22 #include "libmesh/mesh_tools.h" 23 #include "libmesh/explicit_system.h" 24 #include "libmesh/numeric_vector.h" 25 #include "libmesh/elem.h" 26 #include "libmesh/node.h" 27 #include "libmesh/dof_map.h" 28 #include "libmesh/edge_edge2.h" 29 #include "libmesh/edge_edge3.h" 30 #include "libmesh/face_tri3.h" 31 #include "libmesh/face_tri6.h" 32 #include "libmesh/face_tri7.h" 33 #include "libmesh/face_quad4.h" 34 #include "libmesh/face_quad8.h" 35 #include "libmesh/face_quad9.h" 36 #include "libmesh/exodusII_io.h" 37 #include "libmesh/quadrature_gauss.h" 38 #include "libmesh/quadrature_nodal.h" 39 #include "libmesh/distributed_mesh.h" 40 #include "libmesh/replicated_mesh.h" 41 #include "libmesh/enum_to_string.h" 42 #include "libmesh/statistics.h" 43 #include "libmesh/equation_systems.h" 45 #include "metaphysicl/dualnumber.h" 60 #if NANOFLANN_VERSION < 0x150 74 std::vector<unsigned int>
75 nodalQuadraturePointToSecondaryNodeMap(
const Elem & secondary_elem,
76 const std::vector<Point> & q_points)
82 " points for secondary mortar element ",
85 libMesh::Utility::enum_to_string<ElemType>(secondary_elem.
type()),
86 ", but the element has ",
91 std::vector<unsigned int> qpoint_to_node(
n_nodes, invalid_node);
92 std::vector<bool> node_used(
n_nodes,
false);
94 const Real element_size = secondary_elem.
hmax();
95 mooseAssert(element_size > 0,
96 "Secondary mortar element " 97 << secondary_elem.
id() <<
" of type " 98 << libMesh::Utility::enum_to_string<ElemType>(secondary_elem.
type())
99 <<
" has a non-positive hmax and cannot be used for nodal quadrature point " 107 const Real matching_tol_sq = matching_tol * matching_tol;
112 for (
const auto qp :
make_range(q_points.size()))
114 unsigned int closest_node = invalid_node;
124 if (dist_sq < closest_dist_sq)
126 second_closest_dist_sq = closest_dist_sq;
127 closest_dist_sq = dist_sq;
130 else if (dist_sq < second_closest_dist_sq)
131 second_closest_dist_sq = dist_sq;
134 if (closest_node == invalid_node || closest_dist_sq > matching_tol_sq)
135 mooseError(
"Could not match nodal quadrature point ",
139 " to a node on secondary mortar element ",
142 libMesh::Utility::enum_to_string<ElemType>(secondary_elem.
type()),
143 ". The nearest unmatched node distance is ",
145 ", which exceeds the tolerance ",
149 if (second_closest_dist_sq <= matching_tol_sq)
154 " does not map uniquely to secondary mortar element ",
157 libMesh::Utility::enum_to_string<ElemType>(secondary_elem.
type()),
158 ". Two unmatched nodes are within the matching tolerance ",
162 qpoint_to_node[qp] = closest_node;
163 node_used[closest_node] =
true;
169 std::vector<unsigned int> node_to_qpoint(
n_nodes, invalid_node);
170 for (
const auto qp :
make_range(q_points.size()))
172 const auto mapped_node = qpoint_to_node[qp];
173 mooseAssert(mapped_node != invalid_node && mapped_node <
n_nodes,
174 "Invalid secondary node mapping for nodal quadrature point " << qp <<
".");
175 mooseAssert(node_to_qpoint[mapped_node] == invalid_node,
176 "Secondary node " << mapped_node <<
" on mortar element " << secondary_elem.
id()
177 <<
" was matched to both nodal quadrature point " 178 << node_to_qpoint[mapped_node] <<
" and " << qp <<
".");
179 node_to_qpoint[mapped_node] = qp;
182 unsigned int candidate_count = 0;
183 unsigned int candidate_node = invalid_node;
185 if ((q_points[qp] - secondary_elem.
point(n)).
norm_sq() <= matching_tol_sq)
191 mooseAssert(candidate_count == 1,
192 "Nodal quadrature point " << qp <<
" on mortar element " << secondary_elem.
id()
193 <<
" has " << candidate_count
194 <<
" secondary node candidates within tolerance " 195 << matching_tol <<
".");
196 mooseAssert(candidate_node == mapped_node,
197 "Nodal quadrature point " << qp <<
" on mortar element " << secondary_elem.
id()
198 <<
" was matched to node " << mapped_node
199 <<
", but the full candidate search found node " 200 << candidate_node <<
".");
205 mooseAssert(node_to_qpoint[n] != invalid_node,
206 "Secondary node " << n <<
" on mortar element " << secondary_elem.
id()
207 <<
" was not matched to a nodal quadrature point.");
210 unsigned int candidate_count = 0;
211 unsigned int candidate_qp = invalid_node;
212 for (
const auto qp :
make_range(q_points.size()))
213 if ((q_points[qp] - secondary_elem.
point(n)).
norm_sq() <= matching_tol_sq)
219 mooseAssert(candidate_count == 1,
220 "Secondary node " << n <<
" on mortar element " << secondary_elem.
id() <<
" has " 222 <<
" nodal quadrature point candidates within tolerance " 223 << matching_tol <<
".");
224 mooseAssert(candidate_qp == node_to_qpoint[n],
225 "Secondary node " << n <<
" on mortar element " << secondary_elem.
id()
226 <<
" was matched to nodal quadrature point " << node_to_qpoint[n]
227 <<
", but the full candidate search found point " << candidate_qp
232 return qpoint_to_node;
256 if (_amg._secondary_node_to_nodal_normal.empty() ||
257 _amg._secondary_node_to_hh_nodal_tangents.empty())
258 mooseError(
"No entries found in the secondary node -> nodal geometry map.");
260 auto & problem = _app.feProblem();
261 auto & subproblem = _amg._on_displaced
262 ?
static_cast<SubProblem &
>(*problem.getDisplacedProblem())
263 : static_cast<SubProblem &>(problem);
264 auto & nodal_normals_es = subproblem.
es();
266 const std::string nodal_normals_sys_name =
"nodal_normals";
268 if (!_nodal_normals_system)
270 for (
const auto s :
make_range(nodal_normals_es.n_systems()))
271 if (!nodal_normals_es.get_system(s).is_initialized())
276 _nodal_normals_system =
277 &nodal_normals_es.template add_system<ExplicitSystem>(nodal_normals_sys_name);
278 _nnx_var_num = _nodal_normals_system->add_variable(
"nodal_normal_x",
FEType(
FIRST,
LAGRANGE)),
279 _nny_var_num = _nodal_normals_system->add_variable(
"nodal_normal_y",
FEType(
FIRST,
LAGRANGE));
280 _nnz_var_num = _nodal_normals_system->add_variable(
"nodal_normal_z",
FEType(
FIRST,
LAGRANGE));
295 nodal_normals_es.
reinit();
298 const DofMap & dof_map = _nodal_normals_system->get_dof_map();
299 std::vector<dof_id_type> dof_indices_nnx, dof_indices_nny, dof_indices_nnz;
300 std::vector<dof_id_type> dof_indices_t1x, dof_indices_t1y, dof_indices_t1z;
301 std::vector<dof_id_type> dof_indices_t2x, dof_indices_t2y, dof_indices_t2z;
303 for (MeshBase::const_element_iterator el = _amg._mesh.elements_begin(),
304 end_el = _amg._mesh.elements_end();
308 const Elem * elem = *el;
311 dof_map.
dof_indices(elem, dof_indices_nnx, _nnx_var_num);
312 dof_map.
dof_indices(elem, dof_indices_nny, _nny_var_num);
313 dof_map.
dof_indices(elem, dof_indices_nnz, _nnz_var_num);
315 dof_map.
dof_indices(elem, dof_indices_t1x, _t1x_var_num);
316 dof_map.
dof_indices(elem, dof_indices_t1y, _t1y_var_num);
317 dof_map.
dof_indices(elem, dof_indices_t1z, _t1z_var_num);
319 dof_map.
dof_indices(elem, dof_indices_t2x, _t2x_var_num);
320 dof_map.
dof_indices(elem, dof_indices_t2y, _t2y_var_num);
321 dof_map.
