22 #include "libmesh/mesh_tools.h" 23 #include "libmesh/explicit_system.h" 24 #include "libmesh/numeric_vector.h" 25 #include "libmesh/elem.h" 26 #include "libmesh/node.h" 27 #include "libmesh/dof_map.h" 28 #include "libmesh/edge_edge2.h" 29 #include "libmesh/edge_edge3.h" 30 #include "libmesh/face_tri3.h" 31 #include "libmesh/face_tri6.h" 32 #include "libmesh/face_tri7.h" 33 #include "libmesh/face_quad4.h" 34 #include "libmesh/face_quad8.h" 35 #include "libmesh/face_quad9.h" 36 #include "libmesh/exodusII_io.h" 37 #include "libmesh/quadrature_gauss.h" 38 #include "libmesh/quadrature_nodal.h" 39 #include "libmesh/distributed_mesh.h" 40 #include "libmesh/replicated_mesh.h" 41 #include "libmesh/enum_to_string.h" 42 #include "libmesh/statistics.h" 43 #include "libmesh/equation_systems.h" 45 #include "metaphysicl/dualnumber.h" 58 #if NANOFLANN_VERSION < 0x150 85 if (_amg._secondary_node_to_nodal_normal.empty() ||
86 _amg._secondary_node_to_hh_nodal_tangents.empty())
87 mooseError(
"No entries found in the secondary node -> nodal geometry map.");
89 auto & problem = _app.feProblem();
90 auto & subproblem = _amg._on_displaced
91 ?
static_cast<SubProblem &
>(*problem.getDisplacedProblem())
92 : static_cast<SubProblem &>(problem);
93 auto & nodal_normals_es = subproblem.
es();
95 const std::string nodal_normals_sys_name =
"nodal_normals";
97 if (!_nodal_normals_system)
99 for (
const auto s :
make_range(nodal_normals_es.n_systems()))
100 if (!nodal_normals_es.get_system(s).is_initialized())
105 _nodal_normals_system =
106 &nodal_normals_es.template add_system<ExplicitSystem>(nodal_normals_sys_name);
107 _nnx_var_num = _nodal_normals_system->add_variable(
"nodal_normal_x",
FEType(
FIRST,
LAGRANGE)),
108 _nny_var_num = _nodal_normals_system->add_variable(
"nodal_normal_y",
FEType(
FIRST,
LAGRANGE));
109 _nnz_var_num = _nodal_normals_system->add_variable(
"nodal_normal_z",
FEType(
FIRST,
LAGRANGE));
124 nodal_normals_es.
reinit();
127 const DofMap & dof_map = _nodal_normals_system->get_dof_map();
128 std::vector<dof_id_type> dof_indices_nnx, dof_indices_nny, dof_indices_nnz;
129 std::vector<dof_id_type> dof_indices_t1x, dof_indices_t1y, dof_indices_t1z;
130 std::vector<dof_id_type> dof_indices_t2x, dof_indices_t2y, dof_indices_t2z;
132 for (MeshBase::const_element_iterator el = _amg._mesh.elements_begin(),
133 end_el = _amg._mesh.elements_end();
137 const Elem * elem = *el;
140 dof_map.
dof_indices(elem, dof_indices_nnx, _nnx_var_num);
141 dof_map.
dof_indices(elem, dof_indices_nny, _nny_var_num);
142 dof_map.
dof_indices(elem, dof_indices_nnz, _nnz_var_num);
144 dof_map.
dof_indices(elem, dof_indices_t1x, _t1x_var_num);
145 dof_map.
dof_indices(elem, dof_indices_t1y, _t1y_var_num);
146 dof_map.
dof_indices(elem, dof_indices_t1z, _t1z_var_num);
148 dof_map.
dof_indices(elem, dof_indices_t2x, _t2x_var_num);
149 dof_map.
dof_indices(elem, dof_indices_t2y, _t2y_var_num);
150 dof_map.
dof_indices(elem, dof_indices_t2z, _t2z_var_num);
158 auto it = _amg._secondary_node_to_nodal_normal.find(elem->
node_ptr(n));
159 if (it != _amg._secondary_node_to_nodal_normal.end())
161 _nodal_normals_system->solution->set(dof_indices_nnx[n], it->second(0));
162 _nodal_normals_system->solution->set(dof_indices_nny[n], it->second(1));
163 _nodal_normals_system->solution->set(dof_indices_nnz[n], it->second(2));
166 auto it_tangent = _amg._secondary_node_to_hh_nodal_tangents.find(elem->
node_ptr(n));
167 if (it_tangent != _amg._secondary_node_to_hh_nodal_tangents.end())
169 _nodal_normals_system->solution->set(dof_indices_t1x[n], it_tangent->second[0](0));
170 _nodal_normals_system->solution->set(dof_indices_t1y[n], it_tangent->second[0](1));
171 _nodal_normals_system->solution->set(dof_indices_t1z[n], it_tangent->second[0](2));
173 _nodal_normals_system->solution->set(dof_indices_t2x[n], it_tangent->second[1](0));
174 _nodal_normals_system->solution->set(dof_indices_t2y[n], it_tangent->second[1](1));
175 _nodal_normals_system->solution->set(dof_indices_t2z[n], it_tangent->second[1](2));
182 _nodal_normals_system->solution->close();
184 std::set<std::string> sys_names = {nodal_normals_sys_name};
193 "nodal_geometry_only.e", nodal_normals_es, &sys_names);
220 const std::pair<BoundaryID, BoundaryID> & boundary_key,
221 const std::pair<SubdomainID, SubdomainID> & subdomain_key,
225 const bool correct_edge_dropping,
226 const Real minimum_projection_angle)
231 _on_displaced(on_displaced),
234 _distributed(_on_displaced ? false : !_mesh.is_replicated()),
235 _correct_edge_dropping(correct_edge_dropping),
236 _minimum_projection_angle(minimum_projection_angle)
262 "mortar_nodal_geometry_" +
296 "Must specify secondary and primary boundary ids before building node-to-elem maps.");
299 for (
const auto & secondary_elem :
306 for (
const auto & nd : secondary_elem->node_ref_range())
309 vec.push_back(secondary_elem);
314 for (
const auto & primary_elem :
321 for (
const auto & nd : primary_elem->node_ref_range())
324 vec.push_back(primary_elem);
332 std::vector<Point> nodal_normals(secondary_elem.
n_nodes());
336 return nodal_normals;
344 "Map should locate secondary element");
349 std::map<unsigned int, unsigned int>
352 std::map<unsigned int, unsigned int> secondary_ip_i_to_lower_secondary_i;
354 mooseAssert(secondary_ip,
"This should be non-null");
358 const auto & nd = lower_secondary_elem.
node_ref(i);
359 secondary_ip_i_to_lower_secondary_i[secondary_ip->
get_node_index(&nd)] = i;
362 return secondary_ip_i_to_lower_secondary_i;
365 std::map<unsigned int, unsigned int>
367 const Elem & lower_primary_elem,
368 const Elem & primary_elem,
371 std::map<unsigned int, unsigned int> primary_ip_i_to_lower_primary_i;
375 const auto & nd = lower_primary_elem.
node_ref(i);
376 primary_ip_i_to_lower_primary_i[primary_elem.
