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MooseMesh Class Referenceabstract

MooseMesh wraps a libMesh::Mesh object and enhances its capabilities by caching additional data and storing more state. More...

#include <MooseMesh.h>

Inheritance diagram for MooseMesh:
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Classes

struct  bnd_elem_iterator
 The definition of the bnd_elem_iterator struct. More...
 
struct  bnd_node_iterator
 The definition of the bnd_node_iterator struct. More...
 
struct  const_bnd_elem_iterator
 The definition of the const_bnd_elem_iterator struct. More...
 
struct  const_bnd_node_iterator
 The definition of the const_bnd_node_iterator struct. More...
 
struct  const_elem_info_iterator
 The definition of the const_elem_info_iterator struct. More...
 
struct  const_face_info_iterator
 The definition of the const_face_info_iterator struct. More...
 
struct  elem_info_iterator
 The definition of the elem_info_iterator struct. More...
 
struct  face_info_iterator
 The definition of the face_info_iterator struct. More...
 
struct  MeshType
 
struct  MeshType< libMesh::DistributedMesh >
 
struct  MeshType< libMesh::ReplicatedMesh >
 
struct  SubdomainData
 

Public Types

enum  ParallelType { ParallelType::DEFAULT, ParallelType::REPLICATED, ParallelType::DISTRIBUTED }
 
using PeriodicNodeInfo = std::pair< const Node *, BoundaryID >
 Helper type for building periodic node maps. More...
 
using DataFileParameterType = DataFileName
 The parameter type this interface expects for a data file name. More...
 

Public Member Functions

 MooseMesh (const InputParameters &parameters)
 
 MooseMesh (const MooseMesh &other_mesh)
 
 MooseMesh ()=delete
 
MooseMeshoperator= (const MooseMesh &other_mesh)=delete
 
virtual ~MooseMesh ()
 
virtual MooseMeshclone () const
 Clone method. More...
 
virtual std::unique_ptr< MooseMeshsafeClone () const =0
 A safer version of the clone() method that hands back an allocated object wrapped in a smart pointer. More...
 
void determineUseDistributedMesh ()
 Determine whether to use a distributed mesh. More...
 
std::unique_ptr< MeshBasebuildMeshBaseObject (unsigned int dim=libMesh::invalid_uint)
 Method to construct a libMesh::MeshBase object that is normally set and used by the MooseMesh object during the "init()" phase. More...
 
template<typename T >
std::unique_ptr< T > buildTypedMesh (unsigned int dim=libMesh::invalid_uint)
 Shortcut method to construct a unique pointer to a libMesh mesh instance. More...
 
void setMeshBase (std::unique_ptr< MeshBase > mesh_base)
 Method to set the mesh_base object. More...
 
virtual void init ()
 Initialize the Mesh object. More...
 
virtual void buildMesh ()=0
 Must be overridden by child classes. More...
 
virtual unsigned int dimension () const
 Returns MeshBase::mesh_dimension(), (not MeshBase::spatial_dimension()!) of the underlying libMesh mesh object. More...
 
virtual unsigned int spatialDimension () const
 Returns MeshBase::spatial_dimension. More...
 
virtual unsigned int effectiveSpatialDimension () const
 Returns the effective spatial dimension determined by the coordinates actually used by the mesh. More...
 
unsigned int getBlocksMaxDimension (const std::vector< SubdomainName > &blocks) const
 Returns the maximum element dimension on the given blocks. More...
 
std::vector< BoundaryIDgetBoundaryIDs (const Elem *const elem, const unsigned short int side) const
 Returns a vector of boundary IDs for the requested element on the requested side. More...
 
const ElemgetLowerDElem (const Elem *, unsigned short int) const
 Returns a const pointer to a lower dimensional element that corresponds to a side of a higher dimensional element. More...
 
unsigned int getHigherDSide (const Elem *elem) const
 Returns the local side ID of the interior parent aligned with the lower dimensional element. More...
 
const std::set< BoundaryID > & getBoundaryIDs () const
 Returns a const reference to a set of all user-specified boundary IDs. More...
 
void buildNodeList ()
 Calls BoundaryInfo::build_node_list()/build_side_list() and makes separate copies of Nodes/Elems in those lists. More...
 
void buildBndElemList ()
 
const std::map< dof_id_type, std::vector< dof_id_type > > & nodeToElemMap ()
 If not already created, creates a map from every node to all elements to which they are connected. More...
 
const std::map< dof_id_type, std::vector< dof_id_type > > & nodeToActiveSemilocalElemMap ()
 If not already created, creates a map from every node to all active semilocal elements to which they are connected. More...
 
virtual bnd_node_iterator bndNodesBegin ()
 Return iterators to the beginning/end of the boundary nodes list. More...
 
virtual bnd_node_iterator bndNodesEnd ()
 
virtual bnd_elem_iterator bndElemsBegin ()
 Return iterators to the beginning/end of the boundary elements list. More...
 
virtual bnd_elem_iterator bndElemsEnd ()
 
void buildNodeListFromSideList ()
 Calls BoundaryInfo::build_node_list_from_side_list(). More...
 
void buildSideList (std::vector< dof_id_type > &el, std::vector< unsigned short int > &sl, std::vector< boundary_id_type > &il)
 Calls BoundaryInfo::build_side_list(). More...
 
std::vector< std::tuple< dof_id_type, unsigned short int, boundary_id_type > > buildSideList ()
 As above, but uses the non-deprecated std::tuple interface. More...
 
std::vector< std::tuple< dof_id_type, unsigned short int, boundary_id_type > > buildActiveSideList () const
 Calls BoundaryInfo::build_active_side_list. More...
 
unsigned int sideWithBoundaryID (const Elem *const elem, const BoundaryID boundary_id) const
 Calls BoundaryInfo::side_with_boundary_id(). More...
 
MeshBase::node_iterator localNodesBegin ()
 Calls local_nodes_begin/end() on the underlying libMesh mesh object. More...
 
MeshBase::node_iterator localNodesEnd ()
 
MeshBase::const_node_iterator localNodesBegin () const
 
MeshBase::const_node_iterator localNodesEnd () const
 
MeshBase::element_iterator activeLocalElementsBegin ()
 Calls active_local_nodes_begin/end() on the underlying libMesh mesh object. More...
 
const MeshBase::element_iterator activeLocalElementsEnd ()
 
MeshBase::const_element_iterator activeLocalElementsBegin () const
 
const MeshBase::const_element_iterator activeLocalElementsEnd () const
 
virtual dof_id_type nNodes () const
 Calls n_nodes/elem() on the underlying libMesh mesh object. More...
 
virtual dof_id_type nElem () const
 
virtual dof_id_type nLocalNodes () const
 
virtual dof_id_type nActiveElem () const
 
virtual dof_id_type nActiveLocalElem () const
 
virtual SubdomainID nSubdomains () const
 
virtual unsigned int nPartitions () const
 
virtual bool skipPartitioning () const
 
virtual bool skipNoncriticalPartitioning () const
 
virtual dof_id_type maxNodeId () const
 Calls max_node/elem_id() on the underlying libMesh mesh object. More...
 
virtual dof_id_type maxElemId () const
 
virtual const Nodenode (const dof_id_type i) const
 Various accessors (pointers/references) for Node "i". More...
 
virtual Nodenode (const dof_id_type i)
 
virtual const NodenodeRef (const dof_id_type i) const
 
virtual NodenodeRef (const dof_id_type i)
 
virtual const NodenodePtr (const dof_id_type i) const
 
virtual NodenodePtr (const dof_id_type i)
 
virtual const NodequeryNodePtr (const dof_id_type i) const
 
virtual NodequeryNodePtr (const dof_id_type i)
 
virtual Elemelem (const dof_id_type i)
 Various accessors (pointers/references) for Elem "i". More...
 
virtual const Elemelem (const dof_id_type i) const
 
virtual ElemelemPtr (const dof_id_type i)
 
virtual const ElemelemPtr (const dof_id_type i) const
 
virtual ElemqueryElemPtr (const dof_id_type i)
 
virtual const ElemqueryElemPtr (const dof_id_type i) const
 
bool prepared () const
 Setter/getter for whether the mesh is prepared. More...
 
virtual void prepared (bool state)
 
void needsPrepareForUse ()
 If this method is called, we will call libMesh's prepare_for_use method when we call Moose's prepare method. More...
 
void meshChanged ()
 Declares that the MooseMesh has changed, invalidates cached data and rebuilds caches. More...
 
virtual void onMeshChanged ()
 Declares a callback function that is executed at the conclusion of meshChanged(). More...
 
void cacheChangedLists ()
 Cache information about what elements were refined and coarsened in the previous step. More...
 
ConstElemPointerRangerefinedElementRange () const
 Return a range that is suitable for threaded execution over elements that were just refined. More...
 
ConstElemPointerRangecoarsenedElementRange () const
 Return a range that is suitable for threaded execution over elements that were just coarsened. More...
 
const std::vector< const Elem * > & coarsenedElementChildren (const Elem *elem) const
 Get the newly removed children element ids for an element that was just coarsened. More...
 
void updateActiveSemiLocalNodeRange (std::set< dof_id_type > &ghosted_elems)
 Clears the "semi-local" node list and rebuilds it. More...
 
bool isSemiLocal (Node *const node) const
 Returns true if the node is semi-local. More...
 
const std::unordered_map< boundary_id_type, std::unordered_set< dof_id_type > > & getBoundariesToElems () const
 Returns a map of boundaries to ids of elements on the boundary. More...
 
const std::unordered_map< boundary_id_type, std::unordered_set< dof_id_type > > & getBoundariesToActiveSemiLocalElemIds () const
 Returns a map of boundaries to ids of elements on the boundary. More...
 
std::unordered_set< dof_id_typegetBoundaryActiveSemiLocalElemIds (BoundaryID bid) const
 Return all ids of elements which have a side which is part of a sideset. More...
 
std::unordered_set< dof_id_typegetBoundaryActiveNeighborElemIds (BoundaryID bid) const
 Return all ids of neighbors of elements which have a side which is part of a sideset. More...
 
bool isBoundaryFullyExternalToSubdomains (BoundaryID bid, const std::set< SubdomainID > &blk_group) const
 Returns whether a boundary (given by its id) is not crossing through a group of blocks, by which we mean that elements on both sides of the boundary are in those blocks. More...
 
const std::set< SubdomainID > & meshSubdomains () const
 Returns a read-only reference to the set of subdomains currently present in the Mesh. More...
 
const std::set< BoundaryID > & meshBoundaryIds () const
 Returns a read-only reference to the set of boundary IDs currently present in the Mesh. More...
 
const std::set< BoundaryID > & meshSidesetIds () const
 Returns a read-only reference to the set of sidesets currently present in the Mesh. More...
 
const std::set< BoundaryID > & meshNodesetIds () const
 Returns a read-only reference to the set of nodesets currently present in the Mesh. More...
 
void setBoundaryToNormalMap (std::unique_ptr< std::map< BoundaryID, RealVectorValue >> boundary_map)
 Sets the mapping between BoundaryID and normal vector Is called by AddAllSideSetsByNormals. More...
 
void setBoundaryToNormalMap (std::map< BoundaryID, RealVectorValue > *boundary_map)
 
void setMeshBoundaryIDs (std::set< BoundaryID > boundary_IDs)
 Sets the set of BoundaryIDs Is called by AddAllSideSetsByNormals. More...
 
const RealVectorValuegetNormalByBoundaryID (BoundaryID id) const
 Returns the normal vector associated with a given BoundaryID. More...
 
bool prepare (const MeshBase *mesh_to_clone)
 Calls prepare_for_use() if the underlying MeshBase object isn't prepared, then communicates various boundary information on parallel meshes. More...
 
void update ()
 Calls buildNodeListFromSideList(), buildNodeList(), and buildBndElemList(). More...
 
unsigned int uniformRefineLevel () const
 Returns the level of uniform refinement requested (zero if AMR is disabled). More...
 
void setUniformRefineLevel (unsigned int, bool deletion=true)
 Set uniform refinement level. More...
 
bool skipDeletionRepartitionAfterRefine () const
 Return a flag indicating whether or not we should skip remote deletion and repartition after uniform refinements. More...
 
bool skipRefineWhenUseSplit () const
 Whether or not skip uniform refinements when using a pre-split mesh. More...
 
void addGhostedBoundary (BoundaryID boundary_id)
 This will add the boundary ids to be ghosted to this processor. More...
 
void setGhostedBoundaryInflation (const std::vector< Real > &inflation)
 This sets the inflation amount for the bounding box for each partition for use in ghosting boundaries. More...
 
const std::set< unsigned int > & getGhostedBoundaries () const
 Return a writable reference to the set of ghosted boundary IDs. More...
 
const std::vector< Real > & getGhostedBoundaryInflation () const
 Return a writable reference to the _ghosted_boundaries_inflation vector. More...
 
void ghostGhostedBoundaries ()
 Actually do the ghosting of boundaries that need to be ghosted to this processor. More...
 
void needGhostGhostedBoundaries (bool needghost)
 Whether or not we want to ghost ghosted boundaries. More...
 
unsigned int getPatchSize () const
 Getter for the patch_size parameter. More...
 
unsigned int getGhostingPatchSize () const
 Getter for the ghosting_patch_size parameter. More...
 
unsigned int getMaxLeafSize () const
 Getter for the maximum leaf size parameter. More...
 
void setPatchUpdateStrategy (Moose::PatchUpdateType patch_update_strategy)
 Set the patch size update strategy. More...
 
const Moose::PatchUpdateTypegetPatchUpdateStrategy () const
 Get the current patch update strategy. More...
 
libMesh::BoundingBox getInflatedProcessorBoundingBox (Real inflation_multiplier=0.01) const
 Get a (slightly inflated) processor bounding box. More...
 
 operator libMesh::MeshBase & ()
 Implicit conversion operator from MooseMesh -> libMesh::MeshBase. More...
 
 operator const libMesh::MeshBase & () const
 
MeshBasegetMesh ()
 Accessor for the underlying libMesh Mesh object. More...
 
MeshBase & getMesh (const std::string &name)
 
const MeshBasegetMesh () const
 
const MeshBase & getMesh (const std::string &name) const
 
const MeshBasegetMeshPtr () const
 
const Moose::Kokkos::MeshgetKokkosMesh () const
 Accessor for Kokkos mesh object. More...
 
void printInfo (std::ostream &os=libMesh::out, const unsigned int verbosity=0) const
 Calls print_info() on the underlying Mesh. More...
 
const std::set< SubdomainID > & getNodeBlockIds (const Node &node) const
 Return list of blocks to which the given node belongs. More...
 
const std::vector< dof_id_type > & getNodeList (boundary_id_type nodeset_id) const
 Return a writable reference to a vector of node IDs that belong to nodeset_id. More...
 
const NodeaddUniqueNode (const Point &p, Real tol=1e-6)
 Add a new node to the mesh. More...
 
NodeaddQuadratureNode (const Elem *elem, const unsigned short int side, const unsigned int qp, BoundaryID bid, const Point &point)
 Adds a fictitious "QuadratureNode". More...
 
NodegetQuadratureNode (const Elem *elem, const unsigned short int side, const unsigned int qp)
 Get a specified quadrature node. More...
 
void clearQuadratureNodes ()
 Clear out any existing quadrature nodes. More...
 
BoundaryID getBoundaryID (const BoundaryName &boundary_name) const
 Get the associated BoundaryID for the boundary name. More...
 
std::vector< BoundaryIDgetBoundaryIDs (const std::vector< BoundaryName > &boundary_name, bool generate_unknown=false) const
 Get the associated BoundaryID for the boundary names that are passed in. More...
 
SubdomainID getSubdomainID (const SubdomainName &subdomain_name) const
 Get the associated subdomain ID for the subdomain name. More...
 
std::vector< SubdomainIDgetSubdomainIDs (const std::vector< SubdomainName > &subdomain_names) const
 Get the associated subdomainIDs for the subdomain names that are passed in. More...
 
std::set< SubdomainIDgetSubdomainIDs (const std::set< SubdomainName > &subdomain_names) const
 
void setSubdomainName (SubdomainID subdomain_id, const SubdomainName &name)
 This method sets the name for subdomain_id to name. More...
 
const std::string & getSubdomainName (SubdomainID subdomain_id) const
 Return the name of a block given an id. More...
 
std::vector< SubdomainName > getSubdomainNames (const std::vector< SubdomainID > &subdomain_ids) const
 Get the associated subdomainNames for the subdomain ids that are passed in. More...
 
void setBoundaryName (BoundaryID boundary_id, BoundaryName name)
 This method sets the boundary name of the boundary based on the id parameter. More...
 
const std::string & getBoundaryName (BoundaryID boundary_id)
 Return the name of the boundary given the id. More...
 
void buildPeriodicNodeMap (std::multimap< dof_id_type, dof_id_type > &periodic_node_map, unsigned int var_number, libMesh::PeriodicBoundaries *pbs) const
 This routine builds a multimap of boundary ids to matching boundary ids across all periodic boundaries in the system. More...
 
void buildPeriodicNodeSets (std::map< BoundaryID, std::set< dof_id_type >> &periodic_node_sets, unsigned int var_number, libMesh::PeriodicBoundaries *pbs) const
 This routine builds a datastructure of node ids organized by periodic boundary ids. More...
 
Real dimensionWidth (unsigned int component) const
 Returns the width of the requested dimension. More...
 
bool detectOrthogonalDimRanges (Real tol=1e-6)
 This routine determines whether the Mesh is a regular orthogonal mesh (i.e. More...
 
void addPeriodicVariable (unsigned int var_num, BoundaryID primary, BoundaryID secondary)
 For "regular orthogonal" meshes, determine if variable var_num is periodic with respect to the primary and secondary BoundaryIDs, record this fact in the _periodic_dim data structure. More...
 
bool isTranslatedPeriodic (unsigned int nonlinear_var_num, unsigned int component) const
 Returns whether this generated mesh is periodic in the given dimension for the given variable. More...
 
RealVectorValue minPeriodicVector (unsigned int nonlinear_var_num, Point p, Point q) const
 This function returns the minimum vector between two points on the mesh taking into account periodicity for the given variable number. More...
 
Real minPeriodicDistance (unsigned int nonlinear_var_num, Point p, Point q) const
 This function returns the distance between two points on the mesh taking into account periodicity for the given variable number. More...
 
const std::pair< BoundaryID, BoundaryID > * getPairedBoundaryMapping (unsigned int component)
 This function attempts to return the paired boundary ids for the given component. More...
 
void buildRefinementAndCoarseningMaps (Assembly *assembly)
 Create the refinement and coarsening maps necessary for projection of stateful material properties when using adaptivity. More...
 
const std::vector< std::vector< QpMap > > & getRefinementMap (const Elem &elem, int parent_side, int child, int child_side)
 Get the refinement map for a given element type. More...
 
const std::vector< std::pair< unsigned int, QpMap > > & getCoarseningMap (const Elem &elem, int input_side)
 Get the coarsening map for a given element type. More...
 
void changeBoundaryId (const boundary_id_type old_id, const boundary_id_type new_id, bool delete_prev)
 Change all the boundary IDs for a given side from old_id to new_id. More...
 
const std::set< BoundaryID > & getSubdomainBoundaryIds (const SubdomainID subdomain_id) const
 Get the list of boundary ids associated with the given subdomain id. More...
 
std::set< BoundaryIDgetSubdomainInterfaceBoundaryIds (const SubdomainID subdomain_id) const
 Get the list of boundaries that contact the given subdomain. More...
 
std::set< SubdomainIDgetBoundaryConnectedBlocks (const BoundaryID bid) const
 Get the list of subdomains associated with the given boundary. More...
 
std::set< SubdomainIDgetBoundaryConnectedSecondaryBlocks (const BoundaryID bid) const
 Get the list of subdomains associated with the given boundary of its secondary side. More...
 
std::set< SubdomainIDgetInterfaceConnectedBlocks (const BoundaryID bid) const
 Get the list of subdomains contacting the given boundary. More...
 
const std::set< SubdomainID > & getBlockConnectedBlocks (const SubdomainID subdomain_id) const
 Get the list of subdomains neighboring a given subdomain. More...
 
bool isBoundaryNode (dof_id_type node_id) const
 Returns true if the requested node is in the list of boundary nodes, false otherwise. More...
 
bool isBoundaryNode (dof_id_type node_id, BoundaryID bnd_id) const
 Returns true if the requested node is in the list of boundary nodes for the specified boundary, false otherwise. More...
 
bool isBoundaryElem (dof_id_type elem_id) const
 Returns true if the requested element is in the list of boundary elements, false otherwise. More...
 
bool isBoundaryElem (dof_id_type elem_id, BoundaryID bnd_id) const
 Returns true if the requested element is in the list of boundary elements for the specified boundary, false otherwise. More...
 
void errorIfDistributedMesh (std::string name) const
 Generate a unified error message if the underlying libMesh mesh is a DistributedMesh. More...
 
virtual bool isDistributedMesh () const
 Returns the final Mesh distribution type. More...
 
bool isParallelTypeForced () const
 Tell the user if the distribution was overriden for any reason. More...
 
void setParallelType (ParallelType parallel_type)
 Allow to change parallel type. More...
 
ParallelType getParallelType () const
 
const MooseEnumpartitionerName () const
 
bool isPartitionerForced () const
 Tell the user if the partitioner was overriden for any reason. More...
 
void allowRecovery (bool allow)
 Set whether or not this mesh is allowed to read a recovery file. More...
 
void setCustomPartitioner (libMesh::Partitioner *partitioner)
 Setter for custom partitioner. More...
 
bool isRegularOrthogonal ()
 Getter to query if the mesh was detected to be regular and orthogonal. More...
 
bool hasSecondOrderElements ()
 check if the mesh has SECOND order elements More...
 
virtual std::unique_ptr< libMesh::PointLocatorBasegetPointLocator () const
 Proxy function to get a (sub)PointLocator from either the underlying libMesh mesh (default), or to allow derived meshes to return a custom point locator. More...
 
virtual std::string getFileName () const
 Returns the name of the mesh file read to produce this mesh if any or an empty string otherwise. More...
 
void needsRemoteElemDeletion (bool need_delete)
 Set whether we need to delete remote elements. More...
 
bool needsRemoteElemDeletion () const
 Whether we need to delete remote elements. More...
 
void allowRemoteElementRemoval (bool allow_removal)
 Set whether to allow remote element removal. More...
 
bool allowRemoteElementRemoval () const
 Whether we are allow remote element removal. More...
 
void deleteRemoteElements ()
 Delete remote elements. More...
 
bool hasMeshBase () const
 Whether mesh base object was constructed or not. More...
 
bool hasElementID (const std::string &id_name) const
 Whether mesh has an extra element integer with a given name. More...
 
unsigned int getElementIDIndex (const std::string &id_name) const
 Return the accessing integer for an extra element integer with its name. More...
 
dof_id_type maxElementID (unsigned int elem_id_index) const
 Return the maximum element ID for an extra element integer with its accessing index. More...
 
dof_id_type minElementID (unsigned int elem_id_index) const
 Return the minimum element ID for an extra element integer with its accessing index. More...
 
bool areElemIDsIdentical (const std::string &id_name1, const std::string &id_name2) const
 Whether or not two extra element integers are identical. More...
 
std::set< dof_id_typegetAllElemIDs (unsigned int elem_id_index) const
 Return all the unique element IDs for an extra element integer with its index. More...
 
std::set< dof_id_typegetElemIDsOnBlocks (unsigned int elem_id_index, const std::set< SubdomainID > &blks) const
 Return all the unique element IDs for an extra element integer with its index on a set of subdomains. More...
 
unsigned int getMaxSidesPerElem () const
 Get the maximum number of sides per element. More...
 
unsigned int getMaxNodesPerElem () const
 Get the maximum number of nodes per element. More...
 
unsigned int getMaxNodesPerSide () const
 Get the maximum number of nodes per side. More...
 
std::unordered_map< dof_id_type, std::set< dof_id_type > > getElemIDMapping (const std::string &from_id_name, const std::string &to_id_name) const
 
void cacheFaceInfoVariableOwnership () const
 Cache if variables live on the elements connected by the FaceInfo objects. More...
 
void cacheFVElementalDoFs () const
 Cache the DoF indices for FV variables on each element. More...
 
void computeFiniteVolumeCoords () const
 Compute the face coordinate value for all FaceInfo and ElemInfo objects. More...
 
void isDisplaced (bool is_displaced)
 Set whether this mesh is a displaced mesh. More...
 
bool isDisplaced () const
 whether this mesh is a displaced mesh More...
 
const std::map< boundary_id_type, std::vector< dof_id_type > > & nodeSetNodes () const
 
Moose::CoordinateSystemType getCoordSystem (SubdomainID sid) const
 Get the coordinate system type, e.g. More...
 
Moose::CoordinateSystemType getUniqueCoordSystem () const
 Get the coordinate system from the mesh, it must be the same in all subdomains otherwise this will error. More...
 
const std::map< SubdomainID, Moose::CoordinateSystemType > & getCoordSystem () const
 Get the map from subdomain ID to coordinate system type, e.g. More...
 
void setCoordSystem (const std::vector< SubdomainName > &blocks, const MultiMooseEnum &coord_sys)
 Set the coordinate system for the provided blocks to coord_sys. More...
 
void setAxisymmetricCoordAxis (const MooseEnum &rz_coord_axis)
 For axisymmetric simulations, set the symmetry coordinate axis. More...
 
void setGeneralAxisymmetricCoordAxes (const std::vector< SubdomainName > &blocks, const std::vector< std::pair< Point, RealVectorValue >> &axes)
 Sets the general coordinate axes for axisymmetric blocks. More...
 
const std::pair< Point, RealVectorValue > & getGeneralAxisymmetricCoordAxis (SubdomainID subdomain_id) const
 Gets the general axisymmetric coordinate axis for a block. More...
 
bool usingGeneralAxisymmetricCoordAxes () const
 Returns true if general axisymmetric coordinate axes are being used. More...
 
unsigned int getAxisymmetricRadialCoord () const
 Returns the desired radial direction for RZ coordinate transformation. More...
 
void checkCoordinateSystems ()
 Performs a sanity check for every element in the mesh. More...
 
void setCoordData (const MooseMesh &other_mesh)
 Set the coordinate system data to that of other_mesh. More...
 
void markFiniteVolumeInfoDirty ()
 Mark the finite volume information as dirty. More...
 
bool isFiniteVolumeInfoDirty () const
 
MooseAppCoordTransformcoordTransform ()
 
const MooseUnitslengthUnit () const
 
const std::unordered_map< std::pair< const Elem *, unsigned short int >, const Elem * > & getLowerDElemMap () const
 This function attempts to return the map from a high-order element side to its corresponding lower-d element. More...
 
bool isSplit () const
 
void buildFiniteVolumeInfo () const
 Builds the face and elem info vectors that store meta-data needed for looping over and doing calculations based on mesh faces and elements in a finite volume setting. More...
 
void setupFiniteVolumeMeshData () const
 Sets up the additional data needed for finite volume computations. More...
 
void doingPRefinement (bool doing_p_refinement)
 Indicate whether the kind of adaptivity we're doing is p-refinement. More...
 
bool doingPRefinement () const
 Query whether we have p-refinement. More...
 
unsigned int maxPLevel () const
 Returns the maximum p-refinement level of all elements. More...
 
unsigned int maxHLevel () const
 Returns the maximum h-refinement level of all elements. More...
 
const std::vector< QpMap > & getPRefinementMap (const Elem &elem) const
 Get the map describing for each volumetric quadrature point (qp) on the refined level which qp on the previous coarser level the fine qp is closest to. More...
 
const std::vector< QpMap > & getPRefinementSideMap (const Elem &elem) const
 Get the map describing for each side quadrature point (qp) on the refined level which qp on the previous coarser level the fine qp is closest to. More...
 
const std::vector< QpMap > & getPCoarseningMap (const Elem &elem) const
 Get the map describing for each volumetric quadrature point (qp) on the coarse level which qp on the previous finer level the coarse qp is closest to. More...
 
const std::vector< QpMap > & getPCoarseningSideMap (const Elem &elem) const
 Get the map describing for each side quadrature point (qp) on the coarse level which qp on the previous finer level the coarse qp is closest to. More...
 
void buildPRefinementAndCoarseningMaps (Assembly *assembly)
 
bool isLowerD (const SubdomainID subdomain_id) const
 
bool hasLowerD () const
 
const std::set< SubdomainID > & interiorLowerDBlocks () const
 
const std::set< SubdomainID > & boundaryLowerDBlocks () const
 
bool getConstructNodeListFromSideList ()
 Return construct node list from side list boolean. More...
 
virtual bool enabled () const
 Return the enabled status of the object. More...
 
std::shared_ptr< MooseObjectgetSharedPtr ()
 Get another shared pointer to this object that has the same ownership group. More...
 
std::shared_ptr< const MooseObjectgetSharedPtr () const
 
bool isKokkosObject (IsKokkosObjectKey &&) const
 Get whether this object is a Kokkos functor The parameter is set by the Kokkos base classes: More...
 
MooseAppgetMooseApp () const
 Get the MooseApp this class is associated with. More...
 
const std::string & type () const
 Get the type of this class. More...
 
const std::string & name () const
 Get the name of the class. More...
 
std::string typeAndName () const
 Get the class's combined type and name; useful in error handling. More...
 
MooseObjectParameterName uniqueParameterName (const std::string &parameter_name) const
 
MooseObjectName uniqueName () const
 
const InputParametersparameters () const
 Get the parameters of the object. More...
 
const hit::Node * getHitNode () const
 
bool hasBase () const
 
const std::string & getBase () const
 
template<typename T >
const T & getParam (const std::string &name) const
 Retrieve a parameter for the object. More...
 
template<typename T1 , typename T2 >
std::vector< std::pair< T1, T2 > > getParam (const std::string &param1, const std::string &param2) const
 Retrieve two parameters and provide pair of parameters for the object. More...
 
template<typename T >
const T * queryParam (const std::string &name) const
 Query a parameter for the object. More...
 
template<typename T >
const T & getRenamedParam (const std::string &old_name, const std::string &new_name) const
 Retrieve a renamed parameter for the object. More...
 
template<typename T >
getCheckedPointerParam (const std::string &name, const std::string &error_string="") const
 Verifies that the requested parameter exists and is not NULL and returns it to the caller. More...
 
bool isParamValid (const std::string &name) const
 Test if the supplied parameter is valid. More...
 
bool isParamSetByUser (const std::string &name) const
 Test if the supplied parameter is set by a user, as opposed to not set or set to default. More...
 
void connectControllableParams (const std::string &parameter, const std::string &object_type, const std::string &object_name, const std::string &object_parameter) const
 Connect controllable parameter of this action with the controllable parameters of the objects added by this action. More...
 
template<typename... Args>
void paramError (const std::string &param, Args... args) const
 Emits an error prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message. More...
 
template<typename... Args>
void paramWarning (const std::string &param, Args... args) const
 Emits a warning prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message. More...
 
template<typename... Args>
void paramInfo (const std::string &param, Args... args) const
 Emits an informational message prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message. More...
 
std::string messagePrefix (const bool hit_prefix=true) const
 
std::string errorPrefix (const std::string &) const
 Deprecated message prefix; the error type is no longer used. More...
 
template<typename... Args>
void mooseError (Args &&... args) const
 Emits an error prefixed with object name and type and optionally a file path to the top-level block parameter if available. More...
 
template<typename... Args>
void mooseDocumentedError (const std::string &repo_name, const unsigned int issue_num, Args &&... args) const
 
template<typename... Args>
void mooseErrorNonPrefixed (Args &&... args) const
 Emits an error without the prefixing included in mooseError(). More...
 
template<typename... Args>
void mooseWarning (Args &&... args) const
 Emits a warning prefixed with object name and type. More...
 
template<typename... Args>
void mooseWarningNonPrefixed (Args &&... args) const
 Emits a warning without the prefixing included in mooseWarning(). More...
 
template<typename... Args>
void mooseDeprecated (Args &&... args) const
 
template<typename... Args>
void mooseInfo (Args &&... args) const
 
void callMooseError (std::string msg, const bool with_prefix, const hit::Node *node=nullptr) const
 External method for calling moose error with added object context. More...
 
const Parallel::Communicatorcomm () const
 
processor_id_type n_processors () const
 
processor_id_type processor_id () const
 
std::string getDataFileName (const std::string &param) const
 Deprecated method. More...
 
std::string getDataFileNameByName (const std::string &relative_path) const
 Deprecated method. More...
 
std::string getDataFilePath (const std::string &relative_path) const
 Returns the path of a data file for a given relative file path. More...
 
PerfGraphperfGraph ()
 Get the PerfGraph. More...
 
libMesh::ConstElemRangegetActiveLocalElementRange ()
 Return pointers to range objects for various types of ranges (local nodes, boundary elems, etc.). More...
 
libMesh::NodeRangegetActiveNodeRange ()
 
SemiLocalNodeRangegetActiveSemiLocalNodeRange () const
 
libMesh::ConstNodeRangegetLocalNodeRange ()
 
libMesh::StoredRange< MooseMesh::const_bnd_node_iterator, const BndNode * > * getBoundaryNodeRange ()
 
libMesh::StoredRange< MooseMesh::const_bnd_elem_iterator, const BndElement * > * getBoundaryElementRange ()
 
virtual Real getMinInDimension (unsigned int component) const
 Returns the min or max of the requested dimension respectively. More...
 
virtual Real getMaxInDimension (unsigned int component) const
 
bool isCustomPartitionerRequested () const
 Setter and getter for _custom_partitioner_requested. More...
 
void setIsCustomPartitionerRequested (bool cpr)
 
unsigned int nFace () const
 accessors for the FaceInfo objects More...
 
const std::vector< const FaceInfo * > & faceInfo () const
 Accessor for local FaceInfo objects. More...
 
face_info_iterator ownedFaceInfoBegin ()
 Iterators to owned faceInfo objects. More...
 
face_info_iterator ownedFaceInfoEnd ()
 
elem_info_iterator ownedElemInfoBegin ()
 Iterators to owned faceInfo objects. More...
 
elem_info_iterator ownedElemInfoEnd ()
 
const FaceInfofaceInfo (const Elem *elem, unsigned int side) const
 Accessor for the local FaceInfo object on the side of one element. Returns null if ghosted. More...
 
const ElemInfoelemInfo (const dof_id_type id) const
 Accessor for the elemInfo object for a given element ID. More...
 
const std::vector< const ElemInfo * > & elemInfoVector () const
 Accessor for the element info objects owned by this process. More...
 
const std::vector< FaceInfo > & allFaceInfo () const
 Accessor for all FaceInfo objects. More...
 

Static Public Member Functions

static InputParameters validParams ()
 Typical "Moose-style" constructor and copy constructor. More...
 
static MooseEnum partitioning ()
 returns MooseMesh partitioning options so other classes can use it More...
 
static MooseEnum elemTypes ()
 returns MooseMesh element type options More...
 
static void setSubdomainName (MeshBase &mesh, SubdomainID subdomain_id, const SubdomainName &name)
 This method sets the name for subdomain_id on the provided mesh to name. More...
 
static void changeBoundaryId (MeshBase &mesh, const boundary_id_type old_id, const boundary_id_type new_id, bool delete_prev)
 Change all the boundary IDs for a given side from old_id to new_id for the given mesh. More...
 
static void setPartitioner (MeshBase &mesh_base, MooseEnum &partitioner, bool use_distributed_mesh, const InputParameters &params, MooseObject &context_obj)
 Method for setting the partitioner on the passed in mesh_base object. More...
 
static void callMooseError (MooseApp *const app, const InputParameters &params, std::string msg, const bool with_prefix, const hit::Node *node)
 External method for calling moose error with added object context. More...
 

Public Attributes

const ConsoleStream _console
 An instance of helper class to write streams to the Console objects. More...
 

Static Public Attributes

static const std::string type_param = "_type"
 The name of the parameter that contains the object type. More...
 
static const std::string name_param = "_object_name"
 The name of the parameter that contains the object name. More...
 
static const std::string unique_name_param = "_unique_name"
 The name of the parameter that contains the unique object name. More...
 
static const std::string app_param = "_moose_app"
 The name of the parameter that contains the MooseApp. More...
 
static const std::string moose_base_param = "_moose_base"
 The name of the parameter that contains the moose system base. More...
 
static const std::string kokkos_object_param = "_kokkos_object"
 The name of the parameter that indicates an object is a Kokkos functor. More...
 

Protected Types

enum  { X = 0, Y, Z }
 Convenience enums. More...
 
enum  { MIN = 0, MAX }
 
typedef std::vector< BndNode * >::iterator bnd_node_iterator_imp
 
typedef std::vector< BndNode * >::const_iterator const_bnd_node_iterator_imp
 
typedef std::vector< BndElement * >::iterator bnd_elem_iterator_imp
 
typedef std::vector< BndElement * >::const_iterator const_bnd_elem_iterator_imp
 

Protected Member Functions

void cacheInfo ()
 
void freeBndNodes ()
 
void freeBndElems ()
 
void setPartitionerHelper (MeshBase *mesh=nullptr)
 
template<typename T , typename... Args>
T & declareRestartableData (const std::string &data_name, Args &&... args)
 Declare a piece of data as "restartable" and initialize it. More...
 
template<typename T , typename... Args>
ManagedValue< T > declareManagedRestartableDataWithContext (const std::string &data_name, void *context, Args &&... args)
 Declares a piece of "managed" restartable data and initialize it. More...
 
template<typename T , typename... Args>
const T & getRestartableData (const std::string &data_name) const
 Declare a piece of data as "restartable" and initialize it Similar to declareRestartableData but returns a const reference to the object. More...
 
template<typename T , typename... Args>
T & declareRestartableDataWithContext (const std::string &data_name, void *context, Args &&... args)
 Declare a piece of data as "restartable" and initialize it. More...
 
template<typename T , typename... Args>
T & declareRecoverableData (const std::string &data_name, Args &&... args)
 Declare a piece of data as "recoverable" and initialize it. More...
 
template<typename T , typename... Args>
T & declareRestartableDataWithObjectName (const std::string &data_name, const std::string &object_name, Args &&... args)
 Declare a piece of data as "restartable". More...
 
template<typename T , typename... Args>
T & declareRestartableDataWithObjectNameWithContext (const std::string &data_name, const std::string &object_name, void *context, Args &&... args)
 Declare a piece of data as "restartable". More...
 
std::string restartableName (const std::string &data_name) const
 Gets the name of a piece of restartable data given a data name, adding the system name and object name prefix. More...
 
PerfID registerTimedSection (const std::string &section_name, const unsigned int level) const
 Call to register a named section for timing. More...
 
PerfID registerTimedSection (const std::string &section_name, const unsigned int level, const std::string &live_message, const bool print_dots=true) const
 Call to register a named section for timing. More...
 
std::string timedSectionName (const std::string &section_name) const
 

Protected Attributes

std::vector< std::unique_ptr< libMesh::GhostingFunctor > > _ghosting_functors
 Deprecated (DO NOT USE) More...
 
std::vector< std::shared_ptr< RelationshipManager > > _relationship_managers
 The list of active geometric relationship managers (bound to the underlying MeshBase object). More...
 
bool _built_from_other_mesh = false
 Whether or not this mesh was built from another mesh. More...
 
ParallelType _parallel_type
 Can be set to DISTRIBUTED, REPLICATED, or DEFAULT. More...
 
bool _use_distributed_mesh
 False by default. More...
 
bool _distribution_overridden
 
bool _parallel_type_overridden
 
std::unique_ptr< libMesh::MeshBase_mesh
 Pointer to underlying libMesh mesh object. More...
 
std::unique_ptr< Moose::Kokkos::Mesh_kokkos_mesh
 Pointer to Kokkos mesh object. More...
 
MooseEnum _partitioner_name
 The partitioner used on this mesh. More...
 
bool _partitioner_overridden
 
std::unique_ptr< libMesh::Partitioner_custom_partitioner
 The custom partitioner. More...
 
bool _custom_partitioner_requested
 
unsigned int _uniform_refine_level
 The level of uniform refinement requested (set to zero if AMR is disabled) More...
 
bool _skip_refine_when_use_split
 Whether or not to skip uniform refinements when using a pre-split mesh. More...
 
bool _skip_deletion_repartition_after_refine
 Whether or not skip remote deletion and repartition after uniform refinements. More...
 
bool _is_changed
 true if mesh is changed (i.e. after adaptivity step) More...
 
bool _is_nemesis
 True if a Nemesis Mesh was read in. More...
 
bool _moose_mesh_prepared = false
 True if prepare has been called on the mesh. More...
 
std::unique_ptr< ConstElemPointerRange_refined_elements
 The elements that were just refined. More...
 
std::unique_ptr< ConstElemPointerRange_coarsened_elements
 The elements that were just coarsened. More...
 
std::map< const Elem *, std::vector< const Elem * > > _coarsened_element_children
 Map of Parent elements to child elements for elements that were just coarsened. More...
 
std::set< Node * > _semilocal_node_list
 Used for generating the semilocal node range. More...
 
std::unique_ptr< libMesh::ConstElemRange_active_local_elem_range
 A range for use with threading. More...
 
std::unique_ptr< SemiLocalNodeRange_active_semilocal_node_range
 
std::unique_ptr< libMesh::NodeRange_active_node_range
 
std::unique_ptr< libMesh::ConstNodeRange_local_node_range
 
std::unique_ptr< libMesh::StoredRange< MooseMesh::const_bnd_node_iterator, const BndNode * > > _bnd_node_range
 
std::unique_ptr< libMesh::StoredRange< MooseMesh::const_bnd_elem_iterator, const BndElement * > > _bnd_elem_range
 
std::map< dof_id_type, std::vector< dof_id_type > > _node_to_elem_map
 A map of all of the current nodes to the elements that they are connected to. More...
 
bool _node_to_elem_map_built
 
std::map< dof_id_type, std::vector< dof_id_type > > _node_to_active_semilocal_elem_map
 A map of all of the current nodes to the active elements that they are connected to. More...
 
bool _node_to_active_semilocal_elem_map_built
 
std::set< SubdomainID_mesh_subdomains
 A set of subdomain IDs currently present in the mesh. More...
 
std::unique_ptr< std::map< BoundaryID, RealVectorValue > > _boundary_to_normal_map
 The boundary to normal map - valid only when AddAllSideSetsByNormals is active. More...
 
std::vector< BndNode * > _bnd_nodes
 array of boundary nodes More...
 
std::map< boundary_id_type, std::set< dof_id_type > > _bnd_node_ids
 Map of sets of node IDs in each boundary. More...
 
std::vector< BndElement * > _bnd_elems
 array of boundary elems More...
 
std::unordered_map< boundary_id_type, std::unordered_set< dof_id_type > > _bnd_elem_ids
 Map of set of elem IDs connected to each boundary. More...
 
std::map< dof_id_type, Node * > _quadrature_nodes
 
std::map< dof_id_type, std::map< unsigned int, std::map< dof_id_type, Node * > > > _elem_to_side_to_qp_to_quadrature_nodes
 
std::vector< BndNode_extra_bnd_nodes
 
std::map< dof_id_type, std::set< SubdomainID > > _block_node_list
 list of nodes that belongs to a specified block (domain) More...
 
std::map< boundary_id_type, std::vector< dof_id_type > > _node_set_nodes
 list of nodes that belongs to a specified nodeset: indexing [nodeset_id] -> [array of node ids] More...
 
std::set< unsigned int_ghosted_boundaries
 
std::vector< Real_ghosted_boundaries_inflation
 
unsigned int _patch_size
 The number of nodes to consider in the NearestNode neighborhood. More...
 
unsigned int _ghosting_patch_size
 The number of nearest neighbors to consider for ghosting purposes when iteration patch update strategy is used. More...
 
unsigned int _max_leaf_size
 
Moose::PatchUpdateType _patch_update_strategy
 The patch update strategy. More...
 
std::vector< Node * > _node_map
 Vector of all the Nodes in the mesh for determining when to add a new point. More...
 
bool _regular_orthogonal_mesh
 Boolean indicating whether this mesh was detected to be regular and orthogonal. More...
 
std::vector< std::vector< Real > > _bounds
 The bounds in each dimension of the mesh for regular orthogonal meshes. More...
 
std::vector< std::pair< BoundaryID, BoundaryID > > _paired_boundary
 A vector holding the paired boundaries for a regular orthogonal mesh. More...
 
const bool _is_split
 Whether or not we are using a (pre-)split mesh (automatically DistributedMesh) More...
 
const bool & _enabled
 Reference to the "enable" InputParameters, used by Controls for toggling on/off MooseObjects. More...
 
MooseApp_app
 The MOOSE application this is associated with. More...
 
Factory_factory
 The Factory associated with the MooseApp. More...
 
ActionFactory_action_factory
 Builds Actions. More...
 
const std::string & _type
 The type of this class. More...
 
const std::string & _name
 The name of this class. More...
 
const InputParameters_pars
 The object's parameters. More...
 
const Parallel::Communicator_communicator
 
MooseApp_restartable_app
 Reference to the application. More...
 
const std::string _restartable_system_name
 The system name this object is in. More...
 
const THREAD_ID _restartable_tid
 The thread ID for this object. More...
 
const bool _restartable_read_only
 Flag for toggling read only status (see ReporterData) More...
 
MooseApp_pg_moose_app
 The MooseApp that owns the PerfGraph. More...
 
const std::string _prefix
 A prefix to use for all sections. More...
 
std::set< BoundaryID_mesh_boundary_ids
 A set of boundary IDs currently present in the mesh. More...
 
std::set< BoundaryID_mesh_sideset_ids
 
std::set< BoundaryID_mesh_nodeset_ids
 

Private Member Functions

void detectPairedSidesets ()
 This routine detects paired sidesets of a regular orthogonal mesh (.i.e. More...
 
void buildRefinementMap (const Elem &elem, libMesh::QBase &qrule, libMesh::QBase &qrule_face, int parent_side, int child, int child_side)
 Build the refinement map for a given element type. More...
 
void buildCoarseningMap (const Elem &elem, libMesh::QBase &qrule, libMesh::QBase &qrule_face, int input_side)
 Build the coarsening map for a given element type. More...
 
void mapPoints (const std::vector< Point > &from, const std::vector< Point > &to, std::vector< QpMap > &qp_map)
 Find the closest points that map "from" to "to" and fill up "qp_map". More...
 
void findAdaptivityQpMaps (const Elem *template_elem, libMesh::QBase &qrule, libMesh::QBase &qrule_face, std::vector< std::vector< QpMap >> &refinement_map, std::vector< std::pair< unsigned int, QpMap >> &coarsen_map, int parent_side, int child, int child_side)
 Given an elem type, get maps that tell us what qp's are closest to each other between a parent and it's children. More...
 
void buildHRefinementAndCoarseningMaps (Assembly *assembly)
 
const std::vector< QpMap > & getPRefinementMapHelper (const Elem &elem, const std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap >> &) const
 
const std::vector< QpMap > & getPCoarseningMapHelper (const Elem &elem, const std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap >> &) const
 
void updateCoordTransform ()
 Update the coordinate transformation object based on our coordinate system data. More...
 
void checkDuplicateSubdomainNames ()
 Loop through all subdomain IDs and check if there is name duplication used for the subdomains with same ID. More...
 
void computeMaxPerElemAndSide ()
 Compute the maximum numbers per element and side. More...
 
void buildElemIDInfo ()
 Build extra data for faster access to the information of extra element integers. More...
 
void buildLowerDMesh ()
 Build lower-d mesh for all sides. More...
 

Private Attributes

std::unordered_map< dof_id_type, ElemInfo_elem_to_elem_info
 Map connecting elems with their corresponding ElemInfo, we use the element ID as the key. More...
 
std::vector< const ElemInfo * > _elem_info
 Holds only those ElemInfo objects that have processor_id equal to this process's id, e.g. More...
 
std::vector< FaceInfo_all_face_info
 FaceInfo object storing information for face based loops. More...
 
std::vector< const FaceInfo * > _face_info
 Holds only those FaceInfo objects that have processor_id equal to this process's id, e.g. More...
 
std::unordered_map< std::pair< const Elem *, unsigned int >, FaceInfo * > _elem_side_to_face_info
 Map from elem-side pair to FaceInfo. More...
 
bool _finite_volume_info_dirty = true
 
bool _linear_finite_volume_dofs_cached = false
 
std::map< unsigned int, std::vector< bool > > _periodic_dim
 A map of vectors indicating which dimensions are periodic in a regular orthogonal mesh for the specified variable numbers. More...
 
RealVectorValue _half_range
 A convenience vector used to hold values in each dimension representing half of the range. More...
 
std::vector< Node * > _extreme_nodes
 A vector containing the nodes at the corners of a regular orthogonal mesh. More...
 
std::map< std::pair< int, libMesh::ElemType >, std::vector< std::vector< QpMap > > > _elem_type_to_refinement_map
 Holds mappings for volume to volume and parent side to child side Map key: More...
 
std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap > > _elem_type_to_p_refinement_map
 
std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap > > _elem_type_to_p_refinement_side_map
 
std::map< libMesh::ElemType, std::map< std::pair< int, int >, std::vector< std::vector< QpMap > > > > _elem_type_to_child_side_refinement_map
 Holds mappings for "internal" child sides to parent volume. The second key is (child, child_side). More...
 
std::map< std::pair< int, libMesh::ElemType >, std::vector< std::pair< unsigned int, QpMap > > > _elem_type_to_coarsening_map
 Holds mappings for volume to volume and parent side to child side Map key: More...
 
std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap > > _elem_type_to_p_coarsening_map
 
std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap > > _elem_type_to_p_coarsening_side_map
 
std::unordered_map< SubdomainID, SubdomainData_sub_to_data
 Holds a map from subdomain ids to associated data. More...
 
std::unordered_map< SubdomainID, std::set< BoundaryID > > _neighbor_subdomain_boundary_ids
 Holds a map from neighbor subomdain ids to the boundary ids that are attached to it. More...
 
std::set< SubdomainID_lower_d_interior_blocks
 Mesh blocks for interior lower-d elements in different types. More...
 
std::set< SubdomainID_lower_d_boundary_blocks
 Mesh blocks for boundary lower-d elements in different types. More...
 
std::unordered_map< std::pair< const Elem *, unsigned short int >, const Elem * > _higher_d_elem_side_to_lower_d_elem
 Holds a map from a high-order element side to its corresponding lower-d element. More...
 
std::unordered_map< const Elem *, unsigned short int_lower_d_elem_to_higher_d_elem_side
 
bool _has_lower_d
 Whether there are any lower-dimensional blocks that are manifolds of higher-dimensional block faces. More...
 
bool _allow_recovery
 Whether or not this Mesh is allowed to read a recovery file. More...
 
bool _construct_node_list_from_side_list
 Whether or not to allow generation of nodesets from sidesets. More...
 
bool _need_delete
 Whether we need to delete remote elements after init'ing the EquationSystems. More...
 
bool _allow_remote_element_removal
 Whether to allow removal of remote elements. More...
 
std::set< Elem * > _ghost_elems_from_ghost_boundaries
 Set of elements ghosted by ghostGhostedBoundaries. More...
 
bool _need_ghost_ghosted_boundaries
 A parallel mesh generator such as DistributedRectilinearMeshGenerator already make everything ready. More...
 
std::vector< std::unordered_map< SubdomainID, std::set< dof_id_type > > > _block_id_mapping
 Unique element integer IDs for each subdomain and each extra element integers. More...
 
std::vector< dof_id_type_max_ids
 Maximum integer ID for each extra element integer. More...
 
std::vector< dof_id_type_min_ids
 Minimum integer ID for each extra element integer. More...
 
std::vector< std::vector< bool > > _id_identical_flag
 Flags to indicate whether or not any two extra element integers are the same. More...
 
unsigned int _max_sides_per_elem
 The maximum number of sides per element. More...
 
unsigned int _max_nodes_per_elem
 The maximum number of nodes per element. More...
 
unsigned int _max_nodes_per_side
 The maximum number of nodes per side. More...
 
bool _is_displaced
 Whether this mesh is displaced. More...
 
std::map< SubdomainID, Moose::CoordinateSystemType > & _coord_sys
 Type of coordinate system per subdomain. More...
 
unsigned int _rz_coord_axis
 Storage for RZ axis selection. More...
 
std::unordered_map< SubdomainID, std::pair< Point, RealVectorValue > > _subdomain_id_to_rz_coord_axis
 Map of subdomain ID to general axisymmetric axis. More...
 
std::unique_ptr< MooseAppCoordTransform_coord_transform
 A coordinate transformation object that describes how to transform this problem's coordinate system into the canonical/reference coordinate system. More...
 
bool _coord_system_set
 Whether the coordinate system has been set. More...
 
std::vector< SubdomainName > _provided_coord_blocks
 Set for holding user-provided coordinate system type block names. More...
 
bool _doing_p_refinement
 Whether we have p-refinement (as opposed to h-refinement) More...
 
unsigned int _max_p_level
 Maximum p-refinement level of all elements. More...
 
unsigned int _max_h_level
 Maximum h-refinement level of all elements. More...
 

Detailed Description

MooseMesh wraps a libMesh::Mesh object and enhances its capabilities by caching additional data and storing more state.

Definition at line 92 of file MooseMesh.h.

Member Typedef Documentation

◆ bnd_elem_iterator_imp

typedef std::vector<BndElement *>::iterator MooseMesh::bnd_elem_iterator_imp
protected

Definition at line 1572 of file MooseMesh.h.

◆ bnd_node_iterator_imp

typedef std::vector<BndNode *>::iterator MooseMesh::bnd_node_iterator_imp
protected

Definition at line 1565 of file MooseMesh.h.

◆ const_bnd_elem_iterator_imp

typedef std::vector<BndElement *>::const_iterator MooseMesh::const_bnd_elem_iterator_imp
protected

Definition at line 1573 of file MooseMesh.h.

◆ const_bnd_node_iterator_imp

typedef std::vector<BndNode *>::const_iterator MooseMesh::const_bnd_node_iterator_imp
protected

Definition at line 1566 of file MooseMesh.h.

◆ DataFileParameterType

using DataFileInterface::DataFileParameterType = DataFileName
inherited

The parameter type this interface expects for a data file name.

Definition at line 27 of file DataFileInterface.h.

◆ PeriodicNodeInfo

using MooseMesh::PeriodicNodeInfo = std::pair<const Node *, BoundaryID>

Helper type for building periodic node maps.

Definition at line 1085 of file MooseMesh.h.

Member Enumeration Documentation

◆ anonymous enum

anonymous enum
protected

Convenience enums.

Enumerator

Definition at line 1475 of file MooseMesh.h.

1476  {
1477  X = 0,
1478  Y,
1479  Z
1480  };

◆ anonymous enum

anonymous enum
protected
Enumerator
MIN 
MAX 

Definition at line 1481 of file MooseMesh.h.

1482  {
1483  MIN = 0,
1484  MAX
1485  };

◆ ParallelType

Enumerator
DEFAULT 
REPLICATED 
DISTRIBUTED 

Definition at line 108 of file MooseMesh.h.

109  {
110  DEFAULT,
111  REPLICATED,
112  DISTRIBUTED
113  };

Constructor & Destructor Documentation

◆ MooseMesh() [1/3]

MooseMesh::MooseMesh ( const InputParameters parameters)

Definition at line 227 of file MooseMesh.C.

229  Restartable(this, "Mesh"),
230  PerfGraphInterface(this),
231  _parallel_type(getParam<MooseEnum>("parallel_type").getEnum<MooseMesh::ParallelType>()),
232  _use_distributed_mesh(false),
235  _mesh(nullptr),
236  _partitioner_name(getParam<MooseEnum>("partitioner")),
240  _skip_refine_when_use_split(getParam<bool>("skip_refine_when_use_split")),
242  _is_nemesis(getParam<bool>("nemesis")),
245  _patch_size(getParam<unsigned int>("patch_size")),
246  _ghosting_patch_size(isParamValid("ghosting_patch_size")
247  ? getParam<unsigned int>("ghosting_patch_size")
248  : 5 * _patch_size),
249  _max_leaf_size(getParam<unsigned int>("max_leaf_size")),
251  getParam<MooseEnum>("patch_update_strategy").getEnum<Moose::PatchUpdateType>()),
253  _is_split(getParam<bool>("_is_split")),
254  _has_lower_d(false),
255  _allow_recovery(true),
256  _construct_node_list_from_side_list(getParam<bool>("construct_node_list_from_side_list")),
257  _need_delete(false),
260  _is_displaced(false),
261  _coord_sys(
262  declareRestartableData<std::map<SubdomainID, Moose::CoordinateSystemType>>("coord_sys")),
263  _rz_coord_axis(getParam<MooseEnum>("rz_coord_axis")),
264  _coord_system_set(false),
265  _doing_p_refinement(false)
266 {
267  if (isParamValid("ghosting_patch_size") && (_patch_update_strategy != Moose::Iteration))
268  mooseError("Ghosting patch size parameter has to be set in the mesh block "
269  "only when 'iteration' patch update strategy is used.");
270 
271  if (isParamValid("coord_block"))
272  {
273  if (isParamValid("block"))
274  paramWarning("block",
275  "You set both 'Mesh/block' and 'Mesh/coord_block'. The value of "
276  "'Mesh/coord_block' will be used.");
277 
278  _provided_coord_blocks = getParam<std::vector<SubdomainName>>("coord_block");
279  }
280  else if (isParamValid("block"))
281  _provided_coord_blocks = getParam<std::vector<SubdomainName>>("block");
282 
283  if (getParam<bool>("build_all_side_lowerd_mesh"))
284  // Do not initially allow removal of remote elements
286 
288 
289 #ifdef MOOSE_KOKKOS_ENABLED
290  if (_app.isKokkosAvailable())
291  _kokkos_mesh = std::make_unique<Moose::Kokkos::Mesh>(*this);
292 #endif
293 }
ParallelType _parallel_type
Can be set to DISTRIBUTED, REPLICATED, or DEFAULT.
Definition: MooseMesh.h:1449
bool _node_to_elem_map_built
Definition: MooseMesh.h:1537
bool allowRemoteElementRemoval() const
Whether we are allow remote element removal.
Definition: MooseMesh.h:1105
bool _is_nemesis
True if a Nemesis Mesh was read in.
Definition: MooseMesh.h:1500
std::vector< SubdomainName > _provided_coord_blocks
Set for holding user-provided coordinate system type block names.
Definition: MooseMesh.h:1917
bool _need_ghost_ghosted_boundaries
A parallel mesh generator such as DistributedRectilinearMeshGenerator already make everything ready...
Definition: MooseMesh.h:1868
unsigned int _uniform_refine_level
The level of uniform refinement requested (set to zero if AMR is disabled)
Definition: MooseMesh.h:1488
unsigned int _max_leaf_size
Definition: MooseMesh.h:1599
const T & getParam(const std::string &name) const
Retrieve a parameter for the object.
Definition: MooseBase.h:388
std::map< SubdomainID, Moose::CoordinateSystemType > & _coord_sys
Type of coordinate system per subdomain.
Definition: MooseMesh.h:1901
bool _custom_partitioner_requested
Definition: MooseMesh.h:1472
const InputParameters & parameters() const
Get the parameters of the object.
Definition: MooseBase.h:131
bool _doing_p_refinement
Whether we have p-refinement (as opposed to h-refinement)
Definition: MooseMesh.h:1920
void determineUseDistributedMesh()
Determine whether to use a distributed mesh.
Definition: MooseMesh.C:2866
MooseObject(const InputParameters &parameters)
Definition: MooseObject.C:45
bool _has_lower_d
Whether there are any lower-dimensional blocks that are manifolds of higher-dimensional block faces...
Definition: MooseMesh.h:1847
T & declareRestartableData(const std::string &data_name, Args &&... args)
Declare a piece of data as "restartable" and initialize it.
Definition: Restartable.h:276
MooseEnum _partitioner_name
The partitioner used on this mesh.
Definition: MooseMesh.h:1467
bool _node_to_active_semilocal_elem_map_built
Definition: MooseMesh.h:1541
bool _skip_refine_when_use_split
Whether or not to skip uniform refinements when using a pre-split mesh.
Definition: MooseMesh.h:1491
bool _allow_recovery
Whether or not this Mesh is allowed to read a recovery file.
Definition: MooseMesh.h:1850
bool _use_distributed_mesh
False by default.
Definition: MooseMesh.h:1454
std::unique_ptr< Moose::Kokkos::Mesh > _kokkos_mesh
Pointer to Kokkos mesh object.
Definition: MooseMesh.h:1463
bool _allow_remote_element_removal
Whether to allow removal of remote elements.
Definition: MooseMesh.h:1859
bool _construct_node_list_from_side_list
Whether or not to allow generation of nodesets from sidesets.
Definition: MooseMesh.h:1853
bool isKokkosAvailable() const
Get whether Kokkos is available.
Definition: MooseApp.h:1101
const bool _is_split
Whether or not we are using a (pre-)split mesh (automatically DistributedMesh)
Definition: MooseMesh.h:1617
MooseApp & _app
The MOOSE application this is associated with.
Definition: MooseBase.h:357
bool _coord_system_set
Whether the coordinate system has been set.
Definition: MooseMesh.h:1914
bool _parallel_type_overridden
Definition: MooseMesh.h:1456
Restartable(const MooseObject *moose_object, const std::string &system_name)
Class constructor.
Definition: Restartable.C:18
Moose::PatchUpdateType _patch_update_strategy
The patch update strategy.
Definition: MooseMesh.h:1602
bool _partitioner_overridden
Definition: MooseMesh.h:1468
bool _is_displaced
Whether this mesh is displaced.
Definition: MooseMesh.h:1892
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1459
bool _skip_deletion_repartition_after_refine
Whether or not skip remote deletion and repartition after uniform refinements.
Definition: MooseMesh.h:1494
bool _need_delete
Whether we need to delete remote elements after init&#39;ing the EquationSystems.
Definition: MooseMesh.h:1856
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271
unsigned int _patch_size
The number of nodes to consider in the NearestNode neighborhood.
Definition: MooseMesh.h:1593
bool isParamValid(const std::string &name) const
Test if the supplied parameter is valid.
Definition: MooseBase.h:199
PerfGraphInterface(const MooseObject *moose_object)
For objects that are MooseObjects with a default prefix of type()
void paramWarning(const std::string &param, Args... args) const
Emits a warning prefixed with the file and line number of the given param (from the input file) along...
Definition: MooseBase.h:446
unsigned int _rz_coord_axis
Storage for RZ axis selection.
Definition: MooseMesh.h:1904
bool _distribution_overridden
Definition: MooseMesh.h:1455
unsigned int _ghosting_patch_size
The number of nearest neighbors to consider for ghosting purposes when iteration patch update strateg...
Definition: MooseMesh.h:1596
bool _regular_orthogonal_mesh
Boolean indicating whether this mesh was detected to be regular and orthogonal.
Definition: MooseMesh.h:1608

◆ MooseMesh() [2/3]

MooseMesh::MooseMesh ( const MooseMesh other_mesh)

Definition at line 295 of file MooseMesh.C.

296  : MooseObject(other_mesh._pars),
297  Restartable(this, "Mesh"),
298  PerfGraphInterface(this, "CopiedMesh"),
300  _parallel_type(other_mesh._parallel_type),
304  _mesh(other_mesh.getMesh().clone()),
311  _is_nemesis(false),
314  _patch_size(other_mesh._patch_size),
316  _max_leaf_size(other_mesh._max_leaf_size),
319  _is_split(other_mesh._is_split),
322  _has_lower_d(other_mesh._has_lower_d),
323  _allow_recovery(other_mesh._allow_recovery),
325  _need_delete(other_mesh._need_delete),
328  _coord_sys(other_mesh._coord_sys),
329  _rz_coord_axis(other_mesh._rz_coord_axis),
334 {
335  // Note: this calls BoundaryInfo::operator= without changing the
336  // ownership semantics of either Mesh's BoundaryInfo object.
337  getMesh().get_boundary_info() = other_mesh.getMesh().get_boundary_info();
338 
339  const std::set<SubdomainID> & subdomains = other_mesh.meshSubdomains();
340  for (const auto & sbd_id : subdomains)
341  setSubdomainName(sbd_id, other_mesh.getMesh().subdomain_name(sbd_id));
342 
343  // Get references to BoundaryInfo objects to make the code below cleaner...
344  const BoundaryInfo & other_boundary_info = other_mesh.getMesh().get_boundary_info();
345  BoundaryInfo & boundary_info = getMesh().get_boundary_info();
346 
347  // Use the other BoundaryInfo object to build the list of side boundary ids
348  std::vector<BoundaryID> side_boundaries;
349  other_boundary_info.build_side_boundary_ids(side_boundaries);
350 
351  // Assign those boundary ids in our BoundaryInfo object
352  for (const auto & side_bnd_id : side_boundaries)
353  boundary_info.sideset_name(side_bnd_id) = other_boundary_info.get_sideset_name(side_bnd_id);
354 
355  // Do the same thing for node boundary ids
356  std::vector<BoundaryID> node_boundaries;
357  other_boundary_info.build_node_boundary_ids(node_boundaries);
358 
359  for (const auto & node_bnd_id : node_boundaries)
360  boundary_info.nodeset_name(node_bnd_id) = other_boundary_info.get_nodeset_name(node_bnd_id);
361 
362  _bounds.resize(other_mesh._bounds.size());
363  for (std::size_t i = 0; i < _bounds.size(); ++i)
364  {
365  _bounds[i].resize(other_mesh._bounds[i].size());
366  for (std::size_t j = 0; j < _bounds[i].size(); ++j)
367  _bounds[i][j] = other_mesh._bounds[i][j];
368  }
369 
371 
372 #ifdef MOOSE_KOKKOS_ENABLED
373  if (_app.isKokkosAvailable())
374  _kokkos_mesh = std::make_unique<Moose::Kokkos::Mesh>(*this);
375 #endif
376 }
ParallelType _parallel_type
Can be set to DISTRIBUTED, REPLICATED, or DEFAULT.
Definition: MooseMesh.h:1449
std::vector< std::vector< Real > > _bounds
The bounds in each dimension of the mesh for regular orthogonal meshes.
Definition: MooseMesh.h:1611
bool _node_to_elem_map_built
Definition: MooseMesh.h:1537
bool _is_nemesis
True if a Nemesis Mesh was read in.
Definition: MooseMesh.h:1500
std::vector< SubdomainName > _provided_coord_blocks
Set for holding user-provided coordinate system type block names.
Definition: MooseMesh.h:1917
bool _need_ghost_ghosted_boundaries
A parallel mesh generator such as DistributedRectilinearMeshGenerator already make everything ready...
Definition: MooseMesh.h:1868
unsigned int _uniform_refine_level
The level of uniform refinement requested (set to zero if AMR is disabled)
Definition: MooseMesh.h:1488
const InputParameters & _pars
The object&#39;s parameters.
Definition: MooseBase.h:366
std::string & nodeset_name(boundary_id_type id)
unsigned int _max_leaf_size
Definition: MooseMesh.h:1599
std::map< SubdomainID, Moose::CoordinateSystemType > & _coord_sys
Type of coordinate system per subdomain.
Definition: MooseMesh.h:1901
bool _custom_partitioner_requested
Definition: MooseMesh.h:1472
bool _doing_p_refinement
Whether we have p-refinement (as opposed to h-refinement)
Definition: MooseMesh.h:1920
MooseObject(const InputParameters &parameters)
Definition: MooseObject.C:45
bool _has_lower_d
Whether there are any lower-dimensional blocks that are manifolds of higher-dimensional block faces...
Definition: MooseMesh.h:1847
MooseEnum _partitioner_name
The partitioner used on this mesh.
Definition: MooseMesh.h:1467
bool _node_to_active_semilocal_elem_map_built
Definition: MooseMesh.h:1541
void build_side_boundary_ids(std::vector< boundary_id_type > &b_ids) const
bool _skip_refine_when_use_split
Whether or not to skip uniform refinements when using a pre-split mesh.
Definition: MooseMesh.h:1491
std::set< SubdomainID > _lower_d_boundary_blocks
Mesh blocks for boundary lower-d elements in different types.
Definition: MooseMesh.h:1839
const BoundaryInfo & get_boundary_info() const
virtual std::unique_ptr< MeshBase > clone() const=0
bool _allow_recovery
Whether or not this Mesh is allowed to read a recovery file.
Definition: MooseMesh.h:1850
std::set< SubdomainID > _lower_d_interior_blocks
Mesh blocks for interior lower-d elements in different types.
Definition: MooseMesh.h:1837
void updateCoordTransform()
Update the coordinate transformation object based on our coordinate system data.
Definition: MooseMesh.C:4325
bool _use_distributed_mesh
False by default.
Definition: MooseMesh.h:1454
bool _built_from_other_mesh
Whether or not this mesh was built from another mesh.
Definition: MooseMesh.h:1445
std::unique_ptr< Moose::Kokkos::Mesh > _kokkos_mesh
Pointer to Kokkos mesh object.
Definition: MooseMesh.h:1463
bool _allow_remote_element_removal
Whether to allow removal of remote elements.
Definition: MooseMesh.h:1859
void setSubdomainName(SubdomainID subdomain_id, const SubdomainName &name)
This method sets the name for subdomain_id to name.
Definition: MooseMesh.C:1787
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
bool _construct_node_list_from_side_list
Whether or not to allow generation of nodesets from sidesets.
Definition: MooseMesh.h:1853
bool isKokkosAvailable() const
Get whether Kokkos is available.
Definition: MooseApp.h:1101
std::string & subdomain_name(subdomain_id_type id)
const bool _is_split
Whether or not we are using a (pre-)split mesh (automatically DistributedMesh)
Definition: MooseMesh.h:1617
MooseApp & _app
The MOOSE application this is associated with.
Definition: MooseBase.h:357
unsigned int uniformRefineLevel() const
Returns the level of uniform refinement requested (zero if AMR is disabled).
Definition: MooseMesh.C:3256
bool _coord_system_set
Whether the coordinate system has been set.
Definition: MooseMesh.h:1914
bool _parallel_type_overridden
Definition: MooseMesh.h:1456
Restartable(const MooseObject *moose_object, const std::string &system_name)
Class constructor.
Definition: Restartable.C:18
std::string & sideset_name(boundary_id_type id)
Moose::PatchUpdateType _patch_update_strategy
The patch update strategy.
Definition: MooseMesh.h:1602
bool _partitioner_overridden
Definition: MooseMesh.h:1468
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1459
bool _skip_deletion_repartition_after_refine
Whether or not skip remote deletion and repartition after uniform refinements.
Definition: MooseMesh.h:1494
bool _need_delete
Whether we need to delete remote elements after init&#39;ing the EquationSystems.
Definition: MooseMesh.h:1856
unsigned int _patch_size
The number of nodes to consider in the NearestNode neighborhood.
Definition: MooseMesh.h:1593
PerfGraphInterface(const MooseObject *moose_object)
For objects that are MooseObjects with a default prefix of type()
std::unordered_map< SubdomainID, std::pair< Point, RealVectorValue > > _subdomain_id_to_rz_coord_axis
Map of subdomain ID to general axisymmetric axis.
Definition: MooseMesh.h:1907
unsigned int _rz_coord_axis
Storage for RZ axis selection.
Definition: MooseMesh.h:1904
bool _distribution_overridden
Definition: MooseMesh.h:1455
unsigned int _ghosting_patch_size
The number of nearest neighbors to consider for ghosting purposes when iteration patch update strateg...
Definition: MooseMesh.h:1596
bool _regular_orthogonal_mesh
Boolean indicating whether this mesh was detected to be regular and orthogonal.
Definition: MooseMesh.h:1608
const std::set< SubdomainID > & meshSubdomains() const
Returns a read-only reference to the set of subdomains currently present in the Mesh.
Definition: MooseMesh.C:3211

◆ MooseMesh() [3/3]

MooseMesh::MooseMesh ( )
delete

◆ ~MooseMesh()

MooseMesh::~MooseMesh ( )
virtual

Definition at line 378 of file MooseMesh.C.

379 {
380  freeBndNodes();
381  freeBndElems();
383 }
void freeBndElems()
Definition: MooseMesh.C:405
void clearQuadratureNodes()
Clear out any existing quadrature nodes.
Definition: MooseMesh.C:1718
void freeBndNodes()
Definition: MooseMesh.C:386

Member Function Documentation

◆ activeLocalElementsBegin() [1/2]

MeshBase::element_iterator MooseMesh::activeLocalElementsBegin ( )

Calls active_local_nodes_begin/end() on the underlying libMesh mesh object.

Definition at line 3091 of file MooseMesh.C.

Referenced by FEProblemBase::checkDisplacementOrders(), and hasSecondOrderElements().

3092 {
3093  return getMesh().active_local_elements_begin();
3094 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488

◆ activeLocalElementsBegin() [2/2]

MeshBase::const_element_iterator MooseMesh::activeLocalElementsBegin ( ) const

Definition at line 3103 of file MooseMesh.C.

3104 {
3105  return getMesh().active_local_elements_begin();
3106 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488

◆ activeLocalElementsEnd() [1/2]

const MeshBase::element_iterator MooseMesh::activeLocalElementsEnd ( )

Definition at line 3097 of file MooseMesh.C.

Referenced by FEProblemBase::checkDisplacementOrders(), and hasSecondOrderElements().

3098 {
3099  return getMesh().active_local_elements_end();
3100 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488

◆ activeLocalElementsEnd() [2/2]

const MeshBase::const_element_iterator MooseMesh::activeLocalElementsEnd ( ) const

Definition at line 3109 of file MooseMesh.C.

3110 {
3111  return getMesh().active_local_elements_end();
3112 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488

◆ addGhostedBoundary()

void MooseMesh::addGhostedBoundary ( BoundaryID  boundary_id)

This will add the boundary ids to be ghosted to this processor.

Definition at line 3269 of file MooseMesh.C.

Referenced by FEProblemBase::addGhostedBoundary().

3270 {
3271  _ghosted_boundaries.insert(boundary_id);
3272 }
std::set< unsigned int > _ghosted_boundaries
Definition: MooseMesh.h:1589

◆ addPeriodicVariable()

void MooseMesh::addPeriodicVariable ( unsigned int  var_num,
BoundaryID  primary,
BoundaryID  secondary 
)

For "regular orthogonal" meshes, determine if variable var_num is periodic with respect to the primary and secondary BoundaryIDs, record this fact in the _periodic_dim data structure.

Definition at line 2255 of file MooseMesh.C.

Referenced by AddPeriodicBCAction::setPeriodicVars().

