify_variable_groups_in_nl(getParam<bool>(
"identify_variable_groups_in_nl")),
513 _regard_general_exceptions_as_errors(getParam<bool>(
"regard_general_exceptions_as_errors")),
514 _requires_nonlocal_coupling(false)
516 auto checkCoverageCheckConflict =
517 [
this](
const std::string & coverage_check,
519 const std::vector<SubdomainName> & coverage_blocks) ->
void 523 if (coverage_blocks.size() > 1)
524 if (std::find(coverage_blocks.begin(), coverage_blocks.end(),
"ANY_BLOCK_ID") !=
525 coverage_blocks.end())
527 "The list of blocks used for ",
529 " cannot contain 'ANY_BLOCK_ID' along with other blocks. ");
532 checkCoverageCheckConflict(
534 checkCoverageCheckConflict(
540 ADReal::do_derivatives =
true;
604 std::string restart_file_base = getParam<FileNameNoExtension>(
"restart_file_base");
611 if (restart_file_base.size())
629 #if !PETSC_RELEASE_LESS_THAN(3, 12, 0) 648 mooseWarning(
"Displaced mesh was requested but the displaced problem does not exist. " 649 "Regular mesh will be returned");
657 auto & vectors = getParam<std::vector<std::vector<TagName>>>(
"extra_tag_vectors");
659 for (
auto & vector : vectors[sys_num])
665 auto & not_zeroed_vectors = getParam<std::vector<std::vector<TagName>>>(
"not_zeroed_tag_vectors");
666 for (
const auto sys_num :
index_range(not_zeroed_vectors))
667 for (
auto & vector : not_zeroed_vectors[sys_num])
678 auto & matrices = getParam<std::vector<std::vector<TagName>>>(
"extra_tag_matrices");
680 for (
auto & matrix : matrices[sys_num])
687 sys->sizeVariableMatrixData();
688 _aux->sizeVariableMatrixData();
694 for (
auto & vector :
getParam<std::vector<TagName>>(
"extra_tag_solutions"))
713 sys->associateVectorToTag(*sys->system().current_local_solution.get(), tag);
714 _aux->associateVectorToTag(*
_aux->system().current_local_solution.get(), tag);
721 sys->needSolutionState(state, iteration_type);
722 _aux->needSolutionState(state, iteration_type);
733 _assembly[i].resize(solver_systems.size());
735 _assembly[i][j] = std::make_unique<Assembly>(*solver_systems[j], i);
741 std::vector<std::shared_ptr<NonlinearSystemBase>> & nls)
743 TIME_SECTION(
"initNullSpaceVectors", 5,
"Initializing Null Space Vectors");
745 unsigned int dimNullSpace =
parameters.
get<
unsigned int>(
"null_space_dimension");
746 unsigned int dimTransposeNullSpace =
747 parameters.
get<
unsigned int>(
"transpose_null_space_dimension");
748 unsigned int dimNearNullSpace =
parameters.
get<
unsigned int>(
"near_null_space_dimension");
749 for (
unsigned int i = 0; i < dimNullSpace; ++i)
751 std::ostringstream oss;
755 for (
auto & nl : nls)
759 for (
unsigned int i = 0; i < dimTransposeNullSpace; ++i)
761 std::ostringstream oss;
765 for (
auto & nl : nls)
769 for (
unsigned int i = 0; i < dimNearNullSpace; ++i)
771 std::ostringstream oss;
775 for (
auto & nl : nls)
790 for (
unsigned int i = 0; i <
n_threads; i++)
806 #if !PETSC_RELEASE_LESS_THAN(3, 12, 0) 811 CHKERRABORT(this->
comm().
get(), ierr);
820 TIME_SECTION(
"setCoordSystem", 5,
"Setting Coordinate System");
835 std::vector<const DofMap *> dof_maps(
es().n_systems());
839 dof_maps[i] = &sys.get_dof_map();
842 std::make_unique<ConstElemRange>(
_mesh.
getMesh().multi_evaluable_elements_begin(dof_maps),
843 _mesh.
getMesh().multi_evaluable_elements_end(dof_maps));
853 std::vector<const DofMap *> dof_maps(
_nl.size());
855 dof_maps[i] = &
_nl[i]->dofMap();
857 std::make_unique<ConstElemRange>(
_mesh.
getMesh().multi_evaluable_elements_begin(dof_maps),
858 _mesh.
getMesh().multi_evaluable_elements_end(dof_maps));
867 TIME_SECTION(
"initialSetup", 2,
"Performing Initial Setup");
872 mooseError(
"Checkpoint recovery and restart and exodus restart are all mutually exclusive.");
875 mooseWarning(
"MOOSE may fail to catch an exception when the \"skip_exception_check\" parameter " 876 "is used. If you receive a terse MPI error during execution, remove this " 877 "parameter and rerun your simulation");
892 _aux->initSolutionState();
905 TIME_SECTION(
"computingMaxDofs", 3,
"Computing Max Dofs Per Element");
909 max_var_n_dofs_per_elem = mvndpe.
max();
914 max_var_n_dofs_per_node = mvndpn.
max();
916 global_max_var_n_dofs_per_elem =
917 std::max(global_max_var_n_dofs_per_elem, max_var_n_dofs_per_elem);
921 TIME_SECTION(
"assignMaxDofs", 5,
"Assigning Maximum Dofs Per Elem");
923 sys.assignMaxVarNDofsPerElem(max_var_n_dofs_per_elem);
926 displaced_problem->solverSys(i).assignMaxVarNDofsPerElem(max_var_n_dofs_per_elem);
928 sys.assignMaxVarNDofsPerNode(max_var_n_dofs_per_node);
930 displaced_problem->solverSys(i).assignMaxVarNDofsPerNode(max_var_n_dofs_per_node);
935 TIME_SECTION(
"resizingVarValues", 5,
"Resizing Variable Values");
939 _phi_zero[tid].resize(global_max_var_n_dofs_per_elem, std::vector<Real>(
getMaxQps(), 0.));
959 props->setRecovering();
961 TIME_SECTION(
"restore", 3,
"Restoring from backup");
988 TIME_SECTION(
"copyingFromExodus", 3,
"Copying Variables From Exodus");
991 sys->copyVars(*reader);
992 _aux->copyVars(*reader);
997 mooseError(
"Need Exodus reader to restart variables but the reader is not available\n" 998 "Use either FileMesh with an Exodus mesh file or FileMeshGenerator with an " 999 "Exodus mesh file and with use_for_exodus_restart equal to true");
1015 mooseError(
"Stateful neighbor material properties do not work with mesh adaptivity");
1031 "Doing extra refinements when restarting is NOT supported for sub-apps of a MultiApp");
1041 TIME_SECTION(
"convergenceInitialSetup", 5,
"Initializing Convergence objects");
1049 std::set<std::string> depend_objects_aux =
_aux->getDependObjects();
1053 std::vector<UserObject *> userobjs;
1058 std::map<int, std::vector<UserObject *>> group_userobjs;
1059 for (
auto obj : userobjs)
1060 group_userobjs[obj->getParam<
int>(
"execution_order_group")].push_back(obj);
1062 for (
auto & [group, objs] : group_userobjs)
1063 for (
auto obj : objs)
1064 obj->initialSetup();
1076 TIME_SECTION(
"initializingFunctions", 5,
"Initializing Functions");
1088 TIME_SECTION(
"initializingRandomObjects", 5,
"Initializing Random Objects");
1100 TIME_SECTION(
"ICinitialSetup", 5,
"Setting Up Initial Conditions");
1114 TIME_SECTION(
"materialInitialSetup", 3,
"Setting Up Materials");
1136 TIME_SECTION(
"computingInitialStatefulProps", 3,
"Computing Initial Material Values");
1152 props->setRestartInPlace();
1153 props->setRecovering();
1164 #ifdef LIBMESH_ENABLE_AMR 1170 mooseError(
"Cannot perform initial adaptivity during restart on sub-apps of a MultiApp!");
1175 #endif // LIBMESH_ENABLE_AMR 1186 unsigned short ic_state_max = 0;
1188 auto findMax = [&ic_state_max](
const auto & obj_list)
1190 for (
auto ic : obj_list.getActiveObjects())
1191 ic_state_max =
std::max(ic_state_max, ic->getState());
1198 if (ic_state_max > 0)
1202 std::vector<std::unique_ptr<NumericVector<Real>>> state0_sys_buffers(
_solver_systems.size());
1203 std::unique_ptr<NumericVector<Real>> state0_aux_buffer;
1209 state0_aux_buffer =
_aux->solutionState(0).clone();
1230 _aux->solutionState(0) = *state0_aux_buffer;
1231 _aux->solutionState(0).close();
1244 sys->initialSetup();
1247 _aux->initialSetup();
1254 sys->setSolution(*(sys->system().current_local_solution.get()));
1284 const auto & tis = sys->getTimeIntegrators();
1287 TIME_SECTION(
"timeIntegratorInitialSetup", 5,
"Initializing Time Integrator");
1288 for (
auto & ti : tis)
1299 TIME_SECTION(
"initialSetupMultiApps", 2,
"Initializing MultiApps",
false);
1305 TIME_SECTION(
"initialSetupTransfers", 2,
"Initializing Transfers");
1311 for (
const auto & transfer : to_multi_app_objects)
1313 transfer->setCurrentDirection(Transfer::DIRECTION::TO_MULTIAPP);
1314 transfer->initialSetup();
1319 for (
const auto & transfer : from_multi_app_objects)
1321 transfer->setCurrentDirection(Transfer::DIRECTION::FROM_MULTIAPP);
1322 transfer->initialSetup();
1327 for (
const auto & transfer : between_multi_app_objects)
1329 transfer->setCurrentDirection(Transfer::DIRECTION::BETWEEN_MULTIAPP);
1330 transfer->initialSetup();
1336 TIME_SECTION(
"BoundaryRestrictedNodeIntegrityCheck", 5);
1341 Threads::parallel_reduce(bnd_nodes, bnict);
1345 for (
const auto & bnode : bnd_nodes)
1347 const auto boundary_id = bnode->_bnd_id;
1348 const Node *
const node = bnode->_node;
1355 const Elem *
const an_elem =
1362 for (
auto & nl :
_nl)
1364 const auto & nodal_bcs = nl->getNodalBCWarehouse();
1365 if (!nodal_bcs.hasBoundaryObjects(boundary_id, 0))
1368 const auto & bnd_objects = nodal_bcs.getBoundaryObjects(boundary_id, 0);
1369 for (
const auto & bnd_object : bnd_objects)
1372 if (!bnd_object->requiresGeometricSearch() &&
1373 bnd_object->checkVariableBoundaryIntegrity())
1375 std::set<MooseVariableFieldBase *> vars_to_omit = {
1380 *bnd_object, bnd_object->checkAllVariables(*node, vars_to_omit), bnd_name);
1388 TIME_SECTION(
"BoundaryRestrictedElemIntegrityCheck", 5);
1393 Threads::parallel_reduce(bnd_elems, beict);
1402 mooseError(
"failed to converge initial MultiApp");
1434 TIME_SECTION(
"computeMaterials", 2,
"Computing Initial Material Properties");
1443 for (
unsigned int tid = 0; tid <
n_threads; tid++)
1461 TIME_SECTION(
"lineSearchInitialSetup", 5,
"Initializing Line Search");
1483 "\" has the same name as a scalar variable in the system.");
1494 std::unique_ptr<libMesh::MeshRefinement> displaced_mesh_refinement(
nullptr);
1496 displaced_mesh_refinement = std::make_unique<libMesh::MeshRefinement>(*_displaced_mesh);
1512 displaced_mesh_refinement->uniformly_coarsen();
1560 _aux->timestepSetup();
1562 sys->timestepSetup();
1575 std::vector<UserObject *> userobjs;
1577 for (
auto obj : userobjs)
1578 obj->timestepSetup();
1605 TIME_SECTION(
"checkNonlocalCoupling", 5,
"Checking Nonlocal Coupling");
1608 for (
auto & nl :
_nl)
1610 const auto & all_kernels = nl->getKernelWarehouse();
1611 const auto & kernels = all_kernels.getObjects(tid);
1612 for (
const auto & kernel : kernels)
1614 std::shared_ptr<NonlocalKernel> nonlocal_kernel =
1616 if (nonlocal_kernel)
1624 nl->getIntegratedBCWarehouse();
1625 const auto & integrated_bcs = all_integrated_bcs.
getObjects(tid);
1626 for (
const auto & integrated_bc : integrated_bcs)
1628 std::shared_ptr<NonlocalIntegratedBC> nonlocal_integrated_bc =
1630 if (nonlocal_integrated_bc)
1643 std::set<const MooseVariableFEBase *> uo_jacobian_moose_vars;
1645 std::vector<ShapeElementUserObject *> objs;
1649 .condition<AttribThread>(tid)
1652 for (
const auto & uo : objs)
1655 const auto & mv_deps = uo->jacobianMooseVariables();
1656 uo_jacobian_moose_vars.insert(mv_deps.begin(), mv_deps.end());
1660 std::vector<ShapeSideUserObject *> objs;
1664 .condition<AttribThread>(tid)
1666 for (
const auto & uo : objs)
1669 const auto & mv_deps = uo->jacobianMooseVariables();
1670 uo_jacobian_moose_vars.insert(mv_deps.begin(), mv_deps.end());
1682 for (
unsigned int i = 0; i < moose_vars.size(); ++i)
1684 VariableName var_name = moose_vars[i]->name();
1686 sys->setVariableGlobalDoFs(var_name);
1704 _assembly[tid][i]->prepareJacobianBlock();
1727 for (
auto & nl :
_nl)
1728 nl->prepareFace(tid,
true);
1729 _aux->prepareFace(tid,
false);
1739 const std::vector<dof_id_type> & dof_indices,
1745 _nl[i]->prepare(tid);
1750 _assembly[tid][current_nl_sys_num]->prepareBlock(ivar, jvar, dof_indices);
1755 _assembly[tid][current_nl_sys_num]->prepareBlockNonlocal(
1777 _assembly[tid][i]->setCurrentSubdomainID(did);
1790 _assembly[tid][i]->setCurrentNeighborSubdomainID(did);
1803 _assembly[tid][i]->setCurrentNeighborSubdomainID(did);
2005 std::vector<dof_id_type> & dof_indices,
2006 const std::set<TagID> & tags,
2029 _displaced_problem->addJacobianBlockTags(jacobian, ivar, jvar, dof_map, dof_indices, tags, tid);
2035 jacobian, ivar, jvar, dof_map, dof_indices, jv.
allDofIndices(), tags, tid);
2045 std::vector<dof_id_type> & dof_indices,
2046 std::vector<dof_id_type> & neighbor_dof_indices,
2047 const std::set<TagID> & tags,
2055 neighbor_dof_indices,
2060 jacobian, ivar, jvar, dof_map, dof_indices, neighbor_dof_indices, tags, tid);
2099 TIME_SECTION(
"ghostGhostedBoundaries", 3,
"Ghosting Ghosted Boundaries");
2111 "This function is deprecated and no longer performs any function. Please do not call it."));
2119 unsigned int n_points = points.size();
2136 _zero[tid].resize(max_qpts, 0);
2146 _assembly[tid][i]->reinitAtPhysical(elem, points);
2147 _nl[i]->prepare(tid);
2158 bool have_points = n_points > 0;
2173 sys->reinitElem(elem, tid);
2174 _aux->reinitElem(elem, tid);
2182 const std::vector<Point> & phys_points_in_elem,
2186 "Are you calling this method with a displaced mesh element?");
2190 _assembly[tid][i]->reinitAtPhysical(elem, phys_points_in_elem);
2203 const unsigned int side,
2208 "reinitElemFace with a BoundaryID argument is deprecated because the boundary id was never " 2209 "used. Please call reinitElemFace without the BoundaryID argument instead");
2222 _aux->reinitElemFace(elem, side, tid);
2231 const std::vector<Point> *
const pts,
2232 const std::vector<Real> *
const weights)
2250 _nl[i]->reinitNode(node, tid);
2252 _aux->reinitNode(node, tid);
2264 _nl[i]->reinitNodeFace(node, bnd_id, tid);
2266 _aux->reinitNodeFace(node, bnd_id, tid);
2275 for (
auto & nl :
_nl)
2276 nl->reinitNodes(nodes, tid);
2277 _aux->reinitNodes(nodes, tid);
2286 for (
auto & nl :
_nl)
2287 nl->reinitNodesNeighbor(nodes, tid);
2288 _aux->reinitNodesNeighbor(nodes, tid);
2294 TIME_SECTION(
"reinitScalars", 3,
"Reinitializing Scalar Variables");
2299 for (
auto & nl :
_nl)
2300 nl->reinitScalars(tid, reinit_for_derivative_reordering);
2301 _aux->reinitScalars(tid, reinit_for_derivative_reordering);
2326 _assembly[tid][i]->reinitElemAndNeighbor(elem, side, neighbor, neighbor_side);
2327 _nl[i]->prepareNeighbor(tid);
2331 _aux->prepareNeighbor(tid);
2333 for (
auto & nl :
_nl)
2335 nl->reinitElemFace(elem, side, tid);
2336 nl->reinitNeighborFace(neighbor, neighbor_side, tid);
2338 _aux->reinitElemFace(elem, side, tid);
2339 _aux->reinitNeighborFace(neighbor, neighbor_side, tid);
2348 const auto & displaced_ref_pts =
_assembly[tid][0]->qRuleNeighbor()->get_points();
2368 auto & neighbor =
_assembly[tid][0]->neighbor();
2369 auto & neighbor_side =
_assembly[tid][0]->neighborSide();
2371 if (lower_d_elem_neighbor &&
2374 auto qps =
_assembly[tid][0]->qPointsFaceNeighbor().stdVector();
2375 std::vector<Point> reference_points;
2377 lower_d_elem_neighbor->
dim(), lower_d_elem_neighbor, qps, reference_points);
2389 unsigned int neighbor_side,
2390 const std::vector<Point> & physical_points,
2394 "Are you calling this method with a displaced mesh element?");
2399 _assembly[tid][i]->reinitNeighborAtPhysical(neighbor, neighbor_side, physical_points);
2402 _nl[i]->prepareNeighbor(tid);
2404 _aux->prepareNeighbor(tid);
2410 for (
auto & nl :
_nl)
2411 nl->reinitNeighborFace(neighbor, neighbor_side, tid);
2412 _aux->reinitNeighborFace(neighbor, neighbor_side, tid);
2417 const std::vector<Point> & physical_points,
2421 "Are you calling this method with a displaced mesh element?");
2426 _assembly[tid][i]->reinitNeighborAtPhysical(neighbor, physical_points);
2429 _nl[i]->prepareNeighbor(tid);
2431 _aux->prepareNeighbor(tid);
2437 for (
auto & nl :
_nl)
2438 nl->reinitNeighbor(neighbor, tid);
2439 _aux->reinitNeighbor(neighbor, tid);
2450 std::set<const Elem *> displaced_elements;
2455 for (
const auto & elem : displaced_elements)
2478 for (
auto & nl :
_nl)
2479 nl->subdomainSetup(subdomain, tid);
2493 const std::string & name,
2496 parallel_object_only();
2513 mooseError(
"Unrecognized function functor type");
2519 const std::string & name,
2522 parallel_object_only();
2534 const std::string class_name =
"DefaultNonlinearConvergence";
2538 params.
set<
bool>(
"added_as_default") =
true;
2546 const std::string class_name =
"DefaultMultiAppFixedPointConvergence";
2550 params.
set<
bool>(
"added_as_default") =
true;
2557 const std::string class_name =
"DefaultSteadyStateConvergence";
2561 params.
set<
bool>(
"added_as_default") =
true;
2581 std::istringstream ss(
name);
2585 if (ss >> real_value && ss.eof())
2588 params.
set<
Real>(
"value") = real_value;
2589 addFunction(
"ConstantFunction", ss.str(), params);
2594 std::string
vars =
"x,y,z,t,NaN,pi,e";
2599 params.
set<std::string>(
"expression") =
name;
2627 mooseError(
"The Convergence object '",
name,
"' does not exist.");
2632 const std::vector<std::shared_ptr<Convergence>> &
2640 const std::string & name,
2643 parallel_object_only();
2658 mooseError(
"No MeshDivision object named ",
name,
" of appropriate type");
2671 mooseDeprecated(
"FEProblemBase::getNonlinearSystem() is deprecated, please use " 2672 "FEProblemBase::getNonlinearSystemBase() \n");
2674 mooseAssert(sys_num <
_nl.size(),
"System number greater than the number of nonlinear systems");
2685 const std::string & name,
2695 std::vector<Distribution *> objs;
2699 .condition<AttribName>(
name)
2702 mooseError(
"Unable to find Distribution with name '" +
name +
"'");
2708 const std::string & name,
2712 for (
auto & sampler : samplers)
2719 std::vector<Sampler *> objs;
2723 .condition<AttribThread>(tid)
2728 "Unable to find Sampler with name '" +
name +
2729 "', if you are attempting to access this object in the constructor of another object then " 2730 "the object being retrieved must occur prior to the caller within the input file.");
2738 const std::set<SubdomainID> *
const active_subdomains)
2740 std::set<SubdomainID> subdomainIDs;
2741 if (active_subdomains->size() == 0)
2744 subdomainIDs.insert(subdomains.begin(), subdomains.end());
2747 subdomainIDs.insert(active_subdomains->begin(), active_subdomains->end());
2753 std::string error_prefix =
"";
2756 curr_sys_ptr =
_aux.get();
2757 other_sys_ptr = sys.get();
2758 error_prefix =
"aux";
2762 mooseError(
"Cannot have an auxiliary variable and a solver variable with the same name: ",
2773 const auto stringifyType = [](
FEType t)
2776 mooseError(
"Mismatching types are specified for ",
2778 "variable with name '",
2781 stringifyType(var.
type()),
2783 stringifyType(
type),
2791 std::set<SubdomainID> varSubdomainIDs;
2792 if (varActiveSubdomains.size() == 0)
2795 varSubdomainIDs.insert(subdomains.begin(), subdomains.end());
2798 varSubdomainIDs.insert(varActiveSubdomains.begin(), varActiveSubdomains.end());
2802 const auto isSubset = std::includes(varSubdomainIDs.begin(),
2803 varSubdomainIDs.end(),
2804 subdomainIDs.begin(),
2805 subdomainIDs.end());
2810 const auto stringifySubdomains = [
this](std::set<SubdomainID> subdomainIDs)
2812 std::stringstream s;
2813 for (
auto const i : subdomainIDs)
2821 if (subdomainName.empty())
2824 s << subdomainName <<
" (" << i <<
")";
2829 const std::string msg =
"Mismatching block-restrictions are specified for " +
2830 error_prefix +
"variable with name '" + var_name +
"': {" +
2831 stringifySubdomains(varSubdomainIDs) +
"} and {" +
2832 stringifySubdomains(subdomainIDs) +
"}";
2847 const std::string & var_name,
2850 parallel_object_only();
2852 const auto order = Utility::string_to_enum<Order>(params.
get<
MooseEnum>(
"order"));
2853 const auto family = Utility::string_to_enum<FEFamily>(params.
get<
MooseEnum>(
"family"));
2854 const auto fe_type =
FEType(order, family);
2856 const auto active_subdomains_vector =
2858 const std::set<SubdomainID> active_subdomains(active_subdomains_vector.begin(),
2859 active_subdomains_vector.end());
2866 SolverSystemName sys_name = params.
get<SolverSystemName>(
"solver_sys");
2868 const auto solver_system_number =
solverSysNum(sys_name);
2869 logAdd(
"Variable", var_name, var_type, params);
2870 _solver_systems[solver_system_number]->addVariable(var_type, var_name, params);
2880 std::pair<bool, unsigned int>
2882 const bool error_if_not_found)
const 2889 "If the variable is in our FEProblem solver system map, then it must be in the " 2890 "solver system we expect");
2891 else if (error_if_not_found)
2893 if (
_aux->hasVariable(var_name) ||
_aux->hasScalarVariable(var_name))
2896 " found. Did you specify an auxiliary variable when you meant to specify a " 2897 "solver variable?");
2901 "'. It does not exist in the solver system(s) or auxiliary system");
2909 const std::string & name,
2911 const unsigned int nl_sys_num,
2912 const std::string & base_name,
2913 bool & reinit_displaced)
2919 reinit_displaced =
true;
2942 const std::string & name,
2945 parallel_object_only();
2948 mooseError(
"You are trying to add a Kernel to a linear variable/system, which is not " 2949 "supported at the moment!");
2958 const std::string & name,
2961 parallel_object_only();
2964 mooseError(
"You are trying to add a HDGKernel to a linear variable/system, which is not " 2965 "supported at the moment!");
2974 const std::string & name,
2977 parallel_object_only();
3007 const std::string & name,
3010 parallel_object_only();
3014 mooseError(
"You are trying to add a ScalarKernel to a linear variable/system, which is not " 3015 "supported at the moment!");
3044 const std::string & name,
3047 parallel_object_only();
3052 "You are trying to add a BoundaryCondition to a linear variable/system, which is not " 3053 "supported at the moment!");
3062 const std::string & name,
3065 parallel_object_only();
3069 auto determine_var_param_name = [&
parameters,
this]()
3078 if (!has_secondary_var && !has_primary_var)
3080 "Either a 'secondary_variable' or 'primary_variable' parameter must be supplied for '",
3083 return has_secondary_var ?