dof_indices(elem, dof_indices_t2z, _t2z_var_num);
329 auto it = _amg._secondary_node_to_nodal_normal.find(elem->
node_ptr(n));
330 if (it != _amg._secondary_node_to_nodal_normal.end())
332 _nodal_normals_system->solution->set(dof_indices_nnx[n], it->second(0));
333 _nodal_normals_system->solution->set(dof_indices_nny[n], it->second(1));
334 _nodal_normals_system->solution->set(dof_indices_nnz[n], it->second(2));
337 auto it_tangent = _amg._secondary_node_to_hh_nodal_tangents.find(elem->
node_ptr(n));
338 if (it_tangent != _amg._secondary_node_to_hh_nodal_tangents.end())
340 _nodal_normals_system->solution->set(dof_indices_t1x[n], it_tangent->second[0](0));
341 _nodal_normals_system->solution->set(dof_indices_t1y[n], it_tangent->second[0](1));
342 _nodal_normals_system->solution->set(dof_indices_t1z[n], it_tangent->second[0](2));
344 _nodal_normals_system->solution->set(dof_indices_t2x[n], it_tangent->second[1](0));
345 _nodal_normals_system->solution->set(dof_indices_t2y[n], it_tangent->second[1](1));
346 _nodal_normals_system->solution->set(dof_indices_t2z[n], it_tangent->second[1](2));
353 _nodal_normals_system->solution->close();
355 std::set<std::string> sys_names = {nodal_normals_sys_name};
364 "nodal_geometry_only.e", nodal_normals_es, &sys_names);
391 const std::pair<BoundaryID, BoundaryID> & boundary_key,
392 const std::pair<SubdomainID, SubdomainID> & subdomain_key,
396 const bool correct_edge_dropping,
397 const Real minimum_projection_angle,
399 const bool triangulate_triangles)
404 _on_displaced(on_displaced),
409 _distributed(_mesh.mesh_dimension() == 3 ? true : (!_on_displaced && !_mesh.is_replicated())),
410 _correct_edge_dropping(correct_edge_dropping),
411 _minimum_projection_angle(minimum_projection_angle),
412 _triangulation_mode(triangulation_mode),
413 _triangulate_triangles(triangulate_triangles)
437 string_vec[2 * i] = std::to_string(primary_bnd_id);
438 string_vec[2 * i + 1] = std::to_string(secondary_bnd_id);
440 string_vec.back() =
_on_displaced ?
"displaced" :
"undisplaced";
441 return MooseUtils::join(string_vec,
"_");
486 "Must specify secondary and primary boundary ids before building node-to-elem maps.");
489 for (
const auto & secondary_elem :
496 for (
const auto & nd : secondary_elem->node_ref_range())
499 vec.push_back(secondary_elem);
504 for (
const auto & primary_elem :
511 for (
const auto & nd : primary_elem->node_ref_range())
514 vec.push_back(primary_elem);
522 std::vector<Point> nodal_normals(secondary_elem.
n_nodes());
526 return nodal_normals;
534 "Map should locate secondary element");
539 std::map<unsigned int, unsigned int>
542 std::map<unsigned int, unsigned int> secondary_ip_i_to_lower_secondary_i;
544 mooseAssert(secondary_ip,
"This should be non-null");
548 const auto & nd = lower_secondary_elem.
node_ref(i);
549 secondary_ip_i_to_lower_secondary_i[secondary_ip->
get_node_index(&nd)] = i;
552 return secondary_ip_i_to_lower_secondary_i;
555 std::map<unsigned int, unsigned int>
557 const Elem & lower_primary_elem,
558 const Elem & primary_elem,
561 std::map<unsigned int, unsigned int> primary_ip_i_to_lower_primary_i;
565 const auto & nd = lower_primary_elem.
node_ref(i);
566 primary_ip_i_to_lower_primary_i[primary_elem.
get_node_index(&nd)] = i;
569 return primary_ip_i_to_lower_primary_i;
572 std::array<MooseUtils::SemidynamicVector<Point, 9>, 2>
576 MooseUtils::SemidynamicVector<Point, 9> nodal_tangents_one(0);
577 MooseUtils::SemidynamicVector<Point, 9> nodal_tangents_two(0);
581 const auto & tangent_vectors =
583 nodal_tangents_one.push_back(tangent_vectors[0]);
584 nodal_tangents_two.push_back(tangent_vectors[1]);
587 return {{nodal_tangents_one, nodal_tangents_two}};
592 const std::vector<Real> & oned_xi1_pts)
const 594 std::vector<Point> xi1_pts(oned_xi1_pts.size());
596 xi1_pts[qp] = oned_xi1_pts[qp];
603 const std::vector<Point> & xi1_pts)
const 606 const auto num_qps = xi1_pts.size();
608 std::vector<Point> normals(num_qps);
620 normals[qp] += phi * nodal_normals[n];
624 for (
auto & normal : normals)
636 std::size_t node_unique_id_offset = 0;
644 const auto primary_bnd_id = pr.first;
645 const auto secondary_bnd_id = pr.second;
646 const auto num_primary_nodes =
647 std::distance(
_mesh.bid_nodes_begin(primary_bnd_id),
_mesh.bid_nodes_end(primary_bnd_id));
648 const auto num_secondary_nodes = std::distance(
_mesh.bid_nodes_begin(secondary_bnd_id),
649 _mesh.bid_nodes_end(secondary_bnd_id));
650 mooseAssert(num_primary_nodes,
651 "There are no primary nodes on boundary ID " 652 << primary_bnd_id <<
". Does that bondary ID even exist on the mesh?");
653 mooseAssert(num_secondary_nodes,
654 "There are no secondary nodes on boundary ID " 655 << secondary_bnd_id <<
". Does that bondary ID even exist on the mesh?");
657 node_unique_id_offset += num_primary_nodes + 2 * num_secondary_nodes;
661 for (MeshBase::const_element_iterator el =
_mesh.active_elements_begin(),
662 end_el =
_mesh.active_elements_end();
666 const Elem * secondary_elem = *el;
672 std::vector<Node *> new_nodes;
673 for (MooseIndex(secondary_elem->
n_nodes()) n = 0; n < secondary_elem->
n_nodes(); ++n)
677 Node *
const new_node = new_nodes.back();
681 std::unique_ptr<Elem> new_elem;
683 new_elem = std::make_unique<Edge3>();
685 new_elem = std::make_unique<Edge2>();
687 new_elem->processor_id() = secondary_elem->
processor_id();
688 new_elem->subdomain_id() = secondary_elem->
subdomain_id();
689 new_elem->set_id(local_id_index++);
690 new_elem->set_unique_id(new_elem->id());
692 for (MooseIndex(new_elem->n_nodes()) n = 0; n < new_elem->n_nodes(); ++n)
693 new_elem->set_node(n, new_nodes[n]);
704 std::make_pair(secondary_elem->
node_ptr(0), secondary_elem)),
706 std::make_pair(secondary_elem->
node_ptr(1), secondary_elem));
708 bool new_container_node0_found =
710 new_container_node1_found =
713 const Elem * node0_primary_candidate =
nullptr;
714 const Elem * node1_primary_candidate =
nullptr;
716 if (new_container_node0_found)
718 const auto & xi2_primary_elem_pair = new_container_it0->second;
719 msinfo.
xi2_a = xi2_primary_elem_pair.first;
720 node0_primary_candidate = xi2_primary_elem_pair.second;
723 if (new_container_node1_found)
725 const auto & xi2_primary_elem_pair = new_container_it1->second;
726 msinfo.
xi2_b = xi2_primary_elem_pair.first;
727 node1_primary_candidate = xi2_primary_elem_pair.second;
734 if (node0_primary_candidate == node1_primary_candidate)
749 auto val = pr.second;
751 const Node * primary_node = std::get<1>(key);
752 Real xi1 = val.first;
753 const Elem * secondary_elem = val.second;
763 for (MooseIndex(secondary_elem->
n_nodes()) n = 0; n < secondary_elem->
n_nodes(); ++n)
768 Elem * current_mortar_segment =
nullptr;
771 for (
const auto & mortar_segment_candidate : mortar_segment_set)
777 catch (std::out_of_range &)
779 mooseError(
"MortarSegmentInfo not found for the mortar segment candidate");
781 if (
info->xi1_a <= xi1 && xi1 <= info->xi1_b)
783 current_mortar_segment = mortar_segment_candidate;
789 if (current_mortar_segment ==
nullptr)
790 mooseError(
"Unable to find appropriate mortar segment during linear search!");
797 if (
info->xi1_a == xi1 || xi1 ==
info->xi1_b)
802 "new_id must be the same on all processes");
803 Node *
const new_node =
805 new_node->set_unique_id(new_id + node_unique_id_offset);
810 const Point normal =
getNormals(*secondary_elem, std::vector<Real>({xi1}))[0];
815 mooseError(
"We should already have built this primary node to elem pair!");
816 const std::vector<const Elem *> & primary_node_neighbors =
820 if (primary_node_neighbors.size() == 0 || primary_node_neighbors.size() > 2)
821 mooseError(
"We must have either 1 or 2 primary side nodal neighbors, but we had ",
822 primary_node_neighbors.size());
829 const Elem * left_primary_elem = primary_node_neighbors[0];
830 const Elem * right_primary_elem =
831 (primary_node_neighbors.size() == 2) ? primary_node_neighbors[1] :
nullptr;
837 std::array<Real, 2> secondary_node_cps;
838 std::vector<Real> primary_node_cps(primary_node_neighbors.size());
841 for (
unsigned int nid = 0; nid < 2; ++nid)
842 secondary_node_cps[nid] = normal.