get_node_index(&nd)] = i;
379 return primary_ip_i_to_lower_primary_i;
382 std::array<MooseUtils::SemidynamicVector<Point, 9>, 2>
386 MooseUtils::SemidynamicVector<Point, 9> nodal_tangents_one(0);
387 MooseUtils::SemidynamicVector<Point, 9> nodal_tangents_two(0);
391 const auto & tangent_vectors =
393 nodal_tangents_one.push_back(tangent_vectors[0]);
394 nodal_tangents_two.push_back(tangent_vectors[1]);
397 return {{nodal_tangents_one, nodal_tangents_two}};
402 const std::vector<Real> & oned_xi1_pts)
const 404 std::vector<Point> xi1_pts(oned_xi1_pts.size());
406 xi1_pts[qp] = oned_xi1_pts[qp];
413 const std::vector<Point> & xi1_pts)
const 416 const auto num_qps = xi1_pts.size();
418 std::vector<Point> normals(num_qps);
430 normals[qp] += phi * nodal_normals[n];
434 for (
auto & normal : normals)
446 std::size_t node_unique_id_offset = 0;
454 const auto primary_bnd_id = pr.first;
455 const auto secondary_bnd_id = pr.second;
456 const auto num_primary_nodes =
457 std::distance(
_mesh.bid_nodes_begin(primary_bnd_id),
_mesh.bid_nodes_end(primary_bnd_id));
458 const auto num_secondary_nodes = std::distance(
_mesh.bid_nodes_begin(secondary_bnd_id),
459 _mesh.bid_nodes_end(secondary_bnd_id));
460 mooseAssert(num_primary_nodes,
461 "There are no primary nodes on boundary ID " 462 << primary_bnd_id <<
". Does that bondary ID even exist on the mesh?");
463 mooseAssert(num_secondary_nodes,
464 "There are no secondary nodes on boundary ID " 465 << secondary_bnd_id <<
". Does that bondary ID even exist on the mesh?");
467 node_unique_id_offset += num_primary_nodes + 2 * num_secondary_nodes;
471 for (MeshBase::const_element_iterator el =
_mesh.active_elements_begin(),
472 end_el =
_mesh.active_elements_end();
476 const Elem * secondary_elem = *el;
482 std::vector<Node *> new_nodes;
483 for (MooseIndex(secondary_elem->
n_nodes()) n = 0; n < secondary_elem->
n_nodes(); ++n)
487 Node *
const new_node = new_nodes.back();
491 std::unique_ptr<Elem> new_elem;
493 new_elem = std::make_unique<Edge3>();
495 new_elem = std::make_unique<Edge2>();
497 new_elem->processor_id() = secondary_elem->
processor_id();
498 new_elem->subdomain_id() = secondary_elem->
subdomain_id();
499 new_elem->set_id(local_id_index++);
500 new_elem->set_unique_id(new_elem->id());
502 for (MooseIndex(new_elem->n_nodes()) n = 0; n < new_elem->n_nodes(); ++n)
503 new_elem->set_node(n, new_nodes[n]);
514 std::make_pair(secondary_elem->
node_ptr(0), secondary_elem)),
516 std::make_pair(secondary_elem->
node_ptr(1), secondary_elem));
518 bool new_container_node0_found =
520 new_container_node1_found =
523 const Elem * node0_primary_candidate =
nullptr;
524 const Elem * node1_primary_candidate =
nullptr;
526 if (new_container_node0_found)
528 const auto & xi2_primary_elem_pair = new_container_it0->second;
529 msinfo.
xi2_a = xi2_primary_elem_pair.first;
530 node0_primary_candidate = xi2_primary_elem_pair.second;
533 if (new_container_node1_found)
535 const auto & xi2_primary_elem_pair = new_container_it1->second;
536 msinfo.
xi2_b = xi2_primary_elem_pair.first;
537 node1_primary_candidate = xi2_primary_elem_pair.second;
544 if (node0_primary_candidate == node1_primary_candidate)
559 auto val = pr.second;
561 const Node * primary_node = std::get<1>(key);
562 Real xi1 = val.first;
563 const Elem * secondary_elem = val.second;
573 for (MooseIndex(secondary_elem->
n_nodes()) n = 0; n < secondary_elem->
n_nodes(); ++n)
578 Elem * current_mortar_segment =
nullptr;
581 for (
const auto & mortar_segment_candidate : mortar_segment_set)
587 catch (std::out_of_range &)
589 mooseError(
"MortarSegmentInfo not found for the mortar segment candidate");
591 if (
info->xi1_a <= xi1 && xi1 <= info->xi1_b)
593 current_mortar_segment = mortar_segment_candidate;
599 if (current_mortar_segment ==
nullptr)
600 mooseError(
"Unable to find appropriate mortar segment during linear search!");
607 if (
info->xi1_a == xi1 || xi1 ==
info->xi1_b)
612 "new_id must be the same on all processes");
613 Node *
const new_node =
615 new_node->set_unique_id(new_id + node_unique_id_offset);
620 const Point normal =
getNormals(*secondary_elem, std::vector<Real>({xi1}))[0];
625 mooseError(
"We should already have built this primary node to elem pair!");
626 const std::vector<const Elem *> & primary_node_neighbors =
630 if (primary_node_neighbors.size() == 0 || primary_node_neighbors.size() > 2)
631 mooseError(
"We must have either 1 or 2 primary side nodal neighbors, but we had ",
632 primary_node_neighbors.size());
639 const Elem * left_primary_elem = primary_node_neighbors[0];
640 const Elem * right_primary_elem =
641 (primary_node_neighbors.size() == 2) ? primary_node_neighbors[1] :
nullptr;
647 std::array<Real, 2> secondary_node_cps;
648 std::vector<Real> primary_node_cps(primary_node_neighbors.size());
651 for (
unsigned int nid = 0; nid < 2; ++nid)
652 secondary_node_cps[nid] = normal.