"secondary_variable" :
"primary_variable";
3087 const auto nl_sys_num =
3090 mooseError(
"You are trying to add a Constraint to a linear variable/system, which is not " 3091 "supported at the moment!");
3115 const std::string & var_name,
3118 parallel_object_only();
3120 const auto order = Utility::string_to_enum<Order>(params.
get<
MooseEnum>(
"order"));
3121 const auto family = Utility::string_to_enum<FEFamily>(params.
get<
MooseEnum>(
"family"));
3122 const auto fe_type =
FEType(order, family);
3124 const auto active_subdomains_vector =
3126 const std::set<SubdomainID> active_subdomains(active_subdomains_vector.begin(),
3127 active_subdomains_vector.end());
3135 logAdd(
"AuxVariable", var_name, var_type, params);
3136 _aux->addVariable(var_type, var_name, params);
3147 const std::set<SubdomainID> *
const active_subdomains)
3149 parallel_object_only();
3151 mooseDeprecated(
"Please use the addAuxVariable(var_type, var_name, params) API instead");
3156 std::string var_type;
3158 var_type =
"MooseVariableConstMonomial";
3160 var_type =
"MooseVariableScalar";
3162 var_type =
"VectorMooseVariable";
3164 var_type =
"MooseVariable";
3172 if (active_subdomains)
3176 logAdd(
"AuxVariable", var_name, var_type, params);
3177 _aux->addVariable(var_type, var_name, params);
3187 unsigned int components,
3188 const std::set<SubdomainID> *
const active_subdomains)
3190 parallel_object_only();
3192 mooseDeprecated(
"Please use the addAuxVariable(var_type, var_name, params) API instead");
3202 params.
set<
unsigned int>(
"components") = components;
3204 if (active_subdomains)
3208 logAdd(
"Variable", var_name,
"ArrayMooseVariable", params);
3209 _aux->addVariable(
"ArrayMooseVariable", var_name, params);
3220 const std::set<SubdomainID> *
const active_subdomains)
3222 parallel_object_only();
3224 mooseDeprecated(
"Please use the addAuxVariable(var_type, var_name, params) API instead");
3239 params.
set<std::vector<Real>>(
"scaling") = {1};
3240 if (active_subdomains)
3244 logAdd(
"ScalarVariable", var_name,
"MooseVariableScalar", params);
3245 _aux->addVariable(
"MooseVariableScalar", var_name, params);
3252 const std::string & name,
3255 parallel_object_only();
3262 if (!
parameters.
get<std::vector<BoundaryName>>(
"boundary").empty())
3290 const std::string & name,
3293 parallel_object_only();
3322 const std::string & name,
3325 parallel_object_only();
3329 mooseError(
"You are trying to add a DiracKernel to a linear variable/system, which is not " 3330 "supported at the moment!");
3362 const std::string & name,
3365 parallel_object_only();
3369 mooseError(
"You are trying to add a DGKernel to a linear variable/system, which is not " 3370 "supported at the moment!");
3402 const std::string & name,
3416 const std::string & name,
3424 const std::string & name,
3429 addObject<FVInterfaceKernel>(
3435 const std::string & name,
3443 const std::string & name,
3453 const std::string & name,
3456 parallel_object_only();
3460 mooseError(
"You are trying to add a InterfaceKernel to a linear variable/system, which is not " 3461 "supported at the moment!");
3493 const std::string & name,
3494 const VariableName & var_name)
3498 std::string restart_method =
"";
3501 "a checkpoint restart, by IC object '" + ic_name +
"' for variable '" +
name +
"'";
3507 restarted_vars.insert(restarted_vars.end(), nodal_vars.begin(), nodal_vars.end());
3508 restarted_vars.insert(restarted_vars.end(), global_vars.begin(), global_vars.end());
3510 if (std::find(restarted_vars.begin(), restarted_vars.end(), var_name) != restarted_vars.end())
3511 restart_method =
"an Exodus restart, by IC object '" + ic_name +
"' for variable '" +
name +
3512 "' that is also being restarted";
3514 if (!restart_method.empty())
3516 "Initial conditions have been specified during ",
3518 ".\nThis is only allowed if you specify 'allow_initial_conditions_with_restart' to " 3519 "the [Problem], as initial conditions can override restarted fields");
3525 const std::string & name,
3528 parallel_object_only();
3532 const std::string & var_name =
parameters.
get<VariableName>(
"variable");
3547 std::shared_ptr<InitialConditionBase> ic;
3548 if (dynamic_cast<MooseVariable *>(&var))
3550 else if (dynamic_cast<VectorMooseVariable *>(&var))
3552 else if (dynamic_cast<ArrayMooseVariable *>(&var))
3554 else if (dynamic_cast<MooseVariableFVReal *>(&var))
3556 else if (dynamic_cast<MooseLinearVariableFVReal *>(&var))
3559 mooseError(
"Your FE variable in initial condition ",
3561 " must be either of scalar or vector type");
3572 std::shared_ptr<ScalarInitialCondition> ic =
3580 "Variable '", var_name,
"' requested in initial condition '",
name,
"' does not exist.");
3585 const std::string & name,
3588 parallel_object_only();
3592 const std::string & var_name =
parameters.
get<VariableName>(
"variable");
3607 std::shared_ptr<FVInitialConditionBase> ic;
3612 "Your variable for an FVInitialCondition needs to be an a finite volume variable!");
3619 "' requested in finite volume initial condition '",
3621 "' does not exist.");
3627 TIME_SECTION(
"projectSolution", 2,
"Projecting Initial Solutions")
3633 Threads::parallel_reduce(elem_range, cic);
3641 Threads::parallel_reduce(elem_info_range, cfvic);
3645 for (
auto & nl :
_nl)
3646 nl->solution().close();
3647 _aux->solution().close();
3652 Threads::parallel_reduce(bnd_nodes, cbic);
3654 for (
auto & nl :
_nl)
3655 nl->solution().close();
3656 _aux->solution().close();
3664 for (
const auto & ic : ics)
3672 const unsigned int n_scalar_dofs = var.
dofIndices().size();
3673 for (
unsigned int i = 0; i < n_scalar_dofs; i++)
3675 const auto global_index = var.
dofIndices()[i];
3684 sys->solution().close();
3685 sys->solution().localize(*sys->system().current_local_solution, sys->dofMap().get_send_list());
3688 _aux->solution().close();
3689 _aux->solution().localize(*
_aux->sys().current_local_solution,
_aux->dofMap().get_send_list());
3696 const std::optional<std::set<VariableName>> & target_vars)
3701 Threads::parallel_reduce(elem_range, cic);
3706 Threads::parallel_reduce(elem_range, cic);
3710 for (
auto & nl :
_nl)
3711 nl->solution().close();
3712 _aux->solution().close();
3717 Threads::parallel_reduce(bnd_nodes, cbic);
3722 Threads::parallel_reduce(bnd_nodes, cbic);
3725 for (
auto & nl :
_nl)
3726 nl->solution().close();
3727 _aux->solution().close();
3735 for (
const auto & ic : ics)
3739 if (target_vars && !target_vars->count(var.
name()))
3747 const unsigned int n_scalar_dofs = var.
dofIndices().size();
3748 for (
unsigned int i = 0; i < n_scalar_dofs; i++)
3750 const auto global_index = var.
dofIndices()[i];
3757 for (
auto & nl :
_nl)
3759 nl->solution().close();
3760 nl->solution().localize(*nl->system().current_local_solution, nl->dofMap().get_send_list());
3763 _aux->solution().close();
3764 _aux->solution().localize(*
_aux->sys().current_local_solution,
_aux->dofMap().get_send_list());
3769 Number (*func)(
const Point &,
3771 const std::string &,
3772 const std::string &),
3775 const std::string &,
3776 const std::string &),
3778 const VariableName & target_var)
3780 mooseAssert(!Threads::in_threads,
3781 "We're performing a projection based on data from just the thread 0 variable, so any " 3782 "modifications to the variable solution must have been thread joined already");
3785 const auto var_num = var.number();
3796 DofMap & dof_map = sys.dofMap();
3797 std::set<dof_id_type> dof_indices;
3798 std::vector<dof_id_type> elem_dof_indices;
3800 for (
const auto & elem : elem_range)
3802 dof_map.
dof_indices(elem, elem_dof_indices, var_num);
3803 dof_indices.insert(elem_dof_indices.begin(), elem_dof_indices.end());
3805 std::vector<dof_id_type> dof_indices_v(dof_indices.begin(), dof_indices.end());
3808 std::vector<Real> dof_vals;
3809 temp_vec->get(dof_indices_v, dof_vals);
3810 mooseAssert(sys.solution().closed(),
3811 "The solution should be closed before mapping our projection");
3812 sys.solution().insert(dof_vals, dof_indices_v);
3813 sys.solution().close();
3817 std::shared_ptr<MaterialBase>
3826 name +=
"_neighbor";
3839 "), but its compute flag is set to true. This indicates that MOOSE is " 3840 "computing this property which may not be desired and produce un-expected " 3861 mooseError(
"FEProblemBase::getMaterialData(): Invalid MaterialDataType ",
type);
3869 "ignore_zeros_in_jacobian",
3870 "We likely cannot preserve the sparsity pattern if ignoring zeros in the Jacobian, which " 3871 "leads to removing those entries from the Jacobian sparsity pattern");
3884 const std::string & name,
3887 parallel_object_only();
3889 auto add_functor_materials = [&](
const auto &
parameters,
const auto &
name)
3894 std::shared_ptr<MaterialBase> material =
3908 add_functor_materials(disp_params,
name +
"_displaced");
3914 const std::string & name,
3922 const std::string & name,
3930 const std::string & mat_name,
3931 const std::string & name,
3934 parallel_object_only();
3959 std::shared_ptr<MaterialBase> material =
3962 bool discrete = !material->getParam<
bool>(
"compute");
3966 if (material->boundaryRestricted() ||
dynamic_cast<FunctorMaterial *
>(material.get()))
3972 for (
auto && warehouse : warehouses)
3973 warehouse->addObject(material, tid);
3985 std::string object_name;
3994 object_name =
name +
"_face";
3995 std::shared_ptr<MaterialBase> face_material =
4001 current_parameters.set<
bool>(
"_neighbor") =
true;
4002 object_name =
name +
"_neighbor";
4003 std::shared_ptr<MaterialBase> neighbor_material =
4012 for (
auto && warehouse : warehouses)
4013 warehouse->addObjects(material, neighbor_material, face_material, tid);
4018 const auto param_names =
4023 for (
const auto & p_name : param_names)
4026 p_name.parameter());
4028 p_name.parameter());
4030 p_name.parameter());
4032 primary_name, face_name,
false);
4034 primary_name, neighbor_name,
false);
4045 std::set<MooseVariableFEBase *> needed_moose_vars;
4046 std::unordered_set<unsigned int> needed_mat_props;
4055 for (
const auto id : ids)
4062 needed_moose_vars.insert(current_active_elemental_moose_variables.begin(),
4063 current_active_elemental_moose_variables.end());
4065 needed_mat_props.insert(consumer_needed_mat_props.begin(), consumer_needed_mat_props.end());
4076 auto && elem =
_assembly[tid][0]->elem();
4077 unsigned int n_points =
_assembly[tid][0]->qRule()->n_points();
4080 material_data.
resize(n_points);
4084 material_data.swap(*elem);
4097 const bool swap_stateful,
4098 const std::deque<MaterialBase *> *
const reinit_mats)
4102 auto && elem =
_assembly[tid][0]->elem();
4103 unsigned int side =
_assembly[tid][0]->side();
4104 unsigned int n_points =
_assembly[tid][0]->qRuleFace()->n_points();
4107 bnd_material_data.
resize(n_points);
4109 if (swap_stateful && !bnd_material_data.isSwapped())
4110 bnd_material_data.swap(*elem, side);
4113 bnd_material_data.reset(
4117 bnd_material_data.reinit(*reinit_mats);
4119 bnd_material_data.reinit(
4127 const bool swap_stateful,
4128 const std::deque<MaterialBase *> *
const reinit_mats)
4138 mooseAssert(neighbor,
"neighbor should be non-null");
4140 "The provided blk_id " << blk_id <<
" and neighbor subdomain ID " 4143 unsigned int n_points =
_assembly[tid][0]->qRuleNeighbor()->n_points();
4146 neighbor_material_data.
resize(n_points);
4150 neighbor_material_data.swap(*neighbor, neighbor_side);
4153 neighbor_material_data.reset(
4157 neighbor_material_data.reinit(*reinit_mats);
4159 neighbor_material_data.reinit(
4167 const bool swap_stateful,
4168 const std::deque<MaterialBase *> *
const reinit_mats)
4172 auto && elem =
_assembly[tid][0]->elem();
4173 unsigned int side =
_assembly[tid][0]->side();
4174 unsigned int n_points =
_assembly[tid][0]->qRuleFace()->n_points();
4177 bnd_material_data.
resize(n_points);
4179 if (swap_stateful && !bnd_material_data.isSwapped())
4180 bnd_material_data.swap(*elem, side);
4186 bnd_material_data.reinit(*reinit_mats);
4200 unsigned int side =
_assembly[tid][0]->side();
4201 unsigned int n_points =
_assembly[tid][0]->qRuleFace()->n_points();
4204 bnd_material_data.
resize(n_points);
4206 if (swap_stateful && !bnd_material_data.isSwapped())
4207 bnd_material_data.swap(*elem, side);
4217 auto && elem =
_assembly[tid][0]->elem();
4224 auto && elem =
_assembly[tid][0]->elem();
4225 unsigned int side =
_assembly[tid][0]->side();
4234 unsigned int neighbor_side =
4248 neighbor_side =
_assembly[tid][0]->side();
4249 mooseAssert(neighbor,
"We should have an appropriate value for elem coming from Assembly");
4260 const std::string & name,
4261 const std::string & type,
4265 _console <<
"[DBG] Adding " << system <<
" '" <<
name <<
"' of type " <<
type << std::endl;
4272 const std::string & object_name,
4273 const std::string & var_param_name)
4279 unsigned int sys_num = 0;
4288 const auto var_sys_num = sys_num;
4291 mooseError(
"We dont support setting 'variable' to a variable that is not set to the same " 4292 "system as the 'solver_sys' parameter");
4299 if (sys_num ==
_aux->number())
4315 if (sys_num ==
_aux->number())
4324 const std::string & name,
4331 " already exists. You may not add a Postprocessor by the same name.");
4338 const std::string & name,
4345 " already exists. You may not add a VectorPostprocessor by the same name.");
4352 const std::string & name,
4359 " already exists. You may not add a Reporter by the same name.");
4364 std::vector<std::shared_ptr<UserObject>>
4366 const std::string & name,
4369 parallel_object_only();
4371 std::vector<std::shared_ptr<UserObject>> uos;
4379 std::shared_ptr<UserObject> user_object =
4382 uos.push_back(user_object);
4385 user_object->setPrimaryThreadCopy(uos[0].
get());
4414 if (euo || nuo || duo)
4416 if (suo || duo || isuo || iuo)
4418 if (iuo || duo || isuo)
4423 if ((guo && !tguo) || muo)
4432 const decltype(uos)::size_type uo_index = uos.front()->needThreadedCopy() ? tid : 0;
4447 std::vector<UserObject *> objs;
4451 .condition<AttribThread>(tid)
4455 mooseError(
"Unable to find user object with name '" +
name +
"'");
4456 mooseAssert(objs.size() == 1,
"Should only find one UO");
4463 std::vector<Positions *> objs;
4467 .condition<AttribName>(
name)
4470 mooseError(
"Unable to find Positions object with name '" +
name +
"'");
4471 mooseAssert(objs.size() == 1,
"Should only find one Positions");
4478 std::vector<UserObject *> objs;
4482 .condition<AttribThread>(0)
4485 return !objs.empty();
4496 std::size_t t_index)
const 4505 std::size_t t_index)
4514 mooseDeprecated(
"FEProblemBase::hasPostprocssor is being removed; use " 4515 "hasPostprocessorValueByName instead.");
4521 const std::string & vector_name,
4522 std::size_t t_index)
const 4530 const std::string & vector_name,
4532 std::size_t t_index)
4542 return getUserObject<VectorPostprocessor>(object_name, tid);
4550 const auto & objects = it.second.getActiveObjects();
4551 for (
const auto & obj : objects)
4552 obj->parentOutputPositionChanged();
4569 TIME_SECTION(
"computeIndicators", 1,
"Computing Indicators");
4573 const auto old_do_derivatives = ADReal::do_derivatives;
4574 ADReal::do_derivatives =
false;
4576 std::vector<std::string>
fields;
4580 for (
const auto & indicator : indicators)
4581 fields.push_back(indicator->name());
4585 for (
const auto & internal_indicator : internal_indicators)
4586 fields.push_back(internal_indicator->name());
4593 _aux->solution().close();
4598 _aux->solution().close();
4601 ADReal::do_derivatives = old_do_derivatives;
4610 TIME_SECTION(
"computeMarkers", 1,
"Computing Markers");
4612 std::vector<std::string>
fields;
4616 for (
const auto & marker : markers)
4617 fields.push_back(marker->name());
4626 for (
const auto & marker : markers)
4627 marker->markerSetup();
4633 _aux->solution().close();
4670 _aux->customSetup(exec_type);
4671 for (
auto & nl :
_nl)
4672 nl->customSetup(exec_type);
4684 std::vector<UserObject *> userobjs;
4686 for (
auto obj : userobjs)
4687 obj->customSetup(exec_type);
4739 std::unique_ptr<NumericVector<Number>> x =
_aux->currentSolution()->clone();
4747 const Real check_tol = 1e-8;
4749 const Real xnorm = x->l2_norm();
4750 *x -= *
_aux->currentSolution();
4751 if (x->l2_norm() > check_tol * xnorm)
4753 const auto & sys =
_aux->system();
4754 const unsigned int n_vars = sys.n_vars();
4755 std::multimap<Real, std::string, std::greater<Real>> ordered_map;
4759 ordered_map.emplace(vnorm, sys.variable_name(i));
4762 std::ostringstream oss;
4763 for (
const auto & [error_norm, var_name] : ordered_map)
4764 oss <<
" {" << var_name <<
", " << error_norm <<
"},\n";
4766 mooseError(
"Aux kernels, user objects appear to have states for aux variables on ",
4768 ".\nVariable error norms in descending order:\n",
4773 if (pp_values.
size() != new_pp_values.
size())
4774 mooseError(
"Second execution for uo/aux state check should not change the number of " 4775 "real reporter values");
4778 pp_values -= new_pp_values;
4779 if (pp_values.