cross(secondary_elem->
point(nid) - new_pt)(2);
844 for (MooseIndex(primary_node_neighbors) mnn = 0; mnn < primary_node_neighbors.size(); ++mnn)
846 const Elem * primary_neigh = primary_node_neighbors[mnn];
847 Point opposite = (primary_neigh->
node_ptr(0) == primary_node) ? primary_neigh->
point(1)
848 : primary_neigh->
point(0);
850 primary_node_cps[mnn] = cp(2);
854 bool orientation1_valid =
false, orientation2_valid =
false;
856 if (primary_node_neighbors.size() == 2)
859 orientation1_valid = (secondary_node_cps[0] * primary_node_cps[0] > 0.) &&
860 (secondary_node_cps[1] * primary_node_cps[1] > 0.);
862 orientation2_valid = (secondary_node_cps[0] * primary_node_cps[1] > 0.) &&
863 (secondary_node_cps[1] * primary_node_cps[0] > 0.);
865 else if (primary_node_neighbors.size() == 1)
868 orientation1_valid = (secondary_node_cps[0] * primary_node_cps[0] > 0.);
869 orientation2_valid = (secondary_node_cps[1] * primary_node_cps[0] > 0.);
872 mooseError(
"Invalid primary node neighbors size ", primary_node_neighbors.size());
878 if (orientation1_valid && orientation2_valid)
880 "AutomaticMortarGeneration: Both orientations cannot simultaneously be valid.");
886 if (!orientation1_valid && !orientation2_valid)
889 "AutomaticMortarGeneration: Unable to determine valid secondary-primary orientation. " 890 "Consequently we will consider projection of the primary node invalid and not split the " 892 "This situation can indicate there are very oblique projections between primary (mortar) " 893 "and secondary (non-mortar) surfaces for a good problem set up. It can also mean your " 894 "time step is too large. This message is only printed once."));
899 std::unique_ptr<Elem> new_elem_left;
901 new_elem_left = std::make_unique<Edge3>();
903 new_elem_left = std::make_unique<Edge2>();
905 new_elem_left->processor_id() = current_mortar_segment->
processor_id();
906 new_elem_left->subdomain_id() = current_mortar_segment->
subdomain_id();
907 new_elem_left->set_id(local_id_index++);
908 new_elem_left->set_unique_id(new_elem_left->id());
909 new_elem_left->set_node(0, current_mortar_segment->
node_ptr(0));
910 new_elem_left->set_node(1, new_node);
913 std::unique_ptr<Elem> new_elem_right;
915 new_elem_right = std::make_unique<Edge3>();
917 new_elem_right = std::make_unique<Edge2>();
919 new_elem_right->processor_id() = current_mortar_segment->
processor_id();
920 new_elem_right->subdomain_id() = current_mortar_segment->
subdomain_id();
921 new_elem_right->set_id(local_id_index++);
922 new_elem_right->set_unique_id(new_elem_right->id());
923 new_elem_right->set_node(0, new_node);
924 new_elem_right->set_node(1, current_mortar_segment->
node_ptr(1));
929 Point left_interior_point(0);
930 Real left_interior_xi = (xi1 +
info->xi1_a) / 2;
933 Real current_left_interior_eta =
934 (2. * left_interior_xi -
info->xi1_a -
info->xi1_b) / (
info->xi1_b -
info->xi1_a);
936 for (MooseIndex(current_mortar_segment->
n_nodes()) n = 0;
937 n < current_mortar_segment->
n_nodes();
940 current_mortar_segment->
point(n);
944 "new_id must be the same on all processes");
946 left_interior_point, new_interior_left_id, new_elem_left->processor_id());
947 new_elem_left->set_node(2, new_interior_node_left);
948 new_interior_node_left->set_unique_id(new_interior_left_id + node_unique_id_offset);
951 Point right_interior_point(0);
952 Real right_interior_xi = (xi1 +
info->xi1_b) / 2;
954 Real current_right_interior_eta =
955 (2. * right_interior_xi -
info->xi1_a -
info->xi1_b) / (
info->xi1_b -
info->xi1_a);
957 for (MooseIndex(current_mortar_segment->
n_nodes()) n = 0;
958 n < current_mortar_segment->
n_nodes();
961 current_mortar_segment->
point(n);
965 "new_id must be the same on all processes");
967 right_interior_point, new_interior_id_right, new_elem_right->processor_id());
968 new_elem_right->set_node(2, new_interior_node_right);
969 new_interior_node_right->set_unique_id(new_interior_id_right + node_unique_id_offset);
973 if (orientation2_valid)
974 std::swap(left_primary_elem, right_primary_elem);
978 if (left_primary_elem)
979 left_xi2 = (primary_node == left_primary_elem->
node_ptr(0)) ? -1 : +1;
980 if (right_primary_elem)
981 right_xi2 = (primary_node == right_primary_elem->
node_ptr(0)) ? -1 : +1;
990 mooseError(
"MortarSegmentInfo not found for current_mortar_segment.");
1003 new_msinfo_left.
xi1_a = current_msinfo.
xi1_a;
1004 new_msinfo_left.
xi2_a = current_msinfo.
xi2_a;
1006 new_msinfo_left.
xi1_b = xi1;
1007 new_msinfo_left.
xi2_b = left_xi2;
1015 mortar_segment_set.insert(msm_new_elem);
1025 new_msinfo_right.
xi1_b = current_msinfo.
xi1_b;
1026 new_msinfo_right.
xi2_b = current_msinfo.
xi2_b;
1028 new_msinfo_right.
xi1_a = xi1;
1029 new_msinfo_right.
xi2_a = right_xi2;
1034 mortar_segment_set.insert(msm_new_elem);
1042 mortar_segment_set.erase(current_mortar_segment);
1059 if (primary_elem ==
nullptr ||
abs(msinfo.
xi2_a) > 1.0 + TOLERANCE ||
1060 abs(msinfo.
xi2_b) > 1.0 + TOLERANCE)
1065 "We should have found the element");
1066 auto & msm_set = it->second;
1067 msm_set.erase(msm_elem);
1074 if (msm_set.empty())
1090 std::unordered_set<Node *> msm_connected_nodes;
1095 for (
auto & n : element->node_ref_range())
1096 msm_connected_nodes.insert(&n);
1099 if (!msm_connected_nodes.count(node))
1108 "All mortar segment elements should have valid " 1109 "primary element.");
1130 std::array<std::string, 3> file_pieces = {
1133 "mortar_segment_mesh.e"};
1134 mortar_segment_mesh_writer.
write(MooseUtils::join(file_pieces,
"_"));
1152 dof_id_type local_secondary_sub_elems = 0, visible_primary_sub_elems = 0;
1155 for (
const auto *
const el :
1157 local_secondary_sub_elems += el->n_sub_elem();
1159 visible_primary_sub_elems += el->n_sub_elem();
1161 const dof_id_type per_rank_bound = local_secondary_sub_elems * visible_primary_sub_elems * 9;
1162 std::vector<dof_id_type> per_rank_bounds;
1166 start += per_rank_bounds[r];
1178 const auto primary_subd_id = pr.first;
1179 const auto secondary_subd_id = pr.second;
1184 3, mesh_adaptor, nanoflann::KDTreeSingleIndexAdaptorParams(10));
1187 kd_tree.buildIndex();
1191 auto get_sub_elem_nodes = [](
const ElemType type,
1192 const unsigned int sub_elem) -> std::vector<unsigned int>
1199 return {{0, 1, 2, 3}};
1213 mooseError(
"get_sub_elem_nodes: Invalid sub_elem: ", sub_elem);
1227 return {{4, 5, 6, 7}};
1229 mooseError(
"get_sub_elem_nodes: Invalid sub_elem: ", sub_elem);
1235 return {{0, 4, 8, 7}};
1237 return {{4, 1, 5, 8}};
1239 return {{8, 5, 2, 6}};
1241 return {{7, 8, 6, 3}};
1243 mooseError(
"get_sub_elem_nodes: Invalid sub_elem: ", sub_elem);
1246 mooseError(
"get_sub_elem_inds: Face element type: ",
1247 libMesh::Utility::enum_to_string<ElemType>(type),
1248 " invalid for 3D mortar");
1255 for (MeshBase::const_element_iterator el =
_mesh.active_local_elements_begin(),
1256 end_el =
_mesh.active_local_elements_end();
1260 const Elem * secondary_side_elem = *el;
1262 const Real secondary_volume = secondary_side_elem->
volume();
1265 if (secondary_side_elem->
subdomain_id() != secondary_subd_id)
1268 auto [secondary_elem_to_msm_map_it, insertion_happened] =
1270 std::set<Elem *, CompareDofObjectsByID>{});
1272 auto & secondary_to_msm_element_set = secondary_elem_to_msm_map_it->second;
1274 std::vector<std::unique_ptr<MortarSegmentHelper>> mortar_segment_helper(
1291 auto sub_elem_nodes = get_sub_elem_nodes(secondary_side_elem->
type(), sel);
1296 std::vector<Point> nodes(sub_elem_nodes.size());
1299 for (
auto iv :
make_range(sub_elem_nodes.size()))
1301 const auto n = sub_elem_nodes[iv];
1302 nodes[iv] = secondary_side_elem->
point(n);
1303 center += secondary_side_elem->
point(n);
1304 normal += nodal_normals[n];
1306 center /= sub_elem_nodes.size();
1307 normal = normal.