2256 {
2258  return;
2259 
2260  _periodic_dim[var_num].resize(dimension());
2261 
2262  _half_range = Point(dimensionWidth(0) / 2.0, dimensionWidth(1) / 2.0, dimensionWidth(2) / 2.0);
2263 
2264  bool component_found = false;
2265  for (unsigned int component = 0; component < dimension(); ++component)
2266  {
2267  const std::pair<BoundaryID, BoundaryID> * boundary_ids = getPairedBoundaryMapping(component);
2268 
2269  if (boundary_ids != nullptr &&
2270  ((boundary_ids->first == primary && boundary_ids->second == secondary) ||
2271  (boundary_ids->first == secondary && boundary_ids->second == primary)))
2272  {
2273  _periodic_dim[var_num][component] = true;
2274  component_found = true;
2275  }
2276  }
2277  if (!component_found)
2278  mooseWarning("Could not find a match between boundary '",
2279  getBoundaryName(primary),
2280  "' and '",
2281  getBoundaryName(secondary),
2282  "' to set periodic boundary conditions for variable (index:",
2283  var_num,
2284  ") in either the X, Y or Z direction. The periodic dimension of the mesh for this "
2285  "variable will not be stored.");
2286 }
RealVectorValue _half_range
A convenience vector used to hold values in each dimension representing half of the range...
Definition: MooseMesh.h:1662
const std::string & getBoundaryName(BoundaryID boundary_id)
Return the name of the boundary given the id.
Definition: MooseMesh.C:1830
virtual unsigned int dimension() const
Returns MeshBase::mesh_dimension(), (not MeshBase::spatial_dimension()!) of the underlying libMesh me...
Definition: MooseMesh.C:2968
const std::pair< BoundaryID, BoundaryID > * getPairedBoundaryMapping(unsigned int component)
This function attempts to return the paired boundary ids for the given component. ...
Definition: MooseMesh.C:2331
Real dimensionWidth(unsigned int component) const
Returns the width of the requested dimension.
Definition: MooseMesh.C:2231
void mooseWarning(Args &&... args) const
Emits a warning prefixed with object name and type.
Definition: MooseBase.h:299
std::map< unsigned int, std::vector< bool > > _periodic_dim
A map of vectors indicating which dimensions are periodic in a regular orthogonal mesh for the specif...
Definition: MooseMesh.h:1657
bool _regular_orthogonal_mesh
Boolean indicating whether this mesh was detected to be regular and orthogonal.
Definition: MooseMesh.h:1608

◆ addQuadratureNode()

Node * MooseMesh::addQuadratureNode ( const Elem elem,
const unsigned short int  side,
const unsigned int  qp,
BoundaryID  bid,
const Point point 
)

Adds a fictitious "QuadratureNode".

This doesn't actually add it to the libMesh mesh... we just keep track of these here in MooseMesh.

QuadratureNodes are fictitious "Nodes" that are located at quadrature points. This is useful for using the geometric search system to do searches based on quadrature point locations....

Parameters
elemThe element
sideThe side number on which we want to add a quadrature node
qpThe number of the quadrature point
bidThe boundary ID for the point to be added with
pointThe physical location of the point

Definition at line 1648 of file MooseMesh.C.

Referenced by GeometricSearchData::generateQuadratureNodes().

1653 {
1654  Node * qnode;
1655 
1656  if (_elem_to_side_to_qp_to_quadrature_nodes[elem->id()][side].find(qp) ==
1658  {
1659  // Create a new node id starting from the max node id and counting down. This will be the least
1660  // likely to collide with an existing node id.
1661  // Note that we are using numeric_limits<unsigned>::max even
1662  // though max_id is stored as a dof_id_type. I tried this with
1663  // numeric_limits<dof_id_type>::max and it broke several tests in
1664  // MOOSE. So, this is some kind of a magic number that we will
1665  // just continue to use...
1667  dof_id_type new_id = max_id - _quadrature_nodes.size();
1668 
1669  if (new_id <= getMesh().max_node_id())
1670  mooseError("Quadrature node id collides with existing node id!");
1671 
1672  qnode = new Node(point, new_id);
1673 
1674  // Keep track of this new node in two different ways for easy lookup
1675  _quadrature_nodes[new_id] = qnode;
1676  _elem_to_side_to_qp_to_quadrature_nodes[elem->id()][side][qp] = qnode;
1677 
1678  if (elem->active())
1679  {
1680  _node_to_elem_map[new_id].push_back(elem->id());
1681  _node_to_active_semilocal_elem_map[new_id].push_back(elem->id());
1682  }
1683  }
1684  else
1685  qnode = _elem_to_side_to_qp_to_quadrature_nodes[elem->id()][side][qp];
1686 
1687  BndNode * bnode = new BndNode(qnode, bid);
1688  _bnd_nodes.push_back(bnode);
1689  _bnd_node_ids[bid].insert(qnode->id());
1690 
1691  _extra_bnd_nodes.push_back(*bnode);
1692 
1693  // Do this so the range will be regenerated next time it is accessed
1694  _bnd_node_range.reset();
1695 
1696  return qnode;
1697 }
std::map< dof_id_type, Node * > _quadrature_nodes
Definition: MooseMesh.h:1578
std::map< dof_id_type, std::vector< dof_id_type > > _node_to_elem_map
A map of all of the current nodes to the elements that they are connected to.
Definition: MooseMesh.h:1536
std::map< boundary_id_type, std::set< dof_id_type > > _bnd_node_ids
Map of sets of node IDs in each boundary.
Definition: MooseMesh.h:1568
auto max(const L &left, const R &right)
dof_id_type id() const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
std::vector< BndNode * > _bnd_nodes
array of boundary nodes
Definition: MooseMesh.h:1564
std::vector< BndNode > _extra_bnd_nodes
Definition: MooseMesh.h:1581
std::map< dof_id_type, std::map< unsigned int, std::map< dof_id_type, Node * > > > _elem_to_side_to_qp_to_quadrature_nodes
Definition: MooseMesh.h:1580
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139
bool active() const
std::map< dof_id_type, std::vector< dof_id_type > > _node_to_active_semilocal_elem_map
A map of all of the current nodes to the active elements that they are connected to.
Definition: MooseMesh.h:1540
std::unique_ptr< libMesh::StoredRange< MooseMesh::const_bnd_node_iterator, const BndNode * > > _bnd_node_range
Definition: MooseMesh.h:1531
uint8_t dof_id_type

◆ addUniqueNode()

const Node * MooseMesh::addUniqueNode ( const Point p,
Real  tol = 1e-6 
)

Add a new node to the mesh.

If there is already a node located at the point passed then the node will not be added. In either case a reference to the node at that location will be returned

Looping through the mesh nodes each time we add a point is very slow. To speed things up we keep a local data structure

Definition at line 1614 of file MooseMesh.C.

1615 {
1620  if (getMesh().n_nodes() != _node_map.size())
1621  {
1622  _node_map.clear();
1623  _node_map.reserve(getMesh().n_nodes());
1624  for (const auto & node : getMesh().node_ptr_range())
1625  _node_map.push_back(node);
1626  }
1627 
1628  Node * node = nullptr;
1629  for (unsigned int i = 0; i < _node_map.size(); ++i)
1630  {
1631  if (p.relative_fuzzy_equals(*_node_map[i], tol))
1632  {
1633  node = _node_map[i];
1634  break;
1635  }
1636  }
1637  if (node == nullptr)
1638  {
1639  node = getMesh().add_node(new Node(p));
1640  _node_map.push_back(node);
1641  }
1642 
1643  mooseAssert(node != nullptr, "Node is NULL");
1644  return node;
1645 }
const dof_id_type n_nodes
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
std::vector< Node * > _node_map
Vector of all the Nodes in the mesh for determining when to add a new point.
Definition: MooseMesh.h:1605
virtual Node * add_node(Node *n)=0
virtual const Node & node(const dof_id_type i) const
Various accessors (pointers/references) for Node "i".
Definition: MooseMesh.C:835
bool relative_fuzzy_equals(const TypeVector< Real > &rhs, Real tol=TOLERANCE) const

◆ allFaceInfo()

const std::vector< FaceInfo > & MooseMesh::allFaceInfo ( ) const
inline

Accessor for all FaceInfo objects.

Definition at line 2222 of file MooseMesh.h.

2223 {
2224  return _all_face_info;
2225 }
std::vector< FaceInfo > _all_face_info
FaceInfo object storing information for face based loops.
Definition: MooseMesh.h:1635

◆ allowRecovery()

void MooseMesh::allowRecovery ( bool  allow)
inline

Set whether or not this mesh is allowed to read a recovery file.

Definition at line 1042 of file MooseMesh.h.

1042 { _allow_recovery = allow; }
bool _allow_recovery
Whether or not this Mesh is allowed to read a recovery file.
Definition: MooseMesh.h:1850

◆ allowRemoteElementRemoval() [1/2]

void MooseMesh::allowRemoteElementRemoval ( bool  allow_removal)

Set whether to allow remote element removal.

Definition at line 3955 of file MooseMesh.C.

3956 {
3957  _allow_remote_element_removal = allow_remote_element_removal;
3958  if (_mesh)
3959  _mesh->allow_remote_element_removal(allow_remote_element_removal);
3960 
3961  if (!allow_remote_element_removal)
3962  // If we're not allowing remote element removal now, then we will need deletion later after
3963  // late geoemetric ghosting functors have been added (late geometric ghosting functor addition
3964  // happens when algebraic ghosting functors are added)
3965  _need_delete = true;
3966 }
bool _allow_remote_element_removal
Whether to allow removal of remote elements.
Definition: MooseMesh.h:1859
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1459
bool _need_delete
Whether we need to delete remote elements after init&#39;ing the EquationSystems.
Definition: MooseMesh.h:1856

◆ allowRemoteElementRemoval() [2/2]

bool MooseMesh::allowRemoteElementRemoval ( ) const
inline

Whether we are allow remote element removal.

Definition at line 1105 of file MooseMesh.h.

Referenced by MooseMesh().

bool _allow_remote_element_removal
Whether to allow removal of remote elements.
Definition: MooseMesh.h:1859

◆ areElemIDsIdentical()

bool MooseMesh::areElemIDsIdentical ( const std::string &  id_name1,
const std::string &  id_name2 
) const
inline

Whether or not two extra element integers are identical.

Definition at line 2208 of file MooseMesh.h.

2209 {
2210  auto id1 = getElementIDIndex(id_name1);
2211  auto id2 = getElementIDIndex(id_name2);
2212  return _id_identical_flag[id1][id2];
2213 }
std::vector< std::vector< bool > > _id_identical_flag
Flags to indicate whether or not any two extra element integers are the same.
Definition: MooseMesh.h:1877
unsigned int getElementIDIndex(const std::string &id_name) const
Return the accessing integer for an extra element integer with its name.
Definition: MooseMesh.h:2200

◆ bndElemsBegin()

MooseMesh::bnd_elem_iterator MooseMesh::bndElemsBegin ( )
virtual

Return iterators to the beginning/end of the boundary elements list.

Definition at line 1599 of file MooseMesh.C.

Referenced by getBoundaryElementRange(), and MeshInfo::possiblyAddSidesetInfo().

1600 {
1602  return bnd_elem_iterator(_bnd_elems.begin(), _bnd_elems.end(), p);
1603 }
std::vector< BndElement * > _bnd_elems
array of boundary elems
Definition: MooseMesh.h:1571

◆ bndElemsEnd()

MooseMesh::bnd_elem_iterator MooseMesh::bndElemsEnd ( )
virtual

Definition at line 1607 of file MooseMesh.C.

Referenced by getBoundaryElementRange(), and MeshInfo::possiblyAddSidesetInfo().

1608 {
1610  return bnd_elem_iterator(_bnd_elems.end(), _bnd_elems.end(), p);
1611 }
std::vector< BndElement * > _bnd_elems
array of boundary elems
Definition: MooseMesh.h:1571

◆ bndNodesBegin()

MooseMesh::bnd_node_iterator MooseMesh::bndNodesBegin ( )
virtual

Return iterators to the beginning/end of the boundary nodes list.

Definition at line 1583 of file MooseMesh.C.

Referenced by getBoundaryNodeRange().

1584 {
1586  return bnd_node_iterator(_bnd_nodes.begin(), _bnd_nodes.end(), p);
1587 }
std::vector< BndNode * > _bnd_nodes
array of boundary nodes
Definition: MooseMesh.h:1564

◆ bndNodesEnd()

MooseMesh::bnd_node_iterator MooseMesh::bndNodesEnd ( )
virtual

Definition at line 1591 of file MooseMesh.C.

Referenced by getBoundaryNodeRange().

1592 {
1594  return bnd_node_iterator(_bnd_nodes.end(), _bnd_nodes.end(), p);
1595 }
std::vector< BndNode * > _bnd_nodes
array of boundary nodes
Definition: MooseMesh.h:1564

◆ boundaryLowerDBlocks()

const std::set<SubdomainID>& MooseMesh::boundaryLowerDBlocks ( ) const
inline
Returns
The set of lower-dimensional blocks for boundary sides

Definition at line 1433 of file MooseMesh.h.

Referenced by FEProblemBase::adaptMesh(), ArrayHFEMDirichletBC::ArrayHFEMDirichletBC(), ArrayLowerDIntegratedBC::ArrayLowerDIntegratedBC(), NonlinearSystemBase::checkKernelCoverage(), HFEMDirichletBC::HFEMDirichletBC(), FEProblemBase::initialAdaptMesh(), and LowerDIntegratedBC::LowerDIntegratedBC().

1433 { return _lower_d_boundary_blocks; }
std::set< SubdomainID > _lower_d_boundary_blocks
Mesh blocks for boundary lower-d elements in different types.
Definition: MooseMesh.h:1839

◆ buildActiveSideList()

std::vector< std::tuple< dof_id_type, unsigned short int, boundary_id_type > > MooseMesh::buildActiveSideList ( ) const

Calls BoundaryInfo::build_active_side_list.

Returns
A container of active (element, side, id) tuples.

Definition at line 3055 of file MooseMesh.C.

Referenced by buildFiniteVolumeInfo().

3056 {
3058 }
void build_active_side_list(std::vector< dof_id_type > &element_id_list, std::vector< unsigned short int > &side_list, std::vector< boundary_id_type > &bc_id_list) const
const BoundaryInfo & get_boundary_info() const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488

◆ buildBndElemList()

void MooseMesh::buildBndElemList ( )

Definition at line 1193 of file MooseMesh.C.

Referenced by update().

1194 {
1195  TIME_SECTION("buildBndElemList", 5, "Building Boundary Elements List");
1196 
1197  freeBndElems();
1198 
1199  auto bc_tuples = getMesh().get_boundary_info().build_active_side_list();
1200 
1201  int n = bc_tuples.size();
1202  _bnd_elems.clear();
1203  _bnd_elems.reserve(n);
1204  for (const auto & t : bc_tuples)
1205  {
1206  auto elem_id = std::get<0>(t);
1207  auto side_id = std::get<1>(t);
1208  auto bc_id = std::get<2>(t);
1209 
1210  _bnd_elems.push_back(new BndElement(getMesh().elem_ptr(elem_id), side_id, bc_id));
1211  _bnd_elem_ids[bc_id].insert(elem_id);
1212  }
1213 }
void freeBndElems()
Definition: MooseMesh.C:405
std::unordered_map< boundary_id_type, std::unordered_set< dof_id_type > > _bnd_elem_ids
Map of set of elem IDs connected to each boundary.
Definition: MooseMesh.h:1576
const boundary_id_type side_id
void build_active_side_list(std::vector< dof_id_type > &element_id_list, std::vector< unsigned short int > &side_list, std::vector< boundary_id_type > &bc_id_list) const
const BoundaryInfo & get_boundary_info() const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
std::vector< BndElement * > _bnd_elems
array of boundary elems
Definition: MooseMesh.h:1571

◆ buildCoarseningMap()

void MooseMesh::buildCoarseningMap ( const Elem elem,
libMesh::QBase qrule,
libMesh::QBase qrule_face,
int  input_side 
)
private

Build the coarsening map for a given element type.

This will tell you what quadrature points to copy from and to for stateful material properties on newly created elements from Adaptivity.

Parameters
elemThe element that represents the element type you need the coarsening map for.
qruleThe quadrature rule in use.
qrule_faceThe current face quadrature rule
input_sideThe side to map

TODO: When running with parallel mesh + stateful adaptivty we will need to make sure that each processor has a complete map. This may require parallel communication. This is likely to happen when running on a mixed element mesh.

Definition at line 2589 of file MooseMesh.C.

Referenced by buildHRefinementAndCoarseningMaps().

2590 {
2591  TIME_SECTION("buildCoarseningMap", 5, "Building Coarsening Map");
2592 
2593  std::pair<int, ElemType> the_pair(input_side, elem.type());
2594 
2595  if (_elem_type_to_coarsening_map.find(the_pair) != _elem_type_to_coarsening_map.end())
2596  mooseError("Already built a qp coarsening map!");
2597 
2598  std::vector<std::vector<QpMap>> refinement_map;
2599  std::vector<std::pair<unsigned int, QpMap>> & coarsen_map =
2600  _elem_type_to_coarsening_map[the_pair];
2601 
2602  // The -1 here is for a specific child. We don't do that for coarsening maps
2603  // Also note that we're always mapping the same side to the same side (which is guaranteed by
2604  // libMesh).
2606  &elem, qrule, qrule_face, refinement_map, coarsen_map, input_side, -1, input_side);
2607 
2614 }
std::map< std::pair< int, libMesh::ElemType >, std::vector< std::pair< unsigned int, QpMap > > > _elem_type_to_coarsening_map
Holds mappings for volume to volume and parent side to child side Map key:
Definition: MooseMesh.h:1810
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271
void findAdaptivityQpMaps(const Elem *template_elem, libMesh::QBase &qrule, libMesh::QBase &qrule_face, std::vector< std::vector< QpMap >> &refinement_map, std::vector< std::pair< unsigned int, QpMap >> &coarsen_map, int parent_side, int child, int child_side)
Given an elem type, get maps that tell us what qp&#39;s are closest to each other between a parent and it...
Definition: MooseMesh.C:2659
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139
virtual ElemType type() const=0

◆ buildElemIDInfo()

void MooseMesh::buildElemIDInfo ( )
private

Build extra data for faster access to the information of extra element integers.

Definition at line 1097 of file MooseMesh.C.

Referenced by update().

1098 {
1099  unsigned int n = getMesh().n_elem_integers() + 1;
1100 
1101  _block_id_mapping.clear();
1102  _max_ids.clear();
1103  _min_ids.clear();
1104  _id_identical_flag.clear();
1105 
1106  _block_id_mapping.resize(n);
1109  _id_identical_flag.resize(n, std::vector<bool>(n, true));
1110  for (const auto & elem : getMesh().active_local_element_ptr_range())
1111  for (unsigned int i = 0; i < n; ++i)
1112  {
1113  auto id = (i == n - 1 ? elem->subdomain_id() : elem->get_extra_integer(i));
1114  _block_id_mapping[i][elem->subdomain_id()].insert(id);
1115  if (id > _max_ids[i])
1116  _max_ids[i] = id;
1117  if (id < _min_ids[i])
1118  _min_ids[i] = id;
1119  for (unsigned int j = 0; j < n; ++j)
1120  {
1121  auto idj = (j == n - 1 ? elem->subdomain_id() : elem->get_extra_integer(j));
1122  if (i != j && _id_identical_flag[i][j] && id != idj)
1123  _id_identical_flag[i][j] = false;
1124  }
1125  }
1126 
1127  for (unsigned int i = 0; i < n; ++i)
1128  {
1129  for (auto & blk : meshSubdomains())
1130  comm().set_union(_block_id_mapping[i][blk]);
1131  comm().min(_id_identical_flag[i]);
1132  }
1133  comm().max(_max_ids);
1134  comm().min(_min_ids);
1135 }
std::vector< dof_id_type > _min_ids
Minimum integer ID for each extra element integer.
Definition: MooseMesh.h:1875
unsigned int n_elem_integers() const
std::vector< std::vector< bool > > _id_identical_flag
Flags to indicate whether or not any two extra element integers are the same.
Definition: MooseMesh.h:1877
const Parallel::Communicator & comm() const
auto max(const L &left, const R &right)
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
void min(const T &r, T &o, Request &req) const
std::vector< dof_id_type > _max_ids
Maximum integer ID for each extra element integer.
Definition: MooseMesh.h:1873
subdomain_id_type subdomain_id() const
void max(const T &r, T &o, Request &req) const
std::vector< std::unordered_map< SubdomainID, std::set< dof_id_type > > > _block_id_mapping
Unique element integer IDs for each subdomain and each extra element integers.
Definition: MooseMesh.h:1871
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139
auto min(const L &left, const R &right)
dof_id_type get_extra_integer(const unsigned int index) const
const std::set< SubdomainID > & meshSubdomains() const
Returns a read-only reference to the set of subdomains currently present in the Mesh.
Definition: MooseMesh.C:3211
void set_union(T &data, const unsigned int root_id) const

◆ buildFiniteVolumeInfo()

void MooseMesh::buildFiniteVolumeInfo ( ) const

Builds the face and elem info vectors that store meta-data needed for looping over and doing calculations based on mesh faces and elements in a finite volume setting.

This should only be called when finite volume variables are used in the problem or when the face and elem info objects are necessary for functor-based evaluations.

Definition at line 3779 of file MooseMesh.C.

Referenced by setupFiniteVolumeMeshData().

3780 {
3781  mooseAssert(!Threads::in_threads,
3782  "This routine has not been implemented for threads. Please query this routine before "
3783  "a threaded region or contact a MOOSE developer to discuss.");
3784  _finite_volume_info_dirty = false;
3785 
3786  using Keytype = std::pair<const Elem *, unsigned short int>;
3787 
3788  // create a map from elem/side --> boundary ids
3789  std::vector<std::tuple<dof_id_type, unsigned short int, boundary_id_type>> side_list =
3791  std::map<Keytype, std::set<boundary_id_type>> side_map;
3792  for (auto & [elem_id, side, bc_id] : side_list)
3793  {
3794  const Elem * elem = _mesh->elem_ptr(elem_id);
3795  Keytype key(elem, side);
3796  auto & bc_set = side_map[key];
3797  bc_set.insert(bc_id);
3798  }
3799 
3800  _face_info.clear();
3801  _all_face_info.clear();
3802  _elem_side_to_face_info.clear();
3803 
3804  _elem_to_elem_info.clear();
3805  _elem_info.clear();
3806 
3807  // by performing the element ID comparison check in the below loop, we are ensuring that we never
3808  // double count face contributions. If a face lies along a process boundary, the only process that
3809  // will contribute to both sides of the face residuals/Jacobians will be the process that owns the
3810  // element with the lower ID.
3811  auto begin = getMesh().active_elements_begin();
3812  auto end = getMesh().active_elements_end();
3813 
3814  // We prepare a map connecting the Elem* and the corresponding ElemInfo
3815  // for the active elements.
3816  for (const Elem * elem : as_range(begin, end))
3817  _elem_to_elem_info.emplace(elem->id(), elem);
3818 
3819  dof_id_type face_index = 0;
3820  for (const Elem * elem : as_range(begin, end))
3821  {
3822  for (unsigned int side = 0; side < elem->n_sides(); ++side)
3823  {
3824  // get the neighbor element
3825  const Elem * neighbor = elem->neighbor_ptr(side);
3826 
3827  // Check if the FaceInfo shall belong to the element. If yes,
3828  // create and initialize the FaceInfo. We need this to ensure that
3829  // we do not duplicate FaceInfo-s.
3830  if (Moose::FV::elemHasFaceInfo(*elem, neighbor))
3831  {
3832  mooseAssert(!neighbor || (neighbor->level() < elem->level() ? neighbor->active() : true),
3833  "If the neighbor is coarser than the element, we expect that the neighbor must "
3834  "be active.");
3835 
3836  // We construct the faceInfo using the elementinfo and side index
3837  _all_face_info.emplace_back(&_elem_to_elem_info[elem->id()], side, face_index++);
3838 
3839  auto & fi = _all_face_info.back();
3840 
3841  // get all the sidesets that this face is contained in and cache them
3842  // in the face info.
3843  std::set<boundary_id_type> & boundary_ids = fi.boundaryIDs();
3844  boundary_ids.clear();
3845 
3846  // We initialize the weights/other information in faceInfo. If the neighbor does not exist
3847  // or is remote (so when we are on some sort of mesh boundary), we initialize the ghost
3848  // cell and use it to compute the weights corresponding to the faceInfo.
3849  if (!neighbor || neighbor == libMesh::remote_elem)
3850  fi.computeBoundaryCoefficients();
3851  else
3852  fi.computeInternalCoefficients(&_elem_to_elem_info[neighbor->id()]);
3853 
3854  auto lit = side_map.find(Keytype(&fi.elem(), fi.elemSideID()));
3855  if (lit != side_map.end())
3856  boundary_ids.insert(lit->second.begin(), lit->second.end());
3857 
3858  if (fi.neighborPtr())
3859  {
3860  auto rit = side_map.find(Keytype(fi.neighborPtr(), fi.neighborSideID()));
3861  if (rit != side_map.end())
3862  boundary_ids.insert(rit->second.begin(), rit->second.end());
3863  }
3864  }
3865  }
3866  }
3867 
3868  // Build the local face info and elem_side to face info maps. We need to do this after
3869  // _all_face_info is finished being constructed because emplace_back invalidates all iterators and
3870  // references if ever the new size exceeds capacity
3871  for (auto & fi : _all_face_info)
3872  {
3873  const Elem * const elem = &fi.elem();
3874  const auto side = fi.elemSideID();
3875 
3876 #ifndef NDEBUG
3877  auto pair_it =
3878 #endif
3879  _elem_side_to_face_info.emplace(std::make_pair(elem, side), &fi);
3880  mooseAssert(pair_it.second, "We should be adding unique FaceInfo objects.");
3881 
3882  // We will add the faces on processor boundaries to the list of face infos on each
3883  // associated processor.
3884  if (fi.elem().processor_id() == this->processor_id() ||
3885  (fi.neighborPtr() && (fi.neighborPtr()->processor_id() == this->processor_id())))
3886  _face_info.push_back(&fi);
3887  }
3888 
3889  for (auto & ei : _elem_to_elem_info)
3890  if (ei.second.elem()->processor_id() == this->processor_id())
3891  _elem_info.push_back(&ei.second);
3892 }
std::vector< FaceInfo > _all_face_info
FaceInfo object storing information for face based loops.
Definition: MooseMesh.h:1635
std::vector< const FaceInfo * > _face_info
Holds only those FaceInfo objects that have processor_id equal to this process&#39;s id, e.g.
Definition: MooseMesh.h:1639
bool elemHasFaceInfo(const Elem &elem, const Elem *const neighbor)
This function infers based on elements if the faceinfo between them belongs to the element or not...
Definition: FVUtils.C:21
bool _finite_volume_info_dirty
Definition: MooseMesh.h:1646
std::vector< std::tuple< dof_id_type, unsigned short int, boundary_id_type > > buildActiveSideList() const
Calls BoundaryInfo::build_active_side_list.
Definition: MooseMesh.C:3055
std::vector< const ElemInfo * > _elem_info
Holds only those ElemInfo objects that have processor_id equal to this process&#39;s id, e.g.
Definition: MooseMesh.h:1631
std::unordered_map< std::pair< const Elem *, unsigned int >, FaceInfo * > _elem_side_to_face_info
Map from elem-side pair to FaceInfo.
Definition: MooseMesh.h:1643
dof_id_type id() const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
SimpleRange< IndexType > as_range(const std::pair< IndexType, IndexType > &p)
std::unordered_map< dof_id_type, ElemInfo > _elem_to_elem_info
Map connecting elems with their corresponding ElemInfo, we use the element ID as the key...
Definition: MooseMesh.h:1627
virtual unsigned int n_sides() const=0
const Elem * neighbor_ptr(unsigned int i) const
unsigned int level() const
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1459
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139
processor_id_type processor_id() const
bool active() const
uint8_t dof_id_type
const RemoteElem * remote_elem

◆ buildHRefinementAndCoarseningMaps()

void MooseMesh::buildHRefinementAndCoarseningMaps ( Assembly assembly)
private

Definition at line 2349 of file MooseMesh.C.

Referenced by buildRefinementAndCoarseningMaps().

2350 {
2351  std::map<ElemType, Elem *> canonical_elems;
2352 
2353  // First, loop over all elements and find a canonical element for each type
2354  // Doing it this way guarantees that this is going to work in parallel
2355  for (const auto & elem : getMesh().element_ptr_range()) // TODO: Thread this
2356  {
2357  ElemType type = elem->type();
2358 
2359  if (canonical_elems.find(type) ==
2360  canonical_elems.end()) // If we haven't seen this type of elem before save it
2361  canonical_elems[type] = elem;
2362  else
2363  {
2364  Elem * stored = canonical_elems[type];
2365  if (elem->id() < stored->id()) // Arbitrarily keep the one with a lower id
2366  canonical_elems[type] = elem;
2367  }
2368  }
2369  // Now build the maps using these templates
2370  // Note: This MUST be done NOT threaded!
2371  for (const auto & can_it : canonical_elems)
2372  {
2373  Elem * elem = can_it.second;
2374 
2375  // Need to do this just once to get the right qrules put in place
2376  assembly->setCurrentSubdomainID(elem->subdomain_id());
2377  assembly->reinit(elem);
2378  assembly->reinit(elem, 0);
2379  auto && qrule = assembly->writeableQRule();
2380  auto && qrule_face = assembly->writeableQRuleFace();
2381 
2382  // Volume to volume projection for refinement
2383  buildRefinementMap(*elem, *qrule, *qrule_face, -1, -1, -1);
2384 
2385  // Volume to volume projection for coarsening
2386  buildCoarseningMap(*elem, *qrule, *qrule_face, -1);
2387 
2388  // Map the sides of children
2389  for (unsigned int side = 0; side < elem->n_sides(); side++)
2390  {
2391  // Side to side for sides that match parent's sides
2392  buildRefinementMap(*elem, *qrule, *qrule_face, side, -1, side);
2393  buildCoarseningMap(*elem, *qrule, *qrule_face, side);
2394  }
2395 
2396  // Child side to parent volume mapping for "internal" child sides
2397  for (unsigned int child = 0; child < elem->n_children(); ++child)
2398  for (unsigned int side = 0; side < elem->n_sides();
2399  ++side) // Assume children have the same number of sides!
2400  if (!elem->is_child_on_side(child, side)) // Otherwise we already computed that map
2401  buildRefinementMap(*elem, *qrule, *qrule_face, -1, child, side);
2402  }
2403 }
ElemType
libMesh::QBase *const & writeableQRule()
Returns the reference to the current quadrature being used.
Definition: Assembly.h:241
virtual bool is_child_on_side(const unsigned int c, const unsigned int s) const=0
virtual unsigned int n_children() const=0
void reinit(const Elem *elem)
Reinitialize objects (JxW, q_points, ...) for an elements.
dof_id_type id() const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
const std::string & type() const
Get the type of this class.
Definition: MooseBase.h:93
void buildRefinementMap(const Elem &elem, libMesh::QBase &qrule, libMesh::QBase &qrule_face, int parent_side, int child, int child_side)
Build the refinement map for a given element type.
Definition: MooseMesh.C:2510
void buildCoarseningMap(const Elem &elem, libMesh::QBase &qrule, libMesh::QBase &qrule_face, int input_side)
Build the coarsening map for a given element type.
Definition: MooseMesh.C:2589
virtual unsigned int n_sides() const=0
void setCurrentSubdomainID(SubdomainID i)
set the current subdomain ID
Definition: Assembly.h:424
subdomain_id_type subdomain_id() const
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139
virtual ElemType type() const=0
libMesh::QBase *const & writeableQRuleFace()
Returns the reference to the current quadrature being used on a current face.
Definition: Assembly.h:328

◆ buildLowerDMesh()

void MooseMesh::buildLowerDMesh ( )
private

Build lower-d mesh for all sides.

Definition at line 673 of file MooseMesh.C.

Referenced by init().

674 {
675  auto & mesh = getMesh();
676 
677  if (!mesh.is_serial())
678  mooseError(
679  "Hybrid finite element method must use replicated mesh.\nCurrently lower-dimensional mesh "
680  "does not support mesh re-partitioning and a debug assertion being hit related with "
681  "neighbors of lower-dimensional element, with distributed mesh.");
682 
683  // Lower-D element build requires neighboring element information
684  if (!mesh.is_prepared())
686 
687  // maximum number of sides of all elements
688  unsigned int max_n_sides = 0;
689 
690  // remove existing lower-d element first
691  std::set<Elem *> deleteable_elems;
692  for (auto & elem : mesh.element_ptr_range())
695  deleteable_elems.insert(elem);
696  else if (elem->n_sides() > max_n_sides)
697  max_n_sides = elem->n_sides();
698 
699  for (auto & elem : deleteable_elems)
701  for (const auto & id : _lower_d_interior_blocks)
702  _mesh_subdomains.erase(id);
703  for (const auto & id : _lower_d_boundary_blocks)
704  _mesh_subdomains.erase(id);
705  _lower_d_interior_blocks.clear();
706  _lower_d_boundary_blocks.clear();
707 
708  mesh.comm().max(max_n_sides);
709 
710  deleteable_elems.clear();
711 
712  // get all side types
713  std::set<int> interior_side_types;
714  std::set<int> boundary_side_types;
715  for (const auto & elem : mesh.active_element_ptr_range())
716  for (const auto side : elem->side_index_range())
717  {
718  Elem * neig = elem->neighbor_ptr(side);
719  std::unique_ptr<Elem> side_elem(elem->build_side_ptr(side));
720  if (neig)
721  interior_side_types.insert(side_elem->type());
722  else
723  boundary_side_types.insert(side_elem->type());
724  }
725  mesh.comm().set_union(interior_side_types);
726  mesh.comm().set_union(boundary_side_types);
727 
728  // assign block ids for different side types
729  std::map<ElemType, SubdomainID> interior_block_ids;
730  std::map<ElemType, SubdomainID> boundary_block_ids;
731  // we assume this id is not used by the mesh
733  for (const auto & tpid : interior_side_types)
734  {
735  const auto type = ElemType(tpid);
736  mesh.subdomain_name(id) = "INTERNAL_SIDE_LOWERD_SUBDOMAIN_" + Utility::enum_to_string(type);
737  interior_block_ids[type] = id;
738  _lower_d_interior_blocks.insert(id);
739  if (_mesh_subdomains.count(id) > 0)
740  mooseError("Trying to add a mesh block with id ", id, " that has existed in the mesh");
741  _mesh_subdomains.insert(id);
742  --id;
743  }
744  for (const auto & tpid : boundary_side_types)
745  {
746  const auto type = ElemType(tpid);
747  mesh.subdomain_name(id) = "BOUNDARY_SIDE_LOWERD_SUBDOMAIN_" + Utility::enum_to_string(type);
748  boundary_block_ids[type] = id;
749  _lower_d_boundary_blocks.insert(id);
750  if (_mesh_subdomains.count(id) > 0)
751  mooseError("Trying to add a mesh block with id ", id, " that has existed in the mesh");
752  _mesh_subdomains.insert(id);
753  --id;
754  }
755 
756  dof_id_type max_elem_id = mesh.max_elem_id();
757  unique_id_type max_unique_id = mesh.parallel_max_unique_id();
758 
759  std::vector<Elem *> side_elems;
761  for (const auto & elem : mesh.active_element_ptr_range())
762  {
763  // skip existing lower-d elements
764  if (elem->interior_parent())
765  continue;
766 
767  for (const auto side : elem->side_index_range())
768  {
769  Elem * neig = elem->neighbor_ptr(side);
770 
771  bool build_side = false;
772  if (!neig)
773  build_side = true;
774  else
775  {
776  mooseAssert(!neig->is_remote(), "We error if the mesh is not serial");
777  if (!neig->active())
778  build_side = true;
779  else if (neig->level() == elem->level() && elem->id() < neig->id())
780  build_side = true;
781  }
782 
783  if (build_side)
784  {
785  std::unique_ptr<Elem> side_elem(elem->build_side_ptr(side));
786 
787  // The side will be added with the same processor id as the parent.
788  side_elem->processor_id() = elem->processor_id();
789 
790  // Add subdomain ID
791  if (neig)
792  side_elem->subdomain_id() = interior_block_ids.at(side_elem->type());
793  else
794  side_elem->subdomain_id() = boundary_block_ids.at(side_elem->type());
795 
796  // set ids consistently across processors (these ids will be temporary)
797  side_elem->set_id(max_elem_id + elem->id() * max_n_sides + side);
798  side_elem->set_unique_id(max_unique_id + elem->id() * max_n_sides + side);
799 
800  // Also assign the side's interior parent, so it is always
801  // easy to figure out the Elem we came from.
802  // Note: the interior parent could be a ghost element.
803  side_elem->set_interior_parent(elem);
804 
805  side_elems.push_back(side_elem.release());
806 
807  // add link between higher d element to lower d element
808  auto pair = std::make_pair(elem, side);
809  auto link = std::make_pair(pair, side_elems.back());
810  auto ilink = std::make_pair(side_elems.back(), side);
813  }
814  }
815  }
816 
817  // finally, add the lower-dimensional element to the mesh
818  // Note: lower-d interior element will exist on a processor if its associated interior
819  // parent exists on a processor whether or not being a ghost. Lower-d elements will
820  // get its interior parent's processor id.
821  for (auto & elem : side_elems)
822  mesh.add_elem(elem);
823 
824  // we do all the stuff in prepare_for_use such as renumber_nodes_and_elements(),
825  // update_parallel_id_counts(), cache_elem_dims(), etc. except partitioning here.
826  const bool skip_partitioning_old = mesh.skip_partitioning();
827  mesh.skip_partitioning(true);
828  // Finding neighbors is ambiguous for lower-dimensional elements on interior faces
829  mesh.allow_find_neighbors(false);
831  mesh.skip_partitioning(skip_partitioning_old);
832 }
ElemType
bool is_prepared() const
virtual unique_id_type parallel_max_unique_id() const=0
const Elem * interior_parent() const
IntRange< unsigned short > side_index_range() const
void skip_partitioning(bool skip)
virtual std::unique_ptr< Elem > build_side_ptr(const unsigned int i)=0
std::unordered_map< const Elem *, unsigned short int > _lower_d_elem_to_higher_d_elem_side
Definition: MooseMesh.h:1843
void prepare_for_use(const bool skip_renumber_nodes_and_elements, const bool skip_find_neighbors)
MeshBase & mesh
std::unordered_map< std::pair< const Elem *, unsigned short int >, const Elem * > _higher_d_elem_side_to_lower_d_elem
Holds a map from a high-order element side to its corresponding lower-d element.
Definition: MooseMesh.h:1842
const Parallel::Communicator & comm() const
std::set< SubdomainID > _lower_d_boundary_blocks
Mesh blocks for boundary lower-d elements in different types.
Definition: MooseMesh.h:1839
std::set< SubdomainID > _lower_d_interior_blocks
Mesh blocks for interior lower-d elements in different types.
Definition: MooseMesh.h:1837
virtual bool is_serial() const
static const subdomain_id_type invalid_subdomain_id
virtual void find_neighbors(const bool reset_remote_elements=false, const bool reset_current_list=true)=0
virtual void delete_elem(Elem *e)=0
dof_id_type id() const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
virtual Elem * add_elem(Elem *e)=0
virtual dof_id_type max_elem_id() const=0
const std::string & type() const
Get the type of this class.
Definition: MooseBase.h:93
virtual bool is_remote() const
std::string & subdomain_name(subdomain_id_type id)
void allow_find_neighbors(bool allow)
std::string enum_to_string(const T e)
virtual unsigned int n_sides() const=0
const Elem * neighbor_ptr(unsigned int i) const
unsigned int level() const
subdomain_id_type subdomain_id() const
void max(const T &r, T &o, Request &req) const
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139
std::set< SubdomainID > _mesh_subdomains
A set of subdomain IDs currently present in the mesh.
Definition: MooseMesh.h:1547
bool active() const
processor_id_type processor_id() const
uint8_t unique_id_type
uint8_t dof_id_type
void set_union(T &data, const unsigned int root_id) const

◆ buildMesh()

virtual void MooseMesh::buildMesh ( )
pure virtual

Must be overridden by child classes.

This is where the Mesh object is actually created and filled in.

Implemented in MFEMMesh, PatternedMesh, StitchedMesh, MeshGeneratorMesh, AnnularMesh, ConcentricCircleMesh, GeneratedMesh, RinglebMesh, SpiralAnnularMesh, ImageMesh, FileMesh, and TiledMesh.

Referenced by init().

◆ buildMeshBaseObject()

std::unique_ptr< MeshBase > MooseMesh::buildMeshBaseObject ( unsigned int  dim = libMesh::invalid_uint)

Method to construct a libMesh::MeshBase object that is normally set and used by the MooseMesh object during the "init()" phase.

If the parameter dim is not provided, then its value will be taken from the input file mesh block.

Definition at line 2894 of file MooseMesh.C.

Referenced by MeshGenerator::buildMeshBaseObject(), and init().

2895 {
2896  std::unique_ptr<MeshBase> mesh;
2898  mesh = buildTypedMesh<DistributedMesh>(dim);
2899  else
2900  mesh = buildTypedMesh<ReplicatedMesh>(dim);
2901 
2902  return mesh;
2903 }
MeshBase & mesh
static constexpr std::size_t dim
This is the dimension of all vector and tensor datastructures used in MOOSE.
Definition: Moose.h:159
bool _use_distributed_mesh
False by default.
Definition: MooseMesh.h:1454

◆ buildNodeList()

void MooseMesh::buildNodeList ( )

Calls BoundaryInfo::build_node_list()/build_side_list() and makes separate copies of Nodes/Elems in those lists.

Allocates memory which is cleaned up in the freeBndNodes()/freeBndElems() functions.

Definition at line 1040 of file MooseMesh.C.

Referenced by update().

1041 {
1042  TIME_SECTION("buildNodeList", 5, "Building Node List");
1043 
1044  freeBndNodes();
1045 
1046  auto bc_tuples = getMesh().get_boundary_info().build_node_list();
1047 
1048  int n = bc_tuples.size();
1049  _bnd_nodes.clear();
1050  _bnd_nodes.reserve(n);
1051  for (const auto & t : bc_tuples)
1052  {
1053  auto node_id = std::get<0>(t);
1054  auto bc_id = std::get<1>(t);
1055 
1056  _bnd_nodes.push_back(new BndNode(getMesh().node_ptr(node_id), bc_id));
1057  _node_set_nodes[bc_id].push_back(node_id);
1058  _bnd_node_ids[bc_id].insert(node_id);
1059  }
1060 
1061  _bnd_nodes.reserve(_bnd_nodes.size() + _extra_bnd_nodes.size());
1062  for (unsigned int i = 0; i < _extra_bnd_nodes.size(); i++)
1063  {
1064  BndNode * bnode = new BndNode(_extra_bnd_nodes[i]._node, _extra_bnd_nodes[i]._bnd_id);
1065  _bnd_nodes.push_back(bnode);
1066  _bnd_node_ids[std::get<1>(bc_tuples[i])].insert(_extra_bnd_nodes[i]._node->id());
1067  }
1068 
1069  // This sort is here so that boundary conditions are always applied in the same order
1070  std::sort(_bnd_nodes.begin(), _bnd_nodes.end(), BndNodeCompare());
1071 }
Helper class for sorting Boundary Nodes so that we always get the same order of application for bound...
Definition: MooseMesh.C:1016
std::map< boundary_id_type, std::set< dof_id_type > > _bnd_node_ids
Map of sets of node IDs in each boundary.
Definition: MooseMesh.h:1568
std::map< boundary_id_type, std::vector< dof_id_type > > _node_set_nodes
list of nodes that belongs to a specified nodeset: indexing [nodeset_id] -> [array of node ids] ...
Definition: MooseMesh.h:1587
const BoundaryInfo & get_boundary_info() const
void build_node_list(std::vector< dof_id_type > &node_id_list, std::vector< boundary_id_type > &bc_id_list) const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
std::vector< BndNode * > _bnd_nodes
array of boundary nodes
Definition: MooseMesh.h:1564
std::vector< BndNode > _extra_bnd_nodes
Definition: MooseMesh.h:1581
void freeBndNodes()
Definition: MooseMesh.C:386

◆ buildNodeListFromSideList()

void MooseMesh::buildNodeListFromSideList ( )

Calls BoundaryInfo::build_node_list_from_side_list().

Definition at line 3023 of file MooseMesh.C.

Referenced by prepare(), and update().

3024 {
3027 }
void build_node_list_from_side_list()
const BoundaryInfo & get_boundary_info() const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
bool _construct_node_list_from_side_list
Whether or not to allow generation of nodesets from sidesets.
Definition: MooseMesh.h:1853

◆ buildPeriodicNodeMap()

void MooseMesh::buildPeriodicNodeMap ( std::multimap< dof_id_type, dof_id_type > &  periodic_node_map,
unsigned int  var_number,
libMesh::PeriodicBoundaries pbs 
) const

This routine builds a multimap of boundary ids to matching boundary ids across all periodic boundaries in the system.

Definition at line 1851 of file MooseMesh.C.

1854 {
1855  TIME_SECTION("buildPeriodicNodeMap", 5);
1856 
1857  // clear existing map
1858  periodic_node_map.clear();
1859 
1860  // get periodic nodes
1861  std::vector<PeriodicNodeInfo> periodic_nodes;
1862  for (const auto & t : getMesh().get_boundary_info().build_node_list())
1863  {
1864  // unfortunately libMesh does not give us a pointer, so we have to look it up ourselves
1865  auto node = _mesh->node_ptr(std::get<0>(t));
1866  mooseAssert(node != nullptr,
1867  "libMesh::BoundaryInfo::build_node_list() returned an ID for a non-existing node");
1868  auto bc_id = std::get<1>(t);
1869  periodic_nodes.emplace_back(node, bc_id);
1870  }
1871 
1872  // sort by boundary id
1873  std::sort(periodic_nodes.begin(),
1874  periodic_nodes.end(),
1875  [](const PeriodicNodeInfo & a, const PeriodicNodeInfo & b) -> bool
1876  { return a.second > b.second; });
1877 
1878  // build kd-tree
1879  using KDTreeType = nanoflann::KDTreeSingleIndexAdaptor<
1880  nanoflann::L2_Simple_Adaptor<Real, PointListAdaptor<PeriodicNodeInfo>, Real, std::size_t>,
1882  LIBMESH_DIM,
1883  std::size_t>;
1884  const unsigned int max_leaf_size = 20; // slightly affects runtime
1885  auto point_list =
1886  PointListAdaptor<PeriodicNodeInfo>(periodic_nodes.begin(), periodic_nodes.end());
1887  auto kd_tree = std::make_unique<KDTreeType>(
1888  LIBMESH_DIM, point_list, nanoflann::KDTreeSingleIndexAdaptorParams(max_leaf_size));
1889  mooseAssert(kd_tree != nullptr, "KDTree was not properly initialized.");
1890  kd_tree->buildIndex();
1891 
1892  // data structures for kd-tree search
1893  nanoflann::SearchParameters search_params;
1894  std::vector<nanoflann::ResultItem<std::size_t, Real>> ret_matches;
1895 
1896  // iterate over periodic nodes (boundary ids are in contiguous blocks)
1897  libMesh::PeriodicBoundaryBase * periodic = nullptr;
1898  BoundaryID current_bc_id = BoundaryInfo::invalid_id;
1899  for (auto & pair : periodic_nodes)
1900  {
1901  // entering a new block of boundary IDs
1902  if (pair.second != current_bc_id)
1903  {
1904  current_bc_id = pair.second;
1905  periodic = pbs->boundary(current_bc_id);
1906  if (periodic && !periodic->is_my_variable(var_number))
1907  periodic = nullptr;
1908  }
1909 
1910  // variable is not periodic at this node, skip
1911  if (!periodic)
1912  continue;
1913 
1914  // clear result buffer
1915  ret_matches.clear();
1916 
1917  // id of the current node
1918  const auto id = pair.first->id();
1919 
1920  // position where we expect a periodic partner for the current node and boundary
1921  Point search_point = periodic->get_corresponding_pos(*pair.first);
1922 
1923  // search at the expected point
1924  kd_tree->radiusSearch(&(search_point)(0), libMesh::TOLERANCE, ret_matches, search_params);
1925  for (auto & match_pair : ret_matches)
1926  {
1927  const auto & match = periodic_nodes[match_pair.first];
1928  // add matched node if the boundary id is the corresponding id in the periodic pair
1929  if (match.second == periodic->pairedboundary)
1930  periodic_node_map.emplace(id, match.first->id());
1931  }
1932  }
1933 }
static constexpr Real TOLERANCE
boundary_id_type pairedboundary
PeriodicBoundaryBase * boundary(boundary_id_type id)
virtual Point get_corresponding_pos(const Point &pt) const=0
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
std::pair< const Node *, BoundaryID > PeriodicNodeInfo
Helper type for building periodic node maps.
Definition: MooseMesh.h:1085
boundary_id_type BoundaryID
DIE A HORRIBLE DEATH HERE typedef LIBMESH_DEFAULT_SCALAR_TYPE Real
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1459
bool is_my_variable(unsigned int var_num) const
virtual const Node & node(const dof_id_type i) const
Various accessors (pointers/references) for Node "i".
Definition: MooseMesh.C:835
SearchParams SearchParameters

◆ buildPeriodicNodeSets()

void MooseMesh::buildPeriodicNodeSets ( std::map< BoundaryID, std::set< dof_id_type >> &  periodic_node_sets,
unsigned int  var_number,
libMesh::PeriodicBoundaries pbs 
) const

This routine builds a datastructure of node ids organized by periodic boundary ids.

Definition at line 1936 of file MooseMesh.C.

1939 {
1940  TIME_SECTION("buildPeriodicNodeSets", 5);
1941 
1942  periodic_node_sets.clear();
1943 
1944  // Loop over all the boundary nodes adding the periodic nodes to the appropriate set
1945  for (const auto & t : getMesh().get_boundary_info().build_node_list())
1946  {
1947  auto node_id = std::get<0>(t);
1948  auto bc_id = std::get<1>(t);
1949 
1950  // Is this current node on a known periodic boundary?
1951  if (periodic_node_sets.find(bc_id) != periodic_node_sets.end())
1952  periodic_node_sets[bc_id].insert(node_id);
1953  else // This still might be a periodic node but we just haven't seen this boundary_id yet
1954  {
1955  const libMesh::PeriodicBoundaryBase * periodic = pbs->boundary(bc_id);
1956  if (periodic && periodic->is_my_variable(var_number))
1957  periodic_node_sets[bc_id].insert(node_id);
1958  }
1959  }
1960 }
PeriodicBoundaryBase * boundary(boundary_id_type id)
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
bool is_my_variable(unsigned int var_num) const

◆ buildPRefinementAndCoarseningMaps()

void MooseMesh::buildPRefinementAndCoarseningMaps ( Assembly assembly)

Definition at line 2406 of file MooseMesh.C.

Referenced by buildRefinementAndCoarseningMaps(), and FEProblemBase::meshChanged().

2407 {
2412 
2413  std::map<ElemType, std::pair<Elem *, unsigned int>> elems_and_max_p_level;
2414 
2415  for (const auto & elem : getMesh().active_element_ptr_range())
2416  {
2417  const auto type = elem->type();
2418  auto & [picked_elem, max_p_level] = elems_and_max_p_level[type];
2419  if (!picked_elem)
2420  picked_elem = elem;
2421  max_p_level = std::max(max_p_level, elem->p_level());
2422  }
2423 
2424  // The only requirement on the FEType is that it can be arbitrarily p-refined
2425  const FEType p_refinable_fe_type(CONSTANT, libMesh::MONOMIAL);
2426  std::vector<Point> volume_ref_points_coarse, volume_ref_points_fine, face_ref_points_coarse,
2427  face_ref_points_fine;
2428  std::vector<unsigned int> p_levels;
2429 
2430  for (auto & [elem_type, elem_p_level_pair] : elems_and_max_p_level)
2431  {
2432  auto & [moose_elem, max_p_level] = elem_p_level_pair;
2433  const auto dim = moose_elem->dim();
2434  // Need to do this just once to get the right qrules put in place
2435  assembly->setCurrentSubdomainID(moose_elem->subdomain_id());
2436  assembly->reinit(moose_elem);
2437  assembly->reinit(moose_elem, 0);
2438  auto & qrule = assembly->writeableQRule();
2439  auto & qrule_face = assembly->writeableQRuleFace();
2440 
2441  libMesh::Parallel::Communicator self_comm{};
2442  ReplicatedMesh mesh(self_comm);
2444  for (const auto & nd : moose_elem->node_ref_range())
2445  mesh.add_point(nd);
2446 
2447  Elem * const elem = mesh.add_elem(Elem::build(elem_type).release());
2448  for (const auto i : elem->node_index_range())
2449  elem->set_node(i, mesh.node_ptr(i));
2450 
2451  std::unique_ptr<FEBase> fe_face(FEBase::build(dim, p_refinable_fe_type));
2452  fe_face->get_phi();
2453  const auto & face_phys_points = fe_face->get_xyz();
2454  fe_face->attach_quadrature_rule(qrule_face);
2455 
2456  qrule->init(*elem);
2457  volume_ref_points_coarse = qrule->get_points();
2458  fe_face->reinit(elem, (unsigned int)0);
2459  libMesh::FEMap::inverse_map(dim, elem, face_phys_points, face_ref_points_coarse);
2460 
2461  p_levels.resize(max_p_level + 1);
2462  std::iota(p_levels.begin(), p_levels.end(), 0);
2463  libMesh::MeshRefinement mesh_refinement(mesh);
2464 
2465  for (const auto p_level : p_levels)
2466  {
2467  mesh_refinement.uniformly_p_refine(1);
2468  qrule->init(*elem);
2469  volume_ref_points_fine = qrule->get_points();
2470  fe_face->reinit(elem, (unsigned int)0);
2471  libMesh::FEMap::inverse_map(dim, elem, face_phys_points, face_ref_points_fine);
2472 
2473  const auto map_key = std::make_pair(elem_type, p_level);
2474  auto & volume_refine_map = _elem_type_to_p_refinement_map[map_key];
2475  auto & face_refine_map = _elem_type_to_p_refinement_side_map[map_key];
2476  auto & volume_coarsen_map = _elem_type_to_p_coarsening_map[map_key];
2477  auto & face_coarsen_map = _elem_type_to_p_coarsening_side_map[map_key];
2478 
2479  auto fill_maps = [this](const auto & coarse_ref_points,
2480  const auto & fine_ref_points,
2481  auto & coarsen_map,
2482  auto & refine_map)
2483  {
2484  mapPoints(fine_ref_points, coarse_ref_points, refine_map);
2485  mapPoints(coarse_ref_points, fine_ref_points, coarsen_map);
2486  };
2487 
2488  fill_maps(
2489  volume_ref_points_coarse, volume_ref_points_fine, volume_coarsen_map, volume_refine_map);
2490  fill_maps(face_ref_points_coarse, face_ref_points_fine, face_coarsen_map, face_refine_map);
2491 
2492  // With this level's maps filled our fine points now become our coarse points
2493  volume_ref_points_fine.swap(volume_ref_points_coarse);
2494  face_ref_points_fine.swap(face_ref_points_coarse);
2495  }
2496  }
2497 }
std::unique_ptr< FEGenericBase< Real > > build(const unsigned int dim, const FEType &fet)
virtual Node *& set_node(const unsigned int i)
libMesh::QBase *const & writeableQRule()
Returns the reference to the current quadrature being used.
Definition: Assembly.h:241
static Point inverse_map(const unsigned int dim, const Elem *elem, const Point &p, const Real tolerance=TOLERANCE, const bool secure=true, const bool extra_checks=true)
MeshBase & mesh
static constexpr std::size_t dim
This is the dimension of all vector and tensor datastructures used in MOOSE.
Definition: Moose.h:159
unsigned int p_level() const
std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap > > _elem_type_to_p_coarsening_side_map
Definition: MooseMesh.h:1815
virtual Node * add_point(const Point &p, const dof_id_type id=DofObject::invalid_id, const processor_id_type proc_id=DofObject::invalid_processor_id)=0
void reinit(const Elem *elem)
Reinitialize objects (JxW, q_points, ...) for an elements.
auto max(const L &left, const R &right)
void mapPoints(const std::vector< Point > &from, const std::vector< Point > &to, std::vector< QpMap > &qp_map)
Find the closest points that map "from" to "to" and fill up "qp_map".
Definition: MooseMesh.C:2628
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
virtual Elem * add_elem(Elem *e)=0
const std::string & type() const
Get the type of this class.
Definition: MooseBase.h:93
std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap > > _elem_type_to_p_refinement_side_map
Definition: MooseMesh.h:1789
std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap > > _elem_type_to_p_coarsening_map
Definition: MooseMesh.h:1813
void set_mesh_dimension(unsigned char d)
void setCurrentSubdomainID(SubdomainID i)
set the current subdomain ID
Definition: Assembly.h:424
std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap > > _elem_type_to_p_refinement_map
Definition: MooseMesh.h:1787
IntRange< unsigned short > node_index_range() const
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139
virtual const Node * node_ptr(const dof_id_type i) const=0
virtual ElemType type() const=0
libMesh::QBase *const & writeableQRuleFace()
Returns the reference to the current quadrature being used on a current face.
Definition: Assembly.h:328

◆ buildRefinementAndCoarseningMaps()

void MooseMesh::buildRefinementAndCoarseningMaps ( Assembly assembly)

Create the refinement and coarsening maps necessary for projection of stateful material properties when using adaptivity.

Parameters
assemblyPointer to the Assembly object for this Mesh.

Definition at line 2500 of file MooseMesh.C.

Referenced by FEProblemBase::initialSetup().

2501 {
2502  TIME_SECTION("buildRefinementAndCoarseningMaps", 5, "Building Refinement And Coarsening Maps");
2503  if (doingPRefinement())
2505  else
2507 }
void buildHRefinementAndCoarseningMaps(Assembly *assembly)
Definition: MooseMesh.C:2349
bool doingPRefinement() const
Query whether we have p-refinement.
Definition: MooseMesh.h:1378
void buildPRefinementAndCoarseningMaps(Assembly *assembly)
Definition: MooseMesh.C:2406

◆ buildRefinementMap()

void MooseMesh::buildRefinementMap ( const Elem elem,
libMesh::QBase qrule,
libMesh::QBase qrule_face,
int  parent_side,
int  child,
int  child_side 
)
private

Build the refinement map for a given element type.

This will tell you what quadrature points to copy from and to for stateful material properties on newly created elements from Adaptivity.

Parameters
elemThe element that represents the element type you need the refinement map for.
qruleThe quadrature rule in use.
qrule_faceThe current face quadrature rule
parent_sideThe side of the parent to map (-1 if not mapping parent sides)
childThe child number (-1 if not mapping child internal sides)
child_sideThe side number of the child (-1 if not mapping sides)

Definition at line 2510 of file MooseMesh.C.

Referenced by buildHRefinementAndCoarseningMaps().

2516 {
2517  TIME_SECTION("buildRefinementMap", 5, "Building Refinement Map");
2518 
2519  if (child == -1) // Doing volume mapping or parent side mapping
2520  {
2521  mooseAssert(parent_side == child_side,
2522  "Parent side must match child_side if not passing a specific child!");
2523 
2524  std::pair<int, ElemType> the_pair(parent_side, elem.type());
2525 
2526  if (_elem_type_to_refinement_map.find(the_pair) != _elem_type_to_refinement_map.end())
2527  mooseError("Already built a qp refinement map!");
2528 
2529  std::vector<std::pair<unsigned int, QpMap>> coarsen_map;
2530  std::vector<std::vector<QpMap>> & refinement_map = _elem_type_to_refinement_map[the_pair];
2532  &elem, qrule, qrule_face, refinement_map, coarsen_map, parent_side, child, child_side);
2533  }
2534  else // Need to map a child side to parent volume qps
2535  {
2536  std::pair<int, int> child_pair(child, child_side);
2537 
2540  _elem_type_to_child_side_refinement_map[elem.type()].find(child_pair) !=
2542  mooseError("Already built a qp refinement map!");
2543 
2544  std::vector<std::pair<unsigned int, QpMap>> coarsen_map;
2545  std::vector<std::vector<QpMap>> & refinement_map =
2548  &elem, qrule, qrule_face, refinement_map, coarsen_map, parent_side, child, child_side);
2549  }
2550 }
std::map< libMesh::ElemType, std::map< std::pair< int, int >, std::vector< std::vector< QpMap > > > > _elem_type_to_child_side_refinement_map
Holds mappings for "internal" child sides to parent volume. The second key is (child, child_side).
Definition: MooseMesh.h:1793
std::map< std::pair< int, libMesh::ElemType >, std::vector< std::vector< QpMap > > > _elem_type_to_refinement_map
Holds mappings for volume to volume and parent side to child side Map key:
Definition: MooseMesh.h:1784
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271
void findAdaptivityQpMaps(const Elem *template_elem, libMesh::QBase &qrule, libMesh::QBase &qrule_face, std::vector< std::vector< QpMap >> &refinement_map, std::vector< std::pair< unsigned int, QpMap >> &coarsen_map, int parent_side, int child, int child_side)
Given an elem type, get maps that tell us what qp&#39;s are closest to each other between a parent and it...
Definition: MooseMesh.C:2659
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139
virtual ElemType type() const=0

◆ buildSideList() [1/2]

void MooseMesh::buildSideList ( std::vector< dof_id_type > &  el,
std::vector< unsigned short int > &  sl,
std::vector< boundary_id_type > &  il 
)

Calls BoundaryInfo::build_side_list().

Fills in the three passed vectors with list logical (element, side, id) tuples. This function will eventually be deprecated in favor of the one below, which returns a single std::vector of (elem-id, side-id, bc-id) tuples instead.

Definition at line 3030 of file MooseMesh.C.

Referenced by InterfaceQpUserObjectBase::initialSetup().

3033 {
3034 #ifdef LIBMESH_ENABLE_DEPRECATED
3035  mooseDeprecated("The version of MooseMesh::buildSideList() taking three arguments is "
3036  "deprecated, call the version that returns a vector of tuples instead.");
3037  getMesh().get_boundary_info().build_side_list(el, sl, il);
3038 #else
3039  libmesh_ignore(el);
3040  libmesh_ignore(sl);
3041  libmesh_ignore(il);
3042  mooseError("The version of MooseMesh::buildSideList() taking three "
3043  "arguments is not available in your version of libmesh, call the "
3044  "version that returns a vector of tuples instead.");
3045 #endif
3046 }
const BoundaryInfo & get_boundary_info() const
void build_side_list(std::vector< dof_id_type > &element_id_list, std::vector< unsigned short int > &side_list, std::vector< boundary_id_type > &bc_id_list) const
void libmesh_ignore(const Args &...)
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
void mooseDeprecated(Args &&... args) const
Definition: MooseBase.h:314
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271

◆ buildSideList() [2/2]

std::vector< std::tuple< dof_id_type, unsigned short int, boundary_id_type > > MooseMesh::buildSideList ( )

As above, but uses the non-deprecated std::tuple interface.

Definition at line 3049 of file MooseMesh.C.

3050 {
3052 }
const BoundaryInfo & get_boundary_info() const
void build_side_list(std::vector< dof_id_type > &element_id_list, std::vector< unsigned short int > &side_list, std::vector< boundary_id_type > &bc_id_list) const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488

◆ buildTypedMesh()

template<typename T >
std::unique_ptr< T > MooseMesh::buildTypedMesh ( unsigned int  dim = libMesh::invalid_uint)

Shortcut method to construct a unique pointer to a libMesh mesh instance.

The created derived-from-MeshBase object will have its allow_remote_element_removal flag set to whatever our value is. We will also attach any geometric RelationshipManagers that have been requested by our simulation objects to the MeshBase object. If the parameter dim is not provided, then its value will be taken from the input file mesh block.

Definition at line 2133 of file MooseMesh.h.

Referenced by MeshGenerator::buildDistributedMesh(), and MeshGenerator::buildReplicatedMesh().

2134 {
2135  // If the requested mesh type to build doesn't match our current value for _use_distributed_mesh,
2136  // then we need to make sure to make our state consistent because other objects, like the periodic
2137  // boundary condition action, will be querying isDistributedMesh()
2138  if (_use_distributed_mesh != std::is_same<T, libMesh::DistributedMesh>::value)
2139  {
2140  if (getMeshPtr())
2141  mooseError("A MooseMesh object is being asked to build a libMesh mesh that is a different "
2142  "parallel type than the libMesh mesh that it wraps. This is not allowed. Please "
2143  "create another MooseMesh object to wrap the new libMesh mesh");
2144  setParallelType(MeshType<T>::value);
2145  }
2146 
2147  if (dim == libMesh::invalid_uint)
2148  {
2149  if (isParamValid("dim"))
2150  dim = getParam<MooseEnum>("dim");
2151  else
2152  // Legacy selection of the default for the 'dim' parameter
2153  dim = 1;
2154  }
2155 
2156  auto mesh = std::make_unique<T>(_communicator, dim);
2157 
2158  if (!getParam<bool>("allow_renumbering"))
2159  mesh->allow_renumbering(false);
2160 
2161  mesh->allow_remote_element_removal(_allow_remote_element_removal);
2162  _app.attachRelationshipManagers(*mesh, *this);
2163 
2165  {
2166  // Check of partitioner is supplied (not allowed if custom partitioner is used)
2167  if (!parameters().isParamSetByAddParam("partitioner"))
2168  mooseError("If partitioner block is provided, partitioner keyword cannot be used!");
2169  // Set custom partitioner
2170  if (!_custom_partitioner.get())
2171  mooseError("Custom partitioner requested but not set!");
2172  mesh->partitioner() = _custom_partitioner->clone();
2173  }
2174  else
2175  setPartitionerHelper(mesh.get());
2176 
2177  return mesh;
2178 }
const unsigned int invalid_uint
void setParallelType(ParallelType parallel_type)
Allow to change parallel type.
Definition: MooseMesh.h:2187
bool _custom_partitioner_requested
Definition: MooseMesh.h:1472
const InputParameters & parameters() const
Get the parameters of the object.
Definition: MooseBase.h:131
MeshBase & mesh
static constexpr std::size_t dim
This is the dimension of all vector and tensor datastructures used in MOOSE.
Definition: Moose.h:159
const Parallel::Communicator & _communicator
void setPartitionerHelper(MeshBase *mesh=nullptr)
Definition: MooseMesh.C:3668
void attachRelationshipManagers(Moose::RelationshipManagerType rm_type, bool attach_geometric_rm_final=false)
Attach the relationship managers of the given type Note: Geometric relationship managers that are sup...
Definition: MooseApp.C:3277
const MeshBase * getMeshPtr() const
Definition: MooseMesh.C:3482
bool _use_distributed_mesh
False by default.
Definition: MooseMesh.h:1454
bool _allow_remote_element_removal
Whether to allow removal of remote elements.
Definition: MooseMesh.h:1859
MooseApp & _app
The MOOSE application this is associated with.
Definition: MooseBase.h:357
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271
bool isParamValid(const std::string &name) const
Test if the supplied parameter is valid.
Definition: MooseBase.h:199
std::unique_ptr< libMesh::Partitioner > _custom_partitioner
The custom partitioner.
Definition: MooseMesh.h:1471

◆ cacheChangedLists()

void MooseMesh::cacheChangedLists ( )

Cache information about what elements were refined and coarsened in the previous step.

Definition at line 928 of file MooseMesh.C.

Referenced by FEProblemBase::meshChanged().

929 {
930  TIME_SECTION("cacheChangedLists", 5, "Caching Changed Lists");
931 
932  ConstElemRange elem_range(getMesh().local_elements_begin(), getMesh().local_elements_end(), 1);
933  CacheChangedListsThread cclt(*this);
934  Threads::parallel_reduce(elem_range, cclt);
935 
937 
938  _refined_elements = std::make_unique<ConstElemPointerRange>(cclt._refined_elements.begin(),
939  cclt._refined_elements.end());
940  _coarsened_elements = std::make_unique<ConstElemPointerRange>(cclt._coarsened_elements.begin(),
941  cclt._coarsened_elements.end());
942  _coarsened_element_children = cclt._coarsened_element_children;
943 }
void parallel_reduce(const Range &range, Body &body, const Partitioner &)
std::unique_ptr< ConstElemPointerRange > _refined_elements
The elements that were just refined.
Definition: MooseMesh.h:1506
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
std::unique_ptr< ConstElemPointerRange > _coarsened_elements
The elements that were just coarsened.
Definition: MooseMesh.h:1509
std::map< const Elem *, std::vector< const Elem * > > _coarsened_element_children
Map of Parent elements to child elements for elements that were just coarsened.
Definition: MooseMesh.h:1516

◆ cacheFaceInfoVariableOwnership()

void MooseMesh::cacheFaceInfoVariableOwnership ( ) const

Cache if variables live on the elements connected by the FaceInfo objects.

The following paragraph of code assigns the VarFaceNeighbors

  1. The face is an internal face of this variable if it is defined on the elem and neighbor subdomains
  2. The face is an invalid face of this variable if it is neither defined on the elem nor the neighbor subdomains
  3. If not 1. or 2. then this is a boundary for this variable and the else clause applies

Definition at line 3981 of file MooseMesh.C.

Referenced by setupFiniteVolumeMeshData().

3982 {
3983  mooseAssert(
3984  !Threads::in_threads,
3985  "Performing writes to faceInfo variable association maps. This must be done unthreaded!");
3986 
3987  const unsigned int num_eqs = _app.feProblem().es().n_systems();
3988 
3989  auto face_lambda = [this](const SubdomainID elem_subdomain_id,
3990  const SubdomainID neighbor_subdomain_id,
3991  SystemBase & sys,
3992  std::vector<std::vector<FaceInfo::VarFaceNeighbors>> & face_type_vector)
3993  {
3994  face_type_vector[sys.number()].resize(sys.nVariables(), FaceInfo::VarFaceNeighbors::NEITHER);
3995  const auto & variables = sys.getVariables(0);
3996 
3997  for (const auto & var : variables)
3998  {
3999  const unsigned int var_num = var->number();
4000  const unsigned int sys_num = var->sys().number();
4001  std::set<SubdomainID> var_subdomains = var->blockIDs();
4011  bool var_defined_elem = var_subdomains.find(elem_subdomain_id) != var_subdomains.end();
4012  bool var_defined_neighbor =
4013  var_subdomains.find(neighbor_subdomain_id) != var_subdomains.end();
4014  if (var_defined_elem && var_defined_neighbor)
4015  face_type_vector[sys_num][var_num] = FaceInfo::VarFaceNeighbors::BOTH;
4016  else if (!var_defined_elem && !var_defined_neighbor)
4017  face_type_vector[sys_num][var_num] = FaceInfo::VarFaceNeighbors::NEITHER;
4018  else
4019  {
4020  // this is a boundary face for this variable, set elem or neighbor
4021  if (var_defined_elem)
4022  face_type_vector[sys_num][var_num] = FaceInfo::VarFaceNeighbors::ELEM;
4023  else if (var_defined_neighbor)
4024  face_type_vector[sys_num][var_num] = FaceInfo::VarFaceNeighbors::NEIGHBOR;
4025  else
4026  mooseError("Should never get here");
4027  }
4028  }
4029  };
4030 
4031  // We loop through the faces and check if they are internal, boundary or external to
4032  // the variables in the problem
4033  for (FaceInfo & face : _all_face_info)
4034  {
4035  const SubdomainID elem_subdomain_id = face.elemSubdomainID();
4036  const SubdomainID neighbor_subdomain_id = face.neighborSubdomainID();
4037 
4038  auto & face_type_vector = face.faceType();
4039 
4040  face_type_vector.clear();
4041  face_type_vector.resize(num_eqs);
4042 
4043  // First, we check the variables in the solver systems (linear/nonlinear)
4044  for (const auto i : make_range(_app.feProblem().numSolverSystems()))
4045  face_lambda(elem_subdomain_id,
4046  neighbor_subdomain_id,
4048  face_type_vector);
4049 
4050  // Then we check the variables in the auxiliary system
4051  face_lambda(elem_subdomain_id,
4052  neighbor_subdomain_id,
4054  face_type_vector);
4055  }
4056 }
std::vector< FaceInfo > _all_face_info
FaceInfo object storing information for face based loops.
Definition: MooseMesh.h:1635
unsigned int n_systems() const
Base class for a system (of equations)
Definition: SystemBase.h:84
FEProblemBase & feProblem() const
Definition: MooseApp.C:2000
This data structure is used to store geometric and variable related metadata about each cell face in ...
Definition: FaceInfo.h:36
virtual libMesh::EquationSystems & es() override
MooseApp & _app
The MOOSE application this is associated with.
Definition: MooseBase.h:357
AuxiliarySystem & getAuxiliarySystem()
IntRange< T > make_range(T beg, T end)
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271
SolverSystem & getSolverSystem(unsigned int sys_num)
Get non-constant reference to a solver system.
virtual std::size_t numSolverSystems() const override

◆ cacheFVElementalDoFs()

void MooseMesh::cacheFVElementalDoFs ( ) const

Cache the DoF indices for FV variables on each element.

These indices are used to speed up the setup loops of finite volume systems.

Definition at line 4059 of file MooseMesh.C.

Referenced by setupFiniteVolumeMeshData().

4060 {
4061  mooseAssert(!Threads::in_threads,
4062  "Performing writes to elemInfo dof indices. This must be done unthreaded!");
4063 
4064  auto elem_lambda = [](const ElemInfo & elem_info,
4065  SystemBase & sys,
4066  std::vector<std::vector<dof_id_type>> & dof_vector)
4067  {
4068  if (sys.nFVVariables())
4069  {
4070  dof_vector[sys.number()].resize(sys.nVariables(), libMesh::DofObject::invalid_id);
4071  const auto & variables = sys.getVariables(0);
4072 
4073  for (const auto & var : variables)
4074  if (var->isFV())
4075  {
4076  const auto & var_subdomains = var->blockIDs();
4077 
4078  // We will only cache for FV variables and if they live on the current subdomain
4079  if (var_subdomains.find(elem_info.subdomain_id()) != var_subdomains.end())
4080  {
4081  std::vector<dof_id_type> indices;
4082  var->dofMap().dof_indices(elem_info.elem(), indices, var->number());
4083  mooseAssert(indices.size() == 1, "We expect to have only one dof per element!");
4084  dof_vector[sys.number()][var->number()] = indices[0];
4085  }
4086  }
4087  }
4088  };
4089 
4090  const unsigned int num_eqs = _app.feProblem().es().n_systems();
4091 
4092  // We loop through the elements in the mesh and cache the dof indices
4093  // for the corresponding variables.
4094  for (auto & ei_pair : _elem_to_elem_info)
4095  {
4096  auto & elem_info = ei_pair.second;
4097  auto & dof_vector = elem_info.dofIndices();
4098 
4099  dof_vector.clear();
4100  dof_vector.resize(num_eqs);
4101 
4102  // First, we cache the dof indices for the variables in the solver systems (linear, nonlinear)
4103  for (const auto i : make_range(_app.feProblem().numSolverSystems()))
4104  elem_lambda(elem_info, _app.feProblem().getSolverSystem(i), dof_vector);
4105 
4106  // Then we cache the dof indices for the auxvariables
4107  elem_lambda(elem_info, _app.feProblem().getAuxiliarySystem(), dof_vector);
4108  }
4109 }
unsigned int n_systems() const
const Elem * elem() const
Definition: ElemInfo.h:34
Base class for a system (of equations)
Definition: SystemBase.h:84
FEProblemBase & feProblem() const
Definition: MooseApp.C:2000
virtual libMesh::EquationSystems & es() override
static const dof_id_type invalid_id
MooseApp & _app
The MOOSE application this is associated with.
Definition: MooseBase.h:357
AuxiliarySystem & getAuxiliarySystem()
std::unordered_map< dof_id_type, ElemInfo > _elem_to_elem_info
Map connecting elems with their corresponding ElemInfo, we use the element ID as the key...
Definition: MooseMesh.h:1627
const std::vector< std::vector< dof_id_type > > & dofIndices() const
Definition: ElemInfo.h:39
IntRange< T > make_range(T beg, T end)
SolverSystem & getSolverSystem(unsigned int sys_num)
Get non-constant reference to a solver system.
Class used for caching additional information for elements such as the volume and centroid...
Definition: ElemInfo.h:25
virtual std::size_t numSolverSystems() const override
SubdomainID subdomain_id() const
We return the subdomain ID of the corresponding libmesh element.
Definition: ElemInfo.h:43

◆ cacheInfo()

void MooseMesh::cacheInfo ( )
protected

Definition at line 1445 of file MooseMesh.C.