l2_norm() > check_tol * ppnorm)
4782 std::multimap<Real, std::string, std::greater<Real>> ordered_map;
4784 ordered_map.emplace(
std::abs(pp_values(i)), pp_names[i]);
4786 std::ostringstream oss;
4787 for (
const auto & [error_norm, pp_name] : ordered_map)
4788 oss <<
" {" << pp_name <<
", " << error_norm <<
"},\n";
4790 mooseError(
"Aux kernels, user objects appear to have states for real reporter values on ",
4792 ".\nErrors of real reporter values in descending order:\n",
4802 std::vector<UserObject *> objs;
4803 query.queryInto(objs);
4808 for (
auto obj : objs)
4809 if (obj->primaryThreadCopy())
4810 obj->primaryThreadCopy()->threadJoin(*obj);
4816 for (
auto obj : objs)
4818 if (isgen && dynamic_cast<ThreadedGeneralUserObject *>(obj))
4824 _console <<
"[DBG] Initializing, executing & finalizing general UO '" << obj->name()
4849 auto reporter =
dynamic_cast<Reporter *
>(obj);
4858 const std::string & name)
4865 .condition<AttribExecOns>(
type)
4886 TIME_SECTION(
"computeUserObjects", 1,
"Computing User Objects");
4897 std::vector<UserObject *> uos;
4899 std::set<int> execution_groups;
4900 for (
const auto & uo : uos)
4901 execution_groups.insert(uo->getParam<
int>(
"execution_order_group"));
4904 for (
const auto execution_group : execution_groups)
4908 std::vector<GeneralUserObject *> genobjs;
4911 std::vector<UserObject *> userobjs;
4917 .queryInto(userobjs);
4919 std::vector<UserObject *> tgobjs;
4924 std::vector<UserObject *> nodal;
4927 std::vector<MortarUserObject *> mortar;
4930 if (userobjs.empty() && genobjs.empty() && tgobjs.empty() && nodal.empty() && mortar.empty())
4939 for (
auto obj : userobjs)
4940 obj->residualSetup();
4941 for (
auto obj : nodal)
4942 obj->residualSetup();
4943 for (
auto obj : mortar)
4944 obj->residualSetup();
4945 for (
auto obj : tgobjs)
4946 obj->residualSetup();
4947 for (
auto obj : genobjs)
4948 obj->residualSetup();
4952 for (
auto obj : userobjs)
4953 obj->jacobianSetup();
4954 for (
auto obj : nodal)
4955 obj->jacobianSetup();
4956 for (
auto obj : mortar)
4957 obj->jacobianSetup();
4958 for (
auto obj : tgobjs)
4959 obj->jacobianSetup();
4960 for (
auto obj : genobjs)
4961 obj->jacobianSetup();
4964 for (
auto obj : userobjs)
4968 if (!userobjs.empty())
4987 for (
const auto & uo : userobjs)
4988 if (
auto euo = dynamic_cast<const ElementUserObject *>(uo);
4989 euo && euo->hasWritableCoupledVariables())
4991 _aux->solution().close();
4992 _aux->system().update();
5000 for (
auto obj : nodal)
5010 for (
const auto & uo : nodal)
5011 if (
auto nuo = dynamic_cast<const NodalUserObject *>(uo);
5012 nuo && nuo->hasWritableCoupledVariables())
5014 _aux->solution().close();
5015 _aux->system().update();
5021 for (
auto obj : mortar)
5023 if (!mortar.empty())
5025 auto create_and_run_mortar_functors = [
this,
type, &mortar](
const bool displaced)
5029 for (
const auto & mortar_interface : mortar_interfaces)
5031 const auto primary_secondary_boundary_pair = mortar_interface.first;
5032 auto mortar_uos_to_execute =
5034 primary_secondary_boundary_pair.second,
5037 const auto & mortar_generation_object = mortar_interface.second;
5039 auto *
const subproblem = displaced
5041 : static_cast<SubProblem *>(
this);
5043 mortar_generation_object,
5047 subproblem->assembly(0, 0));
5053 create_and_run_mortar_functors(
false);
5055 create_and_run_mortar_functors(
true);
5057 for (
auto obj : mortar)
5062 for (
auto obj : tgobjs)
5064 std::vector<GeneralUserObject *> tguos_zero;
5068 .queryInto(tguos_zero);
5069 for (
auto obj : tguos_zero)
5071 std::vector<GeneralUserObject *> tguos;
5072 auto q =
query.clone()
5098 TIME_SECTION(
"executeControls", 1,
"Executing Controls");
5104 for (
const auto & it : controls_wh.getActiveObjects())
5109 std::vector<std::string> & dependent_controls = it->getDependencies();
5110 for (
const auto & depend_name : dependent_controls)
5112 if (controls_wh.hasActiveObject(depend_name))
5114 auto dep_control = controls_wh.getActiveObject(depend_name);
5115 resolver.
addEdge(dep_control, it);
5120 "\" was not created, did you make a " 5121 "spelling mistake or forget to include it " 5122 "in your input file?");
5128 if (!ordered_controls.empty())
5132 for (
const auto & control : ordered_controls)
5145 std::vector<Sampler *> objects;
5149 .condition<AttribThread>(tid)
5151 .queryInto(objects);
5153 if (!objects.empty())
5155 TIME_SECTION(
"executeSamplers", 1,
"Executing Samplers");
5156 FEProblemBase::objectSetupHelper<Sampler>(objects, exec_type);
5157 FEProblemBase::objectExecuteHelper<Sampler>(objects);
5165 TIME_SECTION(
"updateActiveObjects", 5,
"Updating Active Objects");
5169 for (
auto & nl :
_nl)
5170 nl->updateActive(tid);
5171 _aux->updateActive(tid);
5198 TIME_SECTION(
"reinitBecauseOfGhostingOrNewGeomObjects",
5200 "Reinitializing Because of Geometric Search Objects");
5224 const std::string & name,
5227 parallel_object_only();
5229 const auto nl_sys_num =
5235 mooseError(
"You are trying to add a DGKernel to a linear variable/system, which is not " 5236 "supported at the moment!");
5249 for (
auto & nl :
_nl)
5255 const std::string & name,
5258 parallel_object_only();
5284 std::shared_ptr<Indicator> indicator =
5287 std::shared_ptr<InternalSideIndicatorBase> isi =
5298 const std::string & name,
5301 parallel_object_only();
5335 const std::string & name,
5338 parallel_object_only();
5366 multi_app->setupPositions();
5371 std::shared_ptr<TransientMultiApp> trans_multi_app =
5373 if (trans_multi_app)
5389 std::shared_ptr<MultiApp>
5400 std::string string_direction;
5402 string_direction =
" To ";
5403 else if (from_multiapp)
5404 string_direction =
" From ";
5406 string_direction =
" Between ";
5414 TIME_SECTION(
"execMultiAppTransfers", 1,
"Executing Transfers");
5421 <<
"MultiApps" << COLOR_DEFAULT <<
":" << std::endl;
5424 {
"Name",
"Type",
"From",
"To"});
5427 for (
const auto & transfer : transfers)
5431 table.addRow(multiapp_transfer->name(),
5432 multiapp_transfer->type(),
5433 multiapp_transfer->getFromName(),
5434 multiapp_transfer->getToName());
5441 for (
const auto & transfer : transfers)
5444 transfer->execute();
5451 << COLOR_DEFAULT << std::endl;
5458 << COLOR_DEFAULT << std::endl;
5462 std::vector<std::shared_ptr<Transfer>>
5473 std::vector<std::shared_ptr<Transfer>>
5499 const std::vector<MooseSharedPointer<MultiApp>> & multi_apps =
5503 for (
const auto & multi_app : multi_apps)
5504 multi_app->preTransfer(
_dt,
_time);
5513 if (multi_apps.size())
5515 TIME_SECTION(
"execMultiApps", 1,
"Executing MultiApps",
false);
5519 << COLOR_DEFAULT << std::endl;
5521 bool success =
true;
5523 for (
const auto & multi_app : multi_apps)
5525 success = multi_app->solveStep(
_dt,
_time, auto_advance);
5540 << COLOR_DEFAULT << std::endl;
5555 for (
const auto & multi_app : multi_apps)
5556 multi_app->finalize();
5564 for (
const auto & multi_app : multi_apps)
5565 multi_app->postExecute();
5573 if (multi_apps.size())
5574 for (
const auto & multi_app : multi_apps)
5575 multi_app->incrementTStep(
_time);
5583 if (multi_apps.size())
5586 _console << COLOR_CYAN <<
"\nAdvancing MultiApps on " <<
type.name() << COLOR_DEFAULT
5589 for (
const auto & multi_app : multi_apps)
5590 multi_app->finishStep(recurse_through_multiapp_levels);
5595 _console << COLOR_CYAN <<
"Finished Advancing MultiApps on " <<
type.name() <<
"\n" 5596 << COLOR_DEFAULT << std::endl;
5605 if (multi_apps.size())
5607 TIME_SECTION(
"backupMultiApps", 5,
"Backing Up MultiApp");
5610 _console << COLOR_CYAN <<
"\nBacking Up MultiApps on " <<
type.name() << COLOR_DEFAULT
5613 for (
const auto & multi_app : multi_apps)
5614 multi_app->backup();
5619 _console << COLOR_CYAN <<
"Finished Backing Up MultiApps on " <<
type.name() <<
"\n" 5620 << COLOR_DEFAULT << std::endl;
5629 if (multi_apps.size())
5634 _console << COLOR_CYAN <<
"\nRestoring Multiapps on " <<
type.name()
5635 <<
" because of solve failure!" << COLOR_DEFAULT << std::endl;
5637 _console << COLOR_CYAN <<
"\nRestoring MultiApps on " <<
type.name() << COLOR_DEFAULT
5641 for (
const auto & multi_app : multi_apps)
5642 multi_app->restore(force);
5647 _console << COLOR_CYAN <<
"Finished Restoring MultiApps on " <<
type.name() <<
"\n" 5648 << COLOR_DEFAULT << std::endl;
5659 for (
const auto & multi_app : multi_apps)
5660 smallest_dt =
std::min(smallest_dt, multi_app->computeDT());
5670 TIME_SECTION(
"execTransfers", 3,
"Executing Transfers");
5674 for (
const auto & transfer : transfers)
5675 transfer->execute();
5681 const std::string & name,
5684 parallel_object_only();
5715 std::shared_ptr<MultiApp> multiapp;
5728 exec_enum = multiapp->getParam<
ExecFlagEnum>(
"execute_on");
5736 std::shared_ptr<MultiAppTransfer> multi_app_transfer =
5738 if (multi_app_transfer)
5755 if (sys->hasVariable(var_name))
5757 if (
_aux->hasVariable(var_name))
5767 if (sys->hasVariable(var_name))
5775 const std::string & var_name,
5787 if (sys->hasVariable(var_name))
5788 return sys->getFieldVariable<
Real>(tid, var_name);
5789 if (
_aux->hasVariable(var_name))
5790 return _aux->getFieldVariable<
Real>(tid, var_name);
5799 if (sys->hasVariable(var_name))
5800 return sys->getActualFieldVariable<
Real>(tid, var_name);
5801 if (
_aux->hasVariable(var_name))
5802 return _aux->getActualFieldVariable<
Real>(tid, var_name);
5811 if (sys->hasVariable(var_name))
5813 if (
_aux->hasVariable(var_name))
5823 if (sys->hasVariable(var_name))
5825 if (
_aux->hasVariable(var_name))
5835 if (sys->hasScalarVariable(var_name))
5837 if (
_aux->hasScalarVariable(var_name))
5847 if (sys->hasScalarVariable(var_name))
5848 return sys->getScalarVariable(tid, var_name);
5849 if (
_aux->hasScalarVariable(var_name))
5850 return _aux->getScalarVariable(tid, var_name);
5861 else if (
_aux->hasVariable(var_name) ||
_aux->hasScalarVariable(var_name))
5862 return _aux->system();
5864 mooseError(
"Unable to find a system containing the variable " + var_name);
5966 mat->setActiveProperties(mat_prop_ids);
5968 mat->setActiveProperties(mat_prop_ids);
5970 mat->setActiveProperties(mat_prop_ids);
5990 #ifdef LIBMESH_ENABLE_AMR 6000 const std::string & redistributer_name,
6001 const bool use_displaced_mesh)
6005 redistribute_params.
set<std::string>(
"for_whom") = this->
name();
6009 redistribute_params.
set<
bool>(
"use_displaced_mesh") = use_displaced_mesh;
6012 std::shared_ptr<RedistributeProperties> redistributer =
6014 "RedistributeProperties", redistributer_name, redistribute_params);
6028 add_redistributer(
_mesh,
"mesh_property_redistributer",
false);
6030 add_redistributer(
_displaced_problem->mesh(),
"displaced_mesh_property_redistributer",
true);
6032 #endif // LIBMESH_ENABLE_AMR 6052 mooseError(
"Max quadrature points per element assumptions made in some code (e.g. Coupleable ",
6053 "and MaterialPropertyInterface classes) have been violated.\n",
6054 "Complain to Moose developers to have constMaxQpsPerElem increased from ",
6062 _zero[tid].resize(max_qpts, 0);
6105 const bool allow_negative_qweights)
6114 if (order < _aux->getMinQuadratureOrder())
6115 order =
_aux->getMinQuadratureOrder();
6119 volume_order = order;
6127 type, order, volume_order, face_order, block, allow_negative_qweights);
6131 type, order, volume_order, face_order, block, allow_negative_qweights);
6142 mooseError(
"Someone told us (the FEProblemBase) to trust the user coupling matrix, but we " 6143 "haven't been provided a coupling matrix!");
6164 _cm[i] = std::move(cm);
6171 mooseError(
"Someone told us (the FEProblemBase) to trust the user coupling matrix, but we " 6172 "haven't been provided a coupling matrix!");
6180 TIME_SECTION(
"setNonlocalCouplingMatrix", 5,
"Setting Nonlocal Coupling Matrix");
6183 mooseError(
"Nonlocal kernels are weirdly stored on the FEProblem so we don't currently support " 6184 "multiple nonlinear systems with nonlocal kernels.");
6188 auto & nl =
_nl[nl_sys_num];
6190 unsigned int n_vars = nl->nVariables();
6191 nonlocal_cm.resize(
n_vars);
6192 const auto &
vars = nl->getVariables(0);
6195 for (
const auto & ivar :
vars)
6197 for (
const auto & kernel : nonlocal_kernel)
6199 for (
unsigned int i = ivar->number(); i < ivar->number() + ivar->count(); ++i)
6200 if (i == kernel->variable().number())
6201 for (
const auto & jvar :
vars)
6206 unsigned int j = jvar->number();
6207 nonlocal_cm(i, j) = 1;
6211 for (
const auto & integrated_bc : nonlocal_integrated_bc)
6213 for (
unsigned int i = ivar->number(); i < ivar->number() + ivar->count(); ++i)
6214 if (i == integrated_bc->variable().number())
6215 for (
const auto & jvar :
vars)
6220 unsigned int j = jvar->number();
6221 nonlocal_cm(i, j) = 1;
6231 const unsigned int jvar,
6232 const unsigned int nl_sys)
const 6234 return (*
_cm[nl_sys])(ivar, jvar);
6237 std::vector<std::pair<MooseVariableFEBase *, MooseVariableFEBase *>> &
6240 return _assembly[tid][nl_sys]->couplingEntries();
6243 std::vector<std::pair<MooseVariableFEBase *, MooseVariableFEBase *>> &
6246 return _assembly[tid][nl_sys]->nonlocalCouplingEntries();
6255 TIME_SECTION(
"init", 2,
"Initializing");
6271 unsigned int n_vars = nl->nVariables();
6273 TIME_SECTION(
"fillCouplingMatrix", 3,
"Filling Coupling Matrix");
6278 cm = std::make_unique<CouplingMatrix>(
n_vars);
6279 for (
unsigned int i = 0; i <
n_vars; i++)
6285 cm = std::make_unique<CouplingMatrix>(
n_vars);
6286 for (
unsigned int i = 0; i <
n_vars; i++)
6287 for (
unsigned int j = 0; j <
n_vars; j++)
6297 nl->dofMap()._dof_coupling = cm.get();
6303 nl->dofMap()._dof_coupling =
nullptr;
6305 nl->dofMap().attach_extra_sparsity_function(&
extraSparsity, nl.get());
6306 nl->dofMap().attach_extra_send_list_function(&
extraSendList, nl.get());
6310 mooseError(
"No variables specified in nonlinear system '", nl->name(),
"'.");
6332 for (
auto & nl :
_nl)
6334 nl->turnOffJacobian();
6352 TIME_SECTION(
"EquationSystems::Init", 2,
"Initializing Equation Systems");
6374 "Coupling matrix not set for system " 6376 <<
". This should only happen if a preconditioner was not setup for this system");
6389 std::istringstream ss(nl_sys_name);
6390 unsigned int nl_sys_num;
6391 if (!(ss >> nl_sys_num) || !ss.eof())
6400 std::istringstream ss(linear_sys_name);
6401 unsigned int linear_sys_num;
6402 if (!(ss >> linear_sys_num) || !ss.eof())
6405 return linear_sys_num;
6411 std::istringstream ss(solver_sys_name);
6412 unsigned int solver_sys_num;
6413 if (!(ss >> solver_sys_num) || !ss.eof())
6417 mooseError(
"The solver system number was requested for system '" + solver_sys_name,
6418 "' but this system does not exist in the Problem. Systems can be added to the " 6419 "problem using the 'nl_sys_names'/'linear_sys_names' parameter.\nSystems in the " 6422 solver_sys_num = search->second;
6425 return solver_sys_num;
6432 if (solver_sys->hasVariable(variable_name))
6433 return solver_sys->number();
6434 mooseAssert(
_aux,
"Should have an auxiliary system");
6435 if (
_aux->hasVariable(variable_name))
6436 return _aux->number();
6440 "' was not found in any solver (nonlinear/linear) or auxiliary system");
6446 TIME_SECTION(
"solve", 1,
"Solving",
false);
6460 #if PETSC_RELEASE_LESS_THAN(3, 12, 0) 6499 #if !PETSC_RELEASE_LESS_THAN(3, 12, 0) 6501 LibmeshPetscCall(PetscOptionsPop());
6518 TIME_SECTION(
"checkExceptionAndStopSolve", 5);
6539 <<
"To recover, the solution will fail and then be re-attempted with a reduced time " 6554 _aux->solution().close();
6568 mooseError(
"The following parallel-communicated exception was detected during " +
6571 "\nBecause this did not occur during residual evaluation, there" 6572 " is no way to handle this, so the solution is aborting.\n");
6580 ADReal::do_derivatives =
true;
6605 TIME_SECTION(
"solve", 1,
"Solving",
false);
6615 #if PETSC_RELEASE_LESS_THAN(3, 12, 0) 6617 options, solver_params));
6635 #if !PETSC_RELEASE_LESS_THAN(3, 12, 0) 6637 LibmeshPetscCall(PetscOptionsPop());
6653 return _nl[nl_sys_num]->nNonlinearIterations();
6659 return _nl[nl_sys_num]->nLinearIterations();
6665 return _nl[nl_sys_num]->finalNonlinearResidual();
6671 return _nl[nl_sys_num]->computingPreSMOResidual();
6677 TIME_SECTION(
"copySolutionsBackwards", 3,
"Copying Solutions Backward");
6680 sys->copySolutionsBackwards();
6681 _aux->copySolutionsBackwards();
6687 TIME_SECTION(
"advanceState", 5,
"Advancing State");
6690 sys->copyOldSolutions();
6691 _aux->copyOldSolutions();
6717 TIME_SECTION(
"restoreSolutions", 5,
"Restoring Solutions");
6721 "There is currently no way to restore not-zeroed vectors.");
6726 _console <<
"Restoring solutions on system " << sys->name() <<
"..." << std::endl;
6727 sys->restoreSolutions();
6731 _console <<
"Restoring solutions on Auxiliary system..." << std::endl;
6732 _aux->restoreSolutions();
6735 _console <<
"Restoring postprocessor, vector-postprocessor, and reporter data..." << std::endl;
6745 TIME_SECTION(
"saveOldSolutions", 5,
"Saving Old Solutions");
6748 sys->saveOldSolutions();
6749 _aux->saveOldSolutions();
6755 TIME_SECTION(
"restoreOldSolutions", 5,
"Restoring Old Solutions");
6758 sys->restoreOldSolutions();
6759 _aux->restoreOldSolutions();
6765 TIME_SECTION(
"outputStep", 1,
"Outputting");
6802 TIME_SECTION(
"onTimestepBegin", 2);
6804 for (
auto & nl :
_nl)
6805 nl->onTimestepBegin();
6821 switch (state.
state)
6830 mooseError(
"Unhandled state ", state.
state,
" in FEProblemBase::getTimeFromStateArg");
6836 const std::string & name,
6839 parallel_object_only();
6851 _aux->addDotVectors();
6852 for (
auto & nl :
_nl)
6854 nl->addDotVectors();
6856 auto tag_udot = nl->getTimeIntegrators()[0]->uDotFactorTag();
6857 if (!nl->hasVector(tag_udot))
6858 nl->associateVectorToTag(*nl->solutionUDot(), tag_udot);
6859 auto tag_udotdot = nl->getTimeIntegrators()[0]->uDotDotFactorTag();
6861 nl->associateVectorToTag(*nl->solutionUDotDot(), tag_udotdot);
6871 const std::string & name,
6874 parallel_object_only();
6877 mooseError(
"Vector bounds cannot be used with LinearSystems!");
6883 for (
auto & nl :
_nl)
6884 nl->setPredictor(predictor);
6908 residual->scale(-1.0);
6910 return residual->l2_norm();
6916 TIME_SECTION(
"computeResidualL2Norm", 2,
"Computing L2 Norm of Residual");
6920 for (
auto sys :
_nl)
6940 parallel_object_only();
6942 TIME_SECTION(
"computeResidualSys", 5);
6960 const unsigned int nl_sys_num)
6969 mooseAssert(
_fe_vector_tags.empty(),
"This should be empty indicating a clean starting state");
6992 "This should be empty indicating a clean starting state");
7004 for (
auto & tag : tags)
7022 for (
auto index :
make_range(matrix.row_start(), matrix.row_stop()))
7023 matrix.add(index, index, 0);
7026 _aux->zeroVariablesForResidual();
7050 for (
unsigned int tid = 0; tid <
n_threads; tid++)
7055 _aux->residualSetup();
7132 mooseError(
"An unhandled MooseException was raised during residual computation. Please " 7133 "contact the MOOSE team for assistance.");
7140 const std::set<TagID> & tags)
7142 parallel_object_only();
7144 TIME_SECTION(
"computeResidualInternal", 1);
7165 mooseError(
"An unhandled MooseException was raised during residual computation. Please " 7166 "contact the MOOSE team for assistance.");
7175 TIME_SECTION(
"computeResidualType", 5);
7196 mooseError(
"An unhandled MooseException was raised during residual computation. Please " 7197 "contact the MOOSE team for assistance.");
7204 auto create_exception_message =
7205 [&calling_method](
const std::string & exception_type,
const auto & exception)
7207 return std::string(
"A " + exception_type +
" was raised during FEProblemBase::" +
7208 calling_method +
"\n" + std::string(exception.what()));
7217 setException(create_exception_message(
"libMesh::LogicError", e));
7221 setException(create_exception_message(
"MooseException", e));
7223 catch (
const MetaPhysicL::LogicError & e)
7239 mooseError(create_exception_message(
"libMesh::PetscSolverException", e));
7241 catch (
const std::exception & e)
7243 const auto message = create_exception_message(
"std::exception", e);
7256 parallel_object_only();
7262 TIME_SECTION(
"computeResidualTags", 5,
"Computing Residual");
7264 ADReal::do_derivatives =
false;
7268 _aux->zeroVariablesForResidual();
7282 for (
unsigned int tid = 0; tid <
n_threads; tid++)
7287 _aux->residualSetup();
7358 const unsigned int nl_sys_num)
7365 for (
auto & tag : tags)
7374 const std::set<TagID> & tags)
7376 TIME_SECTION(
"computeJacobianInternal", 1);
7396 TIME_SECTION(
"computeJacobianTags", 5,
"Computing Jacobian");
7398 for (
auto tag : tags)
7410 for (
auto index :
make_range(matrix.row_start(), matrix.row_stop()))
7411 matrix.add(index, index, 0);
7414 _aux->zeroVariablesForJacobian();
7430 for (
unsigned int tid = 0; tid <
n_threads; tid++)
7435 _aux->jacobianSetup();
7443 for (
unsigned int tid = 0; tid <
n_threads; tid++)
7490 const unsigned int nl_sys_num)
7492 TIME_SECTION(
"computeTransientImplicitJacobian", 2);
7514 JacobianBlock jac_block(precond_system, jacobian, ivar, jvar);
7515 std::vector<JacobianBlock *>
blocks = {&jac_block};
7530 "I expect these system numbers to be the same");
7535 TIME_SECTION(
"computeBounds", 1,
"Computing Bounds");
7544 _aux->residualSetup();
7568 const bool compute_gradients)
7570 TIME_SECTION(
"computeLinearSystemSys", 5);
7603 const std::set<TagID> & vector_tags,
7604 const std::set<TagID> & matrix_tags,
7605 const bool compute_gradients)
7607 TIME_SECTION(
"computeLinearSystemTags", 5,
"Computing Linear System");
7611 for (
auto tag : matrix_tags)
7630 _aux->jacobianSetup();
7643 _console <<
"\nA MooseException was raised during Auxiliary variable computation.\n" 7644 <<
"The next solve will fail, the timestep will be reduced, and we will try again.\n" 7674 "I expect these system numbers to be the same");
7677 for (
unsigned int i = 0; i <
subspaceDim(
"NearNullSpace"); ++i)
7679 std::stringstream postfix;
7680 postfix <<
"_" << i;
7681 std::string modename =
"NearNullSpace" + postfix.str();
7691 "I expect these system numbers to be the same");
7693 for (
unsigned int i = 0; i <
subspaceDim(
"NullSpace"); ++i)
7695 std::stringstream postfix;
7696 postfix <<
"_" << i;
7706 "I expect these system numbers to be the same");
7708 for (
unsigned int i = 0; i <
subspaceDim(
"TransposeNullSpace"); ++i)
7710 std::stringstream postfix;
7711 postfix <<
"_" << i;
7721 bool & changed_search_direction,
7722 bool & changed_new_soln)
7725 "I expect these system numbers to be the same");
7736 TIME_SECTION(
"computePostCheck", 2,
"Computing Post Check");
7751 std::unique_ptr<NumericVector<Number>> ghosted_solution =
7753 ghosted_search_direction =
7757 *ghosted_solution = new_soln;
7758 *ghosted_search_direction = search_direction;
7769 new_soln = old_soln;
7770 new_soln.