unit();
1310 mortar_segment_helper[sel] = std::make_unique<MortarSegmentHelper>(
1322 std::array<Real, 3> query_pt;
1324 switch (secondary_side_elem->
type())
1328 center_point = mortar_segment_helper[0]->center();
1329 query_pt = {{center_point(0), center_point(1), center_point(2)}};
1333 center_point = mortar_segment_helper[1]->center();
1334 query_pt = {{center_point(0), center_point(1), center_point(2)}};
1337 center_point = mortar_segment_helper[4]->center();
1338 query_pt = {{center_point(0), center_point(1), center_point(2)}};
1341 center_point = secondary_side_elem->
point(8);
1342 query_pt = {{center_point(0), center_point(1), center_point(2)}};
1346 "Face element type: ", secondary_side_elem->
type(),
"not supported for 3D mortar");
1352 const std::size_t num_results = 3;
1355 std::vector<size_t> ret_index(num_results);
1356 std::vector<Real> out_dist_sqr(num_results);
1357 nanoflann::KNNResultSet<Real> result_set(num_results);
1358 result_set.init(&ret_index[0], &out_dist_sqr[0]);
1362 std::set<const Elem *, CompareDofObjectsByID> processed_primary_elems;
1366 bool primary_elem_found =
false;
1367 std::set<const Elem *, CompareDofObjectsByID> primary_elem_candidates;
1375 "Lower-dimensional element squared distance verification failed.");
1378 std::vector<const Elem *> & node_elems =
1382 for (
auto elem : node_elems)
1383 primary_elem_candidates.insert(elem);
1393 while (!primary_elem_candidates.empty())
1395 const Elem * primary_elem_candidate = *primary_elem_candidates.begin();
1398 if (processed_primary_elems.count(primary_elem_candidate))
1402 std::vector<Point> nodal_points;
1405 std::vector<std::vector<unsigned int>> elem_to_node_map;
1408 std::vector<std::pair<unsigned int, unsigned int>> sub_elem_map;
1417 auto sub_elem_nodes = get_sub_elem_nodes(primary_elem_candidate->
type(), p_el);
1420 std::vector<Point> primary_sub_elem(sub_elem_nodes.size());
1421 for (
auto iv :
make_range(sub_elem_nodes.size()))
1423 const auto n = sub_elem_nodes[iv];
1424 primary_sub_elem[iv] = primary_elem_candidate->
point(n);
1437 mortar_segment_helper[s_el]->getMortarSegments(
1438 primary_sub_elem, nodal_points, elem_to_node_map);
1441 for (
auto i = sub_elem_map.size(); i < elem_to_node_map.size(); ++i)
1442 sub_elem_map.push_back(std::make_pair(s_el, p_el));
1447 processed_primary_elems.insert(primary_elem_candidate);
1448 primary_elem_candidates.erase(primary_elem_candidate);
1451 if (!elem_to_node_map.empty())
1456 if (!primary_elem_found)
1458 primary_elem_found =
true;
1459 primary_elem_candidates.clear();
1466 if (neighbor ==
nullptr || neighbor->subdomain_id() != primary_subd_id)
1469 if (processed_primary_elems.count(neighbor))
1472 primary_elem_candidates.insert(neighbor);
1478 std::vector<Node *> new_nodes;
1479 for (
auto pt : nodal_points)
1481 pt, next_node_id++, secondary_side_elem->
processor_id()));
1487 std::unique_ptr<Elem> new_elem;
1488 if (elem_to_node_map[el].size() == 3)
1489 new_elem = std::make_unique<Tri3>();
1491 mooseError(
"Active mortar segments only supports TRI elements, 3 nodes expected " 1493 elem_to_node_map[el].size(),
1496 new_elem->processor_id() = secondary_side_elem->
processor_id();
1497 new_elem->subdomain_id() = secondary_side_elem->
subdomain_id();
1498 new_elem->set_id(next_elem_id++);
1502 new_elem->set_node(i, new_nodes[elem_to_node_map[el][i]]);
1505 if (new_elem->volume() / secondary_volume < TOLERANCE)
1523 secondary_to_msm_element_set.insert(msm_new_elem);
1537 if (mortar_segment_helper[sel]->remainder() == 1.0)
1539 mooseWarning(
"Some secondary elements on mortar interface were unable to identify" 1540 " a corresponding primary element; this may be expected depending on" 1541 " problem geometry but may indicate a failure of the element search" 1545 if (secondary_to_msm_element_set.empty())
1562 if (msm_el->type() !=
TRI3)
1563 msm_el->subdomain_id()++;
1569 if (msm_el->type() !=
TRI3)
1570 msm_el->subdomain_id()--;
1585 std::unordered_map<processor_id_type, std::vector<std::pair<dof_id_type, dof_id_type>>>
1596 const Elem * secondary_elem = pr.second.secondary_elem;
1597 const Elem * primary_elem = pr.second.primary_elem;
1600 coupling_info[secondary_elem->
processor_id()].emplace_back(
1609 coupling_info[secondary_elem->
processor_id()].emplace_back(
1618 coupling_info[secondary_elem->
processor_id()].emplace_back(secondary_elem->
id(),
1619 primary_elem->
id());
1643 auto action_functor =
1645 const std::vector<std::pair<dof_id_type, dof_id_type>> & coupling_info)
1647 for (
auto [i, j] : coupling_info)
1653 std::vector<AutomaticMortarGeneration::MsmSubdomainStats>
1656 std::vector<MsmSubdomainStats> result;
1660 std::unordered_map<dof_id_type, Real> primary_elems_to_volume;
1664 for (
const auto *
const secondary_el :
1665 _mesh.active_local_subdomain_element_ptr_range(secondary_subd_id))
1667 secondary.push_back(secondary_el->volume());
1672 for (
const auto *
const msm_elem : it->second)
1674 msm.push_back(msm_elem->volume());
1678 if (msm_info.primary_elem)
1680 if (msm_info.primary_elem->subdomain_id() != primary_subd_id)
1681 mooseError(
"Unhandled primary-secondary pairing when computing mortar segment " 1682 "statistics. This could happen if you have the same secondary " 1683 "lower-dimensional subdomain ID paired with multiple lower-dimensional " 1684 "primary subdomain IDs. Contact a MOOSE developer for help.");
1685 if (
const auto [it, inserted] =
1686 primary_elems_to_volume.emplace(msm_info.primary_elem->id(),
Real{});
1688 it->second = msm_info.primary_elem->volume();
1691 MooseUtils::absoluteFuzzyEqual(it->second, msm_info.primary_elem->volume()),
1692 "Volumes should be consistent");
1700 primary.reserve(primary_elems_to_volume.size());
1701 for (
const auto [_,
volume] : primary_elems_to_volume)
1702 primary.push_back(
volume);
1719 result.push_back(stats);
1724 primary_elems_to_volume.clear();
1738 Moose::out <<
"Mortar Interface Statistics:" << std::endl;
1739 for (
const auto & stats : all_stats)
1741 std::vector<std::string> col_names = {
"mesh",
"n_elems",
"max",
"min",
"median"};
1742 std::vector<std::string> subds = {
"secondary_lower",
"primary_lower",
"mortar_segment"};
1743 std::vector<size_t> n_elems = {
1744 stats.secondary_lower_n_elems, stats.primary_lower_n_elems, stats.msm_n_elems};
1745 std::vector<Real> maxs = {
1746 stats.secondary_lower_max_volume, stats.primary_lower_max_volume, stats.msm_max_volume};
1747 std::vector<Real> mins = {
1748 stats.secondary_lower_min_volume, stats.primary_lower_min_volume, stats.msm_min_volume};
1749 std::vector<Real> medians = {stats.secondary_lower_median_volume,
1750 stats.primary_lower_median_volume,
1751 stats.msm_median_volume};
1758 table.