Referenced by update().

1446 {
1447  TIME_SECTION("cacheInfo", 3);
1448 
1449  _has_lower_d = false;
1450  _sub_to_data.clear();
1452  _block_node_list.clear();
1455  _lower_d_interior_blocks.clear();
1456  _lower_d_boundary_blocks.clear();
1457 
1458  auto & mesh = getMesh();
1459 
1460  // TODO: Thread this!
1461  for (const auto & elem : mesh.element_ptr_range())
1462  {
1463  const Elem * ip_elem = elem->interior_parent();
1464 
1465  if (ip_elem)
1466  {
1467  if (elem->active())
1468  _sub_to_data[elem->subdomain_id()].is_lower_d = true;
1469  unsigned int ip_side = ip_elem->which_side_am_i(elem);
1470 
1471  // For some grid sequencing tests: ip_side == libMesh::invalid_uint
1472  if (ip_side != libMesh::invalid_uint)
1473  {
1474  auto pair = std::make_pair(ip_elem, ip_side);
1476  std::pair<std::pair<const Elem *, unsigned short int>, const Elem *>(pair, elem));
1478  std::pair<const Elem *, unsigned short int>(elem, ip_side));
1479 
1480  auto id = elem->subdomain_id();
1481  if (ip_elem->neighbor_ptr(ip_side))
1482  {
1483  if (mesh.subdomain_name(id).find("INTERNAL_SIDE_LOWERD_SUBDOMAIN_") != std::string::npos)
1484  _lower_d_interior_blocks.insert(id);
1485  }
1486  else
1487  {
1488  if (mesh.subdomain_name(id).find("BOUNDARY_SIDE_LOWERD_SUBDOMAIN_") != std::string::npos)
1489  _lower_d_boundary_blocks.insert(id);
1490  }
1491  }
1492  }
1493 
1494  for (unsigned int nd = 0; nd < elem->n_nodes(); ++nd)
1495  {
1496  Node & node = *elem->node_ptr(nd);
1497  _block_node_list[node.id()].insert(elem->subdomain_id());
1498  }
1499  }
1502 
1503  for (const auto & elem : mesh.active_local_element_ptr_range())
1504  {
1505  SubdomainID subdomain_id = elem->subdomain_id();
1506  auto & sub_data = _sub_to_data[subdomain_id];
1507  for (unsigned int side = 0; side < elem->n_sides(); side++)
1508  {
1509  std::vector<BoundaryID> boundary_ids = getBoundaryIDs(elem, side);
1510  sub_data.boundary_ids.insert(boundary_ids.begin(), boundary_ids.end());
1511 
1512  Elem * neig = elem->neighbor_ptr(side);
1513  if (neig)
1514  {
1515  _neighbor_subdomain_boundary_ids[neig->subdomain_id()].insert(boundary_ids.begin(),
1516  boundary_ids.end());
1517  SubdomainID neighbor_subdomain_id = neig->subdomain_id();
1518  if (neighbor_subdomain_id != subdomain_id)
1519  sub_data.neighbor_subs.insert(neighbor_subdomain_id);
1520  }
1521  }
1522  }
1523 
1524  for (const auto blk_id : _mesh_subdomains)
1525  {
1526  auto & sub_data = _sub_to_data[blk_id];
1527  _communicator.set_union(sub_data.neighbor_subs);
1528  _communicator.set_union(sub_data.boundary_ids);
1529  _communicator.max(sub_data.is_lower_d);
1530  if (sub_data.is_lower_d)
1531  _has_lower_d = true;
1533  }
1534 }
const std::set< BoundaryID > & getBoundaryIDs() const
Returns a const reference to a set of all user-specified boundary IDs.
Definition: MooseMesh.C:3017
const unsigned int invalid_uint
const Elem * interior_parent() const
std::unordered_map< const Elem *, unsigned short int > _lower_d_elem_to_higher_d_elem_side
Definition: MooseMesh.h:1843
unsigned int which_side_am_i(const Elem *e) const
MeshBase & mesh
std::unordered_map< std::pair< const Elem *, unsigned short int >, const Elem * > _higher_d_elem_side_to_lower_d_elem
Holds a map from a high-order element side to its corresponding lower-d element.
Definition: MooseMesh.h:1842
bool _has_lower_d
Whether there are any lower-dimensional blocks that are manifolds of higher-dimensional block faces...
Definition: MooseMesh.h:1847
std::map< dof_id_type, std::set< SubdomainID > > _block_node_list
list of nodes that belongs to a specified block (domain)
Definition: MooseMesh.h:1584
const Parallel::Communicator & _communicator
std::set< SubdomainID > _lower_d_boundary_blocks
Mesh blocks for boundary lower-d elements in different types.
Definition: MooseMesh.h:1839
std::unordered_map< SubdomainID, std::set< BoundaryID > > _neighbor_subdomain_boundary_ids
Holds a map from neighbor subomdain ids to the boundary ids that are attached to it.
Definition: MooseMesh.h:1834
std::set< SubdomainID > _lower_d_interior_blocks
Mesh blocks for interior lower-d elements in different types.
Definition: MooseMesh.h:1837
dof_id_type id() const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
virtual unsigned int n_nodes() const=0
std::string & subdomain_name(subdomain_id_type id)
virtual unsigned int n_sides() const=0
const Elem * neighbor_ptr(unsigned int i) const
subdomain_id_type subdomain_id() const
void max(const T &r, T &o, Request &req) const
const Node * node_ptr(const unsigned int i) const
virtual const Node & node(const dof_id_type i) const
Various accessors (pointers/references) for Node "i".
Definition: MooseMesh.C:835
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139
std::set< SubdomainID > _mesh_subdomains
A set of subdomain IDs currently present in the mesh.
Definition: MooseMesh.h:1547
std::unordered_map< SubdomainID, SubdomainData > _sub_to_data
Holds a map from subdomain ids to associated data.
Definition: MooseMesh.h:1831
bool active() const
void set_union(T &data, const unsigned int root_id) const

◆ callMooseError() [1/2]

void MooseBase::callMooseError ( std::string  msg,
const bool  with_prefix,
const hit::Node *  node = nullptr 
) const
inherited

External method for calling moose error with added object context.

Parameters
msgThe message
with_prefixIf true, add the prefix from messagePrefix(), which is the object information (type, name, etc)
nodeOptional hit node to add file path context as a prefix

Definition at line 105 of file MooseBase.C.

Referenced by InputParameters::callMooseError(), MooseBase::mooseDocumentedError(), MooseBase::mooseError(), and MooseBase::mooseErrorNonPrefixed().

108 {
109  callMooseError(&_app, _pars, msg, with_prefix, node);
110 }
const InputParameters & _pars
The object&#39;s parameters.
Definition: MooseBase.h:366
void callMooseError(std::string msg, const bool with_prefix, const hit::Node *node=nullptr) const
External method for calling moose error with added object context.
Definition: MooseBase.C:105
MooseApp & _app
The MOOSE application this is associated with.
Definition: MooseBase.h:357

◆ callMooseError() [2/2]

void MooseBase::callMooseError ( MooseApp *const  app,
const InputParameters params,
std::string  msg,
const bool  with_prefix,
const hit::Node *  node 
)
staticinherited

External method for calling moose error with added object context.

Needed so that objects without the MooseBase context (InputParameters) can call errors with context

Parameters
appThe app pointer (if available); adds multiapp context and clears the console
paramsThe parameters, needed to obtain object information
msgThe message
with_prefixIf true, add the prefix from messagePrefix(), which is the object information (type, name, etc)
nodeOptional hit node to add file path context as a prefix

Definition at line 113 of file MooseBase.C.

118 {
119  if (!node)
120  node = MooseBase::getHitNode(params);
121 
122  std::string multiapp_prefix = "";
123  if (app)
124  {
125  if (!app->isUltimateMaster())
126  multiapp_prefix = app->name();
128  }
129 
130  if (with_prefix)
131  // False here because the hit context will get processed by the node
132  msg = messagePrefix(params, false) + msg;
133 
134  moose::internal::mooseErrorRaw(msg, multiapp_prefix, node);
135 }
bool isUltimateMaster() const
Whether or not this app is the ultimate master app.
Definition: MooseApp.h:820
const std::string & name() const
Get the name of the class.
Definition: MooseBase.h:103
void mooseErrorRaw(std::string msg, const std::string &prefix="", const hit::Node *node=nullptr)
Main callback for emitting a moose error.
Definition: MooseError.C:53
void mooseConsole()
Send current output buffer to Console output objects.
const hit::Node * getHitNode() const
Definition: MooseBase.h:136
OutputWarehouse & getOutputWarehouse()
Get the OutputWarehouse objects.
Definition: MooseApp.C:2482
std::string messagePrefix(const bool hit_prefix=true) const
Definition: MooseBase.h:256

◆ changeBoundaryId() [1/2]

void MooseMesh::changeBoundaryId ( const boundary_id_type  old_id,
const boundary_id_type  new_id,
bool  delete_prev 
)

Change all the boundary IDs for a given side from old_id to new_id.

If delete_prev is true, also actually remove the side with old_id from the BoundaryInfo object.

Definition at line 2800 of file MooseMesh.C.

2803 {
2804  TIME_SECTION("changeBoundaryId", 6);
2805  changeBoundaryId(getMesh(), old_id, new_id, delete_prev);
2806 }
void changeBoundaryId(const boundary_id_type old_id, const boundary_id_type new_id, bool delete_prev)
Change all the boundary IDs for a given side from old_id to new_id.
Definition: MooseMesh.C:2800
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488

◆ changeBoundaryId() [2/2]

static void MooseMesh::changeBoundaryId ( MeshBase &  mesh,
const boundary_id_type  old_id,
const boundary_id_type  new_id,
bool  delete_prev 
)
static

Change all the boundary IDs for a given side from old_id to new_id for the given mesh.

If delete_prev is true, also actually remove the side with old_id from the BoundaryInfo object.

◆ checkCoordinateSystems()

void MooseMesh::checkCoordinateSystems ( )

Performs a sanity check for every element in the mesh.

If an element dimension is 3 and the corresponding coordinate system is RZ, then this will error. If an element dimension is greater than 1 and the corresponding system is RPSHERICAL then this will error

Definition at line 4347 of file MooseMesh.C.

Referenced by FEProblemBase::checkCoordinateSystems().

4348 {
4349  for (const auto & elem : getMesh().element_ptr_range())
4350  {
4351  SubdomainID sid = elem->subdomain_id();
4352  if (_coord_sys[sid] == Moose::COORD_RZ && elem->dim() == 3)
4353  mooseError("An RZ coordinate system was requested for subdomain " + Moose::stringify(sid) +
4354  " which contains 3D elements.");
4355  if (_coord_sys[sid] == Moose::COORD_RSPHERICAL && elem->dim() > 1)
4356  mooseError("An RSPHERICAL coordinate system was requested for subdomain " +
4357  Moose::stringify(sid) + " which contains 2D or 3D elements.");
4358  }
4359 }
std::map< SubdomainID, Moose::CoordinateSystemType > & _coord_sys
Type of coordinate system per subdomain.
Definition: MooseMesh.h:1901
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
std::string stringify(const T &t)
conversion to string
Definition: Conversion.h:64
subdomain_id_type subdomain_id() const
virtual unsigned short dim() const=0
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139

◆ checkDuplicateSubdomainNames()

void MooseMesh::checkDuplicateSubdomainNames ( )
private

Loop through all subdomain IDs and check if there is name duplication used for the subdomains with same ID.

Throw out an error if any name duplication is found.

Definition at line 4377 of file MooseMesh.C.

Referenced by prepare().

4378 {
4379  std::map<SubdomainName, SubdomainID> subdomain;
4380  for (const auto & sbd_id : _mesh_subdomains)
4381  {
4382  std::string sub_name = getSubdomainName(sbd_id);
4383  if (!sub_name.empty() && subdomain.count(sub_name) > 0)
4384  mooseError("The subdomain name ",
4385  sub_name,
4386  " is used for both subdomain with ID=",
4387  subdomain[sub_name],
4388  " and ID=",
4389  sbd_id,
4390  ", Please rename one of them!");
4391  else
4392  subdomain[sub_name] = sbd_id;
4393  }
4394 }
const std::string & getSubdomainName(SubdomainID subdomain_id) const
Return the name of a block given an id.
Definition: MooseMesh.C:1801
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271
std::set< SubdomainID > _mesh_subdomains
A set of subdomain IDs currently present in the mesh.
Definition: MooseMesh.h:1547

◆ clearQuadratureNodes()

void MooseMesh::clearQuadratureNodes ( )

Clear out any existing quadrature nodes.

Most likely called before re-adding them.

Definition at line 1718 of file MooseMesh.C.

Referenced by DisplacedProblem::meshChanged(), GeometricSearchData::reinit(), and ~MooseMesh().

1719 {
1720  // Delete all the quadrature nodes
1721  for (auto & it : _quadrature_nodes)
1722  delete it.second;
1723 
1724  _quadrature_nodes.clear();
1726  _extra_bnd_nodes.clear();
1727 }
std::map< dof_id_type, Node * > _quadrature_nodes
Definition: MooseMesh.h:1578
std::vector< BndNode > _extra_bnd_nodes
Definition: MooseMesh.h:1581
std::map< dof_id_type, std::map< unsigned int, std::map< dof_id_type, Node * > > > _elem_to_side_to_qp_to_quadrature_nodes
Definition: MooseMesh.h:1580

◆ clone()

MooseMesh & MooseMesh::clone ( ) const
virtual

Clone method.

Allocates memory you are responsible to clean up.

Definition at line 2860 of file MooseMesh.C.

Referenced by TiledMesh::buildMesh().

2861 {
2862  mooseError("MooseMesh::clone() is no longer supported, use MooseMesh::safeClone() instead.");
2863 }
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271

◆ coarsenedElementChildren()

const std::vector< const Elem * > & MooseMesh::coarsenedElementChildren ( const Elem elem) const

Get the newly removed children element ids for an element that was just coarsened.

Parameters
elemPointer to the parent element that was coarsened to.
Returns
The child element ids in Elem::child() order.

Definition at line 958 of file MooseMesh.C.

Referenced by FEProblemBase::meshChanged(), ProjectMaterialProperties::onBoundary(), and ProjectMaterialProperties::onElement().

959 {
960  auto elem_to_child_pair = _coarsened_element_children.find(elem);
961  mooseAssert(elem_to_child_pair != _coarsened_element_children.end(), "Missing element in map");
962  return elem_to_child_pair->second;
963 }
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139
std::map< const Elem *, std::vector< const Elem * > > _coarsened_element_children
Map of Parent elements to child elements for elements that were just coarsened.
Definition: MooseMesh.h:1516

◆ coarsenedElementRange()

ConstElemPointerRange * MooseMesh::coarsenedElementRange ( ) const

Return a range that is suitable for threaded execution over elements that were just coarsened.

Note that these are the Parent elements that are now set to be INACTIVE. Their children are the elements that were just removed. Use coarsenedElementChildren() to get the element IDs for the children that were just removed for a particular parent element.

Definition at line 952 of file MooseMesh.C.

Referenced by FEProblemBase::meshChanged().

953 {
954  return _coarsened_elements.get();
955 }
std::unique_ptr< ConstElemPointerRange > _coarsened_elements
The elements that were just coarsened.
Definition: MooseMesh.h:1509

◆ computeFiniteVolumeCoords()

void MooseMesh::computeFiniteVolumeCoords ( ) const

Compute the face coordinate value for all FaceInfo and ElemInfo objects.

'Coordinate' here means a coordinate value associated with the coordinate system. For Cartesian coordinate systems, 'coordinate' is simply '1'; in RZ, '2*pi*r', and in spherical, '4*pi*r^2'

Definition at line 3917 of file MooseMesh.C.

Referenced by setupFiniteVolumeMeshData().

3918 {
3920  mooseError("Trying to compute face- and elem-info coords when the information is dirty");
3921 
3922  for (auto & fi : _all_face_info)
3923  {
3924  // get elem & neighbor elements, and set subdomain ids
3925  const SubdomainID elem_subdomain_id = fi.elemSubdomainID();
3926  const SubdomainID neighbor_subdomain_id = fi.neighborSubdomainID();
3927 
3929  *this, elem_subdomain_id, fi.faceCentroid(), fi.faceCoord(), neighbor_subdomain_id);
3930  }
3931 
3932  for (auto & ei : _elem_to_elem_info)
3934  *this, ei.second.subdomain_id(), ei.second.centroid(), ei.second.coordFactor());
3935 }
std::vector< FaceInfo > _all_face_info
FaceInfo object storing information for face based loops.
Definition: MooseMesh.h:1635
bool _finite_volume_info_dirty
Definition: MooseMesh.h:1646
void coordTransformFactor(const SubProblem &s, SubdomainID sub_id, const P &point, C &factor, SubdomainID neighbor_sub_id=libMesh::Elem::invalid_subdomain_id)
Computes a conversion multiplier for use when computing integraals for the current coordinate system ...
Definition: Assembly.C:41
std::unordered_map< dof_id_type, ElemInfo > _elem_to_elem_info
Map connecting elems with their corresponding ElemInfo, we use the element ID as the key...
Definition: MooseMesh.h:1627
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271

◆ computeMaxPerElemAndSide()

void MooseMesh::computeMaxPerElemAndSide ( )
private

Compute the maximum numbers per element and side.

Definition at line 1074 of file MooseMesh.C.

Referenced by init().

1075 {
1076  auto & mesh = getMesh();
1077 
1078  _max_sides_per_elem = 0;
1079  _max_nodes_per_elem = 0;
1080  _max_nodes_per_side = 0;
1081 
1082  for (auto & elem : as_range(mesh.local_elements_begin(), mesh.local_elements_end()))
1083  {
1086 
1087  for (unsigned int side = 0; side < elem->n_sides(); ++side)
1089  }
1090 
1094 }
unsigned int _max_nodes_per_side
The maximum number of nodes per side.
Definition: MooseMesh.h:1886
unsigned int _max_sides_per_elem
The maximum number of sides per element.
Definition: MooseMesh.h:1880
MeshBase & mesh
const Parallel::Communicator & comm() const
auto max(const L &left, const R &right)
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
virtual unsigned int n_nodes() const=0
SimpleRange< IndexType > as_range(const std::pair< IndexType, IndexType > &p)
virtual unsigned int n_sides() const=0
virtual std::unique_ptr< Elem > side_ptr(unsigned int i)=0
void max(const T &r, T &o, Request &req) const
unsigned int _max_nodes_per_elem
The maximum number of nodes per element.
Definition: MooseMesh.h:1883
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139

◆ connectControllableParams()

void MooseBase::connectControllableParams ( const std::string &  parameter,
const std::string &  object_type,
const std::string &  object_name,
const std::string &  object_parameter 
) const
inherited

Connect controllable parameter of this action with the controllable parameters of the objects added by this action.

Parameters
parameterName of the controllable parameter of this action
object_typeType of the object added by this action.
object_nameName of the object added by this action.
object_parameterName of the parameter of the object.

Definition at line 77 of file MooseBase.C.

81 {
82  auto & factory = _app.getFactory();
83  auto & ip_warehouse = _app.getInputParameterWarehouse();
84 
85  MooseObjectParameterName primary_name(uniqueName(), parameter);
86  const auto base_type = factory.getValidParams(object_type).getBase();
87  MooseObjectParameterName secondary_name(base_type, object_name, object_parameter);
88  ip_warehouse.addControllableParameterConnection(primary_name, secondary_name);
89 
90  const auto & tags = _pars.get<std::vector<std::string>>("control_tags");
91  for (const auto & tag : tags)
92  {
93  if (!tag.empty())
94  {
95  // Only adds the parameter with the different control tags if the derived class
96  // properly registers the parameter to its own syntax
97  MooseObjectParameterName tagged_name(tag, name(), parameter);
98  ip_warehouse.addControllableParameterConnection(
99  tagged_name, secondary_name, /*error_on_empty=*/false);
100  }
101  }
102 }
const InputParameters & _pars
The object&#39;s parameters.
Definition: MooseBase.h:366
std::vector< std::pair< R1, R2 > > get(const std::string &param1, const std::string &param2) const
Combine two vector parameters into a single vector of pairs.
InputParameterWarehouse & getInputParameterWarehouse()
Get the InputParameterWarehouse for MooseObjects.
Definition: MooseApp.C:2940
MooseObjectName uniqueName() const
Definition: MooseBase.C:69
Factory & getFactory()
Retrieve a writable reference to the Factory associated with this App.
Definition: MooseApp.h:401
const std::string & name() const
Get the name of the class.
Definition: MooseBase.h:103
MooseApp & _app
The MOOSE application this is associated with.
Definition: MooseBase.h:357
A class for storing an input parameter name.

◆ coordTransform()

MooseAppCoordTransform & MooseMesh::coordTransform ( )
inline
Returns
the coordinate transformation object that describes how to transform this problem's coordinate system into the canonical/reference coordinate system

Definition at line 1931 of file MooseMesh.h.

Referenced by FEProblemBase::checkProblemIntegrity(), and FEProblemBase::coordTransform().

1932 {
1933  mooseAssert(_coord_transform, "The coordinate transformation object is null.");
1934  return *_coord_transform;
1935 }
std::unique_ptr< MooseAppCoordTransform > _coord_transform
A coordinate transformation object that describes how to transform this problem&#39;s coordinate system i...
Definition: MooseMesh.h:1911

◆ declareManagedRestartableDataWithContext()

template<typename T , typename... Args>
Restartable::ManagedValue< T > Restartable::declareManagedRestartableDataWithContext ( const std::string &  data_name,
void context,
Args &&...  args 
)
protectedinherited

Declares a piece of "managed" restartable data and initialize it.

Here, "managed" restartable data means that the caller can destruct this data upon destruction of the return value of this method. Therefore, this ManagedValue<T> wrapper should survive after the final calls to dataStore() for it. That is... at the very end.

This is needed for objects whose destruction ordering is important, and enables natural c++ destruction in reverse construction order of the object that declares it.

See delcareRestartableData and declareRestartableDataWithContext for more information.

Definition at line 283 of file Restartable.h.

286 {
287  auto & data_ptr =
288  declareRestartableDataHelper<T>(data_name, context, std::forward<Args>(args)...);
289  return Restartable::ManagedValue<T>(data_ptr);
290 }
Wrapper class for restartable data that is "managed.
Definition: Restartable.h:42

◆ declareRecoverableData()

template<typename T , typename... Args>
T & Restartable::declareRecoverableData ( const std::string &  data_name,
Args &&...  args 
)
protectedinherited

Declare a piece of data as "recoverable" and initialize it.

This means that in the event of a restart this piece of data will be restored back to its previous value.

Note - this data will NOT be restored on Restart!

NOTE: This returns a reference! Make sure you store it in a reference!

Parameters
data_nameThe name of the data (usually just use the same name as the member variable)
argsArguments to forward to the constructor of the data

Definition at line 358 of file Restartable.h.

359 {
360  const auto full_name = restartableName(data_name);
361 
363 
364  return declareRestartableDataWithContext<T>(data_name, nullptr, std::forward<Args>(args)...);
365 }
std::string restartableName(const std::string &data_name) const
Gets the name of a piece of restartable data given a data name, adding the system name and object nam...
Definition: Restartable.C:78
void registerRestartableNameWithFilterOnApp(const std::string &name, Moose::RESTARTABLE_FILTER filter)
Helper function for actually registering the restartable data.
Definition: Restartable.C:71

◆ declareRestartableData()

template<typename T , typename... Args>
T & Restartable::declareRestartableData ( const std::string &  data_name,
Args &&...  args 
)
protectedinherited

Declare a piece of data as "restartable" and initialize it.

This means that in the event of a restart this piece of data will be restored back to its previous value.

NOTE: This returns a reference! Make sure you store it in a reference!

Parameters
data_nameThe name of the data (usually just use the same name as the member variable)
argsArguments to forward to the constructor of the data

Definition at line 276 of file Restartable.h.

277 {
278  return declareRestartableDataWithContext<T>(data_name, nullptr, std::forward<Args>(args)...);
279 }

◆ declareRestartableDataWithContext()

template<typename T , typename... Args>
T & Restartable::declareRestartableDataWithContext ( const std::string &  data_name,
void context,
Args &&...  args 
)
protectedinherited

Declare a piece of data as "restartable" and initialize it.

This means that in the event of a restart this piece of data will be restored back to its previous value.

NOTE: This returns a reference! Make sure you store it in a reference!

Parameters
data_nameThe name of the data (usually just use the same name as the member variable)
contextContext pointer that will be passed to the load and store functions
argsArguments to forward to the constructor of the data

Definition at line 301 of file Restartable.h.

304 {
305  return declareRestartableDataHelper<T>(data_name, context, std::forward<Args>(args)...).set();
306 }

◆ declareRestartableDataWithObjectName()

template<typename T , typename... Args>
T & Restartable::declareRestartableDataWithObjectName ( const std::string &  data_name,
const std::string &  object_name,
Args &&...  args 
)
protectedinherited

Declare a piece of data as "restartable".

This means that in the event of a restart this piece of data will be restored back to its previous value.

NOTE: This returns a reference! Make sure you store it in a reference!

Parameters
data_nameThe name of the data (usually just use the same name as the member variable)
object_nameA supplied name for the object that is declaring this data.
argsArguments to forward to the constructor of the data

Definition at line 330 of file Restartable.h.

333 {
334  return declareRestartableDataWithObjectNameWithContext<T>(
335  data_name, object_name, nullptr, std::forward<Args>(args)...);
336 }

◆ declareRestartableDataWithObjectNameWithContext()

template<typename T , typename... Args>
T & Restartable::declareRestartableDataWithObjectNameWithContext ( const std::string &  data_name,
const std::string &  object_name,
void context,
Args &&...  args 
)
protectedinherited

Declare a piece of data as "restartable".

This means that in the event of a restart this piece of data will be restored back to its previous value.

NOTE: This returns a reference! Make sure you store it in a reference!

Parameters
data_nameThe name of the data (usually just use the same name as the member variable)
object_nameA supplied name for the object that is declaring this data.
contextContext pointer that will be passed to the load and store functions
argsArguments to forward to the constructor of the data

Definition at line 340 of file Restartable.h.

344 {
345  std::string old_name = _restartable_name;
346 
347  _restartable_name = object_name;
348 
349  T & value = declareRestartableDataWithContext<T>(data_name, context, std::forward<Args>(args)...);
350 
351  _restartable_name = old_name;
352 
353  return value;
354 }
std::string _restartable_name
The name of the object.
Definition: Restartable.h:250
Real value(unsigned n, unsigned alpha, unsigned beta, Real x)

◆ deleteRemoteElements()

void MooseMesh::deleteRemoteElements ( )

Delete remote elements.

Definition at line 3969 of file MooseMesh.C.

3970 {
3972  if (!_mesh)
3973  mooseError("Cannot delete remote elements because we have not yet attached a MeshBase");
3974 
3975  _mesh->allow_remote_element_removal(true);
3976 
3977  _mesh->delete_remote_elements();
3978 }
bool _allow_remote_element_removal
Whether to allow removal of remote elements.
Definition: MooseMesh.h:1859
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1459
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271

◆ detectOrthogonalDimRanges()

bool MooseMesh::detectOrthogonalDimRanges ( Real  tol = 1e-6)

This routine determines whether the Mesh is a regular orthogonal mesh (i.e.

square in 2D, cubic in 3D). If it is, then we can use a number of convenience functions when periodic boundary conditions are applied. This routine populates the _range vector which is necessary for these convenience functions.

Note: This routine can potentially identify meshes with concave faces that still "fit" in the convex hull of the corresponding regular orthogonal mesh. This case is highly unlikely in practice and if a user does this, well.... release the kicker!

Definition at line 1963 of file MooseMesh.C.

Referenced by AddPeriodicBCAction::autoTranslationBoundaries(), and prepare().

1964 {
1965  TIME_SECTION("detectOrthogonalDimRanges", 5);
1966 
1968  return true;
1969 
1970  std::vector<Real> min(3, std::numeric_limits<Real>::max());
1971  std::vector<Real> max(3, std::numeric_limits<Real>::min());
1972  unsigned int dim = getMesh().mesh_dimension();
1973 
1974  // Find the bounding box of our mesh
1975  for (const auto & node : getMesh().node_ptr_range())
1976  // Check all coordinates, we don't know if this mesh might be lying in a higher dim even if the
1977  // mesh dimension is lower.
1978  for (const auto i : make_range(Moose::dim))
1979  {
1980  if ((*node)(i) < min[i])
1981  min[i] = (*node)(i);
1982  if ((*node)(i) > max[i])
1983  max[i] = (*node)(i);
1984  }
1985 
1986  this->comm().max(max);
1987  this->comm().min(min);
1988 
1989  _extreme_nodes.resize(8); // 2^LIBMESH_DIM
1990  // Now make sure that there are actual nodes at all of the extremes
1991  std::vector<bool> extreme_matches(8, false);
1992  std::vector<unsigned int> comp_map(3);
1993  for (const auto & node : getMesh().node_ptr_range())
1994  {
1995  // See if the current node is located at one of the extremes
1996  unsigned int coord_match = 0;
1997 
1998  for (const auto i : make_range(Moose::dim))
1999  {
2000  if (std::abs((*node)(i)-min[i]) < tol)
2001  {
2002  comp_map[i] = MIN;
2003  ++coord_match;
2004  }
2005  else if (std::abs((*node)(i)-max[i]) < tol)
2006  {
2007  comp_map[i] = MAX;
2008  ++coord_match;
2009  }
2010  }
2011 
2012  if (coord_match == LIBMESH_DIM) // Found a coordinate at one of the extremes
2013  {
2014  _extreme_nodes[comp_map[X] * 4 + comp_map[Y] * 2 + comp_map[Z]] = node;
2015  extreme_matches[comp_map[X] * 4 + comp_map[Y] * 2 + comp_map[Z]] = true;
2016  }
2017  }
2018 
2019  // See if we matched all of the extremes for the mesh dimension
2020  this->comm().max(extreme_matches);
2021  if (std::count(extreme_matches.begin(), extreme_matches.end(), true) == (1 << dim))
2022  _regular_orthogonal_mesh = true;
2023 
2024  // Set the bounds
2025  _bounds.resize(LIBMESH_DIM);
2026  for (const auto i : make_range(Moose::dim))
2027  {
2028  _bounds[i].resize(2);
2029  _bounds[i][MIN] = min[i];
2030  _bounds[i][MAX] = max[i];
2031  }
2032 
2033  return _regular_orthogonal_mesh;
2034 }
std::vector< std::vector< Real > > _bounds
The bounds in each dimension of the mesh for regular orthogonal meshes.
Definition: MooseMesh.h:1611
MetaPhysicL::DualNumber< V, D, asd > abs(const MetaPhysicL::DualNumber< V, D, asd > &a)
Definition: EigenADReal.h:42
std::vector< Node * > _extreme_nodes
A vector containing the nodes at the corners of a regular orthogonal mesh.
Definition: MooseMesh.h:1665
static constexpr std::size_t dim
This is the dimension of all vector and tensor datastructures used in MOOSE.
Definition: Moose.h:159
const Parallel::Communicator & comm() const
auto max(const L &left, const R &right)
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
void min(const T &r, T &o, Request &req) const
void max(const T &r, T &o, Request &req) const
IntRange< T > make_range(T beg, T end)
virtual const Node & node(const dof_id_type i) const
Various accessors (pointers/references) for Node "i".
Definition: MooseMesh.C:835
unsigned int mesh_dimension() const
auto min(const L &left, const R &right)
bool _regular_orthogonal_mesh
Boolean indicating whether this mesh was detected to be regular and orthogonal.
Definition: MooseMesh.h:1608

◆ detectPairedSidesets()

void MooseMesh::detectPairedSidesets ( )
private

This routine detects paired sidesets of a regular orthogonal mesh (.i.e.

parallel sidesets "across" from one and other). The _paired_boundary datastructure is populated with this information.

Definition at line 2037 of file MooseMesh.C.

Referenced by getPairedBoundaryMapping().

2038 {
2039  TIME_SECTION("detectPairedSidesets", 5);
2040 
2041  // Loop over level-0 elements (since boundary condition information
2042  // is only directly stored for them) and find sidesets with normals
2043  // that point in the -x, +x, -y, +y, and -z, +z direction. If there
2044  // is a unique sideset id for each direction, then the paired
2045  // sidesets consist of (-x,+x), (-y,+y), (-z,+z). If there are
2046  // multiple sideset ids for a given direction, then we can't pick a
2047  // single pair for that direction. In that case, we'll just return
2048  // as was done in the original algorithm.
2049 
2050  // Points used for direction comparison
2051  const Point minus_x(-1, 0, 0), plus_x(1, 0, 0), minus_y(0, -1, 0), plus_y(0, 1, 0),
2052  minus_z(0, 0, -1), plus_z(0, 0, 1);
2053 
2054  // we need to test all element dimensions from dim down to 1
2055  const unsigned int dim = getMesh().mesh_dimension();
2056 
2057  // boundary id sets for elements of different dimensions
2058  std::vector<std::set<BoundaryID>> minus_x_ids(dim), plus_x_ids(dim), minus_y_ids(dim),
2059  plus_y_ids(dim), minus_z_ids(dim), plus_z_ids(dim);
2060 
2061  std::vector<std::unique_ptr<FEBase>> fe_faces(dim);
2062  std::vector<std::unique_ptr<libMesh::QGauss>> qfaces(dim);
2063  for (unsigned side_dim = 0; side_dim < dim; ++side_dim)
2064  {
2065  // Face is assumed to be flat, therefore normal is assumed to be
2066  // constant over the face, therefore only compute it at 1 qp.
2067  qfaces[side_dim] = std::unique_ptr<libMesh::QGauss>(new libMesh::QGauss(side_dim, CONSTANT));
2068 
2069  // A first-order Lagrange FE for the face.
2070  fe_faces[side_dim] = FEBase::build(side_dim + 1, FEType(FIRST, libMesh::LAGRANGE));
2071  fe_faces[side_dim]->attach_quadrature_rule(qfaces[side_dim].get());
2072  }
2073 
2074  // We need this to get boundary ids for each boundary face we encounter.
2075  BoundaryInfo & boundary_info = getMesh().get_boundary_info();
2076  std::vector<boundary_id_type> face_ids;
2077 
2078  for (auto & elem : as_range(getMesh().level_elements_begin(0), getMesh().level_elements_end(0)))
2079  {
2080  // dimension of the current element and its normals
2081  unsigned int side_dim = elem->dim() - 1;
2082  const std::vector<Point> & normals = fe_faces[side_dim]->get_normals();
2083 
2084  // loop over element sides
2085  for (unsigned int s = 0; s < elem->n_sides(); s++)
2086  {
2087  // If side is on the boundary
2088  if (elem->neighbor_ptr(s) == nullptr)
2089  {
2090  std::unique_ptr<Elem> side = elem->build_side_ptr(s);
2091 
2092  fe_faces[side_dim]->reinit(elem, s);
2093 
2094  // Get the boundary ID(s) for this side. If there is more
2095  // than 1 boundary id, then we already can't determine a
2096  // unique pairing of sides in this direction, but we'll just
2097  // keep going to keep the logic simple.
2098  boundary_info.boundary_ids(elem, s, face_ids);
2099 
2100  // x-direction faces
2101  if (normals[0].absolute_fuzzy_equals(minus_x))
2102  minus_x_ids[side_dim].insert(face_ids.begin(), face_ids.end());
2103  else if (normals[0].absolute_fuzzy_equals(plus_x))
2104  plus_x_ids[side_dim].insert(face_ids.begin(), face_ids.end());
2105 
2106  // y-direction faces
2107  else if (normals[0].absolute_fuzzy_equals(minus_y))
2108  minus_y_ids[side_dim].insert(face_ids.begin(), face_ids.end());
2109  else if (normals[0].absolute_fuzzy_equals(plus_y))
2110  plus_y_ids[side_dim].insert(face_ids.begin(), face_ids.end());
2111 
2112  // z-direction faces
2113  else if (normals[0].absolute_fuzzy_equals(minus_z))
2114  minus_z_ids[side_dim].insert(face_ids.begin(), face_ids.end());
2115  else if (normals[0].absolute_fuzzy_equals(plus_z))
2116  plus_z_ids[side_dim].insert(face_ids.begin(), face_ids.end());
2117  }
2118  }
2119  }
2120 
2121  // For a distributed mesh, boundaries may be distributed as well. We therefore collect information
2122  // from everyone. If the mesh is already serial, then there is no need to do an allgather. Note
2123  // that this is just going to gather information about what the periodic bc ids are. We are not
2124  // gathering any remote elements or anything like that. It's just that the GhostPointNeighbors
2125  // ghosting functor currently relies on the fact that every process agrees on whether we have
2126  // periodic boundaries; every process that thinks there are periodic boundaries will call
2127  // MeshBase::sub_point_locator which makes a parallel_object_only() assertion (right or wrong). So
2128  // we all need to go there (or not go there)
2129  if (_use_distributed_mesh && !_mesh->is_serial())
2130  {
2131  // Pack all data together so that we send them via one communication
2132  // pair: boundary side --> boundary ids.
2133  std::vector<std::pair<boundary_id_type, boundary_id_type>> vecdata;
2134  // We check boundaries on all dimensions
2135  for (unsigned side_dim = 0; side_dim < dim; ++side_dim)
2136  {
2137  // "6" means: we have at most 6 boundaries. It is true for generated simple mesh
2138  // "detectPairedSidesets" is designed for only simple meshes
2139  for (auto bd = minus_x_ids[side_dim].begin(); bd != minus_x_ids[side_dim].end(); bd++)
2140  vecdata.emplace_back(side_dim * 6 + 0, *bd);
2141 
2142  for (auto bd = plus_x_ids[side_dim].begin(); bd != plus_x_ids[side_dim].end(); bd++)
2143  vecdata.emplace_back(side_dim * 6 + 1, *bd);
2144 
2145  for (auto bd = minus_y_ids[side_dim].begin(); bd != minus_y_ids[side_dim].end(); bd++)
2146  vecdata.emplace_back(side_dim * 6 + 2, *bd);
2147 
2148  for (auto bd = plus_y_ids[side_dim].begin(); bd != plus_y_ids[side_dim].end(); bd++)
2149  vecdata.emplace_back(side_dim * 6 + 3, *bd);
2150 
2151  for (auto bd = minus_z_ids[side_dim].begin(); bd != minus_z_ids[side_dim].end(); bd++)
2152  vecdata.emplace_back(side_dim * 6 + 4, *bd);
2153 
2154  for (auto bd = plus_z_ids[side_dim].begin(); bd != plus_z_ids[side_dim].end(); bd++)
2155  vecdata.emplace_back(side_dim * 6 + 5, *bd);
2156  }
2157 
2158  _communicator.allgather(vecdata, false);
2159 
2160  // Unpack data, and add them into minus/plus_x/y_ids
2161  for (auto pair = vecdata.begin(); pair != vecdata.end(); pair++)
2162  {
2163  // Convert data from the long vector, and add data to separated sets
2164  auto side_dim = pair->first / 6;
2165  auto side = pair->first % 6;
2166 
2167  switch (side)
2168  {
2169  case 0:
2170  minus_x_ids[side_dim].insert(pair->second);
2171  break;
2172  case 1:
2173  plus_x_ids[side_dim].insert(pair->second);
2174  break;
2175  case 2:
2176  minus_y_ids[side_dim].insert(pair->second);
2177  break;
2178  case 3:
2179  plus_y_ids[side_dim].insert(pair->second);
2180  break;
2181  case 4:
2182  minus_z_ids[side_dim].insert(pair->second);
2183  break;
2184  case 5:
2185  plus_z_ids[side_dim].insert(pair->second);
2186  break;
2187  default:
2188  mooseError("Unknown boundary side ", side);
2189  }
2190  }
2191 
2192  } // end if (_use_distributed_mesh && !_need_ghost_ghosted_boundaries)
2193 
2194  for (unsigned side_dim = 0; side_dim < dim; ++side_dim)
2195  {
2196  // If unique pairings were found, fill up the _paired_boundary data
2197  // structure with that information.
2198  if (minus_x_ids[side_dim].size() == 1 && plus_x_ids[side_dim].size() == 1)
2199  _paired_boundary.emplace_back(
2200  std::make_pair(*(minus_x_ids[side_dim].begin()), *(plus_x_ids[side_dim].begin())));
2201  else
2203  "For side dimension " + std::to_string(side_dim) +
2204  " we did not find paired boundaries (sidesets) in X due to the presence of " +
2205  std::to_string(minus_x_ids[side_dim].size()) + " -X normal and " +
2206  std::to_string(plus_x_ids[side_dim].size()) + " +X normal boundaries.");
2207 
2208  if (minus_y_ids[side_dim].size() == 1 && plus_y_ids[side_dim].size() == 1)
2209  _paired_boundary.emplace_back(
2210  std::make_pair(*(minus_y_ids[side_dim].begin()), *(plus_y_ids[side_dim].begin())));
2211  else
2213  "For side dimension " + std::to_string(side_dim) +
2214  " we did not find paired boundaries (sidesets) in Y due to the presence of " +
2215  std::to_string(minus_y_ids[side_dim].size()) + " -Y normal and " +
2216  std::to_string(plus_y_ids[side_dim].size()) + " +Y normal boundaries.");
2217 
2218  if (minus_z_ids[side_dim].size() == 1 && plus_z_ids[side_dim].size() == 1)
2219  _paired_boundary.emplace_back(
2220  std::make_pair(*(minus_z_ids[side_dim].begin()), *(plus_z_ids[side_dim].begin())));
2221  else
2223  "For side dimension " + std::to_string(side_dim) +
2224  " we did not find paired boundaries (sidesets) in Z due to the presence of " +
2225  std::to_string(minus_z_ids[side_dim].size()) + " -Z normal and " +
2226  std::to_string(plus_z_ids[side_dim].size()) + " +Z normal boundaries.");
2227  }
2228 }
std::unique_ptr< FEGenericBase< Real > > build(const unsigned int dim, const FEType &fet)
void allgather(const T &send_data, std::vector< T, A > &recv_data) const
virtual std::unique_ptr< Elem > build_side_ptr(const unsigned int i)=0
void mooseInfoRepeated(Args &&... args)
Emit an informational message with the given stringified, concatenated args.
Definition: MooseError.h:398
static constexpr std::size_t dim
This is the dimension of all vector and tensor datastructures used in MOOSE.
Definition: Moose.h:159
void boundary_ids(const Node *node, std::vector< boundary_id_type > &vec_to_fill) const
const Parallel::Communicator & _communicator
const BoundaryInfo & get_boundary_info() const
bool _use_distributed_mesh
False by default.
Definition: MooseMesh.h:1454
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
SimpleRange< IndexType > as_range(const std::pair< IndexType, IndexType > &p)
virtual unsigned int n_sides() const=0
const Elem * neighbor_ptr(unsigned int i) const
bool absolute_fuzzy_equals(const T &var1, const T2 &var2, const Real tol=TOLERANCE *TOLERANCE)
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1459
virtual unsigned short dim() const=0
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271
unsigned int mesh_dimension() const
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139
std::vector< std::pair< BoundaryID, BoundaryID > > _paired_boundary
A vector holding the paired boundaries for a regular orthogonal mesh.
Definition: MooseMesh.h:1614

◆ determineUseDistributedMesh()

void MooseMesh::determineUseDistributedMesh ( )

Determine whether to use a distributed mesh.

Should be called during construction

Definition at line 2866 of file MooseMesh.C.

Referenced by MooseMesh(), and setParallelType().

2867 {
2868  switch (_parallel_type)
2869  {
2870  case ParallelType::DEFAULT:
2871  // The user did not specify 'parallel_type = XYZ' in the input file,
2872  // so we allow the --distributed-mesh command line arg to possibly turn
2873  // on DistributedMesh. If the command line arg is not present, we pick ReplicatedMesh.
2875  _use_distributed_mesh = true;
2876  break;
2880  _use_distributed_mesh = false;
2881  break;
2883  _use_distributed_mesh = true;
2884  break;
2885  }
2886 
2887  // If the user specifies 'nemesis = true' in the Mesh block, or they are using --use-split,
2888  // we must use DistributedMesh.
2889  if (_is_nemesis || _is_split)
2890  _use_distributed_mesh = true;
2891 }
ParallelType _parallel_type
Can be set to DISTRIBUTED, REPLICATED, or DEFAULT.
Definition: MooseMesh.h:1449
bool _is_nemesis
True if a Nemesis Mesh was read in.
Definition: MooseMesh.h:1500
bool getDistributedMeshOnCommandLine() const
Returns true if the user specified –distributed-mesh (or –parallel-mesh, for backwards compatibilit...
Definition: MooseApp.h:460
bool _use_distributed_mesh
False by default.
Definition: MooseMesh.h:1454
const bool _is_split
Whether or not we are using a (pre-)split mesh (automatically DistributedMesh)
Definition: MooseMesh.h:1617
MooseApp & _app
The MOOSE application this is associated with.
Definition: MooseBase.h:357
bool _parallel_type_overridden
Definition: MooseMesh.h:1456

◆ dimension()

unsigned int MooseMesh::dimension ( ) const
virtual

◆ dimensionWidth()

Real MooseMesh::dimensionWidth ( unsigned int  component) const

Returns the width of the requested dimension.

Definition at line 2231 of file MooseMesh.C.

Referenced by addPeriodicVariable(), AddPeriodicBCAction::autoTranslationBoundaries(), and effectiveSpatialDimension().

2232 {
2233  return getMaxInDimension(component) - getMinInDimension(component);
2234 }
virtual Real getMaxInDimension(unsigned int component) const
Definition: MooseMesh.C:2246
virtual Real getMinInDimension(unsigned int component) const
Returns the min or max of the requested dimension respectively.
Definition: MooseMesh.C:2237

◆ doingPRefinement() [1/2]

void MooseMesh::doingPRefinement ( bool  doing_p_refinement)
inline

Indicate whether the kind of adaptivity we're doing is p-refinement.

Definition at line 1373 of file MooseMesh.h.

Referenced by SubProblem::doingPRefinement(), Adaptivity::init(), FEProblemBase::init(), ProjectMaterialProperties::onBoundary(), CacheChangedListsThread::onElement(), and ProjectMaterialProperties::onElement().

1373 { _doing_p_refinement = doing_p_refinement; }
bool _doing_p_refinement
Whether we have p-refinement (as opposed to h-refinement)
Definition: MooseMesh.h:1920

◆ doingPRefinement() [2/2]

bool MooseMesh::doingPRefinement ( ) const
inline

Query whether we have p-refinement.

Definition at line 1378 of file MooseMesh.h.

Referenced by buildRefinementAndCoarseningMaps().

1378 { return _doing_p_refinement; }
bool _doing_p_refinement
Whether we have p-refinement (as opposed to h-refinement)
Definition: MooseMesh.h:1920

◆ effectiveSpatialDimension()

unsigned int MooseMesh::effectiveSpatialDimension ( ) const
virtual

Returns the effective spatial dimension determined by the coordinates actually used by the mesh.

This means that a 1D mesh that has non-zero z or y coordinates is actually a 2D or 3D mesh, respectively. Likewise a 2D mesh that has non-zero z coordinates is actually 3D mesh.

Definition at line 2974 of file MooseMesh.C.

2975 {
2976  const Real abs_zero = 1e-12;
2977 
2978  // See if the mesh is completely containd in the z and y planes to calculate effective spatial
2979  // dim
2980  for (unsigned int dim = LIBMESH_DIM; dim >= 1; --dim)
2981  if (dimensionWidth(dim - 1) >= abs_zero)
2982  return dim;
2983 
2984  // If we get here, we have a 1D mesh on the x-axis.
2985  return 1;
2986 }
static constexpr std::size_t dim
This is the dimension of all vector and tensor datastructures used in MOOSE.
Definition: Moose.h:159
DIE A HORRIBLE DEATH HERE typedef LIBMESH_DEFAULT_SCALAR_TYPE Real
Real dimensionWidth(unsigned int component) const
Returns the width of the requested dimension.
Definition: MooseMesh.C:2231

◆ elem() [1/2]

Elem * MooseMesh::elem ( const dof_id_type  i)
virtual

◆ elem() [2/2]

const Elem * MooseMesh::elem ( const dof_id_type  i) const
virtual

Definition at line 3146 of file MooseMesh.C.

3147 {
3148  mooseDeprecated("MooseMesh::elem() is deprecated, please use MooseMesh::elemPtr() instead");
3149  return elemPtr(i);
3150 }
virtual Elem * elemPtr(const dof_id_type i)
Definition: MooseMesh.C:3153
void mooseDeprecated(Args &&... args) const
Definition: MooseBase.h:314

◆ elemInfo()

const ElemInfo & MooseMesh::elemInfo ( const dof_id_type  id) const

Accessor for the elemInfo object for a given element ID.

Definition at line 3911 of file MooseMesh.C.

Referenced by MooseLinearVariableFV< Real >::evaluate(), and MooseLinearVariableFV< Real >::evaluateGradient().

3912 {
3913  return libmesh_map_find(_elem_to_elem_info, id);
3914 }
std::unordered_map< dof_id_type, ElemInfo > _elem_to_elem_info
Map connecting elems with their corresponding ElemInfo, we use the element ID as the key...
Definition: MooseMesh.h:1627

◆ elemInfoVector()

const std::vector<const ElemInfo *>& MooseMesh::elemInfoVector ( ) const
inline

Accessor for the element info objects owned by this process.

Definition at line 1207 of file MooseMesh.h.

1207 { return _elem_info; }
std::vector< const ElemInfo * > _elem_info
Holds only those ElemInfo objects that have processor_id equal to this process&#39;s id, e.g.
Definition: MooseMesh.h:1631

◆ elemPtr() [1/2]

Elem * MooseMesh::elemPtr ( const dof_id_type  i)
virtual

Definition at line 3153 of file MooseMesh.C.

Referenced by FEProblemBase::addGhostedElem(), SystemBase::augmentSendList(), NodalPatchRecoveryAuxBase::blockRestrictElements(), NodalPatchRecovery::compute(), BoundaryMarker::computeElementMarker(), ProjectionAux::computeValue(), NodalPatchRecoveryAuxBase::computeValue(), elem(), ProjectionAux::elemOnNodeVariableIsDefinedOn(), ActivateElementsUserObjectBase::execute(), NonlinearSystemBase::findImplicitGeometricCouplingEntries(), NearestNodeLocator::findNodes(), ElementSubdomainModifierBase::findReinitializedElemsAndNodes(), ElementSubdomainModifierBase::gatherMovingBoundaryChanges(), ElementSubdomainModifierBase::gatherPatchElements(), NodalPatchRecoveryBase::gatherRequestList(), NodalPatchRecoveryBase::getCoefficients(), NodeElemConstraint::getConnectedDofIndices(), NodeFaceConstraint::getConnectedDofIndices(), FEProblemBase::getDiracElements(), PenetrationThread::getInfoForFacesWithCommonNodes(), ActivateElementsUserObjectBase::getNewlyActivatedElementRange(), ActivateElementsUserObjectBase::getNewlyActivatedNodeRange(), DiracKernelBase::hasPointsOnElem(), ActivateElementsUserObjectBase::isNewlyActivated(), Moose::Mortar::loopOverMortarSegments(), ElementSubdomainModifierBase::nodeIsNewlyReinitialized(), SecondaryNeighborhoodThread::operator()(), PenetrationThread::operator()(), FEProblemBase::prepareFace(), FEProblemBase::reinitDirac(), FEProblemBase::reinitElem(), FEProblemBase::reinitElemFaceRef(), FEProblemBase::reinitElemNeighborAndLowerD(), ElementSubdomainModifierBase::reinitializedElemRange(), FEProblemBase::reinitLowerDElem(), FEProblemBase::reinitNeighbor(), FEProblemBase::reinitNeighborFaceRef(), NonlinearSystemBase::reinitNodeFace(), FEProblemBase::setCurrentLowerDElem(), ElementSubdomainModifierBase::storeOverriddenDofValues(), and NearestNodeLocator::updatePatch().

3154 {
3155  return getMesh().elem_ptr(i);
3156 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
virtual const Elem * elem_ptr(const dof_id_type i) const=0

◆ elemPtr() [2/2]

const Elem * MooseMesh::elemPtr ( const dof_id_type  i) const
virtual

Definition at line 3159 of file MooseMesh.C.

3160 {
3161  return getMesh().elem_ptr(i);
3162 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
virtual const Elem * elem_ptr(const dof_id_type i) const=0

◆ elemTypes()

MooseEnum MooseMesh::elemTypes ( )
static

returns MooseMesh element type options

Definition at line 3946 of file MooseMesh.C.

3947 {
3949  "EDGE EDGE2 EDGE3 EDGE4 QUAD QUAD4 QUAD8 QUAD9 TRI3 TRI6 HEX HEX8 HEX20 HEX27 TET4 TET10 "
3950  "PRISM6 PRISM15 PRISM18 PYRAMID5 PYRAMID13 PYRAMID14");
3951  return elemTypes;
3952 }
This is a "smart" enum class intended to replace many of the shortcomings in the C++ enum type It sho...
Definition: MooseEnum.h:33
static MooseEnum elemTypes()
returns MooseMesh element type options
Definition: MooseMesh.C:3946

◆ enabled()

virtual bool MooseObject::enabled ( ) const
inlinevirtualinherited

Return the enabled status of the object.

Reimplemented in EigenKernel.

Definition at line 46 of file MooseObject.h.

Referenced by EigenKernel::enabled().

46 { return _enabled; }
const bool & _enabled
Reference to the "enable" InputParameters, used by Controls for toggling on/off MooseObjects.
Definition: MooseObject.h:80

◆ errorIfDistributedMesh()

void MooseMesh::errorIfDistributedMesh ( std::string  name) const

Generate a unified error message if the underlying libMesh mesh is a DistributedMesh.

Clients of MooseMesh can use this function to throw an error if they know they don't work with DistributedMesh.

See, for example, the NodalVariableValue class.

Definition at line 3657 of file MooseMesh.C.

Referenced by BoundaryPreservedMarker::BoundaryPreservedMarker(), ElementsAlongLine::ElementsAlongLine(), ElementsAlongPlane::ElementsAlongPlane(), FunctorPositions::initialize(), FunctorTimes::initialize(), IntersectionPointsAlongLine::IntersectionPointsAlongLine(), LineMaterialSamplerBase< Real >::LineMaterialSamplerBase(), MultiAppGeometricInterpolationTransfer::MultiAppGeometricInterpolationTransfer(), MultiAppUserObjectTransfer::MultiAppUserObjectTransfer(), NodeElemConstraintBase::NodeElemConstraintBase(), NonlocalIntegratedBC::NonlocalIntegratedBC(), NonlocalKernel::NonlocalKernel(), PatternedMesh::PatternedMesh(), StitchedMesh::StitchedMesh(), and TiledMesh::TiledMesh().

3658 {
3660  mooseError("Cannot use ",
3661  name,
3662  " with DistributedMesh!\n",
3663  "Consider specifying parallel_type = 'replicated' in your input file\n",
3664  "to prevent it from being run with DistributedMesh.");
3665 }
bool _use_distributed_mesh
False by default.
Definition: MooseMesh.h:1454
const std::string & name() const
Get the name of the class.
Definition: MooseBase.h:103
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271

◆ errorPrefix()

std::string MooseBase::errorPrefix ( const std::string &  ) const
inlineinherited

Deprecated message prefix; the error type is no longer used.

Definition at line 264 of file MooseBase.h.

264 { return messagePrefix(); }
std::string messagePrefix(const bool hit_prefix=true) const
Definition: MooseBase.h:256

◆ faceInfo() [1/2]

const std::vector< const FaceInfo * > & MooseMesh::faceInfo ( ) const
inline

Accessor for local FaceInfo objects.

Definition at line 2216 of file MooseMesh.h.

Referenced by LayeredSideDiffusiveFluxAverage::computeQpIntegral(), SideIntegralVariableUserObject::computeQpIntegral(), InterfaceUserObject::execute(), FunctorSmootherTempl< T >::FunctorSmootherTempl(), SideUserObject::getFaceInfos(), and InternalSideUserObject::getFaceInfos().

2217 {
2218  return _face_info;
2219 }
std::vector< const FaceInfo * > _face_info
Holds only those FaceInfo objects that have processor_id equal to this process&#39;s id, e.g.
Definition: MooseMesh.h:1639

◆ faceInfo() [2/2]

const FaceInfo* MooseMesh::faceInfo ( const Elem *  elem,
unsigned int  side 
) const

Accessor for the local FaceInfo object on the side of one element. Returns null if ghosted.

◆ findAdaptivityQpMaps()

void MooseMesh::findAdaptivityQpMaps ( const Elem template_elem,
libMesh::QBase qrule,
libMesh::QBase qrule_face,
std::vector< std::vector< QpMap >> &  refinement_map,
std::vector< std::pair< unsigned int, QpMap >> &  coarsen_map,
int  parent_side,
int  child,
int  child_side 
)
private

Given an elem type, get maps that tell us what qp's are closest to each other between a parent and it's children.

This is mainly used for mapping stateful material properties during adaptivity.

There are 3 cases here:

  1. Volume to volume (parent_side = -1, child = -1, child_side = -1)
  2. Parent side to child side (parent_side = 0+, child = -1, child_side = 0+)
  3. Child side to parent volume (parent_side = -1, child = 0+, child_side = 0+)

Case 3 only happens under refinement (need to invent data at internal child sides).

Parameters
template_elemAn element of the type that we need to find the maps for
qruleThe quadrature rule that we need to find the maps for
qrule_faceThe face quadrature rule that we need to find the maps for
refinement_mapThe map to use when an element gets split
coarsen_mapThe map to use when an element is coarsened.
parent_side- the id of the parent's side
child- the id of the child element
child_side- The id of the child's side

Definition at line 2659 of file MooseMesh.C.

Referenced by buildCoarseningMap(), and buildRefinementMap().

2667 {
2668  TIME_SECTION("findAdaptivityQpMaps", 5);
2669 
2671  mesh.skip_partitioning(true);
2672 
2673  unsigned int dim = template_elem->dim();
2675 
2676  for (unsigned int i = 0; i < template_elem->n_nodes(); ++i)
2677  mesh.add_point(template_elem->point(i));
2678 
2679  Elem * elem = mesh.add_elem(Elem::build(template_elem->type()).release());
2680 
2681  for (unsigned int i = 0; i < template_elem->n_nodes(); ++i)
2682  elem->set_node(i, mesh.node_ptr(i));
2683 
2684  std::unique_ptr<FEBase> fe(FEBase::build(dim, FEType()));
2685  fe->get_phi();
2686  const std::vector<Point> & q_points_volume = fe->get_xyz();
2687 
2688  std::unique_ptr<FEBase> fe_face(FEBase::build(dim, FEType()));
2689  fe_face->get_phi();
2690  const std::vector<Point> & q_points_face = fe_face->get_xyz();
2691 
2692  fe->attach_quadrature_rule(&qrule);
2693  fe_face->attach_quadrature_rule(&qrule_face);
2694 
2695  // The current q_points (locations in *physical* space)
2696  const std::vector<Point> * q_points;
2697 
2698  if (parent_side != -1)
2699  {
2700  fe_face->reinit(elem, parent_side);
2701  q_points = &q_points_face;
2702  }
2703  else
2704  {
2705  fe->reinit(elem);
2706  q_points = &q_points_volume;
2707  }
2708 
2709  std::vector<Point> parent_ref_points;
2710 
2711  libMesh::FEMap::inverse_map(elem->dim(), elem, *q_points, parent_ref_points);
2712  libMesh::MeshRefinement mesh_refinement(mesh);
2713  mesh_refinement.uniformly_refine(1);
2714 
2715  // A map from the child element index to the locations of all the child's quadrature points in
2716  // *reference* space. Note that we use a map here instead of a vector because the caller can
2717  // pass an explicit child index. We are not guaranteed to have a sequence from [0, n_children)
2718  std::map<unsigned int, std::vector<Point>> child_to_ref_points;
2719 
2720  unsigned int n_children = elem->n_children();
2721 
2722  refinement_map.resize(n_children);
2723 
2724  std::vector<unsigned int> children;
2725 
2726  if (child != -1) // Passed in a child explicitly
2727  children.push_back(child);
2728  else
2729  {
2730  children.resize(n_children);
2731  for (unsigned int child = 0; child < n_children; ++child)
2732  children[child] = child;
2733  }
2734 
2735  for (unsigned int i = 0; i < children.size(); ++i)
2736  {
2737  unsigned int child = children[i];
2738 
2739  if ((parent_side != -1 && !elem->is_child_on_side(child, parent_side)))
2740  continue;
2741 
2742  const Elem * child_elem = elem->child_ptr(child);
2743 
2744  if (child_side != -1)
2745  {
2746  fe_face->reinit(child_elem, child_side);
2747  q_points = &q_points_face;
2748  }
2749  else
2750  {
2751  fe->reinit(child_elem);
2752  q_points = &q_points_volume;
2753  }
2754 
2755  std::vector<Point> child_ref_points;
2756 
2757  libMesh::FEMap::inverse_map(elem->dim(), elem, *q_points, child_ref_points);
2758  child_to_ref_points[child] = child_ref_points;
2759 
2760  std::vector<QpMap> & qp_map = refinement_map[child];
2761 
2762  // Find the closest parent_qp to each child_qp
2763  mapPoints(child_ref_points, parent_ref_points, qp_map);
2764  }
2765 
2766  coarsen_map.resize(parent_ref_points.size());
2767 
2768  // For each parent qp find the closest child qp
2769  for (unsigned int child = 0; child < n_children; child++)
2770  {
2771  if (parent_side != -1 && !elem->is_child_on_side(child, child_side))
2772  continue;
2773 
2774  std::vector<Point> & child_ref_points = child_to_ref_points[child];
2775 
2776  std::vector<QpMap> qp_map;
2777 
2778  // Find all of the closest points from parent_qp to _THIS_ child's qp
2779  mapPoints(parent_ref_points, child_ref_points, qp_map);
2780 
2781  // Check those to see if they are closer than what we currently have for each point
2782  for (unsigned int parent_qp = 0; parent_qp < parent_ref_points.size(); ++parent_qp)
2783  {
2784  std::pair<unsigned int, QpMap> & child_and_map = coarsen_map[parent_qp];
2785  unsigned int & closest_child = child_and_map.first;
2786  QpMap & closest_map = child_and_map.second;
2787 
2788  QpMap & current_map = qp_map[parent_qp];
2789 
2790  if (current_map._distance < closest_map._distance)
2791  {
2792  closest_child = child;
2793  closest_map = current_map;
2794  }
2795  }
2796  }
2797 }
std::unique_ptr< FEGenericBase< Real > > build(const unsigned int dim, const FEType &fet)
virtual Node *& set_node(const unsigned int i)
void skip_partitioning(bool skip)
static Point inverse_map(const unsigned int dim, const Elem *elem, const Point &p, const Real tolerance=TOLERANCE, const bool secure=true, const bool extra_checks=true)
virtual bool is_child_on_side(const unsigned int c, const unsigned int s) const=0
MeshBase & mesh
Helper object for holding qp mapping info.
Definition: MooseMesh.h:73
static constexpr std::size_t dim
This is the dimension of all vector and tensor datastructures used in MOOSE.
Definition: Moose.h:159
virtual unsigned int n_children() const=0
const Parallel::Communicator & _communicator
virtual Node * add_point(const Point &p, const dof_id_type id=DofObject::invalid_id, const processor_id_type proc_id=DofObject::invalid_processor_id)=0
void mapPoints(const std::vector< Point > &from, const std::vector< Point > &to, std::vector< QpMap > &qp_map)
Find the closest points that map "from" to "to" and fill up "qp_map".
Definition: MooseMesh.C:2628
virtual unsigned int n_nodes() const=0
virtual Elem * add_elem(Elem *e)=0
void set_mesh_dimension(unsigned char d)
virtual unsigned short dim() const=0
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139
virtual const Node * node_ptr(const dof_id_type i) const=0
virtual ElemType type() const=0
const Point & point(const unsigned int i) const
Real _distance
The distance between them.
Definition: MooseMesh.h:85
const Elem * child_ptr(unsigned int i) const

◆ freeBndElems()

void MooseMesh::freeBndElems ( )
protected

Definition at line 405 of file MooseMesh.C.

Referenced by buildBndElemList(), and ~MooseMesh().

406 {
407  // free memory
408  for (auto & belem : _bnd_elems)
409  delete belem;
410 
411  for (auto & it : _bnd_elem_ids)
412  it.second.clear();
413 
414  _bnd_elem_ids.clear();
415  _bnd_elem_range.reset();
416 }
std::unique_ptr< libMesh::StoredRange< MooseMesh::const_bnd_elem_iterator, const BndElement * > > _bnd_elem_range
Definition: MooseMesh.h:1533
std::unordered_map< boundary_id_type, std::unordered_set< dof_id_type > > _bnd_elem_ids
Map of set of elem IDs connected to each boundary.
Definition: MooseMesh.h:1576
std::vector< BndElement * > _bnd_elems
array of boundary elems
Definition: MooseMesh.h:1571

◆ freeBndNodes()

void MooseMesh::freeBndNodes ( )
protected

Definition at line 386 of file MooseMesh.C.

Referenced by buildNodeList(), and ~MooseMesh().

387 {
388  // free memory
389  for (auto & bnode : _bnd_nodes)
390  delete bnode;
391 
392  for (auto & it : _node_set_nodes)
393  it.second.clear();
394 
395  _node_set_nodes.clear();
396 
397  for (auto & it : _bnd_node_ids)
398  it.second.clear();
399 
400  _bnd_node_ids.clear();
401  _bnd_node_range.reset();
402 }
std::map< boundary_id_type, std::set< dof_id_type > > _bnd_node_ids
Map of sets of node IDs in each boundary.
Definition: MooseMesh.h:1568
std::map< boundary_id_type, std::vector< dof_id_type > > _node_set_nodes
list of nodes that belongs to a specified nodeset: indexing [nodeset_id] -> [array of node ids] ...
Definition: MooseMesh.h:1587
std::vector< BndNode * > _bnd_nodes
array of boundary nodes
Definition: MooseMesh.h:1564
std::unique_ptr< libMesh::StoredRange< MooseMesh::const_bnd_node_iterator, const BndNode * > > _bnd_node_range
Definition: MooseMesh.h:1531

◆ getActiveLocalElementRange()

ConstElemRange * MooseMesh::getActiveLocalElementRange ( )

Return pointers to range objects for various types of ranges (local nodes, boundary elems, etc.).

Definition at line 1276 of file MooseMesh.C.

Referenced by AuxiliarySystem::computeElementalVarsHelper(), FEProblemBase::computeIndicators(), FEProblemBase::computeMarkers(), FEProblemBase::computeUserObjectsInternal(), PointwiseRenormalizeVector::execute(), ElementSubdomainModifierBase::gatherPatchElements(), FEProblemBase::getCurrentAlgebraicElementRange(), FEProblemBase::initialSetup(), meshChanged(), DOFMapOutput::output(), MeshInfo::possiblyAddSubdomainInfo(), FEProblemBase::projectSolution(), SystemBase::setVariableGlobalDoFs(), FixedPointSolve::solve(), TransientMultiApp::solveStep(), ElementSubdomainModifierBase::storeOverriddenDofValues(), updateActiveSemiLocalNodeRange(), Adaptivity::updateErrorVectors(), FEProblemBase::updateMaxQps(), and SystemBase::zeroVariables().

1277 {
1279  {
1280  TIME_SECTION("getActiveLocalElementRange", 5);
1281 
1282  _active_local_elem_range = std::make_unique<ConstElemRange>(
1283  getMesh().active_local_elements_begin(), getMesh().active_local_elements_end(), GRAIN_SIZE);
1284  }
1285 
1286  return _active_local_elem_range.get();
1287 }
std::unique_ptr< libMesh::ConstElemRange > _active_local_elem_range
A range for use with threading.
Definition: MooseMesh.h:1525
static const int GRAIN_SIZE
Definition: MooseMesh.C:67
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488

◆ getActiveNodeRange()

NodeRange * MooseMesh::getActiveNodeRange ( )

Definition at line 1290 of file MooseMesh.C.

Referenced by VariableCondensationPreconditioner::getDofToCondense(), and meshChanged().

1291 {
1292  if (!_active_node_range)
1293  {
1294  TIME_SECTION("getActiveNodeRange", 5);
1295 
1296  _active_node_range = std::make_unique<NodeRange>(
1297  getMesh().active_nodes_begin(), getMesh().active_nodes_end(), GRAIN_SIZE);
1298  }
1299 
1300  return _active_node_range.get();
1301 }
std::unique_ptr< libMesh::NodeRange > _active_node_range
Definition: MooseMesh.h:1528
static const int GRAIN_SIZE
Definition: MooseMesh.C:67
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488

◆ getActiveSemiLocalNodeRange()

SemiLocalNodeRange * MooseMesh::getActiveSemiLocalNodeRange ( ) const

Definition at line 1304 of file MooseMesh.C.

1305 {
1306  mooseAssert(_active_semilocal_node_range,
1307  "_active_semilocal_node_range has not been created yet!");
1308 
1309  return _active_semilocal_node_range.get();
1310 }
std::unique_ptr< SemiLocalNodeRange > _active_semilocal_node_range
Definition: MooseMesh.h:1527

◆ getAllElemIDs()

std::set< dof_id_type > MooseMesh::getAllElemIDs ( unsigned int  elem_id_index) const

Return all the unique element IDs for an extra element integer with its index.

Definition at line 1167 of file MooseMesh.C.

Referenced by getElemIDMapping().

1168 {
1169  std::set<dof_id_type> unique_ids;
1170  for (auto & pair : _block_id_mapping[elem_id_index])
1171  for (auto & id : pair.second)
1172  unique_ids.insert(id);
1173  return unique_ids;
1174 }
std::vector< std::unordered_map< SubdomainID, std::set< dof_id_type > > > _block_id_mapping
Unique element integer IDs for each subdomain and each extra element integers.
Definition: MooseMesh.h:1871

◆ getAxisymmetricRadialCoord()

unsigned int MooseMesh::getAxisymmetricRadialCoord ( ) const

Returns the desired radial direction for RZ coordinate transformation.

Returns
The coordinate direction for the radial direction

Definition at line 4334 of file MooseMesh.C.

Referenced by SubProblem::getAxisymmetricRadialCoord(), and ComputeLinearFVGreenGaussGradientVolumeThread::operator()().

4335 {
4337  mooseError("getAxisymmetricRadialCoord() should not be called if "
4338  "setGeneralAxisymmetricCoordAxes() has been called.");
4339 
4340  if (_rz_coord_axis == 0)
4341  return 1; // if the rotation axis is x (0), then the radial direction is y (1)
4342  else
4343  return 0; // otherwise the radial direction is assumed to be x, i.e., the rotation axis is y
4344 }
bool usingGeneralAxisymmetricCoordAxes() const
Returns true if general axisymmetric coordinate axes are being used.
Definition: MooseMesh.C:4319
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271
unsigned int _rz_coord_axis
Storage for RZ axis selection.
Definition: MooseMesh.h:1904

◆ getBase()

const std::string& MooseBase::getBase ( ) const
inlineinherited
Returns
The registered base for this object (set via InputParameters::registerBase())

Definition at line 147 of file MooseBase.h.

Referenced by Factory::copyConstruct(), and MooseBase::uniqueParameterName().

147 { return _pars.getBase(); }
const InputParameters & _pars
The object&#39;s parameters.
Definition: MooseBase.h:366
const std::string & getBase() const

◆ getBlockConnectedBlocks()

const std::set< SubdomainID > & MooseMesh::getBlockConnectedBlocks ( const SubdomainID  subdomain_id) const

Get the list of subdomains neighboring a given subdomain.

Parameters
subdomain_idThe boundary ID you want to get the subdomain IDs for.
Returns
All subdomain IDs neighboring a given subdomain

Definition at line 3594 of file MooseMesh.C.

3595 {
3596  const auto it = _sub_to_data.find(subdomain_id);
3597 
3598  if (it == _sub_to_data.end())
3599  mooseError("Unable to find subdomain ID: ", subdomain_id, '.');
3600 
3601  return it->second.neighbor_subs;
3602 }
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271
std::unordered_map< SubdomainID, SubdomainData > _sub_to_data
Holds a map from subdomain ids to associated data.
Definition: MooseMesh.h:1831

◆ getBlocksMaxDimension()

unsigned int MooseMesh::getBlocksMaxDimension ( const std::vector< SubdomainName > &  blocks) const

Returns the maximum element dimension on the given blocks.

Definition at line 2989 of file MooseMesh.C.

Referenced by BlockRestrictable::initializeBlockRestrictable().

2990 {
2991  const auto & mesh = getMesh();
2992 
2993  // Take a shortcut if possible
2994  if (const auto & elem_dims = mesh.elem_dimensions(); mesh.is_prepared() && elem_dims.size() == 1)
2995  return *elem_dims.begin();
2996 
2997  unsigned short dim = 0;
2998  const auto subdomain_ids = getSubdomainIDs(blocks);
2999  const std::set<SubdomainID> subdomain_ids_set(subdomain_ids.begin(), subdomain_ids.end());
3000  for (const auto & elem : mesh.active_subdomain_set_elements_ptr_range(subdomain_ids_set))
3001  dim = std::max(dim, elem->dim());
3002 
3003  // Get the maximumal globally
3005  return dim;
3006 }
bool is_prepared() const
char ** blocks
MeshBase & mesh
static constexpr std::size_t dim
This is the dimension of all vector and tensor datastructures used in MOOSE.
Definition: Moose.h:159
const Parallel::Communicator & _communicator
std::vector< SubdomainID > getSubdomainIDs(const std::vector< SubdomainName > &subdomain_names) const
Get the associated subdomainIDs for the subdomain names that are passed in.
Definition: MooseMesh.C:1775
auto max(const L &left, const R &right)
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
const std::set< unsigned char > & elem_dimensions() const
void max(const T &r, T &o, Request &req) const
virtual unsigned short dim() const=0
virtual SimpleRange< element_iterator > active_subdomain_set_elements_ptr_range(std::set< subdomain_id_type > ss)=0
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139

◆ getBoundariesToActiveSemiLocalElemIds()

const std::unordered_map< boundary_id_type, std::unordered_set< dof_id_type > > & MooseMesh::getBoundariesToActiveSemiLocalElemIds ( ) const

Returns a map of boundaries to ids of elements on the boundary.

Definition at line 1363 of file MooseMesh.C.

Referenced by getBoundariesToElems().

1364 {
1365  return _bnd_elem_ids;
1366 }
std::unordered_map< boundary_id_type, std::unordered_set< dof_id_type > > _bnd_elem_ids
Map of set of elem IDs connected to each boundary.
Definition: MooseMesh.h:1576

◆ getBoundariesToElems()

const std::unordered_map< boundary_id_type, std::unordered_set< dof_id_type > > & MooseMesh::getBoundariesToElems ( ) const

Returns a map of boundaries to ids of elements on the boundary.

Definition at line 1355 of file MooseMesh.C.