add(-damping, search_direction);
7771 changed_new_soln =
true;
7778 if (changed_new_soln)
7779 *ghosted_solution = new_soln;
7781 bool updated_solution =
updateSolution(new_soln, *ghosted_solution);
7782 if (updated_solution)
7783 changed_new_soln =
true;
7790 _aux->copyCurrentIntoPreviousNL();
7794 changed_search_direction =
false;
7808 TIME_SECTION(
"computeDamping", 1,
"Computing Damping");
7849 parallel_object_only();
7858 TIME_SECTION(
"updateGeometricSearch", 3,
"Updating Geometric Search");
7869 TIME_SECTION(
"updateMortarMesh", 5,
"Updating Mortar Mesh");
7878 const std::pair<BoundaryID, BoundaryID> & primary_secondary_boundary_pair,
7879 const std::pair<SubdomainID, SubdomainID> & primary_secondary_subdomain_pair,
7883 const bool correct_edge_dropping,
7884 const Real minimum_projection_angle)
7890 primary_secondary_subdomain_pair,
7895 correct_edge_dropping,
7896 minimum_projection_angle);
7899 primary_secondary_subdomain_pair,
7904 correct_edge_dropping,
7905 minimum_projection_angle);
7910 const std::pair<BoundaryID, BoundaryID> & primary_secondary_boundary_pair,
7911 const std::pair<SubdomainID, SubdomainID> & primary_secondary_subdomain_pair,
7912 bool on_displaced)
const 7915 primary_secondary_boundary_pair, primary_secondary_subdomain_pair, on_displaced);
7920 const std::pair<BoundaryID, BoundaryID> & primary_secondary_boundary_pair,
7921 const std::pair<SubdomainID, SubdomainID> & primary_secondary_subdomain_pair,
7925 primary_secondary_boundary_pair, primary_secondary_subdomain_pair, on_displaced);
7939 TIME_SECTION(
"possiblyRebuildGeomSearchPatches", 5,
"Rebuilding Geometric Search Patches");
7973 libmesh_fallthrough();
7979 _console <<
"\n\nUpdating geometric search patches\n" << std::endl;
7995 #ifdef LIBMESH_ENABLE_AMR 8004 mooseError(
"HFEM does not support mesh adaptivity currently.");
8006 TIME_SECTION(
"initialAdaptMesh", 2,
"Performing Initial Adaptivity");
8008 for (
unsigned int i = 0; i < n; i++)
8025 _console <<
"Mesh unchanged, skipping remaining steps..." << std::endl;
8041 TIME_SECTION(
"adaptMesh", 3,
"Adapting Mesh");
8045 bool mesh_changed =
false;
8047 for (
unsigned int i = 0; i < cycles_per_step; ++i)
8050 mooseError(
"HFEM does not support mesh adaptivity currently.");
8056 bool mesh_changed_this_step;
8059 if (mesh_changed_this_step)
8061 mesh_changed =
true;
8074 _console <<
"Mesh unchanged, skipping remaining steps..." << std::endl;
8090 return mesh_changed;
8092 #endif // LIBMESH_ENABLE_AMR 8106 data[tid] = &storage.getMaterialData(tid);
8113 for (
unsigned int i = 0; i <
n_threads; ++i)
8125 TIME_SECTION(
"updateMeshXFEM", 5,
"Updating XFEM");
8127 bool updated =
false;
8130 if (
_xfem->updateHeal())
8135 false,
true,
false);
8141 false,
true,
false);
8151 const bool contract_mesh,
8152 const bool clean_refinement_flags)
8154 TIME_SECTION(
"meshChanged", 3,
"Handling Mesh Changes");
8172 if (intermediate_change)
8180 if (clean_refinement_flags)
8188 if (!intermediate_change)
8238 for (
auto & nl_sys :
_nl)
8239 nl_sys->reinitMortarFunctors();
8256 Threads::parallel_reduce(range, pmp);
8264 for (
const auto & elem : range)
8277 Threads::parallel_reduce(range, pmp);
8281 for (
const auto & elem : range)
8284 for (
auto && child : coarsened_children)
8320 mdi->meshDisplaced();
8329 Threads::parallel_reduce(elem_range, cmt);
8331 cmt(elem_range,
true);
8337 TIME_SECTION(
"checkProblemIntegrity", 5);
8340 const auto & subdomain_names = getParam<std::vector<SubdomainName>>(
"block");
8342 std::set<SubdomainID> mesh_subdomains(mesh_subdomains_vec.begin(), mesh_subdomains_vec.end());
8348 std::set<SubdomainID>
blocks;
8351 blocks = mesh_subdomains;
8354 blocks = mesh_subdomains;
8362 "\" not found in mesh.");
8374 "\" not found in mesh.");
8378 for (
auto & nl :
_nl)
8379 nl->checkKernelCoverage(
blocks);
8384 #ifdef LIBMESH_ENABLE_AMR 8389 _console <<
"Using EXPERIMENTAL Stateful Material Property projection with Adaptivity!\n" 8394 std::set<SubdomainID> local_mesh_subs(mesh_subdomains);
8403 bool check_material_coverage =
false;
8405 for (
const auto &
id : ids)
8407 local_mesh_subs.erase(
id);
8408 check_material_coverage =
true;
8419 "Subdomain \"" + subdomain_name +
"\" not found in mesh.");
8420 local_mesh_subs.erase(
id);
8425 std::set<SubdomainID>
blocks(local_mesh_subs);
8431 "Subdomain \"" + subdomain_name +
"\" not found in mesh.");
8434 for (
const auto id :
blocks)
8435 local_mesh_subs.erase(
id);
8440 for (
auto subdomain_id : mortar_subdomain_ids)
8441 local_mesh_subs.erase(subdomain_id);
8444 if (check_material_coverage && !local_mesh_subs.empty())
8446 std::stringstream extra_subdomain_ids;
8448 std::copy(local_mesh_subs.begin(),
8449 local_mesh_subs.end(),
8450 std::ostream_iterator<unsigned int>(extra_subdomain_ids,
" "));
8452 std::vector<SubdomainID> local_mesh_subs_vec(local_mesh_subs.begin(),
8453 local_mesh_subs.end());
8455 mooseError(
"The following blocks from your input mesh do not contain an active material: " +
8456 extra_subdomain_ids.str() +
8458 ")\nWhen ANY mesh block contains a Material object, " 8459 "all blocks must contain a Material object.\n");
8469 for (
const auto & material : materials)
8470 material->checkStatefulSanity();
8490 mooseError(
"Coordinate transformation parameters, listed below, are only to be used in the " 8491 "context of application to application field transfers at this time. The mesh is " 8492 "not modified by these parameters within an application.\n" 8493 "You should likely use a 'TransformGenerator' in the [Mesh] block to achieve the " 8494 "desired mesh modification.\n\n",
8511 bool mesh_has_second_order_elements =
false;
8517 mesh_has_second_order_elements =
true;
8527 if (mesh_has_second_order_elements)
8529 const std::vector<std::string> & displacement_variables =
8532 for (
const auto & var_name : displacement_variables)
8540 mooseError(
"Error: mesh has SECOND order elements, so all displacement variables must be " 8552 std::set<SubdomainID> user_objects_blocks;
8556 std::set<std::string> names;
8558 std::vector<UserObject *> objects;
8561 for (
const auto & obj : objects)
8562 names.insert(obj->name());
8565 std::set<SubdomainID> difference;
8566 std::set_difference(user_objects_blocks.begin(),
8567 user_objects_blocks.end(),
8568 mesh_subdomains.begin(),
8569 mesh_subdomains.end(),
8570 std::inserter(difference, difference.end()));
8572 if (!difference.empty())
8574 std::ostringstream oss;
8575 oss <<
"One or more UserObjects is referencing a nonexistent block:\n";
8576 for (
const auto &
id : difference)
8584 const std::map<
SubdomainID, std::vector<std::shared_ptr<MaterialBase>>> & materials_map)
8586 for (
const auto & it : materials_map)
8589 std::set<std::string> block_depend_props, block_supplied_props;
8591 for (
const auto & mat1 : it.second)
8593 const std::set<std::string> & depend_props = mat1->getRequestedItems();
8594 block_depend_props.insert(depend_props.begin(), depend_props.end());
8596 auto & alldeps = mat1->getMatPropDependencies();
8597 for (
auto & dep : alldeps)
8599 block_depend_props.insert(*
name);
8602 for (
const auto & mat2 : it.second)
8604 const std::set<std::string> & supplied_props = mat2->MaterialBase::getSuppliedItems();
8605 block_supplied_props.insert(supplied_props.begin(), supplied_props.end());
8614 std::set<std::string> difference;
8615 std::set_difference(block_depend_props.begin(),
8616 block_depend_props.end(),
8617 block_supplied_props.begin(),
8618 block_supplied_props.end(),
8619 std::inserter(difference, difference.end()));
8621 if (!difference.empty())
8623 std::ostringstream oss;
8624 oss <<
"One or more Material Properties were not supplied on block ";
8626 if (subdomain_name.length() > 0)
8627 oss << subdomain_name <<
" (" << it.first <<
")";
8631 for (
const auto &
name : difference)
8632 oss <<
name <<
"\n";
8638 for (
const auto & it : materials_map)
8640 const auto & materials = it.second;
8641 std::set<std::string> inner_supplied, outer_supplied;
8643 for (
const auto & outer_mat : materials)
8646 outer_supplied = outer_mat->getSuppliedItems();
8647 inner_supplied.clear();
8650 std::map<std::string, std::set<std::string>> prop_to_mat;
8651 for (
const auto &
name : outer_supplied)
8652 prop_to_mat[
name].insert(outer_mat->name());
8654 for (
const auto & inner_mat : materials)
8656 if (outer_mat == inner_mat)
8660 auto outer_mat_type = outer_mat->type();
8661 auto inner_mat_type = inner_mat->type();
8666 if (outer_mat_type == inner_mat_type && outer_mat_type != outer_mat->type() &&
8667 inner_mat_type != inner_mat->type())
8670 inner_supplied.insert(inner_mat->getSuppliedItems().begin(),
8671 inner_mat->getSuppliedItems().end());
8673 for (
const auto & inner_supplied_name : inner_supplied)
8674 prop_to_mat[inner_supplied_name].insert(inner_mat->name());
8678 std::set<std::string> intersection;
8679 std::set_intersection(outer_supplied.begin(),
8680 outer_supplied.end(),
8681 inner_supplied.begin(),
8682 inner_supplied.end(),
8683 std::inserter(intersection, intersection.end()));
8685 if (!intersection.empty())
8687 std::ostringstream oss;
8688 oss <<
"The following material properties are declared on block " << it.first
8689 <<
" by multiple materials:\n";
8691 <<
"Material Objects\n";
8692 for (
const auto & outer_name : intersection)
8695 for (
const auto & inner_name : prop_to_mat[outer_name])
8696 oss << inner_name <<
" ";
8718 mooseInfo(
"Restart file ", file_name,
" is NOT being used since we are performing recovery.");
8724 mooseInfo(
"Using ", file_name,
" for restart.");
8728 std::vector<VariableName>
8731 std::vector<VariableName> names;
8735 const std::vector<VariableName> & var_names = sys->getVariableNames();
8736 names.insert(names.end(), var_names.begin(), var_names.end());
8739 const std::vector<VariableName> & aux_var_names =
_aux->getVariableNames();
8740 names.insert(names.end(), aux_var_names.begin(), aux_var_names.end());
8749 "Solver system number '" << solver_sys_num <<
"' is out of bounds. We have '" 8766 auto random_data_ptr = insert_pair.first->second.get();
8776 bnd_mat_side_cache =
false;
8778 if (
_aux->needMaterialOnSide(bnd_id))
8780 bnd_mat_side_cache =
true;
8784 for (
auto & nl :
_nl)
8785 if (nl->needBoundaryMaterialOnSide(bnd_id, tid))
8787 bnd_mat_side_cache =
true;
8798 bnd_mat_side_cache =
true;
8812 interface_mat_side_cache =
false;
8814 for (
auto & nl :
_nl)
8815 if (nl->needInterfaceMaterialOnSide(bnd_id, tid))
8817 interface_mat_side_cache =
true;
8828 interface_mat_side_cache =
true;
8833 interface_mat_side_cache =
true;
8847 for (
auto & nl :
_nl)
8848 if (nl->needSubdomainMaterialOnSide(subdomain_id, tid))
8879 mooseError(
"Previous nonlinear solution is required but not added through " 8880 "Problem/previous_nl_solution_required=true");
8897 const std::string & object_name,
8900 parallel_object_only();
8907 mooseError(
"The name '", object_name,
"' is a reserved name for output objects");
8911 if (output_warehouse.
hasOutput(object_name))
8912 mooseError(
"An output object named '", object_name,
"' already exists");
8918 std::vector<std::string> exclude;
8919 if (object_type ==
"Console")
8921 exclude.push_back(
"execute_on");
8929 else if (object_type ==
"Checkpoint")
8930 exclude.push_back(
"execute_on");
8936 if (common && std::find(exclude.begin(), exclude.end(),
"execute_on") != exclude.
end() &&
8939 "'execute_on' parameter specified in [Outputs] block is ignored for object '" +
8941 "'.\nDefine this object in its own sub-block of [Outputs] to modify its " 8942 "execution schedule.");
8945 if (object_type ==
"XDR")
8947 else if (object_type ==
"XDA")
8951 if (object_name ==
"auto_recovery_checkpoint")
8983 else if (sys_name ==
"aux0")
8986 mooseError(
"System '" + sys_name +
"' was requested from problem but does not exist.");
9001 mooseAssert(sys_num <
_nl.size(),
"System number greater than the number of nonlinear systems");
9002 return *
_nl[sys_num];
9008 mooseAssert(sys_num <
_nl.size(),
"System number greater than the number of nonlinear systems");
9009 return *
_nl[sys_num];
9016 "System number greater than the number of linear systems");
9024 "System number greater than the number of linear systems");
9032 "System number greater than the number of solver systems");
9040 "System number greater than the number of solver systems");
9059 parallel_object_only();
9103 const std::vector<Point> *
const pts,
9104 const std::vector<Real> *
const weights,
9116 unsigned int neighbor_side,
9118 const std::vector<Point> *
const pts,
9119 const std::vector<Real> *
const weights,
9132 std::vector<std::shared_ptr<MaterialBase>> & face_materials,
9133 std::vector<std::shared_ptr<MaterialBase>> & neighbor_materials,
9134 std::set<MooseVariableFieldBase *> & variables,
9139 auto & this_face_mats =
9141 for (std::shared_ptr<MaterialBase> face_mat : this_face_mats)
9142 if (face_mat->ghostable())
9144 face_materials.push_back(face_mat);
9145 auto & var_deps = face_mat->getMooseVariableDependencies();
9146 for (
auto * var : var_deps)
9150 "Ghostable materials should only have finite volume variables coupled into them.");
9151 else if (face_mat->hasStatefulProperties())
9152 mooseError(
"Finite volume materials do not currently support stateful properties.");
9153 variables.insert(var);
9160 auto & this_neighbor_mats =
9162 for (std::shared_ptr<MaterialBase> neighbor_mat : this_neighbor_mats)
9163 if (neighbor_mat->ghostable())
9165 neighbor_materials.push_back(neighbor_mat);
9167 auto & var_deps = neighbor_mat->getMooseVariableDependencies();
9168 for (
auto * var : var_deps)
9172 "Ghostable materials should only have finite volume variables coupled into them.");
9173 else if (neighbor_mat->hasStatefulProperties())
9174 mooseError(
"Finite volume materials do not currently support stateful properties.");
9175 auto pr = variables.insert(var);
9176 mooseAssert(!pr.second,
9177 "We should not have inserted any new variables dependencies from our " 9178 "neighbor materials that didn't exist for our face materials");
9187 const unsigned int nqp,
9198 "There must be one convergence object per nonlinear system");
9214 const std::vector<ConvergenceName> &
9219 mooseError(
"The nonlinear system convergence name(s) have not been set.");
9234 paramError(
"linear_convergence",
"There must be one convergence object per linear system");
9238 const std::vector<ConvergenceName> &
9243 mooseError(
"The linear convergence name(s) have not been set.");
9246 const ConvergenceName &
9252 mooseError(
"The fixed point convergence name has not been set.");
9255 const ConvergenceName &
9261 mooseError(
"The steady convergence name has not been set.");
9272 _nl[i]->residualSetup();
9286 _nl[i]->jacobianSetup();
9306 return current_nl_sys_num;
9317 return current_linear_sys_num;
9334 std::vector<MortarUserObject *>
9337 const bool displaced,
9338 const std::vector<MortarUserObject *> & mortar_uo_superset)
9340 std::vector<MortarUserObject *> mortar_uos;
9342 : static_cast<SubProblem *>(
this);
9343 for (
auto *
const obj : mortar_uo_superset)
9344 if (obj->onInterface(primary_boundary_id, secondary_boundary_id) &&
9345 (&obj->getSubProblem() == subproblem))
9346 mortar_uos.push_back(obj);
9351 std::vector<MortarUserObject *>
9354 const bool displaced)
9356 std::vector<MortarUserObject *> mortar_uos;
9360 .queryInto(mortar_uos);
9361 return getMortarUserObjects(primary_boundary_id, secondary_boundary_id, displaced, mortar_uos);
9367 const bool displaced)
9369 const auto mortar_uos =
9371 for (
auto *
const mortar_uo : mortar_uos)
9373 mortar_uo->setNormals();
9374 mortar_uo->reinit();
9406 mooseAssert(nl_sys_num <
_nl.size(),
9407 "System number greater than the number of nonlinear systems");
9416 "System number greater than the number of linear systems");
9429 solver_sys->compute(
type);
9511 return solver_params;
bool _reinit_displaced_elem
Whether to call DisplacedProblem::reinitElem when this->reinitElem is called.
This class determines the maximum number of Quadrature Points and Shape Functions used for a given si...
virtual void addInterfaceMaterial(const std::string &material_name, const std::string &name, InputParameters ¶meters)
std::map< NonlinearSystemName, unsigned int > _nl_sys_name_to_num
Map from nonlinear system name to number.
void setCurrentAlgebraicElementRange(libMesh::ConstElemRange *range)
These functions allow setting custom ranges for the algebraic elements, nodes, and boundary nodes tha...
std::string indent(unsigned int spaces)
Create empty string for indenting.
std::vector< Point > _point_zero
Interface for objects that need parallel consistent random numbers without patterns over the course o...
void updateVariableDependency(std::set< MooseVariableFieldBase *> &needed_moose_vars, THREAD_ID tid=0) const
Update variable dependency vector.
virtual void addCachedResidual(const THREAD_ID tid)
virtual void computeJacobianTag(const NumericVector< libMesh::Number > &soln, libMesh::SparseMatrix< libMesh::Number > &jacobian, TagID tag)
Form a Jacobian matrix for a given tag.
void addObject(std::shared_ptr< T > object, THREAD_ID tid=0, bool recurse=true) override
Adds an object to the storage structure.
unsigned short getCurrentICState()
Retrieves the current initial condition state.
virtual void addFVInitialCondition(const std::string &ic_name, const std::string &name, InputParameters ¶meters)
Add an initial condition for a finite volume variables.
bool adaptMesh(std::string marker_name=std::string())
Adapts the mesh based on the error estimator used.
void sort(THREAD_ID tid=0)
Sort the objects using the DependencyResolver.
virtual void addMaterialHelper(std::vector< MaterialWarehouse *> warehouse, const std::string &material_name, const std::string &name, InputParameters ¶meters)
bool initialAdaptMesh()
Used during initial adaptivity.
virtual void residualSetup(THREAD_ID tid=0) const
virtual bool hasVariable(const std::string &var_name) const override
Whether or not this problem has the variable.
virtual void stopSolve(const ExecFlagType &exec_flag, const std::set< TagID > &vector_tags_to_close) override
Quit the current solve as soon as possible.
bool hasInvalidSolutionError() const
Whether or not an invalid solution was encountered that was an error.
void mooseInfo(Args &&... args) const
void setActiveMaterialProperties(const std::unordered_set< unsigned int > &mat_prop_ids, const THREAD_ID tid)
Record and set the material properties required by the current computing thread.
const bool _regard_general_exceptions_as_errors
If we catch an exception during residual/Jacobian evaluaton for which we don't have specific handling...
const std::size_t _num_nl_sys
The number of nonlinear systems.
void setVariableAllDoFMap(const std::vector< const MooseVariableFEBase *> &moose_vars)
void computeJacobianBlocks(std::vector< JacobianBlock *> &blocks)
Computes several Jacobian blocks simultaneously, summing their contributions into smaller preconditio...
virtual void initPetscOutputAndSomeSolverSettings()
Reinitialize PETSc output for proper linear/nonlinear iteration display.
const std::vector< ConvergenceName > & getNonlinearConvergenceNames() const
Gets the nonlinear system convergence object name(s).