addData<std::string>(col_names[0], subds[i]);
1759 table.
addData<
size_t>(col_names[1], n_elems[i]);
1765 Moose::out <<
"secondary subdomain: " << stats.secondary_subd_id
1766 <<
" \tprimary subdomain: " << stats.primary_subd_id << std::endl;
1783 const Real tol = (
dim() == 3) ? 0.1 : TOLERANCE;
1785 std::unordered_map<processor_id_type, std::set<dof_id_type>> proc_to_inactive_nodes_set;
1789 std::unordered_set<dof_id_type> inactive_node_ids;
1791 std::unordered_map<const Elem *, Real> active_volume{};
1795 active_volume[el] = 0.;
1803 active_volume[secondary_elem] += msm_elem->
volume();
1811 if (
abs(active_volume[el] / el->volume() - 1.0) > tol)
1815 inactive_node_ids.insert(el->node_id(n));
1821 const auto secondary_subd_id = pr.second;
1827 const auto pid = el->processor_id();
1834 for (
const auto n :
make_range(el->n_nodes()))
1836 const auto node_id = el->node_id(n);
1837 if (inactive_node_ids.find(node_id) != inactive_node_ids.end())
1838 proc_to_inactive_nodes_set[pid].insert(node_id);
1846 std::unordered_map<processor_id_type, std::vector<dof_id_type>> proc_to_inactive_nodes_vector;
1847 for (
const auto & proc_set : proc_to_inactive_nodes_set)
1848 proc_to_inactive_nodes_vector[proc_set.first].insert(
1849 proc_to_inactive_nodes_vector[proc_set.first].end(),
1850 proc_set.second.begin(),
1851 proc_set.second.end());
1855 const std::vector<dof_id_type> & sent_data)
1858 mooseError(
"Should not be communicating with self.");
1859 for (
const auto pr : sent_data)
1860 inactive_node_ids.insert(pr);
1865 for (
const auto node_id : inactive_node_ids)
1878 std::unordered_map<processor_id_type, std::set<dof_id_type>> proc_to_active_nodes_set;
1882 std::unordered_set<dof_id_type> active_local_nodes;
1891 active_local_nodes.insert(secondary_elem->
node_id(n));
1897 const auto secondary_subd_id = pr.second;
1910 for (
const auto n :
make_range(el->n_nodes()))
1912 const auto node_id = el->node_id(n);
1913 if (active_local_nodes.find(node_id) != active_local_nodes.end())
1914 proc_to_active_nodes_set[pid].insert(node_id);
1922 std::unordered_map<processor_id_type, std::vector<dof_id_type>> proc_to_active_nodes_vector;
1923 for (
const auto & proc_set : proc_to_active_nodes_set)
1925 proc_to_active_nodes_vector[proc_set.first].reserve(proc_to_active_nodes_set.size());
1926 for (
const auto node_id : proc_set.second)
1927 proc_to_active_nodes_vector[proc_set.first].push_back(node_id);
1932 const std::vector<dof_id_type> & sent_data)
1935 mooseError(
"Should not be communicating with self.");
1936 active_local_nodes.insert(sent_data.begin(), sent_data.end());
1947 for (
const auto n :
make_range(el->n_nodes()))
1948 if (active_local_nodes.find(el->node_id(n)) == active_local_nodes.end())
1957 std::unordered_set<const Elem *> active_local_elems;
1963 const Real tol = (
dim() == 3) ? 0.1 : TOLERANCE;
1965 std::unordered_map<const Elem *, Real> active_volume;
1974 active_volume[secondary_elem] += msm_elem->
volume();
1985 if (
abs(active_volume[secondary_elem] / secondary_elem->
volume() - 1.0) > tol)
1989 active_local_elems.insert(secondary_elem);
1997 if (active_local_elems.find(el) == active_local_elems.end())
2007 mooseAssert(
dim == 2 ||
dim == 3,
2008 "AutomaticMortarGeneration::computeNodalGeometry() is only valid for " 2009 "mortar constraints on 2D or 3D meshes.");
2018 std::map<dof_id_type, std::vector<std::pair<Point, Real>>> node_to_normals_map;
2026 for (MeshBase::const_element_iterator el =
_mesh.active_elements_begin(),
2027 end_el =
_mesh.active_elements_end();
2031 const Elem * secondary_elem = *el;
2041 nnx_fe_face->attach_quadrature_rule(&qface);
2042 const auto & face_normals = nnx_fe_face->get_normals();
2043 const auto & face_points = nnx_fe_face->get_xyz();
2045 const auto & JxW = nnx_fe_face->get_JxW();
2050 mooseAssert(interior_parent,
2051 "No interior parent exists for element " 2052 << secondary_elem->
id()
2053 <<
". There may be a problem with your sideset set-up.");
2064 nnx_fe_face->reinit(interior_parent, s);
2069 const auto qpoint_to_secondary_node =
2070 nodalQuadraturePointToSecondaryNodeMap(*secondary_elem, face_points);
2072 mooseAssert(face_normals.size() == face_points.size() && JxW.size() == face_points.size(),
2073 "Face nodal geometry vectors must have the same size.");
2075 for (
const auto qp :
make_range(face_points.size()))
2077 const auto n = qpoint_to_secondary_node[qp];
2078 auto & normals_and_weights_vec = node_to_normals_map[secondary_elem->
node_id(n)];
2079 normals_and_weights_vec.push_back(std::make_pair(
sign * face_normals[qp], JxW[qp]));
2086 for (
const auto & pr : node_to_normals_map)
2089 const auto & node_id = pr.first;
2090 const auto & normals_and_weights_vec = pr.second;
2093 for (
const auto & norm_and_weight : normals_and_weights_vec)
2094 nodal_normal += norm_and_weight.first * norm_and_weight.second;
2095 nodal_normal = nodal_normal.
unit();
2099 Point nodal_tangent_one;
2100 Point nodal_tangent_two;
2110 Point & nodal_tangent_one,
2111 Point & nodal_tangent_two)
const 2115 mooseAssert(MooseUtils::absoluteFuzzyEqual(nodal_normal.
norm(), 1),
2116 "The input nodal normal should have unity norm");
2118 const Real nx = nodal_normal(0);
2119 const Real ny = nodal_normal(1);
2120 const Real nz = nodal_normal(2);
2125 const Point h_vector(nx + 1.0, ny, nz);
2130 if (
abs(h_vector(0)) < TOLERANCE)
2132 nodal_tangent_one(0) = 0;
2133 nodal_tangent_one(1) = 1;
2134 nodal_tangent_one(2) = 0;
2136 nodal_tangent_two(0) = 0;
2137 nodal_tangent_two(1) = 0;
2138 nodal_tangent_two(2) = -1;
2145 nodal_tangent_one(0) = -2.0 * h_vector(0) * h_vector(1) / (h * h);
2146 nodal_tangent_one(1) = 1.0 - 2.0 * h_vector(1) * h_vector(1) / (h * h);
2147 nodal_tangent_one(2) = -2.0 * h_vector(1) * h_vector(2) / (h * h);
2149 nodal_tangent_two(0) = -2.0 * h_vector(0) * h_vector(2) / (h * h);
2150 nodal_tangent_two(1) = -2.0 * h_vector(1) * h_vector(2) / (h * h);
2151 nodal_tangent_two(2) = 1.0 - 2.0 * h_vector(2) * h_vector(2) / (h * h);
2167 const Node & secondary_node,
2168 const Node & primary_node,
2169 const std::vector<const Elem *> * secondary_node_neighbors,
2170 const std::vector<const Elem *> * primary_node_neighbors,
2172 const Elem & candidate_element,
2173 std::set<const Elem *> & rejected_elem_candidates)
2175 if (!secondary_node_neighbors)
2177 if (!primary_node_neighbors)
2180 std::vector<bool> primary_elems_mapped(primary_node_neighbors->size(),
false);
2208 std::array<Real, 2> secondary_node_neighbor_cps, primary_node_neighbor_cps;
2210 for (
const auto nn :
index_range(*secondary_node_neighbors))
2212 const Elem *
const secondary_neigh = (*secondary_node_neighbors)[nn];
2213 const Point opposite = (secondary_neigh->
node_ptr(0) == &secondary_node)
2214 ? secondary_neigh->
point(1)
2215 : secondary_neigh->
point(0);
2216 const Point cp = nodal_normal.
cross(opposite - secondary_node);
2217 secondary_node_neighbor_cps[nn] = cp(2);
2220 for (
const auto nn :
index_range(*primary_node_neighbors))
2222 const Elem *
const primary_neigh = (*primary_node_neighbors)[nn];
2223 const Point opposite = (primary_neigh->
node_ptr(0) == &primary_node) ? primary_neigh->
point(1)
2224 : primary_neigh->
point(0);
2225 const Point cp = nodal_normal.