1356 {
1357  mooseDeprecated("MooseMesh::getBoundariesToElems is deprecated, "
1358  "use MooseMesh::getBoundariesToActiveSemiLocalElemIds");
1360 }
void mooseDeprecated(Args &&... args) const
Definition: MooseBase.h:314
const std::unordered_map< boundary_id_type, std::unordered_set< dof_id_type > > & getBoundariesToActiveSemiLocalElemIds() const
Returns a map of boundaries to ids of elements on the boundary.
Definition: MooseMesh.C:1363

◆ getBoundaryActiveNeighborElemIds()

std::unordered_set< dof_id_type > MooseMesh::getBoundaryActiveNeighborElemIds ( BoundaryID  bid) const

Return all ids of neighbors of elements which have a side which is part of a sideset.

Note that boundaries are sided, this is on the neighbor side. For the sideset side, use getBoundariesActiveLocalElemIds. Note that while the element is local and active, the neighbor is not guaranteed to be local, it could be ghosted. Note that if the neighbor is not ghosted, is a remote_elem, then it will not be included

Parameters
bidthe id of the sideset of interest

Definition at line 1380 of file MooseMesh.C.

1381 {
1382  // Vector of boundary elems is updated every mesh update
1383  std::unordered_set<dof_id_type> neighbor_elems;
1384  for (const auto & bnd_elem : _bnd_elems)
1385  {
1386  const auto & [elem_ptr, elem_side, elem_bid] = *bnd_elem;
1387  if (elem_bid == bid)
1388  {
1389  const auto * neighbor = elem_ptr->neighbor_ptr(elem_side);
1390  // Dont add fully remote elements, ghosted is fine
1391  if (neighbor && neighbor != libMesh::remote_elem)
1392  {
1393  // handle mesh refinement, only return active elements near the boundary
1394  if (neighbor->active())
1395  neighbor_elems.insert(neighbor->id());
1396  else
1397  {
1398  std::vector<const Elem *> family;
1399  neighbor->active_family_tree_by_neighbor(family, elem_ptr);
1400  for (const auto & child_neighbor : family)
1401  neighbor_elems.insert(child_neighbor->id());
1402  }
1403  }
1404  }
1405  }
1406 
1407  return neighbor_elems;
1408 }
std::vector< BndElement * > _bnd_elems
array of boundary elems
Definition: MooseMesh.h:1571
const RemoteElem * remote_elem

◆ getBoundaryActiveSemiLocalElemIds()

std::unordered_set< dof_id_type > MooseMesh::getBoundaryActiveSemiLocalElemIds ( BoundaryID  bid) const

Return all ids of elements which have a side which is part of a sideset.

Note that boundaries are sided.

Parameters
bidthe id of the sideset of interest

Definition at line 1369 of file MooseMesh.C.

1370 {
1371  // The boundary to element map is computed on every mesh update
1372  const auto it = _bnd_elem_ids.find(bid);
1373  if (it == _bnd_elem_ids.end())
1374  // Boundary is not local to this domain, return an empty set
1375  return std::unordered_set<dof_id_type>{};
1376  return it->second;
1377 }
std::unordered_map< boundary_id_type, std::unordered_set< dof_id_type > > _bnd_elem_ids
Map of set of elem IDs connected to each boundary.
Definition: MooseMesh.h:1576

◆ getBoundaryConnectedBlocks()

std::set< SubdomainID > MooseMesh::getBoundaryConnectedBlocks ( const BoundaryID  bid) const

Get the list of subdomains associated with the given boundary.

Parameters
bidThe boundary ID you want to get the subdomain IDs for.
Returns
All subdomain IDs associated with given boundary ID

Definition at line 3561 of file MooseMesh.C.

Referenced by DomainUserObject::DomainUserObject(), getInterfaceConnectedBlocks(), and NodeFaceConstraint::getSecondaryConnectedBlocks().

3562 {
3563  std::set<SubdomainID> subdomain_ids;
3564  for (const auto & [sub_id, data] : _sub_to_data)
3565  if (data.boundary_ids.find(bid) != data.boundary_ids.end())
3566  subdomain_ids.insert(sub_id);
3567 
3568  return subdomain_ids;
3569 }
std::unordered_map< SubdomainID, SubdomainData > _sub_to_data
Holds a map from subdomain ids to associated data.
Definition: MooseMesh.h:1831

◆ getBoundaryConnectedSecondaryBlocks()

std::set< SubdomainID > MooseMesh::getBoundaryConnectedSecondaryBlocks ( const BoundaryID  bid) const

Get the list of subdomains associated with the given boundary of its secondary side.

Parameters
bidThe boundary ID you want to get the subdomain IDs for.
Returns
All subdomain IDs associated with given boundary ID

Definition at line 3572 of file MooseMesh.C.

Referenced by DomainUserObject::DomainUserObject().

3573 {
3574  std::set<SubdomainID> subdomain_ids;
3575  for (const auto & it : _neighbor_subdomain_boundary_ids)
3576  if (it.second.find(bid) != it.second.end())
3577  subdomain_ids.insert(it.first);
3578 
3579  return subdomain_ids;
3580 }
std::unordered_map< SubdomainID, std::set< BoundaryID > > _neighbor_subdomain_boundary_ids
Holds a map from neighbor subomdain ids to the boundary ids that are attached to it.
Definition: MooseMesh.h:1834

◆ getBoundaryElementRange()

ConstBndElemRange * MooseMesh::getBoundaryElementRange ( )

Definition at line 1341 of file MooseMesh.C.

Referenced by AuxiliarySystem::computeElementalVarsHelper(), DMMooseGetEmbedding_Private(), GeometricSearchData::generateQuadratureNodes(), FEProblemBase::initialSetup(), meshChanged(), and GeometricSearchData::updateQuadratureNodes().

1342 {
1343  if (!_bnd_elem_range)
1344  {
1345  TIME_SECTION("getBoundaryElementRange", 5);
1346 
1347  _bnd_elem_range =
1348  std::make_unique<ConstBndElemRange>(bndElemsBegin(), bndElemsEnd(), GRAIN_SIZE);
1349  }
1350 
1351  return _bnd_elem_range.get();
1352 }
virtual bnd_elem_iterator bndElemsEnd()
Definition: MooseMesh.C:1607
std::unique_ptr< libMesh::StoredRange< MooseMesh::const_bnd_elem_iterator, const BndElement * > > _bnd_elem_range
Definition: MooseMesh.h:1533
virtual bnd_elem_iterator bndElemsBegin()
Return iterators to the beginning/end of the boundary elements list.
Definition: MooseMesh.C:1599
static const int GRAIN_SIZE
Definition: MooseMesh.C:67

◆ getBoundaryID()

BoundaryID MooseMesh::getBoundaryID ( const BoundaryName &  boundary_name) const

Get the associated BoundaryID for the boundary name.

Returns
param boundary_name The name of the boundary.
the boundary id from the passed boundary name.

Definition at line 1730 of file MooseMesh.C.

Referenced by AddPeriodicBCAction::act(), TiledMesh::buildMesh(), StitchedMesh::buildMesh(), PatternedMesh::buildMesh(), DMSetUp_Moose_Pre(), GeometricSearchData::getNearestNodeLocator(), GeometricSearchData::getPenetrationLocator(), GeometricSearchData::getQuadratureNearestNodeLocator(), GeometricSearchData::getQuadraturePenetrationLocator(), LinearNodalConstraint::LinearNodalConstraint(), LowerBoundNodalKernel::LowerBoundNodalKernel(), NodalScalarKernel::NodalScalarKernel(), prepare(), EqualValueBoundaryConstraint::updateConstrainedNodes(), and UpperBoundNodalKernel::UpperBoundNodalKernel().

1731 {
1732  if (boundary_name == "ANY_BOUNDARY_ID")
1733  mooseError("Please use getBoundaryIDs() when passing \"ANY_BOUNDARY_ID\"");
1734 
1735  return MooseMeshUtils::getBoundaryID(boundary_name, getMesh());
1736 }
BoundaryID getBoundaryID(const BoundaryName &boundary_name, const MeshBase &mesh)
Gets the boundary ID associated with the given BoundaryName.
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271

◆ getBoundaryIDs() [1/3]

std::vector<BoundaryID> MooseMesh::getBoundaryIDs ( const Elem *const  elem,
const unsigned short int  side 
) const

◆ getBoundaryIDs() [2/3]

const std::set< BoundaryID > & MooseMesh::getBoundaryIDs ( ) const

Returns a const reference to a set of all user-specified boundary IDs.

On a distributed mesh this will only include boundary IDs which exist on local or ghosted elements; a copy and a call to _communicator.set_union() will be necessary to get the global ID set.

Definition at line 3017 of file MooseMesh.C.

Referenced by cacheInfo().

3018 {
3020 }
const BoundaryInfo & get_boundary_info() const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
const std::set< boundary_id_type > & get_boundary_ids() const

◆ getBoundaryIDs() [3/3]

std::vector< BoundaryID > MooseMesh::getBoundaryIDs ( const std::vector< BoundaryName > &  boundary_name,
bool  generate_unknown = false 
) const

Get the associated BoundaryID for the boundary names that are passed in.

Returns
param boundary_name The names of the boundaries.
the boundary ids from the passed boundary names.

Definition at line 1761 of file MooseMesh.C.

1763 {
1765  getMesh(), boundary_name, generate_unknown, _mesh_boundary_ids);
1766 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
std::vector< BoundaryID > getBoundaryIDs(const libMesh::MeshBase &mesh, const std::vector< BoundaryName > &boundary_name, bool generate_unknown, const std::set< BoundaryID > &mesh_boundary_ids)
Gets the boundary IDs with their names.
std::set< BoundaryID > _mesh_boundary_ids
A set of boundary IDs currently present in the mesh.
Definition: MooseMesh.h:1555

◆ getBoundaryName()

const std::string & MooseMesh::getBoundaryName ( BoundaryID  boundary_id)

Return the name of the boundary given the id.

Definition at line 1830 of file MooseMesh.C.

Referenced by addPeriodicVariable(), FEProblemBase::initialSetup(), and NonlinearThread::printBoundaryExecutionInformation().

1831 {
1832  BoundaryInfo & boundary_info = getMesh().get_boundary_info();
1833 
1834  // We need to figure out if this boundary is a sideset or nodeset
1835  if (boundary_info.get_side_boundary_ids().count(boundary_id))
1836  return boundary_info.get_sideset_name(boundary_id);
1837  else
1838  return boundary_info.get_nodeset_name(boundary_id);
1839 }
const std::set< boundary_id_type > & get_side_boundary_ids() const
const BoundaryInfo & get_boundary_info() const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
const std::string & get_nodeset_name(boundary_id_type id) const
const std::string & get_sideset_name(boundary_id_type id) const

◆ getBoundaryNodeRange()

ConstBndNodeRange * MooseMesh::getBoundaryNodeRange ( )

Definition at line 1327 of file MooseMesh.C.

Referenced by AuxiliarySystem::computeMortarNodalVars(), AuxiliarySystem::computeNodalVarsHelper(), DMMooseGetEmbedding_Private(), NearestNodeLocator::findNodes(), FEProblemBase::getCurrentAlgebraicBndNodeRange(), ActivateElementsUserObjectBase::getNewlyActivatedBndNodeRange(), FEProblemBase::initialSetup(), meshChanged(), FEProblemBase::projectSolution(), ElementSubdomainModifierBase::reinitializedBndNodeRange(), and NearestNodeLocator::updatePatch().

1328 {
1329  if (!_bnd_node_range)
1330  {
1331  TIME_SECTION("getBoundaryNodeRange", 5);
1332 
1333  _bnd_node_range =
1334  std::make_unique<ConstBndNodeRange>(bndNodesBegin(), bndNodesEnd(), GRAIN_SIZE);
1335  }
1336 
1337  return _bnd_node_range.get();
1338 }
virtual bnd_node_iterator bndNodesEnd()
Definition: MooseMesh.C:1591
virtual bnd_node_iterator bndNodesBegin()
Return iterators to the beginning/end of the boundary nodes list.
Definition: MooseMesh.C:1583
static const int GRAIN_SIZE
Definition: MooseMesh.C:67
std::unique_ptr< libMesh::StoredRange< MooseMesh::const_bnd_node_iterator, const BndNode * > > _bnd_node_range
Definition: MooseMesh.h:1531

◆ getCheckedPointerParam()

template<typename T >
T MooseBase::getCheckedPointerParam ( const std::string &  name,
const std::string &  error_string = "" 
) const
inherited

Verifies that the requested parameter exists and is not NULL and returns it to the caller.

The template parameter must be a pointer or an error will be thrown.

Definition at line 432 of file MooseBase.h.

433 {
434  return _pars.getCheckedPointerParam<T>(name, error_string);
435 }
const InputParameters & _pars
The object&#39;s parameters.
Definition: MooseBase.h:366
T getCheckedPointerParam(const std::string &name, const std::string &error_string="") const
Verifies that the requested parameter exists and is not NULL and returns it to the caller...
const std::string & name() const
Get the name of the class.
Definition: MooseBase.h:103

◆ getCoarseningMap()

const std::vector< std::pair< unsigned int, QpMap > > & MooseMesh::getCoarseningMap ( const Elem elem,
int  input_side 
)

Get the coarsening map for a given element type.

This will tell you what quadrature points to copy from and to for stateful material properties on newly created elements from Adaptivity.

Parameters
elemThe element that represents the element type you need the coarsening map for.
input_sideThe side to map

Definition at line 2617 of file MooseMesh.C.

Referenced by ProjectMaterialProperties::onBoundary(), and ProjectMaterialProperties::onElement().

2618 {
2619  std::pair<int, ElemType> the_pair(input_side, elem.type());
2620 
2621  if (_elem_type_to_coarsening_map.find(the_pair) == _elem_type_to_coarsening_map.end())
2622  mooseError("Could not find a suitable qp refinement map!");
2623 
2624  return _elem_type_to_coarsening_map[the_pair];
2625 }
std::map< std::pair< int, libMesh::ElemType >, std::vector< std::pair< unsigned int, QpMap > > > _elem_type_to_coarsening_map
Holds mappings for volume to volume and parent side to child side Map key:
Definition: MooseMesh.h:1810
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139
virtual ElemType type() const=0

◆ getConstructNodeListFromSideList()

bool MooseMesh::getConstructNodeListFromSideList ( )
inline

Return construct node list from side list boolean.

Definition at line 1435 of file MooseMesh.h.

Referenced by SidesetAroundSubdomainUpdater::SidesetAroundSubdomainUpdater().

bool _construct_node_list_from_side_list
Whether or not to allow generation of nodesets from sidesets.
Definition: MooseMesh.h:1853

◆ getCoordSystem() [1/2]

Moose::CoordinateSystemType MooseMesh::getCoordSystem ( SubdomainID  sid) const

Get the coordinate system type, e.g.

xyz, rz, or r-spherical, for the provided subdomain id sid

Definition at line 4215 of file MooseMesh.C.

Referenced by SubProblem::getCoordSystem(), and ComputeLinearFVGreenGaussGradientVolumeThread::operator()().

4216 {
4217  auto it = _coord_sys.find(sid);
4218  if (it != _coord_sys.end())
4219  return (*it).second;
4220  else
4221  mooseError("Requested subdomain ", sid, " does not exist.");
4222 }
std::map< SubdomainID, Moose::CoordinateSystemType > & _coord_sys
Type of coordinate system per subdomain.
Definition: MooseMesh.h:1901
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271

◆ getCoordSystem() [2/2]

const std::map< SubdomainID, Moose::CoordinateSystemType > & MooseMesh::getCoordSystem ( ) const

Get the map from subdomain ID to coordinate system type, e.g.

xyz, rz, or r-spherical

Definition at line 4247 of file MooseMesh.C.

Referenced by setGeneralAxisymmetricCoordAxes().

4248 {
4249  return _coord_sys;
4250 }
std::map< SubdomainID, Moose::CoordinateSystemType > & _coord_sys
Type of coordinate system per subdomain.
Definition: MooseMesh.h:1901

◆ getDataFileName()

std::string DataFileInterface::getDataFileName ( const std::string &  param) const
inherited

Deprecated method.

The data file paths are now automatically set within the InputParameters object, so using getParam<DataFileName>("param_name") is now sufficient.

Definition at line 21 of file DataFileInterface.C.

22 {
23  _parent.mooseDeprecated("getDataFileName() is deprecated. The file path is now directly set "
24  "within the InputParameters.\nUse getParam<DataFileName>(\"",
25  param,
26  "\") instead.");
27  return _parent.getParam<DataFileName>(param);
28 }
const T & getParam(const std::string &name) const
Retrieve a parameter for the object.
Definition: MooseBase.h:388
void mooseDeprecated(Args &&... args) const
Definition: MooseBase.h:314
const ParallelParamObject & _parent

◆ getDataFileNameByName()

std::string DataFileInterface::getDataFileNameByName ( const std::string &  relative_path) const
inherited

Deprecated method.

Use getDataFilePath() instead.

Definition at line 31 of file DataFileInterface.C.

32 {
33  _parent.mooseDeprecated("getDataFileNameByName() is deprecated. Use getDataFilePath(\"",
34  relative_path,
35  "\") instead.");
36  return getDataFilePath(relative_path);
37 }
std::string getDataFilePath(const std::string &relative_path) const
Returns the path of a data file for a given relative file path.
void mooseDeprecated(Args &&... args) const
Definition: MooseBase.h:314
const ParallelParamObject & _parent

◆ getDataFilePath()

std::string DataFileInterface::getDataFilePath ( const std::string &  relative_path) const
inherited

Returns the path of a data file for a given relative file path.

This can be used for hardcoded datafile names and will search the same locations as getDataFileName

Definition at line 40 of file DataFileInterface.C.

Referenced by DataFileInterface::getDataFileNameByName().

41 {
42  // This should only ever be used with relative paths. There is no point to
43  // use this search path with an absolute path.
44  if (std::filesystem::path(relative_path).is_absolute())
45  _parent.mooseWarning("While using getDataFilePath(\"",
46  relative_path,
47  "\"): This API should not be used for absolute paths.");
48 
49  // This will search the data paths for this relative path
50  std::optional<std::string> error;
51  Moose::DataFileUtils::Path found_path;
52  {
53  // Throw on error so that if getPath() fails, we can throw an error
54  // with the context of _parent.mooseError()
55  Moose::ScopedThrowOnError scoped_throw_on_error;
56 
57  try
58  {
59  found_path = Moose::DataFileUtils::getPath(relative_path);
60  }
61  catch (std::exception & e)
62  {
63  error = e.what();
64  }
65  }
66 
67  if (error)
68  _parent.mooseError(*error);
69 
70  mooseAssert(found_path.context == Moose::DataFileUtils::Context::DATA,
71  "Should only ever obtain data");
72  mooseAssert(found_path.data_name, "Should be set");
73 
74  const std::string msg =
75  "Using data file '" + found_path.path + "' from " + *found_path.data_name + " data";
76  _parent.mooseInfo(msg);
77 
78  return found_path.path;
79 }
void mooseInfo(Args &&... args) const
Definition: MooseBase.h:321
Context context
Context for the file (where it came from)
Definition: DataFileUtils.h:48
Representation of a data file path.
Definition: DataFileUtils.h:36
Path getPath(std::string path, const std::optional< std::string > &base=std::optional< std::string >())
Get the data path for a given path, searching the registered data.
Definition: DataFileUtils.C:22
std::optional< std::string > data_name
The name of the data registry the file came from (with context == DATA)
Definition: DataFileUtils.h:50
Scoped helper for setting Moose::_throw_on_error during this scope.
Definition: Moose.h:294
void mooseWarning(Args &&... args) const
Emits a warning prefixed with object name and type.
Definition: MooseBase.h:299
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271
const ParallelParamObject & _parent

◆ getElementIDIndex()

unsigned int MooseMesh::getElementIDIndex ( const std::string &  id_name) const
inline

Return the accessing integer for an extra element integer with its name.

Definition at line 2200 of file MooseMesh.h.

Referenced by areElemIDsIdentical().

2201 {
2202  if (!hasElementID(id_name))
2203  mooseError("Mesh does not have element ID for ", id_name);
2204  return getMesh().get_elem_integer_index(id_name);
2205 }
bool hasElementID(const std::string &id_name) const
Whether mesh has an extra element integer with a given name.
Definition: MooseMesh.h:2194
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271

◆ getElemIDMapping()

std::unordered_map< dof_id_type, std::set< dof_id_type > > MooseMesh::getElemIDMapping ( const std::string &  from_id_name,
const std::string &  to_id_name 
) const

Definition at line 1138 of file MooseMesh.C.

1139 {
1140  auto & mesh_base = getMesh();
1141 
1142  if (!mesh_base.has_elem_integer(from_id_name))
1143  mooseError("Mesh does not have the element integer name '", from_id_name, "'");
1144  if (!mesh_base.has_elem_integer(to_id_name))
1145  mooseError("Mesh does not have the element integer name '", to_id_name, "'");
1146 
1147  const auto id1 = mesh_base.get_elem_integer_index(from_id_name);
1148  const auto id2 = mesh_base.get_elem_integer_index(to_id_name);
1149 
1150  std::unordered_map<dof_id_type, std::set<dof_id_type>> id_map;
1151  for (const auto id : getAllElemIDs(id1))
1152  id_map[id] = std::set<dof_id_type>();
1153 
1154  for (const auto & elem : mesh_base.active_local_element_ptr_range())
1155  id_map[elem->get_extra_integer(id1)].insert(elem->get_extra_integer(id2));
1156 
1157  for (auto & [id, ids] : id_map)
1158  {
1159  libmesh_ignore(id); // avoid overzealous gcc 9.4 unused var warning
1160  comm().set_union(ids);
1161  }
1162 
1163  return id_map;
1164 }
const Parallel::Communicator & comm() const
void libmesh_ignore(const Args &...)
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
std::set< dof_id_type > getAllElemIDs(unsigned int elem_id_index) const
Return all the unique element IDs for an extra element integer with its index.
Definition: MooseMesh.C:1167
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139
dof_id_type get_extra_integer(const unsigned int index) const
void set_union(T &data, const unsigned int root_id) const

◆ getElemIDsOnBlocks()

std::set< dof_id_type > MooseMesh::getElemIDsOnBlocks ( unsigned int  elem_id_index,
const std::set< SubdomainID > &  blks 
) const

Return all the unique element IDs for an extra element integer with its index on a set of subdomains.

Definition at line 1177 of file MooseMesh.C.

1178 {
1179  std::set<dof_id_type> unique_ids;
1180  for (auto & blk : blks)
1181  {
1182  auto it = _block_id_mapping[elem_id_index].find(blk);
1183  if (it == _block_id_mapping[elem_id_index].end())
1184  mooseError("Block ", blk, " is not available on the mesh");
1185 
1186  for (auto & mid : it->second)
1187  unique_ids.insert(mid);
1188  }
1189  return unique_ids;
1190 }
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271
std::vector< std::unordered_map< SubdomainID, std::set< dof_id_type > > > _block_id_mapping
Unique element integer IDs for each subdomain and each extra element integers.
Definition: MooseMesh.h:1871

◆ getFileName()

virtual std::string MooseMesh::getFileName ( ) const
inlinevirtual

Returns the name of the mesh file read to produce this mesh if any or an empty string otherwise.

Reimplemented in FileMesh, and TiledMesh.

Definition at line 1082 of file MooseMesh.h.

1082 { return ""; }

◆ getGeneralAxisymmetricCoordAxis()

const std::pair< Point, RealVectorValue > & MooseMesh::getGeneralAxisymmetricCoordAxis ( SubdomainID  subdomain_id) const

Gets the general axisymmetric coordinate axis for a block.

Parameters
[in]subdomain_idSubdomain ID for which to get axisymmetric coordinate axis

Definition at line 4309 of file MooseMesh.C.

4310 {
4311  auto it = _subdomain_id_to_rz_coord_axis.find(subdomain_id);
4312  if (it != _subdomain_id_to_rz_coord_axis.end())
4313  return (*it).second;
4314  else
4315  mooseError("Requested subdomain ", subdomain_id, " does not exist.");
4316 }
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271
std::unordered_map< SubdomainID, std::pair< Point, RealVectorValue > > _subdomain_id_to_rz_coord_axis
Map of subdomain ID to general axisymmetric axis.
Definition: MooseMesh.h:1907

◆ getGhostedBoundaries()

const std::set< unsigned int > & MooseMesh::getGhostedBoundaries ( ) const

Return a writable reference to the set of ghosted boundary IDs.

Definition at line 3281 of file MooseMesh.C.

3282 {
3283  return _ghosted_boundaries;
3284 }
std::set< unsigned int > _ghosted_boundaries
Definition: MooseMesh.h:1589

◆ getGhostedBoundaryInflation()

const std::vector< Real > & MooseMesh::getGhostedBoundaryInflation ( ) const

Return a writable reference to the _ghosted_boundaries_inflation vector.

Definition at line 3287 of file MooseMesh.C.

Referenced by NearestNodeLocator::findNodes(), and NearestNodeLocator::updatePatch().

3288 {
3290 }
std::vector< Real > _ghosted_boundaries_inflation
Definition: MooseMesh.h:1590

◆ getGhostingPatchSize()

unsigned int MooseMesh::getGhostingPatchSize ( ) const
inline

Getter for the ghosting_patch_size parameter.

Definition at line 630 of file MooseMesh.h.

Referenced by NearestNodeLocator::findNodes(), and NearestNodeLocator::updatePatch().

630 { return _ghosting_patch_size; }
unsigned int _ghosting_patch_size
The number of nearest neighbors to consider for ghosting purposes when iteration patch update strateg...
Definition: MooseMesh.h:1596

◆ getHigherDSide()

unsigned int MooseMesh::getHigherDSide ( const Elem elem) const

Returns the local side ID of the interior parent aligned with the lower dimensional element.

Definition at line 1750 of file MooseMesh.C.

1751 {
1752  auto it = _lower_d_elem_to_higher_d_elem_side.find(elem);
1753 
1754  if (it != _lower_d_elem_to_higher_d_elem_side.end())
1755  return it->second;
1756  else
1757  return libMesh::invalid_uint;
1758 }
const unsigned int invalid_uint
std::unordered_map< const Elem *, unsigned short int > _lower_d_elem_to_higher_d_elem_side
Definition: MooseMesh.h:1843
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139

◆ getHitNode()

const hit::Node* MooseBase::getHitNode ( ) const
inlineinherited
Returns
The block-level hit node for this object, if any

Definition at line 136 of file MooseBase.h.

Referenced by FEProblemBase::addAnyRedistributers(), MooseBase::callMooseError(), MooseBase::getHitNode(), and MooseBase::messagePrefix().

136 { return getHitNode(_pars); }
const InputParameters & _pars
The object&#39;s parameters.
Definition: MooseBase.h:366
const hit::Node * getHitNode() const
Definition: MooseBase.h:136

◆ getInflatedProcessorBoundingBox()

BoundingBox MooseMesh::getInflatedProcessorBoundingBox ( Real  inflation_multiplier = 0.01) const

Get a (slightly inflated) processor bounding box.

Parameters
inflation_multiplierThis amount will be multiplied by the length of the diagonal of the bounding box to find the amount to inflate the bounding box by in all directions.

Definition at line 3459 of file MooseMesh.C.

Referenced by PositionsFunctorValueSampler::execute(), PointVariableSamplerBase::execute(), CartesianGridDivision::initialize(), and RadialAverage::updateCommunicationLists().

3460 {
3461  // Grab a bounding box to speed things up. Note that
3462  // local_bounding_box is *not* equivalent to processor_bounding_box
3463  // with processor_id() except in serial.
3465 
3466  // Inflate the bbox just a bit to deal with roundoff
3467  // Adding 1% of the diagonal size in each direction on each end
3468  Real inflation_amount = inflation_multiplier * (bbox.max() - bbox.min()).norm();
3469  Point inflation(inflation_amount, inflation_amount, inflation_amount);
3470 
3471  bbox.first -= inflation; // min
3472  bbox.second += inflation; // max
3473 
3474  return bbox;
3475 }
libMesh::BoundingBox create_local_bounding_box(const MeshBase &mesh)
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
const Point & min() const
auto norm(const T &a) -> decltype(std::abs(a))
DIE A HORRIBLE DEATH HERE typedef LIBMESH_DEFAULT_SCALAR_TYPE Real
const Point & max() const

◆ getInterfaceConnectedBlocks()

std::set< SubdomainID > MooseMesh::getInterfaceConnectedBlocks ( const BoundaryID  bid) const

Get the list of subdomains contacting the given boundary.

Parameters
bidThe boundary ID you want to get the subdomain IDs for.
Returns
All subdomain IDs contacting given boundary ID

Definition at line 3583 of file MooseMesh.C.

3584 {
3585  std::set<SubdomainID> subdomain_ids = getBoundaryConnectedBlocks(bid);
3586  for (const auto & it : _neighbor_subdomain_boundary_ids)
3587  if (it.second.find(bid) != it.second.end())
3588  subdomain_ids.insert(it.first);
3589 
3590  return subdomain_ids;
3591 }
std::unordered_map< SubdomainID, std::set< BoundaryID > > _neighbor_subdomain_boundary_ids
Holds a map from neighbor subomdain ids to the boundary ids that are attached to it.
Definition: MooseMesh.h:1834
std::set< SubdomainID > getBoundaryConnectedBlocks(const BoundaryID bid) const
Get the list of subdomains associated with the given boundary.
Definition: MooseMesh.C:3561

◆ getKokkosMesh()

const Moose::Kokkos::Mesh* MooseMesh::getKokkosMesh ( ) const
inline

Accessor for Kokkos mesh object.

Definition at line 674 of file MooseMesh.h.

Referenced by BlockRestrictable::initializeBlockRestrictable().

674 { return _kokkos_mesh.get(); }
std::unique_ptr< Moose::Kokkos::Mesh > _kokkos_mesh
Pointer to Kokkos mesh object.
Definition: MooseMesh.h:1463

◆ getLocalNodeRange()

ConstNodeRange * MooseMesh::getLocalNodeRange ( )

Definition at line 1313 of file MooseMesh.C.

Referenced by AuxiliarySystem::computeNodalVarsHelper(), FEProblemBase::computeUserObjectsInternal(), FEProblemBase::getCurrentAlgebraicNodeRange(), FEProblemBase::initialSetup(), and meshChanged().

1314 {
1315  if (!_local_node_range)
1316  {
1317  TIME_SECTION("getLocalNodeRange", 5);
1318 
1319  _local_node_range = std::make_unique<ConstNodeRange>(
1320  getMesh().local_nodes_begin(), getMesh().local_nodes_end(), GRAIN_SIZE);
1321  }
1322 
1323  return _local_node_range.get();
1324 }
static const int GRAIN_SIZE
Definition: MooseMesh.C:67
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
std::unique_ptr< libMesh::ConstNodeRange > _local_node_range
Definition: MooseMesh.h:1529

◆ getLowerDElem()

const Elem * MooseMesh::getLowerDElem ( const Elem ,
unsigned short  int 
) const

Returns a const pointer to a lower dimensional element that corresponds to a side of a higher dimensional element.

This relationship is established through an internal_parent; if there is no lowerDElem, nullptr is returned.

Definition at line 1739 of file MooseMesh.C.

Referenced by GhostLowerDElems::operator()(), DisplacedProblem::reinitElemNeighborAndLowerD(), and FEProblemBase::reinitElemNeighborAndLowerD().

1740 {
1741  auto it = _higher_d_elem_side_to_lower_d_elem.find(std::make_pair(elem, side));
1742 
1743  if (it != _higher_d_elem_side_to_lower_d_elem.end())
1744  return it->second;
1745  else
1746  return nullptr;
1747 }
std::unordered_map< std::pair< const Elem *, unsigned short int >, const Elem * > _higher_d_elem_side_to_lower_d_elem
Holds a map from a high-order element side to its corresponding lower-d element.
Definition: MooseMesh.h:1842
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139

◆ getLowerDElemMap()

const std::unordered_map< std::pair< const Elem *, unsigned short int >, const Elem * > & MooseMesh::getLowerDElemMap ( ) const
inline

This function attempts to return the map from a high-order element side to its corresponding lower-d element.

Definition at line 2234 of file MooseMesh.h.

2235 {
2237 }
std::unordered_map< std::pair< const Elem *, unsigned short int >, const Elem * > _higher_d_elem_side_to_lower_d_elem
Holds a map from a high-order element side to its corresponding lower-d element.
Definition: MooseMesh.h:1842

◆ getMaxInDimension()

Real MooseMesh::getMaxInDimension ( unsigned int  component) const
virtual

Reimplemented in AnnularMesh, and GeneratedMesh.

Definition at line 2246 of file MooseMesh.C.

Referenced by dimensionWidth(), GeneratedMesh::getMaxInDimension(), AnnularMesh::getMaxInDimension(), and PropertyReadFile::PropertyReadFile().

2247 {
2248  mooseAssert(_mesh, "The MeshBase has not been constructed");
2249  mooseAssert(component < _bounds.size(), "Requested dimension out of bounds");
2250 
2251  return _bounds[component][MAX];
2252 }
std::vector< std::vector< Real > > _bounds
The bounds in each dimension of the mesh for regular orthogonal meshes.
Definition: MooseMesh.h:1611
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1459

◆ getMaxLeafSize()

unsigned int MooseMesh::getMaxLeafSize ( ) const
inline

Getter for the maximum leaf size parameter.

Definition at line 635 of file MooseMesh.h.

Referenced by NearestNodeLocator::findNodes(), and NearestNodeLocator::updatePatch().

635 { return _max_leaf_size; }
unsigned int _max_leaf_size
Definition: MooseMesh.h:1599

◆ getMaxNodesPerElem()

unsigned int MooseMesh::getMaxNodesPerElem ( ) const
inline

Get the maximum number of nodes per element.

Definition at line 1162 of file MooseMesh.h.

1162 { return _max_nodes_per_elem; }
unsigned int _max_nodes_per_elem
The maximum number of nodes per element.
Definition: MooseMesh.h:1883

◆ getMaxNodesPerSide()

unsigned int MooseMesh::getMaxNodesPerSide ( ) const
inline

Get the maximum number of nodes per side.

Definition at line 1167 of file MooseMesh.h.

1167 { return _max_nodes_per_side; }
unsigned int _max_nodes_per_side
The maximum number of nodes per side.
Definition: MooseMesh.h:1886

◆ getMaxSidesPerElem()

unsigned int MooseMesh::getMaxSidesPerElem ( ) const
inline

Get the maximum number of sides per element.

Definition at line 1157 of file MooseMesh.h.

1157 { return _max_sides_per_elem; }
unsigned int _max_sides_per_elem
The maximum number of sides per element.
Definition: MooseMesh.h:1880

◆ getMesh() [1/4]

MeshBase & MooseMesh::getMesh ( )

Accessor for the underlying libMesh Mesh object.

Definition at line 3488 of file MooseMesh.C.

Referenced by CopyMeshPartitioner::_do_partition(), AddPeriodicBCAction::act(), activeLocalElementsBegin(), activeLocalElementsEnd(), Adaptivity::adaptMesh(), FEProblemBase::addAnyRedistributers(), addQuadratureNode(), addUniqueNode(), MultiAppConservativeTransfer::adjustTransferredSolution(), MultiAppConservativeTransfer::adjustTransferredSolutionNearestPoint(), NonlinearSystemBase::assembleScalingVector(), Assembly::Assembly(), AuxKernelTempl< Real >::AuxKernelTempl(), buildActiveSideList(), buildBndElemList(), MFEMMesh::buildDummyMooseMesh(), buildElemIDInfo(), buildFiniteVolumeInfo(), buildHRefinementAndCoarseningMaps(), buildLowerDMesh(), TiledMesh::buildMesh(), FileMesh::buildMesh(), AnnularMesh::buildMesh(), RinglebMesh::buildMesh(), SpiralAnnularMesh::buildMesh(), ConcentricCircleMesh::buildMesh(), GeneratedMesh::buildMesh(), StitchedMesh::buildMesh(), PatternedMesh::buildMesh(), ImageMesh::buildMesh2D(), ImageMesh::buildMesh3D(), buildNodeList(), buildNodeListFromSideList(), buildPeriodicNodeMap(), buildPeriodicNodeSets(), buildPRefinementAndCoarseningMaps(), buildSideList(), cacheChangedLists(), MultiAppVariableValueSamplePostprocessorTransfer::cacheElemToPostprocessorData(), cacheInfo(), changeBoundaryId(), checkCoordinateSystems(), computeMaxPerElemAndSide(), NonlinearSystemBase::constraintJacobians(), NonlinearSystemBase::constraintResiduals(), PenetrationThread::createInfoForElem(), MortarData::createMortarInterface(), detectOrthogonalDimRanges(), detectPairedSidesets(), dimension(), ExtraElementIntegerDivision::divisionIndex(), FunctorBinnedValuesDivision::divisionIndex(), SubdomainsDivision::divisionIndex(), DumpObjectsProblem::dumpVariableHelper(), ElementalVariableValue::ElementalVariableValue(), ElementGroupCentroidPositions::ElementGroupCentroidPositions(), ElementMaterialSampler::ElementMaterialSampler(), elemPtr(), ElemSideNeighborLayersTester::execute(), NodalNormalsCorner::execute(), MultiAppVariableValueSamplePostprocessorTransfer::execute(), MultiAppUserObjectTransfer::execute(), NodalNormalsPreprocessor::execute(), ExtraElementIntegerDivision::ExtraElementIntegerDivision(), ExtraIDIntegralVectorPostprocessor::ExtraIDIntegralVectorPostprocessor(), QuadraturePointMultiApp::fillPositions(), CentroidMultiApp::fillPositions(), MultiAppGeometricInterpolationTransfer::fillSourceInterpolationPoints(), SidesetAroundSubdomainUpdater::finalize(), ActivateElementsUserObjectBase::finalize(), ElementSubdomainModifierBase::gatherMovingBoundaryChanges(), ElementSubdomainModifierBase::gatherMovingBoundaryChangesHelper(), getActiveLocalElementRange(), getActiveNodeRange(), getBlocksMaxDimension(), getBoundaryID(), getBoundaryIDs(), getBoundaryName(), getElementIDIndex(), getElemIDMapping(), FEProblemBase::getEvaluableElementRange(), getInflatedProcessorBoundingBox(), getLocalNodeRange(), SubProblem::getMaterialPropertyBlockNames(), SubProblem::getMaterialPropertyBoundaryNames(), getNodeList(), FEProblemBase::getNonlinearEvaluableElementRange(), getPointLocator(), getSubdomainID(), getSubdomainIDs(), getSubdomainName(), ghostGhostedBoundaries(), Exodus::handleExodusIOMeshRenumbering(), hasElementID(), init(), DisplacedProblem::UpdateDisplacedMeshThread::init(), VerifyElementUniqueID::initialize(), VerifyNodalUniqueID::initialize(), ExtraElementIntegerDivision::initialize(), ElementCentroidPositions::initialize(), ElementGroupCentroidPositions::initialize(), FunctorPositions::initialize(), FunctorTimes::initialize(), NodePositions::initialize(), QuadraturePointsPositions::initialize(), FunctorExtremaPositions::initialize(), ParsedDownSelectionPositions::initialize(), MultiAppDofCopyTransfer::initialSetup(), NodalVariableValue::initialSetup(), FEProblemBase::initialSetup(), SampledOutput::initSample(), MultiAppGeometricInterpolationTransfer::interpolateTargetPoints(), LinearNodalConstraint::LinearNodalConstraint(), localNodesBegin(), localNodesEnd(), Moose::Mortar::loopOverMortarSegments(), maxElemId(), maxNodeId(), GhostingUserObject::meshChanged(), RadialAverage::meshChanged(), DisplacedProblem::meshChanged(), FEProblemBase::meshChanged(), MooseMesh(), NearestNodeLocator::nearestNode(), nElem(), nNodes(), NodalPatchRecovery::NodalPatchRecovery(), NodalVariableValue::NodalVariableValue(), nodeToActiveSemilocalElemMap(), nodeToElemMap(), ComputeNodalUserObjectsThread::onNode(), ProxyRelationshipManager::operator()(), MortarUserObjectThread::operator()(), PenetrationThread::operator()(), ComputeMortarFunctor::operator()(), XDA::output(), Exodus::outputEmptyTimestep(), Exodus::outputNodalVariables(), prepare(), BoundaryPreservedMarker::preserveBoundary(), printInfo(), queryElemPtr(), queryNodePtr(), FileMesh::read(), PropertyReadFile::readData(), RedistributeProperties::redistribute(), SubProblem::restrictionBoundaryCheckName(), SubProblem::restrictionSubdomainCheckName(), setBoundaryName(), NonlinearSystemBase::setConstraintSecondaryValues(), XFEMInterface::setDisplacedMesh(), ActivateElementsUserObjectBase::setNewBoundayName(), setPartitionerHelper(), setSubdomainName(), SidesetAroundSubdomainUpdater::SidesetAroundSubdomainUpdater(), sideWithBoundaryID(), MoveNodesToGeometryModifierBase::snapNodes(), MultiAppDofCopyTransfer::transfer(), DisplacedProblem::undisplaceMesh(), update(), updateActiveSemiLocalNodeRange(), EqualValueBoundaryConstraint::updateConstrainedNodes(), Adaptivity::updateErrorVectors(), RandomData::updateGenerators(), DisplacedProblem::updateMesh(), SampledOutput::updateSample(), and VariableCondensationPreconditioner::VariableCondensationPreconditioner().

3489 {
3490  mooseAssert(_mesh, "Mesh hasn't been created");
3491  return *_mesh;
3492 }
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1459

◆ getMesh() [2/4]

MeshBase& MooseMesh::getMesh ( const std::string &  name)

◆ getMesh() [3/4]

const MeshBase & MooseMesh::getMesh ( ) const

Definition at line 3495 of file MooseMesh.C.

3496 {
3497  mooseAssert(_mesh, "Mesh hasn't been created");
3498  return *_mesh;
3499 }
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1459

◆ getMesh() [4/4]

const MeshBase& MooseMesh::getMesh ( const std::string &  name) const

◆ getMeshPtr()

const MeshBase * MooseMesh::getMeshPtr ( ) const

Definition at line 3482 of file MooseMesh.C.

Referenced by buildTypedMesh(), RelationshipManager::init(), and GhostBoundary::operator()().

3483 {
3484  return _mesh.get();
3485 }
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1459

◆ getMinInDimension()

Real MooseMesh::getMinInDimension ( unsigned int  component) const
virtual

Returns the min or max of the requested dimension respectively.

Reimplemented in AnnularMesh, and GeneratedMesh.

Definition at line 2237 of file MooseMesh.C.

Referenced by dimensionWidth(), GeneratedMesh::getMinInDimension(), AnnularMesh::getMinInDimension(), and PropertyReadFile::PropertyReadFile().

2238 {
2239  mooseAssert(_mesh, "The MeshBase has not been constructed");
2240  mooseAssert(component < _bounds.size(), "Requested dimension out of bounds");
2241 
2242  return _bounds[component][MIN];
2243 }
std::vector< std::vector< Real > > _bounds
The bounds in each dimension of the mesh for regular orthogonal meshes.
Definition: MooseMesh.h:1611
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1459

◆ getMooseApp()

MooseApp& MooseBase::getMooseApp ( ) const
inlineinherited

Get the MooseApp this class is associated with.

Definition at line 87 of file MooseBase.h.

Referenced by ChainControlSetupAction::act(), AddDefaultConvergenceAction::addDefaultMultiAppFixedPointConvergence(), AddDefaultConvergenceAction::addDefaultNonlinearConvergence(), AddDefaultConvergenceAction::addDefaultSteadyStateConvergence(), FEProblemBase::advanceState(), ParsedChainControl::buildFunction(), ReporterTransferInterface::checkHasReporterValue(), AddDefaultConvergenceAction::checkUnusedMultiAppFixedPointConvergenceParameters(), AddDefaultConvergenceAction::checkUnusedNonlinearConvergenceParameters(), AddDefaultConvergenceAction::checkUnusedSteadyStateConvergenceParameters(), Coupleable::checkWritableVar(), ComponentPhysicsInterface::ComponentPhysicsInterface(), Coupleable::Coupleable(), MortarData::createMortarInterface(), EigenProblem::doFreeNonlinearPowerIterations(), Terminator::execute(), FEProblemSolve::FEProblemSolve(), SolutionInvalidInterface::flagInvalidSolutionInternal(), ChainControl::getChainControlDataSystem(), DefaultConvergenceBase::getSharedExecutionerParam(), ChainControlDataPostprocessor::initialSetup(), MooseVariableDataFV< OutputType >::MooseVariableDataFV(), ProgressOutput::output(), PetscOutputInterface::petscLinearOutput(), PetscOutputInterface::petscNonlinearOutput(), PetscOutputInterface::PetscOutputInterface(), PostprocessorInterface::postprocessorsAdded(), MultiApp::preTransfer(), Reporter::Reporter(), ReporterInterface::reportersAdded(), MultiApp::restore(), and VectorPostprocessorInterface::vectorPostprocessorsAdded().

87 { return _app; }
MooseApp & _app
The MOOSE application this is associated with.
Definition: MooseBase.h:357

◆ getNodeBlockIds()

const std::set< SubdomainID > & MooseMesh::getNodeBlockIds ( const Node node) const

Return list of blocks to which the given node belongs.

Definition at line 1537 of file MooseMesh.C.

Referenced by ComputeNodalUserObjectsThread::onNode(), ComputeNodalKernelsThread::onNode(), ComputeNodalKernelJacobiansThread::onNode(), ComputeInitialConditionThread::operator()(), and MoveNodesToGeometryModifierBase::snapNodes().

1538 {
1539  auto it = _block_node_list.find(node.id());
1540 
1541  if (it == _block_node_list.end())
1542  mooseError("Unable to find node: ", node.id(), " in any block list.");
1543 
1544  return it->second;
1545 }
std::map< dof_id_type, std::set< SubdomainID > > _block_node_list
list of nodes that belongs to a specified block (domain)
Definition: MooseMesh.h:1584
dof_id_type id() const
virtual const Node & node(const dof_id_type i) const
Various accessors (pointers/references) for Node "i".
Definition: MooseMesh.C:835
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271

◆ getNodeList()

const std::vector< dof_id_type > & MooseMesh::getNodeList ( boundary_id_type  nodeset_id) const

Return a writable reference to a vector of node IDs that belong to nodeset_id.

Definition at line 3510 of file MooseMesh.C.

Referenced by LinearNodalConstraint::LinearNodalConstraint(), NodalScalarKernel::NodalScalarKernel(), MoveNodesToGeometryModifierBase::snapNodes(), and EqualValueBoundaryConstraint::updateConstrainedNodes().

3511 {
3512  std::map<boundary_id_type, std::vector<dof_id_type>>::const_iterator it =
3513  _node_set_nodes.find(nodeset_id);
3514 
3515  if (it == _node_set_nodes.end())
3516  {
3517  // On a distributed mesh we might not know about a remote nodeset,
3518  // so we'll return an empty vector and hope the nodeset exists
3519  // elsewhere.
3520  if (!getMesh().is_serial())
3521  {
3522  static const std::vector<dof_id_type> empty_vec;
3523  return empty_vec;
3524  }
3525  // On a replicated mesh we should know about every nodeset and if
3526  // we're asked for one that doesn't exist then it must be a bug.
3527  else
3528  {
3529  mooseError("Unable to nodeset ID: ", nodeset_id, '.');
3530  }
3531  }
3532 
3533  return it->second;
3534 }
std::map< boundary_id_type, std::vector< dof_id_type > > _node_set_nodes
list of nodes that belongs to a specified nodeset: indexing [nodeset_id] -> [array of node ids] ...
Definition: MooseMesh.h:1587
virtual bool is_serial() const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271

◆ getNormalByBoundaryID()

const RealVectorValue & MooseMesh::getNormalByBoundaryID ( BoundaryID  id) const

Returns the normal vector associated with a given BoundaryID.

It's only valid to call this when AddAllSideSetsByNormals is active.

Definition at line 2850 of file MooseMesh.C.

2851 {
2852  mooseAssert(_boundary_to_normal_map.get() != nullptr, "Boundary To Normal Map not built!");
2853 
2854  // Note: Boundaries that are not in the map (existing boundaries) will default
2855  // construct a new RealVectorValue - (x,y,z)=(0, 0, 0)
2856  return (*_boundary_to_normal_map)[id];
2857 }
std::unique_ptr< std::map< BoundaryID, RealVectorValue > > _boundary_to_normal_map
The boundary to normal map - valid only when AddAllSideSetsByNormals is active.
Definition: MooseMesh.h:1561

◆ getPairedBoundaryMapping()

const std::pair< BoundaryID, BoundaryID > * MooseMesh::getPairedBoundaryMapping ( unsigned int  component)

This function attempts to return the paired boundary ids for the given component.

For example, in a generated 2D mesh, passing 0 for the "x" component will return (3, 1).

Parameters
component- An integer representing the desired component (dimension)
Returns
std::pair pointer - The matching boundary pairs for the passed component

Definition at line 2331 of file MooseMesh.C.

Referenced by addPeriodicVariable(), and AddPeriodicBCAction::autoTranslationBoundaries().

2332 {
2334  mooseError("Trying to retrieve automatic paired mapping for a mesh that is not regular and "
2335  "orthogonal");
2336 
2337  mooseAssert(component < dimension(), "Requested dimension out of bounds");
2338 
2339  if (_paired_boundary.empty())
2341 
2342  if (component < _paired_boundary.size())
2343  return &_paired_boundary[component];
2344  else
2345  return nullptr;
2346 }
void detectPairedSidesets()
This routine detects paired sidesets of a regular orthogonal mesh (.i.e.
Definition: MooseMesh.C:2037
virtual unsigned int dimension() const
Returns MeshBase::mesh_dimension(), (not MeshBase::spatial_dimension()!) of the underlying libMesh me...
Definition: MooseMesh.C:2968
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271
std::vector< std::pair< BoundaryID, BoundaryID > > _paired_boundary
A vector holding the paired boundaries for a regular orthogonal mesh.
Definition: MooseMesh.h:1614
bool _regular_orthogonal_mesh
Boolean indicating whether this mesh was detected to be regular and orthogonal.
Definition: MooseMesh.h:1608

◆ getParallelType()

ParallelType MooseMesh::getParallelType ( ) const
inline
Returns
The parallel type

Definition at line 1027 of file MooseMesh.h.

Referenced by MultiAppDofCopyTransfer::initialSetup().

1027 { return _parallel_type; }
ParallelType _parallel_type
Can be set to DISTRIBUTED, REPLICATED, or DEFAULT.
Definition: MooseMesh.h:1449

◆ getParam() [1/2]

template<typename T >
const T & MooseBase::getParam ( const std::string &  name) const
inherited

Retrieve a parameter for the object.

Parameters
nameThe name of the parameter
Returns
The value of the parameter

Definition at line 388 of file MooseBase.h.

Referenced by CreateDisplacedProblemAction::act(), AddPeriodicBCAction::act(), CommonOutputAction::act(), FEProblemBase::addOutput(), DiffusionPhysicsBase::addPostprocessors(), ADNodalKernel::ADNodalKernel(), ArrayParsedAux::ArrayParsedAux(), AddPeriodicBCAction::autoTranslationBoundaries(), BicubicSplineFunction::BicubicSplineFunction(), Boundary2DDelaunayGenerator::Boundary2DDelaunayGenerator(), ComponentPhysicsInterface::ComponentPhysicsInterface(), FunctorAux::computeValue(), Console::Console(), FEProblemBase::createTagSolutions(), CutMeshByLevelSetGenerator::CutMeshByLevelSetGenerator(), DebugResidualAux::DebugResidualAux(), AccumulateReporter::declareLateValues(), DerivativeParsedMaterialTempl< is_ad >::DerivativeParsedMaterialTempl(), DynamicObjectRegistrationAction::DynamicObjectRegistrationAction(), EigenKernel::EigenKernel(), ElementGroupCentroidPositions::ElementGroupCentroidPositions(), FEProblemSolve::FEProblemSolve(), FiniteDifferencePreconditioner::FiniteDifferencePreconditioner(), ParsedSubdomainGeneratorBase::functionInitialize(), FVInterfaceKernel::FVInterfaceKernel(), BoundaryLayerSubdomainGenerator::generate(), ExtraNodesetGenerator::generate(), FileMeshGenerator::generate(), BlockDeletionGenerator::generate(), BreakMeshByBlockGenerator::generate(), CoarsenBlockGenerator::generate(), GeneratedMeshGenerator::generate(), RefineBlockGenerator::generate(), RefineSidesetGenerator::generate(), MeshExtruderGenerator::generate(), GenericConstantRankTwoTensorTempl< is_ad >::GenericConstantRankTwoTensorTempl(), GenericConstantSymmetricRankTwoTensorTempl< is_ad >::GenericConstantSymmetricRankTwoTensorTempl(), GeometricSearchInterface::GeometricSearchInterface(), MooseApp::getCheckpointDirectories(), DataFileInterface::getDataFileName(), ExecutorInterface::getExecutor(), GhostingUserObject::GhostingUserObject(), FixedPointIterationAdaptiveDT::init(), TimeSequenceStepper::init(), IterationAdaptiveDT::init(), AdvancedOutput::init(), AttribThread::initFrom(), AttribSysNum::initFrom(), AttribResidualObject::initFrom(), AttribDisplaced::initFrom(), BlockRestrictable::initializeBlockRestrictable(), BoundaryRestrictable::initializeBoundaryRestrictable(), Console::initialSetup(), SampledOutput::initSample(), IterationAdaptiveDT::limitDTToPostprocessorValue(), MooseMesh(), MooseStaticCondensationPreconditioner::MooseStaticCondensationPreconditioner(), MooseVariableBase::MooseVariableBase(), MultiSystemSolveObject::MultiSystemSolveObject(), NEML2ModelExecutor::NEML2ModelExecutor(), NestedDivision::NestedDivision(), PerfGraphOutput::output(), Console::outputSystemInformation(), ParsedCurveGenerator::ParsedCurveGenerator(), ParsedElementDeletionGenerator::ParsedElementDeletionGenerator(), ParsedGenerateNodeset::ParsedGenerateNodeset(), ParsedGenerateSideset::ParsedGenerateSideset(), ParsedMaterialTempl< is_ad >::ParsedMaterialTempl(), ParsedNodeTransformGenerator::ParsedNodeTransformGenerator(), ParsedODEKernel::ParsedODEKernel(), ParsedPostprocessor::ParsedPostprocessor(), PiecewiseByBlockFunctorMaterialTempl< T >::PiecewiseByBlockFunctorMaterialTempl(), PiecewiseConstantByBlockMaterialTempl< is_ad >::PiecewiseConstantByBlockMaterialTempl(), ReferenceResidualInterface::ReferenceResidualInterface(), RenameBlockGenerator::RenameBlockGenerator(), Moose::FV::setInterpolationMethod(), SetupMeshAction::setupMesh(), Output::setWallTimeIntervalFromCommandLineParam(), SingleMatrixPreconditioner::SingleMatrixPreconditioner(), TimePeriod::TimePeriod(), UniqueExtraIDMeshGenerator::UniqueExtraIDMeshGenerator(), FunctorIC::value(), VariableCondensationPreconditioner::VariableCondensationPreconditioner(), and VectorOfPostprocessors::VectorOfPostprocessors().

389 {
390  return InputParameters::getParamHelper<T>(name, _pars);
391 }
const InputParameters & _pars
The object&#39;s parameters.
Definition: MooseBase.h:366
const std::string & name() const
Get the name of the class.
Definition: MooseBase.h:103

◆ getParam() [2/2]

template<typename T1 , typename T2 >
std::vector< std::pair< T1, T2 > > MooseBase::getParam ( const std::string &  param1,
const std::string &  param2 
) const
inherited

Retrieve two parameters and provide pair of parameters for the object.

Parameters
param1The name of first parameter
param2The name of second parameter
Returns
Vector of pairs of first and second parameters

Definition at line 425 of file MooseBase.h.

426 {
427  return _pars.get<T1, T2>(param1, param2);
428 }
const InputParameters & _pars
The object&#39;s parameters.
Definition: MooseBase.h:366
std::vector< std::pair< R1, R2 > > get(const std::string &param1, const std::string &param2) const
Combine two vector parameters into a single vector of pairs.

◆ getPatchSize()

unsigned int MooseMesh::getPatchSize ( ) const

Getter for the patch_size parameter.

Definition at line 3441 of file MooseMesh.C.

Referenced by NearestNodeLocator::findNodes(), and NearestNodeLocator::updatePatch().

3442 {
3443  return _patch_size;
3444 }
unsigned int _patch_size
The number of nodes to consider in the NearestNode neighborhood.
Definition: MooseMesh.h:1593

◆ getPatchUpdateStrategy()

const Moose::PatchUpdateType & MooseMesh::getPatchUpdateStrategy ( ) const

Get the current patch update strategy.

Definition at line 3453 of file MooseMesh.C.

Referenced by FEProblemBase::possiblyRebuildGeomSearchPatches().

3454 {
3455  return _patch_update_strategy;
3456 }
Moose::PatchUpdateType _patch_update_strategy
The patch update strategy.
Definition: MooseMesh.h:1602

◆ getPCoarseningMap()

const std::vector< QpMap > & MooseMesh::getPCoarseningMap ( const Elem elem) const

Get the map describing for each volumetric quadrature point (qp) on the coarse level which qp on the previous finer level the coarse qp is closest to.

Definition at line 4430 of file MooseMesh.C.

Referenced by ProjectMaterialProperties::onElement().

4431 {
4433 }
const std::vector< QpMap > & getPCoarseningMapHelper(const Elem &elem, const std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap >> &) const
Definition: MooseMesh.C:4408
std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap > > _elem_type_to_p_coarsening_map
Definition: MooseMesh.h:1813
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139

◆ getPCoarseningMapHelper()

const std::vector< QpMap > & MooseMesh::getPCoarseningMapHelper ( const Elem elem,
const std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap >> &   
) const
private

Definition at line 4408 of file MooseMesh.C.

Referenced by getPCoarseningMap(), and getPCoarseningSideMap().

4411 {
4412  mooseAssert(elem.active() && elem.p_refinement_flag() == Elem::JUST_COARSENED,
4413  "These are the conditions that should be met for requesting a coarsening map");
4414  return libmesh_map_find(map, std::make_pair(elem.type(), elem.p_level()));
4415 }
RefinementState p_refinement_flag() const
unsigned int p_level() const
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139
bool active() const
virtual ElemType type() const=0

◆ getPCoarseningSideMap()

const std::vector< QpMap > & MooseMesh::getPCoarseningSideMap ( const Elem elem) const

Get the map describing for each side quadrature point (qp) on the coarse level which qp on the previous finer level the coarse qp is closest to.

Definition at line 4436 of file MooseMesh.C.

Referenced by ProjectMaterialProperties::onBoundary().

4437 {
4439 }
const std::vector< QpMap > & getPCoarseningMapHelper(const Elem &elem, const std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap >> &) const
Definition: MooseMesh.C:4408
std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap > > _elem_type_to_p_coarsening_side_map
Definition: MooseMesh.h:1815
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139

◆ getPointLocator()

std::unique_ptr< libMesh::PointLocatorBase > MooseMesh::getPointLocator ( ) const
virtual

Proxy function to get a (sub)PointLocator from either the underlying libMesh mesh (default), or to allow derived meshes to return a custom point locator.

Definition at line 3773 of file MooseMesh.C.

Referenced by CopyMeshPartitioner::_do_partition(), PenetrationLocator::detectPenetration(), PointValue::execute(), MultiAppVariableValueSampleTransfer::execute(), IntersectionPointsAlongLine::execute(), MultiAppVariableValueSamplePostprocessorTransfer::execute(), ElementsAlongLine::execute(), FindValueOnLine::initialize(), PointSamplerBase::initialize(), PiecewiseConstantFromCSV::initialSetup(), ReporterPointMarker::markerSetup(), and PenetrationThread::operator()().

3774 {
3775  return getMesh().sub_point_locator();
3776 }
std::unique_ptr< PointLocatorBase > sub_point_locator() const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488

◆ getPRefinementMap()

const std::vector< QpMap > & MooseMesh::getPRefinementMap ( const Elem elem) const

Get the map describing for each volumetric quadrature point (qp) on the refined level which qp on the previous coarser level the fine qp is closest to.

Definition at line 4418 of file MooseMesh.C.

Referenced by ProjectMaterialProperties::onElement().

4419 {
4421 }
const std::vector< QpMap > & getPRefinementMapHelper(const Elem &elem, const std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap >> &) const
Definition: MooseMesh.C:4397
std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap > > _elem_type_to_p_refinement_map
Definition: MooseMesh.h:1787
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139

◆ getPRefinementMapHelper()

const std::vector< QpMap > & MooseMesh::getPRefinementMapHelper ( const Elem elem,
const std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap >> &   
) const
private

Definition at line 4397 of file MooseMesh.C.

Referenced by getPRefinementMap(), and getPRefinementSideMap().

4400 {
4401  // We are actually seeking the map stored with the p_level - 1 key, e.g. the refinement map that
4402  // maps from the previous p_level to this element's p_level
4403  return libmesh_map_find(map,
4404  std::make_pair(elem.type(), cast_int<unsigned int>(elem.p_level() - 1)));
4405 }
unsigned int p_level() const
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139
virtual ElemType type() const=0

◆ getPRefinementSideMap()

const std::vector< QpMap > & MooseMesh::getPRefinementSideMap ( const Elem elem) const

Get the map describing for each side quadrature point (qp) on the refined level which qp on the previous coarser level the fine qp is closest to.

Definition at line 4424 of file MooseMesh.C.

Referenced by ProjectMaterialProperties::onBoundary().

4425 {
4427 }
const std::vector< QpMap > & getPRefinementMapHelper(const Elem &elem, const std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap >> &) const
Definition: MooseMesh.C:4397
std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap > > _elem_type_to_p_refinement_side_map
Definition: MooseMesh.h:1789
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139

◆ getQuadratureNode()

Node * MooseMesh::getQuadratureNode ( const Elem elem,
const unsigned short int  side,
const unsigned int  qp 
)

Get a specified quadrature node.

Parameters
elemThe element the quadrature point is on
sideThe side the quadrature point is on
qpThe quadrature point number associated with the point

Definition at line 1700 of file MooseMesh.C.

Referenced by GapValueAux::computeValue(), NearestNodeDistanceAux::computeValue(), PenetrationAux::computeValue(), and GeometricSearchData::updateQuadratureNodes().

1703 {
1704  mooseAssert(_elem_to_side_to_qp_to_quadrature_nodes.find(elem->id()) !=
1706  "Elem has no quadrature nodes!");
1707  mooseAssert(_elem_to_side_to_qp_to_quadrature_nodes[elem->id()].find(side) !=
1709  "Side has no quadrature nodes!");
1710  mooseAssert(_elem_to_side_to_qp_to_quadrature_nodes[elem->id()][side].find(qp) !=
1712  "qp not found on side!");
1713 
1714  return _elem_to_side_to_qp_to_quadrature_nodes[elem->id()][side][qp];
1715 }
dof_id_type id() const
std::map< dof_id_type, std::map< unsigned int, std::map< dof_id_type, Node * > > > _elem_to_side_to_qp_to_quadrature_nodes
Definition: MooseMesh.h:1580
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139

◆ getRefinementMap()

const std::vector< std::vector< QpMap > > & MooseMesh::getRefinementMap ( const Elem elem,
int  parent_side,
int  child,
int  child_side 
)

Get the refinement map for a given element type.

This will tell you what quadrature points to copy from and to for stateful material properties on newly created elements from Adaptivity.

Parameters
elemThe element that represents the element type you need the refinement map for.
parent_sideThe side of the parent to map (-1 if not mapping parent sides)
childThe child number (-1 if not mapping child internal sides)
child_sideThe side number of the child (-1 if not mapping sides)

TODO: When running with parallel mesh + stateful adaptivty we will need to make sure that each processor has a complete map. This may require parallel communication. This is likely to happen when running on a mixed element mesh.

Definition at line 2553 of file MooseMesh.C.

Referenced by ProjectMaterialProperties::onBoundary(), ProjectMaterialProperties::onElement(), and ProjectMaterialProperties::onInternalSide().

2554 {
2555  if (child == -1) // Doing volume mapping or parent side mapping
2556  {
2557  mooseAssert(parent_side == child_side,
2558  "Parent side must match child_side if not passing a specific child!");
2559 
2560  std::pair<int, ElemType> the_pair(parent_side, elem.type());
2561 
2562  if (_elem_type_to_refinement_map.find(the_pair) == _elem_type_to_refinement_map.end())
2563  mooseError("Could not find a suitable qp refinement map!");
2564 
2565  return _elem_type_to_refinement_map[the_pair];
2566  }
2567  else // Need to map a child side to parent volume qps
2568  {
2569  std::pair<int, int> child_pair(child, child_side);
2570 
2573  _elem_type_to_child_side_refinement_map[elem.type()].find(child_pair) ==
2575  mooseError("Could not find a suitable qp refinement map!");
2576 
2577  return _elem_type_to_child_side_refinement_map[elem.type()][child_pair];
2578  }
2579 
2586 }
std::map< libMesh::ElemType, std::map< std::pair< int, int >, std::vector< std::vector< QpMap > > > > _elem_type_to_child_side_refinement_map
Holds mappings for "internal" child sides to parent volume. The second key is (child, child_side).
Definition: MooseMesh.h:1793
std::map< std::pair< int, libMesh::ElemType >, std::vector< std::vector< QpMap > > > _elem_type_to_refinement_map
Holds mappings for volume to volume and parent side to child side Map key:
Definition: MooseMesh.h:1784
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139
virtual ElemType type() const=0

◆ getRenamedParam()

template<typename T >
const T & MooseBase::getRenamedParam ( const std::string &  old_name,
const std::string &  new_name 
) const
inherited

Retrieve a renamed parameter for the object.

This helper makes sure we check both names before erroring, and that only one parameter is passed to avoid silent errors

Parameters
old_namethe old name for the parameter
new_namethe new name for the parameter

Definition at line 402 of file MooseBase.h.

403 {
404  // Most important: accept new parameter
405  if (isParamSetByUser(new_name) && !isParamValid(old_name))
406  return getParam<T>(new_name);
407  // Second most: accept old parameter
408  if (isParamValid(old_name) && !isParamSetByUser(new_name))
409  return getParam<T>(old_name);
410  // Third most: accept default for new parameter
411  if (isParamValid(new_name) && !isParamValid(old_name))
412  return getParam<T>(new_name);
413  // Refuse: no default, no value passed
414  if (!isParamValid(old_name) && !isParamValid(new_name))
415  mooseError("parameter '" + new_name +
416  "' is being retrieved without being set.\nDid you misspell it?");
417  // Refuse: both old and new parameters set by user
418  else
419  mooseError("Parameter '" + new_name + "' may not be provided alongside former parameter '" +
420  old_name + "'");
421 }
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271
bool isParamValid(const std::string &name) const
Test if the supplied parameter is valid.
Definition: MooseBase.h:199
bool isParamSetByUser(const std::string &name) const
Test if the supplied parameter is set by a user, as opposed to not set or set to default.
Definition: MooseBase.h:205

◆ getRestartableData()

template<typename T , typename... Args>
const T & Restartable::getRestartableData ( const std::string &  data_name) const
protectedinherited

Declare a piece of data as "restartable" and initialize it Similar to declareRestartableData but returns a const reference to the object.

Forwarded arguments are not allowed in this case because we assume that the object is restarted and we won't need different constructors to initialize it.

NOTE: This returns a const reference! Make sure you store it in a const reference!

Parameters
data_nameThe name of the data (usually just use the same name as the member variable)

Definition at line 294 of file Restartable.h.

295 {
296  return declareRestartableDataHelper<T>(data_name, nullptr).get();
297 }

◆ getSharedPtr() [1/2]

std::shared_ptr< MooseObject > MooseObject::getSharedPtr ( )
inherited

Get another shared pointer to this object that has the same ownership group.

Wrapper around shared_from_this().

Definition at line 68 of file MooseObject.C.

Referenced by MFEMProblem::addBoundaryCondition(), MFEMProblem::addKernel(), and MFEMProblem::addMFEMSolver().

69 {
70  try
71  {
72  return shared_from_this();
73  }
74  catch (std::bad_weak_ptr &)
75  {
76  mooseError(not_shared_error);
77  }
78 }
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271

◆ getSharedPtr() [2/2]

std::shared_ptr< const MooseObject > MooseObject::getSharedPtr ( ) const
inherited

Definition at line 81 of file MooseObject.C.

82 {
83  try
84  {
85  return shared_from_this();
86  }
87  catch (std::bad_weak_ptr &)
88  {
89  mooseError(not_shared_error);
90  }
91 }
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271

◆ getSubdomainBoundaryIds()

const std::set< BoundaryID > & MooseMesh::getSubdomainBoundaryIds ( const SubdomainID  subdomain_id) const

Get the list of boundary ids associated with the given subdomain id.

Parameters
subdomain_idThe subdomain ID you want to get the boundary ids for.
Returns
All boundary IDs connected to elements in the give

Definition at line 3537 of file MooseMesh.C.

Referenced by getSubdomainInterfaceBoundaryIds(), and FEProblemBase::prepareMaterials().

3538 {
3539  const auto it = _sub_to_data.find(subdomain_id);
3540 
3541  if (it == _sub_to_data.end())
3542  mooseError("Unable to find subdomain ID: ", subdomain_id, '.');
3543 
3544  return it->second.boundary_ids;
3545 }
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271
std::unordered_map< SubdomainID, SubdomainData > _sub_to_data
Holds a map from subdomain ids to associated data.
Definition: MooseMesh.h:1831

◆ getSubdomainID()

SubdomainID MooseMesh::getSubdomainID ( const SubdomainName &  subdomain_name) const

Get the associated subdomain ID for the subdomain name.

Parameters
subdomain_nameThe name of the subdomain
Returns
The subdomain id from the passed subdomain name.

Definition at line 1769 of file MooseMesh.C.

Referenced by SystemBase::addVariable(), FEProblemBase::checkProblemIntegrity(), FVInterfaceKernel::FVInterfaceKernel(), TimedSubdomainModifier::getSubdomainIDAndCheck(), SolutionIC::initialSetup(), ElementSubdomainModifierBase::initialSetup(), PiecewiseByBlockFunctorMaterialTempl< T >::PiecewiseByBlockFunctorMaterialTempl(), PiecewiseConstantByBlockMaterialTempl< is_ad >::PiecewiseConstantByBlockMaterialTempl(), prepare(), setCoordSystem(), and setGeneralAxisymmetricCoordAxes().

1770 {
1771  return MooseMeshUtils::getSubdomainID(subdomain_name, getMesh());
1772 }
SubdomainID getSubdomainID(const SubdomainName &subdomain_name, const MeshBase &mesh)
Gets the subdomain ID associated with the given SubdomainName.
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488

◆ getSubdomainIDs() [1/2]

std::vector< SubdomainID > MooseMesh::getSubdomainIDs ( const std::vector< SubdomainName > &  subdomain_names) const

Get the associated subdomainIDs for the subdomain names that are passed in.

Parameters
subdomain_namesThe names of the subdomains
Returns
The subdomain ids from the passed subdomain names.

Definition at line 1775 of file MooseMesh.C.

Referenced by FEProblemBase::addAuxVariable(), FEProblemBase::addVariable(), MultiAppUserObjectTransfer::execute(), getBlocksMaxDimension(), BlockRestrictable::hasBlocks(), SubdomainsDivision::initialize(), BlockRestrictable::initializeBlockRestrictable(), MultiAppDofCopyTransfer::initialSetup(), ElementSubdomainModifierBase::initialSetup(), MultiAppGeometricInterpolationTransfer::interpolateTargetPoints(), and LayeredBase::LayeredBase().

1776 {
1777  return MooseMeshUtils::getSubdomainIDs(getMesh(), subdomain_name);
1778 }
std::vector< subdomain_id_type > getSubdomainIDs(const libMesh::MeshBase &mesh, const std::vector< SubdomainName > &subdomain_name)
Get the associated subdomainIDs for the subdomain names that are passed in.
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488

◆ getSubdomainIDs() [2/2]

std::set< SubdomainID > MooseMesh::getSubdomainIDs ( const std::set< SubdomainName > &  subdomain_names) const

Definition at line 1781 of file MooseMesh.C.

1782 {
1783  return MooseMeshUtils::getSubdomainIDs(getMesh(), subdomain_name);
1784 }
std::vector< subdomain_id_type > getSubdomainIDs(const libMesh::MeshBase &mesh, const std::vector< SubdomainName > &subdomain_name)
Get the associated subdomainIDs for the subdomain names that are passed in.
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488

◆ getSubdomainInterfaceBoundaryIds()

std::set< BoundaryID > MooseMesh::getSubdomainInterfaceBoundaryIds ( const SubdomainID  subdomain_id) const

Get the list of boundaries that contact the given subdomain.

Parameters
subdomain_idThe subdomain ID you want to get the boundary ids for.
Returns
All boundary IDs connected to elements in the given subdomain

Definition at line 3548 of file MooseMesh.C.

3549 {
3550  const auto & bnd_ids = getSubdomainBoundaryIds(subdomain_id);
3551  std::set<BoundaryID> boundary_ids(bnd_ids.begin(), bnd_ids.end());
3552  std::unordered_map<SubdomainID, std::set<BoundaryID>>::const_iterator it =
3553  _neighbor_subdomain_boundary_ids.find(subdomain_id);
3554 
3555  boundary_ids.insert(it->second.begin(), it->second.end());
3556 
3557  return boundary_ids;
3558 }
const std::set< BoundaryID > & getSubdomainBoundaryIds(const SubdomainID subdomain_id) const
Get the list of boundary ids associated with the given subdomain id.
Definition: MooseMesh.C:3537
std::unordered_map< SubdomainID, std::set< BoundaryID > > _neighbor_subdomain_boundary_ids
Holds a map from neighbor subomdain ids to the boundary ids that are attached to it.
Definition: MooseMesh.h:1834

◆ getSubdomainName()

const std::string & MooseMesh::getSubdomainName ( SubdomainID  subdomain_id) const

◆ getSubdomainNames()

std::vector< SubdomainName > MooseMesh::getSubdomainNames ( const std::vector< SubdomainID > &  subdomain_ids) const

Get the associated subdomainNames for the subdomain ids that are passed in.

Parameters
subdomain_idsThe ids of the subdomains
Returns
The subdomain names from the passed subdomain ids.

Definition at line 1807 of file MooseMesh.C.

Referenced by NonlinearSystemBase::checkKernelCoverage(), FEProblemBase::checkProblemIntegrity(), SampledOutput::cloneMesh(), BlockRestrictable::initializeBlockRestrictable(), and SolutionIC::initialSetup().

1808 {
1809  std::vector<SubdomainName> names(subdomain_ids.size());
1810 
1811  for (unsigned int i = 0; i < subdomain_ids.size(); i++)
1812  names[i] = getSubdomainName(subdomain_ids[i]);
1813 
1814  return names;
1815 }
const std::string & getSubdomainName(SubdomainID subdomain_id) const
Return the name of a block given an id.
Definition: MooseMesh.C:1801

◆ getUniqueCoordSystem()

Moose::CoordinateSystemType MooseMesh::getUniqueCoordSystem ( ) const

Get the coordinate system from the mesh, it must be the same in all subdomains otherwise this will error.

Definition at line 4225 of file MooseMesh.C.

Referenced by HDGKernel::HDGKernel().