MetaPhysicL::DualNumber< V, D, asd > abs(const MetaPhysicL::DualNumber< V, D, asd > &a)
void timestepSetup() override
virtual void addSampler(const std::string &type, const std::string &name, InputParameters ¶meters)
The following functions will enable MOOSE to have the capability to import Samplers.
bool _skip_exception_check
If or not skip 'exception and stop solve'.
const std::vector< std::string > & get_global_var_names()
bool isFiniteVolumeInfoDirty() const
Helper class for holding the preconditioning blocks to fill.
virtual void restore_original_nonzero_pattern()
bool _reinit_displaced_neighbor
Whether to call DisplacedProblem::reinitNeighbor when this->reinitNeighbor is called.
virtual void clearActiveFEVariableCoupleableMatrixTags(const THREAD_ID tid)
void outputStep(ExecFlagType type)
Calls the outputStep method for each output object.
virtual void meshChanged()
Deprecated.
virtual void addDamper(const std::string &damper_name, const std::string &name, InputParameters ¶meters)
std::map< LinearSystemName, unsigned int > _linear_sys_name_to_num
Map from linear system name to number.
virtual void clearActiveFEVariableCoupleableVectorTags(const THREAD_ID tid)
libMesh::ConstElemRange * getActiveLocalElementRange()
Return pointers to range objects for various types of ranges (local nodes, boundary elems...
void getFVMatsAndDependencies(SubdomainID block_id, std::vector< std::shared_ptr< MaterialBase >> &face_materials, std::vector< std::shared_ptr< MaterialBase >> &neighbor_materials, std::set< MooseVariableFieldBase *> &variables, const THREAD_ID tid)
Get the materials and variables potentially needed for FV.
std::vector< MooseArray< ADRealTensorValue > > _ad_second_zero
bool _have_ad_objects
AD flag indicating whether any AD objects have been added.
void shift()
Shift the material properties in time.
virtual void prepareFace(const Elem *elem, const THREAD_ID tid) override
Base class for function objects.
void setPreserveMatrixSparsityPattern(bool preserve)
Set whether the sparsity pattern of the matrices being formed during the solve (usually the Jacobian)...
void reinitBecauseOfGhostingOrNewGeomObjects(bool mortar_changed=false)
Call when it is possible that the needs for ghosted elements has changed.
void fill_data(std::map< processor_id_type, std::vector< std::set< unsigned int >>> &data, int M)
virtual void addTransfer(const std::string &transfer_name, const std::string &name, InputParameters ¶meters)
Add a Transfer to the problem.
virtual libMesh::System & getSystem(const std::string &var_name) override
Returns the equation system containing the variable provided.
virtual void setActiveScalarVariableCoupleableMatrixTags(std::set< TagID > &mtags, const THREAD_ID tid)
static const std::string app_param
The name of the parameter that contains the MooseApp.
A MultiMooseEnum object to hold "execute_on" flags.
static SolverParams makeLinearSolverParams()
Make basic solver params for linear solves.
bool _parallel_barrier_messaging
Whether or not information about how many transfers have completed is printed.
MooseVariableFieldBase & getVariableHelper(const THREAD_ID tid, const std::string &var_name, Moose::VarKindType expected_var_type, Moose::VarFieldType expected_var_field_type, const std::vector< T > &nls, const SystemBase &aux) const
Helper function called by getVariable that handles the logic for checking whether Variables of the re...
virtual void addResidualLower(const THREAD_ID tid) override
A class for creating restricted objects.
bool isUltimateMaster() const
Whether or not this app is the ultimate master app.
virtual void addJacobianLowerD(const THREAD_ID tid) override
Factory & _factory
The Factory for building objects.
virtual void clearActiveScalarVariableCoupleableVectorTags(const THREAD_ID tid) override
MaterialPropertyStorage & _bnd_material_props
virtual void addGhostedElem(dof_id_type elem_id) override
Will make sure that all dofs connected to elem_id are ghosted to this processor.
void setNonlocalCouplingMatrix()
Set custom coupling matrix for variables requiring nonlocal contribution.
Threads::spin_mutex get_function_mutex
void initialSetup()
Calls the initialSetup function for each of the output objects.
virtual Real & time() const
virtual const char * what() const
Get out the error message.
std::vector< std::pair< MooseVariableFEBase *, MooseVariableFEBase * > > & couplingEntries(const THREAD_ID tid, const unsigned int nl_sys_num)
const Variable & variable(unsigned int var) const
void checkDependMaterialsHelper(const std::map< SubdomainID, std::vector< std::shared_ptr< MaterialBase >>> &materials_map)
Helper method for checking Material object dependency.
void extraSparsity(libMesh::SparsityPattern::Graph &sparsity, std::vector< dof_id_type > &n_nz, std::vector< dof_id_type > &n_oz, void *context)
Free function used for a libMesh callback.
void projectFunctionOnCustomRange(ConstElemRange &elem_range, Number(*func)(const Point &, const libMesh::Parameters &, const std::string &, const std::string &), Gradient(*func_grad)(const Point &, const libMesh::Parameters &, const std::string &, const std::string &), const libMesh::Parameters ¶ms, const VariableName &target_var)
Project a function onto a range of elements for a given variable.
virtual void cacheResidualNeighbor(const THREAD_ID tid) override
ExecFlagType _current_execute_on_flag
Current execute_on flag.
const std::set< SubdomainID > & interiorLowerDBlocks() const
void clearCurrentResidualVectorTags()
Clear the current residual vector tag data structure.
bool hasActiveBlockObjects(THREAD_ID tid=0) const
QueryCache is a convenient way to construct and pass around (possible partially constructed) warehous...
std::shared_ptr< DisplacedProblem > displaced_problem
const unsigned int invalid_uint
virtual void reinitLowerDElem(const Elem *lower_d_elem, const THREAD_ID tid, const std::vector< Point > *const pts=nullptr, const std::vector< Real > *const weights=nullptr)
RelationshipManagerType
Main types of Relationship Managers.
bool hasVector(const std::string &tag_name) const
Check if the named vector exists in the system.
unsigned int get_node_index(const Node *node_ptr) const
virtual void checkExceptionAndStopSolve(bool print_message=true)
Check to see if an exception has occurred on any processor and, if possible, force the solve to fail...
virtual void meshDisplaced()
Update data after a mesh displaced.
const std::set< BoundaryID > & getSubdomainBoundaryIds(const SubdomainID subdomain_id) const
Get the list of boundary ids associated with the given subdomain id.
std::optional< ConvergenceName > _multiapp_fixed_point_convergence_name
MultiApp fixed point convergence name.
const std::string & name() const
MooseAppCoordTransform & coordTransform()
virtual void setActiveFEVariableCoupleableMatrixTags(std::set< TagID > &mtags, const THREAD_ID tid) override
void setCurrentAlgebraicNodeRange(libMesh::ConstNodeRange *range)
void setResidualObjectParamsAndLog(const std::string &ro_name, const std::string &name, InputParameters ¶ms, const unsigned int nl_sys_num, const std::string &base_name, bool &reinit_displaced)
Set the subproblem and system parameters for residual objects and log their addition.
const AutomaticMortarGeneration & getMortarInterface(const std::pair< BoundaryID, BoundaryID > &boundary_key, const std::pair< SubdomainID, SubdomainID > &, bool on_displaced) const
Getter to retrieve the AutomaticMortarGeneration object corresponding to the boundary and subdomain k...
void paramError(const std::string ¶m, Args... args) const
Emits an error prefixed with the file and line number of the given param (from the input file) along ...
const std::map< SubdomainID, std::vector< std::shared_ptr< T > > > & getActiveBlockObjects(THREAD_ID tid=0) const
Real computeDamping(const NumericVector< Number > &solution, const NumericVector< Number > &update)
Compute damping.
const T & getParam(const std::string &name) const
Retrieve a parameter for the object.
virtual void reinitNode(const Node *node, const THREAD_ID tid) override
virtual std::size_t numNonlinearSystems() const override
Base class for implementing interface user objects.
virtual void setPreviousNewtonSolution(const NumericVector< Number > &soln)
virtual void predictorCleanup(NumericVector< libMesh::Number > &ghosted_solution)
Perform cleanup tasks after application of predictor to solution vector.
virtual void prepare(const Elem *elem, const THREAD_ID tid) override
TagID rightHandSideVectorTag() const
virtual Elem * elemPtr(const dof_id_type i)
TagID systemMatrixTag() const override
Return the Matrix Tag ID for System.
NumericVector< Number > & solution()
bool hasObjects(THREAD_ID tid=0) const
Convenience functions for determining if objects exist.
bool _has_jacobian
Indicates if the Jacobian was computed.
virtual bool haveFV() const override
returns true if this problem includes/needs finite volume functionality.
Interface for objects acting when the mesh has been displaced.
static void uniformRefine(MooseMesh *mesh, unsigned int level=libMesh::invalid_uint)
Performs uniform refinement of the passed Mesh object.
bool _has_dampers
Whether or not this system has any Dampers associated with it.
MooseObjectWarehouse< InternalSideIndicatorBase > _internal_side_indicators
std::vector< SubdomainName > _kernel_coverage_blocks
const std::map< dof_id_type, std::vector< dof_id_type > > & nodeToActiveSemilocalElemMap()
If not already created, creates a map from every node to all active semilocal elements to which they ...
virtual Distribution & getDistribution(const std::string &name)
void swapBack(const Elem &elem, unsigned int side=0)
material properties for given element (and possible side)
bool _has_nonlocal_coupling
Indicates if nonlocal coupling is required/exists.
void setCurrentAlgebraicBndNodeRange(ConstBndNodeRange *range)
void dof_indices(const Elem *const elem, std::vector< dof_id_type > &di) const
This is the base class for Samplers as used within the Stochastic Tools module.
Base class for predictors.
bool areCoupled(const unsigned int ivar, const unsigned int jvar, const unsigned int nl_sys_num) const
Moose::LineSearchType _line_search
void setPostprocessorValueByName(const PostprocessorName &name, const PostprocessorValue &value, std::size_t t_index=0)
Set the value of a PostprocessorValue.
virtual void clearActiveScalarVariableCoupleableMatrixTags(const THREAD_ID tid) override
virtual void postExecute()
Method called at the end of the simulation.
void reinit(bool reinit_for_derivative_reordering=false)
Fill out the VariableValue arrays from the system solution vector.
unsigned int number() const
Get variable number coming from libMesh.
void eraseProperty(const Elem *elem)
Remove the property storage and element pointer from internal data structures Use this when elements ...
bool isSolverSystemNonlinear(const unsigned int sys_num)
Check if the solver system is nonlinear.
void petscSetDefaults(FEProblemBase &problem)
Sets the default options for PETSc.
std::unordered_set< TagID > _not_zeroed_tagged_vectors
the list of vector tags that will not be zeroed when all other tags are
void joinAndFinalize(TheWarehouse::Query query, bool isgen=false)
bool hasInitialBackup() const
std::vector< MooseArray< ADRealVectorValue > > _ad_grad_zero
std::vector< SolverParams > _solver_params
InputParameterWarehouse & getInputParameterWarehouse()
Get the InputParameterWarehouse for MooseObjects.
ExecuteMooseObjectWarehouse< Control > _control_warehouse
The control logic warehouse.
void updateActive(THREAD_ID tid=0) override
Updates the active objects storage.
virtual std::pair< bool, unsigned int > determineSolverSystem(const std::string &var_name, bool error_if_not_found=false) const override
Determine what solver system the provided variable name lies in.
std::unique_ptr< libMesh::ConstNodeRange > _current_algebraic_node_range
virtual void setActiveScalarVariableCoupleableMatrixTags(std::set< TagID > &mtags, const THREAD_ID tid) override
void setCoupling(Moose::CouplingType type)
Set the coupling between variables TODO: allow user-defined coupling.
constexpr std::size_t constMaxQpsPerElem
This is used for places where we initialize some qp-sized data structures that would end up being siz...
const ExecFlagType & getCurrentExecuteOnFlag() const
Return/set the current execution flag.
unsigned int _cycles_completed
bool _currently_computing_jacobian
Flag to determine whether the problem is currently computing Jacobian.
virtual void reinitScalars(const THREAD_ID tid, bool reinit_for_derivative_reordering=false) override
fills the VariableValue arrays for scalar variables from the solution vector
const ExecFlagEnum & getExecuteOnEnum() const
Return the app level ExecFlagEnum, this contains all the available flags for the app.
virtual void init() override
void add(std::shared_ptr< MooseObject > obj)
add adds a new object to the warehouse and stores attributes/metadata about it for running queries/fi...
void translateMetaPhysicLError(const MetaPhysicL::LogicError &)
emit a relatively clear error message when we catch a MetaPhysicL logic error
virtual void getDiracElements(std::set< const Elem *> &elems) override
Fills "elems" with the elements that should be looped over for Dirac Kernels.
virtual void setActiveElementalMooseVariables(const std::set< MooseVariableFieldBase *> &moose_vars, const THREAD_ID tid)
Set the MOOSE variables to be reinited on each element.
void parentOutputPositionChanged()
Calls parentOutputPositionChanged() on all sub apps.
void setupDM()
Setup the PETSc DM object (when appropriate)
virtual void setCurrentBoundaryID(BoundaryID bid, const THREAD_ID tid)
sets the current boundary ID in assembly
virtual void addInterfaceKernel(const std::string &kernel_name, const std::string &name, InputParameters ¶meters)
virtual void neighborSubdomainSetup(THREAD_ID tid=0) const
libMesh::LinearImplicitSystem & linearImplicitSystem()
Return a reference to the stored linear implicit system.
bool _is_petsc_options_inserted
If or not PETSc options have been added to database.
void setCurrentlyComputingResidual(bool currently_computing_residual) final
Set whether or not the problem is in the process of computing the residual.
virtual void addMaterial(const std::string &material_name, const std::string &name, InputParameters ¶meters)
virtual void lineSearch()
execute MOOSE line search
const std::vector< T > & getSortedValues()
This function also returns dependency resolved values but with a simpler single vector interface...
unsigned int getCyclesPerStep() const
Pull out the number of cycles_per_step previously set through the AdaptivityAction.
virtual void setCurrentLowerDElem(const Elem *const lower_d_elem, const THREAD_ID tid)
Set the current lower dimensional element.
const Elem * getLowerDElem(const Elem *, unsigned short int) const
Returns a const pointer to a lower dimensional element that corresponds to a side of a higher dimensi...
NonlocalIntegratedBC is used for solving integral terms in integro-differential equations.
virtual bool checkNonlocalCouplingRequirement() const override
virtual bool uDotDotRequested()
Get boolean flag to check whether solution second time derivative needs to be stored.
void updateErrorVectors()
Update the ErrorVectors that have been requested through calls to getErrorVector().
const InputParameters & parameters() const
Get the parameters of the object.
unsigned short _current_ic_state
virtual void reinitNeighborPhys(const Elem *neighbor, unsigned int neighbor_side, const std::vector< Point > &physical_points, const THREAD_ID tid) override
virtual TagID addVectorTag(const TagName &tag_name, const Moose::VectorTagType type=Moose::VECTOR_TAG_RESIDUAL)
Create a Tag.
std::vector< MeshDisplacedInterface * > _notify_when_mesh_displaces
Objects to be notified when the mesh displaces.
std::vector< T * > & queryInto(std::vector< T *> &results, Args &&... args)
queryInto executes the query and stores the results in the given vector.
void trustUserCouplingMatrix()
Whether to trust the user coupling matrix even if we want to do things like be paranoid and create a ...
virtual void newAssemblyArray(std::vector< std::shared_ptr< SolverSystem >> &solver_systems)
const bool _uo_aux_state_check
Whether or not checking the state of uo/aux evaluation.
virtual const std::set< MooseVariableFieldBase * > & getActiveElementalMooseVariables(const THREAD_ID tid) const
Get the MOOSE variables to be reinited on each element.
This is a template class that implements the workhorse compute and computeNodal methods.
virtual void addMeshDivision(const std::string &type, const std::string &name, InputParameters ¶ms)
Add a MeshDivision.
const ExecFlagType EXEC_NONE
A struct for storing the various types of petsc options and values.
virtual void computeMarkers()
void reportMooseObjectDependency(MooseObject *a, MooseObject *b)
Register a MOOSE object dependency so we can either order operations properly or report when we canno...
void residualSetup() override
MaterialDataType
MaterialData types.
void computeUserObjectsInternal(const ExecFlagType &type, const Moose::AuxGroup &group, TheWarehouse::Query &query)
TagID nonTimeVectorTag() const override
A class for "pretty printing" a table of data.
virtual void addCachedJacobian(const THREAD_ID tid)
const std::string & getBoundaryName(BoundaryID boundary_id)
Return the name of the boundary given the id.
void cacheChangedLists()
Cache information about what elements were refined and coarsened in the previous step.
virtual void residualSetup()
Positions objects are under the hood Reporters.
void reinitMortarUserObjects(BoundaryID primary_boundary_id, BoundaryID secondary_boundary_id, bool displaced)
Call reinit on mortar user objects with matching primary boundary ID, secondary boundary ID...
virtual TagID systemMatrixTag() const override
Return the Matrix Tag ID for System.
virtual void associateVectorToTag(NumericVector< Number > &vec, TagID tag)
Associate a vector for a given tag.
virtual void reinitNodes(const std::vector< dof_id_type > &nodes, const THREAD_ID tid) override
virtual void updateActiveObjects()
Update the active objects in the warehouses.
Stores the stateful material properties computed by materials.
virtual void computeIndicatorsAndMarkers()
void reinitMaterialsBoundary(BoundaryID boundary_id, const THREAD_ID tid, bool swap_stateful=true, const std::deque< MaterialBase *> *reinit_mats=nullptr)
reinit materials on a boundary
virtual void addJacobianOffDiagScalar(unsigned int ivar, const THREAD_ID tid=0)
virtual void setException(const std::string &message)
Set an exception, which is stored at this point by toggling a member variable in this class...
virtual void addJacobian(const THREAD_ID tid) override
void addFunctor(const std::string &name, const Moose::FunctorBase< T > &functor, const THREAD_ID tid)
add a functor to the problem functor container
virtual libMesh::System & system()=0
Get the reference to the libMesh system.
std::filesystem::path restartFolderBase(const std::filesystem::path &folder_base) const
The file suffix for restartable data.
virtual void addAuxScalarKernel(const std::string &kernel_name, const std::string &name, InputParameters ¶meters)
virtual void customSetup(const ExecFlagType &exec_type, THREAD_ID tid=0) const
bool isReservedName(const std::string &name)
Test if the given name is reserved.
bool globalADIndexing()
Whether we are using global AD indexing.
bool hasOutput(const std::string &name) const
Returns true if the output object exists.
Base class for MOOSE-based applications.
void disable_refine_in_reinit()
void mooseInfoRepeated(Args &&... args)
Emit an informational message with the given stringified, concatenated args.
PetscOptions _petsc_option_data_base
bool needBoundaryMaterialOnSide(BoundaryID bnd_id, const THREAD_ID tid)
These methods are used to determine whether stateful material properties need to be stored on interna...
virtual const std::vector< VectorTag > & currentResidualVectorTags() const override
Return the residual vector tags we are currently computing.
processor_id_type rank() const
std::vector< SubdomainName > _material_coverage_blocks
bool computingScalingJacobian() const
Whether we are computing an initial Jacobian for automatic variable scaling.
TODO: delete this later - it is a temporary hack for dealing with inter-system dependencies.
NumericVector< Number > * rhs
void setSteadyStateConvergenceName(const ConvergenceName &convergence_name)
Sets the steady-state detection convergence object name if there is one.
virtual void addAuxScalarVariable(const std::string &var_name, libMesh::Order order, Real scale_factor=1., const std::set< SubdomainID > *const active_subdomains=NULL)
virtual const SystemBase & systemBaseLinear(unsigned int sys_num) const override
Get a constant base class reference to a linear system.
const Parallel::Communicator & comm() const
void logAdd(const std::string &system, const std::string &name, const std::string &type, const InputParameters ¶ms) const
Output information about the object just added to the problem.
virtual bool hasScalarVariable(const std::string &var_name) const override
Returns a Boolean indicating whether any system contains a variable with the name provided...
void setSolution(const NumericVector< Number > &soln)
Set the solution to a given vector.
MultiApp Implementation for Transient Apps.
Solving a linear problem.
void resizeMaterialData(Moose::MaterialDataType data_type, unsigned int nqp, const THREAD_ID tid)
Resize material data.
void finishMultiAppStep(ExecFlagType type, bool recurse_through_multiapp_levels=false)
Finish the MultiApp time step (endStep, postStep) associated with the ExecFlagType.
virtual void addFunctorMaterial(const std::string &functor_material_name, const std::string &name, InputParameters ¶meters)
virtual void timestepSetup(THREAD_ID tid=0) const
std::vector< VariableSecond > _second_zero
void clean_refinement_flags()
std::map< SolverVariableName, unsigned int > _solver_var_to_sys_num
Map connecting variable names with their respective solver systems.
virtual std::unique_ptr< NumericVector< T > > clone() const=0
std::vector< MooseArray< ADReal > > _ad_zero
void customSetup(const ExecFlagType &exec_type)
Calls the setup function for each of the output objects.
virtual bool hasMatrix(TagID tag) const
Check if the tagged matrix exists in the system.
bool _requires_nonlocal_coupling
nonlocal coupling requirement flag
virtual void onTimestepEnd() override
virtual void computeNearNullSpace(libMesh::NonlinearImplicitSystem &sys, std::vector< NumericVector< libMesh::Number > *> &sp)
virtual void addNodalKernel(const std::string &kernel_name, const std::string &name, InputParameters ¶meters)
std::vector< std::shared_ptr< SolverSystem > > _solver_systems
Combined container to base pointer of every solver system.
MaterialData & getMaterialData(Moose::MaterialDataType type, const THREAD_ID tid=0) const
All Distributions should inherit from this class.
void setCurrentDirection(const int direction)
Set this Transfer to be executed in a given direction.
std::unique_ptr< T_DEST, T_DELETER > dynamic_pointer_cast(std::unique_ptr< T_SRC, T_DELETER > &src)
These are reworked from https://stackoverflow.com/a/11003103.
ConstElemPointerRange * refinedElementRange() const
Return a range that is suitable for threaded execution over elements that were just refined...
std::vector< VectorVariableCurl > _vector_curl_zero
static void selectVectorTagsFromSystem(const SystemBase &system, const std::vector< VectorTag > &input_vector_tags, std::set< TagID > &selected_tags)
Select the vector tags which belong to a specific system.
Base class for user objects executed one or more sidesets, which may be on the outer boundary of the ...
bool _has_exception
Whether or not an exception has occurred.
unsigned int _num_grid_steps
Number of steps in a grid sequence.
virtual void associateMatrixToTag(libMesh::SparseMatrix< Number > &matrix, TagID tag)
Associate a matrix to a tag.
bool haveXFEM()
Find out whether the current analysis is using XFEM.
virtual void addJacobianBlockTags(libMesh::SparseMatrix< libMesh::Number > &jacobian, unsigned int ivar, unsigned int jvar, const DofMap &dof_map, std::vector< dof_id_type > &dof_indices, const std::set< TagID > &tags, const THREAD_ID tid)
void registerRandomInterface(RandomInterface &random_interface, const std::string &name)
bool _has_time_integrator
Indicates whether or not this executioner has a time integrator (during setup)
This class provides an interface for common operations on field variables of both FE and FV types wit...
const Parallel::Communicator & _communicator
virtual void addAuxKernel(const std::string &kernel_name, const std::string &name, InputParameters ¶meters)
virtual void jacobianSetup()
void clearActiveMaterialProperties(const THREAD_ID tid)
Clear the active material properties.
virtual unsigned int nLinearIterations(const unsigned int nl_sys_num) const override
bool has_static_condensation() const
std::vector< subdomain_id_type > getSubdomainIDs(const libMesh::MeshBase &mesh, const std::vector< SubdomainName > &subdomain_name)
Get the associated subdomainIDs for the subdomain names that are passed in.