cross(secondary_elem->
point(nid) - new_pt)(2);
654 for (MooseIndex(primary_node_neighbors) mnn = 0; mnn < primary_node_neighbors.size(); ++mnn)
656 const Elem * primary_neigh = primary_node_neighbors[mnn];
657 Point opposite = (primary_neigh->
node_ptr(0) == primary_node) ? primary_neigh->
point(1)
658 : primary_neigh->
point(0);
660 primary_node_cps[mnn] = cp(2);
664 bool orientation1_valid =
false, orientation2_valid =
false;
666 if (primary_node_neighbors.size() == 2)
669 orientation1_valid = (secondary_node_cps[0] * primary_node_cps[0] > 0.) &&
670 (secondary_node_cps[1] * primary_node_cps[1] > 0.);
672 orientation2_valid = (secondary_node_cps[0] * primary_node_cps[1] > 0.) &&
673 (secondary_node_cps[1] * primary_node_cps[0] > 0.);
675 else if (primary_node_neighbors.size() == 1)
678 orientation1_valid = (secondary_node_cps[0] * primary_node_cps[0] > 0.);
679 orientation2_valid = (secondary_node_cps[1] * primary_node_cps[0] > 0.);
682 mooseError(
"Invalid primary node neighbors size ", primary_node_neighbors.size());
688 if (orientation1_valid && orientation2_valid)
690 "AutomaticMortarGeneration: Both orientations cannot simultaneously be valid.");
696 if (!orientation1_valid && !orientation2_valid)
699 "AutomaticMortarGeneration: Unable to determine valid secondary-primary orientation. " 700 "Consequently we will consider projection of the primary node invalid and not split the " 702 "This situation can indicate there are very oblique projections between primary (mortar) " 703 "and secondary (non-mortar) surfaces for a good problem set up. It can also mean your " 704 "time step is too large. This message is only printed once."));
709 std::unique_ptr<Elem> new_elem_left;
711 new_elem_left = std::make_unique<Edge3>();
713 new_elem_left = std::make_unique<Edge2>();
715 new_elem_left->processor_id() = current_mortar_segment->
processor_id();
716 new_elem_left->subdomain_id() = current_mortar_segment->
subdomain_id();
717 new_elem_left->set_id(local_id_index++);
718 new_elem_left->set_unique_id(new_elem_left->id());
719 new_elem_left->set_node(0, current_mortar_segment->
node_ptr(0));
720 new_elem_left->set_node(1, new_node);
723 std::unique_ptr<Elem> new_elem_right;
725 new_elem_right = std::make_unique<Edge3>();
727 new_elem_right = std::make_unique<Edge2>();
729 new_elem_right->processor_id() = current_mortar_segment->
processor_id();
730 new_elem_right->subdomain_id() = current_mortar_segment->
subdomain_id();
731 new_elem_right->set_id(local_id_index++);
732 new_elem_right->set_unique_id(new_elem_right->id());
733 new_elem_right->set_node(0, new_node);
734 new_elem_right->set_node(1, current_mortar_segment->
node_ptr(1));
739 Point left_interior_point(0);
740 Real left_interior_xi = (xi1 +
info->xi1_a) / 2;
743 Real current_left_interior_eta =
744 (2. * left_interior_xi -
info->xi1_a -
info->xi1_b) / (
info->xi1_b -
info->xi1_a);
746 for (MooseIndex(current_mortar_segment->
n_nodes()) n = 0;
747 n < current_mortar_segment->
n_nodes();
750 current_mortar_segment->
point(n);
754 "new_id must be the same on all processes");
756 left_interior_point, new_interior_left_id, new_elem_left->processor_id());
757 new_elem_left->set_node(2, new_interior_node_left);
758 new_interior_node_left->set_unique_id(new_interior_left_id + node_unique_id_offset);
761 Point right_interior_point(0);
762 Real right_interior_xi = (xi1 +
info->xi1_b) / 2;
764 Real current_right_interior_eta =
765 (2. * right_interior_xi -
info->xi1_a -
info->xi1_b) / (
info->xi1_b -
info->xi1_a);
767 for (MooseIndex(current_mortar_segment->
n_nodes()) n = 0;
768 n < current_mortar_segment->
n_nodes();
771 current_mortar_segment->
point(n);
775 "new_id must be the same on all processes");
777 right_interior_point, new_interior_id_right, new_elem_right->processor_id());
778 new_elem_right->set_node(2, new_interior_node_right);
779 new_interior_node_right->set_unique_id(new_interior_id_right + node_unique_id_offset);
783 if (orientation2_valid)
784 std::swap(left_primary_elem, right_primary_elem);
788 if (left_primary_elem)
789 left_xi2 = (primary_node == left_primary_elem->
node_ptr(0)) ? -1 : +1;
790 if (right_primary_elem)
791 right_xi2 = (primary_node == right_primary_elem->
node_ptr(0)) ? -1 : +1;
800 mooseError(
"MortarSegmentInfo not found for current_mortar_segment.");
816 new_msinfo_left.
xi1_b = xi1;
817 new_msinfo_left.
xi2_b = left_xi2;
825 mortar_segment_set.insert(msm_new_elem);
835 new_msinfo_right.
xi1_b = current_msinfo.
xi1_b;
836 new_msinfo_right.
xi2_b = current_msinfo.
xi2_b;
838 new_msinfo_right.
xi1_a = xi1;
839 new_msinfo_right.
xi2_a = right_xi2;
844 mortar_segment_set.insert(msm_new_elem);
852 mortar_segment_set.erase(current_mortar_segment);
869 if (primary_elem ==
nullptr ||
abs(msinfo.
xi2_a) > 1.0 + TOLERANCE ||
870 abs(msinfo.
xi2_b) > 1.0 + TOLERANCE)
875 "We should have found the element");
876 auto & msm_set = it->second;
877 msm_set.erase(msm_elem);
900 std::unordered_set<Node *> msm_connected_nodes;
905 for (
auto & n : element->node_ref_range())
906 msm_connected_nodes.insert(&n);
909 if (!msm_connected_nodes.count(node))
918 "All mortar segment elements should have valid " 933 mortar_segment_mesh_writer.
write(
"mortar_segment_mesh.e");
952 const auto primary_subd_id = pr.first;
953 const auto secondary_subd_id = pr.second;
958 3, mesh_adaptor, nanoflann::KDTreeSingleIndexAdaptorParams(10));
961 kd_tree.buildIndex();
964 auto get_sub_elem_nodes = [](
const ElemType type,
965 const unsigned int sub_elem) -> std::vector<unsigned int>
972 return {{0, 1, 2, 3}};
986 mooseError(
"get_sub_elem_nodes: Invalid sub_elem: ", sub_elem);
1000 return {{4, 5, 6, 7}};
1002 mooseError(
"get_sub_elem_nodes: Invalid sub_elem: ", sub_elem);
1008 return {{0, 4, 8, 7}};
1010 return {{4, 1, 5, 8}};
1012 return {{8, 5, 2, 6}};
1014 return {{7, 8, 6, 3}};
1016 mooseError(
"get_sub_elem_nodes: Invalid sub_elem: ", sub_elem);
1019 mooseError(
"get_sub_elem_inds: Face element type: ",
1020 libMesh::Utility::enum_to_string<ElemType>(type),
1021 " invalid for 3D mortar");
1028 for (MeshBase::const_element_iterator el =
_mesh.active_local_elements_begin(),
1029 end_el =
_mesh.active_local_elements_end();
1033 const Elem * secondary_side_elem = *el;
1035 const Real secondary_volume = secondary_side_elem->
volume();
1038 if (secondary_side_elem->
subdomain_id() != secondary_subd_id)
1041 auto [secondary_elem_to_msm_map_it, insertion_happened] =
1043 std::set<Elem *, CompareDofObjectsByID>{});
1045 auto & secondary_to_msm_element_set = secondary_elem_to_msm_map_it->second;
1047 std::vector<std::unique_ptr<MortarSegmentHelper>> mortar_segment_helper(
1064 auto sub_elem_nodes = get_sub_elem_nodes(secondary_side_elem->
type(), sel);
1069 std::vector<Point> nodes(sub_elem_nodes.size());
1072 for (
auto iv :
make_range(sub_elem_nodes.size()))
1074 const auto n = sub_elem_nodes[iv];
1075 nodes[iv] = secondary_side_elem->
point(n);
1076 center += secondary_side_elem->
point(n);
1077 normal += nodal_normals[n];
1079 center /= sub_elem_nodes.size();
1080 normal = normal.