4226 {
4227  const auto unique_system = _coord_sys.find(*meshSubdomains().begin())->second;
4228  // Check that it is actually unique
4229  bool result = std::all_of(
4230  std::next(_coord_sys.begin()),
4231  _coord_sys.end(),
4232  [unique_system](
4233  typename std::unordered_map<SubdomainID, Moose::CoordinateSystemType>::const_reference
4234  item) { return (item.second == unique_system); });
4235  if (!result)
4236  mooseError("The unique coordinate system of the mesh was requested by the mesh contains "
4237  "multiple blocks with different coordinate systems");
4238 
4240  mooseError("General axisymmetric coordinate axes are being used, and it is currently "
4241  "conservatively assumed that in this case there is no unique coordinate system.");
4242 
4243  return unique_system;
4244 }
std::map< SubdomainID, Moose::CoordinateSystemType > & _coord_sys
Type of coordinate system per subdomain.
Definition: MooseMesh.h:1901
bool usingGeneralAxisymmetricCoordAxes() const
Returns true if general axisymmetric coordinate axes are being used.
Definition: MooseMesh.C:4319
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271
const std::set< SubdomainID > & meshSubdomains() const
Returns a read-only reference to the set of subdomains currently present in the Mesh.
Definition: MooseMesh.C:3211

◆ ghostGhostedBoundaries()

void MooseMesh::ghostGhostedBoundaries ( )

Actually do the ghosting of boundaries that need to be ghosted to this processor.

Definition at line 3354 of file MooseMesh.C.

Referenced by FEProblemBase::ghostGhostedBoundaries().

3355 {
3356  // No need to do this if using a serial mesh
3357  // We do not need to ghost boundary elements when _need_ghost_ghosted_boundaries
3358  // is not true. _need_ghost_ghosted_boundaries can be set by a mesh generator
3359  // where boundaries are already ghosted accordingly
3361  return;
3362 
3363  TIME_SECTION("GhostGhostedBoundaries", 3);
3364 
3365  parallel_object_only();
3366 
3367  DistributedMesh & mesh = dynamic_cast<DistributedMesh &>(getMesh());
3368 
3369  // We clear ghosted elements that were added by previous invocations of this
3370  // method but leave ghosted elements that were added by other code, e.g.
3371  // OversampleOutput, untouched
3372  mesh.clear_extra_ghost_elems(_ghost_elems_from_ghost_boundaries);
3374 
3375  std::set<const Elem *, CompareElemsByLevel> boundary_elems_to_ghost;
3376  std::set<Node *> connected_nodes_to_ghost;
3377 
3378  std::vector<const Elem *> family_tree;
3379 
3380  for (const auto & t : mesh.get_boundary_info().build_side_list())
3381  {
3382  auto elem_id = std::get<0>(t);
3383  auto bc_id = std::get<2>(t);
3384 
3385  if (_ghosted_boundaries.find(bc_id) != _ghosted_boundaries.end())
3386  {
3387  Elem * elem = mesh.elem_ptr(elem_id);
3388 
3389 #ifdef LIBMESH_ENABLE_AMR
3390  elem->family_tree(family_tree);
3391  Elem * parent = elem->parent();
3392  while (parent)
3393  {
3394  family_tree.push_back(parent);
3395  parent = parent->parent();
3396  }
3397 #else
3398  family_tree.clear();
3399  family_tree.push_back(elem);
3400 #endif
3401  for (const auto & felem : family_tree)
3402  {
3403  boundary_elems_to_ghost.insert(felem);
3404 
3405  // The entries of connected_nodes_to_ghost need to be
3406  // non-constant, so that they will work in things like
3407  // UpdateDisplacedMeshThread. The container returned by
3408  // family_tree contains const Elems even when the Elem
3409  // it is called on is non-const, so once that interface
3410  // gets fixed we can remove this const_cast.
3411  for (unsigned int n = 0; n < felem->n_nodes(); ++n)
3412  connected_nodes_to_ghost.insert(const_cast<Node *>(felem->node_ptr(n)));
3413  }
3414  }
3415  }
3416 
3417  // We really do want to store this by value instead of by reference
3418  const auto prior_ghost_elems = mesh.extra_ghost_elems();
3419 
3421  connected_nodes_to_ghost.begin(),
3422  connected_nodes_to_ghost.end(),
3423  extra_ghost_elem_inserter<Node>(mesh));
3424 
3426  boundary_elems_to_ghost.begin(),
3427  boundary_elems_to_ghost.end(),
3428  extra_ghost_elem_inserter<Elem>(mesh));
3429 
3430  const auto & current_ghost_elems = mesh.extra_ghost_elems();
3431 
3432  std::set_difference(current_ghost_elems.begin(),
3433  current_ghost_elems.end(),
3434  prior_ghost_elems.begin(),
3435  prior_ghost_elems.end(),
3436  std::inserter(_ghost_elems_from_ghost_boundaries,
3438 }
const Elem * parent() const
bool _need_ghost_ghosted_boundaries
A parallel mesh generator such as DistributedRectilinearMeshGenerator already make everything ready...
Definition: MooseMesh.h:1868
void family_tree(std::vector< const Elem * > &family, bool reset=true) const
MeshBase & mesh
const Parallel::Communicator & comm() const
void allgather_packed_range(Context *context, Iter range_begin, const Iter range_end, OutputIter out, std::size_t approx_buffer_size=1000000) const
const BoundaryInfo & get_boundary_info() const
std::set< Elem * > _ghost_elems_from_ghost_boundaries
Set of elements ghosted by ghostGhostedBoundaries.
Definition: MooseMesh.h:1862
void build_side_list(std::vector< dof_id_type > &element_id_list, std::vector< unsigned short int > &side_list, std::vector< boundary_id_type > &bc_id_list) const
bool _use_distributed_mesh
False by default.
Definition: MooseMesh.h:1454
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
void family_tree(T elem, std::vector< T > &family, bool reset=true)
virtual const Elem * elem_ptr(const dof_id_type i) const=0
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139
std::set< unsigned int > _ghosted_boundaries
Definition: MooseMesh.h:1589

◆ hasBase()

bool MooseBase::hasBase ( ) const
inlineinherited
Returns
Whether or not this object has a registered base (set via InputParameters::registerBase())

Definition at line 142 of file MooseBase.h.

142 { return _pars.hasBase(); }
const InputParameters & _pars
The object&#39;s parameters.
Definition: MooseBase.h:366
bool hasBase() const

◆ hasElementID()

bool MooseMesh::hasElementID ( const std::string &  id_name) const
inline

Whether mesh has an extra element integer with a given name.

Definition at line 2194 of file MooseMesh.h.

Referenced by getElementIDIndex().

2195 {
2196  return getMesh().has_elem_integer(id_name);
2197 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488

◆ hasLowerD()

bool MooseMesh::hasLowerD ( ) const
inline
Returns
Whether there are any lower-dimensional blocks that are manifolds of higher-dimensional block faces

Definition at line 1424 of file MooseMesh.h.

Referenced by GhostLowerDElems::operator()().

1424 { return _has_lower_d; }
bool _has_lower_d
Whether there are any lower-dimensional blocks that are manifolds of higher-dimensional block faces...
Definition: MooseMesh.h:1847

◆ hasMeshBase()

bool MooseMesh::hasMeshBase ( ) const
inline

Whether mesh base object was constructed or not.

Definition at line 1115 of file MooseMesh.h.

Referenced by MeshGeneratorMesh::buildMesh().

1115 { return _mesh.get() != nullptr; }
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1459

◆ hasSecondOrderElements()

bool MooseMesh::hasSecondOrderElements ( )

check if the mesh has SECOND order elements

Definition at line 3751 of file MooseMesh.C.

Referenced by Assembly::adCurvatures(), Assembly::Assembly(), Assembly::havePRefinement(), MultiAppGeneralFieldNearestLocationTransfer::initialSetup(), and SolutionUserObjectBase::SolutionUserObjectBase().

3752 {
3753  bool mesh_has_second_order_elements = false;
3754  for (auto it = activeLocalElementsBegin(), end = activeLocalElementsEnd(); it != end; ++it)
3755  if ((*it)->default_order() == SECOND)
3756  {
3757  mesh_has_second_order_elements = true;
3758  break;
3759  }
3760 
3761  // We checked our local elements, so take the max over all processors.
3762  comm().max(mesh_has_second_order_elements);
3763  return mesh_has_second_order_elements;
3764 }
const Parallel::Communicator & comm() const
SECOND
MeshBase::element_iterator activeLocalElementsBegin()
Calls active_local_nodes_begin/end() on the underlying libMesh mesh object.
Definition: MooseMesh.C:3091
void max(const T &r, T &o, Request &req) const
const MeshBase::element_iterator activeLocalElementsEnd()
Definition: MooseMesh.C:3097

◆ init()

void MooseMesh::init ( )
virtual

Initialize the Mesh object.

Most of the time this will turn around and call build_mesh so the child class can build the Mesh object.

However, during Recovery this will read the CPA file...

If the mesh base hasn't been constructed by the time init is called, just do it here. This can happen if somebody builds a mesh outside of the normal Action system. Forcing developers to create, construct the MeshBase, and then init separately is a bit much for casual use but it gives us the ability to run MeshGenerators in-between.

Definition at line 2913 of file MooseMesh.C.

2914 {
2921  if (!_mesh)
2923 
2925  mooseError("You cannot use the mesh splitter capability with DistributedMesh!");
2926 
2927  TIME_SECTION("init", 2);
2928 
2930  {
2931  // Some partitioners are not idempotent. Some recovery data
2932  // files require partitioning to match mesh partitioning. This
2933  // means that, when recovering, we can't safely repartition.
2934  const bool skip_partitioning_later = getMesh().skip_partitioning();
2935  getMesh().skip_partitioning(true);
2936  const bool allow_renumbering_later = getMesh().allow_renumbering();
2937  getMesh().allow_renumbering(false);
2938 
2939  // For now, only read the recovery mesh on the Ultimate Master..
2940  // sub-apps need to just build their mesh like normal
2941  {
2942  TIME_SECTION("readRecoveredMesh", 2);
2944  }
2945 
2946  getMesh().allow_renumbering(allow_renumbering_later);
2947  getMesh().skip_partitioning(skip_partitioning_later);
2948  }
2949  else // Normally just build the mesh
2950  {
2951  // Don't allow partitioning during building
2952  if (_app.isSplitMesh())
2953  getMesh().skip_partitioning(true);
2954  buildMesh();
2955 
2956  // Re-enable partitioning so the splitter can partition!
2957  if (_app.isSplitMesh())
2958  getMesh().skip_partitioning(false);
2959 
2960  if (getParam<bool>("build_all_side_lowerd_mesh"))
2961  buildLowerDMesh();
2962  }
2963 
2965 }
static const std::string & checkpointSuffix()
The file suffix for the checkpoint mesh.
Definition: MooseApp.C:3112
void computeMaxPerElemAndSide()
Compute the maximum numbers per element and side.
Definition: MooseMesh.C:1074
virtual void read(const std::string &name, void *mesh_data=nullptr, bool skip_renumber_nodes_and_elements=false, bool skip_find_neighbors=false)=0
bool isUltimateMaster() const
Whether or not this app is the ultimate master app.
Definition: MooseApp.h:820
void allow_renumbering(bool allow)
void skip_partitioning(bool skip)
void buildLowerDMesh()
Build lower-d mesh for all sides.
Definition: MooseMesh.C:673
virtual void buildMesh()=0
Must be overridden by child classes.
bool isSplitMesh() const
Whether or not this is a split mesh operation.
Definition: MooseApp.C:1853
bool _allow_recovery
Whether or not this Mesh is allowed to read a recovery file.
Definition: MooseMesh.h:1850
bool _use_distributed_mesh
False by default.
Definition: MooseMesh.h:1454
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
std::unique_ptr< MeshBase > buildMeshBaseObject(unsigned int dim=libMesh::invalid_uint)
Method to construct a libMesh::MeshBase object that is normally set and used by the MooseMesh object ...
Definition: MooseMesh.C:2894
MooseApp & _app
The MOOSE application this is associated with.
Definition: MooseBase.h:357
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1459
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271
bool isRecovering() const
Whether or not this is a "recover" calculation.
Definition: MooseApp.C:1841
std::string getRestartRecoverFileBase() const
The file_base for the recovery file.
Definition: MooseApp.h:494

◆ interiorLowerDBlocks()

const std::set<SubdomainID>& MooseMesh::interiorLowerDBlocks ( ) const
inline

◆ isBoundaryElem() [1/2]

bool MooseMesh::isBoundaryElem ( dof_id_type  elem_id) const

Returns true if the requested element is in the list of boundary elements, false otherwise.

Definition at line 3631 of file MooseMesh.C.

Referenced by BoundaryMarker::computeElementMarker().

3632 {
3633  bool found_elem = false;
3634  for (const auto & it : _bnd_elem_ids)
3635  {
3636  if (it.second.find(elem_id) != it.second.end())
3637  {
3638  found_elem = true;
3639  break;
3640  }
3641  }
3642  return found_elem;
3643 }
std::unordered_map< boundary_id_type, std::unordered_set< dof_id_type > > _bnd_elem_ids
Map of set of elem IDs connected to each boundary.
Definition: MooseMesh.h:1576

◆ isBoundaryElem() [2/2]

bool MooseMesh::isBoundaryElem ( dof_id_type  elem_id,
BoundaryID  bnd_id 
) const

Returns true if the requested element is in the list of boundary elements for the specified boundary, false otherwise.

Definition at line 3646 of file MooseMesh.C.

3647 {
3648  bool found_elem = false;
3649  auto it = _bnd_elem_ids.find(bnd_id);
3650  if (it != _bnd_elem_ids.end())
3651  if (it->second.find(elem_id) != it->second.end())
3652  found_elem = true;
3653  return found_elem;
3654 }
std::unordered_map< boundary_id_type, std::unordered_set< dof_id_type > > _bnd_elem_ids
Map of set of elem IDs connected to each boundary.
Definition: MooseMesh.h:1576

◆ isBoundaryFullyExternalToSubdomains()

bool MooseMesh::isBoundaryFullyExternalToSubdomains ( BoundaryID  bid,
const std::set< SubdomainID > &  blk_group 
) const

Returns whether a boundary (given by its id) is not crossing through a group of blocks, by which we mean that elements on both sides of the boundary are in those blocks.

Parameters
bidthe id of the boundary of interest
blk_groupthe group of blocks potentially traversed
Returns
whether the boundary does not cross between the subdomains in the group

Definition at line 1411 of file MooseMesh.C.

1413 {
1414  mooseAssert(_bnd_elem_range, "Boundary element range is not initialized");
1415 
1416  // Loop over all side elements of the mesh, select those on the boundary
1417  for (const auto & bnd_elem : *_bnd_elem_range)
1418  {
1419  const auto & [elem_ptr, elem_side, elem_bid] = *bnd_elem;
1420  if (elem_bid == bid)
1421  {
1422  // If an element is internal to the group of subdomain, check the neighbor
1423  if (blk_group.find(elem_ptr->subdomain_id()) != blk_group.end())
1424  {
1425  const auto * const neighbor = elem_ptr->neighbor_ptr(elem_side);
1426 
1427  // If we did not ghost the neighbor, we cannot decide
1428  if (neighbor == libMesh::remote_elem)
1429  mooseError("Insufficient level of geometrical ghosting to determine "
1430  "if a boundary is internal to the mesh");
1431  // If the neighbor does not exist, then we are on the edge of the mesh
1432  if (!neighbor)
1433  continue;
1434  // If the neighbor is also in the group of subdomain,
1435  // then the boundary cuts the subdomains
1436  if (blk_group.find(neighbor->subdomain_id()) != blk_group.end())
1437  return false;
1438  }
1439  }
1440  }
1441  return true;
1442 }
std::unique_ptr< libMesh::StoredRange< MooseMesh::const_bnd_elem_iterator, const BndElement * > > _bnd_elem_range
Definition: MooseMesh.h:1533
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271
const RemoteElem * remote_elem

◆ isBoundaryNode() [1/2]

bool MooseMesh::isBoundaryNode ( dof_id_type  node_id) const

Returns true if the requested node is in the list of boundary nodes, false otherwise.

Definition at line 3605 of file MooseMesh.C.

Referenced by LowerBoundNodalKernel::computeQpJacobian(), UpperBoundNodalKernel::computeQpJacobian(), LowerBoundNodalKernel::computeQpOffDiagJacobian(), UpperBoundNodalKernel::computeQpOffDiagJacobian(), LowerBoundNodalKernel::computeQpResidual(), UpperBoundNodalKernel::computeQpResidual(), and NodalNormalsPreprocessor::execute().

3606 {
3607  bool found_node = false;
3608  for (const auto & it : _bnd_node_ids)
3609  {
3610  if (it.second.find(node_id) != it.second.end())
3611  {
3612  found_node = true;
3613  break;
3614  }
3615  }
3616  return found_node;
3617 }
std::map< boundary_id_type, std::set< dof_id_type > > _bnd_node_ids
Map of sets of node IDs in each boundary.
Definition: MooseMesh.h:1568

◆ isBoundaryNode() [2/2]

bool MooseMesh::isBoundaryNode ( dof_id_type  node_id,
BoundaryID  bnd_id 
) const

Returns true if the requested node is in the list of boundary nodes for the specified boundary, false otherwise.

Definition at line 3620 of file MooseMesh.C.

3621 {
3622  bool found_node = false;
3623  std::map<boundary_id_type, std::set<dof_id_type>>::const_iterator it = _bnd_node_ids.find(bnd_id);
3624  if (it != _bnd_node_ids.end())
3625  if (it->second.find(node_id) != it->second.end())
3626  found_node = true;
3627  return found_node;
3628 }
std::map< boundary_id_type, std::set< dof_id_type > > _bnd_node_ids
Map of sets of node IDs in each boundary.
Definition: MooseMesh.h:1568

◆ isCustomPartitionerRequested()

bool MooseMesh::isCustomPartitionerRequested ( ) const

Setter and getter for _custom_partitioner_requested.

Definition at line 3745 of file MooseMesh.C.

3746 {
3748 }
bool _custom_partitioner_requested
Definition: MooseMesh.h:1472

◆ isDisplaced() [1/2]

void MooseMesh::isDisplaced ( bool  is_displaced)
inline

Set whether this mesh is a displaced mesh.

Definition at line 1234 of file MooseMesh.h.

1234 { _is_displaced = is_displaced; }
bool _is_displaced
Whether this mesh is displaced.
Definition: MooseMesh.h:1892

◆ isDisplaced() [2/2]

bool MooseMesh::isDisplaced ( ) const
inline

whether this mesh is a displaced mesh

Definition at line 1239 of file MooseMesh.h.

1239 { return _is_displaced; }
bool _is_displaced
Whether this mesh is displaced.
Definition: MooseMesh.h:1892

◆ isDistributedMesh()

virtual bool MooseMesh::isDistributedMesh ( ) const
inlinevirtual

◆ isFiniteVolumeInfoDirty()

bool MooseMesh::isFiniteVolumeInfoDirty ( ) const
inline
Returns
whether the finite volume information is dirty

Definition at line 1330 of file MooseMesh.h.

Referenced by SideIntegralPostprocessor::initialSetup(), and FEProblemBase::meshChanged().

1330 { return _finite_volume_info_dirty; }
bool _finite_volume_info_dirty
Definition: MooseMesh.h:1646

◆ isKokkosObject()

bool MooseObject::isKokkosObject ( IsKokkosObjectKey &&  ) const
inlineinherited

Get whether this object is a Kokkos functor The parameter is set by the Kokkos base classes:

Definition at line 72 of file MooseObject.h.

Referenced by BlockRestrictable::initializeBlockRestrictable(), and BoundaryRestrictable::initializeBoundaryRestrictable().

73  {
75  }
const InputParameters & parameters() const
Get the parameters of the object.
Definition: MooseBase.h:131
static const std::string kokkos_object_param
The name of the parameter that indicates an object is a Kokkos functor.
Definition: MooseBase.h:64
bool isParamValid(const std::string &name) const
This method returns parameters that have been initialized in one fashion or another, i.e.

◆ isLowerD()

bool MooseMesh::isLowerD ( const SubdomainID  subdomain_id) const
inline
Returns
Whether the subdomain indicated by subdomain_id is a lower-dimensional manifold of some higher-dimensional subdomain, or in implementation speak, whether the elements of this subdomain have non-null interior parents

Definition at line 2240 of file MooseMesh.h.

Referenced by ProjectionAux::computeValue(), ProjectionAux::elemOnNodeVariableIsDefinedOn(), MooseVariableBase::MooseVariableBase(), and ProjectionAux::ProjectionAux().

2241 {
2242  return libmesh_map_find(_sub_to_data, subdomain_id).is_lower_d;
2243 }
std::unordered_map< SubdomainID, SubdomainData > _sub_to_data
Holds a map from subdomain ids to associated data.
Definition: MooseMesh.h:1831

◆ isParallelTypeForced()

bool MooseMesh::isParallelTypeForced ( ) const
inline

Tell the user if the distribution was overriden for any reason.

Definition at line 1017 of file MooseMesh.h.

1017 { return _parallel_type_overridden; }
bool _parallel_type_overridden
Definition: MooseMesh.h:1456

◆ isParamSetByUser()

bool MooseBase::isParamSetByUser ( const std::string &  name) const
inlineinherited

Test if the supplied parameter is set by a user, as opposed to not set or set to default.

Parameters
nameThe name of the parameter to test

Definition at line 205 of file MooseBase.h.

Referenced by SetupDebugAction::act(), DiffusionCG::addFEBCs(), DiffusionPhysicsBase::addInitialConditions(), MFEMMesh::buildMesh(), MFEMDomainSubMesh::buildSubMesh(), LibtorchNeuralNetControl::conditionalParameterError(), ConservativeAdvectionBCTempl< false >::ConservativeAdvectionBCTempl(), MooseApp::copyInputs(), DiffusionPhysicsBase::DiffusionPhysicsBase(), MooseApp::errorCheck(), MooseBase::getRenamedParam(), DefaultConvergenceBase::getSharedExecutionerParam(), AddVariableAction::init(), PhysicsBase::initializePhysics(), ElementSubdomainModifierBase::initialSetup(), MatrixSymmetryCheck::MatrixSymmetryCheck(), MeshDiagnosticsGenerator::MeshDiagnosticsGenerator(), MultiAppGeneralFieldTransfer::MultiAppGeneralFieldTransfer(), SolutionInvalidityOutput::output(), Output::Output(), MultiAppGeneralFieldTransfer::outputValueConflicts(), PetscExternalPartitioner::partition(), PiecewiseTabularBase::PiecewiseTabularBase(), prepare(), SolutionUserObjectBase::readXda(), PhysicsBase::reportPotentiallyMissedParameters(), MooseApp::runInputFile(), MooseApp::runInputs(), MFEMSolverBase::setPreconditioner(), SetupMeshAction::setupMesh(), MooseApp::setupOptions(), SideSetsFromBoundingBoxGenerator::SideSetsFromBoundingBoxGenerator(), TagVectorAux::TagVectorAux(), TimedSubdomainModifier::TimedSubdomainModifier(), and XYDelaunayGenerator::XYDelaunayGenerator().

206  {
207  return _pars.isParamSetByUser(name);
208  }
const InputParameters & _pars
The object&#39;s parameters.
Definition: MooseBase.h:366
const std::string & name() const
Get the name of the class.
Definition: MooseBase.h:103
bool isParamSetByUser(const std::string &name) const
Method returns true if the parameter was set by the user.

◆ isParamValid()

bool MooseBase::isParamValid ( const std::string &  name) const
inlineinherited

Test if the supplied parameter is valid.

Parameters
nameThe name of the parameter to test

Definition at line 199 of file MooseBase.h.

Referenced by HierarchicalGridPartitioner::_do_partition(), GridPartitioner::_do_partition(), CopyNodalVarsAction::act(), SetupMeshAction::act(), SetupDebugAction::act(), ComposeTimeStepperAction::act(), SetAdaptivityOptionsAction::act(), AddVariableAction::act(), CreateDisplacedProblemAction::act(), CommonOutputAction::act(), DiffusionCG::addFEKernels(), DiffusionFV::addFVBCs(), DiffusionFV::addFVKernels(), DiffusionPhysicsBase::addInitialConditions(), CylinderComponent::addMeshGenerators(), AddPeriodicBCAction::AddPeriodicBCAction(), DiffusionPhysicsBase::addPostprocessors(), AdvectiveFluxAux::AdvectiveFluxAux(), ArrayHFEMDirichletBC::ArrayHFEMDirichletBC(), ArrayVarReductionAux::ArrayVarReductionAux(), AddPeriodicBCAction::autoTranslationBoundaries(), BicubicSplineFunction::BicubicSplineFunction(), BlockDeletionGenerator::BlockDeletionGenerator(), Boundary2DDelaunayGenerator::Boundary2DDelaunayGenerator(), TimedSubdomainModifier::buildFromFile(), PiecewiseTabularBase::buildFromFile(), PiecewiseTabularBase::buildFromJSON(), ParsedChainControl::buildFunction(), GeneratedMesh::buildMesh(), buildTypedMesh(), CartesianGridDivision::CartesianGridDivision(), CartesianMeshGenerator::CartesianMeshGenerator(), MultiAppTransfer::checkParentAppUserObjectExecuteOn(), LibmeshPartitioner::clone(), SampledOutput::cloneMesh(), CombinerGenerator::CombinerGenerator(), FunctorAux::computeValue(), ConservativeAdvectionBCTempl< false >::ConservativeAdvectionBCTempl(), ConservativeAdvectionTempl< is_ad >::ConservativeAdvectionTempl(), FEProblemSolve::convergenceSetup(), CopyMeshPartitioner::CopyMeshPartitioner(), CSVReaderVectorPostprocessor::CSVReaderVectorPostprocessor(), CutMeshByLevelSetGeneratorBase::CutMeshByLevelSetGeneratorBase(), ConstantReporter::declareConstantReporterValue(), ConstantReporter::declareConstantReporterValues(), DGKernelBase::DGKernelBase(), DiffusionFluxAux::DiffusionFluxAux(), DomainUserObject::DomainUserObject(), DynamicObjectRegistrationAction::DynamicObjectRegistrationAction(), Eigenvalue::Eigenvalue(), ElementGroupCentroidPositions::ElementGroupCentroidPositions(), PIDTransientControl::execute(), MultiAppNearestNodeTransfer::execute(), MultiAppUserObjectTransfer::execute(), Exodus::Exodus(), ExtraIDIntegralReporter::ExtraIDIntegralReporter(), ExtraIDIntegralVectorPostprocessor::ExtraIDIntegralVectorPostprocessor(), FEProblemBase::FEProblemBase(), FEProblemSolve::FEProblemSolve(), FileOutput::FileOutput(), SpatialUserObjectVectorPostprocessor::fillPoints(), CombinerGenerator::fillPositions(), MultiApp::fillPositions(), FiniteDifferencePreconditioner::FiniteDifferencePreconditioner(), FixedPointSolve::FixedPointSolve(), FunctionDT::FunctionDT(), FunctionValuePostprocessor::FunctionValuePostprocessor(), FVInterfaceKernel::FVInterfaceKernel(), FVMassMatrix::FVMassMatrix(), AddMetaDataGenerator::generate(), ExtraNodesetGenerator::generate(), FileMeshGenerator::generate(), BreakBoundaryOnSubdomainGenerator::generate(), ElementGenerator::generate(), LowerDBlockFromSidesetGenerator::generate(), SubdomainPerElementGenerator::generate(), BlockDeletionGenerator::generate(), GeneratedMeshGenerator::generate(), ParsedSubdomainGeneratorBase::generate(), SideSetsFromNodeSetsGenerator::generate(), MeshExtruderGenerator::generate(), ParsedExtraElementIDGenerator::generate(), XYZDelaunayGenerator::generate(), XYMeshLineCutter::generate(), XYDelaunayGenerator::generate(), SubdomainBoundingBoxGenerator::generate(), DistributedRectilinearMeshGenerator::generate(), PropertyReadFile::getFileNames(), MultiAppNearestNodeTransfer::getLocalEntitiesAndComponents(), MeshGenerator::getMeshGeneratorNameFromParam(), MeshGenerator::getMeshGeneratorNamesFromParam(), MooseBase::getRenamedParam(), MultiAppNearestNodeTransfer::getTargetLocalNodes(), Terminator::handleMessage(), HFEMDirichletBC::HFEMDirichletBC(), EigenExecutionerBase::init(), IterationAdaptiveDT::init(), Eigenvalue::init(), AdvancedOutput::initExecutionTypes(), BlockRestrictable::initializeBlockRestrictable(), BoundaryRestrictable::initializeBoundaryRestrictable(), MultiAppCloneReporterTransfer::initialSetup(), SolutionIC::initialSetup(), MultiAppVariableValueSampleTransfer::initialSetup(), PiecewiseTabularBase::initialSetup(), ParsedConvergence::initialSetup(), SolutionScalarAux::initialSetup(), SolutionAux::initialSetup(), Console::initialSetup(), MooseParsedVectorFunction::initialSetup(), MultiAppGeneralFieldTransfer::initialSetup(), MooseParsedGradFunction::initialSetup(), MooseParsedFunction::initialSetup(), SampledOutput::initSample(), IterationAdaptiveDT::IterationAdaptiveDT(), LeastSquaresFit::LeastSquaresFit(), LibmeshPartitioner::LibmeshPartitioner(), LibtorchNeuralNetControl::LibtorchNeuralNetControl(), MassMatrix::MassMatrix(), MatCoupledForce::MatCoupledForce(), MatDiffusionBase< Real >::MatDiffusionBase(), MeshGeneratorComponent::MeshGeneratorComponent(), MFEMProblemSolve::MFEMProblemSolve(), MooseMesh(), MoosePreconditioner::MoosePreconditioner(), MooseStaticCondensationPreconditioner::MooseStaticCondensationPreconditioner(), MooseVariableBase::MooseVariableBase(), MooseVariableFV< Real >::MooseVariableFV(), MortarConstraintBase::MortarConstraintBase(), MoveNodeGenerator::MoveNodeGenerator(), MultiApp::MultiApp(), MultiAppCloneReporterTransfer::MultiAppCloneReporterTransfer(), MultiAppGeneralFieldNearestLocationTransfer::MultiAppGeneralFieldNearestLocationTransfer(), MultiAppGeneralFieldShapeEvaluationTransfer::MultiAppGeneralFieldShapeEvaluationTransfer(), MultiAppGeneralFieldTransfer::MultiAppGeneralFieldTransfer(), MultiAppGeneralFieldUserObjectTransfer::MultiAppGeneralFieldUserObjectTransfer(), MultiAppPostprocessorInterpolationTransfer::MultiAppPostprocessorInterpolationTransfer(), MultiAppPostprocessorTransfer::MultiAppPostprocessorTransfer(), MultiAppReporterTransfer::MultiAppReporterTransfer(), MultiAppTransfer::MultiAppTransfer(), MultiAppUserObjectTransfer::MultiAppUserObjectTransfer(), MultiAppVariableValueSampleTransfer::MultiAppVariableValueSampleTransfer(), MultiSystemSolveObject::MultiSystemSolveObject(), NodeSetsGeneratorBase::NodeSetsGeneratorBase(), EigenExecutionerBase::normalizeSolution(), Output::Output(), MultiAppGeneralFieldTransfer::outputValueConflicts(), ParsedCurveGenerator::ParsedCurveGenerator(), PetscOutput::PetscOutput(), PhysicsBasedPreconditioner::PhysicsBasedPreconditioner(), PIDTransientControl::PIDTransientControl(), PiecewiseTabularBase::PiecewiseTabularBase(), PlaneIDMeshGenerator::PlaneIDMeshGenerator(), prepare(), MooseBase::queryParam(), MultiApp::readCommandLineArguments(), SolutionUserObjectBase::readExodusII(), ReferenceResidualInterface::ReferenceResidualInterface(), RenameBlockGenerator::RenameBlockGenerator(), ReporterPointSource::ReporterPointSource(), PhysicsBase::reportPotentiallyMissedParameters(), ParsedSubdomainMeshGenerator::setBlockName(), setCoordSystem(), FileOutput::setFileBase(), FileOutput::setFileBaseInternal(), Split::setup(), SideSetsGeneratorBase::setup(), SetupMeshAction::setupMesh(), MooseApp::setupOptions(), Output::setWallTimeIntervalFromCommandLineParam(), SideDiffusiveFluxIntegralTempl< is_ad, Real >::SideDiffusiveFluxIntegralTempl(), SideSetsGeneratorBase::SideSetsGeneratorBase(), SolutionUserObjectBase::SolutionUserObjectBase(), WebServerControl::startServer(), Terminator::Terminator(), TimeIntervalTimes::TimeIntervalTimes(), TimePeriod::TimePeriod(), MultiAppDofCopyTransfer::transfer(), TransformGenerator::TransformGenerator(), TransientBase::TransientBase(), FunctorIC::value(), VariableCondensationPreconditioner::VariableCondensationPreconditioner(), VectorMagnitudeFunctorMaterialTempl< is_ad >::VectorMagnitudeFunctorMaterialTempl(), WebServerControl::WebServerControl(), XYDelaunayGenerator::XYDelaunayGenerator(), and XYZDelaunayGenerator::XYZDelaunayGenerator().

199 { return _pars.isParamValid(name); }
const InputParameters & _pars
The object&#39;s parameters.
Definition: MooseBase.h:366
const std::string & name() const
Get the name of the class.
Definition: MooseBase.h:103
bool isParamValid(const std::string &name) const
This method returns parameters that have been initialized in one fashion or another, i.e.

◆ isPartitionerForced()

bool MooseMesh::isPartitionerForced ( ) const
inline

Tell the user if the partitioner was overriden for any reason.

Definition at line 1037 of file MooseMesh.h.

1037 { return _partitioner_overridden; }
bool _partitioner_overridden
Definition: MooseMesh.h:1468

◆ isRegularOrthogonal()

bool MooseMesh::isRegularOrthogonal ( )
inline

Getter to query if the mesh was detected to be regular and orthogonal.

Definition at line 1067 of file MooseMesh.h.

Referenced by AddPeriodicBCAction::setPeriodicVars().

1067 { return _regular_orthogonal_mesh; }
bool _regular_orthogonal_mesh
Boolean indicating whether this mesh was detected to be regular and orthogonal.
Definition: MooseMesh.h:1608

◆ isSemiLocal()

bool MooseMesh::isSemiLocal ( Node *const  node) const

Returns true if the node is semi-local.

Parameters
nodeNode pointer
Returns
true is the node is semi-local, false otherwise

Definition at line 1007 of file MooseMesh.C.

1008 {
1009  return _semilocal_node_list.find(node) != _semilocal_node_list.end();
1010 }
std::set< Node * > _semilocal_node_list
Used for generating the semilocal node range.
Definition: MooseMesh.h:1519
virtual const Node & node(const dof_id_type i) const
Various accessors (pointers/references) for Node "i".
Definition: MooseMesh.C:835

◆ isSplit()

bool MooseMesh::isSplit ( ) const
inline
Returns
Whether or not this mesh comes from a split mesh

Definition at line 1353 of file MooseMesh.h.

1353 { return _is_split; }
const bool _is_split
Whether or not we are using a (pre-)split mesh (automatically DistributedMesh)
Definition: MooseMesh.h:1617

◆ isTranslatedPeriodic()

bool MooseMesh::isTranslatedPeriodic ( unsigned int  nonlinear_var_num,
unsigned int  component 
) const

Returns whether this generated mesh is periodic in the given dimension for the given variable.

Parameters
nonlinear_var_num- The nonlinear variable number
component- An integer representing the desired component (dimension)

Definition at line 2289 of file MooseMesh.C.

Referenced by minPeriodicVector().

2290 {
2291  mooseAssert(component < dimension(), "Requested dimension out of bounds");
2292 
2293  if (_periodic_dim.find(nonlinear_var_num) != _periodic_dim.end())
2294  return _periodic_dim.at(nonlinear_var_num)[component];
2295  else
2296  return false;
2297 }
virtual unsigned int dimension() const
Returns MeshBase::mesh_dimension(), (not MeshBase::spatial_dimension()!) of the underlying libMesh me...
Definition: MooseMesh.C:2968
std::map< unsigned int, std::vector< bool > > _periodic_dim
A map of vectors indicating which dimensions are periodic in a regular orthogonal mesh for the specif...
Definition: MooseMesh.h:1657

◆ lengthUnit()

const MooseUnits & MooseMesh::lengthUnit ( ) const
Returns
the length unit of this mesh provided through the coordinate transformation object

Definition at line 4370 of file MooseMesh.C.

4371 {
4372  mooseAssert(_coord_transform, "This must be non-null");
4373  return _coord_transform->lengthUnit();
4374 }
std::unique_ptr< MooseAppCoordTransform > _coord_transform
A coordinate transformation object that describes how to transform this problem&#39;s coordinate system i...
Definition: MooseMesh.h:1911

◆ localNodesBegin() [1/2]

MeshBase::node_iterator MooseMesh::localNodesBegin ( )

Calls local_nodes_begin/end() on the underlying libMesh mesh object.

Definition at line 3067 of file MooseMesh.C.

3068 {
3069  return getMesh().local_nodes_begin();
3070 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488

◆ localNodesBegin() [2/2]

MeshBase::const_node_iterator MooseMesh::localNodesBegin ( ) const

Definition at line 3079 of file MooseMesh.C.

3080 {
3081  return getMesh().local_nodes_begin();
3082 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488

◆ localNodesEnd() [1/2]

MeshBase::node_iterator MooseMesh::localNodesEnd ( )

Definition at line 3073 of file MooseMesh.C.

3074 {
3075  return getMesh().local_nodes_end();
3076 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488

◆ localNodesEnd() [2/2]

MeshBase::const_node_iterator MooseMesh::localNodesEnd ( ) const

Definition at line 3085 of file MooseMesh.C.

3086 {
3087  return getMesh().local_nodes_end();
3088 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488

◆ mapPoints()

void MooseMesh::mapPoints ( const std::vector< Point > &  from,
const std::vector< Point > &  to,
std::vector< QpMap > &  qp_map 
)
private

Find the closest points that map "from" to "to" and fill up "qp_map".

Essentially, for each point in "from" find the closest point in "to".

Parameters
fromThe reference positions in the parent of the the points we're mapping from
toThe reference positions in the parent of the the points we're mapping to
qp_mapThis will be filled with QpMap objects holding the mappings.

Definition at line 2628 of file MooseMesh.C.

Referenced by buildPRefinementAndCoarseningMaps(), and findAdaptivityQpMaps().

2631 {
2632  unsigned int n_from = from.size();
2633  unsigned int n_to = to.size();
2634 
2635  qp_map.resize(n_from);
2636 
2637  for (unsigned int i = 0; i < n_from; ++i)
2638  {
2639  const Point & from_point = from[i];
2640 
2641  QpMap & current_map = qp_map[i];
2642 
2643  for (unsigned int j = 0; j < n_to; ++j)
2644  {
2645  const Point & to_point = to[j];
2646  Real distance = (from_point - to_point).norm();
2647 
2648  if (distance < current_map._distance)
2649  {
2650  current_map._distance = distance;
2651  current_map._from = i;
2652  current_map._to = j;
2653  }
2654  }
2655  }
2656 }
Helper object for holding qp mapping info.
Definition: MooseMesh.h:73
unsigned int _to
The qp to map to.
Definition: MooseMesh.h:82
Real distance(const Point &p)
unsigned int _from
The qp to map from.
Definition: MooseMesh.h:79
auto norm(const T &a) -> decltype(std::abs(a))
DIE A HORRIBLE DEATH HERE typedef LIBMESH_DEFAULT_SCALAR_TYPE Real
Real _distance
The distance between them.
Definition: MooseMesh.h:85

◆ markFiniteVolumeInfoDirty()

void MooseMesh::markFiniteVolumeInfoDirty ( )
inline

Mark the finite volume information as dirty.

Definition at line 1325 of file MooseMesh.h.

1325 { _finite_volume_info_dirty = true; }
bool _finite_volume_info_dirty
Definition: MooseMesh.h:1646

◆ maxElementID()

dof_id_type MooseMesh::maxElementID ( unsigned int  elem_id_index) const
inline

Return the maximum element ID for an extra element integer with its accessing index.

Definition at line 1130 of file MooseMesh.h.

1130 { return _max_ids[elem_id_index]; }
std::vector< dof_id_type > _max_ids
Maximum integer ID for each extra element integer.
Definition: MooseMesh.h:1873

◆ maxElemId()

dof_id_type MooseMesh::maxElemId ( ) const
virtual

Definition at line 3133 of file MooseMesh.C.

Referenced by SolutionUserObjectBase::pointValueGradientWrapper(), and SolutionUserObjectBase::pointValueWrapper().

3134 {
3135  return getMesh().max_elem_id();
3136 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
virtual dof_id_type max_elem_id() const=0

◆ maxHLevel()

unsigned int MooseMesh::maxHLevel ( ) const
inline

Returns the maximum h-refinement level of all elements.

Definition at line 1388 of file MooseMesh.h.

1388 { return _max_h_level; }
unsigned int _max_h_level
Maximum h-refinement level of all elements.
Definition: MooseMesh.h:1924

◆ maxNodeId()

dof_id_type MooseMesh::maxNodeId ( ) const
virtual

Calls max_node/elem_id() on the underlying libMesh mesh object.

This may be larger than n_nodes/elem() in cases where the id numbering is not contiguous.

Definition at line 3127 of file MooseMesh.C.

3128 {
3129  return getMesh().max_node_id();
3130 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
virtual dof_id_type max_node_id() const=0

◆ maxPLevel()

unsigned int MooseMesh::maxPLevel ( ) const
inline

Returns the maximum p-refinement level of all elements.

Definition at line 1383 of file MooseMesh.h.

1383 { return _max_p_level; }
unsigned int _max_p_level
Maximum p-refinement level of all elements.
Definition: MooseMesh.h:1922

◆ meshBoundaryIds()

const std::set< BoundaryID > & MooseMesh::meshBoundaryIds ( ) const

Returns a read-only reference to the set of boundary IDs currently present in the Mesh.

Definition at line 3217 of file MooseMesh.C.

Referenced by BoundaryRestrictable::isBoundarySubset().

3218 {
3219  return _mesh_boundary_ids;
3220 }
std::set< BoundaryID > _mesh_boundary_ids
A set of boundary IDs currently present in the mesh.
Definition: MooseMesh.h:1555

◆ meshChanged()

void MooseMesh::meshChanged ( )

Declares that the MooseMesh has changed, invalidates cached data and rebuilds caches.

Sets a flag so that clients of the MooseMesh also know when it has changed.

Definition at line 897 of file MooseMesh.C.

Referenced by DisplacedProblem::init(), FEProblemBase::init(), DisplacedProblem::meshChanged(), and FEProblemBase::meshChanged().

898 {
899  TIME_SECTION("meshChanged", 3, "Updating Because Mesh Changed");
900 
901  update();
902 
903  // Delete all of the cached ranges
904  _active_local_elem_range.reset();
905  _active_node_range.reset();
907  _local_node_range.reset();
908  _bnd_node_range.reset();
909  _bnd_elem_range.reset();
910 
911  // Rebuild the ranges
917 
918  // Call the callback function onMeshChanged
919  onMeshChanged();
920 }
std::unique_ptr< libMesh::NodeRange > _active_node_range
Definition: MooseMesh.h:1528
libMesh::ConstElemRange * getActiveLocalElementRange()
Return pointers to range objects for various types of ranges (local nodes, boundary elems...
Definition: MooseMesh.C:1276
virtual void onMeshChanged()
Declares a callback function that is executed at the conclusion of meshChanged(). ...
Definition: MooseMesh.C:923
std::unique_ptr< libMesh::StoredRange< MooseMesh::const_bnd_elem_iterator, const BndElement * > > _bnd_elem_range
Definition: MooseMesh.h:1533
std::unique_ptr< libMesh::ConstElemRange > _active_local_elem_range
A range for use with threading.
Definition: MooseMesh.h:1525
libMesh::ConstNodeRange * getLocalNodeRange()
Definition: MooseMesh.C:1313
void update()
Calls buildNodeListFromSideList(), buildNodeList(), and buildBndElemList().
Definition: MooseMesh.C:629
libMesh::NodeRange * getActiveNodeRange()
Definition: MooseMesh.C:1290
libMesh::StoredRange< MooseMesh::const_bnd_elem_iterator, const BndElement * > * getBoundaryElementRange()
Definition: MooseMesh.C:1341
std::unique_ptr< libMesh::ConstNodeRange > _local_node_range
Definition: MooseMesh.h:1529
libMesh::StoredRange< MooseMesh::const_bnd_node_iterator, const BndNode * > * getBoundaryNodeRange()
Definition: MooseMesh.C:1327
std::unique_ptr< libMesh::StoredRange< MooseMesh::const_bnd_node_iterator, const BndNode * > > _bnd_node_range
Definition: MooseMesh.h:1531
std::unique_ptr< SemiLocalNodeRange > _active_semilocal_node_range
Definition: MooseMesh.h:1527

◆ meshNodesetIds()

const std::set< BoundaryID > & MooseMesh::meshNodesetIds ( ) const

Returns a read-only reference to the set of nodesets currently present in the Mesh.

Definition at line 3229 of file MooseMesh.C.

Referenced by GeometricSearchData::GeometricSearchData(), and BoundaryRestrictable::initializeBoundaryRestrictable().

3230 {
3231  return _mesh_nodeset_ids;
3232 }
std::set< BoundaryID > _mesh_nodeset_ids
Definition: MooseMesh.h:1557

◆ meshSidesetIds()

const std::set< BoundaryID > & MooseMesh::meshSidesetIds ( ) const

Returns a read-only reference to the set of sidesets currently present in the Mesh.

Definition at line 3223 of file MooseMesh.C.

Referenced by DGKernelBase::DGKernelBase(), and BoundaryRestrictable::initializeBoundaryRestrictable().

3224 {
3225  return _mesh_sideset_ids;
3226 }
std::set< BoundaryID > _mesh_sideset_ids
Definition: MooseMesh.h:1556

◆ meshSubdomains()

const std::set< SubdomainID > & MooseMesh::meshSubdomains ( ) const

◆ messagePrefix()

std::string MooseBase::messagePrefix ( const bool  hit_prefix = true) const
inlineinherited
Returns
A prefix to be used in messages that contain the input file location associated with this object (if any) and the name and type of the object.

Definition at line 256 of file MooseBase.h.

Referenced by MooseBase::callMooseError(), MooseBase::errorPrefix(), MooseBase::mooseDeprecated(), MooseBase::mooseInfo(), and MooseBase::mooseWarning().

257  {
258  return messagePrefix(_pars, hit_prefix);
259  }
const InputParameters & _pars
The object&#39;s parameters.
Definition: MooseBase.h:366
std::string messagePrefix(const bool hit_prefix=true) const
Definition: MooseBase.h:256

◆ minElementID()

dof_id_type MooseMesh::minElementID ( unsigned int  elem_id_index) const
inline

Return the minimum element ID for an extra element integer with its accessing index.

Definition at line 1135 of file MooseMesh.h.

1135 { return _min_ids[elem_id_index]; }
std::vector< dof_id_type > _min_ids
Minimum integer ID for each extra element integer.
Definition: MooseMesh.h:1875

◆ minPeriodicDistance()

Real MooseMesh::minPeriodicDistance ( unsigned int  nonlinear_var_num,
Point  p,
Point  q 
) const

This function returns the distance between two points on the mesh taking into account periodicity for the given variable number.

Parameters
nonlinear_var_num- The nonlinear variable number
p,q- The points for which to compute a minimum distance
Returns
Real - The L2 distance between p and q

Definition at line 2325 of file MooseMesh.C.

2326 {
2327  return minPeriodicVector(nonlinear_var_num, p, q).norm();
2328 }
auto norm() const -> decltype(std::norm(Real()))
RealVectorValue minPeriodicVector(unsigned int nonlinear_var_num, Point p, Point q) const
This function returns the minimum vector between two points on the mesh taking into account periodici...
Definition: MooseMesh.C:2300

◆ minPeriodicVector()

RealVectorValue MooseMesh::minPeriodicVector ( unsigned int  nonlinear_var_num,
Point  p,
Point  q 
) const

This function returns the minimum vector between two points on the mesh taking into account periodicity for the given variable number.

Parameters
nonlinear_var_num- The nonlinear variable number
p,q- The points between which to compute a minimum vector
Returns
RealVectorValue - The vector pointing from p to q

Definition at line 2300 of file MooseMesh.C.

Referenced by minPeriodicDistance().

2301 {
2302  for (unsigned int i = 0; i < dimension(); ++i)
2303  {
2304  // check to see if we're closer in real or periodic space in x, y, and z
2305  if (isTranslatedPeriodic(nonlinear_var_num, i))
2306  {
2307  // Need to test order before differencing
2308  if (p(i) > q(i))
2309  {
2310  if (p(i) - q(i) > _half_range(i))
2311  p(i) -= _half_range(i) * 2;
2312  }
2313  else
2314  {
2315  if (q(i) - p(i) > _half_range(i))
2316  p(i) += _half_range(i) * 2;
2317  }
2318  }
2319  }
2320 
2321  return q - p;
2322 }
RealVectorValue _half_range
A convenience vector used to hold values in each dimension representing half of the range...
Definition: MooseMesh.h:1662
bool isTranslatedPeriodic(unsigned int nonlinear_var_num, unsigned int component) const
Returns whether this generated mesh is periodic in the given dimension for the given variable...
Definition: MooseMesh.C:2289
virtual unsigned int dimension() const
Returns MeshBase::mesh_dimension(), (not MeshBase::spatial_dimension()!) of the underlying libMesh me...
Definition: MooseMesh.C:2968

◆ mooseDeprecated()

template<typename... Args>
void MooseBase::mooseDeprecated ( Args &&...  args) const
inlineinherited

Definition at line 314 of file MooseBase.h.

Referenced by FEProblemBase::addAuxArrayVariable(), FEProblemBase::addAuxScalarVariable(), FEProblemBase::addAuxVariable(), FEProblemBase::advanceMultiApps(), MultiApp::appProblem(), buildSideList(), ChangeOverTimestepPostprocessor::ChangeOverTimestepPostprocessor(), AddVariableAction::determineType(), EigenProblem::EigenProblem(), Eigenvalue::Eigenvalue(), elem(), UserForcingFunction::f(), FaceFaceConstraint::FaceFaceConstraint(), FunctionDT::FunctionDT(), RandomICBase::generateRandom(), getBoundariesToElems(), DataFileInterface::getDataFileName(), DataFileInterface::getDataFileNameByName(), Control::getExecuteOptions(), FEProblemBase::getNonlinearSystem(), MooseApp::getRecoverFileBase(), FEProblemBase::getUserObjects(), FEProblemBase::hasPostprocessor(), MooseApp::hasRecoverFileBase(), MatDiffusionBase< Real >::MatDiffusionBase(), MultiAppNearestNodeTransfer::MultiAppNearestNodeTransfer(), MultiAppShapeEvaluationTransfer::MultiAppShapeEvaluationTransfer(), MultiAppUserObjectTransfer::MultiAppUserObjectTransfer(), NodalScalarKernel::NodalScalarKernel(), node(), FixedPointSolve::numPicardIts(), RelationshipManager::operator>=(), PercentChangePostprocessor::PercentChangePostprocessor(), ReferenceResidualConvergence::ReferenceResidualConvergence(), Residual::Residual(), setBoundaryToNormalMap(), Exodus::setOutputDimension(), MooseApp::setupOptions(), TagVectorAux::TagVectorAux(), UserForcingFunction::UserForcingFunction(), and VariableResidual::VariableResidual().

315  {
317  _console, false, true, messagePrefix(true), std::forward<Args>(args)...);
318  }
void mooseDeprecatedStream(S &oss, const bool expired, const bool print_title, Args &&... args)
Definition: MooseError.h:265
const ConsoleStream _console
An instance of helper class to write streams to the Console objects.
std::string messagePrefix(const bool hit_prefix=true) const
Definition: MooseBase.h:256

◆ mooseDocumentedError()

template<typename... Args>
void MooseBase::mooseDocumentedError ( const std::string &  repo_name,
const unsigned int  issue_num,
Args &&...  args 
) const
inlineinherited

Definition at line 277 of file MooseBase.h.

Referenced by ArrayDGLowerDKernel::ArrayDGLowerDKernel(), ArrayHFEMDirichletBC::ArrayHFEMDirichletBC(), ArrayLowerDIntegratedBC::ArrayLowerDIntegratedBC(), DGLowerDKernel::DGLowerDKernel(), HFEMDirichletBC::HFEMDirichletBC(), and LowerDIntegratedBC::LowerDIntegratedBC().

280  {
282  repo_name, issue_num, argumentsToString(std::forward<Args>(args)...)),
283  /* with_prefix = */ true);
284  }
void callMooseError(std::string msg, const bool with_prefix, const hit::Node *node=nullptr) const
External method for calling moose error with added object context.
Definition: MooseBase.C:105
std::string formatMooseDocumentedError(const std::string &repo_name, const unsigned int issue_num, const std::string &msg)
Formats a documented error.
Definition: MooseError.C:128

◆ mooseError()

template<typename... Args>
void MooseBase::mooseError ( Args &&...  args) const
inlineinherited

Emits an error prefixed with object name and type and optionally a file path to the top-level block parameter if available.

Definition at line 271 of file MooseBase.h.