ExecuteMooseObjectWarehouse< TransientMultiApp > _transient_multi_apps
Storage for TransientMultiApps (only needed for calling 'computeDT')
bool hasUserObject(const std::string &name) const
Check if there if a user object of given name.
MaterialWarehouse _interface_materials
Real getStartTime() const
Thread to compute threaded general user objects.
The following methods are specializations for using the libMesh::Parallel::packed_range_* routines fo...
bool _ignore_zeros_in_jacobian
Whether to ignore zeros in the Jacobian, thereby leading to a reduced sparsity pattern.
const libMesh::ConstElemRange & getCurrentAlgebraicElementRange()
These are the element and nodes that contribute to the jacobian and residual for this local processor...
void setup(const ExecFlagType &exec_flag, THREAD_ID tid=0) const
void setCurrentExecuteOnFlag(const ExecFlagType &)
virtual void computeResidualInternal(const NumericVector< libMesh::Number > &soln, NumericVector< libMesh::Number > &residual, const std::set< TagID > &tags)
Form a residual vector for a set of tags.
void copyValuesBack()
Copies current chain control data values into old values.
void initElementStatefulProps(const libMesh::ConstElemRange &elem_range, const bool threaded)
Initialize stateful properties for elements in a specific elem_range This is needed when elements/bou...
const libMesh::ConstNodeRange & getCurrentAlgebraicNodeRange()
void setCurrentlyComputingResidualAndJacobian(bool currently_computing_residual_and_jacobian)
Set whether or not the problem is in the process of computing the Jacobian.
ExecuteMooseObjectWarehouse< Transfer > _from_multi_app_transfers
Transfers executed just after MultiApps to transfer data from them.
virtual void addKernel(const std::string &kernel_name, const std::string &name, InputParameters ¶meters)
libMesh::TensorValue< ADReal > ADRealTensorValue
Base class for a system (of equations)
const ExecFlagType EXEC_ALWAYS
SparseMatrix< Number > & getSystemMatrix()
Fetching the system matrix from the libmesh system.
This user object allows related evaluations on elements, boundaries, internal sides, interfaces in one single place.
virtual void addAuxVariable(const std::string &var_type, const std::string &var_name, InputParameters ¶ms)
Canonical method for adding an auxiliary variable.
std::pair< typename M::iterator, bool > moose_try_emplace(M &m, const typename M::key_type &k, Args &&... args)
Function to mirror the behavior of the C++17 std::map::try_emplace() method (no hint).
const T_sys & get_system(std::string_view name) const
std::optional< ConvergenceName > _steady_state_convergence_name
Steady-state detection convergence name.
Base class for MeshDivision objects.
bool computingNonlinearResid() const
Returns true if the problem is in the process of computing the nonlinear residual.
virtual void addFVInterfaceKernel(const std::string &fv_ik_name, const std::string &name, InputParameters ¶meters)
MeshDivision & getMeshDivision(const std::string &name, const THREAD_ID tid=0) const
Get a MeshDivision.
bool isRestarting() const
Whether or not this is a "restart" calculation.
Base class for creating new nodally-based mortar user objects.
Reporter objects allow for the declaration of arbitrary data types that are aggregate values for a si...
const Positions & getPositionsObject(const std::string &name) const
Get the Positions object by its name.
libMesh::ConstNodeRange * getLocalNodeRange()
std::map< SolverSystemName, unsigned int > _solver_sys_name_to_num
Map connecting solver system names with their respective systems.
FEProblemBase(const InputParameters ¶meters)
void addEdge(const T &a, const T &b)
Add an edge between nodes 'a' and 'b'.
std::string convertLatestCheckpoint(std::string orig)
Replaces "LATEST" placeholders with the latest checkpoint file name.
bool isOn()
Is adaptivity on?
void computeResidualTags(const std::set< TagID > &tags)
Form multiple tag-associated residual vectors for all the given tags.
virtual void cacheJacobianNeighbor(const THREAD_ID tid) override
Specialization of SubProblem for solving nonlinear equations plus auxiliary equations.
virtual void clearActiveElementalMooseVariables(const THREAD_ID tid)
Clear the active elemental MooseVariableFieldBase.
std::vector< std::unordered_map< BoundaryID, bool > > _bnd_mat_side_cache
Cache for calculating materials on side.
bool hasLinearConvergenceObjects() const
Whether we have linear convergence objects.
virtual const Node & nodeRef(const dof_id_type i) const
std::set< dof_id_type > _ghosted_elems
Elements that should have Dofs ghosted to the local processor.
ExecFlagEnum _print_execution_on
When to print the execution of loops.
std::vector< SubdomainID > getSubdomainIDs(const std::vector< SubdomainName > &subdomain_names) const
Get the associated subdomainIDs for the subdomain names that are passed in.
void clearAllDofIndices()
Clear dof indices from variables in nl and aux systems.
virtual void setResidual(NumericVector< libMesh::Number > &residual, const THREAD_ID tid) override
virtual void solve(const unsigned int nl_sys_num)
virtual void setCurrentLowerDElem(const Elem *const lower_d_elem, const THREAD_ID tid) override
Set the current lower dimensional element.
std::set< TagID > _linear_matrix_tags
Temporary storage for filtered matrix tags for linear systems.
MooseApp & getMooseApp() const
Get the MooseApp this class is associated with.
void bumpAllQRuleOrder(libMesh::Order order, SubdomainID block)
Real computeMultiAppsDT(ExecFlagType type)
Find the smallest timestep over all MultiApps.
const std::string & getSubdomainName(SubdomainID subdomain_id) const
Return the name of a block given an id.
virtual void reinitNeighborFaceRef(const Elem *neighbor_elem, unsigned int neighbor_side, Real tolerance, const std::vector< Point > *const pts, const std::vector< Real > *const weights=nullptr, const THREAD_ID tid=0)
reinitialize FE objects on a given neighbor element on a given side at a given set of reference point...
virtual const MooseVariableFieldBase & getVariable(const THREAD_ID tid, const std::string &var_name, Moose::VarKindType expected_var_type=Moose::VarKindType::VAR_ANY, Moose::VarFieldType expected_var_field_type=Moose::VarFieldType::VAR_FIELD_ANY) const override
Returns the variable reference for requested variable which must be of the expected_var_type (Nonline...
void reinitMaterialsFace(SubdomainID blk_id, const THREAD_ID tid, bool swap_stateful=true, const std::deque< MaterialBase *> *reinit_mats=nullptr)
reinit materials on element faces
std::unique_ptr< libMesh::ConstElemRange > _nl_evaluable_local_elem_range
virtual void disassociateMatrixFromTag(libMesh::SparseMatrix< Number > &matrix, TagID tag)
Disassociate a matrix from a tag.
Scope guard for starting and stopping Floating Point Exception Trapping.
virtual void computeResidualTags(const std::set< TagID > &tags)
Form multiple residual vectors and each is associated with one tag.
void forceOutput()
Indicates that the next call to outputStep should be forced This is private, users should utilize FEP...
virtual void computeJacobianSys(libMesh::NonlinearImplicitSystem &sys, const NumericVector< libMesh::Number > &soln, libMesh::SparseMatrix< libMesh::Number > &jacobian)
Form a Jacobian matrix.
auto max(const L &left, const R &right)
std::shared_ptr< MultiApp > getMultiApp(const std::string &multi_app_name) const
Get a MultiApp object by name.
ExecuteMooseObjectWarehouse< UserObject > _all_user_objects
virtual void reinitElemNeighborAndLowerD(const Elem *elem, unsigned int side, const THREAD_ID tid) override
bool hasSolverVariable(const std::string &var_name) const
void preparePRefinement()
Prepare DofMap and Assembly classes with our p-refinement information.
AuxGroup
Flag for AuxKernel related execution type.
virtual Elem * queryElemPtr(const dof_id_type i)
virtual void addMarker(const std::string &marker_name, const std::string &name, InputParameters ¶meters)
void updateGhostedElems()
Updates the list of ghosted elements at the start of each time step for the nonlinear iteration patch...
unsigned int subspaceDim(const std::string &prefix) const
Dimension of the subspace spanned by vectors with a given prefix.
elem_info_iterator ownedElemInfoBegin()
Iterators to owned faceInfo objects.
void setCurrentlyComputingJacobian(const bool currently_computing_jacobian)
Set whether or not the problem is in the process of computing the Jacobian.
unsigned int variable_number(std::string_view var) const
const std::unordered_map< std::pair< BoundaryID, BoundaryID >, AutomaticMortarGeneration > & getMortarInterfaces(bool on_displaced) const
Return all automatic mortar generation objects on either the displaced or undisplaced mesh...
A ReporterName that represents a VectorPostprocessor.
bool needsPreviousNewtonIteration() const
Check to see whether we need to compute the variable values of the previous Newton iterate...
virtual void addBoundaryCondition(const std::string &bc_name, const std::string &name, InputParameters ¶meters)
bool _computing_nonlinear_residual
Whether the non-linear residual is being evaluated.
virtual bool computingPreSMOResidual(const unsigned int nl_sys_num) const override
Returns true if the problem is in the process of computing it's initial residual. ...
void update()
Update the system (doing libMesh magic)
This class is a container/interface for the objects involved in automatic generation of mortar spaces...
virtual Assembly & assembly(const THREAD_ID tid, const unsigned int sys_num) override
void createTagMatrices(CreateTaggedMatrixKey)
const bool _skip_nl_system_check
virtual void resetState()
Reset state of this object in preparation for the next evaluation.
void jacobianSetup()
Calls the jacobianSetup function for each of the output objects.
virtual void addInitialCondition(const std::string &ic_name, const std::string &name, InputParameters ¶meters)
virtual void addCachedResidualDirectly(NumericVector< libMesh::Number > &residual, const THREAD_ID tid)
Allows for all the residual contributions that are currently cached to be added directly into the vec...
bool hasObjects() const
Returns whether we have any active AutomaticMortarGeneration objects.
bool hasActiveBoundaryObjects(THREAD_ID tid=0) const
virtual void jacobianSetup(THREAD_ID tid=0) const
const SubdomainID INVALID_BLOCK_ID
ScalarInitialConditionWarehouse _scalar_ics
virtual void computeLinearSystemSys(libMesh::LinearImplicitSystem &sys, libMesh::SparseMatrix< libMesh::Number > &system_matrix, NumericVector< libMesh::Number > &rhs, const bool compute_gradients=true)
Assemble both the right hand side and the system matrix of a given linear system. ...
Nonlinear system to be solved.
bool getExodusFileRestart() const
Whether or not we need to use a separate Exodus reader to read the mesh BEFORE we create the mesh...
virtual void swapBackMaterialsFace(const THREAD_ID tid)
virtual void addDistribution(const std::string &type, const std::string &name, InputParameters ¶meters)
The following functions will enable MOOSE to have the capability to import distributions.
virtual void advanceState()
Advance all of the state holding vectors / datastructures so that we can move to the next timestep...
A user object that runs over all the nodes and does an aggregation step to compute a single value...
ExecuteMooseObjectWarehouse< Transfer > _transfers
Normal Transfers.
virtual void customSetup(const ExecFlagType &exec_type)
virtual void checkBoundaryMatProps()
Checks boundary material properties integrity.
std::map< std::string, std::vector< dof_id_type > > _var_dof_map
Based class for output objects.
const VectorPostprocessorValue & getVectorPostprocessorValueByName(const std::string &object_name, const std::string &vector_name, std::size_t t_index=0) const
Get a read-only reference to the vector value associated with the VectorPostprocessor.
virtual void addPredictor(const std::string &type, const std::string &name, InputParameters ¶meters)
virtual Function & getFunction(const std::string &name, const THREAD_ID tid=0)
virtual void computeJacobianBlocks(std::vector< JacobianBlock *> &blocks, const unsigned int nl_sys_num)
Computes several Jacobian blocks simultaneously, summing their contributions into smaller preconditio...
virtual void copySolutionsBackwards()
const ConstBndNodeRange & getCurrentAlgebraicBndNodeRange()
bool _calculate_jacobian_in_uo
TODO: delete this later - it is a temporary hack for dealing with inter-system dependencies.
virtual void reinitElemFaceRef(const Elem *elem, unsigned int side, Real tolerance, const std::vector< Point > *const pts, const std::vector< Real > *const weights=nullptr, const THREAD_ID tid=0) override
reinitialize FE objects on a given element on a given side at a given set of reference points and the...
virtual void setActiveScalarVariableCoupleableVectorTags(std::set< TagID > &vtags, const THREAD_ID tid)
virtual void prepareFaceShapes(unsigned int var, const THREAD_ID tid) override
virtual void addPostprocessor(const std::string &pp_name, const std::string &name, InputParameters ¶meters)
virtual Real finalNonlinearResidual(const unsigned int nl_sys_num) const override
void addItem(const T &value)
Add an independent item to the set.
std::vector< std::shared_ptr< NonlinearSystemBase > > _nl
The nonlinear systems.
bool automaticScaling() const
Automatic scaling getter.
virtual void computeUserObjects(const ExecFlagType &type, const Moose::AuxGroup &group)
Call compute methods on UserObjects.
virtual void setActiveElementalMooseVariables(const std::set< MooseVariableFEBase *> &moose_vars, const THREAD_ID tid) override
Set the MOOSE variables to be reinited on each element.
virtual void reinit_systems()
std::map< std::pair< BoundaryID, BoundaryID >, NearestNodeLocator * > _nearest_node_locators
std::vector< VariablePhiGradient > _grad_phi_zero
void initialSetup(THREAD_ID tid)
Initial setup.
bool hasJacobian() const
Returns _has_jacobian.
void notifyWhenMeshDisplaces(MeshDisplacedInterface *mdi)
Register an object that derives from MeshDisplacedInterface to be notified when the displaced mesh ge...
void createTagSolutions()
Create extra tagged solution vectors.
std::vector< SolverSystemName > _solver_sys_names
The union of nonlinear and linear system names.
virtual void execute(const ExecFlagType &exec_type)
Convenience function for performing execution of MOOSE systems.
bool _verbose_restore
Whether or not to be verbose on solution restoration post a failed time step.
bool _previous_nl_solution_required
Indicates we need to save the previous NL iteration variable values.
processor_id_type n_processors() const
bool _trust_user_coupling_matrix
Whether to trust the user coupling matrix no matter what.
void setRestartRecoverFileBase(const std::string &file_base)
mutator for recover_base (set by RecoverBaseAction)
unsigned int number() const
const ConvergenceName & getSteadyStateConvergenceName() const
Gets the steady-state detection convergence object name.
void computeResidualAndJacobianTags(const std::set< TagID > &vector_tags, const std::set< TagID > &matrix_tags)
Form possibly multiple tag-associated vectors and matrices.
void handleException(const std::string &calling_method)
Handle exceptions.
virtual std::vector< VariableName > getVariableNames()
Returns a list of all the variables in the problem (both from the NL and Aux systems.
ReporterData _reporter_data
const std::string & name() const
Get the name of the class.
void uniformRefine()
uniformly refine the problem mesh(es).
virtual void computeResidualSys(libMesh::NonlinearImplicitSystem &sys, const NumericVector< libMesh::Number > &soln, NumericVector< libMesh::Number > &residual)
This function is called by Libmesh to form a residual.
const ReporterData & getReporterData() const
Provides const access the ReporterData object.
virtual const libMesh::CouplingMatrix & nonlocalCouplingMatrix(const unsigned i) const override
std::unique_ptr< libMesh::ConstElemRange > _current_algebraic_elem_range
FunctorMaterials compute functor material properties.
std::vector< std::shared_ptr< Transfer > > getTransfers(ExecFlagType type, Transfer::DIRECTION direction) const
Get Transfers by ExecFlagType and direction.
virtual void addConvergence(const std::string &type, const std::string &name, InputParameters ¶meters)
Adds a Convergence object.
MultiPointMap & getPoints()
Returns a writeable reference to the _points container.
bool shouldPrintExecution(const THREAD_ID tid) const
Check whether the problem should output execution orders at this time.
const std::vector< std::shared_ptr< T > > & getActiveObjects(THREAD_ID tid=0) const
Retrieve complete vector to the active all/block/boundary restricted objects for a given thread...
const std::set< subdomain_id_type > & active_subdomains() const
bool havePRefinement() const
Query whether p-refinement has been requested at any point during the simulation. ...
virtual Real l2_norm() const=0
bool getRecomputeMarkersFlag() const
Pull out the _recompute_markers_during_cycles flag previously set through the AdaptivityAction.
const bool & _solve
Whether or not to actually solve the nonlinear system.
virtual const SystemBase & systemBaseSolver(const unsigned int sys_num) const override
Return the solver system object as a base class reference given the system number.
DenseVector< Real > getAllRealReporterValues() const
Get all real reporter values including postprocessor and vector postprocessor values into a dense vec...
ExecuteMooseObjectWarehouse< Transfer > _to_multi_app_transfers
Transfers executed just before MultiApps to transfer data to them.
std::set< SubdomainID > getActiveBlocks(THREAD_ID tid=0) const
Return a set of active SubdomainsIDs.
NonlinearSystemBase * _current_nl_sys
The current nonlinear system that we are solving.
MooseObjectWarehouse< Convergence > _convergences
convergence warehouse
Interface for notifications that the mesh has changed.
virtual std::unique_ptr< Base > create()=0
void createMortarInterface(const std::pair< BoundaryID, BoundaryID > &boundary_key, const std::pair< SubdomainID, SubdomainID > &subdomain_key, SubProblem &subproblem, bool on_displaced, bool periodic, const bool debug, const bool correct_edge_dropping, const Real minimum_projection_angle)
Create mortar generation object.
void setCurrentNonlinearSystem(const unsigned int nl_sys_num)
std::shared_ptr< T > getActiveObject(const std::string &name, THREAD_ID tid=0) const
const std::vector< std::shared_ptr< T > > & getObjects(THREAD_ID tid=0) const
Retrieve complete vector to the all/block/boundary restricted objects for a given thread...
virtual const NumericVector< Number > *const & currentSolution() const override final
The solution vector that is currently being operated on.
void initialSetup()
Initial setup.
Real value(unsigned n, unsigned alpha, unsigned beta, Real x)
Base class for convergence criteria.
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
void min(const T &r, T &o, Request &req) const
virtual void reinitElem(const Elem *elem, const THREAD_ID tid) override
bool needSubdomainMaterialOnSide(SubdomainID subdomain_id, const THREAD_ID tid)
const T & getReporterValue(const ReporterName &reporter_name, const MooseObject &consumer, const ReporterMode &mode, const std::size_t time_index=0) const
Method for returning read only references to Reporter values.
virtual Convergence & getConvergence(const std::string &name, const THREAD_ID tid=0) const
Gets a Convergence object.
TheWarehouse & theWarehouse() const
void createTagVectors()
Create extra tagged vectors and matrices.
virtual void createQRules(libMesh::QuadratureType type, libMesh::Order order, libMesh::Order volume_order=libMesh::INVALID_ORDER, libMesh::Order face_order=libMesh::INVALID_ORDER, SubdomainID block=Moose::ANY_BLOCK_ID, bool allow_negative_qweights=true)
void reinitMaterialsNeighbor(SubdomainID blk_id, const THREAD_ID tid, bool swap_stateful=true, const std::deque< MaterialBase *> *reinit_mats=nullptr)
reinit materials on the neighboring element face
void setMultiAppFixedPointConvergenceName(const ConvergenceName &convergence_name)
Sets the MultiApp fixed point convergence object name if there is one.
Moose::CouplingType _coupling
Type of variable coupling.
Every object that can be built by the factory should be derived from this class.
void parallelBarrierNotify(const libMesh::Parallel::Communicator &comm, bool messaging=true)
This function implements a parallel barrier function but writes progress to stdout.
virtual bool shouldUpdateSolution()
Check to see whether the problem should update the solution.
virtual void setActiveFEVariableCoupleableVectorTags(std::set< TagID > &vtags, const THREAD_ID tid)
void extraSendList(std::vector< dof_id_type > &send_list, void *context)
///< Type of coordinate system
void mooseDeprecated(Args &&... args) const
void addObjects(std::shared_ptr< MaterialBase > block, std::shared_ptr< MaterialBase > neighbor, std::shared_ptr< MaterialBase > face, THREAD_ID tid=0)
A special method unique to this class for adding Block, Neighbor, and Face material objects...
const ConvergenceName & getMultiAppFixedPointConvergenceName() const
Gets the MultiApp fixed point convergence object name.
std::vector< std::string > getAllRealReporterFullNames() const
Get full names of all real reporter values Note: For a postprocessor, the full name is the postproces...
virtual void clearActiveScalarVariableCoupleableVectorTags(const THREAD_ID tid)
Real getTimeFromStateArg(const Moose::StateArg &state) const
Returns the time associated with the requested state.
virtual std::string solverTypeString(unsigned int solver_sys_num=0)
Return solver type as a human readable string.
const ExecFlagType EXEC_TIMESTEP_BEGIN
std::shared_ptr< T > getObject(const std::string &name, THREAD_ID tid=0) const
void executeSamplers(const ExecFlagType &exec_type)
Performs setup and execute calls for Sampler objects.
unsigned int which_neighbor_am_i(const Elem *e) const
virtual void computeJacobianInternal(const NumericVector< libMesh::Number > &soln, libMesh::SparseMatrix< libMesh::Number > &jacobian, const std::set< TagID > &tags)
Form a Jacobian matrix for multiple tags.
bool _safe_access_tagged_vectors
Is it safe to retrieve data from tagged vectors.
virtual void computeJacobian(const NumericVector< libMesh::Number > &soln, libMesh::SparseMatrix< libMesh::Number > &jacobian, const unsigned int nl_sys_num)
Form a Jacobian matrix with the default tag (system).
std::optional< std::string > queryStatefulPropName(const unsigned int id) const
void addOutput(const std::string &, const std::string &, InputParameters &)
Adds an Output object.
SolutionIterationType iteration_type
The solution iteration type, e.g. time or nonlinear.
boundary_id_type BoundaryID
void boundaryIntegrityCheckError(const MooseObject &object, const std::set< MooseVariableFieldBase *> &variables, const BoundaryName &boundary_name)
Compose boundary restricted error message for the provided object, variables, and boundary_name if th...
const bool _allow_ics_during_restart
bool constJacobian() const
Returns _const_jacobian (whether a MOOSE object has specified that the Jacobian is the same as the pr...
virtual void clearActiveFEVariableCoupleableMatrixTags(const THREAD_ID tid) override
void computeJacobianTags(const std::set< TagID > &tags)
Computes multiple (tag associated) Jacobian matricese.
SolutionInvalidity & solutionInvalidity()
Get the SolutionInvalidity for this app.
std::vector< MeshChangedInterface * > _notify_when_mesh_changes
Objects to be notified when the mesh changes.
virtual void timestepSetup(THREAD_ID tid=0) const
void checkNonlocalCoupling()
VarKindType
Framework-wide stuff.
void addDefaultSteadyStateConvergence(const InputParameters ¶ms)
Adds the default steady-state detection Convergence.