unit();
1083 mortar_segment_helper[sel] = std::make_unique<MortarSegmentHelper>(nodes, center, normal);
1094 std::array<Real, 3> query_pt;
1096 switch (secondary_side_elem->
type())
1100 center_point = mortar_segment_helper[0]->center();
1101 query_pt = {{center_point(0), center_point(1), center_point(2)}};
1105 center_point = mortar_segment_helper[1]->center();
1106 query_pt = {{center_point(0), center_point(1), center_point(2)}};
1109 center_point = mortar_segment_helper[4]->center();
1110 query_pt = {{center_point(0), center_point(1), center_point(2)}};
1113 center_point = secondary_side_elem->
point(8);
1114 query_pt = {{center_point(0), center_point(1), center_point(2)}};
1118 "Face element type: ", secondary_side_elem->
type(),
"not supported for 3D mortar");
1124 const std::size_t num_results = 3;
1127 std::vector<size_t> ret_index(num_results);
1128 std::vector<Real> out_dist_sqr(num_results);
1129 nanoflann::KNNResultSet<Real> result_set(num_results);
1130 result_set.init(&ret_index[0], &out_dist_sqr[0]);
1134 std::set<const Elem *, CompareDofObjectsByID> processed_primary_elems;
1138 bool primary_elem_found =
false;
1139 std::set<const Elem *, CompareDofObjectsByID> primary_elem_candidates;
1147 "Lower-dimensional element squared distance verification failed.");
1150 std::vector<const Elem *> & node_elems =
1154 for (
auto elem : node_elems)
1155 primary_elem_candidates.insert(elem);
1165 while (!primary_elem_candidates.empty())
1167 const Elem * primary_elem_candidate = *primary_elem_candidates.begin();
1170 if (processed_primary_elems.count(primary_elem_candidate))
1174 std::vector<Point> nodal_points;
1177 std::vector<std::vector<unsigned int>> elem_to_node_map;
1180 std::vector<std::pair<unsigned int, unsigned int>> sub_elem_map;
1189 auto sub_elem_nodes = get_sub_elem_nodes(primary_elem_candidate->
type(), p_el);
1192 std::vector<Point> primary_sub_elem(sub_elem_nodes.size());
1193 for (
auto iv :
make_range(sub_elem_nodes.size()))
1195 const auto n = sub_elem_nodes[iv];
1196 primary_sub_elem[iv] = primary_elem_candidate->
point(n);
1209 mortar_segment_helper[s_el]->getMortarSegments(
1210 primary_sub_elem, nodal_points, elem_to_node_map);
1213 for (
auto i = sub_elem_map.size(); i < elem_to_node_map.size(); ++i)
1214 sub_elem_map.push_back(std::make_pair(s_el, p_el));
1219 processed_primary_elems.insert(primary_elem_candidate);
1220 primary_elem_candidates.erase(primary_elem_candidate);
1223 if (!elem_to_node_map.empty())
1228 if (!primary_elem_found)
1230 primary_elem_found =
true;
1231 primary_elem_candidates.clear();
1238 if (neighbor ==
nullptr || neighbor->subdomain_id() != primary_subd_id)
1241 if (processed_primary_elems.count(neighbor))
1244 primary_elem_candidates.insert(neighbor);
1250 std::vector<Node *> new_nodes;
1251 for (
auto pt : nodal_points)
1259 std::unique_ptr<Elem> new_elem;
1260 if (elem_to_node_map[el].size() == 3)
1261 new_elem = std::make_unique<Tri3>();
1263 mooseError(
"Active mortar segments only supports TRI elements, 3 nodes expected " 1265 elem_to_node_map[el].size(),
1268 new_elem->processor_id() = secondary_side_elem->
processor_id();
1269 new_elem->subdomain_id() = secondary_side_elem->
subdomain_id();
1270 new_elem->set_id(local_id_index++);
1274 new_elem->set_node(i, new_nodes[elem_to_node_map[el][i]]);
1277 if (new_elem->volume() / secondary_volume < TOLERANCE)
1295 secondary_to_msm_element_set.insert(msm_new_elem);
1309 if (mortar_segment_helper[sel]->remainder() == 1.0)
1311 mooseWarning(
"Some secondary elements on mortar interface were unable to identify" 1312 " a corresponding primary element; this may be expected depending on" 1313 " problem geometry but may indicate a failure of the element search" 1317 if (secondary_to_msm_element_set.empty())
1330 if (msm_el->type() !=
TRI3)
1331 msm_el->subdomain_id()++;
1338 mortar_segment_mesh_writer.
write(
"mortar_segment_mesh.e");
1342 if (msm_el->type() !=
TRI3)
1343 msm_el->subdomain_id()--;
1354 mooseWarning(
"Mortar segment mesh statistics intended for debugging purposes in serial only, " 1355 "parallel will only provide statistics for local mortar segment mesh.");
1362 std::unordered_map<processor_id_type, std::vector<std::pair<dof_id_type, dof_id_type>>>
1373 const Elem * secondary_elem = pr.second.secondary_elem;
1374 const Elem * primary_elem = pr.second.primary_elem;
1377 coupling_info[secondary_elem->
processor_id()].emplace_back(
1386 coupling_info[secondary_elem->
processor_id()].emplace_back(
1395 coupling_info[secondary_elem->
processor_id()].emplace_back(secondary_elem->
id(),
1396 primary_elem->
id());
1420 auto action_functor =
1422 const std::vector<std::pair<dof_id_type, dof_id_type>> & coupling_info)
1424 for (
auto [i, j] : coupling_info)
1434 Moose::out <<
"Mortar Interface Statistics:" << std::endl;
1439 const auto primary_subd_id = pr.first;
1440 const auto secondary_subd_id = pr.second;
1447 for (
auto * el :
_mesh.active_element_ptr_range())
1450 if (el->subdomain_id() == secondary_subd_id)
1451 secondary.push_back(el->volume());
1452 else if (el->subdomain_id() == primary_subd_id)
1453 primary.push_back(el->volume());
1461 msm.push_back(msm_elem->volume());
1465 std::vector<std::string> col_names = {
"mesh",
"n_elems",
"max",
"min",
"median"};
1466 std::vector<std::string> subds = {
"secondary_lower",
"primary_lower",
"mortar_segment"};
1467 std::vector<size_t> n_elems = {secondary.size(), primary.size(), msm.size()};
1477 table.
addData<std::string>(col_names[0], subds[i]);
1478 table.
addData<
size_t>(col_names[1], n_elems[i]);
1484 Moose::out <<
"secondary subdomain: " << secondary_subd_id
1485 <<
" \tprimary subdomain: " << primary_subd_id << std::endl;
1502 const Real tol = (
dim() == 3) ? 0.1 : TOLERANCE;
1504 std::unordered_map<processor_id_type, std::set<dof_id_type>> proc_to_inactive_nodes_set;
1508 std::unordered_set<dof_id_type> inactive_node_ids;
1510 std::unordered_map<const Elem *, Real> active_volume{};
1514 active_volume[el] = 0.;
1522 active_volume[secondary_elem] += msm_elem->
volume();
1530 if (
abs(active_volume[el] / el->volume() - 1.0) > tol)
1534 inactive_node_ids.insert(el->node_id(n));
1540 const auto secondary_subd_id = pr.second;
1546 const auto pid = el->processor_id();
1553 for (
const auto n :
make_range(el->n_nodes()))
1555 const auto node_id = el->node_id(n);
1556 if (inactive_node_ids.find(node_id) != inactive_node_ids.end())
1557 proc_to_inactive_nodes_set[pid].insert(node_id);
1565 std::unordered_map<processor_id_type, std::vector<dof_id_type>> proc_to_inactive_nodes_vector;
1566 for (
const auto & proc_set : proc_to_inactive_nodes_set)
1567 proc_to_inactive_nodes_vector[proc_set.first].insert(