Referenced by CopyMeshPartitioner::_do_partition(), HierarchicalGridPartitioner::_do_partition(), GridPartitioner::_do_partition(), PetscExternalPartitioner::_do_partition(), MultiAppGeneralFieldTransfer::acceptPointInOriginMesh(), AddBoundsVectorsAction::act(), AddICAction::act(), SetupMeshCompleteAction::act(), AddVectorPostprocessorAction::act(), CheckFVBCAction::act(), InitProblemAction::act(), AutoCheckpointAction::act(), CreateExecutionerAction::act(), AddMeshGeneratorAction::act(), CheckIntegrityAction::act(), AddFVICAction::act(), CreateProblemAction::act(), CreateProblemDefaultAction::act(), CombineComponentsMeshes::act(), SetupMeshAction::act(), SplitMeshAction::act(), AdaptivityAction::act(), ChainControlSetupAction::act(), AddTimeStepperAction::act(), DeprecatedBlockAction::act(), SetupPredictorAction::act(), SetupTimeStepperAction::act(), CreateDisplacedProblemAction::act(), MaterialDerivativeTestAction::act(), SetAdaptivityOptionsAction::act(), MaterialOutputAction::act(), AddMFEMSubMeshAction::act(), AddPeriodicBCAction::act(), CommonOutputAction::act(), Action::Action(), FEProblemBase::adaptMesh(), MooseVariableFV< Real >::adCurlSln(), MooseVariableFV< Real >::adCurlSlnNeighbor(), AddActionComponentAction::AddActionComponentAction(), MFEMProblem::addBoundaryCondition(), FEProblemBase::addBoundaryCondition(), DiffusionCG::addBoundaryConditionsFromComponents(), PhysicsComponentInterface::addBoundaryConditionsFromComponents(), FEProblemBase::addConstraint(), FEProblemBase::addDamper(), FEProblemBase::addDGKernel(), FEProblemBase::addDiracKernel(), DistributedRectilinearMeshGenerator::addElement(), MooseApp::addExecutor(), FEProblemBase::addFunction(), SubProblem::addFunctor(), FEProblemBase::addFVInitialCondition(), ADDGKernel::ADDGKernel(), FEProblemBase::addHDGKernel(), FEProblemBase::addInitialCondition(), PhysicsComponentInterface::addInitialConditionsFromComponents(), FEProblemBase::addInterfaceKernel(), MFEMProblem::addKernel(), FEProblemBase::addKernel(), FEProblem::addLineSearch(), FEProblemBase::addLineSearch(), MFEMProblem::addMaterial(), MeshGenerator::addMeshSubgenerator(), MFEMProblem::addMFEMFESpaceFromMOOSEVariable(), FEProblemBase::addObjectParamsHelper(), FEProblemBase::addOutput(), SubProblem::addPiecewiseByBlockLambdaFunctor(), DiracKernelBase::addPoint(), DistributedRectilinearMeshGenerator::addPoint(), DiracKernelBase::addPointWithValidId(), FEProblemBase::addPostprocessor(), FEProblemBase::addPredictor(), CreateDisplacedProblemAction::addProxyRelationshipManagers(), addQuadratureNode(), Action::addRelationshipManager(), FEProblemBase::addReporter(), FEProblemBase::addScalarKernel(), AddVariableAction::addVariable(), FEProblemBase::addVectorPostprocessor(), SubProblem::addVectorTag(), MooseLinearVariableFV< Real >::adError(), ADInterfaceKernelTempl< T >::ADInterfaceKernelTempl(), ADPiecewiseLinearInterpolationMaterial::ADPiecewiseLinearInterpolationMaterial(), MooseVariableScalar::adUDot(), Output::advancedExecuteOn(), AdvectiveFluxAux::AdvectiveFluxAux(), MooseVariableBase::allDofIndices(), NEML2ModelExecutor::applyPredictor(), MooseApp::appNameToLibName(), MultiApp::appPostprocessorValue(), MultiApp::appProblem(), MultiApp::appProblemBase(), MultiApp::appUserObjectBase(), ArrayConstantIC::ArrayConstantIC(), ArrayDGKernel::ArrayDGKernel(), ArrayDiffusion::ArrayDiffusion(), ArrayFunctionIC::ArrayFunctionIC(), ArrayReaction::ArrayReaction(), ArrayTimeDerivative::ArrayTimeDerivative(), MooseApp::attachRelationshipManagers(), AddPeriodicBCAction::autoTranslationBoundaries(), AuxKernelTempl< Real >::AuxKernelTempl(), Function::average(), Axisymmetric2D3DSolutionFunction::Axisymmetric2D3DSolutionFunction(), BatchMeshGeneratorAction::BatchMeshGeneratorAction(), BicubicSplineFunction::BicubicSplineFunction(), BlockDeletionGenerator::BlockDeletionGenerator(), Boundary2DDelaunayGenerator::Boundary2DDelaunayGenerator(), BoundingValueElementDamper::BoundingValueElementDamper(), BoundingValueNodalDamper::BoundingValueNodalDamper(), BreakMeshByBlockGeneratorBase::BreakMeshByBlockGeneratorBase(), buildCoarseningMap(), MultiApp::buildComm(), DistributedRectilinearMeshGenerator::buildCube(), TimedSubdomainModifier::buildFromFile(), PiecewiseTabularBase::buildFromFile(), PiecewiseTabularBase::buildFromJSON(), TimedSubdomainModifier::buildFromParameters(), PiecewiseTabularBase::buildFromXY(), PiecewiseLinearBase::buildInterpolation(), buildLowerDMesh(), TiledMesh::buildMesh(), GeneratedMesh::buildMesh(), SpiralAnnularMesh::buildMesh(), MeshGeneratorMesh::buildMesh(), ImageMeshGenerator::buildMesh3D(), ImageMesh::buildMesh3D(), buildRefinementMap(), MaterialBase::buildRequiredMaterials(), buildSideList(), buildTypedMesh(), cacheFaceInfoVariableOwnership(), CartesianGridDivision::CartesianGridDivision(), CartesianMeshGenerator::CartesianMeshGenerator(), ChangeOverFixedPointPostprocessor::ChangeOverFixedPointPostprocessor(), ChangeOverTimePostprocessor::ChangeOverTimePostprocessor(), EigenExecutionerBase::chebyshev(), SubProblem::checkBlockMatProps(), PhysicsBase::checkBlockRestrictionIdentical(), ComponentBoundaryConditionInterface::checkBoundaryConditionsAllRequested(), SubProblem::checkBoundaryMatProps(), PhysicsBase::checkComponentType(), IterationCountConvergence::checkConvergence(), checkCoordinateSystems(), DiffusionLHDGAssemblyHelper::checkCoupling(), FEProblemBase::checkDependMaterialsHelper(), FEProblemBase::checkDisplacementOrders(), FEProblemBase::checkDuplicatePostprocessorVariableNames(), DefaultConvergenceBase::checkDuplicateSetSharedExecutionerParams(), checkDuplicateSubdomainNames(), FEProblemBase::checkExceptionAndStopSolve(), NEML2ModelExecutor::checkExecutionStage(), MaterialBase::checkExecutionStage(), MeshGenerator::checkGetMesh(), ReporterTransferInterface::checkHasReporterValue(), FEProblemBase::checkICRestartError(), Steady::checkIntegrity(), EigenExecutionerBase::checkIntegrity(), Eigenvalue::checkIntegrity(), DefaultSteadyStateConvergence::checkIterationType(), DefaultMultiAppFixedPointConvergence::checkIterationType(), DefaultNonlinearConvergence::checkIterationType(), ExplicitTimeIntegrator::checkLinearConvergence(), MooseApp::checkMetaDataIntegrity(), MeshDiagnosticsGenerator::checkNonConformalMeshFromAdaptivity(), MeshDiagnosticsGenerator::checkNonMatchingEdges(), PostprocessorInterface::checkParam(), FEProblemBase::checkProblemIntegrity(), Sampler::checkReinitStatus(), MooseApp::checkReservedCapability(), MultiAppGeneralFieldNearestLocationTransfer::checkRestrictionsForSource(), MultiAppPostprocessorToAuxScalarTransfer::checkSiblingsTransferSupported(), MultiAppScalarToAuxScalarTransfer::checkSiblingsTransferSupported(), MultiAppPostprocessorTransfer::checkSiblingsTransferSupported(), MultiAppReporterTransfer::checkSiblingsTransferSupported(), MultiAppMFEMCopyTransfer::checkSiblingsTransferSupported(), MultiAppCopyTransfer::checkSiblingsTransferSupported(), MultiAppTransfer::checkSiblingsTransferSupported(), MaterialBase::checkStatefulSanity(), AddDefaultConvergenceAction::checkUnusedMultiAppFixedPointConvergenceParameters(), AddDefaultConvergenceAction::checkUnusedNonlinearConvergenceParameters(), AddDefaultConvergenceAction::checkUnusedSteadyStateConvergenceParameters(), FEProblemBase::checkUserObjects(), Moose::PetscSupport::checkUserProvidedPetscOption(), DomainUserObject::checkVariable(), MultiAppTransfer::checkVariable(), MeshDiagnosticsGenerator::checkWatertightNodesets(), MeshDiagnosticsGenerator::checkWatertightSidesets(), LibmeshPartitioner::clone(), clone(), CombinerGenerator::CombinerGenerator(), ComparisonPostprocessor::comparisonIsTrue(), MooseVariableFieldBase::componentName(), CompositeFunction::CompositeFunction(), ElementH1ErrorFunctionAux::compute(), NodalPatchRecovery::compute(), FEProblemBase::computeBounds(), VariableCondensationPreconditioner::computeDInverseDiag(), CompositionDT::computeDT(), ArrayDGKernel::computeElemNeighJacobian(), ArrayDGKernel::computeElemNeighResidual(), InternalSideIntegralPostprocessor::computeFaceInfoIntegral(), SideIntegralPostprocessor::computeFaceInfoIntegral(), MooseVariableFieldBase::computeFaceValues(), TimeSequenceStepperBase::computeFailedDT(), IterationAdaptiveDT::computeFailedDT(), TimeStepper::computeFailedDT(), computeFiniteVolumeCoords(), HistogramVectorPostprocessor::computeHistogram(), ArrayKernel::computeJacobian(), ArrayIntegratedBC::computeJacobian(), FVFluxKernel::computeJacobian(), NodalConstraint::computeJacobian(), FEProblemBase::computeJacobianTags(), LowerDIntegratedBC::computeLowerDOffDiagJacobian(), ArrayLowerDIntegratedBC::computeLowerDOffDiagJacobian(), EigenProblem::computeMatricesTags(), ArrayDGKernel::computeOffDiagElemNeighJacobian(), ArrayKernel::computeOffDiagJacobian(), ArrayIntegratedBC::computeOffDiagJacobian(), FVElementalKernel::computeOffDiagJacobian(), Moose::Kokkos::ResidualObject::computeOffDiagJacobian(), MortarScalarBase::computeOffDiagJacobianScalar(), DGLowerDKernel::computeOffDiagLowerDJacobian(), ArrayDGLowerDKernel::computeOffDiagLowerDJacobian(), MaterialBase::computeProperties(), SideFVFluxBCIntegral::computeQpIntegral(), ScalarKernel::computeQpJacobian(), CoupledTiedValueConstraint::computeQpJacobian(), TiedValueConstraint::computeQpJacobian(), NodalEqualValueConstraint::computeQpJacobian(), LinearNodalConstraint::computeQpJacobian(), EqualValueBoundaryConstraint::computeQpJacobian(), NodeElemConstraint::computeQpJacobian(), CoupledTiedValueConstraint::computeQpOffDiagJacobian(), ScalarKernel::computeQpResidual(), MassMatrix::computeQpResidual(), HDGKernel::computeQpResidual(), DiffusionLHDGDirichletBC::computeQpResidual(), NodalEqualValueConstraint::computeQpResidual(), DiffusionLHDGPrescribedGradientBC::computeQpResidual(), IPHDGBC::computeQpResidual(), KernelValue::computeQpResidual(), TorchScriptMaterial::computeQpValues(), InterfaceQpValueUserObject::computeRealValue(), ArrayKernel::computeResidual(), ArrayIntegratedBC::computeResidual(), FVFluxBC::computeResidual(), FVFluxKernel::computeResidual(), NodalConstraint::computeResidual(), FVFluxKernel::computeResidualAndJacobian(), ResidualObject::computeResidualAndJacobian(), FEProblemBase::computeResidualAndJacobian(), HDGKernel::computeResidualAndJacobianOnSide(), FEProblemBase::computeResidualInternal(), FEProblemBase::computeResidualTag(), FEProblemBase::computeResidualTags(), FEProblemBase::computeResidualType(), KernelScalarBase::computeScalarOffDiagJacobian(), ADKernelScalarBase::computeScalarQpResidual(), ADMortarScalarBase::computeScalarQpResidual(), MortarScalarBase::computeScalarQpResidual(), KernelScalarBase::computeScalarQpResidual(), TimeStepper::computeStep(), ActuallyExplicitEuler::computeTimeDerivatives(), ExplicitEuler::computeTimeDerivatives(), ImplicitEuler::computeTimeDerivatives(), BDF2::computeTimeDerivatives(), NewmarkBeta::computeTimeDerivatives(), CentralDifference::computeTimeDerivatives(), CrankNicolson::computeTimeDerivatives(), LStableDirk2::computeTimeDerivatives(), LStableDirk3::computeTimeDerivatives(), ImplicitMidpoint::computeTimeDerivatives(), ExplicitTVDRK2::computeTimeDerivatives(), LStableDirk4::computeTimeDerivatives(), AStableDirk4::computeTimeDerivatives(), ExplicitRK2::computeTimeDerivatives(), MultiAppGeometricInterpolationTransfer::computeTransformation(), BuildArrayVariableAux::computeValue(), TagVectorArrayVariableAux::computeValue(), NearestNodeValueAux::computeValue(), ProjectionAux::computeValue(), PenetrationAux::computeValue(), ConcentricCircleMesh::ConcentricCircleMesh(), ConditionalEnableControl::ConditionalEnableControl(), ConservativeAdvectionBCTempl< false >::ConservativeAdvectionBCTempl(), TimeStepper::constrainStep(), LibtorchNeuralNetControl::controlNeuralNet(), TransientBase::convergedToSteadyState(), ParsedConvergence::convertRealToBool(), MooseApp::copyInputs(), CopyMeshPartitioner::CopyMeshPartitioner(), CoupledForceNodalKernel::CoupledForceNodalKernel(), MultiApp::createApp(), MooseApp::createExecutors(), AddVariableAction::createInitialConditionAction(), MooseApp::createRMFromTemplateAndInit(), Function::curl(), MooseVariableFV< Real >::curlPhi(), CutMeshByPlaneGenerator::CutMeshByPlaneGenerator(), SidesetInfoVectorPostprocessor::dataHelper(), ReporterTransferInterface::declareClone(), Moose::Kokkos::MaterialBase::declareKokkosPropertyByName(), MeshGenerator::declareMeshProperty(), ReporterTransferInterface::declareVectorClone(), DefaultSteadyStateConvergence::DefaultSteadyStateConvergence(), FunctorRelationshipManager::delete_remote_elements(), deleteRemoteElements(), BicubicSplineFunction::derivative(), DerivativeSumMaterialTempl< is_ad >::DerivativeSumMaterialTempl(), detectPairedSidesets(), MooseApp::determineLibtorchDeviceType(), FEProblemBase::determineSolverSystem(), DGKernel::DGKernel(), MeshDiagnosticsGenerator::diagnosticsLog(), DistributedPositions::DistributedPositions(), Function::div(), FunctorBinnedValuesDivision::divisionIndex(), MooseVariableFV< Real >::divPhi(), FunctorRelationshipManager::dofmap_reinit(), EigenProblem::doFreeNonlinearPowerIterations(), FEProblemBase::duplicateVariableCheck(), MooseApp::dynamicAllRegistration(), MooseApp::dynamicAppRegistration(), EigenProblem::EigenProblem(), Eigenvalue::Eigenvalue(), Eigenvalues::Eigenvalues(), ElementalVariableValue::ElementalVariableValue(), ElementGroupCentroidPositions::ElementGroupCentroidPositions(), ElementIntegerAux::ElementIntegerAux(), ElementMaterialSampler::ElementMaterialSampler(), ElementQualityAux::ElementQualityAux(), ElementUOAux::ElementUOAux(), ExtraIDIntegralVectorPostprocessor::elementValue(), DistributedRectilinearMeshGenerator::elemId(), ProjectionAux::elemOnNodeVariableIsDefinedOn(), EigenKernel::enabled(), MooseApp::errorCheck(), errorIfDistributedMesh(), MultiAppTransfer::errorIfObjectExecutesOnTransferInSourceApp(), SideIntegralPostprocessor::errorNoFaceInfo(), SideIntegralFunctorPostprocessorTempl< false >::errorNoFaceInfo(), SolutionUserObjectBase::evalMeshFunction(), SolutionUserObjectBase::evalMeshFunctionGradient(), SolutionUserObjectBase::evalMultiValuedMeshFunction(), SolutionUserObjectBase::evalMultiValuedMeshFunctionGradient(), FixedPointSolve::examineFixedPointConvergence(), MultiAppGeneralFieldTransfer::examineReceivedValueConflicts(), RealToBoolChainControl::execute(), DiscreteElementUserObject::execute(), RestartableDataReporter::execute(), MultiAppScalarToAuxScalarTransfer::execute(), MultiAppPostprocessorToAuxScalarTransfer::execute(), PositionsFunctorValueSampler::execute(), NodalValueSampler::execute(), MultiAppPostprocessorInterpolationTransfer::execute(), MultiAppPostprocessorTransfer::execute(), ElementQualityChecker::execute(), GreaterThanLessThanPostprocessor::execute(), PointValue::execute(), MultiAppVariableValueSampleTransfer::execute(), MultiAppVariableValueSamplePostprocessorTransfer::execute(), FindValueOnLine::execute(), MultiAppNearestNodeTransfer::execute(), MultiAppMFEMCopyTransfer::execute(), MultiAppCopyTransfer::execute(), MultiAppUserObjectTransfer::execute(), MultiAppGeometricInterpolationTransfer::execute(), InterfaceQpUserObjectBase::execute(), WebServerControl::execute(), TransientBase::execute(), LeastSquaresFit::execute(), VectorPostprocessorComparison::execute(), LeastSquaresFitHistory::execute(), Eigenvalue::execute(), TimeExtremeValue::execute(), DomainUserObject::execute(), FEProblemBase::execute(), FEProblemBase::executeControls(), MooseApp::executeExecutioner(), MultiAppVectorPostprocessorTransfer::executeFromMultiapp(), MultiAppVectorPostprocessorTransfer::executeToMultiapp(), Exodus::Exodus(), ExplicitSSPRungeKutta::ExplicitSSPRungeKutta(), MultiAppGeneralFieldTransfer::extractOutgoingPoints(), NEML2ModelExecutor::extractOutputs(), ExtraIDIntegralVectorPostprocessor::ExtraIDIntegralVectorPostprocessor(), FEProblemSolve::FEProblemSolve(), FileOutput::FileOutput(), NEML2ModelExecutor::fillInputs(), QuadraturePointMultiApp::fillPositions(), CentroidMultiApp::fillPositions(), MultiApp::fillPositions(), MultiAppGeometricInterpolationTransfer::fillSourceInterpolationPoints(), VerifyNodalUniqueID::finalize(), VerifyElementUniqueID::finalize(), DiscreteElementUserObject::finalize(), ElementQualityChecker::finalize(), MemoryUsage::finalize(), PointSamplerBase::finalize(), DiscreteVariableResidualNorm::finalize(), NearestPointAverage::finalize(), NearestPointIntegralVariablePostprocessor::finalize(), MooseApp::finalizeRestore(), Transfer::find_sys(), BreakMeshByBlockGeneratorBase::findFreeBoundaryId(), FunctionDT::FunctionDT(), FunctionMaterialBase< is_ad >::FunctionMaterialBase(), FunctionScalarAux::FunctionScalarAux(), FunctionScalarIC::FunctionScalarIC(), FunctorSmootherTempl< T >::FunctorSmootherTempl(), FVInitialConditionTempl< T >::FVInitialConditionTempl(), FVMassMatrix::FVMassMatrix(), FVMatAdvection::FVMatAdvection(), FVScalarLagrangeMultiplierInterface::FVScalarLagrangeMultiplierInterface(), GapValueAux::GapValueAux(), WorkBalance::gather(), ElementSubdomainModifierBase::gatherPatchElements(), Boundary2DDelaunayGenerator::General2DDelaunay(), ElementOrderConversionGenerator::generate(), PlaneIDMeshGenerator::generate(), RenameBlockGenerator::generate(), RenameBoundaryGenerator::generate(), SideSetsFromNormalsGenerator::generate(), SmoothMeshGenerator::generate(), SubdomainPerElementGenerator::generate(), TiledMeshGenerator::generate(), LowerDBlockFromSidesetGenerator::generate(), ExtraNodesetGenerator::generate(), FileMeshGenerator::generate(), MoveNodeGenerator::generate(), SideSetsFromPointsGenerator::generate(), StitchMeshGenerator::generate(), FlipSidesetGenerator::generate(), GeneratedMeshGenerator::generate(), Boundary2DDelaunayGenerator::generate(), BreakMeshByBlockGenerator::generate(), CoarsenBlockGenerator::generate(), MeshDiagnosticsGenerator::generate(), MeshRepairGenerator::generate(), SideSetsFromBoundingBoxGenerator::generate(), StackGenerator::generate(), XYZDelaunayGenerator::generate(), CombinerGenerator::generate(), AllSideSetsByNormalsGenerator::generate(), AdvancedExtruderGenerator::generate(), MeshCollectionGenerator::generate(), MeshExtruderGenerator::generate(), ParsedGenerateNodeset::generate(), SpiralAnnularMeshGenerator::generate(), XYDelaunayGenerator::generate(), XYMeshLineCutter::generate(), CutMeshByLevelSetGeneratorBase::generate(), SubdomainBoundingBoxGenerator::generate(), PatternedMeshGenerator::generate(), DistributedRectilinearMeshGenerator::generate(), BoundingBoxNodeSetGenerator::generate(), MeshGenerator::generateData(), GeneratedMesh::GeneratedMesh(), GeneratedMeshGenerator::GeneratedMeshGenerator(), MeshGenerator::generateInternal(), CircularBoundaryCorrectionGenerator::generateRadialCorrectionFactor(), RandomICBase::generateRandom(), GenericConstantMaterialTempl< is_ad >::GenericConstantMaterialTempl(), GenericConstantVectorMaterialTempl< is_ad >::GenericConstantVectorMaterialTempl(), GenericFunctionMaterialTempl< is_ad >::GenericFunctionMaterialTempl(), GenericFunctionVectorMaterialTempl< is_ad >::GenericFunctionVectorMaterialTempl(), GenericFunctorGradientMaterialTempl< is_ad >::GenericFunctorGradientMaterialTempl(), GenericFunctorMaterialTempl< is_ad >::GenericFunctorMaterialTempl(), GenericFunctorTimeDerivativeMaterialTempl< is_ad >::GenericFunctorTimeDerivativeMaterialTempl(), GenericVectorFunctorMaterialTempl< is_ad >::GenericVectorFunctorMaterialTempl(), DisplacedProblem::getActualFieldVariable(), FEProblemBase::getActualFieldVariable(), DisplacedProblem::getArrayVariable(), FEProblemBase::getArrayVariable(), getAxisymmetricRadialCoord(), MFEMFESpace::getBasis(), NEML2BatchIndexGenerator::getBatchIndex(), getBlockConnectedBlocks(), VariableOldValueBounds::getBound(), getBoundaryID(), MultiApp::getBoundingBox(), ChainControl::getChainControlDataByName(), getCoarseningMap(), NodalPatchRecoveryBase::getCoefficients(), MultiApp::getCommandLineArgs(), MooseVariableBase::getContinuity(), Control::getControllableParameterByName(), FEProblemBase::getConvergence(), getCoordSystem(), PhysicsBase::getCoupledPhysics(), PropertyReadFile::getData(), DataFileInterface::getDataFilePath(), TransfiniteMeshGenerator::getDiscreteEdge(), FEProblemBase::getDistribution(), MooseVariableBase::getDofIndices(), VariableCondensationPreconditioner::getDofToCondense(), TransfiniteMeshGenerator::getEdge(), GhostingUserObject::getElementalValue(), ElementUOProvider::getElementalValueLong(), ElementUOProvider::getElementalValueReal(), PropertyReadFile::getElementData(), getElementIDIndex(), Material::getElementIDNeighbor(), Material::getElementIDNeighborByName(), getElemIDMapping(), getElemIDsOnBlocks(), MultiAppFieldTransfer::getEquationSystem(), MultiApp::getExecutioner(), MooseApp::getExecutor(), MFEMVectorFESpace::getFECName(), MultiAppTransfer::getFromMultiApp(), MultiAppTransfer::getFromMultiAppInfo(), FEProblemBase::getFunction(), SubProblem::getFunctor(), FEProblemBase::getFVMatsAndDependencies(), getGeneralAxisymmetricCoordAxis(), DistributedRectilinearMeshGenerator::getGhostNeighbors(), DistributedRectilinearMeshGenerator::getIndices(), FEProblemBase::getLinearConvergenceNames(), SolutionUserObjectBase::getLocalVarIndex(), Material::getMaterialByName(), FEProblemBase::getMaterialData(), FEProblemBase::getMaterialPropertyStorageConsumers(), SubProblem::getMatrixTagID(), GeneratedMesh::getMaxInDimension(), AnnularMesh::getMaxInDimension(), FEProblemBase::getMaxQps(), FEProblemBase::getMeshDivision(), MeshGenerator::getMeshGeneratorNameFromParam(), MeshGenerator::getMeshGeneratorNamesFromParam(), AnnularMesh::getMinInDimension(), GeneratedMesh::getMinInDimension(), MultiAppTransfer::getMultiApp(), FEProblemBase::getMultiAppFixedPointConvergenceName(), DistributedRectilinearMeshGenerator::getNeighbors(), Times::getNextTime(), getNodeBlockIds(), PropertyReadFile::getNodeData(), getNodeList(), FEProblemBase::getNonlinearConvergenceNames(), EigenProblem::getNonlinearEigenSystem(), FEProblemBase::getNonlinearSystem(), NEML2ModelExecutor::getOutput(), NEML2ModelExecutor::getOutputDerivative(), NEML2ModelExecutor::getOutputParameterDerivative(), getPairedBoundaryMapping(), MaterialOutputAction::getParams(), ImageMeshGenerator::GetPixelInfo(), ImageMesh::GetPixelInfo(), PlaneIDMeshGenerator::getPlaneID(), Positions::getPosition(), Positions::getPositions(), FEProblemBase::getPositionsObject(), Positions::getPositionsVector2D(), Positions::getPositionsVector3D(), Positions::getPositionsVector4D(), PostprocessorInterface::getPostprocessorValueByNameInternal(), Times::getPreviousTime(), ComponentMaterialPropertyInterface::getPropertyValue(), InterfaceQpUserObjectBase::getQpValue(), getRefinementMap(), MooseBase::getRenamedParam(), ReporterInterface::getReporterContextBaseByName(), ReporterInterface::getReporterName(), Reporter::getReporterValueName(), MooseApp::getRestartableDataMap(), MooseApp::getRestartableDataMapName(), MooseApp::getRestartableMetaData(), MooseApp::getRMClone(), FEProblemBase::getSampler(), WebServerControl::getScalarJSONValue(), DisplacedProblem::getScalarVariable(), FEProblemBase::getScalarVariable(), MooseObject::getSharedPtr(), InterfaceQpUserObjectBase::getSideAverageValue(), PhysicsBase::getSolverSystem(), DisplacedProblem::getStandardVariable(), FEProblemBase::getStandardVariable(), FEProblemBase::getSteadyStateConvergenceName(), getSubdomainBoundaryIds(), TimedSubdomainModifier::getSubdomainIDAndCheck(), DisplacedProblem::getSystem(), FEProblemBase::getSystem(), FEProblemBase::getSystemBase(), Times::getTimeAtIndex(), FEProblemBase::getTimeFromStateArg(), TransientBase::getTimeIntegratorNames(), Times::getTimes(), MultiAppTransfer::getToMultiApp(), MultiAppTransfer::getToMultiAppInfo(), getUniqueCoordSystem(), FEProblemBase::getUserObject(), FEProblemBase::getUserObjectBase(), UserObjectInterface::getUserObjectBaseByName(), UserObjectInterface::getUserObjectName(), NumRelationshipManagers::getValue(), VectorPostprocessorComponent::getValue(), Residual::getValue(), SideAverageValue::getValue(), JSONFileReader::getValue(), LineValueSampler::getValue(), FindValueOnLine::getValueAtPoint(), SubProblem::getVariableHelper(), JSONFileReader::getVector(), VectorPostprocessorInterface::getVectorPostprocessorName(), SubProblem::getVectorTag(), SubProblem::getVectorTagID(), DisplacedProblem::getVectorVariable(), FEProblemBase::getVectorVariable(), GhostingFromUOAux::GhostingFromUOAux(), MultiApp::globalAppToLocal(), MooseParsedVectorFunction::gradient(), Function::gradient(), FEProblemBase::handleException(), Terminator::handleMessage(), MooseVariableBase::hasDoFsOnNodes(), PostprocessorInterface::hasPostprocessor(), PostprocessorInterface::hasPostprocessorByName(), ReporterInterface::hasReporterValue(), ReporterInterface::hasReporterValueByName(), VectorPostprocessorInterface::hasVectorPostprocessor(), VectorPostprocessorInterface::hasVectorPostprocessorByName(), HDGKernel::HDGKernel(), TransientBase::incrementStepOrReject(), FixedPointIterationAdaptiveDT::init(), CrankNicolson::init(), CSVTimeSequenceStepper::init(), EigenExecutionerBase::init(), ExplicitTimeIntegrator::init(), TransientBase::init(), FEProblem::init(), AddAuxVariableAction::init(), IterationAdaptiveDT::init(), Eigenvalue::init(), AddVariableAction::init(), init(), Sampler::init(), FEProblemBase::init(), MultiApp::init(), FEProblemBase::initialAdaptMesh(), NestedDivision::initialize(), DistributedPositions::initialize(), ReporterPositions::initialize(), TransformedPositions::initialize(), ElementGroupCentroidPositions::initialize(), ReporterTimes::initialize(), FunctorPositions::initialize(), FunctorTimes::initialize(), ParsedDownSelectionPositions::initialize(), ParsedConvergence::initializeConstantSymbol(), PhysicsBase::initializePhysics(), SteffensenSolve::initialSetup(), MultiAppCloneReporterTransfer::initialSetup(), SolutionIC::initialSetup(), PiecewiseLinearBase::initialSetup(), ChainControlDataPostprocessor::initialSetup(), MultiAppConservativeTransfer::initialSetup(), IntegralPreservingFunctionIC::initialSetup(), FullSolveMultiApp::initialSetup(), PiecewiseLinear::initialSetup(), CoarsenedPiecewiseLinear::initialSetup(), SolutionScalarAux::initialSetup(), LinearFVAdvection::initialSetup(), LinearFVDiffusion::initialSetup(), MultiAppDofCopyTransfer::initialSetup(), LinearFVAnisotropicDiffusion::initialSetup(), MultiAppGeneralFieldNearestLocationTransfer::initialSetup(), SolutionAux::initialSetup(), ExplicitTimeIntegrator::initialSetup(), ReferenceResidualConvergence::initialSetup(), NodalVariableValue::initialSetup(), Axisymmetric2D3DSolutionFunction::initialSetup(), ElementSubdomainModifierBase::initialSetup(), Exodus::initialSetup(), CSV::initialSetup(), MooseParsedFunction::initialSetup(), SolutionUserObjectBase::initialSetup(), FEProblemBase::initialSetup(), SubProblem::initialSetup(), AdvancedOutput::initOutputList(), AdvancedOutput::initShowHideLists(), Function::integral(), InterfaceDiffusiveFluxIntegralTempl< is_ad >::InterfaceDiffusiveFluxIntegralTempl(), InterfaceIntegralVariableValuePostprocessor::InterfaceIntegralVariableValuePostprocessor(), InterfaceKernelTempl< T >::InterfaceKernelTempl(), InterfaceTimeKernel::InterfaceTimeKernel(), InternalSideIndicatorBase::InternalSideIndicatorBase(), MultiAppGeometricInterpolationTransfer::interpolateTargetPoints(), EigenExecutionerBase::inversePowerIteration(), InversePowerMethod::InversePowerMethod(), Sampler::isAdaptiveSamplingCompleted(), isBoundaryFullyExternalToSubdomains(), MooseVariableBase::isNodal(), IterationAdaptiveDT::IterationAdaptiveDT(), IterationCountConvergence::IterationCountConvergence(), LeastSquaresFit::LeastSquaresFit(), LibmeshPartitioner::LibmeshPartitioner(), MooseApp::libNameToAppName(), LibtorchNeuralNetControl::LibtorchNeuralNetControl(), LinearCombinationPostprocessor::LinearCombinationPostprocessor(), LinearNodalConstraint::LinearNodalConstraint(), LineMaterialSamplerBase< Real >::LineMaterialSamplerBase(), LineSearch::lineSearch(), LineValueSampler::LineValueSampler(), MooseApp::loadLibraryAndDependencies(), MultiAppGeneralFieldTransfer::locatePointReceivers(), LowerBoundNodalKernel::LowerBoundNodalKernel(), MooseLinearVariableFV< Real >::lowerDError(), PNGOutput::makePNG(), ReporterPointMarker::markerSetup(), SubProblem::markFamilyPRefinement(), MassMatrix::MassMatrix(), Material::Material(), MaterialRealTensorValueAuxTempl< is_ad >::MaterialRealTensorValueAuxTempl(), MaterialRealVectorValueAuxTempl< T, is_ad, is_functor >::MaterialRealVectorValueAuxTempl(), MaterialStdVectorRealGradientAux::MaterialStdVectorRealGradientAux(), Distribution::median(), FunctorRelationshipManager::mesh_reinit(), MeshDiagnosticsGenerator::MeshDiagnosticsGenerator(), MeshExtruderGenerator::MeshExtruderGenerator(), MeshRepairGenerator::MeshRepairGenerator(), SetupMeshAction::modifyParamsForUseSplit(), MeshMetaDataInterface::mooseErrorInternal(), MooseLinearVariableFV< Real >::MooseLinearVariableFV(), MooseMesh(), MooseObject::MooseObject(), UserObjectInterface::mooseObjectError(), MooseStaticCondensationPreconditioner::MooseStaticCondensationPreconditioner(), MooseVariableBase::MooseVariableBase(), MooseVariableConstMonomial::MooseVariableConstMonomial(), MoveNodeGenerator::MoveNodeGenerator(), MultiApp::MultiApp(), MultiAppMFEMCopyTransfer::MultiAppMFEMCopyTransfer(), MultiAppPostprocessorTransfer::MultiAppPostprocessorTransfer(), MultiAppTransfer::MultiAppTransfer(), MultiAppUserObjectTransfer::MultiAppUserObjectTransfer(), MultiAppVariableValueSamplePostprocessorTransfer::MultiAppVariableValueSamplePostprocessorTransfer(), NearestNodeDistanceAux::NearestNodeDistanceAux(), FEProblemBase::needsPreviousNewtonIteration(), NewmarkBeta::NewmarkBeta(), NodalConstraint::NodalConstraint(), MooseVariableFV< Real >::nodalDofIndex(), MooseVariableFV< Real >::nodalDofIndexNeighbor(), MooseLinearVariableFV< Real >::nodalError(), MooseVariableFV< Real >::nodalMatrixTagValue(), NodalPatchRecoveryAuxBase::NodalPatchRecoveryAuxBase(), NodalScalarKernel::NodalScalarKernel(), MooseVariableFV< Real >::nodalValueArray(), MooseVariableFV< Real >::nodalValueOldArray(), MooseVariableFV< Real >::nodalValueOlderArray(), NodalVariableValue::NodalVariableValue(), MooseVariableFV< Real >::nodalVectorTagValue(), DistributedRectilinearMeshGenerator::nodeId(), MooseVariableFV< Real >::numberOfDofsNeighbor(), NumDOFs::NumDOFs(), NumFailedTimeSteps::NumFailedTimeSteps(), DistributedRectilinearMeshGenerator::numNeighbors(), NumNonlinearIterations::NumNonlinearIterations(), NumVars::NumVars(), Output::onInterval(), FunctorRelationshipManager::operator()(), RelationshipManager::operator==(), ActionComponent::outerSurfaceArea(), ActionComponent::outerSurfaceBoundaries(), XDA::output(), SolutionHistory::output(), Exodus::output(), Output::Output(), AdvancedOutput::outputElementalVariables(), AdvancedOutput::outputInput(), MooseApp::outputMachineReadableData(), AdvancedOutput::outputNodalVariables(), AdvancedOutput::outputPostprocessors(), AdvancedOutput::outputReporters(), AdvancedOutput::outputScalarVariables(), Exodus::outputSetup(), AdvancedOutput::outputSystemInformation(), Console::outputVectorPostprocessors(), AdvancedOutput::outputVectorPostprocessors(), DistributedRectilinearMeshGenerator::paritionSquarely(), PiecewiseBilinear::parse(), ParsedConvergence::ParsedConvergence(), ParsedCurveGenerator::ParsedCurveGenerator(), ParsedODEKernel::ParsedODEKernel(), MultiAppConservativeTransfer::performAdjustment(), ExplicitTimeIntegrator::performExplicitSolve(), PetscExternalPartitioner::PetscExternalPartitioner(), MooseVariableFV< Real >::phiLowerSize(), PhysicsBasedPreconditioner::PhysicsBasedPreconditioner(), PIDTransientControl::PIDTransientControl(), PiecewiseBilinear::PiecewiseBilinear(), PiecewiseLinearInterpolationMaterial::PiecewiseLinearInterpolationMaterial(), PiecewiseMulticonstant::PiecewiseMulticonstant(), PiecewiseMultiInterpolation::PiecewiseMultiInterpolation(), PiecewiseTabularBase::PiecewiseTabularBase(), CutMeshByLevelSetGeneratorBase::pointPairLevelSetInterception(), SolutionUserObjectBase::pointValueGradientWrapper(), SolutionUserObjectBase::pointValueWrapper(), ReporterInterface::possiblyCheckHasReporter(), VectorPostprocessorInterface::possiblyCheckHasVectorPostprocessorByName(), LStableDirk2::postResidual(), LStableDirk3::postResidual(), ImplicitMidpoint::postResidual(), ExplicitTVDRK2::postResidual(), AStableDirk4::postResidual(), LStableDirk4::postResidual(), ExplicitRK2::postResidual(), EigenProblem::postScaleEigenVector(), VariableCondensationPreconditioner::preallocateCondensedJacobian(), ADKernelValueTempl< T >::precomputeQpJacobian(), FunctorKernel::precomputeQpResidual(), Predictor::Predictor(), TransientBase::preExecute(), prepare(), prepared(), ElementSubdomainModifierBase::prepareVariableForReinitialization(), FixedPointSolve::printFixedPointConvergenceReason(), PseudoTimestep::PseudoTimestep(), MultiApp::readCommandLineArguments(), PropertyReadFile::readData(), SolutionUserObjectBase::readExodusII(), SolutionUserObjectBase::readXda(), CoarsenBlockGenerator::recursiveCoarsen(), MooseApp::recursivelyCreateExecutors(), FunctorRelationshipManager::redistribute(), ReferenceResidualConvergence::ReferenceResidualConvergence(), MooseApp::registerRestartableData(), MooseApp::registerRestartableNameWithFilter(), Sampler::reinit(), RelativeSolutionDifferenceNorm::RelativeSolutionDifferenceNorm(), MFEMTransient::relativeSolutionDifferenceNorm(), MooseApp::removeRelationshipManager(), PhysicsBase::reportPotentiallyMissedParameters(), MooseApp::restore(), RinglebMesh::RinglebMesh(), RinglebMeshGenerator::RinglebMeshGenerator(), MooseApp::run(), MooseApp::runInputs(), PiecewiseMultiInterpolation::sample(), ScalarComponentIC::ScalarComponentIC(), MortarScalarBase::scalarVariable(), DistributedRectilinearMeshGenerator::scaleNodalPositions(), BicubicSplineFunction::secondDerivative(), MooseVariableFV< Real >::secondPhi(), MooseVariableFV< Real >::secondPhiFace(), MooseVariableFV< Real >::secondPhiFaceNeighbor(), MooseVariableFV< Real >::secondPhiNeighbor(), FunctorRelationshipManager::set_mesh(), MooseVariableBase::setActiveTags(), DistributedRectilinearMeshGenerator::setBoundaryNames(), setCoordSystem(), FEProblemBase::setCoupling(), PiecewiseBase::setData(), FileOutput::setFileBaseInternal(), setGeneralAxisymmetricCoordAxes(), FEProblemSolve::setInnerSolve(), MeshGenerator::setMeshProperty(), MooseApp::setMFEMDevice(), FVPointValueConstraint::setMyElem(), FEProblemBase::setNonlocalCouplingMatrix(), Sampler::setNumberOfCols(), Sampler::setNumberOfRandomSeeds(), Sampler::setNumberOfRows(), Exodus::setOutputDimensionInExodusWriter(), AddPeriodicBCAction::setPeriodicVars(), MFEMSolverBase::setPreconditioner(), MultiAppGeneralFieldTransfer::setSolutionVectorValues(), Split::setup(), TransientMultiApp::setupApp(), SetupMeshAction::setupMesh(), MooseApp::setupOptions(), TimeSequenceStepperBase::setupSequence(), TransientBase::setupTimeIntegrator(), TimePeriodBase::setupTimes(), IntegratedBCBase::shouldApply(), PhysicsBase::shouldCreateIC(), PhysicsBase::shouldCreateTimeDerivative(), PhysicsBase::shouldCreateVariable(), SideAdvectiveFluxIntegralTempl< is_ad >::SideAdvectiveFluxIntegralTempl(), SideDiffusiveFluxIntegralTempl< is_ad, Real >::SideDiffusiveFluxIntegralTempl(), SideSetsFromNormalsGenerator::SideSetsFromNormalsGenerator(), SideSetsFromPointsGenerator::SideSetsFromPointsGenerator(), SingleMatrixPreconditioner::SingleMatrixPreconditioner(), MooseVariableBase::sizeMatrixTagData(), SolutionTimeAdaptiveDT::SolutionTimeAdaptiveDT(), SolutionUserObjectBase::SolutionUserObjectBase(), ExplicitTVDRK2::solve(), ExplicitRK2::solve(), TimeIntegrator::solve(), FEProblemBase::solverSysNum(), FullSolveMultiApp::solveStep(), SpatialAverageBase::SpatialAverageBase(), UserObject::spatialPoints(), NearestPointIntegralVariablePostprocessor::spatialValue(), NearestPointAverage::spatialValue(), MeshDivisionFunctorReductionVectorPostprocessor::spatialValue(), UserObject::spatialValue(), SpiralAnnularMesh::SpiralAnnularMesh(), SpiralAnnularMeshGenerator::SpiralAnnularMeshGenerator(), WebServerControl::startServer(), StitchedMesh::StitchedMesh(), WebServerControl::stringifyJSONType(), MultiAppGeometricInterpolationTransfer::subdomainIDsNode(), Constraint::subdomainSetup(), NodalUserObject::subdomainSetup(), GeneralUserObject::subdomainSetup(), MaterialBase::subdomainSetup(), FEProblemBase::swapBackMaterialsNeighbor(), DisplacedProblem::systemBaseLinear(), Console::systemInfoFlags(), FEProblemBase::systemNumForVariable(), TerminateChainControl::terminate(), Terminator::Terminator(), CutMeshByLevelSetGeneratorBase::tet4ElemCutter(), ThreadedGeneralUserObject::threadJoin(), DiscreteElementUserObject::threadJoin(), GeneralUserObject::threadJoin(), Function::timeDerivative(), TimedSubdomainModifier::TimedSubdomainModifier(), TimeExtremeValue::TimeExtremeValue(), Function::timeIntegral(), MooseLinearVariableFV< Real >::timeIntegratorError(), TimeIntervalTimes::TimeIntervalTimes(), TimePeriodBase::TimePeriodBase(), VectorPostprocessorVisualizationAux::timestepSetup(), WebServerControl::toMiniJson(), MultiAppDofCopyTransfer::transfer(), MultiAppMFEMCopyTransfer::transfer(), MultiAppShapeEvaluationTransfer::transferVariable(), TransformedPositions::TransformedPositions(), FEProblemBase::trustUserCouplingMatrix(), MooseVariableScalar::uDot(), MooseVariableScalar::uDotDot(), MooseVariableScalar::uDotDotOld(), FEProblemBase::uDotDotOldRequested(), MooseVariableScalar::uDotOld(), FEProblemBase::uDotOldRequested(), MooseBase::uniqueName(), Positions::unrollMultiDPositions(), ScalarKernelBase::uOld(), AuxScalarKernel::uOld(), Checkpoint::updateCheckpointFiles(), EqualValueBoundaryConstraint::updateConstrainedNodes(), SolutionUserObjectBase::updateExodusBracketingTimeIndices(), FEProblemBase::updateMaxQps(), MFEMHypreAMS::updateSolver(), MFEMHypreADS::updateSolver(), MFEMHyprePCG::updateSolver(), MFEMGMRESSolver::updateSolver(), MFEMOperatorJacobiSmoother::updateSolver(), MFEMHypreBoomerAMG::updateSolver(), MFEMCGSolver::updateSolver(), MFEMHypreFGMRES::updateSolver(), MFEMHypreGMRES::updateSolver(), MFEMSuperLU::updateSolver(), UpperBoundNodalKernel::UpperBoundNodalKernel(), NearestPointIntegralVariablePostprocessor::userObjectValue(), NearestPointAverage::userObjectValue(), BoundingBoxIC::value(), PiecewiseConstantFromCSV::value(), IntegralPreservingFunctionIC::value(), Axisymmetric2D3DSolutionFunction::value(), Function::value(), ValueRangeMarker::ValueRangeMarker(), ValueThresholdMarker::ValueThresholdMarker(), VariableCondensationPreconditioner::VariableCondensationPreconditioner(), PhysicsBase::variableExists(), MultiAppTransfer::variableIntegrityCheck(), VariableTimeIntegrationAux::VariableTimeIntegrationAux(), AddVariableAction::variableType(), VariableValueVolumeHistogram::VariableValueVolumeHistogram(), VectorMagnitudeFunctorMaterialTempl< is_ad >::VectorMagnitudeFunctorMaterialTempl(), VectorNodalBC::VectorNodalBC(), SubProblem::vectorTagName(), SubProblem::vectorTagType(), MooseParsedGradFunction::vectorValue(), MooseParsedFunction::vectorValue(), Function::vectorValue(), SubProblem::verifyVectorTags(), ActionComponent::volume(), VTKOutput::VTKOutput(), WebServerControl::WebServerControl(), MooseApp::writeRestartableMetaData(), DOFMapOutput::writeStreamToFile(), and Console::writeStreamToFile().

272  {
273  callMooseError(argumentsToString(std::forward<Args>(args)...), /* with_prefix = */ true);
274  }
void callMooseError(std::string msg, const bool with_prefix, const hit::Node *node=nullptr) const
External method for calling moose error with added object context.
Definition: MooseBase.C:105

◆ mooseErrorNonPrefixed()

template<typename... Args>
void MooseBase::mooseErrorNonPrefixed ( Args &&...  args) const
inlineinherited

Emits an error without the prefixing included in mooseError().

Definition at line 290 of file MooseBase.h.

291  {
292  callMooseError(argumentsToString(std::forward<Args>(args)...), /* with_prefix = */ false);
293  }
void callMooseError(std::string msg, const bool with_prefix, const hit::Node *node=nullptr) const
External method for calling moose error with added object context.
Definition: MooseBase.C:105

◆ mooseInfo()

template<typename... Args>
void MooseBase::mooseInfo ( Args &&...  args) const
inlineinherited

Definition at line 321 of file MooseBase.h.

Referenced by SetupRecoverFileBaseAction::act(), AStableDirk4::AStableDirk4(), MeshDiagnosticsGenerator::checkNonConformalMeshFromAdaptivity(), MultiAppGeneralFieldNearestLocationTransfer::evaluateInterpValuesNearestNode(), PIDTransientControl::execute(), Executioner::Executioner(), ExplicitRK2::ExplicitRK2(), ExplicitTVDRK2::ExplicitTVDRK2(), DataFileInterface::getDataFilePath(), MFEMScalarFESpace::getFECName(), MultiAppTransfer::getPointInTargetAppFrame(), ImplicitMidpoint::ImplicitMidpoint(), ParsedDownSelectionPositions::initialize(), PropertyReadFile::initialize(), MultiAppGeneralFieldTransfer::initialSetup(), InversePowerMethod::InversePowerMethod(), LStableDirk2::LStableDirk2(), LStableDirk3::LStableDirk3(), LStableDirk4::LStableDirk4(), PNGOutput::makeMeshFunc(), NonlinearEigen::NonlinearEigen(), SolutionInvalidityOutput::output(), MultiAppGeneralFieldTransfer::outputValueConflicts(), MooseBase::paramInfo(), ProjectionAux::ProjectionAux(), ReferenceResidualConvergence::ReferenceResidualConvergence(), MFEMDataCollection::registerFields(), FEProblemBase::setRestartFile(), MooseApp::setupOptions(), SolutionUserObjectBase::SolutionUserObjectBase(), SymmetryTransformGenerator::SymmetryTransformGenerator(), TransientBase::takeStep(), and TransientBase::TransientBase().

322  {
323  moose::internal::mooseInfoStream(_console, messagePrefix(true), std::forward<Args>(args)...);
324  }
void mooseInfoStream(S &oss, Args &&... args)
Definition: MooseError.h:258
const ConsoleStream _console
An instance of helper class to write streams to the Console objects.
std::string messagePrefix(const bool hit_prefix=true) const
Definition: MooseBase.h:256

◆ mooseWarning()

template<typename... Args>
void MooseBase::mooseWarning ( Args &&...  args) const
inlineinherited

Emits a warning prefixed with object name and type.

Definition at line 299 of file MooseBase.h.

Referenced by CopyMeshPartitioner::_do_partition(), AddKernelAction::act(), MeshOnlyAction::act(), AddFunctionAction::act(), MaterialOutputAction::act(), CommonOutputAction::act(), MFEMProblem::addFunction(), addPeriodicVariable(), DiracKernelBase::addPoint(), BoundaryMarker::BoundaryMarker(), DistributedRectilinearMeshGenerator::buildCube(), MultiAppVariableValueSamplePostprocessorTransfer::cacheElemToPostprocessorData(), CartesianMeshGenerator::CartesianMeshGenerator(), CheckOutputAction::checkConsoleOutput(), MultiAppTransfer::checkMultiAppExecuteOn(), MeshDiagnosticsGenerator::checkNonMatchingEdges(), ActionComponent::checkRequiredTasks(), PhysicsBase::checkRequiredTasks(), SampledOutput::cloneMesh(), MultiAppGeneralFieldTransfer::closestToPosition(), VariableValueElementSubdomainModifier::computeSubdomainID(), GapValueAux::computeValue(), MultiApp::createApp(), DebugResidualAux::DebugResidualAux(), MeshDiagnosticsGenerator::diagnosticsLog(), CartesianGridDivision::divisionIndex(), CylindricalGridDivision::divisionIndex(), SphericalGridDivision::divisionIndex(), ElementMaterialSampler::ElementMaterialSampler(), Postprocessor::evaluateDotWarning(), MeshDivisionFunctorReductionVectorPostprocessor::execute(), ElementQualityChecker::finalize(), FiniteDifferencePreconditioner::FiniteDifferencePreconditioner(), FixedPointSolve::FixedPointSolve(), SubdomainPerElementGenerator::generate(), StitchMeshGenerator::generate(), ParsedGenerateSideset::generate(), MultiAppTransfer::getAppInfo(), FunctorBinnedValuesDivision::getBinIndex(), DataFileInterface::getDataFilePath(), PointSamplerBase::getLocalElemContainingPoint(), FEProblemBase::getMaterial(), LineValueSampler::getValue(), Terminator::handleMessage(), IndicatorMarker::IndicatorMarker(), CartesianGridDivision::initialize(), CylindricalGridDivision::initialize(), SphericalGridDivision::initialize(), ElementGroupCentroidPositions::initialize(), MultiAppGeneralFieldNearestLocationTransfer::initialSetup(), BoundsBase::initialSetup(), ReferenceResidualConvergence::initialSetup(), MultiAppGeneralFieldTransfer::initialSetup(), FEProblemBase::initialSetup(), AdvancedOutput::initPostprocessorOrVectorPostprocessorLists(), MaterialBase::initStatefulProperties(), LeastSquaresFit::LeastSquaresFit(), IterationAdaptiveDT::limitDTToPostprocessorValue(), MooseApp::loadLibraryAndDependencies(), FEProblemBase::mesh(), MultiAppGeneralFieldTransfer::MultiAppGeneralFieldTransfer(), NewmarkBeta::NewmarkBeta(), NodalPatchRecovery::NodalPatchRecovery(), NonlocalIntegratedBC::NonlocalIntegratedBC(), NonlocalKernel::NonlocalKernel(), Output::Output(), MaterialOutputAction::outputHelper(), MultiAppGeneralFieldTransfer::outputValueConflicts(), MooseBase::paramWarning(), PiecewiseConstantFromCSV::PiecewiseConstantFromCSV(), Executioner::problem(), PropertyReadFile::readData(), TestSourceStepper::rejectStep(), PhysicsBase::reportPotentiallyMissedParameters(), MaterialBase::resetQpProperties(), SecondTimeDerivativeAux::SecondTimeDerivativeAux(), setCoordSystem(), SidesetAroundSubdomainUpdater::SidesetAroundSubdomainUpdater(), FEProblemBase::sizeZeroes(), TransientMultiApp::solveStep(), Tecplot::Tecplot(), TimeDerivativeAux::TimeDerivativeAux(), Checkpoint::updateCheckpointFiles(), SampledOutput::updateSample(), PiecewiseConstantFromCSV::value(), and VariableCondensationPreconditioner::VariableCondensationPreconditioner().

300  {
301  moose::internal::mooseWarningStream(_console, messagePrefix(true), std::forward<Args>(args)...);
302  }
void mooseWarningStream(S &oss, Args &&... args)
Definition: MooseError.h:210
const ConsoleStream _console
An instance of helper class to write streams to the Console objects.
std::string messagePrefix(const bool hit_prefix=true) const
Definition: MooseBase.h:256

◆ mooseWarningNonPrefixed()

template<typename... Args>
void MooseBase::mooseWarningNonPrefixed ( Args &&...  args) const
inlineinherited

Emits a warning without the prefixing included in mooseWarning().

Definition at line 308 of file MooseBase.h.

309  {
310  moose::internal::mooseWarningStream(_console, std::forward<Args>(args)...);
311  }
void mooseWarningStream(S &oss, Args &&... args)
Definition: MooseError.h:210
const ConsoleStream _console
An instance of helper class to write streams to the Console objects.

◆ nActiveElem()

virtual dof_id_type MooseMesh::nActiveElem ( ) const
inlinevirtual

Reimplemented in MFEMMesh.

Definition at line 329 of file MooseMesh.h.

329 { return _mesh->n_active_elem(); }
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1459

◆ nActiveLocalElem()

virtual dof_id_type MooseMesh::nActiveLocalElem ( ) const
inlinevirtual

Reimplemented in MFEMMesh.

Definition at line 330 of file MooseMesh.h.

330 { return _mesh->n_active_local_elem(); }
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1459

◆ name()

const std::string& MooseBase::name ( ) const
inlineinherited

Get the name of the class.

Returns
The name of the class

Definition at line 103 of file MooseBase.h.

Referenced by AddElementalFieldAction::act(), CopyNodalVarsAction::act(), AdaptivityAction::act(), AddTimeStepperAction::act(), DeprecatedBlockAction::act(), SetupTimeIntegratorAction::act(), AddActionComponentAction::act(), SetupResidualDebugAction::act(), DisplayGhostingAction::act(), MaterialOutputAction::act(), AddPeriodicBCAction::act(), FEProblemBase::addAnyRedistributers(), Executioner::addAttributeReporter(), MFEMProblem::addAuxKernel(), FEProblemBase::addAuxKernel(), FEProblemBase::addAuxScalarKernel(), DisplacedProblem::addAuxVariable(), MFEMProblem::addBoundaryCondition(), FEProblemBase::addBoundaryCondition(), PhysicsComponentInterface::addComponent(), FEProblemBase::addConstraint(), FEProblemBase::addConvergence(), FEProblemBase::addDamper(), Registry::addDataFilePath(), FEProblemBase::addDGKernel(), FEProblemBase::addDiracKernel(), FEProblemBase::addDistribution(), MooseApp::addExecutor(), MooseApp::addExecutorParams(), MFEMProblem::addFESpace(), MFEMProblem::addFunction(), FEProblemBase::addFunction(), SubProblem::addFunctor(), MFEMProblem::addFunctorMaterial(), FEProblemBase::addFunctorMaterial(), FunctorMaterial::addFunctorProperty(), FunctorMaterial::addFunctorPropertyByBlocks(), FEProblemBase::addFVBC(), FEProblemBase::addFVInitialCondition(), FEProblemBase::addFVInterfaceKernel(), FEProblemBase::addFVKernel(), ADDGKernel::ADDGKernel(), FEProblemBase::addHDGKernel(), FEProblemBase::addIndicator(), MFEMProblem::addInitialCondition(), FEProblemBase::addInitialCondition(), FEProblemBase::addInterfaceKernel(), FEProblemBase::addInterfaceMaterial(), DiffusionLHDGKernel::additionalROVariables(), IPHDGAssemblyHelper::additionalROVariables(), MFEMProblem::addKernel(), FEProblemBase::addKernel(), FEProblemBase::addLinearFVBC(), FEProblemBase::addLinearFVKernel(), FEProblemBase::addMarker(), FEProblemBase::addMaterial(), FEProblemBase::addMaterialHelper(), ComponentMaterialPropertyInterface::addMaterials(), FEProblemBase::addMeshDivision(), MooseApp::addMeshGenerator(), ComponentMeshTransformHelper::addMeshGenerators(), CylinderComponent::addMeshGenerators(), MeshGenerator::addMeshSubgenerator(), MFEMProblem::addMFEMPreconditioner(), MFEMProblem::addMFEMSolver(), FEProblemBase::addMultiApp(), FEProblemBase::addNodalKernel(), InitialConditionWarehouse::addObject(), FEProblemBase::addObject(), ComponentPhysicsInterface::addPhysics(), SubProblem::addPiecewiseByBlockLambdaFunctor(), MFEMProblem::addPostprocessor(), FEProblemBase::addPostprocessor(), InitialConditionBase::addPostprocessorDependencyHelper(), UserObject::addPostprocessorDependencyHelper(), FEProblemBase::addPredictor(), CreateDisplacedProblemAction::addProxyRelationshipManagers(), Action::addRelationshipManager(), FEProblemBase::addReporter(), FEProblemBase::addSampler(), FEProblemBase::addScalarKernel(), FEProblemBase::addTimeIntegrator(), MFEMProblem::addTransfer(), FEProblemBase::addTransfer(), FEProblemBase::addUserObject(), InitialConditionBase::addUserObjectDependencyHelper(), UserObject::addUserObjectDependencyHelper(), AuxKernelTempl< Real >::addUserObjectDependencyHelper(), DisplacedProblem::addVariable(), FEProblemBase::addVectorPostprocessor(), UserObject::addVectorPostprocessorDependencyHelper(), MooseLinearVariableFV< Real >::adError(), Output::advancedExecuteOn(), AdvancedExtruderGenerator::AdvancedExtruderGenerator(), MooseVariableBase::allDofIndices(), MooseApp::appBinaryName(), MooseApp::appendMeshGenerator(), Registry::appNameFromAppPath(), MultiApp::appPostprocessorValue(), MultiApp::appProblem(), MultiApp::appProblemBase(), MultiApp::appUserObjectBase(), ArrayDGKernel::ArrayDGKernel(), ArrayParsedAux::ArrayParsedAux(), PhysicsBase::assignBlocks(), AStableDirk4::AStableDirk4(), AuxKernelTempl< Real >::AuxKernelTempl(), Function::average(), MultiApp::backup(), Boundary2DDelaunayGenerator::Boundary2DDelaunayGenerator(), CoarsenedPiecewiseLinear::buildCoarsenedGrid(), MFEMFESpace::buildFEC(), PiecewiseTabularBase::buildFromFile(), MultiAppVariableValueSamplePostprocessorTransfer::cacheElemToPostprocessorData(), MooseBase::callMooseError(), ChangeOverFixedPointPostprocessor::ChangeOverFixedPointPostprocessor(), ChangeOverTimePostprocessor::ChangeOverTimePostprocessor(), PhysicsBase::checkBlockRestrictionIdentical(), PhysicsBase::checkComponentType(), ParsedConvergence::checkConvergence(), DefaultNonlinearConvergence::checkConvergence(), FEProblemBase::checkDependMaterialsHelper(), SamplerBase::checkForStandardFieldVariableType(), ReporterTransferInterface::checkHasReporterValue(), FEProblemBase::checkICRestartError(), Moose::Kokkos::Material::checkMaterialProperty(), Material::checkMaterialProperty(), MooseApp::checkMetaDataIntegrity(), Damper::checkMinDamping(), MultiAppTransfer::checkParentAppUserObjectExecuteOn(), Checkpoint::checkpointInfo(), DomainUserObject::checkVariable(), BlockRestrictable::checkVariable(), Coupleable::checkWritableVar(), MooseVariableFieldBase::componentName(), CompositeFunction::CompositeFunction(), MaterialBase::computeProperties(), FEProblemBase::computeUserObjectByName(), VectorPostprocessorVisualizationAux::computeValue(), MooseBase::connectControllableParams(), ConstantPostprocessor::ConstantPostprocessor(), Coupleable::coupledName(), CommonOutputAction::create(), MultiApp::createApp(), MooseApp::createExecutors(), MeshGeneratorSystem::createMeshGeneratorOrder(), MooseApp::createRecoverablePerfGraph(), CutMeshByPlaneGenerator::CutMeshByPlaneGenerator(), DebugResidualAux::DebugResidualAux(), MaterialBase::declareADProperty(), MeshGenerator::declareMeshesForSubByName(), MeshGenerator::declareNullMeshName(), MaterialBase::declareProperty(), DOFMapOutput::demangle(), DerivativeSumMaterialTempl< is_ad >::DerivativeSumMaterialTempl(), Registry::determineDataFilePath(), DGKernel::DGKernel(), DGKernelBase::DGKernelBase(), DomainUserObject::DomainUserObject(), DumpObjectsProblem::dumpObjectHelper(), ElementGroupCentroidPositions::ElementGroupCentroidPositions(), ElementMaterialSampler::ElementMaterialSampler(), ElementValueSampler::ElementValueSampler(), EigenKernel::enabled(), errorIfDistributedMesh(), SolutionUserObjectBase::evalMeshFunction(), SolutionUserObjectBase::evalMeshFunctionGradient(), SolutionUserObjectBase::evalMultiValuedMeshFunction(), SolutionUserObjectBase::evalMultiValuedMeshFunctionGradient(), SideValueSampler::execute(), RestartableDataReporter::execute(), GreaterThanLessThanPostprocessor::execute(), PointValue::execute(), MultiAppNearestNodeTransfer::execute(), MultiAppProjectionTransfer::execute(), MultiAppUserObjectTransfer::execute(), WebServerControl::execute(), MultiAppGeneralFieldTransfer::execute(), ActionWarehouse::executeActionsWithAction(), Exodus::Exodus(), ExtraIDIntegralVectorPostprocessor::ExtraIDIntegralVectorPostprocessor(), FEProblemBase::FEProblemBase(), MultiApp::fillPositions(), MultiAppGeometricInterpolationTransfer::fillSourceInterpolationPoints(), PointSamplerBase::finalize(), ChainControl::fullControlDataName(), FunctionArrayAux::FunctionArrayAux(), FunctionDT::FunctionDT(), FunctionIC::functionName(), FVFunctionIC::functionName(), FunctorPositions::FunctorPositions(), FunctorSmootherTempl< T >::FunctorSmootherTempl(), FVInitialConditionTempl< T >::FVInitialConditionTempl(), FVOneVarDiffusionInterface::FVOneVarDiffusionInterface(), GapValueAux::GapValueAux(), MooseServer::gatherDocumentSymbols(), BoundaryDeletionGenerator::generate(), UniqueExtraIDMeshGenerator::generate(), RenameBlockGenerator::generate(), RenameBoundaryGenerator::generate(), BreakMeshByBlockGenerator::generate(), GeneratedMeshGenerator::generate(), ParsedSubdomainGeneratorBase::generate(), SideSetsFromNodeSetsGenerator::generate(), StitchBoundaryMeshGenerator::generate(), StitchMeshGenerator::generate(), ParsedExtraElementIDGenerator::generate(), XYDelaunayGenerator::generate(), SubdomainBoundingBoxGenerator::generate(), MeshGenerator::generateInternal(), InterfaceMaterial::getADMaterialProperty(), Material::getADMaterialProperty(), MultiAppTransfer::getAppInfo(), MultiApp::getBoundingBox(), MooseBase::getCheckedPointerParam(), MooseApp::getCheckpointDirectories(), Control::getControllableParameterByName(), Control::getControllableValue(), Control::getControllableValueByName(), FEProblemBase::getConvergence(), Registry::getDataFilePath(), UserObject::getDependObjects(), DistributionInterface::getDistribution(), FEProblemBase::getDistribution(), DistributionInterface::getDistributionByName(), ElementUOProvider::getElementalValueLong(), ElementUOProvider::getElementalValueReal(), MultiApp::getExecutioner(), MooseApp::getExecutor(), FEProblemBase::getExecutor(), OutputWarehouse::getFileNumbers(), FEProblemBase::getFunction(), SubProblem::getFunctor(), NodalPatchRecovery::getGenericMaterialProperty(), InterfaceMaterial::getGenericMaterialProperty(), Material::getGenericMaterialProperty(), AuxKernelTempl< Real >::getGenericMaterialProperty(), InterfaceMaterial::getGenericNeighborMaterialProperty(), InterfaceMaterial::getGenericNeighborMaterialPropertyByName(), Material::getGenericOptionalMaterialProperty(), MaterialBase::getGenericZeroMaterialProperty(), MFEMProblem::getGridFunction(), Moose::Kokkos::Material::getKokkosMaterialProperty(), Moose::Kokkos::Material::getKokkosMaterialPropertyOld(), Moose::Kokkos::Material::getKokkosMaterialPropertyOlder(), SolutionUserObjectBase::getLocalVarIndex(), Marker::getMarkerValue(), Material::getMaterial(), FEProblemBase::getMaterial(), Material::getMaterialByName(), NodalPatchRecovery::getMaterialProperty(), InterfaceMaterial::getMaterialProperty(), Material::getMaterialProperty(), AuxKernelTempl< Real >::getMaterialProperty(), SubProblem::getMaterialPropertyBlockNames(), SubProblem::getMaterialPropertyBoundaryNames(), NodalPatchRecovery::getMaterialPropertyOld(), InterfaceMaterial::getMaterialPropertyOld(), Material::getMaterialPropertyOld(), AuxKernelTempl< Real >::getMaterialPropertyOld(), NodalPatchRecovery::getMaterialPropertyOlder(), InterfaceMaterial::getMaterialPropertyOlder(), Material::getMaterialPropertyOlder(), AuxKernelTempl< Real >::getMaterialPropertyOlder(), MFEMGeneralUserObject::getMatrixCoefficient(), MFEMGeneralUserObject::getMatrixCoefficientByName(), MeshGenerator::getMesh(), FEProblemBase::getMeshDivision(), MeshGenerator::getMeshesByName(), MooseApp::getMeshGenerator(), MeshGenerator::getMeshGeneratorNameFromParam(), MeshGenerator::getMeshGeneratorNamesFromParam(), ActionWarehouse::getMooseAppName(), MultiAppTransfer::getMultiApp(), InterfaceMaterial::getNeighborADMaterialProperty(), InterfaceMaterial::getNeighborMaterialProperty(), InterfaceMaterial::getNeighborMaterialPropertyOld(), InterfaceMaterial::getNeighborMaterialPropertyOlder(), MooseServer::getObjectParameters(), Material::getOptionalADMaterialProperty(), Material::getOptionalMaterialProperty(), Material::getOptionalMaterialPropertyOld(), Material::getOptionalMaterialPropertyOlder(), OutputWarehouse::getOutput(), MooseBase::getParam(), FEProblemBase::getPositionsObject(), FEProblemBase::getPostprocessorValueByName(), ComponentMaterialPropertyInterface::getPropertyValue(), ReporterData::getReporterInfo(), MooseApp::getRestartableDataMap(), MooseApp::getRestartableDataMapName(), MooseApp::getRestartableMetaData(), FEProblemBase::getSampler(), MFEMGeneralUserObject::getScalarCoefficient(), MFEMGeneralUserObject::getScalarCoefficientByName(), TimedSubdomainModifier::getSubdomainIDAndCheck(), TransientBase::getTimeStepperName(), ProjectedStatefulMaterialStorageAction::getTypeEnum(), FEProblemBase::getUserObject(), FEProblemBase::getUserObjectBase(), MFEMGeneralUserObject::getVectorCoefficient(), MFEMGeneralUserObject::getVectorCoefficientByName(), Terminator::handleMessage(), Control::hasControllableParameterByName(), FEProblemBase::hasConvergence(), FEProblemBase::hasFunction(), SubProblem::hasFunctor(), SubProblem::hasFunctorWithType(), MooseApp::hasMeshGenerator(), AdvancedOutput::hasOutputHelper(), FEProblemBase::hasPostprocessor(), FEProblemBase::hasPostprocessorValueByName(), MooseApp::hasRelationshipManager(), MooseApp::hasRestartableDataMap(), MooseApp::hasRestartableMetaData(), FEProblemBase::hasUserObject(), IterationAdaptiveDT::init(), AddVariableAction::init(), AdvancedOutput::init(), AdvancedOutput::initExecutionTypes(), AttribName::initFrom(), NestedDivision::initialize(), TransformedPositions::initialize(), BoundaryRestrictable::initializeBoundaryRestrictable(), JSONOutput::initialSetup(), SideFVFluxBCIntegral::initialSetup(), SolutionScalarAux::initialSetup(), MultiAppProjectionTransfer::initialSetup(), NodalVariableValue::initialSetup(), Console::initialSetup(), SolutionUserObjectBase::initialSetup(), AdvancedOutput::initOutputList(), AdvancedOutput::initPostprocessorOrVectorPostprocessorLists(), MaterialBase::initStatefulProperties(), Function::integral(), InterfaceKernelTempl< T >::InterfaceKernelTempl(), MultiAppGeometricInterpolationTransfer::interpolateTargetPoints(), MeshGenerator::isChildMeshGenerator(), DerivativeMaterialInterface< MortarScalarBase >::isNotObjectVariable(), MeshGenerator::isNullMeshName(), MooseBase::isParamSetByUser(), MooseBase::isParamValid(), MeshGenerator::isParentMeshGenerator(), LinearCombinationFunction::LinearCombinationFunction(), FEProblemBase::logAdd(), MooseLinearVariableFV< Real >::lowerDError(), Marker::Marker(), MaterialBase::markMatPropRequested(), MatDiffusionBase< Real >::MatDiffusionBase(), Material::Material(), MaterialDerivativeTestKernelBase< Real >::MaterialDerivativeTestKernelBase(), Distribution::median(), MemoryUsageReporter::MemoryUsageReporter(), MeshGenerator::meshPropertyPrefix(), MooseBase::messagePrefix(), OutputWarehouse::mooseConsole(), MooseVariableBase::MooseVariableBase(), MooseVariableInterface< Real >::MooseVariableInterface(), MultiAppGeneralFieldTransfer::MultiAppGeneralFieldTransfer(), MultiAppUserObjectTransfer::MultiAppUserObjectTransfer(), MooseLinearVariableFV< Real >::nodalError(), NodalPatchRecoveryAuxBase::NodalPatchRecoveryAuxBase(), NodalValueSampler::NodalValueSampler(), Registry::objData(), MeshGenerator::Comparator::operator()(), ProgressOutput::output(), DOFMapOutput::output(), Output::Output(), AdvancedOutput::outputElementalVariables(), ConsoleUtils::outputExecutionInformation(), MaterialOutputAction::outputHelper(), AdvancedOutput::outputInput(), AdvancedOutput::outputNodalVariables(), Exodus::outputPostprocessors(), AdvancedOutput::outputPostprocessors(), TableOutput::outputReporter(), AdvancedOutput::outputReporters(), AdvancedOutput::outputScalarVariables(), AdvancedOutput::outputSystemInformation(), AdvancedOutput::outputVectorPostprocessors(), ParsedCurveGenerator::ParsedCurveGenerator(), ParsedODEKernel::ParsedODEKernel(), ComponentPhysicsInterface::physicsExists(), PiecewiseBilinear::PiecewiseBilinear(), PiecewiseByBlockFunctorMaterialTempl< T >::PiecewiseByBlockFunctorMaterialTempl(), MooseApp::possiblyLoadRestartableMetaData(), PhysicsBase::prefix(), prepare(), BlockRestrictionDebugOutput::printBlockRestrictionMap(), PerfGraphLivePrint::printStats(), FEProblemBase::projectInitialConditionOnCustomRange(), MooseBase::queryParam(), MultiApp::readCommandLineArguments(), Receiver::Receiver(), Executor::Result::record(), AppFactory::reg(), Registry::registerObjectsTo(), FEProblemBase::registerRandomInterface(), MooseApp::registerRestartableDataMapName(), MooseApp::registerRestartableNameWithFilter(), MaterialBase::resetQpProperties(), MultiApp::restore(), ScalarComponentIC::ScalarComponentIC(), MultiApp::setAppOutputFileBase(), setBoundaryName(), Control::setControllableValue(), Control::setControllableValueByName(), OutputWarehouse::setFileNumbers(), FEProblemBase::setPostprocessorValueByName(), FEProblemBase::setResidualObjectParamsAndLog(), setSubdomainName(), NodeSetsGeneratorBase::setup(), Split::setup(), SideSetsGeneratorBase::setup(), TransientMultiApp::setupApp(), FullSolveMultiApp::showStatusMessage(), SideSetExtruderGenerator::SideSetExtruderGenerator(), TransientMultiApp::solveStep(), UserObject::spatialValue(), WebServerControl::startServer(), StitchedMesh::StitchedMesh(), SubProblem::storeBoundaryDelayedCheckMatProp(), SubProblem::storeBoundaryMatPropName(), MaterialBase::storeBoundaryZeroMatProp(), SubProblem::storeBoundaryZeroMatProp(), SubProblem::storeSubdomainDelayedCheckMatProp(), SubProblem::storeSubdomainMatPropName(), MaterialBase::storeSubdomainZeroMatProp(), SubProblem::storeSubdomainZeroMatProp(), ConstraintWarehouse::subdomainsCovered(), MaterialBase::subdomainSetup(), TaggingInterface::TaggingInterface(), MooseLinearVariableFV< Real >::timeIntegratorError(), VectorPostprocessorVisualizationAux::timestepSetup(), ElementSubdomainModifierBase::timestepSetup(), to_json(), MultiAppDofCopyTransfer::transfer(), MultiAppShapeEvaluationTransfer::transferVariable(), TransientMultiApp::TransientMultiApp(), MooseServer::traverseParseTreeAndFillSymbols(), MooseBase::typeAndName(), MooseBase::uniqueParameterName(), FVFluxBC::uOnGhost(), FVFluxBC::uOnUSub(), UserObject::UserObject(), UserObjectInterface::userObjectName(), ParsedAux::validateGenericVectorNames(), PhysicsBase::variableExists(), MultiAppTransfer::variableIntegrityCheck(), VectorMagnitudeFunctorMaterialTempl< is_ad >::VectorMagnitudeFunctorMaterialTempl(), Convergence::verboseOutput(), AdvancedOutput::wantOutput(), Coupleable::writableCoupledValue(), Coupleable::writableVariable(), Console::write(), and MooseApp::writeRestartableMetaData().

104  {
105  mooseAssert(_name.size(), "Empty name");
106  return _name;
107  }
const std::string & _name
The name of this class.
Definition: MooseBase.h:363

◆ needGhostGhostedBoundaries()

void MooseMesh::needGhostGhostedBoundaries ( bool  needghost)
inline

Whether or not we want to ghost ghosted boundaries.

Definition at line 620 of file MooseMesh.h.

Referenced by DistributedRectilinearMeshGenerator::generate().

620 { _need_ghost_ghosted_boundaries = needghost; }
bool _need_ghost_ghosted_boundaries
A parallel mesh generator such as DistributedRectilinearMeshGenerator already make everything ready...
Definition: MooseMesh.h:1868

◆ needsPrepareForUse()

void MooseMesh::needsPrepareForUse ( )

If this method is called, we will call libMesh's prepare_for_use method when we call Moose's prepare method.

This should only be set when the mesh structure is changed by MeshGenerators (i.e. Element deletion).

Definition at line 3205 of file MooseMesh.C.

3206 {
3207  prepared(false);
3208 }
bool prepared() const
Setter/getter for whether the mesh is prepared.
Definition: MooseMesh.C:3177

◆ needsRemoteElemDeletion() [1/2]

void MooseMesh::needsRemoteElemDeletion ( bool  need_delete)
inline

Set whether we need to delete remote elements.

Definition at line 1090 of file MooseMesh.h.

1090 { _need_delete = need_delete; }
bool _need_delete
Whether we need to delete remote elements after init&#39;ing the EquationSystems.
Definition: MooseMesh.h:1856

◆ needsRemoteElemDeletion() [2/2]

bool MooseMesh::needsRemoteElemDeletion ( ) const
inline

Whether we need to delete remote elements.

Definition at line 1095 of file MooseMesh.h.

1095 { return _need_delete; }
bool _need_delete
Whether we need to delete remote elements after init&#39;ing the EquationSystems.
Definition: MooseMesh.h:1856

◆ nElem()

dof_id_type MooseMesh::nElem ( ) const
virtual

Definition at line 3121 of file MooseMesh.C.

Referenced by PropertyReadFile::getElementData(), and PropertyReadFile::readData().

3122 {
3123  return getMesh().n_elem();
3124 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
virtual dof_id_type n_elem() const=0

◆ nFace()

unsigned int MooseMesh::nFace ( ) const
inline

accessors for the FaceInfo objects

Definition at line 1173 of file MooseMesh.h.

1173 { return _face_info.size(); }
std::vector< const FaceInfo * > _face_info
Holds only those FaceInfo objects that have processor_id equal to this process&#39;s id, e.g.
Definition: MooseMesh.h:1639

◆ nLocalNodes()

virtual dof_id_type MooseMesh::nLocalNodes ( ) const
inlinevirtual

Definition at line 328 of file MooseMesh.h.

328 { return _mesh->n_local_nodes(); }
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1459

◆ nNodes()

dof_id_type MooseMesh::nNodes ( ) const
virtual

Calls n_nodes/elem() on the underlying libMesh mesh object.

Definition at line 3115 of file MooseMesh.C.

Referenced by PropertyReadFile::getNodeData(), and PropertyReadFile::readData().

3116 {
3117  return getMesh().n_nodes();
3118 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
virtual dof_id_type n_nodes() const=0

◆ node() [1/2]

const Node & MooseMesh::node ( const dof_id_type  i) const
virtual

Various accessors (pointers/references) for Node "i".

If the requested node is a remote node on a distributed mesh, only the query accessors are valid to call, and they return NULL.

Definition at line 835 of file MooseMesh.C.

Referenced by addUniqueNode(), GeneratedMesh::buildMesh(), buildPeriodicNodeMap(), cacheInfo(), detectOrthogonalDimRanges(), getNodeBlockIds(), isSemiLocal(), and updateActiveSemiLocalNodeRange().

836 {
837  mooseDeprecated("MooseMesh::node() is deprecated, please use MooseMesh::nodeRef() instead");
838  return nodeRef(i);
839 }
virtual const Node & nodeRef(const dof_id_type i) const
Definition: MooseMesh.C:849
void mooseDeprecated(Args &&... args) const
Definition: MooseBase.h:314

◆ node() [2/2]

Node & MooseMesh::node ( const dof_id_type  i)
virtual

Definition at line 842 of file MooseMesh.C.

843 {
844  mooseDeprecated("MooseMesh::node() is deprecated, please use MooseMesh::nodeRef() instead");
845  return nodeRef(i);
846 }
virtual const Node & nodeRef(const dof_id_type i) const
Definition: MooseMesh.C:849
void mooseDeprecated(Args &&... args) const
Definition: MooseBase.h:314

◆ nodePtr() [1/2]

const Node * MooseMesh::nodePtr ( const dof_id_type  i) const
virtual

Definition at line 863 of file MooseMesh.C.

Referenced by ElementSubdomainModifierBase::reinitializedNodeRange().

864 {
865  return &nodeRef(i);
866 }
virtual const Node & nodeRef(const dof_id_type i) const
Definition: MooseMesh.C:849

◆ nodePtr() [2/2]

Node * MooseMesh::nodePtr ( const dof_id_type  i)
virtual

Definition at line 869 of file MooseMesh.C.

870 {
871  return &nodeRef(i);
872 }
virtual const Node & nodeRef(const dof_id_type i) const
Definition: MooseMesh.C:849

◆ nodeRef() [1/2]

const Node & MooseMesh::nodeRef ( const dof_id_type  i) const
virtual

◆ nodeRef() [2/2]

Node & MooseMesh::nodeRef ( const dof_id_type  i)
virtual

Definition at line 857 of file MooseMesh.C.

858 {
859  return const_cast<Node &>(const_cast<const MooseMesh *>(this)->nodeRef(i));
860 }
virtual const Node & nodeRef(const dof_id_type i) const
Definition: MooseMesh.C:849
MooseMesh wraps a libMesh::Mesh object and enhances its capabilities by caching additional data and s...
Definition: MooseMesh.h:92

◆ nodeSetNodes()

const std::map< boundary_id_type, std::vector< dof_id_type > > & MooseMesh::nodeSetNodes ( ) const
inline
Returns
A map from nodeset ids to the vector of node ids in the nodeset

Definition at line 2228 of file MooseMesh.h.

2229 {
2230  return _node_set_nodes;
2231 }
std::map< boundary_id_type, std::vector< dof_id_type > > _node_set_nodes
list of nodes that belongs to a specified nodeset: indexing [nodeset_id] -> [array of node ids] ...
Definition: MooseMesh.h:1587

◆ nodeToActiveSemilocalElemMap()

const std::map< dof_id_type, std::vector< dof_id_type > > & MooseMesh::nodeToActiveSemilocalElemMap ( )

If not already created, creates a map from every node to all active semilocal elements to which they are connected.

Semilocal elements include local elements and elements that share at least one node with a local element.

Note
Extra ghosted elements are not included in this map!

Definition at line 1244 of file MooseMesh.C.

Referenced by FEProblemBase::initialSetup().

1245 {
1246  if (!_node_to_active_semilocal_elem_map_built) // Guard the creation with a double checked lock
1247  {
1248  Threads::spin_mutex::scoped_lock lock(Threads::spin_mtx);
1249 
1250  // This is allowing the timing to be run even with threads
1251  // This is safe because all threads will be waiting on this section when it runs
1252  // NOTE: Do not copy this construction to other places without thinking REALLY hard about it
1253  // The PerfGraph is NOT threadsafe and will cause all kinds of havok if care isn't taken
1255  Threads::in_threads = false;
1256  TIME_SECTION("nodeToActiveSemilocalElemMap", 5, "Building SemiLocalElemMap");
1258 
1260  {
1261  for (const auto & elem :
1262  as_range(getMesh().semilocal_elements_begin(), getMesh().semilocal_elements_end()))
1263  if (elem->active())
1264  for (unsigned int n = 0; n < elem->n_nodes(); n++)
1266 
1268  true; // MUST be set at the end for double-checked locking to work!
1269  }
1270  }
1271 
1273 }
bool _node_to_active_semilocal_elem_map_built
Definition: MooseMesh.h:1541
bool in_threads
dof_id_type id() const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
virtual unsigned int n_nodes() const=0
SimpleRange< IndexType > as_range(const std::pair< IndexType, IndexType > &p)
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139
bool active() const
dof_id_type node_id(const unsigned int i) const
std::map< dof_id_type, std::vector< dof_id_type > > _node_to_active_semilocal_elem_map
A map of all of the current nodes to the active elements that they are connected to.
Definition: MooseMesh.h:1540

◆ nodeToElemMap()

const std::map< dof_id_type, std::vector< dof_id_type > > & MooseMesh::nodeToElemMap ( )

If not already created, creates a map from every node to all elements to which they are connected.

Definition at line 1216 of file MooseMesh.C.

Referenced by NodalPatchRecovery::compute(), NodalPatchRecoveryAuxBase::computeValue(), ProjectionAux::computeValue(), PenetrationLocator::detectPenetration(), DMMooseGetEmbedding_Private(), ProjectionAux::elemOnNodeVariableIsDefinedOn(), NonlinearSystemBase::findImplicitGeometricCouplingEntries(), NearestNodeLocator::findNodes(), ElementSubdomainModifierBase::findReinitializedElemsAndNodes(), ElementSubdomainModifierBase::gatherPatchElements(), NodePositions::initialize(), ActivateElementsUserObjectBase::isNewlyActivated(), LinearNodalConstraint::LinearNodalConstraint(), ElementSubdomainModifierBase::nodeIsNewlyReinitialized(), GhostHigherDLowerDPointNeighbors::operator()(), EqualValueBoundaryConstraint::updateConstrainedNodes(), RandomData::updateGenerators(), and NearestNodeLocator::updatePatch().

1217 {
1218  if (!_node_to_elem_map_built) // Guard the creation with a double checked lock
1219  {
1220  Threads::spin_mutex::scoped_lock lock(Threads::spin_mtx);
1221 
1223  {
1224  // This is allowing the timing to be run even with threads
1225  // This is safe because all threads will be waiting on this section when it runs
1226  // NOTE: Do not copy this construction to other places without thinking REALLY hard about it
1227  // The PerfGraph is NOT threadsafe and will cause all kinds of havok if care isn't taken
1229  Threads::in_threads = false;
1230  TIME_SECTION("nodeToElemMap", 5, "Building Node To Elem Map");
1232 
1233  for (const auto & elem : getMesh().active_element_ptr_range())
1234  for (unsigned int n = 0; n < elem->n_nodes(); n++)
1235  _node_to_elem_map[elem->node_id(n)].push_back(elem->id());
1236 
1237  _node_to_elem_map_built = true; // MUST be set at the end for double-checked locking to work!
1238  }
1239  }
1240  return _node_to_elem_map;
1241 }
bool _node_to_elem_map_built
Definition: MooseMesh.h:1537
std::map< dof_id_type, std::vector< dof_id_type > > _node_to_elem_map
A map of all of the current nodes to the elements that they are connected to.
Definition: MooseMesh.h:1536
bool in_threads
dof_id_type id() const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
virtual unsigned int n_nodes() const=0
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139
dof_id_type node_id(const unsigned int i) const

◆ nPartitions()

virtual unsigned int MooseMesh::nPartitions ( ) const
inlinevirtual

Definition at line 332 of file MooseMesh.h.

332 { return _mesh->n_partitions(); }
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1459

◆ nSubdomains()

virtual SubdomainID MooseMesh::nSubdomains ( ) const
inlinevirtual

Reimplemented in MFEMMesh.

Definition at line 331 of file MooseMesh.h.

331 { return _mesh->n_subdomains(); }
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1459

◆ onMeshChanged()

void MooseMesh::onMeshChanged ( )
virtual

Declares a callback function that is executed at the conclusion of meshChanged().

Ther user can implement actions required after changing the mesh here.

Definition at line 923 of file MooseMesh.C.

Referenced by meshChanged().

924 {
925 }

◆ operator const libMesh::MeshBase &()

MooseMesh::operator const libMesh::MeshBase & ( ) const

Definition at line 3479 of file MooseMesh.C.

3479 { return getMesh(); }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488

◆ operator libMesh::MeshBase &()

MooseMesh::operator libMesh::MeshBase & ( )

Implicit conversion operator from MooseMesh -> libMesh::MeshBase.

Definition at line 3477 of file MooseMesh.C.

3477 { return getMesh(); }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488

◆ operator=()

MooseMesh& MooseMesh::operator= ( const MooseMesh other_mesh)
delete

◆ ownedElemInfoBegin()

MooseMesh::elem_info_iterator MooseMesh::ownedElemInfoBegin ( )

Iterators to owned faceInfo objects.

These faceInfo-s are required for the face loops and to filter out the faceInfo-s that are not owned by this processor in case we have a distributed mesh and we included FaceInfo objects that are on processor boundaries

Definition at line 1566 of file MooseMesh.C.

Referenced by LinearSystem::computeGradients(), LinearSystem::computeLinearSystemInternal(), and FEProblemBase::projectSolution().

1567 {
1568  return elem_info_iterator(_elem_info.begin(),
1569  _elem_info.end(),
1571 }
std::vector< const ElemInfo * > _elem_info
Holds only those ElemInfo objects that have processor_id equal to this process&#39;s id, e.g.
Definition: MooseMesh.h:1631

◆ ownedElemInfoEnd()

MooseMesh::elem_info_iterator MooseMesh::ownedElemInfoEnd ( )

Definition at line 1574 of file MooseMesh.C.

Referenced by LinearSystem::computeGradients(), LinearSystem::computeLinearSystemInternal(), and FEProblemBase::projectSolution().

1575 {
1576  return elem_info_iterator(_elem_info.end(),
1577  _elem_info.end(),
1579 }
std::vector< const ElemInfo * > _elem_info
Holds only those ElemInfo objects that have processor_id equal to this process&#39;s id, e.g.
Definition: MooseMesh.h:1631

◆ ownedFaceInfoBegin()

MooseMesh::face_info_iterator MooseMesh::ownedFaceInfoBegin ( )

Iterators to owned faceInfo objects.

These faceInfo-s are required for the face loops and to filter out the faceInfo-s that are not owned by this processor in case we have a distributed mesh and we included FaceInfo objects that are on processor boundaries

Definition at line 1548 of file MooseMesh.C.

Referenced by LinearSystem::computeGradients(), NonlinearSystemBase::computeJacobianInternal(), LinearSystem::computeLinearSystemInternal(), NonlinearSystemBase::computeResidualAndJacobianInternal(), and NonlinearSystemBase::computeResidualInternal().

1549 {
1550  return face_info_iterator(
1551  _face_info.begin(),
1552  _face_info.end(),
1554 }
std::vector< const FaceInfo * > _face_info
Holds only those FaceInfo objects that have processor_id equal to this process&#39;s id, e.g.
Definition: MooseMesh.h:1639
processor_id_type processor_id() const

◆ ownedFaceInfoEnd()

MooseMesh::face_info_iterator MooseMesh::ownedFaceInfoEnd ( )

Definition at line 1557 of file MooseMesh.C.

Referenced by LinearSystem::computeGradients(), NonlinearSystemBase::computeJacobianInternal(), LinearSystem::computeLinearSystemInternal(), NonlinearSystemBase::computeResidualAndJacobianInternal(), and NonlinearSystemBase::computeResidualInternal().

1558 {
1559  return face_info_iterator(
1560  _face_info.end(),
1561  _face_info.end(),
1563 }
std::vector< const FaceInfo * > _face_info
Holds only those FaceInfo objects that have processor_id equal to this process&#39;s id, e.g.
Definition: MooseMesh.h:1639
processor_id_type processor_id() const

◆ paramError()

template<typename... Args>
void MooseBase::paramError ( const std::string &  param,
Args...  args 
) const
inherited

Emits an error prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message.

If this object's parameters were not created directly by the Parser, then this function falls back to the normal behavior of mooseError - only printing a message using the given args.

Definition at line 439 of file MooseBase.h.