NonlinearSystemBase & currentNonlinearSystem()
SimpleRange< IndexType > as_range(const std::pair< IndexType, IndexType > &p)
Jacobian-Free Newton Krylov.
void groupUserObjects(TheWarehouse &w, AuxiliarySystem &aux, const ExecFlagEnum &execute_flags, const std::vector< T *> &objs, const std::set< std::string > &ic_deps)
void checkDisplacementOrders()
Verify that SECOND order mesh uses SECOND order displacements.
virtual void addFunction(const std::string &type, const std::string &name, InputParameters ¶meters)
Real PostprocessorValue
various MOOSE typedefs
void uniformly_coarsen(unsigned int n=1)
virtual void addJacobianNeighbor(const THREAD_ID tid) override
virtual TagID addMatrixTag(TagName tag_name)
Create a Tag.
virtual libMesh::EquationSystems & es() override
std::vector< std::unordered_map< SubdomainID, bool > > _block_mat_side_cache
Cache for calculating materials on side.
std::shared_ptr< AuxiliarySystem > _aux
The auxiliary system.
void setRestart(bool value)
Sets the restart/recover flags.
AttribBoundaries tracks all boundary IDs associated with an object.
void setValue(unsigned int i, Number value)
Set the nodal value for this variable (to keep everything up to date.
virtual void reinitElemFaceRef(const Elem *elem, unsigned int side, Real tolerance, const std::vector< Point > *const pts, const std::vector< Real > *const weights=nullptr, const THREAD_ID tid=0)
reinitialize FE objects on a given element on a given side at a given set of reference points and the...
virtual void addVectorPostprocessor(const std::string &pp_name, const std::string &name, InputParameters ¶meters)
MooseMesh wraps a libMesh::Mesh object and enhances its capabilities by caching additional data and s...
virtual bool converged(const unsigned int sys_num)
Eventually we want to convert this virtual over to taking a solver system number argument.
virtual unsigned int currentNlSysNum() const override
virtual void computeIndicators()
virtual MooseVariableScalar & getScalarVariable(const THREAD_ID tid, const std::string &var_name) override
Returns the scalar variable reference from whichever system contains it.
const bool _boundary_restricted_node_integrity_check
whether to perform checking of boundary restricted nodal object variable dependencies, e.g.
virtual void setActiveScalarVariableCoupleableVectorTags(std::set< TagID > &vtags, const THREAD_ID tid) override
virtual void updateActive(THREAD_ID tid=0)
Update the active status of Kernels.
virtual bool updateMeshXFEM()
Update the mesh due to changing XFEM cuts.
virtual const SystemBase & systemBaseNonlinear(const unsigned int sys_num) const override
Return the nonlinear system object as a base class reference given the system number.
std::vector< MortarUserObject * > getMortarUserObjects(BoundaryID primary_boundary_id, BoundaryID secondary_boundary_id, bool displaced, const std::vector< MortarUserObject *> &mortar_uo_superset)
Helper for getting mortar objects corresponding to primary boundary ID, secondary boundary ID...
virtual void restoreSolutions()
virtual bool hasConvergence(const std::string &name, const THREAD_ID tid=0) const
Returns true if the problem has a Convergence object of the given name.
void markFamilyPRefinement(const InputParameters ¶ms)
Mark a variable family for either disabling or enabling p-refinement with valid parameters of a varia...
virtual const std::vector< dof_id_type > & dofIndices() const
Get local DoF indices.
void addAnyRedistributers()
const std::string & type() const
Get the type of this class.
bool hasPostprocessorValueByName(const PostprocessorName &name) const
Whether or not a Postprocessor value exists by a given name.
virtual void checkBlockMatProps()
Checks block material properties integrity.
void restoreFromInitialBackup(const bool for_restart)
Restores from a "initial" backup, that is, one set in _initial_backup.
void setAxisymmetricCoordAxis(const MooseEnum &rz_coord_axis)
void initialSetup() override
This is a "smart" enum class intended to replace many of the shortcomings in the C++ enum type It sho...
void reinit()
Completely redo all geometric search objects.
std::vector< VectorTag > getVectorTags(const std::set< TagID > &tag_ids) const
bool allowInvalidSolution() const
Whether to accept / allow an invalid solution.
virtual const SystemBase & systemBaseAuxiliary() const override
Return the auxiliary system object as a base class reference.
void setLinearConvergenceNames(const std::vector< ConvergenceName > &convergence_names)
Sets the linear convergence object name(s) if there is one.
void checkUserObjectJacobianRequirement(THREAD_ID tid)
MooseVariableFieldBase & getActualFieldVariable(const THREAD_ID tid, const std::string &var_name) override
Returns the variable reference for requested MooseVariableField which may be in any system...
void finalize(const std::string &object_name)
Helper function for performing post calculation actions via the ReporterContext objects.
void addObject(std::shared_ptr< InitialConditionBase > object, THREAD_ID tid, bool recurse=true)
Add object to the warehouse.
virtual void disassociateVectorFromTag(NumericVector< Number > &vec, TagID tag)
Disassociate a given vector from a given tag.
virtual void computeNullSpace(libMesh::NonlinearImplicitSystem &sys, std::vector< NumericVector< libMesh::Number > *> &sp)
virtual void addTimeIntegrator(const std::string &type, const std::string &name, InputParameters ¶meters)
LinearSystem * _current_linear_sys
The current linear system that we are solving.
virtual void cacheResidual(const THREAD_ID tid) override
virtual void computeResidualType(const NumericVector< libMesh::Number > &soln, NumericVector< libMesh::Number > &residual, TagID tag)
Form a residual vector for a given tag and "residual" tag.
const bool _force_restart
void checkCoordinateSystems()
Performs a sanity check for every element in the mesh.
QueryCache clone() const
clone creates and returns an independent copy of the query in its current state.
const std::set< SubdomainID > & getMortarSubdomainIDs() const
Returns the mortar covered subdomains.
void forceOutput()
Indicates that the next call to outputStep should be forced.
const VectorPostprocessor & getVectorPostprocessorObjectByName(const std::string &object_name, const THREAD_ID tid=0) const
Return the VPP object given the name.
std::vector< VariablePhiSecond > _second_phi_zero
StoredRange< std::vector< GeneralUserObject * >::iterator, GeneralUserObject * > GeneralUserObjectRange
bool _started_initial_setup
At or beyond initialSteup stage.
std::map< std::string, std::unique_ptr< RandomData > > _random_data_objects
A map of objects that consume random numbers.
virtual bool vectorTagExists(const TagID tag_id) const
Check to see if a particular Tag exists.
std::unique_ptr< ConstBndNodeRange > _current_algebraic_bnd_node_range
virtual void addResidual(const THREAD_ID tid) override
virtual void addResidualNeighbor(const THREAD_ID tid) override
virtual void reinitNeighborFaceRef(const Elem *neighbor_elem, unsigned int neighbor_side, Real tolerance, const std::vector< Point > *const pts, const std::vector< Real > *const weights=nullptr, const THREAD_ID tid=0) override
reinitialize FE objects on a given neighbor element on a given side at a given set of reference point...
void setCoordSystem(const std::vector< SubdomainName > &blocks, const MultiMooseEnum &coord_sys)
Set the coordinate system for the provided blocks to coord_sys.
Base class for all Postprocessors.
libMesh::ExodusII_IO * getExReaderForRestart() const
Get the Exodus reader to restart variables from an Exodus mesh file.
void needSolutionState(unsigned int oldest_needed, Moose::SolutionIterationType iteration_type)
Declare that we need up to old (1) or older (2) solution states for a given type of iteration...
void clearPoints()
Remove all of the current points and elements.
std::string typeAndName() const
Get the class's combined type and name; useful in error handling.
MooseApp & _app
The MOOSE application this is associated with.
virtual void clearActiveFEVariableCoupleableVectorTags(const THREAD_ID tid) override
void maxloc(T &r, unsigned int &max_id) const
bool isValueSet(const std::string &value) const
Methods for seeing if a value is set in the MultiMooseEnum.
void setCouplingMatrix(std::unique_ptr< libMesh::CouplingMatrix > cm, const unsigned int nl_sys_num)
Set custom coupling matrix.
unsigned int number() const
Gets the number of this system.
virtual void addDefaultNonlinearConvergence(const InputParameters ¶ms)
Adds the default nonlinear Convergence associated with the problem.
virtual void solve() override
Solve the system (using libMesh magic)
void setNonlinearConvergenceNames(const std::vector< ConvergenceName > &convergence_names)
Sets the nonlinear convergence object name(s) if there is one.
unsigned int uniformRefineLevel() const
Returns the level of uniform refinement requested (zero if AMR is disabled).
const ExecFlagType EXEC_LINEAR
TODO: delete this later - it is a temporary hack for dealing with inter-system dependencies.
virtual bool solverSystemConverged(const unsigned int solver_sys_num) override
std::string stringify(const T &t)
conversion to string
std::string _exception_message
The error message to go with an exception.
const std::set< SubdomainID > & boundaryLowerDBlocks() const
std::vector< SubdomainName > getSubdomainNames(const std::vector< SubdomainID > &subdomain_ids) const
Get the associated subdomainNames for the subdomain ids that are passed in.
virtual void checkProblemIntegrity()
Method called to perform a series of sanity checks before a simulation is run.
void setReporterValue(const ReporterName &reporter_name, const T &value, const std::size_t time_index=0)
Method for setting Reporter values that already exist.
Class for storing and utilizing output objects.
AuxiliarySystem & getAuxiliarySystem()
virtual void initialSetup(THREAD_ID tid=0) const
Convenience methods for calling object setup methods.
virtual void updateGeomSearch(GeometricSearchData::GeometricSearchType type=GeometricSearchData::ALL) override
void petscSetOptions(const PetscOptions &po, const SolverParams &solver_params, FEProblemBase *const problem=nullptr)
A function for setting the PETSc options in PETSc from the options supplied to MOOSE.
MooseObjectWarehouse< MeshDivision > _mesh_divisions
Warehouse to store mesh divisions NOTE: this could probably be moved to the MooseMesh instead of the ...
virtual void addConstraint(const std::string &c_name, const std::string &name, InputParameters ¶meters)
void buildRefinementAndCoarseningMaps(Assembly *assembly)
Create the refinement and coarsening maps necessary for projection of stateful material properties wh...
MooseObjectWarehouse< Indicator > _indicators
virtual void addMultiApp(const std::string &multi_app_name, const std::string &name, InputParameters ¶meters)
Add a MultiApp to the problem.
virtual void prepareAssembly(const THREAD_ID tid) override
bool haveADObjects() const
Method for reading wehther we have any ad objects.
unsigned int systemNumForVariable(const VariableName &variable_name) const
bool _checking_uo_aux_state
Flag used to indicate whether we are doing the uo/aux state check in execute.
const PostprocessorValue & getPostprocessorValueByName(const PostprocessorName &name, std::size_t t_index=0) const
Get a read-only reference to the value associated with a Postprocessor that exists.
MeshBase::element_iterator activeLocalElementsBegin()
Calls active_local_nodes_begin/end() on the underlying libMesh mesh object.
InitialConditions are objects that set the initial value of variables.
Base class for user objects executed on all element sides internal to one or more blocks...
virtual void clearActiveScalarVariableCoupleableMatrixTags(const THREAD_ID tid)
virtual std::map< TagName, TagID > & getMatrixTags()
Return all matrix tags in the system, where a tag is represented by a map from name to ID...
virtual void initNullSpaceVectors(const InputParameters ¶meters, std::vector< std::shared_ptr< NonlinearSystemBase >> &nl)
virtual bool hasVariable(const std::string &var_name) const
Query a system for a variable.
Executioner * getExecutioner() const
Retrieve the Executioner for this App.
virtual void setCurrentSubdomainID(const Elem *elem, const THREAD_ID tid) override
void broadcast(T &data, const unsigned int root_id=0, const bool identical_sizes=false) const
virtual void clearDiracInfo() override
Gets called before Dirac Kernels are asked to add the points they are supposed to be evaluated in...
virtual void addIndicator(const std::string &indicator_name, const std::string &name, InputParameters ¶meters)
virtual void reinitNodesNeighbor(const std::vector< dof_id_type > &nodes, const THREAD_ID tid) override
bool duplicateVariableCheck(const std::string &var_name, const libMesh::FEType &type, bool is_aux, const std::set< SubdomainID > *const active_subdomains)
Helper to check for duplicate variable names across systems or within a single system.
virtual void solve() override=0
Solve the system (using libMesh magic)
GeometricSearchType
Used to select groups of geometric search objects to update.
void backupMultiApps(ExecFlagType type)
Backup the MultiApps associated with the ExecFlagType.
A ReporterName that represents a Postprocessor.
virtual void addVariable(const std::string &var_type, const std::string &var_name, InputParameters ¶ms)
Canonical method for adding a non-linear variable.
bool doingPRefinement() const
ExecuteMooseObjectWarehouse< MultiApp > _multi_apps
MultiApp Warehouse.
virtual void jacobianSetup(THREAD_ID tid=0) const
void updateBoundaryMatPropDependency(std::unordered_set< unsigned int > &needed_mat_props, THREAD_ID tid=0) const
void uniformRefineWithProjection()
Performs uniform refinement on the meshes in the current object.
TagID residualVectorTag() const override
std::vector< std::vector< std::unique_ptr< Assembly > > > _assembly
The Assembly objects.
virtual void addDisplacedProblem(std::shared_ptr< DisplacedProblem > displaced_problem)
const std::map< BoundaryID, std::vector< std::shared_ptr< T > > > & getActiveBoundaryObjects(THREAD_ID tid=0) const
void computeResidual(libMesh::NonlinearImplicitSystem &sys, const NumericVector< libMesh::Number > &soln, NumericVector< libMesh::Number > &residual)
This function is called by Libmesh to form a residual.
virtual void cacheJacobianNeighbor(const THREAD_ID tid)
void setVectorPostprocessorValueByName(const std::string &object_name, const std::string &vector_name, const VectorPostprocessorValue &value, std::size_t t_index=0)
Set the value of a VectorPostprocessor vector.
virtual MooseVariable & getStandardVariable(const THREAD_ID tid, const std::string &var_name) override
Returns the variable reference for requested MooseVariable which may be in any system.
virtual void initialSetup(THREAD_ID tid=0) const
Convenience methods for calling object setup methods that handle the extra neighbor and face objects...
void setCoordSystem(const std::vector< SubdomainName > &blocks, const MultiMooseEnum &coord_sys)
virtual void swapBackMaterialsNeighbor(const THREAD_ID tid)
virtual void addLinearFVKernel(const std::string &kernel_name, const std::string &name, InputParameters ¶meters)
bool hasStatefulProperties() const
void residualSetup()
Calls the residualSetup function for each of the output objects.
virtual NonlinearSystem & getNonlinearSystem(const unsigned int sys_num)
void solveSetup()
Calls the timestepSetup function for each of the output objects.
void sort(THREAD_ID tid=0)
virtual bool reinitDirac(const Elem *elem, const THREAD_ID tid) override
Returns true if the Problem has Dirac kernels it needs to compute on elem.
MooseAppCoordTransform & coordTransform()
virtual void cacheResidual(const THREAD_ID tid)
virtual void timestepSetup()
libMesh::Order order() const
Get the order of this variable Note: Order enum can be implicitly converted to unsigned int...
const ExecFlagType EXEC_PRE_DISPLACE
virtual const Elem * elem_ptr(const dof_id_type i) const=0
const std::vector< NonlinearSystemName > _nl_sys_names
The nonlinear system names.
const ExecFlagType EXEC_POSTCHECK
PetscErrorCode PetscInt const PetscInt fields[]
const ExecFlagType EXEC_NONLINEAR
std::vector< Real > VectorPostprocessorValue
virtual void updateMortarMesh()
void copyValuesBack()
At the end of a timestep this method is called to copy the values back in time in preparation for the...
void update()
Builds mortar segment meshes for each mortar interface.
const std::vector< const Elem * > & coarsenedElementChildren(const Elem *elem) const
Get the newly removed children element ids for an element that was just coarsened.
void restore(const std::filesystem::path &folder_base, const bool for_restart)
Restore an application from file.
void addDefaultMultiAppFixedPointConvergence(const InputParameters ¶ms)
Adds the default fixed point Convergence associated with the problem.
std::set< TagID > _fe_matrix_tags
virtual NumericVector< Number > & RHS()=0
virtual void addAuxArrayVariable(const std::string &var_name, const libMesh::FEType &type, unsigned int components, const std::set< SubdomainID > *const active_subdomains=NULL)
const ExecuteMooseObjectWarehouse< Transfer > & getMultiAppTransferWarehouse(Transfer::DIRECTION direction) const
Return the complete warehouse for MultiAppTransfer object for the given direction.
virtual const SystemBase & getSystemBase(const unsigned int sys_num) const
Get constant reference to a system in this problem.
const Elem * neighbor_ptr(unsigned int i) const
virtual void reinitLowerDElem(const Elem *lower_d_elem, const THREAD_ID tid, const std::vector< Point > *const pts=nullptr, const std::vector< Real > *const weights=nullptr) override
void removeSubstring(std::string &main, const std::string &sub)
find, erase, length algorithm for removing a substring from a string
Provides a way for users to bail out of the current solve.
virtual void addReporter(const std::string &type, const std::string &name, InputParameters ¶meters)
Add a Reporter object to the simulation.
virtual void swapBackMaterials(const THREAD_ID tid)
std::vector< VariablePhiValue > _phi_zero
InitialConditionWarehouse _ics
std::vector< unsigned char > _has_active_material_properties
Whether there are active material properties on each thread.
MaterialWarehouse _discrete_materials
bool _reinit_displaced_face
Whether to call DisplacedProblem::reinitElemFace when this->reinitElemFace is called.
void updateBlockMatPropDependency(SubdomainID id, std::unordered_set< unsigned int > &needed_mat_props, THREAD_ID tid=0) const
void setSinglePetscOption(const std::string &name, const std::string &value="", FEProblemBase *const problem=nullptr)
A wrapper function for dealing with different versions of PetscOptionsSetValue.
virtual void initialSetup()
NumericVector< Number > & getRightHandSideVector()
Fetching the right hand side vector from the libmesh system.
virtual void addDGKernel(const std::string &kernel_name, const std::string &name, InputParameters ¶meters)
virtual void setCurrentBoundaryID(BoundaryID bid, const THREAD_ID tid) override
sets the current boundary ID in assembly
SolverSystem * _current_solver_sys
The current solver system.
DIE A HORRIBLE DEATH HERE typedef LIBMESH_DEFAULT_SCALAR_TYPE Real
virtual std::shared_ptr< const DisplacedProblem > getDisplacedProblem() const
virtual bool contract()=0
std::optional< std::vector< ConvergenceName > > _nonlinear_convergence_names
Nonlinear system(s) convergence name(s)
Generic class for solving transient nonlinear problems.
virtual void preProblemInit()
Perform initializations during executing actions right before init_problem task.
void updateActiveSemiLocalNodeRange(std::set< dof_id_type > &ghosted_elems)
Clears the "semi-local" node list and rebuilds it.
subdomain_id_type subdomain_id() const
virtual void stopSolve(const ExecFlagType &exec_flag, const std::set< TagID > &vector_tags_to_close)=0
Quit the current solve as soon as possible.
const InputParameters * getCommonParameters() const
Get a reference to the common output parameters.
TagID timeVectorTag() const override
Ideally, we should not need this API.
std::map< SubdomainID, std::set< MaterialPropertyName > > _zero_block_material_props
Set of properties returned as zero properties.
Class for containing MooseEnum item information.
unsigned int solverSysNum(const SolverSystemName &solver_sys_name) const override
std::shared_ptr< MaterialBase > getMaterial(std::string name, Moose::MaterialDataType type, const THREAD_ID tid=0, bool no_warn=false)
Return a pointer to a MaterialBase object.
virtual void swap(NumericVector< T > &v)
bool hasActiveObject(const std::string &name, THREAD_ID tid=0) const
Convenience functions for checking/getting specific objects.
std::vector< VariableGradient > _grad_zero
bool hasActiveObjects(THREAD_ID tid=0) const
void clearCurrentJacobianMatrixTags()
Clear the current Jacobian matrix tag data structure ...
CTSub CT_OPERATOR_BINARY CTMul CTCompareLess CTCompareGreater CTCompareEqual _arg template * sqrt(_arg)) *_arg.template D< dtag >()) CT_SIMPLE_UNARY_FUNCTION(tanh
virtual void subdomainSetup(SubdomainID subdomain, const THREAD_ID tid)
virtual void restoreOldSolutions()
Restore old solutions from the backup vectors and deallocate them.
unsigned int getInitialSteps() const
Pull out the number of initial steps previously set by calling init()
void max(const T &r, T &o, Request &req) const
void reinitMaterials(SubdomainID blk_id, const THREAD_ID tid, bool swap_stateful=true)
virtual unsigned short dim() const=0
const AutomaticMortarGeneration & getMortarInterface(const std::pair< BoundaryID, BoundaryID > &primary_secondary_boundary_pair, const std::pair< SubdomainID, SubdomainID > &primary_secondary_subdomain_pair, bool on_displaced) const
Return the undisplaced or displaced mortar generation object associated with the provided boundaries ...
bool acceptInvalidSolution() const
Whether or not to accept the solution based on its invalidity.
void setLoadAllVectors(const bool load_all_vectors)
Sets whether or not all vectors are to be loaded.
Class for threaded computation of UserObjects.
const bool _restore_original_nonzero_pattern
Whether we should restore the original nonzero pattern for every Jacobian evaluation.
void setRandomDataPointer(RandomData *random_data)
Base class for all MultiAppTransfer objects.
virtual libMesh::SparseMatrix< Number > & getMatrix(TagID tag)
Get a raw SparseMatrix.
void execMultiAppTransfers(ExecFlagType type, Transfer::DIRECTION direction)
Execute MultiAppTransfers associated with execution flag and direction.
T & set(const std::string &)
Wrapper class that owns a libMesh EquationSystem and adds advanced restart capability to it...
void restoreMultiApps(ExecFlagType type, bool force=false)
Restore the MultiApps associated with the ExecFlagType.
virtual void addLinearFVBC(const std::string &fv_bc_name, const std::string &name, InputParameters ¶meters)
virtual bool is_vertex(const unsigned int i) const=0
void subdomainSetup()
Calls the subdomainSetup function for each of the output objects.
const std::vector< dof_id_type > & allDofIndices() const
Get all global dofindices for the variable.
const std::vector< std::string > & get_elem_var_names()
void addMaterialPropertyStorage(MaterialPropertyStorage &mat_props)
Pushes the given pair ( mat_data , mat_props ) onto our list of _materials data to redistribute each ...