1568 proc_to_inactive_nodes_vector[proc_set.first].end(),
1569 proc_set.second.begin(),
1570 proc_set.second.end());
1574 const std::vector<dof_id_type> & sent_data)
1577 mooseError(
"Should not be communicating with self.");
1578 for (
const auto pr : sent_data)
1579 inactive_node_ids.insert(pr);
1584 for (
const auto node_id : inactive_node_ids)
1597 std::unordered_map<processor_id_type, std::set<dof_id_type>> proc_to_active_nodes_set;
1601 std::unordered_set<dof_id_type> active_local_nodes;
1610 active_local_nodes.insert(secondary_elem->
node_id(n));
1616 const auto secondary_subd_id = pr.second;
1629 for (
const auto n :
make_range(el->n_nodes()))
1631 const auto node_id = el->node_id(n);
1632 if (active_local_nodes.find(node_id) != active_local_nodes.end())
1633 proc_to_active_nodes_set[pid].insert(node_id);
1641 std::unordered_map<processor_id_type, std::vector<dof_id_type>> proc_to_active_nodes_vector;
1642 for (
const auto & proc_set : proc_to_active_nodes_set)
1644 proc_to_active_nodes_vector[proc_set.first].reserve(proc_to_active_nodes_set.size());
1645 for (
const auto node_id : proc_set.second)
1646 proc_to_active_nodes_vector[proc_set.first].push_back(node_id);
1651 const std::vector<dof_id_type> & sent_data)
1654 mooseError(
"Should not be communicating with self.");
1655 active_local_nodes.insert(sent_data.begin(), sent_data.end());
1666 for (
const auto n :
make_range(el->n_nodes()))
1667 if (active_local_nodes.find(el->node_id(n)) == active_local_nodes.end())
1676 std::unordered_set<const Elem *> active_local_elems;
1682 const Real tol = (
dim() == 3) ? 0.1 : TOLERANCE;
1684 std::unordered_map<const Elem *, Real> active_volume;
1693 active_volume[secondary_elem] += msm_elem->
volume();
1704 if (
abs(active_volume[secondary_elem] / secondary_elem->
volume() - 1.0) > tol)
1708 active_local_elems.insert(secondary_elem);
1716 if (active_local_elems.find(el) == active_local_elems.end())
1734 std::map<dof_id_type, std::vector<std::pair<Point, Real>>> node_to_normals_map;
1742 for (MeshBase::const_element_iterator el =
_mesh.active_elements_begin(),
1743 end_el =
_mesh.active_elements_end();
1747 const Elem * secondary_elem = *el;
1757 nnx_fe_face->attach_quadrature_rule(&qface);
1758 const std::vector<Point> & face_normals = nnx_fe_face->get_normals();
1760 const auto & JxW = nnx_fe_face->get_JxW();
1765 mooseAssert(interior_parent,
1766 "No interior parent exists for element " 1767 << secondary_elem->
id()
1768 <<
". There may be a problem with your sideset set-up.");
1779 nnx_fe_face->reinit(interior_parent, s);
1781 for (MooseIndex(secondary_elem->
n_nodes()) n = 0; n < secondary_elem->
n_nodes(); ++n)
1783 auto & normals_and_weights_vec = node_to_normals_map[secondary_elem->
node_id(n)];
1784 normals_and_weights_vec.push_back(std::make_pair(
sign * face_normals[n], JxW[n]));
1791 for (
const auto & pr : node_to_normals_map)
1794 const auto & node_id = pr.first;
1795 const auto & normals_and_weights_vec = pr.second;
1798 for (
const auto & norm_and_weight : normals_and_weights_vec)
1799 nodal_normal += norm_and_weight.first * norm_and_weight.second;
1800 nodal_normal = nodal_normal.
unit();
1804 Point nodal_tangent_one;
1805 Point nodal_tangent_two;
1815 Point & nodal_tangent_one,
1816 Point & nodal_tangent_two)
const 1820 mooseAssert(MooseUtils::absoluteFuzzyEqual(nodal_normal.
norm(), 1),
1821 "The input nodal normal should have unity norm");
1823 const Real nx = nodal_normal(0);
1824 const Real ny = nodal_normal(1);
1825 const Real nz = nodal_normal(2);
1830 const Point h_vector(nx + 1.0, ny, nz);
1835 if (
abs(h_vector(0)) < TOLERANCE)
1837 nodal_tangent_one(0) = 0;
1838 nodal_tangent_one(1) = 1;
1839 nodal_tangent_one(2) = 0;
1841 nodal_tangent_two(0) = 0;
1842 nodal_tangent_two(1) = 0;
1843 nodal_tangent_two(2) = -1;
1850 nodal_tangent_one(0) = -2.0 * h_vector(0) * h_vector(1) / (h * h);
1851 nodal_tangent_one(1) = 1.0 - 2.0 * h_vector(1) * h_vector(1) / (h * h);
1852 nodal_tangent_one(2) = -2.0 * h_vector(1) * h_vector(2) / (h * h);
1854 nodal_tangent_two(0) = -2.0 * h_vector(0) * h_vector(2) / (h * h);
1855 nodal_tangent_two(1) = -2.0 * h_vector(1) * h_vector(2) / (h * h);
1856 nodal_tangent_two(2) = 1.0 - 2.0 * h_vector(2) * h_vector(2) / (h * h);
1872 const Node & secondary_node,
1873 const Node & primary_node,
1874 const std::vector<const Elem *> * secondary_node_neighbors,
1875 const std::vector<const Elem *> * primary_node_neighbors,
1877 const Elem & candidate_element,
1878 std::set<const Elem *> & rejected_elem_candidates)
1880 if (!secondary_node_neighbors)
1882 if (!primary_node_neighbors)
1885 std::vector<bool> primary_elems_mapped(primary_node_neighbors->size(),
false);
1913 std::array<Real, 2> secondary_node_neighbor_cps, primary_node_neighbor_cps;
1915 for (
const auto nn :
index_range(*secondary_node_neighbors))
1917 const Elem *
const secondary_neigh = (*secondary_node_neighbors)[nn];
1918 const Point opposite = (secondary_neigh->
node_ptr(0) == &secondary_node)
1919 ? secondary_neigh->
point(1)
1920 : secondary_neigh->
point(0);
1921 const Point cp = nodal_normal.
cross(opposite - secondary_node);
1922 secondary_node_neighbor_cps[nn] = cp(2);
1925 for (
const auto nn :
index_range(*primary_node_neighbors))
1927 const Elem *
const primary_neigh = (*primary_node_neighbors)[nn];
1928 const Point opposite = (primary_neigh->
node_ptr(0) == &primary_node) ? primary_neigh->
point(1)
1929 : primary_neigh->
point(0);
1930 const Point cp = nodal_normal.
cross(opposite - primary_node);
1931 primary_node_neighbor_cps[nn] = cp(2);
1935 bool found_match =
false;
1936 for (
const auto snn :
index_range(*secondary_node_neighbors))
1937 for (
const auto mnn :
index_range(*primary_node_neighbors))
1938 if (secondary_node_neighbor_cps[snn] * primary_node_neighbor_cps[mnn] > 0)
1941 if (primary_elems_mapped[mnn])
1943 primary_elems_mapped[mnn] =
true;
1947 const Real xi2 = (&primary_node == (*primary_node_neighbors)[mnn]->node_ptr(0)) ? -1 : +1;
1948 const auto secondary_key =
1949 std::make_pair(&secondary_node, (*secondary_node_neighbors)[snn]);
1950 const auto primary_val = std::make_pair(xi2, (*primary_node_neighbors)[mnn]);
1955 (&secondary_node == (*secondary_node_neighbors)[snn]->node_ptr(0)) ? -1 : +1;
1957 const auto primary_key =
1958 std::make_tuple(primary_node.
id(), &primary_node, (*primary_node_neighbors)[mnn]);
1959 const auto secondary_val = std::make_pair(xi1, (*secondary_node_neighbors)[snn]);
1967 rejected_elem_candidates.insert(&candidate_element);
1974 if (secondary_node_neighbors->size() == 1 && primary_node_neighbors->size() == 2)
1975 for (
const auto i :
index_range(primary_elems_mapped))
1976 if (!primary_elems_mapped[i])
1979 std::make_tuple(primary_node.
id(), &primary_node, (*primary_node_neighbors)[i]),
1980 std::make_pair(1,
nullptr));
1988 SubdomainID lower_dimensional_primary_subdomain_id,
1989 SubdomainID lower_dimensional_secondary_subdomain_id)
1996 3, mesh_adaptor, nanoflann::KDTreeSingleIndexAdaptorParams(10));
1999 kd_tree.buildIndex();
2001 for (MeshBase::const_element_iterator el =
_mesh.active_elements_begin(),
2002 end_el =
_mesh.active_elements_end();
2006 const Elem * secondary_side_elem = *el;
2009 if (secondary_side_elem->
subdomain_id() != lower_dimensional_secondary_subdomain_id)
2016 for (MooseIndex(secondary_side_elem->
n_vertices()) n = 0; n < secondary_side_elem->
n_vertices();
2019 const Node * secondary_node = secondary_side_elem->
node_ptr(n);
2023 const std::vector<const Elem *> & secondary_node_neighbors =
2028 bool is_mapped =
true;
2029 for (MooseIndex(secondary_node_neighbors) snn = 0; snn < secondary_node_neighbors.size();
2032 auto secondary_key = std::make_pair(secondary_node, secondary_node_neighbors[snn]);
2048 std::array<Real, 3> query_pt = {
2049 {(*secondary_node)(0), (*secondary_node)(1), (*secondary_node)(2)}};
2055 const std::size_t num_results = 3;
2058 std::vector<size_t> ret_index(num_results);
2059 std::vector<Real> out_dist_sqr(num_results);
2060 nanoflann::KNNResultSet<Real> result_set(num_results);
2061 result_set.init(&ret_index[0], &out_dist_sqr[0]);
2065 bool projection_succeeded =
false;
2069 std::set<const Elem *> rejected_primary_elem_candidates;
2075 for (MooseIndex(result_set) r = 0; r < result_set.size(); ++r)
2079 out_dist_sqr[r]) <= TOLERANCE,
2080 "Lower-dimensional element squared distance verification failed.");
2084 std::vector<const Elem *> & primary_elem_candidates =
2088 for (MooseIndex(primary_elem_candidates) e = 0; e < primary_elem_candidates.size(); ++e)
2090 const Elem * primary_elem_candidate = primary_elem_candidates[e];
2093 if (rejected_primary_elem_candidates.count(primary_elem_candidate))
2099 unsigned int current_iterate = 0, max_iterates = 10;
2105 for (MooseIndex(primary_elem_candidate->
n_nodes()) n = 0;
2106 n < primary_elem_candidate->
n_nodes();
2110 const auto u = x2 - (*secondary_node);
2111 const auto F = u(0) * nodal_normal(1) - u(1) * nodal_normal(0);
2116 if (F.derivatives())
2118 Real dxi2 = -F.value() / F.derivatives();
2126 current_iterate = max_iterates;
2127 }
while (++current_iterate < max_iterates);
2129 Real xi2 = xi2_dn.value();
2143 (
abs((primary_elem_candidate->
point(0) - primary_elem_candidate->
point(1)).unit() *
2153 const Node * primary_node = (xi2 < 0) ? primary_elem_candidate->
node_ptr(0)
2154 : primary_elem_candidate->
node_ptr(1);
2155 const bool created_mortar_segment =
2158 &secondary_node_neighbors,
2161 *primary_elem_candidate,
2162 rejected_primary_elem_candidates);
2164 if (!created_mortar_segment)
2170 for (MooseIndex(secondary_node_neighbors) nn = 0;
2171 nn < secondary_node_neighbors.size();
2174 const Elem * neigh = secondary_node_neighbors[nn];
2178 if (secondary_node == neigh_node)
2180 auto key = std::make_pair(neigh_node, neigh);
2181 auto val = std::make_pair(xi2, primary_elem_candidate);
2188 projection_succeeded =
true;
2193 rejected_primary_elem_candidates.insert(primary_elem_candidate);
2196 if (projection_succeeded)
2200 if (!projection_succeeded)
2204 _console <<
"Failed to find primary Elem into which secondary node " 2205 <<
static_cast<const Point &
>(*secondary_node) <<
", id '" 2206 << secondary_node->
id() <<
"', projects onto\n" 2225 <<
" secondary nodes were successfully projected\n" 2242 SubdomainID lower_dimensional_primary_subdomain_id,
2243 SubdomainID lower_dimensional_secondary_subdomain_id)
2250 3, mesh_adaptor, nanoflann::KDTreeSingleIndexAdaptorParams(10));
2253 kd_tree.buildIndex();
2255 std::unordered_set<dof_id_type> primary_nodes_visited;
2257 for (
const auto & primary_side_elem :
_mesh.active_element_ptr_range())
2260 if (primary_side_elem->subdomain_id() != lower_dimensional_primary_subdomain_id)
2265 for (MooseIndex(primary_side_elem->n_vertices()) n = 0; n < primary_side_elem->n_vertices();
2269 const Node * primary_node = primary_side_elem->node_ptr(n);
2272 const std::vector<const Elem *> & primary_node_neighbors =
2280 std::make_tuple(primary_node->
id(), primary_node, primary_node_neighbors[0]);
2281 if (!primary_nodes_visited.insert(primary_node->
id()).second ||
2286 Real query_pt[3] = {(*primary_node)(0), (*primary_node)(1), (*primary_node)(2)};
2292 const size_t num_results = 3;
2295 std::vector<size_t> ret_index(num_results);
2296 std::vector<Real> out_dist_sqr(num_results);
2297 nanoflann::KNNResultSet<Real> result_set(num_results);
2298 result_set.init(&ret_index[0], &out_dist_sqr[0]);
2302 bool projection_succeeded =
false;
2307 std::set<const Elem *> rejected_secondary_elem_candidates;
2311 for (MooseIndex(result_set) r = 0; r < result_set.size(); ++r)
2316 "Lower-dimensional element squared distance verification failed.");
2320 const std::vector<const Elem *> & secondary_elem_candidates =
2324 for (MooseIndex(secondary_elem_candidates) e = 0; e < secondary_elem_candidates.size(); ++e)
2326 const Elem * secondary_elem_candidate = secondary_elem_candidates[e];
2329 if (rejected_secondary_elem_candidates.count(secondary_elem_candidate))
2332 std::vector<Point> nodal_normals(secondary_elem_candidate->
n_nodes());
2342 unsigned int current_iterate = 0, max_iterates = 10;
2353 for (MooseIndex(secondary_elem_candidate->
n_nodes()) n = 0;
2354 n < secondary_elem_candidate->
n_nodes();
2358 x1 += phi * secondary_elem_candidate->
point(n);
2359 normals += phi * nodal_normals[n];
2362 const auto u = x1 - (*primary_node);
2364 const auto F = u(0) * normals(1) - u(1) * normals(0);
2372 Real dxi1 = -F.value() / F.derivatives();
2377 }
while (++current_iterate < max_iterates);
2379 Real xi1 = xi1_dn.value();
2383 if ((current_iterate < max_iterates) && (
abs(xi1) <= 1. +
_xi_tolerance) &&
2384 (
abs((primary_side_elem->point(0) - primary_side_elem->point(1)).unit() *
2398 const Node & secondary_node = (xi1 < 0) ? secondary_elem_candidate->
node_ref(0)
2399 : secondary_elem_candidate->
node_ref(1);
2400 bool created_mortar_segment =
false;
2407 &primary_node_neighbors,
2409 *secondary_elem_candidate,
2410 rejected_secondary_elem_candidates);
2412 rejected_secondary_elem_candidates.insert(secondary_elem_candidate);
2414 if (!created_mortar_segment)
2430 const Elem * neigh = primary_node_neighbors[0];
2434 if (primary_node == neigh_node)
2436 auto key = std::make_tuple(neigh_node->
id(), neigh_node, neigh);
2437 auto val = std::make_pair(xi1, secondary_elem_candidate);
2443 projection_succeeded =
true;
2449 rejected_secondary_elem_candidates.insert(secondary_elem_candidate);
2453 if (projection_succeeded)
2457 if (!projection_succeeded &&
_debug)
2459 _console <<
"\nFailed to find point from which primary node " 2460 <<
static_cast<const Point &
>(*primary_node) <<
" was projected." << std::endl
2467 std::vector<AutomaticMortarGeneration::MortarFilterIter>
2474 const auto & secondary_elems = secondary_it->second;
2475 std::vector<MortarFilterIter> ret;
2476 ret.reserve(secondary_elems.size());
2480 auto *
const secondary_elem = secondary_elems[i];
2486 mooseAssert(secondary_elem->active(),
2487 "We loop over active elements when building the mortar segment mesh, so we golly " 2488 "well hope this is active.");
2489 mooseAssert(!msm_it->second.empty(),
2490 "We should have removed all secondaries from this map if they do not have any " 2491 "mortar segments associated with them.");
2492 ret.push_back(msm_it);
virtual T maximum() const
std::set< SubdomainID > _primary_boundary_subdomain_ids
MetaPhysicL::DualNumber< V, D, asd > abs(const MetaPhysicL::DualNumber< V, D, asd > &a)
const Elem * getSecondaryLowerdElemFromSecondaryElem(dof_id_type secondary_elem_id) const
Return lower dimensional secondary element given its interior parent.
T fe_lagrange_2D_shape(const libMesh::ElemType type, const Order order, const unsigned int i, const VectorType< T > &p)
std::unique_ptr< FEGenericBase< Real > > build(const unsigned int dim, const FEType &fet)
unique_id_type & set_unique_id()
std::unordered_set< const Elem * > _inactive_local_lm_elems
List of inactive lagrange multiplier nodes (for elemental variables)
static const std::string name_param
The name of the parameter that contains the object name.
static const std::string app_param
The name of the parameter that contains the MooseApp.
auto norm() const -> decltype(std::norm(Real()))
unsigned int get_node_index(const Node *node_ptr) const
void computeInactiveLMNodes()
Get list of secondary nodes that don't contribute to interaction with any primary element...
std::vector< std::pair< BoundaryID, BoundaryID > > _primary_secondary_boundary_id_pairs
A list of primary/secondary boundary id pairs corresponding to each side of the mortar interface...
const Elem * interior_parent() const
static const std::string type_param
The name of the parameter that contains the object type.
unsigned int _t2x_var_num
void clear()
Clears the mortar segment mesh and accompanying data structures.
void dof_indices(const Elem *const elem, std::vector< dof_id_type > &di) const
std::set< SubdomainID > _secondary_boundary_subdomain_ids
The secondary/primary lower-dimensional boundary subdomain ids are the secondary/primary boundary ids...
void mooseError(Args &&... args)
Emit an error message with the given stringified, concatenated args and terminate the application...
std::unordered_map< dof_id_type, std::set< Elem *, CompareDofObjectsByID > > _secondary_elems_to_mortar_segments
We maintain a mapping from lower-dimensional secondary elements in the original mesh to (sets of) ele...
std::map< unsigned int, unsigned int > getPrimaryIpToLowerElementMap(const Elem &primary_elem, const Elem &primary_elem_ip, const Elem &lower_secondary_elem) const
Compute on-the-fly mapping from primary interior parent nodes to its corresponding lower dimensional ...
unsigned int _t2z_var_num
const bool _periodic
Whether this object will be generating a mortar segment mesh for periodic constraints.
void swap(std::vector< T > &data, const std::size_t idx0, const std::size_t idx1, const libMesh::Parallel::Communicator &comm)
Swap function for serial or distributed vector of data.
unsigned int which_side_am_i(const Elem *e) const
Real _newton_tolerance
Newton solve tolerance for node projections.
void mooseWarning(Args &&... args)
Emit a warning message with the given stringified, concatenated args.
void output() override
Overload this function with the desired output activities.
MortarNodalGeometryOutput(const InputParameters ¶ms)
std::unordered_map< const Elem *, MortarSegmentInfo > _msm_elem_to_info
Map between Elems in the mortar segment mesh and their info structs.
const bool _distributed
Whether the mortar segment mesh is distributed.
Base class for MOOSE-based applications.
void buildMortarSegmentMesh()
Builds the mortar segment mesh once the secondary and primary node projections have been completed...
const Parallel::Communicator & comm() const
void msmStatistics()
Outputs mesh statistics for mortar segment mesh.
unsigned int _nnx_var_num
void buildCouplingInformation()
build the _mortar_interface_coupling data
std::vector< Point > getNodalNormals(const Elem &secondary_elem) const
Special adaptor that works with subdomains of the Mesh.
The following methods are specializations for using the libMesh::Parallel::packed_range_* routines fo...
static const Real invalid_xi
unsigned int _nny_var_num
Specialization of SubProblem for solving nonlinear equations plus auxiliary equations.
FEProblemBase & feProblem() const
unsigned int _nnz_var_num
void projectSecondaryNodes()
Project secondary nodes (find xi^(2) values) to the closest points on the primary surface...
const std::unordered_map< dof_id_type, std::set< Elem *, CompareDofObjectsByID > > & secondariesToMortarSegments() const
std::unordered_set< dof_id_type > _projected_secondary_nodes
Debugging container for printing information about fraction of successful projections for secondary n...
This class is a container/interface for the objects involved in automatic generation of mortar spaces...
const bool _debug
Whether to print debug output.
Based class for output objects.
const Elem * primary_elem
void push_parallel_vector_data(const Communicator &comm, MapToVectors &&data, const ActionFunctor &act_on_data)
uint8_t processor_id_type
std::set< SubdomainID > _secondary_ip_sub_ids
All the secondary interior parent subdomain IDs associated with the mortar mesh.
virtual libMesh::EquationSystems & es()=0
processor_id_type n_processors() const
TypeVector< Real > unit() const
void libmesh_ignore(const Args &...)
void projectPrimaryNodes()
(Inverse) project primary nodes to the points on the secondary surface where they would have come fro...
unsigned int _t1z_var_num
CTSub CT_OPERATOR_BINARY CTMul CTCompareLess CTCompareGreater CTCompareEqual _arg template cos(_arg) *_arg.template D< dtag >()) CT_SIMPLE_UNARY_FUNCTION(cos
const Node & node_ref(const unsigned int i) const
AutomaticMortarGeneration(MooseApp &app, MeshBase &mesh_in, const std::pair< BoundaryID, BoundaryID > &boundary_key, const std::pair< SubdomainID, SubdomainID > &subdomain_key, bool on_displaced, bool periodic, const bool debug, const bool correct_edge_dropping, const Real minimum_projection_angle)
Must be constructed with a reference to the Mesh we are generating mortar spaces for.
virtual unsigned int n_nodes() const=0
unsigned int _t2y_var_num
void buildNodeToElemMaps()
Once the secondary_requested_boundary_ids and primary_requested_boundary_ids containers have been fil...
std::unordered_map< dof_id_type, const Elem * > _secondary_element_to_secondary_lowerd_element
Map from full dimensional secondary element id to lower dimensional secondary element.
virtual void write_equation_systems(const std::string &fname, const EquationSystems &es, const std::set< std::string > *system_names=nullptr) override
std::map< std::tuple< dof_id_type, const Node *, const Elem * >, std::pair< Real, const Elem * > > _primary_node_and_elem_to_xi1_secondary_elem
Same type of container, but for mapping (Primary Node ID, Primary Node, Primary Elem) -> (xi^(1)...
void projectPrimaryNodesSinglePair(SubdomainID lower_dimensional_primary_subdomain_id, SubdomainID lower_dimensional_secondary_subdomain_id)
Helper function used internally by AutomaticMortarGeneration::project_primary_nodes().
std::unordered_map< dof_id_type, std::vector< const Elem * > > _nodes_to_primary_elem_map
SimpleRange< IndexType > as_range(const std::pair< IndexType, IndexType > &p)
const bool _correct_edge_dropping
Flag to enable regressed treatment of edge dropping where all LM DoFs on edge dropping element are st...
bool processAlignedNodes(const Node &secondary_node, const Node &primary_node, const std::vector< const Elem *> *secondary_node_neighbors, const std::vector< const Elem *> *primary_node_neighbors, const VectorValue< Real > &nodal_normal, const Elem &candidate_element, std::set< const Elem *> &rejected_element_candidates)
Process aligned nodes.
An inteface for the _console for outputting to the Console object.
unsigned int _t1y_var_num
std::array< MooseUtils::SemidynamicVector< Point, 9 >, 2 > getNodalTangents(const Elem &secondary_elem) const
Compute the two nodal tangents, which are built on-the-fly.
std::unique_ptr< InputParameters > _output_params
Storage for the input parameters used by the mortar nodal geometry output.
std::set< BoundaryID > _primary_requested_boundary_ids
The boundary ids corresponding to all the primary surfaces.
std::map< unsigned int, unsigned int > getSecondaryIpToLowerElementMap(const Elem &lower_secondary_elem) const
Compute on-the-fly mapping from secondary interior parent nodes to lower dimensional nodes...
TypeVector< typename CompareTypes< Real, T2 >::supertype > cross(const TypeVector< T2 > &v) const
nanoflann::KDTreeSingleIndexAdaptor< subdomain_adatper_t, NanoflannMeshSubdomainAdaptor< 3 >, 3 > subdomain_kd_tree_t
void computeNodalGeometry()
Computes and stores the nodal normal/tangent vectors in a local data structure instead of using the E...
Real _xi_tolerance
Tolerance for checking projection xi values.
static InputParameters validParams()
void computeIncorrectEdgeDroppingInactiveLMNodes()
Computes inactive secondary nodes when incorrect edge dropping behavior is enabled (any node touching...
std::unordered_set< dof_id_type > _failed_secondary_node_projections
Secondary nodes that failed to project.
void buildMortarSegmentMesh3d()
Builds the mortar segment mesh once the secondary and primary node projections have been completed...
const Elem * secondary_elem
void projectSecondaryNodesSinglePair(SubdomainID lower_dimensional_primary_subdomain_id, SubdomainID lower_dimensional_secondary_subdomain_id)
Helper function responsible for projecting secondary nodes onto primary elements for a single primary...
Provides a way for users to bail out of the current solve.
virtual unsigned int n_vertices() const=0
DIE A HORRIBLE DEATH HERE typedef LIBMESH_DEFAULT_SCALAR_TYPE Real
std::unordered_map< std::pair< const Node *, const Elem * >, std::pair< Real, const Elem * > > _secondary_node_and_elem_to_xi2_primary_elem
Similar to the map above, but associates a (Secondary Node, Secondary Elem) pair to a (xi^(2)...
Holds xi^(1), xi^(2), and other data for a given mortar segment.
Generic class for solving transient nonlinear problems.
virtual SimpleRange< element_iterator > active_local_subdomain_elements_ptr_range(subdomain_id_type sid)=0
subdomain_id_type subdomain_id() const
const bool _on_displaced
Whether this object is on the displaced mesh.
const Node * node_ptr(const unsigned int i) const
virtual void write(const std::string &fname) override
void initOutput()
initialize mortar-mesh based output
void addOutput(std::shared_ptr< Output > output)
Adds an existing output object to the warehouse.
virtual Real volume() const
std::unordered_map< const Node *, std::array< Point, 2 > > _secondary_node_to_hh_nodal_tangents
Container for storing the nodal tangent/binormal vectors associated with each secondary node (Househo...
IntRange< T > make_range(T beg, T end)
KOKKOS_INLINE_FUNCTION T sign(T x)
Returns the sign of a value.
unsigned int _t1x_var_num
unsigned int mesh_dimension() const
unsigned int level ElemType type std::set< subdomain_id_type > ss processor_id_type pid unsigned int level std::set< subdomain_id_type > virtual ss SimpleRange< element_iterator > active_subdomain_elements_ptr_range(subdomain_id_type sid)=0
virtual T minimum() const
T fe_lagrange_1D_shape(const Order order, const unsigned int i, const T &xi)
const Real _minimum_projection_angle
Parameter to control which angle (in degrees) is admissible for the creation of mortar segments...
MeshBase & _mesh
Reference to the mesh stored in equation_systems.
virtual const Point & point(const dof_id_type i) const=0
std::vector< std::pair< SubdomainID, SubdomainID > > _primary_secondary_subdomain_id_pairs
A list of primary/secondary subdomain id pairs corresponding to each side of the mortar interface...
const ConsoleStream _console
An instance of helper class to write streams to the Console objects.
SimpleRange< NeighborPtrIter > neighbor_ptr_range()
virtual unsigned int n_sub_elem() const=0
std::set< BoundaryID > _secondary_requested_boundary_ids
The boundary ids corresponding to all the secondary surfaces.
std::unordered_map< const Node *, Point > _secondary_node_to_nodal_normal
Container for storing the nodal normal vector associated with each secondary node.
virtual const Node * node_ptr(const dof_id_type i) const=0
std::unordered_set< const Node * > _inactive_local_lm_nodes
processor_id_type processor_id() const
virtual Order default_order() const=0
std::unordered_map< dof_id_type, std::unordered_set< dof_id_type > > _mortar_interface_coupling
Used by the AugmentSparsityOnInterface functor to determine whether a given Elem is coupled to any ot...
std::set< SubdomainID > _primary_ip_sub_ids
All the primary interior parent subdomain IDs associated with the mortar mesh.
SearchParams SearchParameters
AutomaticMortarGeneration & _amg
The mortar generation object that we will query for nodal normal and tangent information.
void set_hdf5_writing(bool write_hdf5)
processor_id_type processor_id() const
void householderOrthogolization(const Point &normal, Point &tangent_one, Point &tangent_two) const
Householder orthogonalization procedure to obtain proper basis for tangent and binormal vectors...
virtual ElemType type() const=0
dof_id_type node_id(const unsigned int i) const
std::vector< Point > getNormals(const Elem &secondary_elem, const std::vector< Point > &xi1_pts) const
Compute the normals at given reference points on a secondary element.
static InputParameters validParams()
MooseApp & _app
The Moose app.
const Point & point(const unsigned int i) const
std::unique_ptr< MeshBase > _mortar_segment_mesh
1D Mesh of mortar segment elements which gets built by the call to build_mortar_segment_mesh().
auto index_range(const T &sizable)
void set_extra_integer(const unsigned int index, const dof_id_type value)
OutputWarehouse & getOutputWarehouse()
Get the OutputWarehouse objects.
std::unordered_map< dof_id_type, std::vector< const Elem * > > _nodes_to_secondary_elem_map
Map from nodes to connected lower-dimensional elements on the secondary/primary subdomains.
std::unordered_map< const Elem *, unsigned int > _lower_elem_to_side_id
Keeps track of the mapping between lower-dimensional elements and the side_id of the interior_parent ...
void computeInactiveLMElems()
Get list of secondary elems without any corresponding primary elements.
void set_union(T &data, const unsigned int root_id) const