Referenced by HierarchicalGridPartitioner::_do_partition(), AutoCheckpointAction::act(), SetupDebugAction::act(), AddPeriodicBCAction::act(), CommonOutputAction::act(), DiffusionCG::addFEKernels(), DiffusionFV::addFVKernels(), NEML2ModelExecutor::addGatheredParameter(), NEML2ModelExecutor::addGatheredVariable(), ADDGKernel::ADDGKernel(), CylinderComponent::addMeshGenerators(), AddPeriodicBCAction::AddPeriodicBCAction(), ReporterPointSource::addPoints(), ADIntegratedBCTempl< T >::ADIntegratedBCTempl(), ADKernelTempl< T >::ADKernelTempl(), ADNodalKernel::ADNodalKernel(), ADPenaltyPeriodicSegmentalConstraint::ADPenaltyPeriodicSegmentalConstraint(), ADPeriodicSegmentalConstraint::ADPeriodicSegmentalConstraint(), AdvancedExtruderGenerator::AdvancedExtruderGenerator(), AdvectiveFluxAux::AdvectiveFluxAux(), ADVectorFunctionDirichletBC::ADVectorFunctionDirichletBC(), AnnularMesh::AnnularMesh(), AnnularMeshGenerator::AnnularMeshGenerator(), ArrayBodyForce::ArrayBodyForce(), ArrayDGKernel::ArrayDGKernel(), ArrayDGLowerDKernel::ArrayDGLowerDKernel(), ArrayDirichletBC::ArrayDirichletBC(), ArrayHFEMDirichletBC::ArrayHFEMDirichletBC(), ArrayIntegratedBC::ArrayIntegratedBC(), ArrayKernel::ArrayKernel(), ArrayLowerDIntegratedBC::ArrayLowerDIntegratedBC(), ArrayParsedAux::ArrayParsedAux(), ArrayPenaltyDirichletBC::ArrayPenaltyDirichletBC(), ArrayVacuumBC::ArrayVacuumBC(), ArrayVarReductionAux::ArrayVarReductionAux(), ParsedSubdomainIDsGenerator::assignElemSubdomainID(), AuxKernelTempl< Real >::AuxKernelTempl(), BatchMeshGeneratorAction::BatchMeshGeneratorAction(), BlockDeletionGenerator::BlockDeletionGenerator(), BlockWeightedPartitioner::BlockWeightedPartitioner(), BoundsBase::BoundsBase(), BreakMeshByBlockGenerator::BreakMeshByBlockGenerator(), BuildArrayVariableAux::BuildArrayVariableAux(), PiecewiseTabularBase::buildFromFile(), MFEMMesh::buildMesh(), CartesianGridDivision::CartesianGridDivision(), checkComponent(), MeshGenerator::checkGetMesh(), ComponentInitialConditionInterface::checkInitialConditionsAllRequested(), BatchMeshGeneratorAction::checkInputParameterType(), PhysicsBase::checkIntegrityEarly(), PostprocessorInterface::checkParam(), FEProblemBase::checkProblemIntegrity(), MultiAppReporterTransfer::checkSiblingsTransferSupported(), Coupleable::checkVar(), MultiAppTransfer::checkVariable(), CircularBoundaryCorrectionGenerator::CircularBoundaryCorrectionGenerator(), CircularBoundaryCorrectionGenerator::circularCenterCalculator(), MultiAppGeneralFieldTransfer::closestToPosition(), CoarsenBlockGenerator::CoarsenBlockGenerator(), CombinerGenerator::CombinerGenerator(), ComponentInitialConditionInterface::ComponentInitialConditionInterface(), ComponentMaterialPropertyInterface::ComponentMaterialPropertyInterface(), CompositionDT::CompositionDT(), FunctorAux::computeValue(), ConcentricCircleMeshGenerator::ConcentricCircleMeshGenerator(), LibtorchNeuralNetControl::conditionalParameterError(), ConservativeAdvectionBCTempl< false >::ConservativeAdvectionBCTempl(), ConservativeAdvectionTempl< is_ad >::ConservativeAdvectionTempl(), ConstantVectorPostprocessor::ConstantVectorPostprocessor(), ContainsPointAux::ContainsPointAux(), CopyValueAux::CopyValueAux(), Coupleable::Coupleable(), CoupledForceTempl< is_ad >::CoupledForceTempl(), CoupledValueFunctionMaterialTempl< is_ad >::CoupledValueFunctionMaterialTempl(), MultiApp::createApp(), MeshGeneratorSystem::createMeshGenerator(), CylindricalGridDivision::CylindricalGridDivision(), DebugResidualAux::DebugResidualAux(), ConstantReporter::declareConstantReporterValue(), ConstantReporter::declareConstantReporterValues(), AccumulateReporter::declareLateValues(), DefaultMultiAppFixedPointConvergence::DefaultMultiAppFixedPointConvergence(), DGKernel::DGKernel(), DGKernelBase::DGKernelBase(), DGLowerDKernel::DGLowerDKernel(), DiffusionFluxAux::DiffusionFluxAux(), DomainUserObject::DomainUserObject(), EigenProblem::EigenProblem(), Eigenvalue::Eigenvalue(), ElementAdaptivityLevelAux::ElementAdaptivityLevelAux(), ElementGroupCentroidPositions::ElementGroupCentroidPositions(), ElementLengthAux::ElementLengthAux(), ElementLpNormAux::ElementLpNormAux(), ExtraIDIntegralVectorPostprocessor::elementValue(), ElementValueSampler::ElementValueSampler(), ElementVectorL2Error::ElementVectorL2Error(), EqualValueEmbeddedConstraintTempl< is_ad >::EqualValueEmbeddedConstraintTempl(), ReporterPointSource::errorCheck(), StitchMeshGeneratorBase::errorMissingBoundary(), ExamplePatchMeshGenerator::ExamplePatchMeshGenerator(), MultiAppNearestNodeTransfer::execute(), MultiAppUserObjectTransfer::execute(), ExtraElementIDAux::ExtraElementIDAux(), ExtraElementIntegerDivision::ExtraElementIntegerDivision(), ExtraIDIntegralVectorPostprocessor::ExtraIDIntegralVectorPostprocessor(), FEProblemBase::FEProblemBase(), FEProblemSolve::FEProblemSolve(), FileMeshGenerator::FileMeshGenerator(), FillBetweenCurvesGenerator::FillBetweenCurvesGenerator(), FillBetweenSidesetsGenerator::FillBetweenSidesetsGenerator(), ReporterPointSource::fillPoint(), SpatialUserObjectVectorPostprocessor::fillPoints(), CombinerGenerator::fillPositions(), MultiApp::fillPositions(), InternalSideIndicatorBase::finalize(), ForcingFunctionAux::ForcingFunctionAux(), FullSolveMultiApp::FullSolveMultiApp(), FunctionArrayAux::FunctionArrayAux(), FunctionValuePostprocessor::FunctionValuePostprocessor(), FunctorADConverterTempl< T >::FunctorADConverterTempl(), FunctorAux::FunctorAux(), FunctorBinnedValuesDivision::FunctorBinnedValuesDivision(), FunctorCoordinatesFunctionAux::FunctorCoordinatesFunctionAux(), FunctorElementalGradientAuxTempl< is_ad >::FunctorElementalGradientAuxTempl(), FunctorExtremaPositions::FunctorExtremaPositions(), FunctorIC::FunctorIC(), FunctorPositions::FunctorPositions(), FunctorVectorElementalAuxTempl< is_ad >::FunctorVectorElementalAuxTempl(), FVAdvection::FVAdvection(), FVFluxBC::FVFluxBC(), FVInterfaceKernel::FVInterfaceKernel(), FVOneVarDiffusionInterface::FVOneVarDiffusionInterface(), FVTwoVarContinuityConstraint::FVTwoVarContinuityConstraint(), Boundary2DDelaunayGenerator::General2DDelaunay(), BoundaryDeletionGenerator::generate(), UniqueExtraIDMeshGenerator::generate(), AddMetaDataGenerator::generate(), BlockToMeshConverterGenerator::generate(), BreakBoundaryOnSubdomainGenerator::generate(), ElementsToTetrahedronsConverter::generate(), ExtraNodesetGenerator::generate(), FillBetweenCurvesGenerator::generate(), FillBetweenSidesetsGenerator::generate(), LowerDBlockFromSidesetGenerator::generate(), PlaneIDMeshGenerator::generate(), RenameBlockGenerator::generate(), RenameBoundaryGenerator::generate(), BlockDeletionGenerator::generate(), Boundary2DDelaunayGenerator::generate(), BoundaryElementConversionGenerator::generate(), BreakMeshByBlockGenerator::generate(), CoarsenBlockGenerator::generate(), FlipSidesetGenerator::generate(), GeneratedMeshGenerator::generate(), ParsedSubdomainGeneratorBase::generate(), RefineBlockGenerator::generate(), RefineSidesetGenerator::generate(), SideSetsFromNodeSetsGenerator::generate(), CombinerGenerator::generate(), AdvancedExtruderGenerator::generate(), BreakMeshByElementGenerator::generate(), CircularBoundaryCorrectionGenerator::generate(), MeshCollectionGenerator::generate(), MeshExtruderGenerator::generate(), ParsedCurveGenerator::generate(), ParsedExtraElementIDGenerator::generate(), StackGenerator::generate(), XYZDelaunayGenerator::generate(), CutMeshByLevelSetGeneratorBase::generate(), XYDelaunayGenerator::generate(), XYMeshLineCutter::generate(), PatternedMeshGenerator::generate(), SubdomainBoundingBoxGenerator::generate(), GeneratedMeshGenerator::GeneratedMeshGenerator(), GenericConstantStdVectorMaterialTempl< is_ad >::GenericConstantStdVectorMaterialTempl(), GenericFunctorGradientMaterialTempl< is_ad >::GenericFunctorGradientMaterialTempl(), GenericFunctorMaterialTempl< is_ad >::GenericFunctorMaterialTempl(), GenericFunctorTimeDerivativeMaterialTempl< is_ad >::GenericFunctorTimeDerivativeMaterialTempl(), GenericVectorFunctorMaterialTempl< is_ad >::GenericVectorFunctorMaterialTempl(), PropertyReadFile::getBlockData(), ComponentBoundaryConditionInterface::getBoundaryCondition(), MultiApp::getCommandLineArgs(), PropertyReadFile::getData(), PropertyReadFile::getFileNames(), Sampler::getGlobalSamples(), ComponentInitialConditionInterface::getInitialCondition(), NEML2Action::getInputParameterMapping(), MultiAppNearestNodeTransfer::getLocalEntitiesAndComponents(), Sampler::getLocalSamples(), MeshGenerator::getMeshGeneratorNameFromParam(), MeshGenerator::getMeshGeneratorNamesFromParam(), Sampler::getNextLocalRow(), FEProblemSolve::getParamFromNonlinearSystemVectorParam(), PostprocessorInterface::getPostprocessorNameInternal(), PostprocessorInterface::getPostprocessorValueInternal(), MultiAppNearestNodeTransfer::getTargetLocalNodes(), UserObjectInterface::getUserObjectBase(), UserObjectInterface::getUserObjectName(), HFEMDirichletBC::HFEMDirichletBC(), AddVariableAction::init(), MultiApp::init(), DistributedPositions::initialize(), BlockWeightedPartitioner::initialize(), BlockRestrictable::initializeBlockRestrictable(), BoundaryRestrictable::initializeBoundaryRestrictable(), PhysicsBase::initializePhysics(), JSONOutput::initialSetup(), MultiAppCloneReporterTransfer::initialSetup(), SolutionIC::initialSetup(), SideFVFluxBCIntegral::initialSetup(), MultiAppVariableValueSamplePostprocessorTransfer::initialSetup(), MultiAppGeneralFieldNearestLocationTransfer::initialSetup(), MultiAppDofCopyTransfer::initialSetup(), HistogramVectorPostprocessor::initialSetup(), ReferenceResidualConvergence::initialSetup(), PiecewiseConstantFromCSV::initialSetup(), LibtorchControlValuePostprocessor::initialSetup(), MultiAppGeneralFieldTransfer::initialSetup(), ElementSubdomainModifierBase::initialSetup(), SampledOutput::initSample(), AddMetaDataGenerator::inputChecker(), IntegratedBC::IntegratedBC(), InterfaceDiffusiveFluxIntegralTempl< is_ad >::InterfaceDiffusiveFluxIntegralTempl(), InterfaceValueUserObjectAux::InterfaceValueUserObjectAux(), InternalSideIndicatorBase::InternalSideIndicatorBase(), InterpolatedStatefulMaterialTempl< T >::InterpolatedStatefulMaterialTempl(), InversePowerMethod::InversePowerMethod(), IterationAdaptiveDT::IterationAdaptiveDT(), MultiApp::keepSolutionDuringRestore(), Kernel::Kernel(), KokkosBoundNodalKernel< KokkosUpperBoundNodalKernel >::KokkosBoundNodalKernel(), LibtorchNeuralNetControl::LibtorchNeuralNetControl(), LinearCombinationFunction::LinearCombinationFunction(), LinearFVAdvectionDiffusionFunctorRobinBC::LinearFVAdvectionDiffusionFunctorRobinBC(), LowerDIntegratedBC::LowerDIntegratedBC(), PNGOutput::makeMeshFunc(), MatCoupledForce::MatCoupledForce(), MaterialADConverterTempl< T >::MaterialADConverterTempl(), MaterialFunctorConverterTempl< T >::MaterialFunctorConverterTempl(), MatrixSymmetryCheck::MatrixSymmetryCheck(), PatternedMeshGenerator::mergeSubdomainNameMaps(), MeshCollectionGenerator::MeshCollectionGenerator(), MeshDiagnosticsGenerator::MeshDiagnosticsGenerator(), MeshDivisionAux::MeshDivisionAux(), MeshGenerator::MeshGenerator(), MeshGeneratorComponent::MeshGeneratorComponent(), MFEMGenericFunctorMaterial::MFEMGenericFunctorMaterial(), MFEMGenericFunctorVectorMaterial::MFEMGenericFunctorVectorMaterial(), MooseLinearVariableFV< Real >::MooseLinearVariableFV(), UserObjectInterface::mooseObjectError(), MoosePreconditioner::MoosePreconditioner(), MooseStaticCondensationPreconditioner::MooseStaticCondensationPreconditioner(), MooseVariableBase::MooseVariableBase(), MortarConstraintBase::MortarConstraintBase(), MortarNodalAuxKernelTempl< ComputeValueType >::MortarNodalAuxKernelTempl(), MultiApp::moveApp(), MoveNodeGenerator::MoveNodeGenerator(), MultiApp::MultiApp(), MultiAppCloneReporterTransfer::MultiAppCloneReporterTransfer(), MultiAppGeneralFieldNearestLocationTransfer::MultiAppGeneralFieldNearestLocationTransfer(), MultiAppGeneralFieldShapeEvaluationTransfer::MultiAppGeneralFieldShapeEvaluationTransfer(), MultiAppGeneralFieldTransfer::MultiAppGeneralFieldTransfer(), MultiAppGeneralFieldUserObjectTransfer::MultiAppGeneralFieldUserObjectTransfer(), MultiAppGeometricInterpolationTransfer::MultiAppGeometricInterpolationTransfer(), MultiAppNearestNodeTransfer::MultiAppNearestNodeTransfer(), MultiAppPostprocessorInterpolationTransfer::MultiAppPostprocessorInterpolationTransfer(), MultiAppPostprocessorToAuxScalarTransfer::MultiAppPostprocessorToAuxScalarTransfer(), MultiAppPostprocessorTransfer::MultiAppPostprocessorTransfer(), MultiAppProjectionTransfer::MultiAppProjectionTransfer(), MultiAppReporterTransfer::MultiAppReporterTransfer(), MultiAppScalarToAuxScalarTransfer::MultiAppScalarToAuxScalarTransfer(), MultiAppShapeEvaluationTransfer::MultiAppShapeEvaluationTransfer(), MultiAppTransfer::MultiAppTransfer(), MultiAppUserObjectTransfer::MultiAppUserObjectTransfer(), MultiAppVariableValueSamplePostprocessorTransfer::MultiAppVariableValueSamplePostprocessorTransfer(), MultiAppVariableValueSampleTransfer::MultiAppVariableValueSampleTransfer(), MultiAppVectorPostprocessorTransfer::MultiAppVectorPostprocessorTransfer(), MultiSystemSolveObject::MultiSystemSolveObject(), NearestNodeValueAux::NearestNodeValueAux(), NEML2Action::NEML2Action(), NestedDivision::NestedDivision(), NodalBC::NodalBC(), NodalEqualValueConstraint::NodalEqualValueConstraint(), NodalKernel::NodalKernel(), NodalPatchRecoveryAux::NodalPatchRecoveryAux(), NodalValueSampler::NodalValueSampler(), Output::Output(), ParsedCurveGenerator::ParsedCurveGenerator(), ParsedFunctorMaterialTempl< is_ad >::ParsedFunctorMaterialTempl(), ParsedPostprocessor::ParsedPostprocessor(), PatternedMeshGenerator::PatternedMeshGenerator(), PenaltyPeriodicSegmentalConstraint::PenaltyPeriodicSegmentalConstraint(), PeriodicSegmentalConstraint::PeriodicSegmentalConstraint(), PIDTransientControl::PIDTransientControl(), PlaneDeletionGenerator::PlaneDeletionGenerator(), PlaneIDMeshGenerator::PlaneIDMeshGenerator(), PointwiseRenormalizeVector::PointwiseRenormalizeVector(), PolyLineMeshGenerator::PolyLineMeshGenerator(), ReporterInterface::possiblyCheckHasReporter(), VectorPostprocessorInterface::possiblyCheckHasVectorPostprocessor(), LibmeshPartitioner::prepareBlocksForSubdomainPartitioner(), ProjectedMaterialPropertyNodalPatchRecoveryAux::ProjectedMaterialPropertyNodalPatchRecoveryAux(), ProjectionAux::ProjectionAux(), PropertyReadFile::PropertyReadFile(), RandomIC::RandomIC(), MultiApp::readCommandLineArguments(), PropertyReadFile::readData(), SolutionUserObjectBase::readXda(), ReferenceResidualConvergence::ReferenceResidualConvergence(), RefineBlockGenerator::RefineBlockGenerator(), RefineSidesetGenerator::RefineSidesetGenerator(), RenameBlockGenerator::RenameBlockGenerator(), RenameBoundaryGenerator::RenameBoundaryGenerator(), ReporterPointSource::ReporterPointSource(), FEProblemBase::restoreSolutions(), SecondTimeDerivativeAux::SecondTimeDerivativeAux(), FEProblemBase::setLinearConvergenceNames(), FEProblemBase::setNonlinearConvergenceNames(), setPartitioner(), NodeSetsGeneratorBase::setup(), SideSetsGeneratorBase::setup(), NEML2Action::setupDerivativeMappings(), NEML2Action::setupParameterDerivativeMappings(), SidesetAroundSubdomainUpdater::SidesetAroundSubdomainUpdater(), SideSetsFromBoundingBoxGenerator::SideSetsFromBoundingBoxGenerator(), SideValueSampler::SideValueSampler(), SingleRankPartitioner::SingleRankPartitioner(), SphericalGridDivision::SphericalGridDivision(), StitchBoundaryMeshGenerator::StitchBoundaryMeshGenerator(), StitchMeshGenerator::StitchMeshGenerator(), SymmetryTransformGenerator::SymmetryTransformGenerator(), TagVectorAux::TagVectorAux(), Terminator::Terminator(), TimeDerivativeAux::TimeDerivativeAux(), Transfer::Transfer(), TransformGenerator::TransformGenerator(), TransientMultiApp::TransientMultiApp(), ParsedCurveGenerator::tSectionSpaceDefiner(), UniqueExtraIDMeshGenerator::UniqueExtraIDMeshGenerator(), TimeSequenceStepperBase::updateSequence(), UserObject::UserObject(), Checkpoint::validateExecuteOn(), ParsedAux::validateGenericVectorNames(), ParsedMaterialBase::validateVectorNames(), FunctorIC::value(), VariableCondensationPreconditioner::VariableCondensationPreconditioner(), VectorBodyForce::VectorBodyForce(), VectorFunctionDirichletBC::VectorFunctionDirichletBC(), VectorFunctionIC::VectorFunctionIC(), VolumeAux::VolumeAux(), WebServerControl::WebServerControl(), XYDelaunayGenerator::XYDelaunayGenerator(), XYMeshLineCutter::XYMeshLineCutter(), and XYZDelaunayGenerator::XYZDelaunayGenerator().

440 {
441  _pars.paramError(param, std::forward<Args>(args)...);
442 }
const InputParameters & _pars
The object&#39;s parameters.
Definition: MooseBase.h:366
void paramError(const std::string &param, Args... args) const
Emits a parameter error prefixed with the parameter location and object information if available...

◆ parameters()

const InputParameters& MooseBase::parameters ( ) const
inlineinherited

Get the parameters of the object.

Returns
The parameters of the object

Definition at line 131 of file MooseBase.h.

Referenced by MeshOnlyAction::act(), SplitMeshAction::act(), SetupDebugAction::act(), AddActionComponentAction::act(), CommonOutputAction::act(), Action::Action(), FEProblemBase::addAnyRedistributers(), MFEMProblem::addAuxKernel(), FEProblemBase::addAuxKernel(), FEProblemBase::addAuxScalarKernel(), MFEMProblem::addAuxVariable(), DisplacedProblem::addAuxVariable(), MFEMProblem::addBoundaryCondition(), FEProblemBase::addBoundaryCondition(), FEProblemBase::addConstraint(), FEProblemBase::addConvergence(), FEProblemBase::addDamper(), AddDefaultConvergenceAction::addDefaultMultiAppFixedPointConvergence(), FEProblemBase::addDefaultMultiAppFixedPointConvergence(), ReferenceResidualProblem::addDefaultNonlinearConvergence(), AddDefaultConvergenceAction::addDefaultNonlinearConvergence(), FEProblemBase::addDefaultNonlinearConvergence(), AddDefaultConvergenceAction::addDefaultSteadyStateConvergence(), FEProblemBase::addDefaultSteadyStateConvergence(), FEProblemBase::addDGKernel(), FEProblemBase::addDiracKernel(), FEProblemBase::addDistribution(), MFEMProblem::addFESpace(), MFEMProblem::addFunction(), FEProblemBase::addFunction(), MFEMProblem::addFunctorMaterial(), FEProblemBase::addFunctorMaterial(), FEProblemBase::addFVBC(), FEProblemBase::addFVInitialCondition(), FEProblemBase::addFVInterfaceKernel(), FEProblemBase::addFVKernel(), MFEMProblem::addGridFunction(), FEProblemBase::addHDGKernel(), FEProblemBase::addIndicator(), MFEMProblem::addInitialCondition(), FEProblemBase::addInitialCondition(), DiffusionPhysicsBase::addInitialConditions(), FEProblemBase::addInterfaceKernel(), FEProblemBase::addInterfaceMaterial(), MFEMProblem::addKernel(), FEProblemBase::addKernel(), FEProblemBase::addLinearFVBC(), FEProblemBase::addLinearFVKernel(), FEProblem::addLineSearch(), FEProblemBase::addMarker(), FEProblemBase::addMaterial(), FEProblemBase::addMaterialHelper(), FEProblemBase::addMeshDivision(), MFEMProblem::addMFEMFESpaceFromMOOSEVariable(), MFEMProblem::addMFEMPreconditioner(), MFEMProblem::addMFEMSolver(), FEProblemBase::addMultiApp(), FEProblemBase::addNodalKernel(), FEProblemBase::addObject(), FEProblemBase::addObjectParamsHelper(), FEProblemBase::addOutput(), MFEMProblem::addPostprocessor(), FEProblemBase::addPostprocessor(), FEProblemBase::addPredictor(), FEProblemBase::addReporter(), FEProblemBase::addSampler(), FEProblemBase::addScalarKernel(), MFEMProblem::addSubMesh(), FEProblemBase::addTimeIntegrator(), MFEMProblem::addTransfer(), FEProblemBase::addTransfer(), FEProblemBase::addUserObject(), MFEMProblem::addVariable(), DisplacedProblem::addVariable(), FEProblemBase::addVectorPostprocessor(), ADPiecewiseLinearInterpolationMaterial::ADPiecewiseLinearInterpolationMaterial(), AdvancedOutput::AdvancedOutput(), ADVectorFunctionDirichletBC::ADVectorFunctionDirichletBC(), AnnularMesh::AnnularMesh(), AnnularMeshGenerator::AnnularMeshGenerator(), Action::associateWithParameter(), AuxKernelTempl< Real >::AuxKernelTempl(), AuxScalarKernel::AuxScalarKernel(), BoundsBase::BoundsBase(), buildTypedMesh(), PostprocessorInterface::checkParam(), AddDefaultConvergenceAction::checkUnusedMultiAppFixedPointConvergenceParameters(), AddDefaultConvergenceAction::checkUnusedNonlinearConvergenceParameters(), AddDefaultConvergenceAction::checkUnusedSteadyStateConvergenceParameters(), SampledOutput::cloneMesh(), LibtorchNeuralNetControl::conditionalParameterError(), Console::Console(), CommonOutputAction::create(), MultiApp::createApp(), Postprocessor::declareValue(), DumpObjectsProblem::deduceNecessaryParameters(), DefaultMultiAppFixedPointConvergence::DefaultMultiAppFixedPointConvergence(), DumpObjectsProblem::dumpObjectHelper(), DumpObjectsProblem::DumpObjectsProblem(), EigenProblem::EigenProblem(), Eigenvalue::Eigenvalue(), ElementMaterialSampler::ElementMaterialSampler(), ExamplePatchMeshGenerator::ExamplePatchMeshGenerator(), Executor::Executor(), Exodus::Exodus(), ElementSubdomainModifierBase::extrapolatePolynomial(), FEProblem::FEProblem(), FixedPointSolve::FixedPointSolve(), FunctorSmootherTempl< T >::FunctorSmootherTempl(), GapValueAux::GapValueAux(), ParsedSubdomainGeneratorBase::generate(), ActionWarehouse::getCurrentActionName(), ExecutorInterface::getExecutor(), Material::getMaterial(), ReporterInterface::getReporterName(), Reporter::getReporterValueName(), UserObjectInterface::getUserObjectName(), VectorPostprocessorInterface::getVectorPostprocessorName(), GhostingUserObject::GhostingUserObject(), MeshGeneratorSystem::hasDataDrivenAllowed(), AttribSystem::initFrom(), AttribDisplaced::initFrom(), BlockRestrictable::initializeBlockRestrictable(), FullSolveMultiApp::initialSetup(), FEProblemBase::initNullSpaceVectors(), InterfaceDiffusiveFluxIntegralTempl< is_ad >::InterfaceDiffusiveFluxIntegralTempl(), InterfaceIntegralVariableValuePostprocessor::InterfaceIntegralVariableValuePostprocessor(), InterfaceKernelTempl< T >::InterfaceKernelTempl(), MooseObject::isKokkosObject(), isValid(), IterationAdaptiveDT::IterationAdaptiveDT(), LibtorchNeuralNetControl::LibtorchNeuralNetControl(), MFEMCGSolver::MFEMCGSolver(), MFEMGMRESSolver::MFEMGMRESSolver(), MFEMHypreADS::MFEMHypreADS(), MFEMHypreAMS::MFEMHypreAMS(), MFEMHypreBoomerAMG::MFEMHypreBoomerAMG(), MFEMHypreFGMRES::MFEMHypreFGMRES(), MFEMHypreGMRES::MFEMHypreGMRES(), MFEMHyprePCG::MFEMHyprePCG(), MFEMOperatorJacobiSmoother::MFEMOperatorJacobiSmoother(), MFEMSuperLU::MFEMSuperLU(), MooseObject::MooseObject(), UserObjectInterface::mooseObjectError(), MooseVariableInterface< Real >::MooseVariableInterface(), MultiApp::MultiApp(), MultiAppGeneralFieldTransfer::MultiAppGeneralFieldTransfer(), MultiAppGeneralFieldUserObjectTransfer::MultiAppGeneralFieldUserObjectTransfer(), MultiAppTransfer::MultiAppTransfer(), MultiAppVariableValueSamplePostprocessorTransfer::MultiAppVariableValueSamplePostprocessorTransfer(), NodeFaceConstraint::NodeFaceConstraint(), ConsoleUtils::outputLegacyInformation(), OverlayMeshGenerator::OverlayMeshGenerator(), MooseServer::parseDocumentForDiagnostics(), PenetrationAux::PenetrationAux(), PiecewiseBilinear::PiecewiseBilinear(), PiecewiseLinearInterpolationMaterial::PiecewiseLinearInterpolationMaterial(), NEML2Action::printSummary(), ProjectedStatefulMaterialStorageAction::processProperty(), PropertyReadFile::PropertyReadFile(), PseudoTimestep::PseudoTimestep(), RandomIC::RandomIC(), ReferenceResidualConvergence::ReferenceResidualConvergence(), InputParameterWarehouse::removeInputParameters(), FEProblem::setInputParametersFEProblem(), FEProblemBase::setInputParametersFEProblem(), FEProblemBase::setResidualObjectParamsAndLog(), SideSetsGeneratorBase::setup(), NonlinearSystemBase::shouldEvaluatePreSMOResidual(), SideSetsFromBoundingBoxGenerator::SideSetsFromBoundingBoxGenerator(), Moose::PetscSupport::storePetscOptions(), DumpObjectsProblem::stringifyParameters(), TaggingInterface::TaggingInterface(), Transfer::Transfer(), TransientBase::TransientBase(), VectorBodyForce::VectorBodyForce(), VectorFunctionDirichletBC::VectorFunctionDirichletBC(), VectorFunctionIC::VectorFunctionIC(), VectorMagnitudeFunctorMaterialTempl< is_ad >::VectorMagnitudeFunctorMaterialTempl(), and MooseApp::~MooseApp().

131 { return _pars; }
const InputParameters & _pars
The object&#39;s parameters.
Definition: MooseBase.h:366

◆ paramInfo()

template<typename... Args>
void MooseBase::paramInfo ( const std::string &  param,
Args...  args 
) const
inherited

Emits an informational message prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message.

If this object's parameters were not created directly by the Parser, then this function falls back to the normal behavior of mooseInfo - only printing a message using the given args.

Definition at line 453 of file MooseBase.h.

Referenced by GridPartitioner::_do_partition(), ComboMarker::ComboMarker(), Control::Control(), FunctorIC::FunctorIC(), and TransientMultiApp::TransientMultiApp().

454 {
455  mooseInfo(_pars.paramMessage(param, std::forward<Args>(args)...));
456 }
std::string paramMessage(const std::string &param, Args... args) const
void mooseInfo(Args &&... args) const
Definition: MooseBase.h:321
const InputParameters & _pars
The object&#39;s parameters.
Definition: MooseBase.h:366

◆ paramWarning()

template<typename... Args>
void MooseBase::paramWarning ( const std::string &  param,
Args...  args 
) const
inherited

Emits a warning prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message.

If this object's parameters were not created directly by the Parser, then this function falls back to the normal behavior of mooseWarning - only printing a message using the given args.

Definition at line 446 of file MooseBase.h.

Referenced by GridPartitioner::_do_partition(), MultiAppTransfer::checkParentAppUserObjectExecuteOn(), EigenProblem::checkProblemIntegrity(), CombinerGenerator::copyIntoMesh(), DefaultMultiAppFixedPointConvergence::DefaultMultiAppFixedPointConvergence(), MultiAppNearestNodeTransfer::execute(), FEProblemSolve::FEProblemSolve(), UniqueExtraIDMeshGenerator::generate(), PlaneIDMeshGenerator::generate(), Terminator::initialSetup(), SampledOutput::initSample(), MooseMesh(), FEProblemBase::setPreserveMatrixSparsityPattern(), and Terminator::Terminator().

447 {
448  mooseWarning(_pars.paramMessage(param, std::forward<Args>(args)...));
449 }
std::string paramMessage(const std::string &param, Args... args) const
const InputParameters & _pars
The object&#39;s parameters.
Definition: MooseBase.h:366
void mooseWarning(Args &&... args) const
Emits a warning prefixed with object name and type.
Definition: MooseBase.h:299

◆ partitionerName()

const MooseEnum& MooseMesh::partitionerName ( ) const
inline

Definition at line 1032 of file MooseMesh.h.

1032 { return _partitioner_name; }
MooseEnum _partitioner_name
The partitioner used on this mesh.
Definition: MooseMesh.h:1467

◆ partitioning()

MooseEnum MooseMesh::partitioning ( )
static

returns MooseMesh partitioning options so other classes can use it

Definition at line 3938 of file MooseMesh.C.

3939 {
3940  MooseEnum partitioning("default=-3 metis=-2 parmetis=-1 linear=0 centroid hilbert_sfc morton_sfc",
3941  "default");
3942  return partitioning;
3943 }
This is a "smart" enum class intended to replace many of the shortcomings in the C++ enum type It sho...
Definition: MooseEnum.h:33
static MooseEnum partitioning()
returns MooseMesh partitioning options so other classes can use it
Definition: MooseMesh.C:3938

◆ perfGraph()

PerfGraph & PerfGraphInterface::perfGraph ( )
inherited

Get the PerfGraph.

Definition at line 78 of file PerfGraphInterface.C.

Referenced by CommonOutputAction::act(), PerfGraphData::finalize(), and PerfGraphOutput::output().

79 {
80  return _pg_moose_app.perfGraph();
81 }
MooseApp & _pg_moose_app
The MooseApp that owns the PerfGraph.
PerfGraph & perfGraph()
Get the PerfGraph for this app.
Definition: MooseApp.h:173

◆ prepare()

bool MooseMesh::prepare ( const MeshBase mesh_to_clone)

Calls prepare_for_use() if the underlying MeshBase object isn't prepared, then communicates various boundary information on parallel meshes.

Also calls update() internally. Instead of calling prepare_for_use on the currently held MeshBase object, a mesh_to_clone can be provided. If it is provided (e.g. this method is given a non-null argument), then _mesh will be assigned a clone of the mesh_to_clone. The provided mesh_to_clone must already be prepared

Parameters
mesh_to_cloneIf nonnull, we will clone this mesh instead of preparing our current one
Returns
Whether the libMesh mesh was prepared. This should really only be relevant in MOOSE framework contexts where we need to make a decision about what to do with the displaced mesh. If the reference mesh base object has prepare_for_use called (e.g. this method returns true when called for the reference mesh), then we must pass the reference mesh base object into this method when we call this for the displaced mesh. This is because the displaced mesh must be an exact clone of the reference mesh. We have seen that prepare_for_use called on two previously identical meshes can result in two different meshes even with Metis partitioning

Definition at line 419 of file MooseMesh.C.

420 {
421  TIME_SECTION("prepare", 2, "Preparing Mesh", true);
422 
423  bool called_prepare_for_use = false;
424 
425  mooseAssert(_mesh, "The MeshBase has not been constructed");
426 
427  if (!dynamic_cast<DistributedMesh *>(&getMesh()) || _is_nemesis)
428  // For whatever reason we do not want to allow renumbering here nor ever in the future?
429  getMesh().allow_renumbering(false);
430 
431  if (mesh_to_clone)
432  {
433  mooseAssert(mesh_to_clone->is_prepared(),
434  "The mesh we wish to clone from must already be prepared");
435  _mesh = mesh_to_clone->clone();
436  _moose_mesh_prepared = false;
437  }
438  else if (!_mesh->is_prepared())
439  {
440  _mesh->prepare_for_use();
441  _moose_mesh_prepared = false;
442  called_prepare_for_use = true;
443  }
444 
446  return called_prepare_for_use;
447 
448  // Collect (local) subdomain IDs
449  _mesh_subdomains.clear();
450  for (const auto & elem : getMesh().element_ptr_range())
452 
453  // add explicitly requested subdomains
454  if (isParamValid("add_subdomain_ids") && !isParamValid("add_subdomain_names"))
455  {
456  // only subdomain ids are explicitly given
457  const auto & add_subdomain_id = getParam<std::vector<SubdomainID>>("add_subdomain_ids");
458  _mesh_subdomains.insert(add_subdomain_id.begin(), add_subdomain_id.end());
459  }
460  else if (isParamValid("add_subdomain_ids") && isParamValid("add_subdomain_names"))
461  {
462  const auto add_subdomain =
463  getParam<SubdomainID, SubdomainName>("add_subdomain_ids", "add_subdomain_names");
464  for (const auto & [sub_id, sub_name] : add_subdomain)
465  {
466  // add subdomain id
467  _mesh_subdomains.insert(sub_id);
468  // set name of the subdomain just added
469  setSubdomainName(sub_id, sub_name);
470  }
471  }
472  else if (isParamValid("add_subdomain_names"))
473  {
474  // the user has defined add_subdomain_names, but not add_subdomain_ids
475  const auto & add_subdomain_names = getParam<std::vector<SubdomainName>>("add_subdomain_names");
476 
477  // to define subdomain ids, we need the largest subdomain id defined yet.
478  subdomain_id_type offset = 0;
479  if (!_mesh_subdomains.empty())
480  offset = *_mesh_subdomains.rbegin();
481 
482  // add all subdomains (and auto-assign ids)
483  for (const SubdomainName & sub_name : add_subdomain_names)
484  {
485  // to avoid two subdomains with the same ID (notably on recover)
487  continue;
488  const auto sub_id = ++offset;
489  // add subdomain id
490  _mesh_subdomains.insert(sub_id);
491  // set name of the subdomain just added
492  setSubdomainName(sub_id, sub_name);
493  }
494  }
495 
496  // Make sure nodesets have been generated
498 
499  // Collect (local) boundary IDs
500  const std::set<BoundaryID> & local_bids = getMesh().get_boundary_info().get_boundary_ids();
501  _mesh_boundary_ids.insert(local_bids.begin(), local_bids.end());
502 
503  const std::set<BoundaryID> & local_node_bids =
505  _mesh_nodeset_ids.insert(local_node_bids.begin(), local_node_bids.end());
506 
507  const std::set<BoundaryID> & local_side_bids =
509  _mesh_sideset_ids.insert(local_side_bids.begin(), local_side_bids.end());
510 
511  // Add explicitly requested sidesets/nodesets
512  // This is done *after* the side boundaries (e.g. "right", ...) have been generated.
513  auto add_sets = [this](const bool sidesets, auto & set_ids)
514  {
515  const std::string type = sidesets ? "sideset" : "nodeset";
516  const std::string id_param = "add_" + type + "_ids";
517  const std::string name_param = "add_" + type + "_names";
518 
519  if (isParamValid(id_param))
520  {
521  const auto & add_ids = getParam<std::vector<BoundaryID>>(id_param);
522  _mesh_boundary_ids.insert(add_ids.begin(), add_ids.end());
523  set_ids.insert(add_ids.begin(), add_ids.end());
525  {
526  const auto & add_names = getParam<std::vector<BoundaryName>>(name_param);
527  mooseAssert(add_names.size() == add_ids.size(),
528  "Id and name sets must be the same size when adding.");
529  for (const auto i : index_range(add_ids))
530  setBoundaryName(add_ids[i], add_names[i]);
531  }
532  }
533  else if (isParamValid(name_param))
534  {
535  // the user has defined names, but not ids
536  const auto & add_names = getParam<std::vector<BoundaryName>>(name_param);
537 
538  auto & mesh_ids = sidesets ? _mesh_sideset_ids : _mesh_nodeset_ids;
539 
540  // to define ids, we need the largest id defined yet.
541  boundary_id_type offset = 0;
542  if (!mesh_ids.empty())
543  offset = *mesh_ids.rbegin();
544  if (!_mesh_boundary_ids.empty())
545  offset = std::max(offset, *_mesh_boundary_ids.rbegin());
546 
547  // add all sidesets/nodesets (and auto-assign ids)
548  for (const auto & name : add_names)
549  {
550  // to avoid two sets with the same ID (notably on recover)
552  continue;
553  const auto id = ++offset;
554  // add sideset id
555  _mesh_boundary_ids.insert(id);
556  set_ids.insert(id);
557  // set name of the sideset just added
558  setBoundaryName(id, name);
559  }
560  }
561  };
562 
563  add_sets(true, _mesh_sideset_ids);
564  add_sets(false, _mesh_nodeset_ids);
565 
566  // Communicate subdomain and boundary IDs if this is a parallel mesh
567  if (!getMesh().is_serial())
568  {
573  }
574 
576  {
577  if (!_coord_system_set)
578  setCoordSystem(_provided_coord_blocks, getParam<MultiMooseEnum>("coord_type"));
579  else if (_pars.isParamSetByUser("coord_type"))
580  mooseError(
581  "Trying to set coordinate system type information based on the user input file, but "
582  "the coordinate system type information has already been set programmatically! "
583  "Either remove your coordinate system type information from the input file, or contact "
584  "your application developer");
585  }
586 
587  // Set general axisymmetric axes if provided
588  if (isParamValid("rz_coord_blocks") && isParamValid("rz_coord_origins") &&
589  isParamValid("rz_coord_directions"))
590  {
591  const auto rz_coord_blocks = getParam<std::vector<SubdomainName>>("rz_coord_blocks");
592  const auto rz_coord_origins = getParam<std::vector<Point>>("rz_coord_origins");
593  const auto rz_coord_directions = getParam<std::vector<RealVectorValue>>("rz_coord_directions");
594  if (rz_coord_origins.size() == rz_coord_blocks.size() &&
595  rz_coord_directions.size() == rz_coord_blocks.size())
596  {
597  std::vector<std::pair<Point, RealVectorValue>> rz_coord_axes;
598  for (unsigned int i = 0; i < rz_coord_origins.size(); ++i)
599  rz_coord_axes.push_back(std::make_pair(rz_coord_origins[i], rz_coord_directions[i]));
600 
601  setGeneralAxisymmetricCoordAxes(rz_coord_blocks, rz_coord_axes);
602 
603  if (isParamSetByUser("rz_coord_axis"))
604  mooseError("The parameter 'rz_coord_axis' may not be provided if 'rz_coord_blocks', "
605  "'rz_coord_origins', and 'rz_coord_directions' are provided.");
606  }
607  else
608  mooseError("The parameters 'rz_coord_blocks', 'rz_coord_origins', and "
609  "'rz_coord_directions' must all have the same size.");
610  }
611  else if (isParamValid("rz_coord_blocks") || isParamValid("rz_coord_origins") ||
612  isParamValid("rz_coord_directions"))
613  mooseError("If any of the parameters 'rz_coord_blocks', 'rz_coord_origins', and "
614  "'rz_coord_directions' are provided, then all must be provided.");
615 
617 
618  update();
619 
620  // Check if there is subdomain name duplication for the same subdomain ID
622 
623  _moose_mesh_prepared = true;
624 
625  return called_prepare_for_use;
626 }
const std::set< boundary_id_type > & get_side_boundary_ids() const
bool _is_nemesis
True if a Nemesis Mesh was read in.
Definition: MooseMesh.h:1500
static const std::string name_param
The name of the parameter that contains the object name.
Definition: MooseBase.h:55
std::vector< SubdomainName > _provided_coord_blocks
Set for holding user-provided coordinate system type block names.
Definition: MooseMesh.h:1917
bool is_prepared() const
const InputParameters & _pars
The object&#39;s parameters.
Definition: MooseBase.h:366
void checkDuplicateSubdomainNames()
Loop through all subdomain IDs and check if there is name duplication used for the subdomains with sa...
Definition: MooseMesh.C:4377
void allow_renumbering(bool allow)
const BoundaryID INVALID_BOUNDARY_ID
Definition: MooseTypes.C:22
const Parallel::Communicator & _communicator
const BoundaryInfo & get_boundary_info() const
virtual std::unique_ptr< MeshBase > clone() const=0
void buildNodeListFromSideList()
Calls BoundaryInfo::build_node_list_from_side_list().
Definition: MooseMesh.C:3023
auto max(const L &left, const R &right)
const std::set< boundary_id_type > & get_node_boundary_ids() const
static const subdomain_id_type invalid_subdomain_id
const std::string & name() const
Get the name of the class.
Definition: MooseBase.h:103
bool _built_from_other_mesh
Whether or not this mesh was built from another mesh.
Definition: MooseMesh.h:1445
int8_t boundary_id_type
void setSubdomainName(SubdomainID subdomain_id, const SubdomainName &name)
This method sets the name for subdomain_id to name.
Definition: MooseMesh.C:1787
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
void update()
Calls buildNodeListFromSideList(), buildNodeList(), and buildBndElemList().
Definition: MooseMesh.C:629
const std::string & type() const
Get the type of this class.
Definition: MooseBase.h:93
std::set< BoundaryID > _mesh_nodeset_ids
Definition: MooseMesh.h:1557
void setCoordSystem(const std::vector< SubdomainName > &blocks, const MultiMooseEnum &coord_sys)
Set the coordinate system for the provided blocks to coord_sys.
Definition: MooseMesh.C:4121
std::set< BoundaryID > _mesh_boundary_ids
A set of boundary IDs currently present in the mesh.
Definition: MooseMesh.h:1555
bool _moose_mesh_prepared
True if prepare has been called on the mesh.
Definition: MooseMesh.h:1503
bool _coord_system_set
Whether the coordinate system has been set.
Definition: MooseMesh.h:1914
const std::set< boundary_id_type > & get_boundary_ids() const
bool isParamSetByUser(const std::string &name) const
Method returns true if the parameter was set by the user.
void setBoundaryName(BoundaryID boundary_id, BoundaryName name)
This method sets the boundary name of the boundary based on the id parameter.
Definition: MooseMesh.C:1818
std::set< BoundaryID > _mesh_sideset_ids
Definition: MooseMesh.h:1556
void setGeneralAxisymmetricCoordAxes(const std::vector< SubdomainName > &blocks, const std::vector< std::pair< Point, RealVectorValue >> &axes)
Sets the general coordinate axes for axisymmetric blocks.
Definition: MooseMesh.C:4261
bool detectOrthogonalDimRanges(Real tol=1e-6)
This routine determines whether the Mesh is a regular orthogonal mesh (i.e.
Definition: MooseMesh.C:1963
subdomain_id_type subdomain_id() const
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1459
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139
bool isParamValid(const std::string &name) const
Test if the supplied parameter is valid.
Definition: MooseBase.h:199
std::set< SubdomainID > _mesh_subdomains
A set of subdomain IDs currently present in the mesh.
Definition: MooseMesh.h:1547
bool isParamSetByUser(const std::string &name) const
Test if the supplied parameter is set by a user, as opposed to not set or set to default.
Definition: MooseBase.h:205
auto index_range(const T &sizable)
BoundaryID getBoundaryID(const BoundaryName &boundary_name) const
Get the associated BoundaryID for the boundary name.
Definition: MooseMesh.C:1730
SubdomainID getSubdomainID(const SubdomainName &subdomain_name) const
Get the associated subdomain ID for the subdomain name.
Definition: MooseMesh.C:1769
void set_union(T &data, const unsigned int root_id) const

◆ prepared() [1/2]

bool MooseMesh::prepared ( ) const

Setter/getter for whether the mesh is prepared.

Definition at line 3177 of file MooseMesh.C.

Referenced by needsPrepareForUse(), GeneratedMesh::prepared(), and AnnularMesh::prepared().

3178 {
3179  return _mesh->is_prepared() && _moose_mesh_prepared;
3180 }
bool _moose_mesh_prepared
True if prepare has been called on the mesh.
Definition: MooseMesh.h:1503
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1459

◆ prepared() [2/2]

void MooseMesh::prepared ( bool  state)
virtual

If we are explicitly setting the mesh to not prepared, then we've likely modified the mesh and can no longer make assumptions about orthogonality. We really should recheck.

Reimplemented in AnnularMesh, and GeneratedMesh.

Definition at line 3183 of file MooseMesh.C.

3184 {
3185  if (state)
3186  mooseError("We don't have any right to tell the libmesh mesh that it *is* prepared. Only a "
3187  "call to prepare_for_use should tell us that");
3188 
3189  // Some people may call this even before we have a MeshBase object. This isn't dangerous really
3190  // because when the MeshBase object is born, it knows it's in an unprepared state
3191  if (_mesh)
3192  _mesh->set_isnt_prepared();
3193 
3194  // If the libMesh mesh isn't preparead, then our MooseMesh wrapper is also no longer prepared
3195  _moose_mesh_prepared = false;
3196 
3201  _regular_orthogonal_mesh = false;
3202 }
bool _moose_mesh_prepared
True if prepare has been called on the mesh.
Definition: MooseMesh.h:1503
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1459
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271
bool _regular_orthogonal_mesh
Boolean indicating whether this mesh was detected to be regular and orthogonal.
Definition: MooseMesh.h:1608

◆ printInfo()

void MooseMesh::printInfo ( std::ostream &  os = libMesh::out,
const unsigned int  verbosity = 0 
) const

Calls print_info() on the underlying Mesh.

Definition at line 3502 of file MooseMesh.C.

Referenced by Adaptivity::adaptMesh().

3503 {
3504  os << '\n';
3505  getMesh().print_info(os, verbosity);
3506  os << std::flush;
3507 }
std::basic_ostream< charT, traits > * os
Definition: InfixIterator.h:33
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
void print_info(std::ostream &os=libMesh::out, const unsigned int verbosity=0, const bool global=true) const

◆ queryElemPtr() [1/2]

Elem * MooseMesh::queryElemPtr ( const dof_id_type  i)
virtual

Definition at line 3165 of file MooseMesh.C.

Referenced by PointSamplerBase::getLocalElemContainingPoint(), NodePositions::initialize(), ElementalVariableValue::initialSetup(), DisplacedProblem::reinitElemPhys(), FEProblemBase::reinitElemPhys(), and EqualValueBoundaryConstraint::updateConstrainedNodes().

3166 {
3167  return getMesh().query_elem_ptr(i);
3168 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
virtual const Elem * query_elem_ptr(const dof_id_type i) const=0

◆ queryElemPtr() [2/2]

const Elem * MooseMesh::queryElemPtr ( const dof_id_type  i) const
virtual

Definition at line 3171 of file MooseMesh.C.

3172 {
3173  return getMesh().query_elem_ptr(i);
3174 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
virtual const Elem * query_elem_ptr(const dof_id_type i) const=0

◆ queryNodePtr() [1/2]

const Node * MooseMesh::queryNodePtr ( const dof_id_type  i) const
virtual

Definition at line 875 of file MooseMesh.C.

Referenced by NonlinearSystemBase::findImplicitGeometricCouplingEntries(), NodePositions::initialize(), nodeRef(), queryNodePtr(), and EqualValueBoundaryConstraint::updateConstrainedNodes().

876 {
877  if (i > getMesh().max_node_id())
878  {
879  auto it = _quadrature_nodes.find(i);
880  if (it == _quadrature_nodes.end())
881  return nullptr;
882  auto & node_ptr = it->second;
883  mooseAssert(node_ptr, "Uninitialized quadrature node");
884  return node_ptr;
885  }
886 
887  return getMesh().query_node_ptr(i);
888 }
std::map< dof_id_type, Node * > _quadrature_nodes
Definition: MooseMesh.h:1578
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
virtual const Node * query_node_ptr(const dof_id_type i) const=0

◆ queryNodePtr() [2/2]

Node * MooseMesh::queryNodePtr ( const dof_id_type  i)
virtual

Definition at line 891 of file MooseMesh.C.

892 {
893  return const_cast<Node *>(const_cast<const MooseMesh *>(this)->queryNodePtr(i));
894 }
virtual const Node * queryNodePtr(const dof_id_type i) const
Definition: MooseMesh.C:875
MooseMesh wraps a libMesh::Mesh object and enhances its capabilities by caching additional data and s...
Definition: MooseMesh.h:92

◆ queryParam()

template<typename T >
const T * MooseBase::queryParam ( const std::string &  name) const
inherited

Query a parameter for the object.

If the parameter is not valid, nullptr will be returned

Parameters
nameThe name of the parameter
Returns
A pointer to the parameter value, if it exists

Definition at line 395 of file MooseBase.h.

396 {
397  return isParamValid(name) ? &getParam<T>(name) : nullptr;
398 }
const std::string & name() const
Get the name of the class.
Definition: MooseBase.h:103
bool isParamValid(const std::string &name) const
Test if the supplied parameter is valid.
Definition: MooseBase.h:199

◆ refinedElementRange()

ConstElemPointerRange * MooseMesh::refinedElementRange ( ) const

Return a range that is suitable for threaded execution over elements that were just refined.

Returns
The Parent elements that are now set to be INACTIVE. Their children are the new elements.

Definition at line 946 of file MooseMesh.C.

Referenced by FEProblemBase::meshChanged().

947 {
948  return _refined_elements.get();
949 }
std::unique_ptr< ConstElemPointerRange > _refined_elements
The elements that were just refined.
Definition: MooseMesh.h:1506

◆ registerTimedSection() [1/2]

PerfID PerfGraphInterface::registerTimedSection ( const std::string &  section_name,
const unsigned int  level 
) const
protectedinherited

Call to register a named section for timing.

Parameters
section_nameThe name of the code section to be timed
levelThe importance of the timer - lower is more important (0 will always come out)
Returns
The ID of the section - use when starting timing

Definition at line 53 of file PerfGraphInterface.C.

55 {
56  const auto timed_section_name = timedSectionName(section_name);
57  if (!moose::internal::getPerfGraphRegistry().sectionExists(timed_section_name))
58  return moose::internal::getPerfGraphRegistry().registerSection(timed_section_name, level);
59  else
60  return moose::internal::getPerfGraphRegistry().sectionID(timed_section_name);
61 }
PerfID registerSection(const std::string &section_name, const unsigned int level)
Call to register a named section for timing.
std::string timedSectionName(const std::string &section_name) const
PerfID sectionID(const std::string &section_name) const
Given a name return the PerfID The name of the section.
PerfGraphRegistry & getPerfGraphRegistry()
Get the global PerfGraphRegistry singleton.

◆ registerTimedSection() [2/2]

PerfID PerfGraphInterface::registerTimedSection ( const std::string &  section_name,
const unsigned int  level,
const std::string &  live_message,
const bool  print_dots = true 
) const
protectedinherited

Call to register a named section for timing.

Parameters
section_nameThe name of the code section to be timed
levelThe importance of the timer - lower is more important (0 will always come out)
live_messageThe message to be printed to the screen during execution
print_dotsWhether or not progress dots should be printed for this section
Returns
The ID of the section - use when starting timing

Definition at line 64 of file PerfGraphInterface.C.

68 {
69  const auto timed_section_name = timedSectionName(section_name);
70  if (!moose::internal::getPerfGraphRegistry().sectionExists(timed_section_name))
72  timedSectionName(section_name), level, live_message, print_dots);
73  else
74  return moose::internal::getPerfGraphRegistry().sectionID(timed_section_name);
75 }
PerfID registerSection(const std::string &section_name, const unsigned int level)
Call to register a named section for timing.
std::string timedSectionName(const std::string &section_name) const
PerfID sectionID(const std::string &section_name) const
Given a name return the PerfID The name of the section.
PerfGraphRegistry & getPerfGraphRegistry()
Get the global PerfGraphRegistry singleton.

◆ restartableName()

std::string Restartable::restartableName ( const std::string &  data_name) const
protectedinherited

Gets the name of a piece of restartable data given a data name, adding the system name and object name prefix.

This should only be used in this interface and in testing.

Definition at line 78 of file Restartable.C.

Referenced by Restartable::declareRecoverableData(), and Restartable::declareRestartableDataHelper().

79 {
80  return _restartable_system_name + "/" + _restartable_name + "/" + data_name;
81 }
std::string _restartable_name
The name of the object.
Definition: Restartable.h:250
const std::string _restartable_system_name
The system name this object is in.
Definition: Restartable.h:237

◆ safeClone()

virtual std::unique_ptr<MooseMesh> MooseMesh::safeClone ( ) const
pure virtual

A safer version of the clone() method that hands back an allocated object wrapped in a smart pointer.

This makes it much less likely that the caller will leak the memory in question.

Implemented in MFEMMesh, PatternedMesh, StitchedMesh, MeshGeneratorMesh, AnnularMesh, ConcentricCircleMesh, GeneratedMesh, RinglebMesh, SpiralAnnularMesh, ImageMesh, FileMesh, and TiledMesh.

Referenced by SetupMeshAction::act(), and SampledOutput::cloneMesh().

◆ setAxisymmetricCoordAxis()

void MooseMesh::setAxisymmetricCoordAxis ( const MooseEnum rz_coord_axis)

For axisymmetric simulations, set the symmetry coordinate axis.

For r in the x-direction, z in the y-direction the coordinate axis would be y

Definition at line 4253 of file MooseMesh.C.

Referenced by FEProblemBase::setAxisymmetricCoordAxis().

4254 {
4255  _rz_coord_axis = rz_coord_axis;
4256 
4258 }
void updateCoordTransform()
Update the coordinate transformation object based on our coordinate system data.
Definition: MooseMesh.C:4325
unsigned int _rz_coord_axis
Storage for RZ axis selection.
Definition: MooseMesh.h:1904

◆ setBoundaryName()

void MooseMesh::setBoundaryName ( BoundaryID  boundary_id,
BoundaryName  name 
)

This method sets the boundary name of the boundary based on the id parameter.

Definition at line 1818 of file MooseMesh.C.

Referenced by prepare(), and ActivateElementsUserObjectBase::setNewBoundayName().

1819 {
1820  BoundaryInfo & boundary_info = getMesh().get_boundary_info();
1821 
1822  // We need to figure out if this boundary is a sideset or nodeset
1823  if (boundary_info.get_side_boundary_ids().count(boundary_id))
1824  boundary_info.sideset_name(boundary_id) = name;
1825  else
1826  boundary_info.nodeset_name(boundary_id) = name;
1827 }
const std::set< boundary_id_type > & get_side_boundary_ids() const
std::string & nodeset_name(boundary_id_type id)
const BoundaryInfo & get_boundary_info() const
const std::string & name() const
Get the name of the class.
Definition: MooseBase.h:103
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
std::string & sideset_name(boundary_id_type id)

◆ setBoundaryToNormalMap() [1/2]

void MooseMesh::setBoundaryToNormalMap ( std::unique_ptr< std::map< BoundaryID, RealVectorValue >>  boundary_map)

Sets the mapping between BoundaryID and normal vector Is called by AddAllSideSetsByNormals.

Definition at line 3241 of file MooseMesh.C.

3243 {
3244  _boundary_to_normal_map = std::move(boundary_map);
3245 }
std::unique_ptr< std::map< BoundaryID, RealVectorValue > > _boundary_to_normal_map
The boundary to normal map - valid only when AddAllSideSetsByNormals is active.
Definition: MooseMesh.h:1561

◆ setBoundaryToNormalMap() [2/2]

void MooseMesh::setBoundaryToNormalMap ( std::map< BoundaryID, RealVectorValue > *  boundary_map)

Definition at line 3248 of file MooseMesh.C.

3249 {
3250  mooseDeprecated("setBoundaryToNormalMap(std::map<BoundaryID, RealVectorValue> * boundary_map) is "
3251  "deprecated, use the unique_ptr version instead");
3252  _boundary_to_normal_map.reset(boundary_map);
3253 }
std::unique_ptr< std::map< BoundaryID, RealVectorValue > > _boundary_to_normal_map
The boundary to normal map - valid only when AddAllSideSetsByNormals is active.
Definition: MooseMesh.h:1561
void mooseDeprecated(Args &&... args) const
Definition: MooseBase.h:314

◆ setCoordData()

void MooseMesh::setCoordData ( const MooseMesh other_mesh)

Set the coordinate system data to that of other_mesh.

Definition at line 4362 of file MooseMesh.C.

Referenced by DisplacedProblem::DisplacedProblem().

4363 {
4364  _coord_sys = other_mesh._coord_sys;
4365  _rz_coord_axis = other_mesh._rz_coord_axis;
4367 }
std::map< SubdomainID, Moose::CoordinateSystemType > & _coord_sys
Type of coordinate system per subdomain.
Definition: MooseMesh.h:1901
std::unordered_map< SubdomainID, std::pair< Point, RealVectorValue > > _subdomain_id_to_rz_coord_axis
Map of subdomain ID to general axisymmetric axis.
Definition: MooseMesh.h:1907
unsigned int _rz_coord_axis
Storage for RZ axis selection.
Definition: MooseMesh.h:1904

◆ setCoordSystem()

void MooseMesh::setCoordSystem ( const std::vector< SubdomainName > &  blocks,
const MultiMooseEnum coord_sys 
)

Set the coordinate system for the provided blocks to coord_sys.

Definition at line 4121 of file MooseMesh.C.

Referenced by prepare(), and FEProblemBase::setCoordSystem().

4123 {
4124  TIME_SECTION("setCoordSystem", 5, "Setting Coordinate System");
4126  {
4127  const std::string param_name = isParamValid("coord_block") ? "coord_block" : "block";
4128  mooseWarning("Supplied blocks in the 'setCoordSystem' method do not match the value of the "
4129  "'Mesh/",
4130  param_name,
4131  "' parameter. Did you provide different parameter values for 'Mesh/",
4132  param_name,
4133  "' and 'Problem/block'?. We will honor the parameter value from 'Mesh/",
4134  param_name,
4135  "'");
4136  mooseAssert(_coord_system_set,
4137  "If we are arriving here due to a bad specification in the Problem block, then we "
4138  "should have already set our coordinate system subdomains from the Mesh block");
4139  return;
4140  }
4141  if (_pars.isParamSetByUser("coord_type") && getParam<MultiMooseEnum>("coord_type") != coord_sys)
4142  mooseError("Supplied coordinate systems in the 'setCoordSystem' method do not match the value "
4143  "of the 'Mesh/coord_type' parameter. Did you provide different parameter values for "
4144  "'coord_type' to 'Mesh' and 'Problem'?");
4145 
4146  // If blocks contain ANY_BLOCK_ID, it should be the only block specified, and coord_sys should
4147  // have one and only one entry. In that case, the same coordinate system will be set for all
4148  // subdomains.
4149  if (blocks.size() == 1 && blocks[0] == "ANY_BLOCK_ID")
4150  {
4151  if (coord_sys.size() > 1)
4152  mooseError("If you specify ANY_BLOCK_ID as the only block, you must also specify a single "
4153  "coordinate system for it.");
4154  if (!_mesh->is_prepared())
4155  mooseError(
4156  "You cannot set the coordinate system for ANY_BLOCK_ID before the mesh is prepared. "
4157  "Please call this method after the mesh is prepared.");
4158  const auto coord_type = coord_sys.size() == 0
4160  : Moose::stringToEnum<Moose::CoordinateSystemType>(coord_sys[0]);
4161  for (const auto sid : meshSubdomains())
4162  _coord_sys[sid] = coord_type;
4163  return;
4164  }
4165 
4166  // If multiple blocks are specified, but one of them is ANY_BLOCK_ID, let's emit a helpful error
4167  if (std::find(blocks.begin(), blocks.end(), "ANY_BLOCK_ID") != blocks.end())
4168  mooseError("You cannot specify ANY_BLOCK_ID together with other blocks in the "
4169  "setCoordSystem() method. If you want to set the same coordinate system for all "
4170  "blocks, use ANY_BLOCK_ID as the only block.");
4171 
4172  auto subdomains = meshSubdomains();
4173  // It's possible that a user has called this API before the mesh is prepared and consequently we
4174  // don't yet have the subdomains in meshSubdomains()
4175  for (const auto & sub_name : blocks)
4176  {
4177  const auto sub_id = getSubdomainID(sub_name);
4178  subdomains.insert(sub_id);
4179  }
4180 
4181  if (coord_sys.size() <= 1)
4182  {
4183  // We will specify the same coordinate system for all blocks
4184  const auto coord_type = coord_sys.size() == 0
4186  : Moose::stringToEnum<Moose::CoordinateSystemType>(coord_sys[0]);
4187  for (const auto sid : subdomains)
4188  _coord_sys[sid] = coord_type;
4189  }
4190  else
4191  {
4192  if (blocks.size() != coord_sys.size())
4193  mooseError("Number of blocks and coordinate systems does not match.");
4194 
4195  for (const auto i : index_range(blocks))
4196  {
4197  SubdomainID sid = getSubdomainID(blocks[i]);
4198  Moose::CoordinateSystemType coord_type =
4199  Moose::stringToEnum<Moose::CoordinateSystemType>(coord_sys[i]);
4200  _coord_sys[sid] = coord_type;
4201  }
4202 
4203  for (const auto & sid : subdomains)
4204  if (_coord_sys.find(sid) == _coord_sys.end())
4205  mooseError("Subdomain '" + Moose::stringify(sid) +
4206  "' does not have a coordinate system specified.");
4207  }
4208 
4209  _coord_system_set = true;
4210 
4212 }
std::vector< SubdomainName > _provided_coord_blocks
Set for holding user-provided coordinate system type block names.
Definition: MooseMesh.h:1917
KOKKOS_INLINE_FUNCTION const T * find(const T &target, const T *const begin, const T *const end)
Find a value in an array.
Definition: KokkosUtils.h:30
const InputParameters & _pars
The object&#39;s parameters.
Definition: MooseBase.h:366
char ** blocks
std::map< SubdomainID, Moose::CoordinateSystemType > & _coord_sys
Type of coordinate system per subdomain.
Definition: MooseMesh.h:1901
unsigned int size() const
Return the number of active items in the MultiMooseEnum.
void updateCoordTransform()
Update the coordinate transformation object based on our coordinate system data.
Definition: MooseMesh.C:4325
std::string stringify(const T &t)
conversion to string
Definition: Conversion.h:64
bool _coord_system_set
Whether the coordinate system has been set.
Definition: MooseMesh.h:1914
bool isParamSetByUser(const std::string &name) const
Method returns true if the parameter was set by the user.
CoordinateSystemType
Definition: MooseTypes.h:810
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1459
void mooseWarning(Args &&... args) const
Emits a warning prefixed with object name and type.
Definition: MooseBase.h:299
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271
bool isParamValid(const std::string &name) const
Test if the supplied parameter is valid.
Definition: MooseBase.h:199
auto index_range(const T &sizable)
const std::set< SubdomainID > & meshSubdomains() const
Returns a read-only reference to the set of subdomains currently present in the Mesh.
Definition: MooseMesh.C:3211
SubdomainID getSubdomainID(const SubdomainName &subdomain_name) const
Get the associated subdomain ID for the subdomain name.
Definition: MooseMesh.C:1769

◆ setCustomPartitioner()

void MooseMesh::setCustomPartitioner ( libMesh::Partitioner partitioner)

Setter for custom partitioner.

Definition at line 3739 of file MooseMesh.C.

3740 {
3741  _custom_partitioner = partitioner->clone();
3742 }
virtual std::unique_ptr< Partitioner > clone() const=0
std::unique_ptr< libMesh::Partitioner > _custom_partitioner
The custom partitioner.
Definition: MooseMesh.h:1471

◆ setGeneralAxisymmetricCoordAxes()

void MooseMesh::setGeneralAxisymmetricCoordAxes ( const std::vector< SubdomainName > &  blocks,
const std::vector< std::pair< Point, RealVectorValue >> &  axes 
)

Sets the general coordinate axes for axisymmetric blocks.

This method must be used if any of the following are true:

  • There are multiple axisymmetric coordinate systems
  • Any axisymmetric coordinate system axis/direction is not the +X or +Y axis
  • Any axisymmetric coordinate system does not start at (0,0,0)
Parameters
[in]blocksSubdomain names
[in]axesPair of values defining the axisymmetric coordinate axis for each subdomain. The first value is the point on the axis corresponding to the origin. The second value is the direction vector of the axis (normalization not necessary).

Definition at line 4261 of file MooseMesh.C.

Referenced by prepare().

4264 {
4265  // Set the axes for the given blocks
4266  mooseAssert(blocks.size() == axes.size(), "Blocks and axes vectors must be the same length.");
4267  for (const auto i : index_range(blocks))
4268  {
4269  const auto subdomain_id = getSubdomainID(blocks[i]);
4270  const auto it = _coord_sys.find(subdomain_id);
4271  if (it == _coord_sys.end())
4272  mooseError("The block '",
4273  blocks[i],
4274  "' has not set a coordinate system. Make sure to call setCoordSystem() before "
4275  "setGeneralAxisymmetricCoordAxes().");
4276  else
4277  {
4278  if (it->second == Moose::COORD_RZ)
4279  {
4280  const auto direction = axes[i].second;
4281  if (direction.is_zero())
4282  mooseError("Only nonzero vectors may be supplied for RZ directions.");
4283 
4284  _subdomain_id_to_rz_coord_axis[subdomain_id] =
4285  std::make_pair(axes[i].first, direction.unit());
4286  }
4287  else
4288  mooseError("The block '",
4289  blocks[i],
4290  "' was provided in setGeneralAxisymmetricCoordAxes(), but the coordinate system "
4291  "for this block is not 'RZ'.");
4292  }
4293  }
4294 
4295  // Make sure there are no RZ blocks that still do not have axes
4296  const auto all_subdomain_ids = meshSubdomains();
4297  for (const auto subdomain_id : all_subdomain_ids)
4298  if (getCoordSystem(subdomain_id) == Moose::COORD_RZ &&
4299  !_subdomain_id_to_rz_coord_axis.count(subdomain_id))
4300  mooseError("The block '",
4301  getSubdomainName(subdomain_id),
4302  "' was specified to use the 'RZ' coordinate system but was not given in "
4303  "setGeneralAxisymmetricCoordAxes().");
4304 
4306 }
char ** blocks
std::map< SubdomainID, Moose::CoordinateSystemType > & _coord_sys
Type of coordinate system per subdomain.
Definition: MooseMesh.h:1901
const std::string & getSubdomainName(SubdomainID subdomain_id) const
Return the name of a block given an id.
Definition: MooseMesh.C:1801
void updateCoordTransform()
Update the coordinate transformation object based on our coordinate system data.
Definition: MooseMesh.C:4325
const std::map< SubdomainID, Moose::CoordinateSystemType > & getCoordSystem() const
Get the map from subdomain ID to coordinate system type, e.g.
Definition: MooseMesh.C:4247
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271
std::unordered_map< SubdomainID, std::pair< Point, RealVectorValue > > _subdomain_id_to_rz_coord_axis
Map of subdomain ID to general axisymmetric axis.
Definition: MooseMesh.h:1907
auto index_range(const T &sizable)
const std::set< SubdomainID > & meshSubdomains() const
Returns a read-only reference to the set of subdomains currently present in the Mesh.
Definition: MooseMesh.C:3211
SubdomainID getSubdomainID(const SubdomainName &subdomain_name) const
Get the associated subdomain ID for the subdomain name.
Definition: MooseMesh.C:1769

◆ setGhostedBoundaryInflation()

void MooseMesh::setGhostedBoundaryInflation ( const std::vector< Real > &  inflation)

This sets the inflation amount for the bounding box for each partition for use in ghosting boundaries.

Definition at line 3275 of file MooseMesh.C.

3276 {
3277  _ghosted_boundaries_inflation = inflation;
3278 }
std::vector< Real > _ghosted_boundaries_inflation
Definition: MooseMesh.h:1590

◆ setIsCustomPartitionerRequested()

void MooseMesh::setIsCustomPartitionerRequested ( bool  cpr)

Definition at line 3767 of file MooseMesh.C.

3768 {
3770 }
bool _custom_partitioner_requested
Definition: MooseMesh.h:1472

◆ setMeshBase()

void MooseMesh::setMeshBase ( std::unique_ptr< MeshBase mesh_base)

Method to set the mesh_base object.

If this method is NOT called prior to calling init(), a MeshBase object will be automatically constructed and set.

Definition at line 2906 of file MooseMesh.C.

2907 {
2908  _mesh = std::move(mesh_base);
2909  _mesh->allow_remote_element_removal(_allow_remote_element_removal);
2910 }
bool _allow_remote_element_removal
Whether to allow removal of remote elements.
Definition: MooseMesh.h:1859
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1459

◆ setMeshBoundaryIDs()

void MooseMesh::setMeshBoundaryIDs ( std::set< BoundaryID boundary_IDs)

Sets the set of BoundaryIDs Is called by AddAllSideSetsByNormals.

Definition at line 3235 of file MooseMesh.C.

3236 {
3237  _mesh_boundary_ids = boundary_IDs;
3238 }
std::set< BoundaryID > _mesh_boundary_ids
A set of boundary IDs currently present in the mesh.
Definition: MooseMesh.h:1555

◆ setParallelType()

void MooseMesh::setParallelType ( ParallelType  parallel_type)
inline

Allow to change parallel type.

Definition at line 2187 of file MooseMesh.h.

Referenced by buildTypedMesh().

2188 {
2189  _parallel_type = parallel_type;
2191 }
ParallelType _parallel_type
Can be set to DISTRIBUTED, REPLICATED, or DEFAULT.
Definition: MooseMesh.h:1449
void determineUseDistributedMesh()
Determine whether to use a distributed mesh.
Definition: MooseMesh.C:2866

◆ setPartitioner()

void MooseMesh::setPartitioner ( MeshBase mesh_base,
MooseEnum partitioner,
bool  use_distributed_mesh,
const InputParameters params,
MooseObject context_obj 
)
static

Method for setting the partitioner on the passed in mesh_base object.

Definition at line 3680 of file MooseMesh.C.

Referenced by setPartitionerHelper().

3685 {
3686  // Set the partitioner based on partitioner name
3687  switch (partitioner)
3688  {
3689  case -3: // default
3690  // We'll use the default partitioner, but notify the user of which one is being used...
3691  if (use_distributed_mesh)
3692  partitioner = "parmetis";
3693  else
3694  partitioner = "metis";
3695  break;
3696 
3697  // No need to explicitily create the metis or parmetis partitioners,
3698  // They are the default for serial and parallel mesh respectively
3699  case -2: // metis
3700  case -1: // parmetis
3701  break;
3702 
3703  case 0: // linear
3704  mesh_base.partitioner().reset(new libMesh::LinearPartitioner);
3705  break;
3706  case 1: // centroid
3707  {
3708  if (!params.isParamValid("centroid_partitioner_direction"))
3709  context_obj.paramError(
3710  "centroid_partitioner_direction",
3711  "If using the centroid partitioner you _must_ specify centroid_partitioner_direction!");
3712 
3713  MooseEnum direction = params.get<MooseEnum>("centroid_partitioner_direction");
3714 
3715  if (direction == "x")
3716  mesh_base.partitioner().reset(
3718  else if (direction == "y")
3719  mesh_base.partitioner().reset(
3721  else if (direction == "z")
3722  mesh_base.partitioner().reset(
3724  else if (direction == "radial")
3725  mesh_base.partitioner().reset(
3727  break;
3728  }
3729  case 2: // hilbert_sfc
3730  mesh_base.partitioner().reset(new libMesh::HilbertSFCPartitioner);
3731  break;
3732  case 3: // morton_sfc
3733  mesh_base.partitioner().reset(new libMesh::MortonSFCPartitioner);
3734  break;
3735  }
3736 }
void paramError(const std::string &param, Args... args) const
Emits an error prefixed with the file and line number of the given param (from the input file) along ...
Definition: MooseBase.h:439
std::vector< std::pair< R1, R2 > > get(const std::string &param1, const std::string &param2) const
Combine two vector parameters into a single vector of pairs.
virtual std::unique_ptr< Partitioner > & partitioner()
This is a "smart" enum class intended to replace many of the shortcomings in the C++ enum type It sho...
Definition: MooseEnum.h:33
bool isParamValid(const std::string &name) const
This method returns parameters that have been initialized in one fashion or another, i.e.

◆ setPartitionerHelper()

void MooseMesh::setPartitionerHelper ( MeshBase mesh = nullptr)
protected

Definition at line 3668 of file MooseMesh.C.

Referenced by buildTypedMesh().

3669 {
3670  if (_use_distributed_mesh && (_partitioner_name != "default" && _partitioner_name != "parmetis"))
3671  {
3672  _partitioner_name = "parmetis";
3673  _partitioner_overridden = true;
3674  }
3675 
3677 }
const InputParameters & _pars
The object&#39;s parameters.
Definition: MooseBase.h:366
static void setPartitioner(MeshBase &mesh_base, MooseEnum &partitioner, bool use_distributed_mesh, const InputParameters &params, MooseObject &context_obj)
Method for setting the partitioner on the passed in mesh_base object.
Definition: MooseMesh.C:3680
MooseEnum _partitioner_name
The partitioner used on this mesh.
Definition: MooseMesh.h:1467
bool _use_distributed_mesh
False by default.
Definition: MooseMesh.h:1454
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
bool _partitioner_overridden
Definition: MooseMesh.h:1468

◆ setPatchUpdateStrategy()

void MooseMesh::setPatchUpdateStrategy ( Moose::PatchUpdateType  patch_update_strategy)

Set the patch size update strategy.

Definition at line 3447 of file MooseMesh.C.

3448 {
3449  _patch_update_strategy = patch_update_strategy;
3450 }
Moose::PatchUpdateType _patch_update_strategy
The patch update strategy.
Definition: MooseMesh.h:1602

◆ setSubdomainName() [1/2]

void MooseMesh::setSubdomainName ( SubdomainID  subdomain_id,
const SubdomainName &  name 
)

This method sets the name for subdomain_id to name.

Definition at line 1787 of file MooseMesh.C.

Referenced by MooseMesh(), and prepare().

1788 {
1789  mooseAssert(name != "ANY_BLOCK_ID", "Cannot set subdomain name to 'ANY_BLOCK_ID'");
1790  getMesh().subdomain_name(subdomain_id) = name;
1791 }
const std::string & name() const
Get the name of the class.
Definition: MooseBase.h:103
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
std::string & subdomain_name(subdomain_id_type id)

◆ setSubdomainName() [2/2]

static void MooseMesh::setSubdomainName ( MeshBase &  mesh,
SubdomainID  subdomain_id,
const SubdomainName &  name 
)
static

This method sets the name for subdomain_id on the provided mesh to name.

◆ setUniformRefineLevel()

void MooseMesh::setUniformRefineLevel ( unsigned int  level,
bool  deletion = true 
)

Set uniform refinement level.

Definition at line 3262 of file MooseMesh.C.

3263 {
3264  _uniform_refine_level = level;
3266 }
unsigned int _uniform_refine_level
The level of uniform refinement requested (set to zero if AMR is disabled)
Definition: MooseMesh.h:1488
bool _skip_deletion_repartition_after_refine
Whether or not skip remote deletion and repartition after uniform refinements.
Definition: MooseMesh.h:1494

◆ setupFiniteVolumeMeshData()

void MooseMesh::setupFiniteVolumeMeshData ( ) const

Sets up the additional data needed for finite volume computations.

This involves building FaceInfo and ElemInfo objects, caching variable associations and elemental DoF indices for FV variables.

Definition at line 4112 of file MooseMesh.C.

Referenced by DisplacedProblem::init(), FEProblemBase::init(), FEProblemBase::meshChanged(), and DisplacedProblem::updateMesh().

4113 {
4118 }
void cacheFVElementalDoFs() const
Cache the DoF indices for FV variables on each element.
Definition: MooseMesh.C:4059
void cacheFaceInfoVariableOwnership() const
Cache if variables live on the elements connected by the FaceInfo objects.
Definition: MooseMesh.C:3981
void buildFiniteVolumeInfo() const
Builds the face and elem info vectors that store meta-data needed for looping over and doing calculat...
Definition: MooseMesh.C:3779
void computeFiniteVolumeCoords() const
Compute the face coordinate value for all FaceInfo and ElemInfo objects.
Definition: MooseMesh.C:3917

◆ sideWithBoundaryID()

unsigned int MooseMesh::sideWithBoundaryID ( const Elem *const  elem,
const BoundaryID  boundary_id 
) const

Calls BoundaryInfo::side_with_boundary_id().

Definition at line 3061 of file MooseMesh.C.

3062 {
3063  return getMesh().get_boundary_info().side_with_boundary_id(elem, boundary_id);
3064 }
unsigned int side_with_boundary_id(const Elem *const elem, const boundary_id_type boundary_id) const
const BoundaryInfo & get_boundary_info() const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139

◆ skipDeletionRepartitionAfterRefine()

bool MooseMesh::skipDeletionRepartitionAfterRefine ( ) const
inline

Return a flag indicating whether or not we should skip remote deletion and repartition after uniform refinements.

If the flag is true, uniform refinements will run more efficiently, but at the same time, there might be extra ghosting elements. The number of layers of additional ghosting elements depends on the number of uniform refinement levels. This flag should be used only when you have a "fine enough" coarse mesh and want to refine the mesh by a few levels. Otherwise, it might introduce an unbalanced workload and too large ghosting domain.

Definition at line 2181 of file MooseMesh.h.

2182 {
2184 }
bool _skip_deletion_repartition_after_refine
Whether or not skip remote deletion and repartition after uniform refinements.
Definition: MooseMesh.h:1494

◆ skipNoncriticalPartitioning()

bool MooseMesh::skipNoncriticalPartitioning ( ) const
virtual

Definition at line 4442 of file MooseMesh.C.