SparseMatrix< Number > * matrix
void customSetup(const ExecFlagType &exec_type) override
void setRestartFile(const std::string &file_name)
Communicate to the Resurector the name of the restart filer.
void setCurrentLinearSystem(unsigned int sys_num)
Set the current linear system pointer.
void initNonlocalCoupling()
Create pair of variables requiring nonlocal jacobian contributions.
void executeControls(const ExecFlagType &exec_type)
Performs setup and execute calls for Control objects.
virtual std::vector< std::shared_ptr< UserObject > > addUserObject(const std::string &user_object_name, const std::string &name, InputParameters ¶meters)
Query query()
query creates and returns an initialized a query object for querying objects from the warehouse...
void allowOutput(bool state)
Ability to enable/disable output calls This is private, users should utilize FEProblemBase::allowOutp...
bool hasStartTime() const
virtual void onTimestepBegin() override
virtual void computeBounds(libMesh::NonlinearImplicitSystem &sys, NumericVector< libMesh::Number > &lower, NumericVector< libMesh::Number > &upper)
Nonlinear system to be solved.
virtual void computePostCheck(libMesh::NonlinearImplicitSystem &sys, const NumericVector< libMesh::Number > &old_soln, NumericVector< libMesh::Number > &search_direction, NumericVector< libMesh::Number > &new_soln, bool &changed_search_direction, bool &changed_new_soln)
void checkDuplicatePostprocessorVariableNames()
void setAxisymmetricCoordAxis(const MooseEnum &rz_coord_axis)
For axisymmetric simulations, set the symmetry coordinate axis.
void addOutput(std::shared_ptr< Output > output)
Adds an existing output object to the warehouse.
void computeResidualAndJacobian(const NumericVector< libMesh::Number > &soln, NumericVector< libMesh::Number > &residual, libMesh::SparseMatrix< libMesh::Number > &jacobian)
Form a residual and Jacobian with default tags.
bool hasDisplacedObjects() const
Returns whether any of the AutomaticMortarGeneration objects are running on a displaced mesh...
std::vector< std::pair< MooseVariableFEBase *, MooseVariableFEBase * > > & nonlocalCouplingEntries(const THREAD_ID tid, const unsigned int nl_sys_num)
static void selectMatrixTagsFromSystem(const SystemBase &system, const std::map< TagName, TagID > &input_matrix_tags, std::set< TagID > &selected_tags)
Select the matrix tags which belong to a specific system.
std::vector< VariableValue > _scalar_zero
virtual Real computeResidualL2Norm()
Computes the residual using whatever is sitting in the current solution vector then returns the L2 no...
void update(GeometricSearchType type=ALL)
Update all of the search objects.
const std::vector< LinearSystemName > _linear_sys_names
The linear system names.
void mooseWarning(Args &&... args) const
Emits a warning prefixed with object name and type.
void incrementMultiAppTStep(ExecFlagType type)
Advance the MultiApps t_step (incrementStepOrReject) associated with the ExecFlagType.
Class for scalar variables (they are different).
IntRange< T > make_range(T beg, T end)
void computeLinearSystemTags(const NumericVector< libMesh::Number > &soln, const std::set< TagID > &vector_tags, const std::set< TagID > &matrix_tags, const bool compute_gradients=true)
Assemble the current linear system given a set of vector and matrix tags.
void bumpVolumeQRuleOrder(libMesh::Order order, SubdomainID block)
Increases the element/volume quadrature order for the specified mesh block if and only if the current...
const bool _material_dependency_check
Determines whether a check to verify material dependencies on every subdomain.
std::vector< std::vector< const MooseVariableFEBase * > > _uo_jacobian_moose_vars
virtual MooseMesh & mesh() override
NonlocalKernel is used for solving integral terms in integro-differential equations.
virtual void subdomainSetup(THREAD_ID tid=0) const
std::vector< VariableValue > _zero
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
const ExecFlagType EXEC_SAME_AS_MULTIAPP
unsigned int linearSysNum(const LinearSystemName &linear_sys_name) const override
LinearSystem & currentLinearSystem()
Get a non-constant reference to the current linear system.
virtual void updateActive(THREAD_ID tid=0) override
Update the active status of Kernels.
std::set< TagID > _fe_vector_tags
void addObjectParamsHelper(InputParameters ¶ms, const std::string &object_name, const std::string &var_param_name="variable")
Helper for setting the "_subproblem" and "_sys" parameters in addObject() and in addUserObject().
virtual unsigned int size() const override final
SolverParams & solverParams(unsigned int solver_sys_num=0)
Get the solver parameters.
virtual void saveOldSolutions()
Allocate vectors and save old solutions into them.
std::unique_ptr< NumericVector< Number > > current_local_solution
ADRealVectorValue ADRealGradient
virtual void setActiveFEVariableCoupleableMatrixTags(std::set< TagID > &mtags, const THREAD_ID tid)
void mooseConsole()
Send current output buffer to Console output objects.
std::set< std::string > getDependObjects() const
Get a list of dependent UserObjects for this exec type.
virtual void computeTransposeNullSpace(libMesh::NonlinearImplicitSystem &sys, std::vector< NumericVector< libMesh::Number > *> &sp)
bool hasPostprocessor(const std::string &name) const
Deprecated.
virtual bool updateSolution(NumericVector< libMesh::Number > &vec_solution, NumericVector< libMesh::Number > &ghosted_solution)
Update the solution.
ChainControlDataSystem & getChainControlDataSystem()
Gets the system that manages the ChainControls.
std::shared_ptr< DisplacedProblem > _displaced_problem
GeometricSearchData _geometric_search_data
State argument for evaluating functors.
void setCurrentResidualVectorTags(const std::set< TagID > &vector_tags)
Set the current residual vector tag data structure based on the passed in tag IDs.
MooseObjectWarehouse< Function > _functions
functions
void project_vector(NumericVector< Number > &new_vector, FunctionBase< Number > *f, FunctionBase< Gradient > *g=nullptr, int is_adjoint=-1) const
virtual void addObject(std::shared_ptr< T > object, THREAD_ID tid=0, bool recurse=true)
Adds an object to the storage structure.
virtual Real & timeOld() const
Proxy for accessing MaterialPropertyStorage.
std::vector< VectorVariableValue > _vector_zero
bool hasMultiApp(const std::string &name) const
void createMortarInterface(const std::pair< BoundaryID, BoundaryID > &primary_secondary_boundary_pair, const std::pair< SubdomainID, SubdomainID > &primary_secondary_subdomain_pair, bool on_displaced, bool periodic, const bool debug, const bool correct_edge_dropping, const Real minimum_projection_angle)
std::vector< std::unique_ptr< libMesh::CouplingMatrix > > _cm
Coupling matrix for variables.
bool needInterfaceMaterialOnSide(BoundaryID bnd_id, const THREAD_ID tid)
void reinitElemFace(const Elem *elem, unsigned int side, BoundaryID, const THREAD_ID tid)
virtual void cacheResidualNeighbor(const THREAD_ID tid)
Linear system to be solved.
bool hasReporterValue(const ReporterName &reporter_name) const
Return True if a Reporter value with the given type and name have been created.
std::optional< std::vector< ConvergenceName > > _linear_convergence_names
Linear system(s) convergence name(s) (if any)
bool _has_initialized_stateful
Whether nor not stateful materials have been initialized.
void checkICRestartError(const std::string &ic_name, const std::string &name, const VariableName &var_name)
Checks if the variable of the initial condition is getting restarted and errors for specific cases...
virtual void setResidualNeighbor(NumericVector< libMesh::Number > &residual, const THREAD_ID tid) override
QueryCache & condition(Args &&... args)
Adds a new condition to the query.
const TagName SOLUTION_TAG
unsigned int _max_qps
Maximum number of quadrature points used in the problem.
A class for storing an input parameter name.
static InputParameters validParams()
Eigen::Matrix< Real, Eigen::Dynamic, 1 > RealEigenVector
virtual void addScalarKernel(const std::string &kernel_name, const std::string &name, InputParameters ¶meters)
elem_info_iterator ownedElemInfoEnd()
std::set< const Elem * > & getElements()
Returns a writeable reference to the _elements container.
virtual void set(const numeric_index_type i, const T value)=0
void addGhostedBoundary(BoundaryID boundary_id)
This will add the boundary ids to be ghosted to this processor.
bool _preserve_matrix_sparsity_pattern
Whether to preserve the system matrix / Jacobian sparsity pattern, using 0-valued entries usually...
virtual unsigned int nNonlinearIterations(const unsigned int nl_sys_num) const override
CoverageCheckMode _material_coverage_check
Determines whether and which subdomains are to be checked to ensure that they have an active material...
bool isAdaptivityDue()
Query if an adaptivity step should be performed at the current time / time step.
virtual std::size_t numLinearSystems() const override
MaterialPropertyStorage & _neighbor_material_props
std::unique_ptr< Backup > finalizeRestore()
Finalizes (closes) the restoration process done in restore().
libMesh::StoredRange< MooseMesh::const_bnd_elem_iterator, const BndElement * > * getBoundaryElementRange()
bool isParamValid(const std::string &name) const
Test if the supplied parameter is valid.
MOOSE now contains C++17 code, so give a reasonable error message stating what the user can do to add...
const ConsoleStream _console
An instance of helper class to write streams to the Console objects.
const std::size_t _num_linear_sys
The number of linear systems.
std::map< std::string, unsigned int > _subspace_dim
Dimension of the subspace spanned by the vectors with a given prefix.
const libMesh::ConstElemRange & getEvaluableElementRange()
In general, {evaluable elements} >= {local elements} U {algebraic ghosting elements}.
static InputParameters validParams()
bool _currently_computing_residual
Whether the residual is being evaluated.
const UserObject & getUserObjectBase(const std::string &name, const THREAD_ID tid=0) const
Get the user object by its name.
This is a "smart" enum class intended to replace many of the shortcomings in the C++ enum type...
MooseVariableFieldBase & getVariable(THREAD_ID tid, const std::string &var_name) const
Gets a reference to a variable of with specified name.
bool _has_internal_edge_residual_objects
Whether the problem has dgkernels or interface kernels.
bool execMultiApps(ExecFlagType type, bool auto_advance=true)
Execute the MultiApps associated with the ExecFlagType.
const std::string & name() const
const std::unordered_map< std::pair< BoundaryID, BoundaryID >, AutomaticMortarGeneration > & getMortarInterfaces(bool on_displaced) const
virtual ArrayMooseVariable & getArrayVariable(const THREAD_ID tid, const std::string &var_name) override
Returns the variable reference for requested ArrayMooseVariable which may be in any system...
const ExecFlagType EXEC_SUBDOMAIN
void paramWarning(const std::string ¶m, Args... args) const
Emits a warning prefixed with the file and line number of the given param (from the input file) along...
bool _has_constraints
Whether or not this system has any Constraints.
virtual bool isTransient() const override
bool hasMultiApps() const
Returns whether or not the current simulation has any multiapps.
virtual void reinitNeighbor(const Elem *elem, unsigned int side, const THREAD_ID tid) override
const MaterialData & getMaterialData(const THREAD_ID tid) const
void doingPRefinement(bool doing_p_refinement)
Indicate whether the kind of adaptivity we're doing is p-refinement.
const bool & currentlyComputingJacobian() const
Returns true if the problem is in the process of computing the Jacobian.
void notifyWhenMeshChanges(MeshChangedInterface *mci)
Register an object that derives from MeshChangedInterface to be notified when the mesh changes...
ConstElemPointerRange * coarsenedElementRange() const
Return a range that is suitable for threaded execution over elements that were just coarsened...
std::unique_ptr< libMesh::ConstElemRange > _evaluable_local_elem_range
const Moose::PatchUpdateType & getPatchUpdateStrategy() const
Get the current patch update strategy.
virtual void executeAllObjects(const ExecFlagType &exec_type)
CoverageCheckMode _kernel_coverage_check
Determines whether and which subdomains are to be checked to ensure that they have an active kernel...
virtual void setActiveFEVariableCoupleableVectorTags(std::set< TagID > &vtags, const THREAD_ID tid) override
void check() const
Perform integrity check for get/declare calls.
std::set< std::string > getPostprocessorNames() const
Return a list of all postprocessor names.
bool _fail_next_system_convergence_check
void ghostGhostedBoundaries()
Actually do the ghosting of boundaries that need to be ghosted to this processor. ...
std::vector< std::shared_ptr< LinearSystem > > _linear_systems
The vector of linear systems.
const hit::Node * getHitNode() const
std::shared_ptr< XFEMInterface > _xfem
Pointer to XFEM controller.
virtual void prepareShapes(unsigned int var, const THREAD_ID tid) override
const bool _boundary_restricted_elem_integrity_check
whether to perform checking of boundary restricted elemental object variable dependencies, e.g.
void reinitMaterialsInterface(BoundaryID boundary_id, const THREAD_ID tid, bool swap_stateful=true)
bool _const_jacobian
true if the Jacobian is constant
virtual void computeJacobianBlock(libMesh::SparseMatrix< libMesh::Number > &jacobian, libMesh::System &precond_system, unsigned int ivar, unsigned int jvar)
Really not a good idea to use this.
virtual void solveLinearSystem(const unsigned int linear_sys_num, const Moose::PetscSupport::PetscOptions *po=nullptr)
Build and solve a linear system.
virtual void computeUserObjectByName(const ExecFlagType &type, const Moose::AuxGroup &group, const std::string &name)
Compute an user object with the given name.
virtual void possiblyRebuildGeomSearchPatches()
virtual void add(const numeric_index_type i, const T value)=0
bool _safe_access_tagged_matrices
Is it safe to retrieve data from tagged matrices.
std::set< TagID > _linear_vector_tags
Temporary storage for filtered vector tags for linear systems.
Class that represents the dependecy as a graph.
DiracKernelInfo _dirac_kernel_info
A MultiApp represents one or more MOOSE applications that are running simultaneously.
const TagName PREVIOUS_NL_SOLUTION_TAG
void updateBoundaryVariableDependency(std::set< MooseVariableFieldBase *> &needed_moose_vars, THREAD_ID tid=0) const
processor_id_type processor_id() const
void addObject(std::shared_ptr< FVInitialConditionBase > object, THREAD_ID tid, bool recurse=true)
Add object to the warehouse.
std::vector< T * > & queryIntoUnsorted(std::vector< T *> &results, Args &&... args)
queryInto executes the query and stores the results in the given vector.
const libMesh::ConstElemRange & getNonlinearEvaluableElementRange()
A class for storing the names of MooseObject by tag and object name.
MaterialPropertyStorage & _material_props
Base class for Postprocessors that produce a vector of values.
virtual Order default_order() const=0
void prepareMaterials(const std::unordered_set< unsigned int > &consumer_needed_mat_props, const SubdomainID blk_id, const THREAD_ID tid)
Add the MooseVariables and the material properties that the current materials depend on to the depend...
virtual void addFVKernel(const std::string &kernel_name, const std::string &name, InputParameters ¶meters)
virtual void addFVBC(const std::string &fv_bc_name, const std::string &name, InputParameters ¶meters)
libMesh::Order _max_scalar_order
Maximum scalar variable order.
virtual void addGhostedBoundary(BoundaryID boundary_id) override
Will make sure that all necessary elements from boundary_id are ghosted to this processor.
virtual bool hasFunction(const std::string &name, const THREAD_ID tid=0)
Adaptivity & adaptivity()
bool hasActiveMaterialProperties(const THREAD_ID tid) const
Method to check whether or not a list of active material roperties has been set.
ExecuteMooseObjectWarehouse< Transfer > _between_multi_app_transfers
Transfers executed just before MultiApps to transfer data between them.
bool isRecovering() const
Whether or not this is a "recover" calculation.
SystemBase & sys()
Get the system this variable is part of.
virtual void cacheJacobian(const THREAD_ID tid) override
auto min(const L &left, const R &right)
void jacobianSetup() override
virtual std::size_t numSolverSystems() const override
virtual void addHDGKernel(const std::string &kernel_name, const std::string &name, InputParameters ¶meters)
virtual NumericVector< Number > & getVector(const std::string &name)
Get a raw NumericVector by name.
Restartable::ManagedValue< RestartableEquationSystems > _req
The EquationSystems object, wrapped for restart.
virtual unsigned int currentLinearSysNum() const override
std::vector< libMesh::CouplingMatrix > _nonlocal_cm
nonlocal coupling matrix
virtual void reinitNodeFace(const Node *node, BoundaryID bnd_id, const THREAD_ID tid) override
virtual void reinitOffDiagScalars(const THREAD_ID tid) override
processor_id_type processor_id() const
virtual void reinitElemPhys(const Elem *elem, const std::vector< Point > &phys_points_in_elem, const THREAD_ID tid) override
std::vector< std::unordered_map< BoundaryID, bool > > _interface_mat_side_cache
Cache for calculating materials on interface.
virtual void addObject(std::shared_ptr< T > object, THREAD_ID tid=0, bool recurse=true) override
Adds an object to the storage structure.
const std::vector< std::string > & get_nodal_var_names()
std::string getRestartRecoverFileBase() const
The file_base for the recovery file.
virtual void addJacobianNeighborLowerD(const THREAD_ID tid) override
virtual void prepareNeighborShapes(unsigned int var, const THREAD_ID tid) override
MooseObjectWarehouse< Marker > _markers
FVInitialConditionWarehouse _fv_ics
void setVerboseProblem(bool verbose)
Make the problem be verbose.
virtual void setNeighborSubdomainID(const Elem *elem, unsigned int side, const THREAD_ID tid) override
virtual const VectorTag & getVectorTag(const TagID tag_id) const
Get a VectorTag from a TagID.
MaterialBases compute MaterialProperties.
virtual void initialAdaptMesh()
void updatePointLocator(const MooseMesh &mesh)
Called during FEProblemBase::meshChanged() to update the PointLocator object used by the DiracKernels...
virtual void addResidualScalar(const THREAD_ID tid=0)
This is a template class that implements the workhorse compute and computeNodal methods.
MaterialWarehouse _all_materials
const MeshBase::element_iterator activeLocalElementsEnd()
virtual void addCachedResidual(const THREAD_ID tid) override
for(PetscInt i=0;i< nvars;++i)
void clearNearestNodeLocators()
Clear out the Penetration Locators so they will redo the search.
Moose::PetscSupport::PetscOptions _petsc_options
PETSc option storage.
libMesh::StoredRange< MooseMesh::const_bnd_node_iterator, const BndNode * > * getBoundaryNodeRange()
virtual const std::vector< std::shared_ptr< Convergence > > & getConvergenceObjects(const THREAD_ID tid=0) const
Gets the Convergence objects.
void ErrorVector unsigned int
virtual void clearActiveElementalMooseVariables(const THREAD_ID tid) override
Clear the active elemental MooseVariableFEBase.
auto index_range(const T &sizable)
Base class for user-specific data.
void timestepSetup()
Calls the timestepSetup function for each of the output objects.
void allowOutput(bool state)
Ability to enable/disable all output calls.
virtual void cacheJacobian(const THREAD_ID tid)
virtual Sampler & getSampler(const std::string &name, const THREAD_ID tid=0)
const std::string & _type
The type of this class.
virtual void outputStep(ExecFlagType type)
Output the current step.
void projectInitialConditionOnCustomRange(libMesh::ConstElemRange &elem_range, ConstBndNodeRange &bnd_node_range, const std::optional< std::set< VariableName >> &target_vars=std::nullopt)
Project initial conditions for custom elem_range and bnd_node_range This is needed when elements/boun...
virtual unsigned int nlSysNum(const NonlinearSystemName &nl_sys_name) const override
OutputWarehouse & getOutputWarehouse()
Get the OutputWarehouse objects.
MooseEnum _verbose_setup
Whether or not to be verbose during setup.
static InputParameters validParams()
RedistributeProperties is used for its redistribute() callback, which ensures that any stateful prope...
unsigned int state
The state.
virtual void computeJacobianTags(const std::set< TagID > &tags)
Form multiple matrices, and each is associated with a tag.
void computeSystems(const ExecFlagType &type)
Do generic system computations.
MooseMesh * _displaced_mesh
void resize(unsigned int n_qpoints)
Resize the data to hold properties for n_qpoints quadrature points.
bool _has_mortar
Whether the simulation requires mortar coupling.
void computeLinearSystemTags(const std::set< TagID > &vector_tags, const std::set< TagID > &matrix_tags, const bool compute_gradients=true)
Compute the right hand side and the system matrix of the system for given tags.
libMesh::Order getMaxScalarOrder() const
void execTransfers(ExecFlagType type)
Execute the Transfers associated with the ExecFlagType.
void addNotZeroedVectorTag(const TagID tag)
Adds a vector tag to the list of vectors that will not be zeroed when other tagged vectors are...
void restoreState(bool verbose=false)
When a time step fails, this method is called to revert the current reporter values to their old stat...
void meshChanged()
Declares that the MooseMesh has changed, invalidates cached data and rebuilds caches.
void buildPRefinementAndCoarseningMaps(Assembly *assembly)
const std::vector< ConvergenceName > & getLinearConvergenceNames() const
Gets the linear convergence object name(s).
virtual void ghostGhostedBoundaries() override
Causes the boundaries added using addGhostedBoundary to actually be ghosted.
const ExecFlagType EXEC_POST_ADAPTIVITY
void add_ghosting_functor(GhostingFunctor &ghosting_functor)
MaterialWarehouse _materials
virtual void addJacobianScalar(const THREAD_ID tid=0)
virtual void addDiracKernel(const std::string &kernel_name, const std::string &name, InputParameters ¶meters)
An instance of this object type has one copy per thread that runs on each thread. ...
MooseObjectWarehouse< IntegratedBCBase > _nonlocal_integrated_bcs
nonlocal integrated_bcs
virtual void computeResidualTag(const NumericVector< libMesh::Number > &soln, NumericVector< libMesh::Number > &residual, TagID tag)
Form a residual vector for a given tag.
virtual VectorMooseVariable & getVectorVariable(const THREAD_ID tid, const std::string &var_name) override
Returns the variable reference for requested VectorMooseVariable which may be in any system...
std::shared_ptr< LineSearch > _line_search
void initXFEM(std::shared_ptr< XFEMInterface > xfem)
Create XFEM controller object.
const std::set< SubdomainID > & meshSubdomains() const
Returns a read-only reference to the set of subdomains currently present in the Mesh.
SubdomainID getSubdomainID(const SubdomainName &subdomain_name) const
Get the associated subdomain ID for the subdomain name.
const FEType & type() const
Base class for all Transfer objects.
virtual void neighborSubdomainSetup(SubdomainID subdomain, const THREAD_ID tid)
void setupFiniteVolumeMeshData() const
Sets up the additional data needed for finite volume computations.
virtual void addCachedJacobian(const THREAD_ID tid) override
virtual void residualSetup(THREAD_ID tid=0) const
virtual void sizeZeroes(unsigned int size, const THREAD_ID tid)
virtual Real computeDamping(const NumericVector< libMesh::Number > &soln, const NumericVector< libMesh::Number > &update)
std::vector< Real > _real_zero
Convenience zeros.
MooseObjectWarehouse< KernelBase > _nonlocal_kernels
nonlocal kernels
void checkCoordinateSystems()
Verify that there are no element type/coordinate type conflicts.
unsigned int getMaxQps() const
const ExecFlagType EXEC_INITIAL
virtual libMesh::System & system() override
Get the reference to the libMesh system.
bool _verbose_multiapps
Whether or not to be verbose with multiapps.
Key structure for APIs manipulating global vectors/matrices.