cross(opposite - primary_node);
2226 primary_node_neighbor_cps[nn] = cp(2);
2230 bool found_match =
false;
2231 for (
const auto snn :
index_range(*secondary_node_neighbors))
2232 for (
const auto mnn :
index_range(*primary_node_neighbors))
2233 if (secondary_node_neighbor_cps[snn] * primary_node_neighbor_cps[mnn] > 0)
2236 if (primary_elems_mapped[mnn])
2238 primary_elems_mapped[mnn] =
true;
2242 const Real xi2 = (&primary_node == (*primary_node_neighbors)[mnn]->node_ptr(0)) ? -1 : +1;
2243 const auto secondary_key =
2244 std::make_pair(&secondary_node, (*secondary_node_neighbors)[snn]);
2245 const auto primary_val = std::make_pair(xi2, (*primary_node_neighbors)[mnn]);
2250 (&secondary_node == (*secondary_node_neighbors)[snn]->node_ptr(0)) ? -1 : +1;
2252 const auto primary_key =
2253 std::make_tuple(primary_node.
id(), &primary_node, (*primary_node_neighbors)[mnn]);
2254 const auto secondary_val = std::make_pair(xi1, (*secondary_node_neighbors)[snn]);
2262 rejected_elem_candidates.insert(&candidate_element);
2269 if (secondary_node_neighbors->size() == 1 && primary_node_neighbors->size() == 2)
2270 for (
const auto i :
index_range(primary_elems_mapped))
2271 if (!primary_elems_mapped[i])
2274 std::make_tuple(primary_node.
id(), &primary_node, (*primary_node_neighbors)[i]),
2275 std::make_pair(1,
nullptr));
2283 SubdomainID lower_dimensional_primary_subdomain_id,
2284 SubdomainID lower_dimensional_secondary_subdomain_id)
2291 3, mesh_adaptor, nanoflann::KDTreeSingleIndexAdaptorParams(10));
2294 kd_tree.buildIndex();
2296 for (MeshBase::const_element_iterator el =
_mesh.active_elements_begin(),
2297 end_el =
_mesh.active_elements_end();
2301 const Elem * secondary_side_elem = *el;
2304 if (secondary_side_elem->
subdomain_id() != lower_dimensional_secondary_subdomain_id)
2311 for (MooseIndex(secondary_side_elem->
n_vertices()) n = 0; n < secondary_side_elem->
n_vertices();
2314 const Node * secondary_node = secondary_side_elem->
node_ptr(n);
2318 const std::vector<const Elem *> & secondary_node_neighbors =
2323 bool is_mapped =
true;
2324 for (MooseIndex(secondary_node_neighbors) snn = 0; snn < secondary_node_neighbors.size();
2327 auto secondary_key = std::make_pair(secondary_node, secondary_node_neighbors[snn]);
2343 std::array<Real, 3> query_pt = {
2344 {(*secondary_node)(0), (*secondary_node)(1), (*secondary_node)(2)}};
2350 const std::size_t num_results = 3;
2353 std::vector<size_t> ret_index(num_results);
2354 std::vector<Real> out_dist_sqr(num_results);
2355 nanoflann::KNNResultSet<Real> result_set(num_results);
2356 result_set.init(&ret_index[0], &out_dist_sqr[0]);
2360 bool projection_succeeded =
false;
2364 std::set<const Elem *> rejected_primary_elem_candidates;
2370 for (MooseIndex(result_set) r = 0; r < result_set.size(); ++r)
2374 out_dist_sqr[r]) <= TOLERANCE,
2375 "Lower-dimensional element squared distance verification failed.");
2379 std::vector<const Elem *> & primary_elem_candidates =
2383 for (MooseIndex(primary_elem_candidates) e = 0; e < primary_elem_candidates.size(); ++e)
2385 const Elem * primary_elem_candidate = primary_elem_candidates[e];
2388 if (rejected_primary_elem_candidates.count(primary_elem_candidate))
2394 unsigned int current_iterate = 0, max_iterates = 10;
2400 for (MooseIndex(primary_elem_candidate->
n_nodes()) n = 0;
2401 n < primary_elem_candidate->
n_nodes();
2405 const auto u = x2 - (*secondary_node);
2406 const auto F = u(0) * nodal_normal(1) - u(1) * nodal_normal(0);
2411 if (F.derivatives())
2413 Real dxi2 = -F.value() / F.derivatives();
2421 current_iterate = max_iterates;
2422 }
while (++current_iterate < max_iterates);
2424 Real xi2 = xi2_dn.value();
2438 (
abs((primary_elem_candidate->
point(0) - primary_elem_candidate->
point(1)).unit() *
2448 const Node * primary_node = (xi2 < 0) ? primary_elem_candidate->
node_ptr(0)
2449 : primary_elem_candidate->
node_ptr(1);
2450 const bool created_mortar_segment =
2453 &secondary_node_neighbors,
2456 *primary_elem_candidate,
2457 rejected_primary_elem_candidates);
2459 if (!created_mortar_segment)
2465 for (MooseIndex(secondary_node_neighbors) nn = 0;
2466 nn < secondary_node_neighbors.size();
2469 const Elem * neigh = secondary_node_neighbors[nn];
2473 if (secondary_node == neigh_node)
2475 auto key = std::make_pair(neigh_node, neigh);
2476 auto val = std::make_pair(xi2, primary_elem_candidate);
2483 projection_succeeded =
true;
2488 rejected_primary_elem_candidates.insert(primary_elem_candidate);
2491 if (projection_succeeded)
2495 if (!projection_succeeded)
2499 _console <<
"Failed to find primary Elem into which secondary node " 2500 <<
static_cast<const Point &
>(*secondary_node) <<
", id '" 2501 << secondary_node->
id() <<
"', projects onto\n" 2520 <<
" secondary nodes were successfully projected\n" 2537 SubdomainID lower_dimensional_primary_subdomain_id,
2538 SubdomainID lower_dimensional_secondary_subdomain_id)
2545 3, mesh_adaptor, nanoflann::KDTreeSingleIndexAdaptorParams(10));
2548 kd_tree.buildIndex();
2550 std::unordered_set<dof_id_type> primary_nodes_visited;
2552 for (
const auto & primary_side_elem :
_mesh.active_element_ptr_range())
2555 if (primary_side_elem->subdomain_id() != lower_dimensional_primary_subdomain_id)
2560 for (MooseIndex(primary_side_elem->n_vertices()) n = 0; n < primary_side_elem->n_vertices();
2564 const Node * primary_node = primary_side_elem->node_ptr(n);
2567 const std::vector<const Elem *> & primary_node_neighbors =
2575 std::make_tuple(primary_node->
id(), primary_node, primary_node_neighbors[0]);
2576 if (!primary_nodes_visited.insert(primary_node->
id()).second ||
2581 Real query_pt[3] = {(*primary_node)(0), (*primary_node)(1), (*primary_node)(2)};
2587 const size_t num_results = 3;
2590 std::vector<size_t> ret_index(num_results);
2591 std::vector<Real> out_dist_sqr(num_results);
2592 nanoflann::KNNResultSet<Real> result_set(num_results);
2593 result_set.init(&ret_index[0], &out_dist_sqr[0]);
2597 bool projection_succeeded =
false;
2602 std::set<const Elem *> rejected_secondary_elem_candidates;
2606 for (MooseIndex(result_set) r = 0; r < result_set.size(); ++r)
2611 "Lower-dimensional element squared distance verification failed.");
2615 const std::vector<const Elem *> & secondary_elem_candidates =
2619 for (MooseIndex(secondary_elem_candidates) e = 0; e < secondary_elem_candidates.size(); ++e)
2621 const Elem * secondary_elem_candidate = secondary_elem_candidates[e];
2624 if (rejected_secondary_elem_candidates.count(secondary_elem_candidate))
2627 std::vector<Point> nodal_normals(secondary_elem_candidate->
n_nodes());
2637 unsigned int current_iterate = 0, max_iterates = 10;
2648 for (MooseIndex(secondary_elem_candidate->
n_nodes()) n = 0;
2649 n < secondary_elem_candidate->
n_nodes();
2653 x1 += phi * secondary_elem_candidate->
point(n);
2654 normals += phi * nodal_normals[n];
2657 const auto u = x1 - (*primary_node);
2659 const auto F = u(0) * normals(1) - u(1) * normals(0);
2667 Real dxi1 = -F.value() / F.derivatives();
2672 }
while (++current_iterate < max_iterates);
2674 Real xi1 = xi1_dn.value();
2678 if ((current_iterate < max_iterates) && (
abs(xi1) <= 1. +
_xi_tolerance) &&
2679 (
abs((primary_side_elem->point(0) - primary_side_elem->point(1)).unit() *
2693 const Node & secondary_node = (xi1 < 0) ? secondary_elem_candidate->
node_ref(0)
2694 : secondary_elem_candidate->
node_ref(1);
2695 bool created_mortar_segment =
false;
2702 &primary_node_neighbors,
2704 *secondary_elem_candidate,
2705 rejected_secondary_elem_candidates);
2707 rejected_secondary_elem_candidates.insert(secondary_elem_candidate);
2709 if (!created_mortar_segment)
2725 const Elem * neigh = primary_node_neighbors[0];
2729 if (primary_node == neigh_node)
2731 auto key = std::make_tuple(neigh_node->
id(), neigh_node, neigh);
2732 auto val = std::make_pair(xi1, secondary_elem_candidate);
2738 projection_succeeded =
true;
2744 rejected_secondary_elem_candidates.insert(secondary_elem_candidate);
2748 if (projection_succeeded)
2752 if (!projection_succeeded &&
_debug)
2754 _console <<
"\nFailed to find point from which primary node " 2755 <<
static_cast<const Point &
>(*primary_node) <<
" was projected." << std::endl
2762 std::vector<AutomaticMortarGeneration::MortarFilterIter>
2769 const auto & secondary_elems = secondary_it->second;
2770 std::vector<MortarFilterIter> ret;
2771 ret.reserve(secondary_elems.size());
2775 auto *
const secondary_elem = secondary_elems[i];
2781 mooseAssert(secondary_elem->active(),
2782 "We loop over active elements when building the mortar segment mesh, so we golly " 2783 "well hope this is active.");
2784 mooseAssert(!msm_it->second.empty(),
2785 "We should have removed all secondaries from this map if they do not have any " 2786 "mortar segments associated with them.");
2787 ret.push_back(msm_it);
virtual T maximum() const
std::set< SubdomainID > _primary_boundary_subdomain_ids
MetaPhysicL::DualNumber< V, D, asd > abs(const MetaPhysicL::DualNumber< V, D, asd > &a)
const Elem * getSecondaryLowerdElemFromSecondaryElem(dof_id_type secondary_elem_id) const
Return lower dimensional secondary element given its interior parent.
T fe_lagrange_2D_shape(const libMesh::ElemType type, const Order order, const unsigned int i, const VectorType< T > &p)
std::unique_ptr< FEGenericBase< Real > > build(const unsigned int dim, const FEType &fet)
void allgather(const T &send_data, std::vector< T, A > &recv_data) const
std::unordered_set< const Elem * > _inactive_local_lm_elems
List of inactive lagrange multiplier nodes (for elemental variables)
static const std::string name_param
The name of the parameter that contains the object name.
static const std::string app_param
The name of the parameter that contains the MooseApp.
SubdomainID secondary_subd_id
SubdomainID primary_subd_id
unsigned int get_node_index(const Node *node_ptr) const
void computeInactiveLMNodes()
Get list of secondary nodes that don't contribute to interaction with any primary element...
std::vector< std::pair< BoundaryID, BoundaryID > > _primary_secondary_boundary_id_pairs
A list of primary/secondary boundary id pairs corresponding to each side of the mortar interface...
const Elem * interior_parent() const
static const std::string type_param
The name of the parameter that contains the object type.
Real secondary_lower_min_volume
unsigned int _t2x_var_num
void clear()
Clears the mortar segment mesh and accompanying data structures.
void dof_indices(const Elem *const elem, std::vector< dof_id_type > &di) const
std::set< SubdomainID > _secondary_boundary_subdomain_ids
The secondary/primary lower-dimensional boundary subdomain ids are the secondary/primary boundary ids...
void mooseError(Args &&... args)
Emit an error message with the given stringified, concatenated args and terminate the application...
std::unordered_map< dof_id_type, std::set< Elem *, CompareDofObjectsByID > > _secondary_elems_to_mortar_segments
We maintain a mapping from lower-dimensional secondary elements in the original mesh to (sets of) ele...
std::map< unsigned int, unsigned int > getPrimaryIpToLowerElementMap(const Elem &primary_elem, const Elem &primary_elem_ip, const Elem &lower_secondary_elem) const
Compute on-the-fly mapping from primary interior parent nodes to its corresponding lower dimensional ...
unsigned int _t2z_var_num
static constexpr Real TOLERANCE
const bool _periodic
Whether this object will be generating a mortar segment mesh for periodic constraints.
void swap(std::vector< T > &data, const std::size_t idx0, const std::size_t idx1, const libMesh::Parallel::Communicator &comm)
Swap function for serial or distributed vector of data.
unsigned int which_side_am_i(const Elem *e) const
void outputMortarMesh()
Write the mortar segment mesh to exodus.
Real _newton_tolerance
Newton solve tolerance for node projections.
Real secondary_lower_max_volume
void mooseWarning(Args &&... args)
Emit a warning message with the given stringified, concatenated args.
void output() override
Overload this function with the desired output activities.
std::string getOutputFileBase(bool for_non_moose_build_output=false) const
Get the output file base name.
MortarNodalGeometryOutput(const InputParameters ¶ms)
std::unordered_map< const Elem *, MortarSegmentInfo > _msm_elem_to_info
Map between Elems in the mortar segment mesh and their info structs.
const bool _distributed
Whether the mortar segment mesh is distributed.
Base class for MOOSE-based applications.
void buildMortarSegmentMesh()
Builds the mortar segment mesh once the secondary and primary node projections have been completed...
const Parallel::Communicator & comm() const
void msmStatistics()
Prints mortar segment mesh statistics to console (calls computeMsmStatistics internally) ...
unsigned int _nnx_var_num
void buildCouplingInformation()
build the _mortar_interface_coupling data
std::vector< Point > getNodalNormals(const Elem &secondary_elem) const
Special adaptor that works with subdomains of the Mesh.
The following methods are specializations for using the libMesh::Parallel::packed_range_* routines fo...
static const Real invalid_xi
virtual Real hmax() const
unsigned int _nny_var_num
std::string mortarInterfaceName() const
Specialization of SubProblem for solving nonlinear equations plus auxiliary equations.
FEProblemBase & feProblem() const
unsigned int _nnz_var_num
void projectSecondaryNodes()
Project secondary nodes (find xi^(2) values) to the closest points on the primary surface...
auto max(const L &left, const R &right)
const std::unordered_map< dof_id_type, std::set< Elem *, CompareDofObjectsByID > > & secondariesToMortarSegments() const
std::unordered_set< dof_id_type > _projected_secondary_nodes
Debugging container for printing information about fraction of successful projections for secondary n...
This class is a container/interface for the objects involved in automatic generation of mortar spaces...
const bool _debug
Whether to print debug output.
MortarSegmentTriangulationMode
Statistics for one primary-secondary subdomain pair.
Based class for output objects.
const Elem * primary_elem
void push_parallel_vector_data(const Communicator &comm, MapToVectors &&data, const ActionFunctor &act_on_data)
uint8_t processor_id_type
const bool _triangulate_triangles
Whether already-triangular clipped polygons should still be centroid-subdivided.
std::set< SubdomainID > _secondary_ip_sub_ids
All the secondary interior parent subdomain IDs associated with the mortar mesh.
virtual libMesh::EquationSystems & es()=0
std::optional< dof_id_type > _msm_node_id_start
Cached per-rank starting ID for 3D MSM nodes/elements.
TypeVector< Real > unit() const
void libmesh_ignore(const Args &...)
const dof_id_type n_nodes
Real secondary_lower_median_volume
void projectPrimaryNodes()
(Inverse) project primary nodes to the points on the secondary surface where they would have come fro...
unsigned int _t1z_var_num
AutomaticMortarGeneration(MooseApp &app, MeshBase &mesh_in, const std::pair< BoundaryID, BoundaryID > &boundary_key, const std::pair< SubdomainID, SubdomainID > &subdomain_key, bool on_displaced, bool periodic, const bool debug, const bool correct_edge_dropping, const Real minimum_projection_angle, const MortarSegmentTriangulationMode triangulation_mode, const bool triangulate_triangles)
Must be constructed with a reference to the Mesh we are generating mortar spaces for.
std::size_t primary_lower_n_elems
CTSub CT_OPERATOR_BINARY CTMul CTCompareLess CTCompareGreater CTCompareEqual _arg template cos(_arg) *_arg.template D< dtag >()) CT_SIMPLE_UNARY_FUNCTION(cos
const Node & node_ref(const unsigned int i) const
virtual unsigned int n_nodes() const=0
unsigned int _t2y_var_num
void buildNodeToElemMaps()
Once the secondary_requested_boundary_ids and primary_requested_boundary_ids containers have been fil...
std::unordered_map< dof_id_type, const Elem * > _secondary_element_to_secondary_lowerd_element
Map from full dimensional secondary element id to lower dimensional secondary element.
virtual void write_equation_systems(const std::string &fname, const EquationSystems &es, const std::set< std::string > *system_names=nullptr) override
std::map< std::tuple< dof_id_type, const Node *, const Elem * >, std::pair< Real, const Elem * > > _primary_node_and_elem_to_xi1_secondary_elem
Same type of container, but for mapping (Primary Node ID, Primary Node, Primary Elem) -> (xi^(1)...
void projectPrimaryNodesSinglePair(SubdomainID lower_dimensional_primary_subdomain_id, SubdomainID lower_dimensional_secondary_subdomain_id)
Helper function used internally by AutomaticMortarGeneration::project_primary_nodes().
std::unordered_map< dof_id_type, std::vector< const Elem * > > _nodes_to_primary_elem_map
SimpleRange< IndexType > as_range(const std::pair< IndexType, IndexType > &p)
const bool _correct_edge_dropping
Flag to enable regressed treatment of edge dropping where all LM DoFs on edge dropping element are st...
bool processAlignedNodes(const Node &secondary_node, const Node &primary_node, const std::vector< const Elem *> *secondary_node_neighbors, const std::vector< const Elem *> *primary_node_neighbors, const VectorValue< Real > &nodal_normal, const Elem &candidate_element, std::set< const Elem *> &rejected_element_candidates)
Process aligned nodes.
An inteface for the _console for outputting to the Console object.
unsigned int _t1y_var_num
std::array< MooseUtils::SemidynamicVector< Point, 9 >, 2 > getNodalTangents(const Elem &secondary_elem) const
Compute the two nodal tangents, which are built on-the-fly.
std::unique_ptr< InputParameters > _output_params
Storage for the input parameters used by the mortar nodal geometry output.
std::set< BoundaryID > _primary_requested_boundary_ids
The boundary ids corresponding to all the primary surfaces.
std::map< unsigned int, unsigned int > getSecondaryIpToLowerElementMap(const Elem &lower_secondary_elem) const
Compute on-the-fly mapping from secondary interior parent nodes to lower dimensional nodes...
TypeVector< typename CompareTypes< Real, T2 >::supertype > cross(const TypeVector< T2 > &v) const
nanoflann::KDTreeSingleIndexAdaptor< subdomain_adatper_t, NanoflannMeshSubdomainAdaptor< 3 >, 3 > subdomain_kd_tree_t
void computeNodalGeometry()
Computes and stores the nodal normal/tangent vectors in a local data structure instead of using the E...
Real _xi_tolerance
Tolerance for checking projection xi values.
static InputParameters validParams()
void computeIncorrectEdgeDroppingInactiveLMNodes()
Computes inactive secondary nodes when incorrect edge dropping behavior is enabled (any node touching...
std::unordered_set< dof_id_type > _failed_secondary_node_projections
Secondary nodes that failed to project.
void buildMortarSegmentMesh3d()
Builds the mortar segment mesh once the secondary and primary node projections have been completed...
const Elem * secondary_elem
Real primary_lower_max_volume
void projectSecondaryNodesSinglePair(SubdomainID lower_dimensional_primary_subdomain_id, SubdomainID lower_dimensional_secondary_subdomain_id)
Helper function responsible for projecting secondary nodes onto primary elements for a single primary...
const MortarSegmentTriangulationMode _triangulation_mode
Triangulation mode used for clipped 3D mortar polygons.
Provides a way for users to bail out of the current solve.
void set_unique_id(unique_id_type new_id)
virtual unsigned int n_vertices() const=0
DIE A HORRIBLE DEATH HERE typedef LIBMESH_DEFAULT_SCALAR_TYPE Real
std::unordered_map< std::pair< const Node *, const Elem * >, std::pair< Real, const Elem * > > _secondary_node_and_elem_to_xi2_primary_elem
Similar to the map above, but associates a (Secondary Node, Secondary Elem) pair to a (xi^(2)...
Holds xi^(1), xi^(2), and other data for a given mortar segment.
Real primary_lower_min_volume
Generic class for solving transient nonlinear problems.
virtual SimpleRange< element_iterator > active_local_subdomain_elements_ptr_range(subdomain_id_type sid)=0
subdomain_id_type subdomain_id() const
const bool _on_displaced
Whether this object is on the displaced mesh.
CTSub CT_OPERATOR_BINARY CTMul CTCompareLess CTCompareGreater CTCompareEqual _arg template * sqrt(_arg)) *_arg.template D< dtag >()) CT_SIMPLE_UNARY_FUNCTION(tanh
const Node * node_ptr(const unsigned int i) const
unsigned int spatial_dimension() const
virtual void write(const std::string &fname) override
std::vector< MsmSubdomainStats > computeMsmStatistics()
Computes mortar segment mesh statistics and returns one entry per subdomain pair. ...
void initOutput()
initialize mortar-mesh based output
void addOutput(std::shared_ptr< Output > output)
Adds an existing output object to the warehouse.
virtual Real volume() const
std::unordered_map< const Node *, std::array< Point, 2 > > _secondary_node_to_hh_nodal_tangents
Container for storing the nodal tangent/binormal vectors associated with each secondary node (Househo...
IntRange< T > make_range(T beg, T end)
KOKKOS_INLINE_FUNCTION T sign(T x)
Returns the sign of a value.
unsigned int _t1x_var_num
Real primary_lower_median_volume
unsigned int mesh_dimension() const
unsigned int level ElemType type std::set< subdomain_id_type > ss processor_id_type pid unsigned int level std::set< subdomain_id_type > virtual ss SimpleRange< element_iterator > active_subdomain_elements_ptr_range(subdomain_id_type sid)=0
virtual T minimum() const
std::size_t secondary_lower_n_elems
T fe_lagrange_1D_shape(const Order order, const unsigned int i, const T &xi)
const Real _minimum_projection_angle
Parameter to control which angle (in degrees) is admissible for the creation of mortar segments...
MeshBase & _mesh
Reference to the mesh stored in equation_systems.
virtual const Point & point(const dof_id_type i) const=0
std::vector< std::pair< SubdomainID, SubdomainID > > _primary_secondary_subdomain_id_pairs
A list of primary/secondary subdomain id pairs corresponding to each side of the mortar interface...
const ConsoleStream _console
An instance of helper class to write streams to the Console objects.
SimpleRange< NeighborPtrIter > neighbor_ptr_range()
virtual unsigned int n_sub_elem() const=0
std::set< BoundaryID > _secondary_requested_boundary_ids
The boundary ids corresponding to all the secondary surfaces.
std::unordered_map< const Node *, Point > _secondary_node_to_nodal_normal
Container for storing the nodal normal vector associated with each secondary node.
virtual const Node * node_ptr(const dof_id_type i) const=0
std::unordered_set< const Node * > _inactive_local_lm_nodes
processor_id_type processor_id() const
virtual Order default_order() const=0
std::unordered_map< dof_id_type, std::unordered_set< dof_id_type > > _mortar_interface_coupling
Used by the AugmentSparsityOnInterface functor to determine whether a given Elem is coupled to any ot...
std::set< SubdomainID > _primary_ip_sub_ids
All the primary interior parent subdomain IDs associated with the mortar mesh.
SearchParams SearchParameters
AutomaticMortarGeneration & _amg
The mortar generation object that we will query for nodal normal and tangent information.
void set_hdf5_writing(bool write_hdf5)
processor_id_type processor_id() const
void householderOrthogolization(const Point &normal, Point &tangent_one, Point &tangent_two) const
Householder orthogonalization procedure to obtain proper basis for tangent and binormal vectors...
virtual ElemType type() const=0
dof_id_type node_id(const unsigned int i) const
std::vector< Point > getNormals(const Elem &secondary_elem, const std::vector< Point > &xi1_pts) const
Compute the normals at given reference points on a secondary element.
static InputParameters validParams()
MooseApp & _app
The Moose app.
const Point & point(const unsigned int i) const
std::unique_ptr< MeshBase > _mortar_segment_mesh
1D Mesh of mortar segment elements which gets built by the call to build_mortar_segment_mesh().
auto index_range(const T &sizable)
void set_extra_integer(const unsigned int index, const dof_id_type value)
OutputWarehouse & getOutputWarehouse()
Get the OutputWarehouse objects.
std::unordered_map< dof_id_type, std::vector< const Elem * > > _nodes_to_secondary_elem_map
Map from nodes to connected lower-dimensional elements on the secondary/primary subdomains.
std::unordered_map< const Elem *, unsigned int > _lower_elem_to_side_id
Keeps track of the mapping between lower-dimensional elements and the side_id of the interior_parent ...
void computeInactiveLMElems()
Get list of secondary elems without any corresponding primary elements.
void set_union(T &data, const unsigned int root_id) const