4443 {
4444  return _mesh->skip_noncritical_partitioning();
4445 }
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1459

◆ skipPartitioning()

virtual bool MooseMesh::skipPartitioning ( ) const
inlinevirtual

Definition at line 333 of file MooseMesh.h.

333 { return _mesh->skip_partitioning(); }
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1459

◆ skipRefineWhenUseSplit()

bool MooseMesh::skipRefineWhenUseSplit ( ) const
inline

Whether or not skip uniform refinements when using a pre-split mesh.

Definition at line 589 of file MooseMesh.h.

589 { return _skip_refine_when_use_split; }
bool _skip_refine_when_use_split
Whether or not to skip uniform refinements when using a pre-split mesh.
Definition: MooseMesh.h:1491

◆ spatialDimension()

virtual unsigned int MooseMesh::spatialDimension ( ) const
inlinevirtual

Returns MeshBase::spatial_dimension.

Reimplemented in MFEMMesh.

Definition at line 186 of file MooseMesh.h.

186 { return _mesh->spatial_dimension(); }
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1459

◆ timedSectionName()

std::string PerfGraphInterface::timedSectionName ( const std::string &  section_name) const
protectedinherited
Returns
The name of the timed section with the name section_name.

Optionally adds a prefix if one is defined.

Definition at line 47 of file PerfGraphInterface.C.

Referenced by PerfGraphInterface::registerTimedSection().

48 {
49  return _prefix.empty() ? "" : (_prefix + "::") + section_name;
50 }
const std::string _prefix
A prefix to use for all sections.

◆ type()

const std::string& MooseBase::type ( ) const
inlineinherited

Get the type of this class.

Returns
the name of the type of this class

Definition at line 93 of file MooseBase.h.

Referenced by CreateProblemDefaultAction::act(), SetupDebugAction::act(), MaterialDerivativeTestAction::act(), MaterialOutputAction::act(), FEProblemBase::addAuxArrayVariable(), FEProblemBase::addAuxScalarVariable(), FEProblemBase::addAuxVariable(), FEProblemBase::addConvergence(), FEProblemBase::addDistribution(), MooseApp::addExecutor(), MooseApp::addExecutorParams(), MFEMProblem::addFunction(), FEProblemBase::addFunction(), FEProblemBase::addMeshDivision(), MooseApp::addMeshGenerator(), MeshGenerator::addMeshSubgenerator(), FEProblemBase::addObject(), MFEMProblem::addPostprocessor(), FEProblemBase::addPredictor(), CreateDisplacedProblemAction::addProxyRelationshipManagers(), FEProblemBase::addReporter(), FEProblemBase::addSampler(), FEProblemBase::addTimeIntegrator(), MooseServer::addValuesToList(), DisplacedProblem::addVectorTag(), SubProblem::addVectorTag(), FEProblemBase::advanceMultiApps(), MooseApp::appendMeshGenerator(), AuxKernelTempl< Real >::AuxKernelTempl(), FEProblemBase::backupMultiApps(), BatchMeshGeneratorAction::BatchMeshGeneratorAction(), BoundaryPreservedMarker::BoundaryPreservedMarker(), DistributedRectilinearMeshGenerator::buildCube(), buildHRefinementAndCoarseningMaps(), buildLowerDMesh(), buildPRefinementAndCoarseningMaps(), PhysicsBase::checkComponentType(), MeshDiagnosticsGenerator::checkNonConformalMeshFromAdaptivity(), ActionComponent::checkRequiredTasks(), PhysicsBase::checkRequiredTasks(), ADDGKernel::computeElemNeighJacobian(), DGKernel::computeElemNeighJacobian(), ElemElemConstraint::computeElemNeighJacobian(), ArrayDGKernel::computeElemNeighJacobian(), ADDGKernel::computeElemNeighResidual(), DGKernel::computeElemNeighResidual(), ElemElemConstraint::computeElemNeighResidual(), ArrayDGKernel::computeElemNeighResidual(), LowerDIntegratedBC::computeLowerDJacobian(), ArrayLowerDIntegratedBC::computeLowerDJacobian(), DGLowerDKernel::computeLowerDJacobian(), ArrayDGLowerDKernel::computeLowerDJacobian(), LowerDIntegratedBC::computeLowerDOffDiagJacobian(), ArrayLowerDIntegratedBC::computeLowerDOffDiagJacobian(), ArrayHFEMDirichletBC::computeLowerDQpJacobian(), ArrayHFEMDiffusion::computeLowerDQpJacobian(), HFEMDirichletBC::computeLowerDQpJacobian(), HFEMDiffusion::computeLowerDQpJacobian(), ArrayHFEMDirichletBC::computeLowerDQpOffDiagJacobian(), HFEMDirichletBC::computeLowerDQpOffDiagJacobian(), ArrayLowerDIntegratedBC::computeLowerDQpOffDiagJacobian(), ArrayDGLowerDKernel::computeLowerDQpOffDiagJacobian(), FEProblemBase::computeMultiAppsDT(), ADDGKernel::computeOffDiagElemNeighJacobian(), DGKernel::computeOffDiagElemNeighJacobian(), ArrayDGKernel::computeOffDiagElemNeighJacobian(), DGLowerDKernel::computeOffDiagLowerDJacobian(), ArrayDGLowerDKernel::computeOffDiagLowerDJacobian(), DGConvection::computeQpJacobian(), ScalarKernel::computeQpJacobian(), InterfaceDiffusion::computeQpJacobian(), InterfaceReaction::computeQpJacobian(), ArrayDGDiffusion::computeQpJacobian(), CoupledTiedValueConstraint::computeQpJacobian(), TiedValueConstraint::computeQpJacobian(), DGDiffusion::computeQpJacobian(), LinearNodalConstraint::computeQpJacobian(), EqualValueBoundaryConstraint::computeQpJacobian(), CoupledTiedValueConstraint::computeQpOffDiagJacobian(), HFEMTestJump::computeQpOffDiagJacobian(), HFEMTrialJump::computeQpOffDiagJacobian(), ArrayDGKernel::computeQpOffDiagJacobian(), ArrayHFEMDiffusion::computeQpResidual(), DGConvection::computeQpResidual(), HFEMDiffusion::computeQpResidual(), ScalarKernel::computeQpResidual(), InterfaceDiffusion::computeQpResidual(), ADMatInterfaceReaction::computeQpResidual(), InterfaceReaction::computeQpResidual(), ADDGAdvection::computeQpResidual(), ArrayDGDiffusion::computeQpResidual(), CoupledTiedValueConstraint::computeQpResidual(), TiedValueConstraint::computeQpResidual(), DGDiffusion::computeQpResidual(), LinearNodalConstraint::computeQpResidual(), ADDGDiffusion::computeQpResidual(), HFEMTrialJump::computeQpResidual(), EqualValueBoundaryConstraint::computeQpResidual(), HFEMTestJump::computeQpResidual(), FEProblemBase::computeSystems(), FEProblemBase::computeUserObjectByName(), FEProblemBase::computeUserObjects(), FEProblemBase::computeUserObjectsInternal(), DisplacedProblem::createQRules(), FEProblemBase::createQRules(), MooseApp::createRecoverablePerfGraph(), DumpObjectsProblem::deduceNecessaryParameters(), DumpObjectsProblem::dumpObjectHelper(), FEProblemBase::duplicateVariableCheck(), FEProblemBase::execMultiApps(), FEProblemBase::execMultiAppTransfers(), FEProblemBase::execTransfers(), WebServerControl::execute(), SteadyBase::execute(), ActionWarehouse::executeActionsWithAction(), FEProblemBase::finishMultiAppStep(), FVScalarLagrangeMultiplierInterface::FVScalarLagrangeMultiplierInterface(), MooseServer::gatherDocumentReferencesLocations(), Boundary2DDelaunayGenerator::General2DDelaunay(), LowerDBlockFromSidesetGenerator::generate(), SubdomainPerElementGenerator::generate(), Boundary2DDelaunayGenerator::generate(), PatternedMeshGenerator::generate(), MeshGenerator::generateInternal(), MultiAppTransfer::getAppInfo(), TransfiniteMeshGenerator::getEdge(), ElementGenerator::getElemType(), MooseServer::getInputLookupDefinitionNodes(), FEProblemBase::getMaterial(), FEProblemBase::getMaterialData(), FEProblemBase::getMaterialPropertyStorageConsumers(), MaterialOutputAction::getParams(), ReporterData::getReporterInfo(), FEProblemBase::getTransfers(), DisplacedProblem::getVectorTags(), SubProblem::getVectorTags(), CommonOutputAction::hasConsole(), FEProblemBase::hasMultiApps(), AdvancedOutput::hasOutput(), FEProblemBase::incrementMultiAppTStep(), AdvancedOutput::initAvailableLists(), FunctorPositions::initialize(), FunctorTimes::initialize(), MultiAppConservativeTransfer::initialSetup(), LinearFVAnisotropicDiffusion::initialSetup(), LinearFVDiffusion::initialSetup(), LinearFVAdvection::initialSetup(), ArrayDGDiffusion::initQpResidual(), AdvancedOutput::initShowHideLists(), RelationshipManager::isType(), FEProblemBase::logAdd(), MaterialFunctorConverterTempl< T >::MaterialFunctorConverterTempl(), MFEMProblem::mesh(), MooseObject::MooseObject(), MultiAppMFEMCopyTransfer::MultiAppMFEMCopyTransfer(), DisplacedProblem::numVectorTags(), SubProblem::numVectorTags(), Console::output(), AdvancedOutput::output(), ConsoleUtils::outputExecutionInformation(), SampledOutput::outputStep(), Output::outputStep(), FEProblemBase::outputStep(), MooseServer::parseDocumentForDiagnostics(), prepare(), ProjectedStatefulMaterialStorageAction::processProperty(), MooseApp::recursivelyCreateExecutors(), SolutionInvalidInterface::registerInvalidSolutionInternal(), FEProblemBase::restoreMultiApps(), MeshRepairGenerator::separateSubdomainsByElementType(), FEProblemBase::setCoupling(), MooseApp::setupOptions(), ExplicitTVDRK2::solve(), ExplicitRK2::solve(), WebServerControl::startServer(), Reporter::store(), MooseBase::typeAndName(), ScalarKernelBase::uOld(), AuxScalarKernel::uOld(), DisplacedProblem::updateGeomSearch(), FEProblemBase::updateGeomSearch(), UserObjectInterface::userObjectType(), and AdvancedOutput::wantOutput().

94  {
95  mooseAssert(_type.size(), "Empty type");
96  return _type;
97  }
const std::string & _type
The type of this class.
Definition: MooseBase.h:360

◆ typeAndName()

std::string MooseBase::typeAndName ( ) const
inherited

Get the class's combined type and name; useful in error handling.

Returns
The type and name of this class in the form '<type()> "<name()>"'.

Definition at line 57 of file MooseBase.C.

Referenced by FEProblemBase::addPostprocessor(), MaterialPropertyStorage::addProperty(), FEProblemBase::addReporter(), FEProblemBase::addVectorPostprocessor(), MeshGeneratorSystem::dataDrivenError(), ReporterContext< std::vector< T > >::finalize(), and ReporterData::getReporterInfo().

58 {
59  return type() + std::string(" \"") + name() + std::string("\"");
60 }
const std::string & name() const
Get the name of the class.
Definition: MooseBase.h:103
const std::string & type() const
Get the type of this class.
Definition: MooseBase.h:93

◆ uniformRefineLevel()

unsigned int MooseMesh::uniformRefineLevel ( ) const

Returns the level of uniform refinement requested (zero if AMR is disabled).

Definition at line 3256 of file MooseMesh.C.

Referenced by FEProblemBase::initialSetup(), and Adaptivity::uniformRefineWithProjection().

3257 {
3258  return _uniform_refine_level;
3259 }
unsigned int _uniform_refine_level
The level of uniform refinement requested (set to zero if AMR is disabled)
Definition: MooseMesh.h:1488

◆ uniqueName()

MooseObjectName MooseBase::uniqueName ( ) const
inherited
Returns
The unique name for accessing input parameters of this object in the InputParameterWarehouse

Definition at line 69 of file MooseBase.C.

Referenced by MooseBase::connectControllableParams(), and Action::uniqueActionName().

70 {
71  if (!_pars.have_parameter<std::string>(unique_name_param))
72  mooseError("uniqueName(): Object does not have a unique name");
73  return MooseObjectName(_pars.get<std::string>(unique_name_param));
74 }
const InputParameters & _pars
The object&#39;s parameters.
Definition: MooseBase.h:366
std::vector< std::pair< R1, R2 > > get(const std::string &param1, const std::string &param2) const
Combine two vector parameters into a single vector of pairs.
static const std::string unique_name_param
The name of the parameter that contains the unique object name.
Definition: MooseBase.h:57
bool have_parameter(std::string_view name) const
A wrapper around the Parameters base class method.
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type and optionally a file path to the top-level block p...
Definition: MooseBase.h:271
A class for storing the names of MooseObject by tag and object name.

◆ uniqueParameterName()

MooseObjectParameterName MooseBase::uniqueParameterName ( const std::string &  parameter_name) const
inherited
Returns
The unique parameter name of a valid parameter of this object for accessing parameter controls

Definition at line 63 of file MooseBase.C.

64 {
65  return MooseObjectParameterName(getBase(), name(), parameter_name);
66 }
const std::string & name() const
Get the name of the class.
Definition: MooseBase.h:103
A class for storing an input parameter name.
const std::string & getBase() const
Definition: MooseBase.h:147

◆ update()

void MooseMesh::update ( )

Calls buildNodeListFromSideList(), buildNodeList(), and buildBndElemList().

Definition at line 629 of file MooseMesh.C.

Referenced by meshChanged(), prepare(), and EqualValueBoundaryConstraint::updateConstrainedNodes().

630 {
631  TIME_SECTION("update", 3, "Updating Mesh", true);
632 
633  // Rebuild the boundary conditions
635 
636  // Update the node to elem map
637  _node_to_elem_map.clear();
638  _node_to_elem_map_built = false;
641 
642  buildNodeList();
644  cacheInfo();
645  buildElemIDInfo();
646 
647  // this will make moose mesh aware of p-refinement added by mesh generators including
648  // a file mesh generator loading a restart checkpoint file
649  _max_p_level = 0;
650  _max_h_level = 0;
651  for (const auto & elem : getMesh().active_local_element_ptr_range())
652  {
653  if (elem->p_level() > _max_p_level)
655  if (elem->level() > _max_h_level)
656  _max_h_level = elem->level();
657  }
658  comm().max(_max_p_level);
659  comm().max(_max_h_level);
660 
661  // the flag might have been set by calling doingPRefinement(true)
663 
664 #ifdef MOOSE_KOKKOS_ENABLED
666  _kokkos_mesh->update();
667 #endif
668 
670 }
bool _node_to_elem_map_built
Definition: MooseMesh.h:1537
void buildElemIDInfo()
Build extra data for faster access to the information of extra element integers.
Definition: MooseMesh.C:1097
bool _finite_volume_info_dirty
Definition: MooseMesh.h:1646
std::map< dof_id_type, std::vector< dof_id_type > > _node_to_elem_map
A map of all of the current nodes to the elements that they are connected to.
Definition: MooseMesh.h:1536
bool _doing_p_refinement
Whether we have p-refinement (as opposed to h-refinement)
Definition: MooseMesh.h:1920
const Parallel::Communicator & comm() const
unsigned int p_level() const
bool _node_to_active_semilocal_elem_map_built
Definition: MooseMesh.h:1541
void cacheInfo()
Definition: MooseMesh.C:1445
void buildNodeListFromSideList()
Calls BoundaryInfo::build_node_list_from_side_list().
Definition: MooseMesh.C:3023
FEProblemBase & feProblem() const
Definition: MooseApp.C:2000
unsigned int _max_h_level
Maximum h-refinement level of all elements.
Definition: MooseMesh.h:1924
bool hasKokkosObjects() const
Get whether there is any Kokkos object added by actions.
Definition: MooseApp.h:1118
std::unique_ptr< Moose::Kokkos::Mesh > _kokkos_mesh
Pointer to Kokkos mesh object.
Definition: MooseMesh.h:1463
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
MooseApp & _app
The MOOSE application this is associated with.
Definition: MooseBase.h:357
Executioner * getExecutioner() const
Retrieve the Executioner for this App.
Definition: MooseApp.C:2163
unsigned int level() const
void max(const T &r, T &o, Request &req) const
void buildBndElemList()
Definition: MooseMesh.C:1193
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139
bool hasKokkosObjects() const
void buildNodeList()
Calls BoundaryInfo::build_node_list()/build_side_list() and makes separate copies of Nodes/Elems in t...
Definition: MooseMesh.C:1040
std::map< dof_id_type, std::vector< dof_id_type > > _node_to_active_semilocal_elem_map
A map of all of the current nodes to the active elements that they are connected to.
Definition: MooseMesh.h:1540
unsigned int _max_p_level
Maximum p-refinement level of all elements.
Definition: MooseMesh.h:1922

◆ updateActiveSemiLocalNodeRange()

void MooseMesh::updateActiveSemiLocalNodeRange ( std::set< dof_id_type > &  ghosted_elems)

Clears the "semi-local" node list and rebuilds it.

Semi-local nodes consist of all nodes that belong to local and ghost elements.

Definition at line 966 of file MooseMesh.C.

Referenced by FEProblemBase::initialSetup(), FEProblemBase::meshChanged(), and FEProblemBase::possiblyRebuildGeomSearchPatches().

967 {
968  TIME_SECTION("updateActiveSemiLocalNodeRange", 5, "Updating ActiveSemiLocalNode Range");
969 
970  _semilocal_node_list.clear();
971 
972  // First add the nodes connected to local elems
973  ConstElemRange * active_local_elems = getActiveLocalElementRange();
974  for (const auto & elem : *active_local_elems)
975  {
976  for (unsigned int n = 0; n < elem->n_nodes(); ++n)
977  {
978  // Since elem is const here but we require a non-const Node * to
979  // store in the _semilocal_node_list (otherwise things like
980  // UpdateDisplacedMeshThread don't work), we are using a
981  // const_cast. A more long-term fix would be to have
982  // getActiveLocalElementRange return a non-const ElemRange.
983  Node * node = const_cast<Node *>(elem->node_ptr(n));
984 
985  _semilocal_node_list.insert(node);
986  }
987  }
988 
989  // Now add the nodes connected to ghosted_elems
990  for (const auto & ghost_elem_id : ghosted_elems)
991  {
992  Elem * elem = getMesh().elem_ptr(ghost_elem_id);
993  for (unsigned int n = 0; n < elem->n_nodes(); n++)
994  {
995  Node * node = elem->node_ptr(n);
996 
997  _semilocal_node_list.insert(node);
998  }
999  }
1000 
1001  // Now create the actual range
1002  _active_semilocal_node_range = std::make_unique<SemiLocalNodeRange>(_semilocal_node_list.begin(),
1003  _semilocal_node_list.end());
1004 }
std::set< Node * > _semilocal_node_list
Used for generating the semilocal node range.
Definition: MooseMesh.h:1519
libMesh::ConstElemRange * getActiveLocalElementRange()
Return pointers to range objects for various types of ranges (local nodes, boundary elems...
Definition: MooseMesh.C:1276
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3488
virtual unsigned int n_nodes() const=0
virtual const Elem * elem_ptr(const dof_id_type i) const=0
const Node * node_ptr(const unsigned int i) const
virtual const Node & node(const dof_id_type i) const
Various accessors (pointers/references) for Node "i".
Definition: MooseMesh.C:835
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3139
std::unique_ptr< SemiLocalNodeRange > _active_semilocal_node_range
Definition: MooseMesh.h:1527

◆ updateCoordTransform()

void MooseMesh::updateCoordTransform ( )
private

Update the coordinate transformation object based on our coordinate system data.

The coordinate transformation will be created if it hasn't been already

Definition at line 4325 of file MooseMesh.C.

Referenced by MooseMesh(), setAxisymmetricCoordAxis(), setCoordSystem(), and setGeneralAxisymmetricCoordAxes().

4326 {
4327  if (!_coord_transform)
4328  _coord_transform = std::make_unique<MooseAppCoordTransform>(*this);
4329  else
4330  _coord_transform->setCoordinateSystem(*this);
4331 }
std::unique_ptr< MooseAppCoordTransform > _coord_transform
A coordinate transformation object that describes how to transform this problem&#39;s coordinate system i...
Definition: MooseMesh.h:1911

◆ usingGeneralAxisymmetricCoordAxes()

bool MooseMesh::usingGeneralAxisymmetricCoordAxes ( ) const

Returns true if general axisymmetric coordinate axes are being used.

Definition at line 4319 of file MooseMesh.C.

Referenced by getAxisymmetricRadialCoord(), and getUniqueCoordSystem().

4320 {
4321  return _subdomain_id_to_rz_coord_axis.size() > 0;
4322 }
std::unordered_map< SubdomainID, std::pair< Point, RealVectorValue > > _subdomain_id_to_rz_coord_axis
Map of subdomain ID to general axisymmetric axis.
Definition: MooseMesh.h:1907

◆ validParams()

InputParameters MooseMesh::validParams ( )
static

Typical "Moose-style" constructor and copy constructor.

Definition at line 84 of file MooseMesh.C.

Referenced by FileMesh::validParams(), TiledMesh::validParams(), SpiralAnnularMesh::validParams(), GeneratedMesh::validParams(), RinglebMesh::validParams(), AnnularMesh::validParams(), ConcentricCircleMesh::validParams(), MeshGeneratorMesh::validParams(), StitchedMesh::validParams(), and PatternedMesh::validParams().

85 {
87 
88  MooseEnum parallel_type("DEFAULT REPLICATED DISTRIBUTED", "DEFAULT");
89  params.addParam<MooseEnum>("parallel_type",
90  parallel_type,
91  "DEFAULT: Use libMesh::ReplicatedMesh unless --distributed-mesh is "
92  "specified on the command line "
93  "REPLICATED: Always use libMesh::ReplicatedMesh "
94  "DISTRIBUTED: Always use libMesh::DistributedMesh");
95 
96  params.addParam<bool>(
97  "allow_renumbering",
98  true,
99  "If allow_renumbering=false, node and element numbers are kept fixed until deletion");
100 
101  // TODO: this parameter does not belong here, it's only for FileMesh
102  params.addParam<bool>("nemesis",
103  false,
104  "If nemesis=true and file=foo.e, actually reads "
105  "foo.e.N.0, foo.e.N.1, ... foo.e.N.N-1, "
106  "where N = # CPUs, with NemesisIO.");
107 
108  params.addParam<MooseEnum>(
109  "partitioner",
110  partitioning(),
111  "Specifies a mesh partitioner to use when splitting the mesh for a parallel computation.");
112  MooseEnum direction("x y z radial");
113  params.addParam<MooseEnum>("centroid_partitioner_direction",
114  direction,
115  "Specifies the sort direction if using the centroid partitioner. "
116  "Available options: x, y, z, radial");
117 
118  MooseEnum patch_update_strategy("never always auto iteration", "never");
119  params.addParam<MooseEnum>(
120  "patch_update_strategy",
121  patch_update_strategy,
122  "How often to update the geometric search 'patch'. The default is to "
123  "never update it (which is the most efficient but could be a problem "
124  "with lots of relative motion). 'always' will update the patch for all "
125  "secondary nodes at the beginning of every timestep which might be time "
126  "consuming. 'auto' will attempt to determine at the start of which "
127  "timesteps the patch for all secondary nodes needs to be updated automatically."
128  "'iteration' updates the patch at every nonlinear iteration for a "
129  "subset of secondary nodes for which penetration is not detected. If there "
130  "can be substantial relative motion between the primary and secondary surfaces "
131  "during the nonlinear iterations within a timestep, it is advisable to use "
132  "'iteration' option to ensure accurate contact detection.");
133 
134  // Note: This parameter is named to match 'construct_side_list_from_node_list' in SetupMeshAction
135  params.addParam<bool>(
136  "construct_node_list_from_side_list",
137  true,
138  "Whether or not to generate nodesets from the sidesets (usually a good idea).");
139  params.addParam<unsigned int>(
140  "patch_size", 40, "The number of nodes to consider in the NearestNode neighborhood.");
141  params.addParam<unsigned int>("ghosting_patch_size",
142  "The number of nearest neighbors considered "
143  "for ghosting purposes when 'iteration' "
144  "patch update strategy is used. Default is "
145  "5 * patch_size.");
146  params.addParam<unsigned int>("max_leaf_size",
147  10,
148  "The maximum number of points in each leaf of the KDTree used in "
149  "the nearest neighbor search. As the leaf size becomes larger,"
150  "KDTree construction becomes faster but the nearest neighbor search"
151  "becomes slower.");
152 
153  params.addParam<bool>("build_all_side_lowerd_mesh",
154  false,
155  "True to build the lower-dimensional mesh for all sides.");
156 
157  params.addParam<bool>("skip_refine_when_use_split",
158  true,
159  "True to skip uniform refinements when using a pre-split mesh.");
160 
161  params.addParam<std::vector<SubdomainID>>(
162  "add_subdomain_ids",
163  "The listed subdomain ids will be assumed valid for the mesh. This permits setting up "
164  "subdomain restrictions for subdomains initially containing no elements, which can occur, "
165  "for example, in additive manufacturing simulations which dynamically add and remove "
166  "elements. Names for this subdomains may be provided using add_subdomain_names. In this case "
167  "this list and add_subdomain_names must contain the same number of items.");
168  params.addParam<std::vector<SubdomainName>>(
169  "add_subdomain_names",
170  "The listed subdomain names will be assumed valid for the mesh. This permits setting up "
171  "subdomain restrictions for subdomains initially containing no elements, which can occur, "
172  "for example, in additive manufacturing simulations which dynamically add and remove "
173  "elements. IDs for this subdomains may be provided using add_subdomain_ids. Otherwise IDs "
174  "are automatically assigned. In case add_subdomain_ids is set too, both lists must contain "
175  "the same number of items.");
176 
177  params.addParam<std::vector<BoundaryID>>(
178  "add_sideset_ids",
179  "The listed sideset ids will be assumed valid for the mesh. This permits setting up boundary "
180  "restrictions for sidesets initially containing no sides. Names for this sidesets may be "
181  "provided using add_sideset_names. In this case this list and add_sideset_names must contain "
182  "the same number of items.");
183  params.addParam<std::vector<BoundaryName>>(
184  "add_sideset_names",
185  "The listed sideset names will be assumed valid for the mesh. This permits setting up "
186  "boundary restrictions for sidesets initially containing no sides. Ids for this sidesets may "
187  "be provided using add_sideset_ids. In this case this list and add_sideset_ids must contain "
188  "the same number of items.");
189 
190  params.addParam<std::vector<BoundaryID>>(
191  "add_nodeset_ids",
192  "The listed nodeset ids will be assumed valid for the mesh. This permits setting up boundary "
193  "restrictions for node initially containing no sides. Names for this nodesets may be "
194  "provided using add_nodeset_names. In this case this list and add_nodeset_names must contain "
195  "the same number of items.");
196  params.addParam<std::vector<BoundaryName>>(
197  "add_nodeset_names",
198  "The listed nodeset names will be assumed valid for the mesh. This permits setting up "
199  "boundary restrictions for nodesets initially containing no sides. Ids for this nodesets may "
200  "be provided using add_nodesets_ids. In this case this list and add_nodesets_ids must "
201  "contain the same number of items.");
202 
204 
205  // This indicates that the derived mesh type accepts a MeshGenerator, and should be set to true in
206  // derived types that do so.
207  params.addPrivateParam<bool>("_mesh_generator_mesh", false);
208 
209  // Whether or not the mesh is pre split
210  params.addPrivateParam<bool>("_is_split", false);
211 
212  params.registerBase("MooseMesh");
213 
214  // groups
215  params.addParamNamesToGroup("patch_update_strategy patch_size max_leaf_size", "Geometric search");
216  params.addParamNamesToGroup("nemesis", "Advanced");
217  params.addParamNamesToGroup("add_subdomain_ids add_subdomain_names add_sideset_ids "
218  "add_sideset_names add_nodeset_ids add_nodeset_names",
219  "Pre-declaration of future mesh sub-entities");
220  params.addParamNamesToGroup("construct_node_list_from_side_list build_all_side_lowerd_mesh",
221  "Automatic definition of mesh element sides entities");
222  params.addParamNamesToGroup("partitioner centroid_partitioner_direction", "Partitioning");
223 
224  return params;
225 }
static InputParameters validParams()
Describes the parameters this object can take to setup transformations.
The main MOOSE class responsible for handling user-defined parameters in almost every MOOSE system...
This is a "smart" enum class intended to replace many of the shortcomings in the C++ enum type It sho...
Definition: MooseEnum.h:33
static MooseEnum partitioning()
returns MooseMesh partitioning options so other classes can use it
Definition: MooseMesh.C:3938
void addParam(const std::string &name, const S &value, const std::string &doc_string)
These methods add an optional parameter and a documentation string to the InputParameters object...
static InputParameters validParams()
Definition: MooseObject.C:25

Member Data Documentation

◆ _action_factory

ActionFactory& ParallelParamObject::_action_factory
protectedinherited

◆ _active_local_elem_range

std::unique_ptr<libMesh::ConstElemRange> MooseMesh::_active_local_elem_range
protected

A range for use with threading.

We do this so that it doesn't have to get rebuilt all the time (which takes time).

Definition at line 1525 of file MooseMesh.h.

Referenced by getActiveLocalElementRange(), and meshChanged().

◆ _active_node_range

std::unique_ptr<libMesh::NodeRange> MooseMesh::_active_node_range
protected

Definition at line 1528 of file MooseMesh.h.

Referenced by getActiveNodeRange(), and meshChanged().

◆ _active_semilocal_node_range

std::unique_ptr<SemiLocalNodeRange> MooseMesh::_active_semilocal_node_range
protected

◆ _all_face_info

std::vector<FaceInfo> MooseMesh::_all_face_info
mutableprivate

FaceInfo object storing information for face based loops.

This container holds all the FaceInfo objects accessible from this process

Definition at line 1635 of file MooseMesh.h.

Referenced by allFaceInfo(), buildFiniteVolumeInfo(), cacheFaceInfoVariableOwnership(), and computeFiniteVolumeCoords().

◆ _allow_recovery

bool MooseMesh::_allow_recovery
private

Whether or not this Mesh is allowed to read a recovery file.

Definition at line 1850 of file MooseMesh.h.

Referenced by allowRecovery(), and init().

◆ _allow_remote_element_removal

bool MooseMesh::_allow_remote_element_removal
private

Whether to allow removal of remote elements.

Definition at line 1859 of file MooseMesh.h.

Referenced by allowRemoteElementRemoval(), buildTypedMesh(), deleteRemoteElements(), and setMeshBase().

◆ _app

MooseApp& MooseBase::_app
protectedinherited

The MOOSE application this is associated with.

Definition at line 357 of file MooseBase.h.

◆ _block_id_mapping

std::vector<std::unordered_map<SubdomainID, std::set<dof_id_type> > > MooseMesh::_block_id_mapping
private

Unique element integer IDs for each subdomain and each extra element integers.

Definition at line 1871 of file MooseMesh.h.

Referenced by buildElemIDInfo(), getAllElemIDs(), and getElemIDsOnBlocks().

◆ _block_node_list

std::map<dof_id_type, std::set<SubdomainID> > MooseMesh::_block_node_list
protected

list of nodes that belongs to a specified block (domain)

Definition at line 1584 of file MooseMesh.h.

Referenced by cacheInfo(), and getNodeBlockIds().

◆ _bnd_elem_ids

std::unordered_map<boundary_id_type, std::unordered_set<dof_id_type> > MooseMesh::_bnd_elem_ids
protected

Map of set of elem IDs connected to each boundary.

Definition at line 1576 of file MooseMesh.h.

Referenced by buildBndElemList(), freeBndElems(), getBoundariesToActiveSemiLocalElemIds(), getBoundaryActiveSemiLocalElemIds(), and isBoundaryElem().

◆ _bnd_elem_range

std::unique_ptr<libMesh::StoredRange<MooseMesh::const_bnd_elem_iterator, const BndElement *> > MooseMesh::_bnd_elem_range
protected

◆ _bnd_elems

std::vector<BndElement *> MooseMesh::_bnd_elems
protected

array of boundary elems

Definition at line 1571 of file MooseMesh.h.

Referenced by bndElemsBegin(), bndElemsEnd(), buildBndElemList(), freeBndElems(), and getBoundaryActiveNeighborElemIds().

◆ _bnd_node_ids

std::map<boundary_id_type, std::set<dof_id_type> > MooseMesh::_bnd_node_ids
protected

Map of sets of node IDs in each boundary.

Definition at line 1568 of file MooseMesh.h.

Referenced by addQuadratureNode(), buildNodeList(), freeBndNodes(), and isBoundaryNode().

◆ _bnd_node_range

std::unique_ptr<libMesh::StoredRange<MooseMesh::const_bnd_node_iterator, const BndNode *> > MooseMesh::_bnd_node_range
protected

Definition at line 1531 of file MooseMesh.h.

Referenced by addQuadratureNode(), freeBndNodes(), getBoundaryNodeRange(), and meshChanged().

◆ _bnd_nodes

std::vector<BndNode *> MooseMesh::_bnd_nodes
protected

array of boundary nodes

Definition at line 1564 of file MooseMesh.h.

Referenced by addQuadratureNode(), bndNodesBegin(), bndNodesEnd(), buildNodeList(), and freeBndNodes().

◆ _boundary_to_normal_map

std::unique_ptr<std::map<BoundaryID, RealVectorValue> > MooseMesh::_boundary_to_normal_map
protected

The boundary to normal map - valid only when AddAllSideSetsByNormals is active.

Definition at line 1561 of file MooseMesh.h.

Referenced by getNormalByBoundaryID(), and setBoundaryToNormalMap().

◆ _bounds

std::vector<std::vector<Real> > MooseMesh::_bounds
protected

The bounds in each dimension of the mesh for regular orthogonal meshes.

Definition at line 1611 of file MooseMesh.h.

Referenced by detectOrthogonalDimRanges(), getMaxInDimension(), getMinInDimension(), and MooseMesh().

◆ _built_from_other_mesh

bool MooseMesh::_built_from_other_mesh = false
protected

Whether or not this mesh was built from another mesh.

Definition at line 1445 of file MooseMesh.h.

Referenced by prepare().

◆ _coarsened_element_children

std::map<const Elem *, std::vector<const Elem *> > MooseMesh::_coarsened_element_children
protected

Map of Parent elements to child elements for elements that were just coarsened.

NOTE: the child element pointers ARE PROBABLY INVALID. Only use them for indexing!

Definition at line 1516 of file MooseMesh.h.

Referenced by cacheChangedLists(), and coarsenedElementChildren().

◆ _coarsened_elements

std::unique_ptr<ConstElemPointerRange> MooseMesh::_coarsened_elements
protected

The elements that were just coarsened.

Definition at line 1509 of file MooseMesh.h.

Referenced by cacheChangedLists(), and coarsenedElementRange().

◆ _console

const ConsoleStream ConsoleStreamInterface::_console
inherited

An instance of helper class to write streams to the Console objects.

Definition at line 31 of file ConsoleStreamInterface.h.

Referenced by IterationAdaptiveDT::acceptStep(), MeshOnlyAction::act(), SetupDebugAction::act(), MaterialOutputAction::act(), Adaptivity::adaptMesh(), FEProblemBase::adaptMesh(), PerfGraph::addToExecutionList(), SimplePredictor::apply(), SystemBase::applyScalingFactors(), MultiApp::backup(), FEProblemBase::backupMultiApps(), CoarsenedPiecewiseLinear::buildCoarsenedGrid(), DefaultSteadyStateConvergence::checkConvergence(), MeshDiagnosticsGenerator::checkElementOverlap(), MeshDiagnosticsGenerator::checkElementTypes(), MeshDiagnosticsGenerator::checkElementVolumes(), FEProblemBase::checkExceptionAndStopSolve(), SolverSystem::checkInvalidSolution(), MeshDiagnosticsGenerator::checkLocalJacobians(), MeshDiagnosticsGenerator::checkNonConformalMesh(), MeshDiagnosticsGenerator::checkNonConformalMeshFromAdaptivity(), MeshDiagnosticsGenerator::checkNonMatchingEdges(), MeshDiagnosticsGenerator::checkNonPlanarSides(), FEProblemBase::checkProblemIntegrity(), ReferenceResidualConvergence::checkRelativeConvergence(), MeshDiagnosticsGenerator::checkSidesetsOrientation(), MeshDiagnosticsGenerator::checkWatertightNodesets(), MeshDiagnosticsGenerator::checkWatertightSidesets(), IterationAdaptiveDT::computeAdaptiveDT(), TransientBase::computeConstrainedDT(), DefaultMultiAppFixedPointConvergence::computeCustomConvergencePostprocessor(), NonlinearSystemBase::computeDamping(), FixedPointIterationAdaptiveDT::computeDT(), IterationAdaptiveDT::computeDT(), IterationAdaptiveDT::computeFailedDT(), IterationAdaptiveDT::computeInitialDT(), IterationAdaptiveDT::computeInterpolationDT(), LinearSystem::computeLinearSystemTags(), FEProblemBase::computeLinearSystemTags(), NonlinearSystemBase::computeScaling(), Problem::console(), IterationAdaptiveDT::constrainStep(), TimeStepper::constrainStep(), MultiApp::createApp(), FEProblemBase::execMultiApps(), FEProblemBase::execMultiAppTransfers(), MFEMSteady::execute(), MessageFromInput::execute(), SteadyBase::execute(), Eigenvalue::execute(), ActionWarehouse::executeActionsWithAction(), ActionWarehouse::executeAllActions(), MeshGeneratorSystem::executeMeshGenerators(), ElementQualityChecker::finalize(), SidesetAroundSubdomainUpdater::finalize(), FEProblemBase::finishMultiAppStep(), MeshRepairGenerator::fixOverlappingNodes(), CoarsenBlockGenerator::generate(), MeshGenerator::generateInternal(), VariableCondensationPreconditioner::getDofToCondense(), NonlinearEigen::init(), InversePowerMethod::init(), FEProblemBase::initialAdaptMesh(), DefaultMultiAppFixedPointConvergence::initialize(), EigenExecutionerBase::inversePowerIteration(), FEProblemBase::joinAndFinalize(), TransientBase::keepGoing(), IterationAdaptiveDT::limitDTByFunction(), IterationAdaptiveDT::limitDTToPostprocessorValue(), FEProblemBase::logAdd(), EigenExecutionerBase::makeBXConsistent(), Console::meshChanged(), MooseBase::mooseDeprecated(), MooseBase::mooseInfo(), MooseBase::mooseWarning(), MooseBase::mooseWarningNonPrefixed(), ReferenceResidualConvergence::nonlinearConvergenceSetup(), ReporterDebugOutput::output(), PerfGraphOutput::output(), SolutionInvalidityOutput::output(), MaterialPropertyDebugOutput::output(), DOFMapOutput::output(), VariableResidualNormsDebugOutput::output(), Console::output(), ControlOutput::outputActiveObjects(), ControlOutput::outputChangedControls(), ControlOutput::outputControls(), Console::outputInput(), Console::outputPostprocessors(), PseudoTimestep::outputPseudoTimestep(), Console::outputReporters(), DefaultMultiAppFixedPointConvergence::outputResidualNorm(), Console::outputScalarVariables(), Console::outputSystemInformation(), FEProblemBase::possiblyRebuildGeomSearchPatches(), EigenExecutionerBase::postExecute(), AB2PredictorCorrector::postSolve(), ActionWarehouse::printActionDependencySets(), BlockRestrictionDebugOutput::printBlockRestrictionMap(), SolutionInvalidity::printDebug(), EigenExecutionerBase::printEigenvalue(), SecantSolve::printFixedPointConvergenceHistory(), SteffensenSolve::printFixedPointConvergenceHistory(), PicardSolve::printFixedPointConvergenceHistory(), FixedPointSolve::printFixedPointConvergenceReason(), PerfGraphLivePrint::printLiveMessage(), MaterialPropertyDebugOutput::printMaterialMap(), PerfGraphLivePrint::printStats(), NEML2Action::printSummary(), AutomaticMortarGeneration::projectPrimaryNodesSinglePair(), AutomaticMortarGeneration::projectSecondaryNodesSinglePair(), CoarsenBlockGenerator::recursiveCoarsen(), SolutionTimeAdaptiveDT::rejectStep(), MultiApp::restore(), FEProblemBase::restoreMultiApps(), FEProblemBase::restoreSolutions(), NonlinearSystemBase::setInitialSolution(), MooseApp::setupOptions(), Checkpoint::shouldOutput(), SubProblem::showFunctorRequestors(), SubProblem::showFunctors(), FullSolveMultiApp::showStatusMessage(), EigenProblem::solve(), FEProblemSolve::solve(), NonlinearSystem::solve(), FixedPointSolve::solve(), LinearSystem::solve(), LStableDirk2::solve(), LStableDirk3::solve(), ImplicitMidpoint::solve(), ExplicitTVDRK2::solve(), LStableDirk4::solve(), AStableDirk4::solve(), ExplicitRK2::solve(), TransientMultiApp::solveStep(), FixedPointSolve::solveStep(), PerfGraphLivePrint::start(), AB2PredictorCorrector::step(), NonlinearEigen::takeStep(), MFEMTransient::takeStep(), TransientBase::takeStep(), TerminateChainControl::terminate(), FEProblemBase::updateMeshXFEM(), Convergence::verboseOutput(), Console::writeTimestepInformation(), Console::writeVariableNorms(), and FEProblemBase::~FEProblemBase().

◆ _construct_node_list_from_side_list

bool MooseMesh::_construct_node_list_from_side_list
private

Whether or not to allow generation of nodesets from sidesets.

Definition at line 1853 of file MooseMesh.h.

Referenced by buildNodeListFromSideList(), and getConstructNodeListFromSideList().

◆ _coord_sys

std::map<SubdomainID, Moose::CoordinateSystemType>& MooseMesh::_coord_sys
private

Type of coordinate system per subdomain.

Definition at line 1901 of file MooseMesh.h.

Referenced by checkCoordinateSystems(), getCoordSystem(), getUniqueCoordSystem(), setCoordData(), setCoordSystem(), and setGeneralAxisymmetricCoordAxes().

◆ _coord_system_set

bool MooseMesh::_coord_system_set
private

Whether the coordinate system has been set.

Definition at line 1914 of file MooseMesh.h.

Referenced by prepare(), and setCoordSystem().

◆ _coord_transform

std::unique_ptr<MooseAppCoordTransform> MooseMesh::_coord_transform
private

A coordinate transformation object that describes how to transform this problem's coordinate system into the canonical/reference coordinate system.

Definition at line 1911 of file MooseMesh.h.

Referenced by coordTransform(), lengthUnit(), and updateCoordTransform().

◆ _custom_partitioner

std::unique_ptr<libMesh::Partitioner> MooseMesh::_custom_partitioner
protected

The custom partitioner.

Definition at line 1471 of file MooseMesh.h.

Referenced by buildTypedMesh(), and setCustomPartitioner().

◆ _custom_partitioner_requested

bool MooseMesh::_custom_partitioner_requested
protected

◆ _distribution_overridden

bool MooseMesh::_distribution_overridden
protected

Definition at line 1455 of file MooseMesh.h.

◆ _doing_p_refinement

bool MooseMesh::_doing_p_refinement
private

Whether we have p-refinement (as opposed to h-refinement)

Definition at line 1920 of file MooseMesh.h.

Referenced by doingPRefinement(), and update().

◆ _elem_info

std::vector<const ElemInfo *> MooseMesh::_elem_info
mutableprivate

Holds only those ElemInfo objects that have processor_id equal to this process's id, e.g.

the local ElemInfo objects

Definition at line 1631 of file MooseMesh.h.

Referenced by buildFiniteVolumeInfo(), elemInfoVector(), ownedElemInfoBegin(), and ownedElemInfoEnd().

◆ _elem_side_to_face_info

std::unordered_map<std::pair<const Elem *, unsigned int>, FaceInfo *> MooseMesh::_elem_side_to_face_info
mutableprivate

Map from elem-side pair to FaceInfo.

Definition at line 1643 of file MooseMesh.h.

Referenced by buildFiniteVolumeInfo().

◆ _elem_to_elem_info

std::unordered_map<dof_id_type, ElemInfo> MooseMesh::_elem_to_elem_info
mutableprivate

Map connecting elems with their corresponding ElemInfo, we use the element ID as the key.

Definition at line 1627 of file MooseMesh.h.

Referenced by buildFiniteVolumeInfo(), cacheFVElementalDoFs(), computeFiniteVolumeCoords(), and elemInfo().

◆ _elem_to_side_to_qp_to_quadrature_nodes

std::map<dof_id_type, std::map<unsigned int, std::map<dof_id_type, Node *> > > MooseMesh::_elem_to_side_to_qp_to_quadrature_nodes
protected

Definition at line 1580 of file MooseMesh.h.

Referenced by addQuadratureNode(), clearQuadratureNodes(), and getQuadratureNode().

◆ _elem_type_to_child_side_refinement_map

std::map<libMesh::ElemType, std::map<std::pair<int, int>, std::vector<std::vector<QpMap> > > > MooseMesh::_elem_type_to_child_side_refinement_map
private

Holds mappings for "internal" child sides to parent volume. The second key is (child, child_side).

Definition at line 1793 of file MooseMesh.h.

Referenced by buildRefinementMap(), and getRefinementMap().

◆ _elem_type_to_coarsening_map

std::map<std::pair<int, libMesh::ElemType>, std::vector<std::pair<unsigned int, QpMap> > > MooseMesh::_elem_type_to_coarsening_map
private

Holds mappings for volume to volume and parent side to child side Map key:

  • first member corresponds to element side. It's -1 for volume quadrature points
  • second member correponds to the element type Map value:
  • Vector is sized based on the number of quadrature points in the parent (e.g. coarser) element.
  • For each parent quadrature point we store a pair
    • The first member of the pair identifies which child holds the closest refined-level quadrature point
    • The second member of the pair is the QpMap. The _from data member will correspond to the parent quadrature point index. The _to data member will correspond to which child element quadrature point is closest to the parent quadrature point. And _distance is the distance between the two

Definition at line 1810 of file MooseMesh.h.

Referenced by buildCoarseningMap(), and getCoarseningMap().

◆ _elem_type_to_p_coarsening_map

std::map<std::pair<libMesh::ElemType, unsigned int>, std::vector<QpMap> > MooseMesh::_elem_type_to_p_coarsening_map
private

Definition at line 1813 of file MooseMesh.h.

Referenced by buildPRefinementAndCoarseningMaps(), and getPCoarseningMap().

◆ _elem_type_to_p_coarsening_side_map

std::map<std::pair<libMesh::ElemType, unsigned int>, std::vector<QpMap> > MooseMesh::_elem_type_to_p_coarsening_side_map
private

Definition at line 1815 of file MooseMesh.h.

Referenced by buildPRefinementAndCoarseningMaps(), and getPCoarseningSideMap().

◆ _elem_type_to_p_refinement_map

std::map<std::pair<libMesh::ElemType, unsigned int>, std::vector<QpMap> > MooseMesh::_elem_type_to_p_refinement_map
private

Definition at line 1787 of file MooseMesh.h.

Referenced by buildPRefinementAndCoarseningMaps(), and getPRefinementMap().

◆ _elem_type_to_p_refinement_side_map

std::map<std::pair<libMesh::ElemType, unsigned int>, std::vector<QpMap> > MooseMesh::_elem_type_to_p_refinement_side_map
private

Definition at line 1789 of file MooseMesh.h.

Referenced by buildPRefinementAndCoarseningMaps(), and getPRefinementSideMap().

◆ _elem_type_to_refinement_map

std::map<std::pair<int, libMesh::ElemType>, std::vector<std::vector<QpMap> > > MooseMesh::_elem_type_to_refinement_map
private

Holds mappings for volume to volume and parent side to child side Map key:

  • first member corresponds to element side. It's -1 for volume quadrature points
  • second member correponds to the element type Map value:
  • Outermost index is the child element index
  • Once we have indexed by the child element index, we have a std::vector of QpMaps. This vector is sized by the number of reference points in the child element. Then for each reference point in the child element we have a QpMap whose _from index corresponds to the child element reference point, a _to index which corresponds to the reference point on the parent element that the child element reference point is closest to, and a _distance member which is the distance between the mapped child and parent reference quadrature points

Definition at line 1784 of file MooseMesh.h.

Referenced by buildRefinementMap(), and getRefinementMap().

◆ _enabled

const bool& MooseObject::_enabled
protectedinherited

Reference to the "enable" InputParameters, used by Controls for toggling on/off MooseObjects.

Definition at line 80 of file MooseObject.h.

Referenced by MooseObject::enabled().

◆ _extra_bnd_nodes

std::vector<BndNode> MooseMesh::_extra_bnd_nodes
protected

Definition at line 1581 of file MooseMesh.h.

Referenced by addQuadratureNode(), buildNodeList(), and clearQuadratureNodes().

◆ _extreme_nodes

std::vector<Node *> MooseMesh::_extreme_nodes
private

A vector containing the nodes at the corners of a regular orthogonal mesh.

Definition at line 1665 of file MooseMesh.h.

Referenced by detectOrthogonalDimRanges().

◆ _face_info

std::vector<const FaceInfo *> MooseMesh::_face_info
mutableprivate

Holds only those FaceInfo objects that have processor_id equal to this process's id, e.g.

the local FaceInfo objects

Definition at line 1639 of file MooseMesh.h.

Referenced by buildFiniteVolumeInfo(), faceInfo(), nFace(), ownedFaceInfoBegin(), and ownedFaceInfoEnd().

◆ _factory

Factory& ParallelParamObject::_factory
protectedinherited

◆ _finite_volume_info_dirty

bool MooseMesh::_finite_volume_info_dirty = true
mutableprivate

◆ _ghost_elems_from_ghost_boundaries

std::set<Elem *> MooseMesh::_ghost_elems_from_ghost_boundaries
private

Set of elements ghosted by ghostGhostedBoundaries.

Definition at line 1862 of file MooseMesh.h.

Referenced by ghostGhostedBoundaries().

◆ _ghosted_boundaries

std::set<unsigned int> MooseMesh::_ghosted_boundaries
protected

Definition at line 1589 of file MooseMesh.h.

Referenced by addGhostedBoundary(), getGhostedBoundaries(), and ghostGhostedBoundaries().

◆ _ghosted_boundaries_inflation

std::vector<Real> MooseMesh::_ghosted_boundaries_inflation
protected

Definition at line 1590 of file MooseMesh.h.

Referenced by getGhostedBoundaryInflation(), and setGhostedBoundaryInflation().

◆ _ghosting_functors

std::vector<std::unique_ptr<libMesh::GhostingFunctor> > MooseMesh::_ghosting_functors
protected

Deprecated (DO NOT USE)

Definition at line 1439 of file MooseMesh.h.

◆ _ghosting_patch_size

unsigned int MooseMesh::_ghosting_patch_size
protected

The number of nearest neighbors to consider for ghosting purposes when iteration patch update strategy is used.

Definition at line 1596 of file MooseMesh.h.

Referenced by getGhostingPatchSize().

◆ _half_range

RealVectorValue MooseMesh::_half_range
private

A convenience vector used to hold values in each dimension representing half of the range.

Definition at line 1662 of file MooseMesh.h.

Referenced by addPeriodicVariable(), and minPeriodicVector().

◆ _has_lower_d

bool MooseMesh::_has_lower_d
private

Whether there are any lower-dimensional blocks that are manifolds of higher-dimensional block faces.

Definition at line 1847 of file MooseMesh.h.

Referenced by cacheInfo(), and hasLowerD().

◆ _higher_d_elem_side_to_lower_d_elem

std::unordered_map<std::pair<const Elem *, unsigned short int>, const Elem *> MooseMesh::_higher_d_elem_side_to_lower_d_elem
private

Holds a map from a high-order element side to its corresponding lower-d element.

Definition at line 1842 of file MooseMesh.h.

Referenced by buildLowerDMesh(), cacheInfo(), getLowerDElem(), and getLowerDElemMap().

◆ _id_identical_flag

std::vector<std::vector<bool> > MooseMesh::_id_identical_flag
private

Flags to indicate whether or not any two extra element integers are the same.

Definition at line 1877 of file MooseMesh.h.

Referenced by areElemIDsIdentical(), and buildElemIDInfo().

◆ _is_changed

bool MooseMesh::_is_changed
protected

true if mesh is changed (i.e. after adaptivity step)

Definition at line 1497 of file MooseMesh.h.

◆ _is_displaced

bool MooseMesh::_is_displaced
private

Whether this mesh is displaced.

Definition at line 1892 of file MooseMesh.h.

Referenced by isDisplaced().

◆ _is_nemesis

bool MooseMesh::_is_nemesis
protected

True if a Nemesis Mesh was read in.

Definition at line 1500 of file MooseMesh.h.

Referenced by FileMesh::buildMesh(), determineUseDistributedMesh(), prepare(), and FileMesh::read().

◆ _is_split

const bool MooseMesh::_is_split
protected

Whether or not we are using a (pre-)split mesh (automatically DistributedMesh)

Definition at line 1617 of file MooseMesh.h.

Referenced by determineUseDistributedMesh(), and isSplit().

◆ _kokkos_mesh

std::unique_ptr<Moose::Kokkos::Mesh> MooseMesh::_kokkos_mesh
protected

Pointer to Kokkos mesh object.

Definition at line 1463 of file MooseMesh.h.

Referenced by getKokkosMesh(), MooseMesh(), and update().

◆ _linear_finite_volume_dofs_cached

bool MooseMesh::_linear_finite_volume_dofs_cached = false
mutableprivate

Definition at line 1651 of file MooseMesh.h.

◆ _local_node_range

std::unique_ptr<libMesh::ConstNodeRange> MooseMesh::_local_node_range
protected

Definition at line 1529 of file MooseMesh.h.

Referenced by getLocalNodeRange(), and meshChanged().

◆ _lower_d_boundary_blocks

std::set<SubdomainID> MooseMesh::_lower_d_boundary_blocks
private

Mesh blocks for boundary lower-d elements in different types.

Definition at line 1839 of file MooseMesh.h.

Referenced by boundaryLowerDBlocks(), buildLowerDMesh(), and cacheInfo().

◆ _lower_d_elem_to_higher_d_elem_side

std::unordered_map<const Elem *, unsigned short int> MooseMesh::_lower_d_elem_to_higher_d_elem_side
private

Definition at line 1843 of file MooseMesh.h.

Referenced by buildLowerDMesh(), cacheInfo(), and getHigherDSide().

◆ _lower_d_interior_blocks

std::set<SubdomainID> MooseMesh::_lower_d_interior_blocks
private

Mesh blocks for interior lower-d elements in different types.

Definition at line 1837 of file MooseMesh.h.

Referenced by buildLowerDMesh(), cacheInfo(), and interiorLowerDBlocks().

◆ _max_h_level

unsigned int MooseMesh::_max_h_level
private

Maximum h-refinement level of all elements.

Definition at line 1924 of file MooseMesh.h.

Referenced by maxHLevel(), and update().

◆ _max_ids

std::vector<dof_id_type> MooseMesh::_max_ids
private

Maximum integer ID for each extra element integer.

Definition at line 1873 of file MooseMesh.h.

Referenced by buildElemIDInfo(), and maxElementID().

◆ _max_leaf_size

unsigned int MooseMesh::_max_leaf_size
protected

Definition at line 1599 of file MooseMesh.h.

Referenced by getMaxLeafSize().

◆ _max_nodes_per_elem

unsigned int MooseMesh::_max_nodes_per_elem
private

The maximum number of nodes per element.

Definition at line 1883 of file MooseMesh.h.

Referenced by computeMaxPerElemAndSide(), and getMaxNodesPerElem().

◆ _max_nodes_per_side

unsigned int MooseMesh::_max_nodes_per_side
private

The maximum number of nodes per side.

Definition at line 1886 of file MooseMesh.h.

Referenced by computeMaxPerElemAndSide(), and getMaxNodesPerSide().

◆ _max_p_level

unsigned int MooseMesh::_max_p_level
private

Maximum p-refinement level of all elements.

Definition at line 1922 of file MooseMesh.h.

Referenced by maxPLevel(), and update().

◆ _max_sides_per_elem

unsigned int MooseMesh::_max_sides_per_elem
private

The maximum number of sides per element.

Definition at line 1880 of file MooseMesh.h.

Referenced by computeMaxPerElemAndSide(), and getMaxSidesPerElem().

◆ _mesh

std::unique_ptr<libMesh::MeshBase> MooseMesh::_mesh
protected

◆ _mesh_boundary_ids

std::set<BoundaryID> MooseMesh::_mesh_boundary_ids
protected

A set of boundary IDs currently present in the mesh.

In serial, this is equivalent to the values returned by _mesh.get_boundary_info().get_boundary_ids(). In parallel, it will contain off-processor boundary IDs as well.

Definition at line 1555 of file MooseMesh.h.

Referenced by getBoundaryIDs(), meshBoundaryIds(), prepare(), and setMeshBoundaryIDs().

◆ _mesh_nodeset_ids

std::set<BoundaryID> MooseMesh::_mesh_nodeset_ids
protected

Definition at line 1557 of file MooseMesh.h.

Referenced by meshNodesetIds(), and prepare().

◆ _mesh_sideset_ids

std::set<BoundaryID> MooseMesh::_mesh_sideset_ids
protected

Definition at line 1556 of file MooseMesh.h.

Referenced by meshSidesetIds(), and prepare().

◆ _mesh_subdomains

std::set<SubdomainID> MooseMesh::_mesh_subdomains
protected

A set of subdomain IDs currently present in the mesh.

For parallel meshes, includes subdomains defined on other processors as well.

Definition at line 1547 of file MooseMesh.h.

Referenced by buildLowerDMesh(), cacheInfo(), checkDuplicateSubdomainNames(), meshSubdomains(), and prepare().

◆ _min_ids

std::vector<dof_id_type> MooseMesh::_min_ids
private

Minimum integer ID for each extra element integer.

Definition at line 1875 of file MooseMesh.h.

Referenced by buildElemIDInfo(), and minElementID().

◆ _moose_mesh_prepared

bool MooseMesh::_moose_mesh_prepared = false
protected

True if prepare has been called on the mesh.

Definition at line 1503 of file MooseMesh.h.

Referenced by prepare(), and prepared().

◆ _name

const std::string& MooseBase::_name
protectedinherited

The name of this class.

Definition at line 363 of file MooseBase.h.

Referenced by AddBCAction::act(), AddConstraintAction::act(), AddDamperAction::act(), AddFVInitialConditionAction::act(), AddNodalKernelAction::act(), AddFVInterfaceKernelAction::act(), ReadExecutorParamsAction::act(), AddPostprocessorAction::act(), AddInitialConditionAction::act(), AddDiracKernelAction::act(), AddIndicatorAction::act(), AddMultiAppAction::act(), AddTransferAction::act(), AddUserObjectAction::act(), AddDGKernelAction::act(), AddVectorPostprocessorAction::act(), AddKernelAction::act(), PartitionerAction::act(), AddFunctorMaterialAction::act(), AddInterfaceKernelAction::act(), AddMarkerAction::act(), AddScalarKernelAction::act(), AddMeshGeneratorAction::act(), AddMaterialAction::act(), AddPositionsAction::act(), AddReporterAction::act(), AddTimesAction::act(), AddFieldSplitAction::act(), AddFVKernelAction::act(), AddFVBCAction::act(), AddDistributionAction::act(), SetupPreconditionerAction::act(), SetupTimeIntegratorAction::act(), AddFunctionAction::act(), AddConvergenceAction::act(), AddMeshDivisionAction::act(), AddHDGKernelAction::act(), AddTimeStepperAction::act(), AddOutputAction::act(), AddLinearFVBCAction::act(), AddLinearFVKernelAction::act(), AddCorrectorAction::act(), AddMeshModifiersAction::act(), AddSamplerAction::act(), AddControlAction::act(), AddMFEMFESpaceAction::act(), AddMFEMPreconditionerAction::act(), AddMFEMSolverAction::act(), AddMFEMSubMeshAction::act(), AddPeriodicBCAction::act(), ADPiecewiseLinearInterpolationMaterial::ADPiecewiseLinearInterpolationMaterial(), BatchMeshGeneratorAction::BatchMeshGeneratorAction(), PiecewiseTabularBase::buildFromFile(), PiecewiseTabularBase::buildFromXY(), PiecewiseLinearBase::buildInterpolation(), CombinerGenerator::CombinerGenerator(), Executor::Executor(), ExtraIDIntegralReporter::ExtraIDIntegralReporter(), QuadraturePointMultiApp::fillPositions(), CentroidMultiApp::fillPositions(), MultiApp::fillPositions(), FunctionDT::FunctionDT(), FillBetweenSidesetsGenerator::generate(), FillBetweenCurvesGenerator::generate(), FillBetweenPointVectorsGenerator::generate(), MooseBase::MooseBase(), NearestPointBase< LayeredSideDiffusiveFluxAverage, SideIntegralVariableUserObject >::name(), ParsedFunctorMaterialTempl< is_ad >::ParsedFunctorMaterialTempl(), PiecewiseBilinear::PiecewiseBilinear(), PiecewiseLinearInterpolationMaterial::PiecewiseLinearInterpolationMaterial(), PiecewiseBase::setData(), and AddVariableAction::varName().

◆ _need_delete

bool MooseMesh::_need_delete
private

Whether we need to delete remote elements after init'ing the EquationSystems.

Definition at line 1856 of file MooseMesh.h.

Referenced by allowRemoteElementRemoval(), and needsRemoteElemDeletion().

◆ _need_ghost_ghosted_boundaries

bool MooseMesh::_need_ghost_ghosted_boundaries
private

A parallel mesh generator such as DistributedRectilinearMeshGenerator already make everything ready.

We do not need to gather all boundaries to every single processor. In general, we should avoid using ghostGhostedBoundaries when possible since it is not scalable

Definition at line 1868 of file MooseMesh.h.

Referenced by ghostGhostedBoundaries(), and needGhostGhostedBoundaries().

◆ _neighbor_subdomain_boundary_ids

std::unordered_map<SubdomainID, std::set<BoundaryID> > MooseMesh::_neighbor_subdomain_boundary_ids
private

Holds a map from neighbor subomdain ids to the boundary ids that are attached to it.

Definition at line 1834 of file MooseMesh.h.

Referenced by cacheInfo(), getBoundaryConnectedSecondaryBlocks(), getInterfaceConnectedBlocks(), and getSubdomainInterfaceBoundaryIds().

◆ _node_map

std::vector<Node *> MooseMesh::_node_map
protected

Vector of all the Nodes in the mesh for determining when to add a new point.

Definition at line 1605 of file MooseMesh.h.

Referenced by addUniqueNode().

◆ _node_set_nodes

std::map<boundary_id_type, std::vector<dof_id_type> > MooseMesh::_node_set_nodes
protected

list of nodes that belongs to a specified nodeset: indexing [nodeset_id] -> [array of node ids]

Definition at line 1587 of file MooseMesh.h.

Referenced by buildNodeList(), freeBndNodes(), getNodeList(), and nodeSetNodes().

◆ _node_to_active_semilocal_elem_map

std::map<dof_id_type, std::vector<dof_id_type> > MooseMesh::_node_to_active_semilocal_elem_map
protected

A map of all of the current nodes to the active elements that they are connected to.

Definition at line 1540 of file MooseMesh.h.

Referenced by addQuadratureNode(), nodeToActiveSemilocalElemMap(), and update().

◆ _node_to_active_semilocal_elem_map_built

bool MooseMesh::_node_to_active_semilocal_elem_map_built
protected

Definition at line 1541 of file MooseMesh.h.

Referenced by nodeToActiveSemilocalElemMap(), and update().

◆ _node_to_elem_map

std::map<dof_id_type, std::vector<dof_id_type> > MooseMesh::_node_to_elem_map
protected

A map of all of the current nodes to the elements that they are connected to.

Definition at line 1536 of file MooseMesh.h.

Referenced by addQuadratureNode(), nodeToElemMap(), and update().

◆ _node_to_elem_map_built

bool MooseMesh::_node_to_elem_map_built
protected

Definition at line 1537 of file MooseMesh.h.

Referenced by nodeToElemMap(), and update().

◆ _paired_boundary

std::vector<std::pair<BoundaryID, BoundaryID> > MooseMesh::_paired_boundary
protected

A vector holding the paired boundaries for a regular orthogonal mesh.

Definition at line 1614 of file MooseMesh.h.

Referenced by detectPairedSidesets(), and getPairedBoundaryMapping().

◆ _parallel_type

ParallelType MooseMesh::_parallel_type
protected

Can be set to DISTRIBUTED, REPLICATED, or DEFAULT.

Determines whether the underlying libMesh mesh is a ReplicatedMesh or DistributedMesh.

Definition at line 1449 of file MooseMesh.h.

Referenced by determineUseDistributedMesh(), getParallelType(), and setParallelType().

◆ _parallel_type_overridden

bool MooseMesh::_parallel_type_overridden
protected

Definition at line 1456 of file MooseMesh.h.

Referenced by determineUseDistributedMesh(), and isParallelTypeForced().

◆ _pars

const InputParameters& MooseBase::_pars
protectedinherited

The object's parameters.

Definition at line 366 of file MooseBase.h.

Referenced by AddFVICAction::act(), AddICAction::act(), CreateProblemAction::act(), CreateProblemDefaultAction::act(), SetupMeshAction::act(), ComposeTimeStepperAction::act(), SetupDebugAction::act(), AddAuxKernelAction::act(), AddPeriodicBCAction::act(), CommonOutputAction::act(), FunctorMaterial::addFunctorPropertyByBlocks(), BreakMeshByBlockGeneratorBase::BreakMeshByBlockGeneratorBase(), PiecewiseTabularBase::buildFromFile(), PNGOutput::calculateRescalingValues(), MooseBase::callMooseError(), MooseBase::connectControllableParams(), Console::Console(), MooseApp::copyInputs(), MaterialBase::declareADProperty(), MaterialBase::declareProperty(), FEProblemSolve::FEProblemSolve(), FunctionMaterialBase< is_ad >::FunctionMaterialBase(), FileMeshGenerator::generate(), MooseBase::getBase(), MooseBase::getCheckedPointerParam(), MaterialBase::getGenericZeroMaterialProperty(), MooseBase::getHitNode(), MeshGenerator::getMeshGeneratorNameFromParam(), MeshGenerator::getMeshGeneratorNamesFromParam(), MooseBase::getParam(), MooseBase::hasBase(), MeshGenerator::hasGenerateData(), AddVariableAction::init(), AdvancedOutput::initExecutionTypes(), Console::initialSetup(), MooseBase::isParamSetByUser(), MooseBase::isParamValid(), MultiApp::keepSolutionDuringRestore(), MooseBase::messagePrefix(), MooseBase::MooseBase(), MooseApp::outputMachineReadableData(), MooseBase::paramError(), MooseBase::parameters(), MooseBase::paramInfo(), MooseBase::paramWarning(), prepare(), Eigenvalue::prepareSolverOptions(), setCoordSystem(), setPartitionerHelper(), SetupMeshAction::setupMesh(), TransientBase::setupTimeIntegrator(), MooseApp::showInputs(), and MooseBase::uniqueName().

◆ _partitioner_name

MooseEnum MooseMesh::_partitioner_name
protected

The partitioner used on this mesh.

Definition at line 1467 of file MooseMesh.h.

Referenced by partitionerName(), and setPartitionerHelper().

◆ _partitioner_overridden

bool MooseMesh::_partitioner_overridden
protected

Definition at line 1468 of file MooseMesh.h.

Referenced by isPartitionerForced(), and setPartitionerHelper().

◆ _patch_size

unsigned int MooseMesh::_patch_size
protected

The number of nodes to consider in the NearestNode neighborhood.

Definition at line 1593 of file MooseMesh.h.

Referenced by getPatchSize().

◆ _patch_update_strategy

Moose::PatchUpdateType MooseMesh::_patch_update_strategy
protected

The patch update strategy.

Definition at line 1602 of file MooseMesh.h.

Referenced by getPatchUpdateStrategy(), MooseMesh(), and setPatchUpdateStrategy().

◆ _periodic_dim

std::map<unsigned int, std::vector<bool> > MooseMesh::_periodic_dim
private

A map of vectors indicating which dimensions are periodic in a regular orthogonal mesh for the specified variable numbers.

This data structure is populated by addPeriodicVariable.

Definition at line 1657 of file MooseMesh.h.

Referenced by addPeriodicVariable(), and isTranslatedPeriodic().

◆ _pg_moose_app

MooseApp& PerfGraphInterface::_pg_moose_app
protectedinherited

The MooseApp that owns the PerfGraph.

Definition at line 124 of file PerfGraphInterface.h.

Referenced by PerfGraphInterface::perfGraph().

◆ _prefix

const std::string PerfGraphInterface::_prefix
protectedinherited

A prefix to use for all sections.

Definition at line 127 of file PerfGraphInterface.h.

Referenced by PerfGraphInterface::timedSectionName().

◆ _provided_coord_blocks

std::vector<SubdomainName> MooseMesh::_provided_coord_blocks
private

Set for holding user-provided coordinate system type block names.

Definition at line 1917 of file MooseMesh.h.

Referenced by MooseMesh(), prepare(), and setCoordSystem().

◆ _quadrature_nodes

std::map<dof_id_type, Node *> MooseMesh::_quadrature_nodes
protected

Definition at line 1578 of file MooseMesh.h.

Referenced by addQuadratureNode(), clearQuadratureNodes(), and queryNodePtr().

◆ _refined_elements

std::unique_ptr<ConstElemPointerRange> MooseMesh::_refined_elements
protected

The elements that were just refined.

Definition at line 1506 of file MooseMesh.h.

Referenced by cacheChangedLists(), and refinedElementRange().

◆ _regular_orthogonal_mesh

bool MooseMesh::_regular_orthogonal_mesh
protected

Boolean indicating whether this mesh was detected to be regular and orthogonal.

Definition at line 1608 of file MooseMesh.h.

Referenced by addPeriodicVariable(), detectOrthogonalDimRanges(), GeneratedMesh::GeneratedMesh(), getPairedBoundaryMapping(), isRegularOrthogonal(), and prepared().

◆ _relationship_managers

std::vector<std::shared_ptr<RelationshipManager> > MooseMesh::_relationship_managers
protected

The list of active geometric relationship managers (bound to the underlying MeshBase object).

Definition at line 1442 of file MooseMesh.h.

◆ _restartable_app

MooseApp& Restartable::_restartable_app
protectedinherited

Reference to the application.

Definition at line 234 of file Restartable.h.

Referenced by Restartable::registerRestartableDataOnApp(), and Restartable::registerRestartableNameWithFilterOnApp().

◆ _restartable_read_only

const bool Restartable::_restartable_read_only
protectedinherited

Flag for toggling read only status (see ReporterData)

Definition at line 243 of file Restartable.h.

Referenced by Restartable::registerRestartableDataOnApp().

◆ _restartable_system_name

const std::string Restartable::_restartable_system_name
protectedinherited

The system name this object is in.

Definition at line 237 of file Restartable.h.

Referenced by Restartable::restartableName().

◆ _restartable_tid

const THREAD_ID Restartable::_restartable_tid
protectedinherited

The thread ID for this object.

Definition at line 240 of file Restartable.h.

Referenced by Restartable::declareRestartableDataHelper().

◆ _rz_coord_axis

unsigned int MooseMesh::_rz_coord_axis
private

Storage for RZ axis selection.

Definition at line 1904 of file MooseMesh.h.

Referenced by getAxisymmetricRadialCoord(), setAxisymmetricCoordAxis(), and setCoordData().

◆ _semilocal_node_list

std::set<Node *> MooseMesh::_semilocal_node_list
protected

Used for generating the semilocal node range.

Definition at line 1519 of file MooseMesh.h.

Referenced by isSemiLocal(), and updateActiveSemiLocalNodeRange().

◆ _skip_deletion_repartition_after_refine

bool MooseMesh::_skip_deletion_repartition_after_refine
protected

Whether or not skip remote deletion and repartition after uniform refinements.

Definition at line 1494 of file MooseMesh.h.

Referenced by setUniformRefineLevel(), and skipDeletionRepartitionAfterRefine().

◆ _skip_refine_when_use_split

bool MooseMesh::_skip_refine_when_use_split
protected

Whether or not to skip uniform refinements when using a pre-split mesh.

Definition at line 1491 of file MooseMesh.h.

Referenced by skipRefineWhenUseSplit().

◆ _sub_to_data

std::unordered_map<SubdomainID, SubdomainData> MooseMesh::_sub_to_data
private

Holds a map from subdomain ids to associated data.

Definition at line 1831 of file MooseMesh.h.

Referenced by cacheInfo(), getBlockConnectedBlocks(), getBoundaryConnectedBlocks(), getSubdomainBoundaryIds(), and isLowerD().

◆ _subdomain_id_to_rz_coord_axis

std::unordered_map<SubdomainID, std::pair<Point, RealVectorValue> > MooseMesh::_subdomain_id_to_rz_coord_axis
private

Map of subdomain ID to general axisymmetric axis.

Definition at line 1907 of file MooseMesh.h.

Referenced by getGeneralAxisymmetricCoordAxis(), setCoordData(), setGeneralAxisymmetricCoordAxes(), and usingGeneralAxisymmetricCoordAxes().

◆ _type

const std::string& MooseBase::_type
protectedinherited

◆ _uniform_refine_level

unsigned int MooseMesh::_uniform_refine_level
protected

The level of uniform refinement requested (set to zero if AMR is disabled)

Definition at line 1488 of file MooseMesh.h.

Referenced by setUniformRefineLevel(), and uniformRefineLevel().

◆ _use_distributed_mesh

bool MooseMesh::_use_distributed_mesh
protected

False by default.

Final value is determined by several factors including the 'distribution' setting in the input file, and whether or not the Mesh file is a Nemesis file.

Definition at line 1454 of file MooseMesh.h.

Referenced by buildMeshBaseObject(), buildTypedMesh(), detectPairedSidesets(), determineUseDistributedMesh(), errorIfDistributedMesh(), ghostGhostedBoundaries(), init(), isDistributedMesh(), and setPartitionerHelper().

◆ app_param

const std::string MooseBase::app_param = "_moose_app"
staticinherited

◆ kokkos_object_param

const std::string MooseBase::kokkos_object_param = "_kokkos_object"
staticinherited

The name of the parameter that indicates an object is a Kokkos functor.

Definition at line 64 of file MooseBase.h.

Referenced by MooseObject::isKokkosObject().

◆ moose_base_param

const std::string MooseBase::moose_base_param = "_moose_base"
staticinherited

The name of the parameter that contains the moose system base.

Definition at line 61 of file MooseBase.h.

Referenced by InputParameters::getBase(), InputParameters::hasBase(), and InputParameters::registerBase().

◆ name_param

const std::string MooseBase::name_param = "_object_name"
staticinherited

◆ type_param

const std::string MooseBase::type_param = "_type"
staticinherited

◆ unique_name_param

const std::string MooseBase::unique_name_param = "_unique_name"
staticinherited

The name of the parameter that contains the unique object name.

Definition at line 57 of file MooseBase.h.

Referenced by InputParameterWarehouse::addInputParameters(), AppFactory::create(), InputParameterWarehouse::removeInputParameters(), MooseBase::uniqueName(), and MooseBase::validParams().


The documentation for this class was generated from the following files: