MooseMesh wraps a libMesh::Mesh object and enhances its capabilities by caching additional data and storing more state. More...
#include <MooseMesh.h>
Classes | |
struct | bnd_elem_iterator |
The definition of the bnd_elem_iterator struct. More... | |
struct | bnd_node_iterator |
The definition of the bnd_node_iterator struct. More... | |
struct | const_bnd_elem_iterator |
The definition of the const_bnd_elem_iterator struct. More... | |
struct | const_bnd_node_iterator |
The definition of the const_bnd_node_iterator struct. More... | |
struct | const_elem_info_iterator |
The definition of the const_elem_info_iterator struct. More... | |
struct | const_face_info_iterator |
The definition of the const_face_info_iterator struct. More... | |
struct | elem_info_iterator |
The definition of the elem_info_iterator struct. More... | |
struct | face_info_iterator |
The definition of the face_info_iterator struct. More... | |
struct | MeshType |
struct | MeshType< DistributedMesh > |
struct | MeshType< ReplicatedMesh > |
struct | SubdomainData |
Public Types | |
enum | ParallelType { ParallelType::DEFAULT, ParallelType::REPLICATED, ParallelType::DISTRIBUTED } |
using | PeriodicNodeInfo = std::pair< const Node *, BoundaryID > |
Helper type for building periodic node maps. More... | |
Public Member Functions | |
MooseMesh (const InputParameters ¶meters) | |
MooseMesh (const MooseMesh &other_mesh) | |
MooseMesh ()=delete | |
MooseMesh & | operator= (const MooseMesh &other_mesh)=delete |
virtual | ~MooseMesh () |
virtual MooseMesh & | clone () const |
Clone method. More... | |
virtual std::unique_ptr< MooseMesh > | safeClone () const =0 |
A safer version of the clone() method that hands back an allocated object wrapped in a smart pointer. More... | |
void | determineUseDistributedMesh () |
Determine whether to use a distributed mesh. More... | |
std::unique_ptr< MeshBase > | buildMeshBaseObject (unsigned int dim=libMesh::invalid_uint) |
Method to construct a libMesh::MeshBase object that is normally set and used by the MooseMesh object during the "init()" phase. More... | |
template<typename T > | |
std::unique_ptr< T > | buildTypedMesh (unsigned int dim=libMesh::invalid_uint) |
Shortcut method to construct a unique pointer to a libMesh mesh instance. More... | |
void | setMeshBase (std::unique_ptr< MeshBase > mesh_base) |
Method to set the mesh_base object. More... | |
virtual void | init () |
Initialize the Mesh object. More... | |
virtual void | buildMesh ()=0 |
Must be overridden by child classes. More... | |
virtual unsigned int | dimension () const |
Returns MeshBase::mesh_dimension(), (not MeshBase::spatial_dimension()!) of the underlying libMesh mesh object. More... | |
virtual unsigned int | effectiveSpatialDimension () const |
Returns the effective spatial dimension determined by the coordinates actually used by the mesh. More... | |
unsigned int | getBlocksMaxDimension (const std::vector< SubdomainName > &blocks) const |
Returns the maximum element dimension on the given blocks. More... | |
std::vector< BoundaryID > | getBoundaryIDs (const Elem *const elem, const unsigned short int side) const |
Returns a vector of boundary IDs for the requested element on the requested side. More... | |
const Elem * | getLowerDElem (const Elem *, unsigned short int) const |
Returns a const pointer to a lower dimensional element that corresponds to a side of a higher dimensional element. More... | |
unsigned int | getHigherDSide (const Elem *elem) const |
Returns the local side ID of the interior parent aligned with the lower dimensional element. More... | |
const std::set< BoundaryID > & | getBoundaryIDs () const |
Returns a const reference to a set of all user-specified boundary IDs. More... | |
void | buildNodeList () |
Calls BoundaryInfo::build_node_list()/build_side_list() and makes separate copies of Nodes/Elems in those lists. More... | |
void | buildBndElemList () |
const std::map< dof_id_type, std::vector< dof_id_type > > & | nodeToElemMap () |
If not already created, creates a map from every node to all elements to which they are connected. More... | |
const std::map< dof_id_type, std::vector< dof_id_type > > & | nodeToActiveSemilocalElemMap () |
If not already created, creates a map from every node to all active semilocal elements to which they are connected. More... | |
virtual bnd_node_iterator | bndNodesBegin () |
Return iterators to the beginning/end of the boundary nodes list. More... | |
virtual bnd_node_iterator | bndNodesEnd () |
virtual bnd_elem_iterator | bndElemsBegin () |
Return iterators to the beginning/end of the boundary elements list. More... | |
virtual bnd_elem_iterator | bndElemsEnd () |
void | buildNodeListFromSideList () |
Calls BoundaryInfo::build_node_list_from_side_list(). More... | |
void | buildSideList (std::vector< dof_id_type > &el, std::vector< unsigned short int > &sl, std::vector< boundary_id_type > &il) |
Calls BoundaryInfo::build_side_list(). More... | |
std::vector< std::tuple< dof_id_type, unsigned short int, boundary_id_type > > | buildSideList () |
As above, but uses the non-deprecated std::tuple interface. More... | |
std::vector< std::tuple< dof_id_type, unsigned short int, boundary_id_type > > | buildActiveSideList () const |
Calls BoundaryInfo::build_active_side_list. More... | |
unsigned int | sideWithBoundaryID (const Elem *const elem, const BoundaryID boundary_id) const |
Calls BoundaryInfo::side_with_boundary_id(). More... | |
MeshBase::node_iterator | localNodesBegin () |
Calls local_nodes_begin/end() on the underlying libMesh mesh object. More... | |
MeshBase::node_iterator | localNodesEnd () |
MeshBase::const_node_iterator | localNodesBegin () const |
MeshBase::const_node_iterator | localNodesEnd () const |
MeshBase::element_iterator | activeLocalElementsBegin () |
Calls active_local_nodes_begin/end() on the underlying libMesh mesh object. More... | |
const MeshBase::element_iterator | activeLocalElementsEnd () |
MeshBase::const_element_iterator | activeLocalElementsBegin () const |
const MeshBase::const_element_iterator | activeLocalElementsEnd () const |
virtual dof_id_type | nNodes () const |
Calls n_nodes/elem() on the underlying libMesh mesh object. More... | |
virtual dof_id_type | nElem () const |
virtual dof_id_type | maxNodeId () const |
Calls max_node/elem_id() on the underlying libMesh mesh object. More... | |
virtual dof_id_type | maxElemId () const |
virtual const Node & | node (const dof_id_type i) const |
Various accessors (pointers/references) for Node "i". More... | |
virtual Node & | node (const dof_id_type i) |
virtual const Node & | nodeRef (const dof_id_type i) const |
virtual Node & | nodeRef (const dof_id_type i) |
virtual const Node * | nodePtr (const dof_id_type i) const |
virtual Node * | nodePtr (const dof_id_type i) |
virtual const Node * | queryNodePtr (const dof_id_type i) const |
virtual Node * | queryNodePtr (const dof_id_type i) |
virtual Elem * | elem (const dof_id_type i) |
Various accessors (pointers/references) for Elem "i". More... | |
virtual const Elem * | elem (const dof_id_type i) const |
virtual Elem * | elemPtr (const dof_id_type i) |
virtual const Elem * | elemPtr (const dof_id_type i) const |
virtual Elem * | queryElemPtr (const dof_id_type i) |
virtual const Elem * | queryElemPtr (const dof_id_type i) const |
bool | prepared () const |
Setter/getter for whether the mesh is prepared. More... | |
virtual void | prepared (bool state) |
void | needsPrepareForUse () |
If this method is called, we will call libMesh's prepare_for_use method when we call Moose's prepare method. More... | |
void | meshChanged () |
Declares that the MooseMesh has changed, invalidates cached data and rebuilds caches. More... | |
virtual void | onMeshChanged () |
Declares a callback function that is executed at the conclusion of meshChanged(). More... | |
void | cacheChangedLists () |
Cache information about what elements were refined and coarsened in the previous step. More... | |
ConstElemPointerRange * | refinedElementRange () const |
Return a range that is suitable for threaded execution over elements that were just refined. More... | |
ConstElemPointerRange * | coarsenedElementRange () const |
Return a range that is suitable for threaded execution over elements that were just coarsened. More... | |
const std::vector< const Elem * > & | coarsenedElementChildren (const Elem *elem) const |
Get the newly removed children element ids for an element that was just coarsened. More... | |
void | updateActiveSemiLocalNodeRange (std::set< dof_id_type > &ghosted_elems) |
Clears the "semi-local" node list and rebuilds it. More... | |
bool | isSemiLocal (Node *const node) const |
Returns true if the node is semi-local. More... | |
const std::unordered_map< boundary_id_type, std::unordered_set< dof_id_type > > & | getBoundariesToElems () const |
Returns a map of boundaries to ids of elements on the boundary. More... | |
const std::unordered_map< boundary_id_type, std::unordered_set< dof_id_type > > & | getBoundariesToActiveSemiLocalElemIds () const |
Returns a map of boundaries to ids of elements on the boundary. More... | |
std::unordered_set< dof_id_type > | getBoundaryActiveSemiLocalElemIds (BoundaryID bid) const |
Return all ids of elements which have a side which is part of a sideset. More... | |
std::unordered_set< dof_id_type > | getBoundaryActiveNeighborElemIds (BoundaryID bid) const |
Return all ids of neighbors of elements which have a side which is part of a sideset. More... | |
bool | isBoundaryFullyExternalToSubdomains (BoundaryID bid, const std::set< SubdomainID > &blk_group) const |
Returns whether a boundary (given by its id) is not crossing through a group of blocks, by which we mean that elements on both sides of the boundary are in those blocks. More... | |
const std::set< SubdomainID > & | meshSubdomains () const |
Returns a read-only reference to the set of subdomains currently present in the Mesh. More... | |
const std::set< BoundaryID > & | meshBoundaryIds () const |
Returns a read-only reference to the set of boundary IDs currently present in the Mesh. More... | |
const std::set< BoundaryID > & | meshSidesetIds () const |
Returns a read-only reference to the set of sidesets currently present in the Mesh. More... | |
const std::set< BoundaryID > & | meshNodesetIds () const |
Returns a read-only reference to the set of nodesets currently present in the Mesh. More... | |
void | setBoundaryToNormalMap (std::unique_ptr< std::map< BoundaryID, RealVectorValue >> boundary_map) |
Sets the mapping between BoundaryID and normal vector Is called by AddAllSideSetsByNormals. More... | |
void | setBoundaryToNormalMap (std::map< BoundaryID, RealVectorValue > *boundary_map) |
void | setMeshBoundaryIDs (std::set< BoundaryID > boundary_IDs) |
Sets the set of BoundaryIDs Is called by AddAllSideSetsByNormals. More... | |
const RealVectorValue & | getNormalByBoundaryID (BoundaryID id) const |
Returns the normal vector associated with a given BoundaryID. More... | |
bool | prepare (const MeshBase *mesh_to_clone) |
Calls prepare_for_use() if the underlying MeshBase object isn't prepared, then communicates various boundary information on parallel meshes. More... | |
void | update () |
Calls buildNodeListFromSideList(), buildNodeList(), and buildBndElemList(). More... | |
unsigned int | uniformRefineLevel () const |
Returns the level of uniform refinement requested (zero if AMR is disabled). More... | |
void | setUniformRefineLevel (unsigned int, bool deletion=true) |
Set uniform refinement level. More... | |
bool | skipDeletionRepartitionAfterRefine () const |
Return a flag indicating whether or not we should skip remote deletion and repartition after uniform refinements. More... | |
bool | skipRefineWhenUseSplit () const |
Whether or not skip uniform refinements when using a pre-split mesh. More... | |
void | addGhostedBoundary (BoundaryID boundary_id) |
This will add the boundary ids to be ghosted to this processor. More... | |
void | setGhostedBoundaryInflation (const std::vector< Real > &inflation) |
This sets the inflation amount for the bounding box for each partition for use in ghosting boundaries. More... | |
const std::set< unsigned int > & | getGhostedBoundaries () const |
Return a writable reference to the set of ghosted boundary IDs. More... | |
const std::vector< Real > & | getGhostedBoundaryInflation () const |
Return a writable reference to the _ghosted_boundaries_inflation vector. More... | |
void | ghostGhostedBoundaries () |
Actually do the ghosting of boundaries that need to be ghosted to this processor. More... | |
void | needGhostGhostedBoundaries (bool needghost) |
Whether or not we want to ghost ghosted boundaries. More... | |
unsigned int | getPatchSize () const |
Getter for the patch_size parameter. More... | |
unsigned int | getGhostingPatchSize () const |
Getter for the ghosting_patch_size parameter. More... | |
unsigned int | getMaxLeafSize () const |
Getter for the maximum leaf size parameter. More... | |
void | setPatchUpdateStrategy (Moose::PatchUpdateType patch_update_strategy) |
Set the patch size update strategy. More... | |
const Moose::PatchUpdateType & | getPatchUpdateStrategy () const |
Get the current patch update strategy. More... | |
BoundingBox | getInflatedProcessorBoundingBox (Real inflation_multiplier=0.01) const |
Get a (slightly inflated) processor bounding box. More... | |
operator libMesh::MeshBase & () | |
Implicit conversion operator from MooseMesh -> libMesh::MeshBase. More... | |
operator const libMesh::MeshBase & () const | |
MeshBase & | getMesh () |
Accessor for the underlying libMesh Mesh object. More... | |
MeshBase & | getMesh (const std::string &name) |
const MeshBase & | getMesh () const |
const MeshBase & | getMesh (const std::string &name) const |
const MeshBase * | getMeshPtr () const |
void | printInfo (std::ostream &os=libMesh::out, const unsigned int verbosity=0) const |
Calls print_info() on the underlying Mesh. More... | |
const std::set< SubdomainID > & | getNodeBlockIds (const Node &node) const |
Return list of blocks to which the given node belongs. More... | |
const std::vector< dof_id_type > & | getNodeList (boundary_id_type nodeset_id) const |
Return a writable reference to a vector of node IDs that belong to nodeset_id. More... | |
const Node * | addUniqueNode (const Point &p, Real tol=1e-6) |
Add a new node to the mesh. More... | |
Node * | addQuadratureNode (const Elem *elem, const unsigned short int side, const unsigned int qp, BoundaryID bid, const Point &point) |
Adds a fictitious "QuadratureNode". More... | |
Node * | getQuadratureNode (const Elem *elem, const unsigned short int side, const unsigned int qp) |
Get a specified quadrature node. More... | |
void | clearQuadratureNodes () |
Clear out any existing quadrature nodes. More... | |
BoundaryID | getBoundaryID (const BoundaryName &boundary_name) const |
Get the associated BoundaryID for the boundary name. More... | |
std::vector< BoundaryID > | getBoundaryIDs (const std::vector< BoundaryName > &boundary_name, bool generate_unknown=false) const |
Get the associated BoundaryID for the boundary names that are passed in. More... | |
SubdomainID | getSubdomainID (const SubdomainName &subdomain_name) const |
Get the associated subdomain ID for the subdomain name. More... | |
std::vector< SubdomainID > | getSubdomainIDs (const std::vector< SubdomainName > &subdomain_name) const |
Get the associated subdomainIDs for the subdomain names that are passed in. More... | |
void | setSubdomainName (SubdomainID subdomain_id, const SubdomainName &name) |
This method sets the name for subdomain_id to name . More... | |
const std::string & | getSubdomainName (SubdomainID subdomain_id) const |
Return the name of a block given an id. More... | |
std::vector< SubdomainName > | getSubdomainNames (const std::vector< SubdomainID > &subdomain_ids) const |
Get the associated subdomainNames for the subdomain ids that are passed in. More... | |
void | setBoundaryName (BoundaryID boundary_id, BoundaryName name) |
This method sets the boundary name of the boundary based on the id parameter. More... | |
const std::string & | getBoundaryName (BoundaryID boundary_id) |
Return the name of the boundary given the id. More... | |
void | buildPeriodicNodeMap (std::multimap< dof_id_type, dof_id_type > &periodic_node_map, unsigned int var_number, PeriodicBoundaries *pbs) const |
This routine builds a multimap of boundary ids to matching boundary ids across all periodic boundaries in the system. More... | |
void | buildPeriodicNodeSets (std::map< BoundaryID, std::set< dof_id_type >> &periodic_node_sets, unsigned int var_number, PeriodicBoundaries *pbs) const |
This routine builds a datastructure of node ids organized by periodic boundary ids. More... | |
Real | dimensionWidth (unsigned int component) const |
Returns the width of the requested dimension. More... | |
bool | detectOrthogonalDimRanges (Real tol=1e-6) |
This routine determines whether the Mesh is a regular orthogonal mesh (i.e. More... | |
void | addPeriodicVariable (unsigned int var_num, BoundaryID primary, BoundaryID secondary) |
For "regular orthogonal" meshes, determine if variable var_num is periodic with respect to the primary and secondary BoundaryIDs, record this fact in the _periodic_dim data structure. More... | |
bool | isTranslatedPeriodic (unsigned int nonlinear_var_num, unsigned int component) const |
Returns whether this generated mesh is periodic in the given dimension for the given variable. More... | |
RealVectorValue | minPeriodicVector (unsigned int nonlinear_var_num, Point p, Point q) const |
This function returns the minimum vector between two points on the mesh taking into account periodicity for the given variable number. More... | |
Real | minPeriodicDistance (unsigned int nonlinear_var_num, Point p, Point q) const |
This function returns the distance between two points on the mesh taking into account periodicity for the given variable number. More... | |
const std::pair< BoundaryID, BoundaryID > * | getPairedBoundaryMapping (unsigned int component) |
This function attempts to return the paired boundary ids for the given component. More... | |
void | buildRefinementAndCoarseningMaps (Assembly *assembly) |
Create the refinement and coarsening maps necessary for projection of stateful material properties when using adaptivity. More... | |
const std::vector< std::vector< QpMap > > & | getRefinementMap (const Elem &elem, int parent_side, int child, int child_side) |
Get the refinement map for a given element type. More... | |
const std::vector< std::pair< unsigned int, QpMap > > & | getCoarseningMap (const Elem &elem, int input_side) |
Get the coarsening map for a given element type. More... | |
void | changeBoundaryId (const boundary_id_type old_id, const boundary_id_type new_id, bool delete_prev) |
Change all the boundary IDs for a given side from old_id to new_id. More... | |
const std::set< BoundaryID > & | getSubdomainBoundaryIds (const SubdomainID subdomain_id) const |
Get the list of boundary ids associated with the given subdomain id. More... | |
std::set< BoundaryID > | getSubdomainInterfaceBoundaryIds (const SubdomainID subdomain_id) const |
Get the list of boundaries that contact the given subdomain. More... | |
std::set< SubdomainID > | getBoundaryConnectedBlocks (const BoundaryID bid) const |
Get the list of subdomains associated with the given boundary. More... | |
std::set< SubdomainID > | getBoundaryConnectedSecondaryBlocks (const BoundaryID bid) const |
Get the list of subdomains associated with the given boundary of its secondary side. More... | |
std::set< SubdomainID > | getInterfaceConnectedBlocks (const BoundaryID bid) const |
Get the list of subdomains contacting the given boundary. More... | |
const std::set< SubdomainID > & | getBlockConnectedBlocks (const SubdomainID subdomain_id) const |
Get the list of subdomains neighboring a given subdomain. More... | |
bool | isBoundaryNode (dof_id_type node_id) const |
Returns true if the requested node is in the list of boundary nodes, false otherwise. More... | |
bool | isBoundaryNode (dof_id_type node_id, BoundaryID bnd_id) const |
Returns true if the requested node is in the list of boundary nodes for the specified boundary, false otherwise. More... | |
bool | isBoundaryElem (dof_id_type elem_id) const |
Returns true if the requested element is in the list of boundary elements, false otherwise. More... | |
bool | isBoundaryElem (dof_id_type elem_id, BoundaryID bnd_id) const |
Returns true if the requested element is in the list of boundary elements for the specified boundary, false otherwise. More... | |
void | errorIfDistributedMesh (std::string name) const |
Generate a unified error message if the underlying libMesh mesh is a DistributedMesh. More... | |
bool | isDistributedMesh () const |
Returns the final Mesh distribution type. More... | |
bool | isParallelTypeForced () const |
Tell the user if the distribution was overriden for any reason. More... | |
void | setParallelType (ParallelType parallel_type) |
Allow to change parallel type. More... | |
const MooseEnum & | partitionerName () const |
bool | isPartitionerForced () const |
Tell the user if the partitioner was overriden for any reason. More... | |
void | allowRecovery (bool allow) |
Set whether or not this mesh is allowed to read a recovery file. More... | |
void | setCustomPartitioner (Partitioner *partitioner) |
Setter for custom partitioner. More... | |
bool | isRegularOrthogonal () |
Getter to query if the mesh was detected to be regular and orthogonal. More... | |
bool | hasSecondOrderElements () |
check if the mesh has SECOND order elements More... | |
virtual std::unique_ptr< PointLocatorBase > | getPointLocator () const |
Proxy function to get a (sub)PointLocator from either the underlying libMesh mesh (default), or to allow derived meshes to return a custom point locator. More... | |
virtual std::string | getFileName () const |
Returns the name of the mesh file read to produce this mesh if any or an empty string otherwise. More... | |
void | needsRemoteElemDeletion (bool need_delete) |
Set whether we need to delete remote elements. More... | |
bool | needsRemoteElemDeletion () const |
Whether we need to delete remote elements. More... | |
void | allowRemoteElementRemoval (bool allow_removal) |
Set whether to allow remote element removal. More... | |
bool | allowRemoteElementRemoval () const |
Whether we are allow remote element removal. More... | |
void | deleteRemoteElements () |
Delete remote elements. More... | |
bool | hasMeshBase () const |
Whether mesh base object was constructed or not. More... | |
bool | hasElementID (const std::string &id_name) const |
Whether mesh has an extra element integer with a given name. More... | |
unsigned int | getElementIDIndex (const std::string &id_name) const |
Return the accessing integer for an extra element integer with its name. More... | |
dof_id_type | maxElementID (unsigned int elem_id_index) const |
Return the maximum element ID for an extra element integer with its accessing index. More... | |
dof_id_type | minElementID (unsigned int elem_id_index) const |
Return the minimum element ID for an extra element integer with its accessing index. More... | |
bool | areElemIDsIdentical (const std::string &id_name1, const std::string &id_name2) const |
Whether or not two extra element integers are identical. More... | |
std::set< dof_id_type > | getAllElemIDs (unsigned int elem_id_index) const |
Return all the unique element IDs for an extra element integer with its index. More... | |
std::set< dof_id_type > | getElemIDsOnBlocks (unsigned int elem_id_index, const std::set< SubdomainID > &blks) const |
Return all the unique element IDs for an extra element integer with its index on a set of subdomains. More... | |
std::unordered_map< dof_id_type, std::set< dof_id_type > > | getElemIDMapping (const std::string &from_id_name, const std::string &to_id_name) const |
void | cacheFaceInfoVariableOwnership () const |
Cache if variables live on the elements connected by the FaceInfo objects. More... | |
void | cacheFVElementalDoFs () const |
Cache the DoF indices for FV variables on each element. More... | |
void | computeFiniteVolumeCoords () const |
Compute the face coordinate value for all FaceInfo and ElemInfo objects. More... | |
void | isDisplaced (bool is_displaced) |
Set whether this mesh is displaced. More... | |
bool | isDisplaced () const |
whether this mesh is displaced More... | |
const std::map< boundary_id_type, std::vector< dof_id_type > > & | nodeSetNodes () const |
Moose::CoordinateSystemType | getCoordSystem (SubdomainID sid) const |
Get the coordinate system type, e.g. More... | |
Moose::CoordinateSystemType | getUniqueCoordSystem () const |
Get the coordinate system from the mesh, it must be the same in all subdomains otherwise this will error. More... | |
const std::map< SubdomainID, Moose::CoordinateSystemType > & | getCoordSystem () const |
Get the map from subdomain ID to coordinate system type, e.g. More... | |
void | setCoordSystem (const std::vector< SubdomainName > &blocks, const MultiMooseEnum &coord_sys) |
Set the coordinate system for the provided blocks to coord_sys . More... | |
void | setAxisymmetricCoordAxis (const MooseEnum &rz_coord_axis) |
For axisymmetric simulations, set the symmetry coordinate axis. More... | |
void | setGeneralAxisymmetricCoordAxes (const std::vector< SubdomainName > &blocks, const std::vector< std::pair< Point, RealVectorValue >> &axes) |
Sets the general coordinate axes for axisymmetric blocks. More... | |
const std::pair< Point, RealVectorValue > & | getGeneralAxisymmetricCoordAxis (SubdomainID subdomain_id) const |
Gets the general axisymmetric coordinate axis for a block. More... | |
bool | usingGeneralAxisymmetricCoordAxes () const |
Returns true if general axisymmetric coordinate axes are being used. More... | |
unsigned int | getAxisymmetricRadialCoord () const |
Returns the desired radial direction for RZ coordinate transformation. More... | |
void | checkCoordinateSystems () |
Performs a sanity check for every element in the mesh. More... | |
void | setCoordData (const MooseMesh &other_mesh) |
Set the coordinate system data to that of other_mesh . More... | |
void | markFiniteVolumeInfoDirty () |
Mark the finite volume information as dirty. More... | |
bool | isFiniteVolumeInfoDirty () const |
MooseAppCoordTransform & | coordTransform () |
const MooseUnits & | lengthUnit () const |
const std::unordered_map< std::pair< const Elem *, unsigned short int >, const Elem * > & | getLowerDElemMap () const |
This function attempts to return the map from a high-order element side to its corresponding lower-d element. More... | |
bool | isSplit () const |
void | buildFiniteVolumeInfo () const |
Builds the face and elem info vectors that store meta-data needed for looping over and doing calculations based on mesh faces and elements in a finite volume setting. More... | |
void | setupFiniteVolumeMeshData () const |
Sets up the additional data needed for finite volume computations. More... | |
void | doingPRefinement (bool doing_p_refinement) |
Indicate whether the kind of adaptivity we're doing is p-refinement. More... | |
bool | doingPRefinement () const |
Query whether we have p-refinement. More... | |
const std::vector< QpMap > & | getPRefinementMap (const Elem &elem) const |
Get the map describing for each volumetric quadrature point (qp) on the refined level which qp on the previous coarser level the fine qp is closest to. More... | |
const std::vector< QpMap > & | getPRefinementSideMap (const Elem &elem) const |
Get the map describing for each side quadrature point (qp) on the refined level which qp on the previous coarser level the fine qp is closest to. More... | |
const std::vector< QpMap > & | getPCoarseningMap (const Elem &elem) const |
Get the map describing for each volumetric quadrature point (qp) on the coarse level which qp on the previous finer level the coarse qp is closest to. More... | |
const std::vector< QpMap > & | getPCoarseningSideMap (const Elem &elem) const |
Get the map describing for each side quadrature point (qp) on the coarse level which qp on the previous finer level the coarse qp is closest to. More... | |
void | buildPRefinementAndCoarseningMaps (Assembly *assembly) |
bool | isLowerD (const SubdomainID subdomain_id) const |
bool | hasLowerD () const |
virtual bool | enabled () const |
Return the enabled status of the object. More... | |
MooseApp & | getMooseApp () const |
Get the MooseApp this class is associated with. More... | |
const std::string & | type () const |
Get the type of this class. More... | |
virtual const std::string & | name () const |
Get the name of the class. More... | |
std::string | typeAndName () const |
Get the class's combined type and name; useful in error handling. More... | |
MooseObjectParameterName | uniqueParameterName (const std::string ¶meter_name) const |
The unique parameter name of a valid parameter of this object for accessing parameter controls. More... | |
const InputParameters & | parameters () const |
Get the parameters of the object. More... | |
MooseObjectName | uniqueName () const |
The unique name for accessing input parameters of this object in the InputParameterWarehouse. More... | |
template<typename T > | |
const T & | getParam (const std::string &name) const |
Retrieve a parameter for the object. More... | |
template<typename T1 , typename T2 > | |
std::vector< std::pair< T1, T2 > > | getParam (const std::string ¶m1, const std::string ¶m2) const |
Retrieve two parameters and provide pair of parameters for the object. More... | |
template<typename T > | |
const T & | getRenamedParam (const std::string &old_name, const std::string &new_name) const |
Retrieve a renamed parameter for the object. More... | |
template<typename T > | |
T | getCheckedPointerParam (const std::string &name, const std::string &error_string="") const |
Verifies that the requested parameter exists and is not NULL and returns it to the caller. More... | |
bool | isParamValid (const std::string &name) const |
Test if the supplied parameter is valid. More... | |
bool | isParamSetByUser (const std::string &nm) const |
Test if the supplied parameter is set by a user, as opposed to not set or set to default. More... | |
template<typename... Args> | |
void | paramError (const std::string ¶m, Args... args) const |
Emits an error prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message. More... | |
template<typename... Args> | |
void | paramWarning (const std::string ¶m, Args... args) const |
Emits a warning prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message. More... | |
template<typename... Args> | |
void | paramInfo (const std::string ¶m, Args... args) const |
Emits an informational message prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message. More... | |
std::string | objectErrorPrefix (const std::string &error_type) const |
A descriptive prefix for errors for an object. More... | |
void | connectControllableParams (const std::string ¶meter, const std::string &object_type, const std::string &object_name, const std::string &object_parameter) const |
Connect controllable parameter of this action with the controllable parameters of the objects added by this action. More... | |
template<typename... Args> | |
void | mooseError (Args &&... args) const |
Emits an error prefixed with object name and type. More... | |
template<typename... Args> | |
void | mooseErrorNonPrefixed (Args &&... args) const |
Emits an error without the prefixing included in mooseError(). More... | |
template<typename... Args> | |
void | mooseWarning (Args &&... args) const |
Emits a warning prefixed with object name and type. More... | |
template<typename... Args> | |
void | mooseWarningNonPrefixed (Args &&... args) const |
Emits a warning without the prefixing included in mooseWarning(). More... | |
template<typename... Args> | |
void | mooseDeprecated (Args &&... args) const |
template<typename... Args> | |
void | mooseInfo (Args &&... args) const |
std::string | errorPrefix (const std::string &error_type) const |
A descriptive prefix for errors for this object: More... | |
const Parallel::Communicator & | comm () const |
processor_id_type | n_processors () const |
processor_id_type | processor_id () const |
std::string | getDataFileName (const std::string ¶m) const |
Returns the path of a data file for a given FileName type parameter, searching (in the following order) More... | |
std::string | getDataFileNameByName (const std::string &name, const std::string *param=nullptr) const |
Returns the path of a data file for a given relative file path. More... | |
PerfGraph & | perfGraph () |
Get the PerfGraph. More... | |
ConstElemRange * | getActiveLocalElementRange () |
Return pointers to range objects for various types of ranges (local nodes, boundary elems, etc.). More... | |
NodeRange * | getActiveNodeRange () |
SemiLocalNodeRange * | getActiveSemiLocalNodeRange () const |
ConstNodeRange * | getLocalNodeRange () |
StoredRange< MooseMesh::const_bnd_node_iterator, const BndNode * > * | getBoundaryNodeRange () |
StoredRange< MooseMesh::const_bnd_elem_iterator, const BndElement * > * | getBoundaryElementRange () |
virtual Real | getMinInDimension (unsigned int component) const |
Returns the min or max of the requested dimension respectively. More... | |
virtual Real | getMaxInDimension (unsigned int component) const |
bool | isCustomPartitionerRequested () const |
Setter and getter for _custom_partitioner_requested. More... | |
void | setIsCustomPartitionerRequested (bool cpr) |
unsigned int | nFace () const |
accessors for the FaceInfo objects More... | |
const std::vector< const FaceInfo * > & | faceInfo () const |
Accessor for local FaceInfo objects. More... | |
face_info_iterator | ownedFaceInfoBegin () |
Iterators to owned faceInfo objects. More... | |
face_info_iterator | ownedFaceInfoEnd () |
elem_info_iterator | ownedElemInfoBegin () |
Iterators to owned faceInfo objects. More... | |
elem_info_iterator | ownedElemInfoEnd () |
const FaceInfo * | faceInfo (const Elem *elem, unsigned int side) const |
Accessor for the local FaceInfo object on the side of one element. Returns null if ghosted. More... | |
const ElemInfo & | elemInfo (const dof_id_type id) const |
Accessor for the elemInfo object for a given element ID. More... | |
const std::vector< const ElemInfo * > & | elemInfoVector () const |
Accessor for the element info objects owned by this process. More... | |
const std::vector< FaceInfo > & | allFaceInfo () const |
Accessor for all FaceInfo objects. More... | |
Static Public Member Functions | |
static InputParameters | validParams () |
Typical "Moose-style" constructor and copy constructor. More... | |
static MooseEnum | partitioning () |
returns MooseMesh partitioning options so other classes can use it More... | |
static MooseEnum | elemTypes () |
returns MooseMesh element type options More... | |
static void | setSubdomainName (MeshBase &mesh, SubdomainID subdomain_id, const SubdomainName &name) |
This method sets the name for subdomain_id on the provided mesh to name . More... | |
static void | changeBoundaryId (MeshBase &mesh, const boundary_id_type old_id, const boundary_id_type new_id, bool delete_prev) |
Change all the boundary IDs for a given side from old_id to new_id for the given mesh . More... | |
static void | setPartitioner (MeshBase &mesh_base, MooseEnum &partitioner, bool use_distributed_mesh, const InputParameters ¶ms, MooseObject &context_obj) |
Method for setting the partitioner on the passed in mesh_base object. More... | |
Public Attributes | |
const ConsoleStream | _console |
An instance of helper class to write streams to the Console objects. More... | |
Protected Types | |
enum | { X = 0, Y, Z } |
Convenience enums. More... | |
enum | { MIN = 0, MAX } |
typedef std::vector< BndNode * >::iterator | bnd_node_iterator_imp |
typedef std::vector< BndNode * >::const_iterator | const_bnd_node_iterator_imp |
typedef std::vector< BndElement * >::iterator | bnd_elem_iterator_imp |
typedef std::vector< BndElement * >::const_iterator | const_bnd_elem_iterator_imp |
Protected Member Functions | |
void | cacheInfo () |
void | freeBndNodes () |
void | freeBndElems () |
void | setPartitionerHelper (MeshBase *mesh=nullptr) |
template<typename T , typename... Args> | |
T & | declareRestartableData (const std::string &data_name, Args &&... args) |
Declare a piece of data as "restartable" and initialize it. More... | |
template<typename T , typename... Args> | |
ManagedValue< T > | declareManagedRestartableDataWithContext (const std::string &data_name, void *context, Args &&... args) |
Declares a piece of "managed" restartable data and initialize it. More... | |
template<typename T , typename... Args> | |
const T & | getRestartableData (const std::string &data_name) const |
Declare a piece of data as "restartable" and initialize it Similar to declareRestartableData but returns a const reference to the object. More... | |
template<typename T , typename... Args> | |
T & | declareRestartableDataWithContext (const std::string &data_name, void *context, Args &&... args) |
Declare a piece of data as "restartable" and initialize it. More... | |
template<typename T , typename... Args> | |
T & | declareRecoverableData (const std::string &data_name, Args &&... args) |
Declare a piece of data as "recoverable" and initialize it. More... | |
template<typename T , typename... Args> | |
T & | declareRestartableDataWithObjectName (const std::string &data_name, const std::string &object_name, Args &&... args) |
Declare a piece of data as "restartable". More... | |
template<typename T , typename... Args> | |
T & | declareRestartableDataWithObjectNameWithContext (const std::string &data_name, const std::string &object_name, void *context, Args &&... args) |
Declare a piece of data as "restartable". More... | |
std::string | restartableName (const std::string &data_name) const |
Gets the name of a piece of restartable data given a data name, adding the system name and object name prefix. More... | |
PerfID | registerTimedSection (const std::string §ion_name, const unsigned int level) const |
Call to register a named section for timing. More... | |
PerfID | registerTimedSection (const std::string §ion_name, const unsigned int level, const std::string &live_message, const bool print_dots=true) const |
Call to register a named section for timing. More... | |
std::string | timedSectionName (const std::string §ion_name) const |
Protected Attributes | |
std::vector< std::unique_ptr< GhostingFunctor > > | _ghosting_functors |
Deprecated (DO NOT USE) More... | |
std::vector< std::shared_ptr< RelationshipManager > > | _relationship_managers |
The list of active geometric relationship managers (bound to the underlying MeshBase object). More... | |
bool | _built_from_other_mesh = false |
Whether or not this mesh was built from another mesh. More... | |
ParallelType | _parallel_type |
Can be set to DISTRIBUTED, REPLICATED, or DEFAULT. More... | |
bool | _use_distributed_mesh |
False by default. More... | |
bool | _distribution_overridden |
bool | _parallel_type_overridden |
std::unique_ptr< libMesh::MeshBase > | _mesh |
Pointer to underlying libMesh mesh object. More... | |
MooseEnum | _partitioner_name |
The partitioner used on this mesh. More... | |
bool | _partitioner_overridden |
std::unique_ptr< Partitioner > | _custom_partitioner |
The custom partitioner. More... | |
bool | _custom_partitioner_requested |
unsigned int | _uniform_refine_level |
The level of uniform refinement requested (set to zero if AMR is disabled) More... | |
bool | _skip_refine_when_use_split |
Whether or not to skip uniform refinements when using a pre-split mesh. More... | |
bool | _skip_deletion_repartition_after_refine |
Whether or not skip remote deletion and repartition after uniform refinements. More... | |
bool | _is_changed |
true if mesh is changed (i.e. after adaptivity step) More... | |
bool | _is_nemesis |
True if a Nemesis Mesh was read in. More... | |
bool | _moose_mesh_prepared = false |
True if prepare has been called on the mesh. More... | |
std::unique_ptr< ConstElemPointerRange > | _refined_elements |
The elements that were just refined. More... | |
std::unique_ptr< ConstElemPointerRange > | _coarsened_elements |
The elements that were just coarsened. More... | |
std::map< const Elem *, std::vector< const Elem * > > | _coarsened_element_children |
Map of Parent elements to child elements for elements that were just coarsened. More... | |
std::set< Node * > | _semilocal_node_list |
Used for generating the semilocal node range. More... | |
std::unique_ptr< ConstElemRange > | _active_local_elem_range |
A range for use with threading. More... | |
std::unique_ptr< SemiLocalNodeRange > | _active_semilocal_node_range |
std::unique_ptr< NodeRange > | _active_node_range |
std::unique_ptr< ConstNodeRange > | _local_node_range |
std::unique_ptr< StoredRange< MooseMesh::const_bnd_node_iterator, const BndNode * > > | _bnd_node_range |
std::unique_ptr< StoredRange< MooseMesh::const_bnd_elem_iterator, const BndElement * > > | _bnd_elem_range |
std::map< dof_id_type, std::vector< dof_id_type > > | _node_to_elem_map |
A map of all of the current nodes to the elements that they are connected to. More... | |
bool | _node_to_elem_map_built |
std::map< dof_id_type, std::vector< dof_id_type > > | _node_to_active_semilocal_elem_map |
A map of all of the current nodes to the active elements that they are connected to. More... | |
bool | _node_to_active_semilocal_elem_map_built |
std::set< SubdomainID > | _mesh_subdomains |
A set of subdomain IDs currently present in the mesh. More... | |
std::unique_ptr< std::map< BoundaryID, RealVectorValue > > | _boundary_to_normal_map |
The boundary to normal map - valid only when AddAllSideSetsByNormals is active. More... | |
std::vector< BndNode * > | _bnd_nodes |
array of boundary nodes More... | |
std::map< boundary_id_type, std::set< dof_id_type > > | _bnd_node_ids |
Map of sets of node IDs in each boundary. More... | |
std::vector< BndElement * > | _bnd_elems |
array of boundary elems More... | |
std::unordered_map< boundary_id_type, std::unordered_set< dof_id_type > > | _bnd_elem_ids |
Map of set of elem IDs connected to each boundary. More... | |
std::map< dof_id_type, Node * > | _quadrature_nodes |
std::map< dof_id_type, std::map< unsigned int, std::map< dof_id_type, Node * > > > | _elem_to_side_to_qp_to_quadrature_nodes |
std::vector< BndNode > | _extra_bnd_nodes |
std::map< dof_id_type, std::set< SubdomainID > > | _block_node_list |
list of nodes that belongs to a specified block (domain) More... | |
std::map< boundary_id_type, std::vector< dof_id_type > > | _node_set_nodes |
list of nodes that belongs to a specified nodeset: indexing [nodeset_id] -> [array of node ids] More... | |
std::set< unsigned int > | _ghosted_boundaries |
std::vector< Real > | _ghosted_boundaries_inflation |
unsigned int | _patch_size |
The number of nodes to consider in the NearestNode neighborhood. More... | |
unsigned int | _ghosting_patch_size |
The number of nearest neighbors to consider for ghosting purposes when iteration patch update strategy is used. More... | |
unsigned int | _max_leaf_size |
Moose::PatchUpdateType | _patch_update_strategy |
The patch update strategy. More... | |
std::vector< Node * > | _node_map |
Vector of all the Nodes in the mesh for determining when to add a new point. More... | |
bool | _regular_orthogonal_mesh |
Boolean indicating whether this mesh was detected to be regular and orthogonal. More... | |
std::vector< std::vector< Real > > | _bounds |
The bounds in each dimension of the mesh for regular orthogonal meshes. More... | |
std::vector< std::pair< BoundaryID, BoundaryID > > | _paired_boundary |
A vector holding the paired boundaries for a regular orthogonal mesh. More... | |
const bool | _is_split |
Whether or not we are using a (pre-)split mesh (automatically DistributedMesh) More... | |
const bool & | _enabled |
Reference to the "enable" InputParameters, used by Controls for toggling on/off MooseObjects. More... | |
MooseApp & | _app |
The MOOSE application this is associated with. More... | |
const std::string & | _type |
The type of this class. More... | |
const std::string & | _name |
The name of this class, reference to value stored in InputParameters. More... | |
const InputParameters & | _pars |
Parameters of this object, references the InputParameters stored in the InputParametersWarehouse. More... | |
Factory & | _factory |
The Factory associated with the MooseApp. More... | |
ActionFactory & | _action_factory |
Builds Actions. More... | |
const Parallel::Communicator & | _communicator |
MooseApp & | _restartable_app |
Reference to the application. More... | |
const std::string | _restartable_system_name |
The system name this object is in. More... | |
const THREAD_ID | _restartable_tid |
The thread ID for this object. More... | |
const bool | _restartable_read_only |
Flag for toggling read only status (see ReporterData) More... | |
MooseApp & | _pg_moose_app |
The MooseApp that owns the PerfGraph. More... | |
const std::string | _prefix |
A prefix to use for all sections. More... | |
std::set< BoundaryID > | _mesh_boundary_ids |
A set of boundary IDs currently present in the mesh. More... | |
std::set< BoundaryID > | _mesh_sideset_ids |
std::set< BoundaryID > | _mesh_nodeset_ids |
Private Member Functions | |
void | detectPairedSidesets () |
This routine detects paired sidesets of a regular orthogonal mesh (.i.e. More... | |
void | buildRefinementMap (const Elem &elem, QBase &qrule, QBase &qrule_face, int parent_side, int child, int child_side) |
Build the refinement map for a given element type. More... | |
void | buildCoarseningMap (const Elem &elem, QBase &qrule, QBase &qrule_face, int input_side) |
Build the coarsening map for a given element type. More... | |
void | mapPoints (const std::vector< Point > &from, const std::vector< Point > &to, std::vector< QpMap > &qp_map) |
Find the closest points that map "from" to "to" and fill up "qp_map". More... | |
void | findAdaptivityQpMaps (const Elem *template_elem, QBase &qrule, QBase &qrule_face, std::vector< std::vector< QpMap >> &refinement_map, std::vector< std::pair< unsigned int, QpMap >> &coarsen_map, int parent_side, int child, int child_side) |
Given an elem type, get maps that tell us what qp's are closest to each other between a parent and it's children. More... | |
void | buildHRefinementAndCoarseningMaps (Assembly *assembly) |
const std::vector< QpMap > & | getPRefinementMapHelper (const Elem &elem, const std::map< std::pair< ElemType, unsigned int >, std::vector< QpMap >> &) const |
const std::vector< QpMap > & | getPCoarseningMapHelper (const Elem &elem, const std::map< std::pair< ElemType, unsigned int >, std::vector< QpMap >> &) const |
void | updateCoordTransform () |
Update the coordinate transformation object based on our coordinate system data. More... | |
void | checkDuplicateSubdomainNames () |
Loop through all subdomain IDs and check if there is name duplication used for the subdomains with same ID. More... | |
void | buildElemIDInfo () |
Build extra data for faster access to the information of extra element integers. More... | |
void | buildLowerDMesh () |
Build lower-d mesh for all sides. More... | |
Private Attributes | |
std::unordered_map< dof_id_type, ElemInfo > | _elem_to_elem_info |
Map connecting elems with their corresponding ElemInfo, we use the element ID as the key. More... | |
std::vector< const ElemInfo * > | _elem_info |
Holds only those ElemInfo objects that have processor_id equal to this process's id, e.g. More... | |
std::vector< FaceInfo > | _all_face_info |
FaceInfo object storing information for face based loops. More... | |
std::vector< const FaceInfo * > | _face_info |
Holds only those FaceInfo objects that have processor_id equal to this process's id, e.g. More... | |
std::unordered_map< std::pair< const Elem *, unsigned int >, FaceInfo * > | _elem_side_to_face_info |
Map from elem-side pair to FaceInfo. More... | |
bool | _finite_volume_info_dirty = true |
bool | _linear_finite_volume_dofs_cached = false |
std::map< unsigned int, std::vector< bool > > | _periodic_dim |
A map of vectors indicating which dimensions are periodic in a regular orthogonal mesh for the specified variable numbers. More... | |
RealVectorValue | _half_range |
A convenience vector used to hold values in each dimension representing half of the range. More... | |
std::vector< Node * > | _extreme_nodes |
A vector containing the nodes at the corners of a regular orthogonal mesh. More... | |
std::map< std::pair< int, ElemType >, std::vector< std::vector< QpMap > > > | _elem_type_to_refinement_map |
Holds mappings for volume to volume and parent side to child side Map key: More... | |
std::map< std::pair< ElemType, unsigned int >, std::vector< QpMap > > | _elem_type_to_p_refinement_map |
std::map< std::pair< ElemType, unsigned int >, std::vector< QpMap > > | _elem_type_to_p_refinement_side_map |
std::map< ElemType, std::map< std::pair< int, int >, std::vector< std::vector< QpMap > > > > | _elem_type_to_child_side_refinement_map |
Holds mappings for "internal" child sides to parent volume. The second key is (child, child_side). More... | |
std::map< std::pair< int, ElemType >, std::vector< std::pair< unsigned int, QpMap > > > | _elem_type_to_coarsening_map |
Holds mappings for volume to volume and parent side to child side Map key: More... | |
std::map< std::pair< ElemType, unsigned int >, std::vector< QpMap > > | _elem_type_to_p_coarsening_map |
std::map< std::pair< ElemType, unsigned int >, std::vector< QpMap > > | _elem_type_to_p_coarsening_side_map |
std::unordered_map< SubdomainID, SubdomainData > | _sub_to_data |
Holds a map from subdomain ids to associated data. More... | |
std::unordered_map< SubdomainID, std::set< BoundaryID > > | _neighbor_subdomain_boundary_ids |
Holds a map from neighbor subomdain ids to the boundary ids that are attached to it. More... | |
std::unordered_map< std::pair< const Elem *, unsigned short int >, const Elem * > | _higher_d_elem_side_to_lower_d_elem |
Holds a map from a high-order element side to its corresponding lower-d element. More... | |
std::unordered_map< const Elem *, unsigned short int > | _lower_d_elem_to_higher_d_elem_side |
bool | _has_lower_d |
Whether there are any lower-dimensional blocks that are manifolds of higher-dimensional block faces. More... | |
bool | _allow_recovery |
Whether or not this Mesh is allowed to read a recovery file. More... | |
bool | _construct_node_list_from_side_list |
Whether or not to allow generation of nodesets from sidesets. More... | |
bool | _need_delete |
Whether we need to delete remote elements after init'ing the EquationSystems. More... | |
bool | _allow_remote_element_removal |
Whether to allow removal of remote elements. More... | |
std::set< Elem * > | _ghost_elems_from_ghost_boundaries |
Set of elements ghosted by ghostGhostedBoundaries. More... | |
bool | _need_ghost_ghosted_boundaries |
A parallel mesh generator such as DistributedRectilinearMeshGenerator already make everything ready. More... | |
std::vector< std::unordered_map< SubdomainID, std::set< dof_id_type > > > | _block_id_mapping |
Unique element integer IDs for each subdomain and each extra element integers. More... | |
std::vector< dof_id_type > | _max_ids |
Maximum integer ID for each extra element integer. More... | |
std::vector< dof_id_type > | _min_ids |
Minimum integer ID for each extra element integer. More... | |
std::vector< std::vector< bool > > | _id_identical_flag |
Flags to indicate whether or not any two extra element integers are the same. More... | |
bool | _is_displaced |
Whether this mesh is displaced. More... | |
std::map< SubdomainID, Moose::CoordinateSystemType > | _coord_sys |
Type of coordinate system per subdomain. More... | |
unsigned int | _rz_coord_axis |
Storage for RZ axis selection. More... | |
std::unordered_map< SubdomainID, std::pair< Point, RealVectorValue > > | _subdomain_id_to_rz_coord_axis |
Map of subdomain ID to general axisymmetric axis. More... | |
std::unique_ptr< MooseAppCoordTransform > | _coord_transform |
A coordinate transformation object that describes how to transform this problem's coordinate system into the canonical/reference coordinate system. More... | |
bool | _coord_system_set |
Whether the coordinate system has been set. More... | |
std::vector< SubdomainName > | _provided_coord_blocks |
Set for holding user-provided coordinate system type block names. More... | |
bool | _doing_p_refinement |
Whether we have p-refinement (as opposed to h-refinement) More... | |
MooseMesh wraps a libMesh::Mesh object and enhances its capabilities by caching additional data and storing more state.
Definition at line 88 of file MooseMesh.h.
|
protected |
Definition at line 1497 of file MooseMesh.h.
|
protected |
Definition at line 1490 of file MooseMesh.h.
|
protected |
Definition at line 1498 of file MooseMesh.h.
|
protected |
Definition at line 1491 of file MooseMesh.h.
using MooseMesh::PeriodicNodeInfo = std::pair<const Node *, BoundaryID> |
Helper type for building periodic node maps.
Definition at line 1052 of file MooseMesh.h.
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protected |
Convenience enums.
Enumerator | |
---|---|
X | |
Y | |
Z |
Definition at line 1401 of file MooseMesh.h.
|
protected |
Enumerator | |
---|---|
MIN | |
MAX |
Definition at line 1407 of file MooseMesh.h.
|
strong |
Enumerator | |
---|---|
DEFAULT | |
REPLICATED | |
DISTRIBUTED |
Definition at line 104 of file MooseMesh.h.
MooseMesh::MooseMesh | ( | const InputParameters & | parameters | ) |
Definition at line 188 of file MooseMesh.C.
MooseMesh::MooseMesh | ( | const MooseMesh & | other_mesh | ) |
Definition at line 249 of file MooseMesh.C.
|
delete |
|
virtual |
Definition at line 325 of file MooseMesh.C.
MeshBase::element_iterator MooseMesh::activeLocalElementsBegin | ( | ) |
Calls active_local_nodes_begin/end() on the underlying libMesh mesh object.
Definition at line 2801 of file MooseMesh.C.
Referenced by FEProblemBase::checkDisplacementOrders(), and hasSecondOrderElements().
MeshBase::const_element_iterator MooseMesh::activeLocalElementsBegin | ( | ) | const |
Definition at line 2813 of file MooseMesh.C.
const MeshBase::element_iterator MooseMesh::activeLocalElementsEnd | ( | ) |
Definition at line 2807 of file MooseMesh.C.
Referenced by FEProblemBase::checkDisplacementOrders(), and hasSecondOrderElements().
const MeshBase::const_element_iterator MooseMesh::activeLocalElementsEnd | ( | ) | const |
Definition at line 2819 of file MooseMesh.C.
void MooseMesh::addGhostedBoundary | ( | BoundaryID | boundary_id | ) |
This will add the boundary ids to be ghosted to this processor.
Definition at line 2979 of file MooseMesh.C.
Referenced by FEProblemBase::addGhostedBoundary().
void MooseMesh::addPeriodicVariable | ( | unsigned int | var_num, |
BoundaryID | primary, | ||
BoundaryID | secondary | ||
) |
For "regular orthogonal" meshes, determine if variable var_num is periodic with respect to the primary and secondary BoundaryIDs, record this fact in the _periodic_dim data structure.
Definition at line 1973 of file MooseMesh.C.
Referenced by AddPeriodicBCAction::setPeriodicVars().
Node * MooseMesh::addQuadratureNode | ( | const Elem * | elem, |
const unsigned short int | side, | ||
const unsigned int | qp, | ||
BoundaryID | bid, | ||
const Point & | point | ||
) |
Adds a fictitious "QuadratureNode".
This doesn't actually add it to the libMesh mesh... we just keep track of these here in MooseMesh.
QuadratureNodes are fictitious "Nodes" that are located at quadrature points. This is useful for using the geometric search system to do searches based on quadrature point locations....
elem | The element |
side | The side number on which we want to add a quadrature node |
qp | The number of the quadrature point |
bid | The boundary ID for the point to be added with |
point | The physical location of the point |
Definition at line 1392 of file MooseMesh.C.
Referenced by GeometricSearchData::generateQuadratureNodes().
const Node * MooseMesh::addUniqueNode | ( | const Point & | p, |
Real | tol = 1e-6 |
||
) |
Add a new node to the mesh.
If there is already a node located at the point passed then the node will not be added. In either case a reference to the node at that location will be returned
Looping through the mesh nodes each time we add a point is very slow. To speed things up we keep a local data structure
Definition at line 1358 of file MooseMesh.C.
|
inline |
Accessor for all FaceInfo
objects.
Definition at line 2114 of file MooseMesh.h.
|
inline |
Set whether or not this mesh is allowed to read a recovery file.
Definition at line 1009 of file MooseMesh.h.
void MooseMesh::allowRemoteElementRemoval | ( | bool | allow_removal | ) |
Set whether to allow remote element removal.
Definition at line 3663 of file MooseMesh.C.
Referenced by MooseApp::attachRelationshipManagers().
|
inline |
Whether we are allow remote element removal.
Definition at line 1072 of file MooseMesh.h.
Referenced by MooseMesh().
|
inline |
Whether or not two extra element integers are identical.
Definition at line 2100 of file MooseMesh.h.
|
virtual |
Return iterators to the beginning/end of the boundary elements list.
Definition at line 1343 of file MooseMesh.C.
Referenced by getBoundaryElementRange(), and MeshInfo::possiblyAddSidesetInfo().
|
virtual |
Definition at line 1351 of file MooseMesh.C.
Referenced by getBoundaryElementRange(), and MeshInfo::possiblyAddSidesetInfo().
|
virtual |
Return iterators to the beginning/end of the boundary nodes list.
Definition at line 1327 of file MooseMesh.C.
Referenced by getBoundaryNodeRange().
|
virtual |
Definition at line 1335 of file MooseMesh.C.
Referenced by getBoundaryNodeRange().
std::vector< std::tuple< dof_id_type, unsigned short int, boundary_id_type > > MooseMesh::buildActiveSideList | ( | ) | const |
Calls BoundaryInfo::build_active_side_list.
Definition at line 2765 of file MooseMesh.C.
Referenced by buildFiniteVolumeInfo(), and PenetrationLocator::detectPenetration().
void MooseMesh::buildBndElemList | ( | ) |
Definition at line 957 of file MooseMesh.C.
Referenced by update().
|
private |
Build the coarsening map for a given element type.
This will tell you what quadrature points to copy from and to for stateful material properties on newly created elements from Adaptivity.
elem | The element that represents the element type you need the coarsening map for. |
qrule | The quadrature rule in use. |
qrule_face | The current face quadrature rule |
input_side | The side to map |
TODO: When running with parallel mesh + stateful adaptivty we will need to make sure that each processor has a complete map. This may require parallel communication. This is likely to happen when running on a mixed element mesh.
Definition at line 2298 of file MooseMesh.C.
Referenced by buildHRefinementAndCoarseningMaps().
|
private |
Build extra data for faster access to the information of extra element integers.
Definition at line 861 of file MooseMesh.C.
Referenced by update().
void MooseMesh::buildFiniteVolumeInfo | ( | ) | const |
Builds the face and elem info vectors that store meta-data needed for looping over and doing calculations based on mesh faces and elements in a finite volume setting.
This should only be called when finite volume variables are used in the problem or when the face and elem info objects are necessary for functor-based evaluations.
Definition at line 3485 of file MooseMesh.C.
Referenced by setupFiniteVolumeMeshData().
Definition at line 2054 of file MooseMesh.C.
Referenced by buildRefinementAndCoarseningMaps().
|
private |
Build lower-d mesh for all sides.
Definition at line 505 of file MooseMesh.C.
Referenced by init().
|
pure virtual |
Must be overridden by child classes.
This is where the Mesh object is actually created and filled in.
Implemented in PatternedMesh, ConcentricCircleMesh, StitchedMesh, MeshGeneratorMesh, AnnularMesh, GeneratedMesh, RinglebMesh, SpiralAnnularMesh, ImageMesh, FileMesh, and TiledMesh.
Referenced by init().
std::unique_ptr< MeshBase > MooseMesh::buildMeshBaseObject | ( | unsigned int | dim = libMesh::invalid_uint | ) |
Method to construct a libMesh::MeshBase object that is normally set and used by the MooseMesh object during the "init()" phase.
If the parameter dim
is not provided, then its value will be taken from the input file mesh block.
Definition at line 2603 of file MooseMesh.C.
Referenced by MeshGenerator::buildMeshBaseObject(), and init().
void MooseMesh::buildNodeList | ( | ) |
Calls BoundaryInfo::build_node_list()/build_side_list() and makes separate copies of Nodes/Elems in those lists.
Allocates memory which is cleaned up in the freeBndNodes()/freeBndElems() functions.
Definition at line 827 of file MooseMesh.C.
Referenced by update().
void MooseMesh::buildNodeListFromSideList | ( | ) |
Calls BoundaryInfo::build_node_list_from_side_list().
Definition at line 2733 of file MooseMesh.C.
Referenced by prepare(), and update().
void MooseMesh::buildPeriodicNodeMap | ( | std::multimap< dof_id_type, dof_id_type > & | periodic_node_map, |
unsigned int | var_number, | ||
PeriodicBoundaries * | pbs | ||
) | const |
This routine builds a multimap of boundary ids to matching boundary ids across all periodic boundaries in the system.
Definition at line 1587 of file MooseMesh.C.
void MooseMesh::buildPeriodicNodeSets | ( | std::map< BoundaryID, std::set< dof_id_type >> & | periodic_node_sets, |
unsigned int | var_number, | ||
PeriodicBoundaries * | pbs | ||
) | const |
This routine builds a datastructure of node ids organized by periodic boundary ids.
Definition at line 1672 of file MooseMesh.C.
Definition at line 2111 of file MooseMesh.C.
Referenced by buildRefinementAndCoarseningMaps(), and FEProblemBase::meshChangedHelper().
Create the refinement and coarsening maps necessary for projection of stateful material properties when using adaptivity.
assembly | Pointer to the Assembly object for this Mesh. |
Definition at line 2209 of file MooseMesh.C.
Referenced by FEProblemBase::initialSetup().
|
private |
Build the refinement map for a given element type.
This will tell you what quadrature points to copy from and to for stateful material properties on newly created elements from Adaptivity.
elem | The element that represents the element type you need the refinement map for. |
qrule | The quadrature rule in use. |
qrule_face | The current face quadrature rule |
parent_side | The side of the parent to map (-1 if not mapping parent sides) |
child | The child number (-1 if not mapping child internal sides) |
child_side | The side number of the child (-1 if not mapping sides) |
Definition at line 2219 of file MooseMesh.C.
Referenced by buildHRefinementAndCoarseningMaps().
void MooseMesh::buildSideList | ( | std::vector< dof_id_type > & | el, |
std::vector< unsigned short int > & | sl, | ||
std::vector< boundary_id_type > & | il | ||
) |
Calls BoundaryInfo::build_side_list().
Fills in the three passed vectors with list logical (element, side, id) tuples. This function will eventually be deprecated in favor of the one below, which returns a single std::vector of (elem-id, side-id, bc-id) tuples instead.
Definition at line 2740 of file MooseMesh.C.
Referenced by InterfaceQpUserObjectBase::initialSetup().
std::vector< std::tuple< dof_id_type, unsigned short int, boundary_id_type > > MooseMesh::buildSideList | ( | ) |
As above, but uses the non-deprecated std::tuple interface.
Definition at line 2759 of file MooseMesh.C.
std::unique_ptr< T > MooseMesh::buildTypedMesh | ( | unsigned int | dim = libMesh::invalid_uint | ) |
Shortcut method to construct a unique pointer to a libMesh mesh instance.
The created derived-from-MeshBase object will have its allow_remote_element_removal
flag set to whatever our value is. We will also attach any geometric RelationshipManagers
that have been requested by our simulation objects to the MeshBase
object. If the parameter dim
is not provided, then its value will be taken from the input file mesh block.
Definition at line 2031 of file MooseMesh.h.
Referenced by MeshGenerator::buildDistributedMesh(), and MeshGenerator::buildReplicatedMesh().
void MooseMesh::cacheChangedLists | ( | ) |
Cache information about what elements were refined and coarsened in the previous step.
Definition at line 715 of file MooseMesh.C.
Referenced by FEProblemBase::meshChangedHelper().
void MooseMesh::cacheFaceInfoVariableOwnership | ( | ) | const |
Cache if variables live on the elements connected by the FaceInfo objects.
The following paragraph of code assigns the VarFaceNeighbors
Definition at line 3689 of file MooseMesh.C.
Referenced by setupFiniteVolumeMeshData().
void MooseMesh::cacheFVElementalDoFs | ( | ) | const |
Cache the DoF indices for FV variables on each element.
These indices are used to speed up the setup loops of finite volume systems.
Definition at line 3755 of file MooseMesh.C.
Referenced by setupFiniteVolumeMeshData().
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protected |
Definition at line 1209 of file MooseMesh.C.
Referenced by update().
void MooseMesh::changeBoundaryId | ( | const boundary_id_type | old_id, |
const boundary_id_type | new_id, | ||
bool | delete_prev | ||
) |
Change all the boundary IDs for a given side from old_id to new_id.
If delete_prev is true, also actually remove the side with old_id from the BoundaryInfo object.
Definition at line 2509 of file MooseMesh.C.
|
static |
Change all the boundary IDs for a given side from old_id to new_id for the given mesh
.
If delete_prev is true, also actually remove the side with old_id from the BoundaryInfo object.
Definition at line 2518 of file MooseMesh.C.
void MooseMesh::checkCoordinateSystems | ( | ) |
Performs a sanity check for every element in the mesh.
If an element dimension is 3 and the corresponding coordinate system is RZ, then this will error. If an element dimension is greater than 1 and the corresponding system is RPSHERICAL then this will error
Definition at line 4023 of file MooseMesh.C.
Referenced by FEProblemBase::checkCoordinateSystems().
|
private |
Loop through all subdomain IDs and check if there is name duplication used for the subdomains with same ID.
Throw out an error if any name duplication is found.
Definition at line 4053 of file MooseMesh.C.
Referenced by prepare().
void MooseMesh::clearQuadratureNodes | ( | ) |
Clear out any existing quadrature nodes.
Most likely called before re-adding them.
Definition at line 1462 of file MooseMesh.C.
Referenced by DisplacedProblem::meshChanged(), GeometricSearchData::reinit(), and ~MooseMesh().
|
virtual |
Clone method.
Allocates memory you are responsible to clean up.
Definition at line 2569 of file MooseMesh.C.
Referenced by TiledMesh::buildMesh().
const std::vector< const Elem * > & MooseMesh::coarsenedElementChildren | ( | const Elem * | elem | ) | const |
Get the newly removed children element ids for an element that was just coarsened.
elem | Pointer to the parent element that was coarsened to. |
Definition at line 745 of file MooseMesh.C.
Referenced by FEProblemBase::meshChangedHelper(), ProjectMaterialProperties::onBoundary(), and ProjectMaterialProperties::onElement().
ConstElemPointerRange * MooseMesh::coarsenedElementRange | ( | ) | const |
Return a range that is suitable for threaded execution over elements that were just coarsened.
Note that these are the Parent elements that are now set to be INACTIVE. Their children are the elements that were just removed. Use coarsenedElementChildren() to get the element IDs for the children that were just removed for a particular parent element.
Definition at line 739 of file MooseMesh.C.
Referenced by FEProblemBase::meshChangedHelper().
void MooseMesh::computeFiniteVolumeCoords | ( | ) | const |
Compute the face coordinate value for all FaceInfo
and ElemInfo
objects.
'Coordinate' here means a coordinate value associated with the coordinate system. For Cartesian coordinate systems, 'coordinate' is simply '1'; in RZ, '2*pi*r', and in spherical, '4*pi*r^2'
Definition at line 3625 of file MooseMesh.C.
Referenced by setupFiniteVolumeMeshData().
|
inherited |
Connect controllable parameter of this action with the controllable parameters of the objects added by this action.
parameter | Name of the controllable parameter of this action |
object_type | Type of the object added by this action. |
object_name | Name of the object added by this action. |
object_parameter | Name of the parameter of the object. |
Definition at line 34 of file MooseBaseParameterInterface.C.
|
inline |
Definition at line 1830 of file MooseMesh.h.
Referenced by FEProblemBase::coordTransform().
|
protectedinherited |
Declares a piece of "managed" restartable data and initialize it.
Here, "managed" restartable data means that the caller can destruct this data upon destruction of the return value of this method. Therefore, this ManagedValue<T> wrapper should survive after the final calls to dataStore() for it. That is... at the very end.
This is needed for objects whose destruction ordering is important, and enables natural c++ destruction in reverse construction order of the object that declares it.
See delcareRestartableData and declareRestartableDataWithContext for more information.
Definition at line 276 of file Restartable.h.
|
protectedinherited |
Declare a piece of data as "recoverable" and initialize it.
This means that in the event of a restart this piece of data will be restored back to its previous value.
Note - this data will NOT be restored on Restart!
NOTE: This returns a reference! Make sure you store it in a reference!
data_name | The name of the data (usually just use the same name as the member variable) |
args | Arguments to forward to the constructor of the data |
Definition at line 351 of file Restartable.h.
|
protectedinherited |
Declare a piece of data as "restartable" and initialize it.
This means that in the event of a restart this piece of data will be restored back to its previous value.
NOTE: This returns a reference! Make sure you store it in a reference!
data_name | The name of the data (usually just use the same name as the member variable) |
args | Arguments to forward to the constructor of the data |
Definition at line 269 of file Restartable.h.
|
protectedinherited |
Declare a piece of data as "restartable" and initialize it.
This means that in the event of a restart this piece of data will be restored back to its previous value.
NOTE: This returns a reference! Make sure you store it in a reference!
data_name | The name of the data (usually just use the same name as the member variable) |
context | Context pointer that will be passed to the load and store functions |
args | Arguments to forward to the constructor of the data |
Definition at line 294 of file Restartable.h.
|
protectedinherited |
Declare a piece of data as "restartable".
This means that in the event of a restart this piece of data will be restored back to its previous value.
NOTE: This returns a reference! Make sure you store it in a reference!
data_name | The name of the data (usually just use the same name as the member variable) |
object_name | A supplied name for the object that is declaring this data. |
args | Arguments to forward to the constructor of the data |
Definition at line 323 of file Restartable.h.
|
protectedinherited |
Declare a piece of data as "restartable".
This means that in the event of a restart this piece of data will be restored back to its previous value.
NOTE: This returns a reference! Make sure you store it in a reference!
data_name | The name of the data (usually just use the same name as the member variable) |
object_name | A supplied name for the object that is declaring this data. |
context | Context pointer that will be passed to the load and store functions |
args | Arguments to forward to the constructor of the data |
Definition at line 333 of file Restartable.h.
void MooseMesh::deleteRemoteElements | ( | ) |
Delete remote elements.
Definition at line 3677 of file MooseMesh.C.
bool MooseMesh::detectOrthogonalDimRanges | ( | Real | tol = 1e-6 | ) |
This routine determines whether the Mesh is a regular orthogonal mesh (i.e.
square in 2D, cubic in 3D). If it is, then we can use a number of convenience functions when periodic boundary conditions are applied. This routine populates the _range vector which is necessary for these convenience functions.
Note: This routine can potentially identify meshes with concave faces that still "fit" in the convex hull of the corresponding regular orthogonal mesh. This case is highly unlikely in practice and if a user does this, well.... release the kicker!
Definition at line 1699 of file MooseMesh.C.
Referenced by AddPeriodicBCAction::autoTranslationBoundaries(), and prepare().
|
private |
This routine detects paired sidesets of a regular orthogonal mesh (.i.e.
parallel sidesets "across" from one and other). The _paired_boundary datastructure is populated with this information.
Definition at line 1773 of file MooseMesh.C.
Referenced by getPairedBoundaryMapping().
void MooseMesh::determineUseDistributedMesh | ( | ) |
Determine whether to use a distributed mesh.
Should be called during construction
Definition at line 2575 of file MooseMesh.C.
Referenced by MooseMesh(), and setParallelType().
|
virtual |
Returns MeshBase::mesh_dimension(), (not MeshBase::spatial_dimension()!) of the underlying libMesh mesh object.
Definition at line 2678 of file MooseMesh.C.
Referenced by addPeriodicVariable(), AddPeriodicBCAction::autoTranslationBoundaries(), NodalPatchRecoveryBase::evaluateBasisFunctions(), FunctionPeriodicBoundary::FunctionPeriodicBoundary(), getPairedBoundaryMapping(), PointVariableSamplerBase::initialize(), BlockRestrictable::initializeBlockRestrictable(), PropertyReadFile::initVoronoiCenterPoints(), isTranslatedPeriodic(), minPeriodicVector(), MooseVariableData< OutputType >::MooseVariableData(), PenetrationLocator::PenetrationLocator(), PiecewiseConstantFromCSV::PiecewiseConstantFromCSV(), SidesetInfoVectorPostprocessor::SidesetInfoVectorPostprocessor(), and Moose::PetscSupport::storePetscOptions().
Returns the width of the requested dimension.
Definition at line 1949 of file MooseMesh.C.
Referenced by addPeriodicVariable(), AddPeriodicBCAction::autoTranslationBoundaries(), and effectiveSpatialDimension().
|
inline |
Indicate whether the kind of adaptivity we're doing is p-refinement.
Definition at line 1325 of file MooseMesh.h.
Referenced by SubProblem::doingPRefinement(), ProjectMaterialProperties::onBoundary(), CacheChangedListsThread::onElement(), and ProjectMaterialProperties::onElement().
|
inline |
Query whether we have p-refinement.
Definition at line 1330 of file MooseMesh.h.
Referenced by buildRefinementAndCoarseningMaps().
|
virtual |
Returns the effective spatial dimension determined by the coordinates actually used by the mesh.
This means that a 1D mesh that has non-zero z or y coordinates is actually a 2D or 3D mesh, respectively. Likewise a 2D mesh that has non-zero z coordinates is actually 3D mesh.
Definition at line 2684 of file MooseMesh.C.
|
virtual |
Various accessors (pointers/references) for Elem "i".
If the requested elem is a remote element on a distributed mesh, only the query accessors are valid to call, and they return NULL.
Definition at line 2849 of file MooseMesh.C.
Referenced by addQuadratureNode(), buildCoarseningMap(), buildElemIDInfo(), buildFiniteVolumeInfo(), buildHRefinementAndCoarseningMaps(), buildLowerDMesh(), AnnularMesh::buildMesh(), RinglebMesh::buildMesh(), SpiralAnnularMesh::buildMesh(), ConcentricCircleMesh::buildMesh(), buildPRefinementAndCoarseningMaps(), buildRefinementMap(), cacheInfo(), changeBoundaryId(), checkCoordinateSystems(), coarsenedElementChildren(), detectPairedSidesets(), faceInfo(), findAdaptivityQpMaps(), getBlocksMaxDimension(), getBoundaryIDs(), getCoarseningMap(), getElemIDMapping(), getHigherDSide(), getLowerDElem(), getPCoarseningMap(), getPCoarseningMapHelper(), getPCoarseningSideMap(), getPRefinementMap(), getPRefinementMapHelper(), getPRefinementSideMap(), getQuadratureNode(), getRefinementMap(), ghostGhostedBoundaries(), nodeToActiveSemilocalElemMap(), nodeToElemMap(), prepare(), sideWithBoundaryID(), and updateActiveSemiLocalNodeRange().
|
virtual |
Definition at line 2856 of file MooseMesh.C.
const ElemInfo & MooseMesh::elemInfo | ( | const dof_id_type | id | ) | const |
Accessor for the elemInfo object for a given element ID.
Definition at line 3619 of file MooseMesh.C.
|
inline |
Accessor for the element info objects owned by this process.
Definition at line 1159 of file MooseMesh.h.
|
virtual |
Definition at line 2863 of file MooseMesh.C.
Referenced by FEProblemBase::addGhostedElem(), SystemBase::augmentSendList(), NodalPatchRecoveryAuxBase::blockRestrictElements(), NodalPatchRecovery::compute(), BoundaryMarker::computeElementMarker(), ProjectionAux::computeValue(), NodalPatchRecoveryAuxBase::computeValue(), elem(), ProjectionAux::elemOnNodeVariableIsDefinedOn(), ElementSubdomainModifier::execute(), ActivateElementsUserObjectBase::execute(), NonlinearSystemBase::findImplicitGeometricCouplingEntries(), NearestNodeLocator::findNodes(), NodeElemConstraint::getConnectedDofIndices(), NodeFaceConstraint::getConnectedDofIndices(), FEProblemBase::getDiracElements(), PenetrationThread::getInfoForFacesWithCommonNodes(), ActivateElementsUserObjectBase::getNewlyActivatedElementRange(), ActivateElementsUserObjectBase::getNewlyActivatedNodeRange(), DiracKernelBase::hasPointsOnElem(), ActivateElementsUserObjectBase::isNewlyActivated(), Moose::Mortar::loopOverMortarSegments(), SecondaryNeighborhoodThread::operator()(), PenetrationThread::operator()(), FEProblemBase::prepare(), FEProblemBase::prepareFace(), FEProblemBase::reinitDirac(), FEProblemBase::reinitElem(), FEProblemBase::reinitElemFace(), FEProblemBase::reinitElemFaceRef(), FEProblemBase::reinitElemNeighborAndLowerD(), FEProblemBase::reinitLowerDElem(), FEProblemBase::reinitNeighbor(), FEProblemBase::reinitNeighborFaceRef(), NonlinearSystemBase::reinitNodeFace(), ElementSubdomainModifier::setAncestorsSubdomainIDs(), FEProblemBase::setCurrentLowerDElem(), EqualValueEmbeddedConstraint::shouldApply(), and NearestNodeLocator::updatePatch().
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virtual |
Definition at line 2869 of file MooseMesh.C.
|
static |
returns MooseMesh element type options
Definition at line 3654 of file MooseMesh.C.
|
inlinevirtualinherited |
Return the enabled status of the object.
Reimplemented in EigenKernel.
Definition at line 49 of file MooseObject.h.
Referenced by EigenKernel::enabled().
void MooseMesh::errorIfDistributedMesh | ( | std::string | name | ) | const |
Generate a unified error message if the underlying libMesh mesh is a DistributedMesh.
Clients of MooseMesh can use this function to throw an error if they know they don't work with DistributedMesh.
See, for example, the NodalVariableValue class.
Definition at line 3367 of file MooseMesh.C.
Referenced by BoundaryPreservedMarker::BoundaryPreservedMarker(), ElementGroupCentroidPositions::ElementGroupCentroidPositions(), ElementsAlongLine::ElementsAlongLine(), ElementsAlongPlane::ElementsAlongPlane(), FunctorPositions::initialize(), FunctorTimes::initialize(), IntersectionPointsAlongLine::IntersectionPointsAlongLine(), LineMaterialSamplerBase< Real >::LineMaterialSamplerBase(), MultiAppGeometricInterpolationTransfer::MultiAppGeometricInterpolationTransfer(), MultiAppUserObjectTransfer::MultiAppUserObjectTransfer(), NodeElemConstraint::NodeElemConstraint(), NonlocalIntegratedBC::NonlocalIntegratedBC(), NonlocalKernel::NonlocalKernel(), PatternedMesh::PatternedMesh(), StitchedMesh::StitchedMesh(), and TiledMesh::TiledMesh().
|
inherited |
A descriptive prefix for errors for this object:
The following <error_type> occurred in the object "<name>", of type "<type>".
Definition at line 15 of file MooseBaseErrorInterface.C.
Referenced by MooseBaseErrorInterface::mooseError(), and MooseBaseErrorInterface::mooseWarning().
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inline |
Accessor for local FaceInfo
objects.
Definition at line 2108 of file MooseMesh.h.
Referenced by LayeredSideDiffusiveFluxAverage::computeQpIntegral(), SideIntegralVariableUserObject::computeQpIntegral(), InterfaceUserObject::execute(), FunctorSmootherTempl< T >::FunctorSmootherTempl(), SideUserObject::getFaceInfos(), and InternalSideUserObject::getFaceInfos().
Accessor for the local FaceInfo object on the side of one element. Returns null if ghosted.
Definition at line 3603 of file MooseMesh.C.
|
private |
Given an elem type, get maps that tell us what qp's are closest to each other between a parent and it's children.
This is mainly used for mapping stateful material properties during adaptivity.
There are 3 cases here:
Case 3 only happens under refinement (need to invent data at internal child sides).
template_elem | An element of the type that we need to find the maps for |
qrule | The quadrature rule that we need to find the maps for |
qrule_face | The face quadrature rule that we need to find the maps for |
refinement_map | The map to use when an element gets split |
coarsen_map | The map to use when an element is coarsened. |
parent_side | - the id of the parent's side |
child | - the id of the child element |
child_side | - The id of the child's side |
Definition at line 2368 of file MooseMesh.C.
Referenced by buildCoarseningMap(), and buildRefinementMap().
|
protected |
Definition at line 351 of file MooseMesh.C.
Referenced by buildBndElemList(), and ~MooseMesh().
|
protected |
Definition at line 333 of file MooseMesh.C.
Referenced by buildNodeList(), and ~MooseMesh().
ConstElemRange * MooseMesh::getActiveLocalElementRange | ( | ) |
Return pointers to range objects for various types of ranges (local nodes, boundary elems, etc.).
Definition at line 1040 of file MooseMesh.C.
Referenced by NonlinearSystemBase::computeDamping(), AuxiliarySystem::computeElementalVarsHelper(), FEProblemBase::computeIndicators(), NonlinearSystemBase::computeJacobianBlocks(), NonlinearSystemBase::computeJacobianInternal(), FEProblemBase::computeMarkers(), NonlinearSystemBase::computeResidualAndJacobianInternal(), NonlinearSystemBase::computeResidualInternal(), FEProblemBase::computeUserObjectsInternal(), PointwiseRenormalizeVector::execute(), FEProblemBase::initialSetup(), meshChanged(), DOFMapOutput::output(), MeshInfo::possiblyAddSubdomainInfo(), FEProblemBase::projectSolution(), SystemBase::setVariableGlobalDoFs(), FixedPointSolve::solve(), TransientMultiApp::solveStep(), updateActiveSemiLocalNodeRange(), Adaptivity::updateErrorVectors(), FEProblemBase::updateMaxQps(), and SystemBase::zeroVariables().
NodeRange * MooseMesh::getActiveNodeRange | ( | ) |
Definition at line 1054 of file MooseMesh.C.
Referenced by VariableCondensationPreconditioner::getDofToCondense(), and meshChanged().
SemiLocalNodeRange * MooseMesh::getActiveSemiLocalNodeRange | ( | ) | const |
Definition at line 1068 of file MooseMesh.C.
std::set< dof_id_type > MooseMesh::getAllElemIDs | ( | unsigned int | elem_id_index | ) | const |
Return all the unique element IDs for an extra element integer with its index.
Definition at line 931 of file MooseMesh.C.
Referenced by getElemIDMapping().
unsigned int MooseMesh::getAxisymmetricRadialCoord | ( | ) | const |
Returns the desired radial direction for RZ coordinate transformation.
Definition at line 4010 of file MooseMesh.C.
Referenced by SubProblem::getAxisymmetricRadialCoord().
const std::set< SubdomainID > & MooseMesh::getBlockConnectedBlocks | ( | const SubdomainID | subdomain_id | ) | const |
Get the list of subdomains neighboring a given subdomain.
subdomain_id | The boundary ID you want to get the subdomain IDs for. |
Definition at line 3304 of file MooseMesh.C.
unsigned int MooseMesh::getBlocksMaxDimension | ( | const std::vector< SubdomainName > & | blocks | ) | const |
Returns the maximum element dimension on the given blocks.
Definition at line 2699 of file MooseMesh.C.
Referenced by BlockRestrictable::initializeBlockRestrictable().
const std::unordered_map< boundary_id_type, std::unordered_set< dof_id_type > > & MooseMesh::getBoundariesToActiveSemiLocalElemIds | ( | ) | const |
Returns a map of boundaries to ids of elements on the boundary.
Definition at line 1127 of file MooseMesh.C.
Referenced by getBoundariesToElems().
const std::unordered_map< boundary_id_type, std::unordered_set< dof_id_type > > & MooseMesh::getBoundariesToElems | ( | ) | const |
Returns a map of boundaries to ids of elements on the boundary.
Definition at line 1119 of file MooseMesh.C.
std::unordered_set< dof_id_type > MooseMesh::getBoundaryActiveNeighborElemIds | ( | BoundaryID | bid | ) | const |
Return all ids of neighbors of elements which have a side which is part of a sideset.
Note that boundaries are sided, this is on the neighbor side. For the sideset side, use getBoundariesActiveLocalElemIds. Note that while the element is local and active, the neighbor is not guaranteed to be local, it could be ghosted. Note that if the neighbor is not ghosted, is a remote_elem, then it will not be included
bid | the id of the sideset of interest |
Definition at line 1144 of file MooseMesh.C.
std::unordered_set< dof_id_type > MooseMesh::getBoundaryActiveSemiLocalElemIds | ( | BoundaryID | bid | ) | const |
Return all ids of elements which have a side which is part of a sideset.
Note that boundaries are sided.
bid | the id of the sideset of interest |
Definition at line 1133 of file MooseMesh.C.
std::set< SubdomainID > MooseMesh::getBoundaryConnectedBlocks | ( | const BoundaryID | bid | ) | const |
Get the list of subdomains associated with the given boundary.
bid | The boundary ID you want to get the subdomain IDs for. |
Definition at line 3271 of file MooseMesh.C.
Referenced by DomainUserObject::DomainUserObject(), getInterfaceConnectedBlocks(), and NodeFaceConstraint::getSecondaryConnectedBlocks().
std::set< SubdomainID > MooseMesh::getBoundaryConnectedSecondaryBlocks | ( | const BoundaryID | bid | ) | const |
Get the list of subdomains associated with the given boundary of its secondary side.
bid | The boundary ID you want to get the subdomain IDs for. |
Definition at line 3282 of file MooseMesh.C.
Referenced by DomainUserObject::DomainUserObject().
ConstBndElemRange * MooseMesh::getBoundaryElementRange | ( | ) |
Definition at line 1105 of file MooseMesh.C.
Referenced by AuxiliarySystem::computeElementalVarsHelper(), DMMooseGetEmbedding_Private(), GeometricSearchData::generateQuadratureNodes(), FEProblemBase::initialSetup(), meshChanged(), and GeometricSearchData::updateQuadratureNodes().
BoundaryID MooseMesh::getBoundaryID | ( | const BoundaryName & | boundary_name | ) | const |
Get the associated BoundaryID for the boundary name.
Definition at line 1474 of file MooseMesh.C.
Referenced by AddPeriodicBCAction::act(), TiledMesh::buildMesh(), StitchedMesh::buildMesh(), PatternedMesh::buildMesh(), DMSetUp_Moose_Pre(), GeometricSearchData::getNearestNodeLocator(), GeometricSearchData::getPenetrationLocator(), GeometricSearchData::getQuadratureNearestNodeLocator(), GeometricSearchData::getQuadraturePenetrationLocator(), LinearNodalConstraint::LinearNodalConstraint(), LowerBoundNodalKernel::LowerBoundNodalKernel(), NodalScalarKernel::NodalScalarKernel(), EqualValueBoundaryConstraint::updateConstrainedNodes(), and UpperBoundNodalKernel::UpperBoundNodalKernel().
std::vector< BoundaryID > MooseMesh::getBoundaryIDs | ( | const Elem *const | elem, |
const unsigned short int | side | ||
) | const |
Returns a vector of boundary IDs for the requested element on the requested side.
Definition at line 2719 of file MooseMesh.C.
Referenced by NonlinearSystemBase::computeJacobianInternal(), DGKernelBase::DGKernelBase(), DGKernelBase::excludeBoundary(), MultiAppUserObjectTransfer::execute(), BoundaryRestrictable::hasBoundary(), BoundaryRestrictable::initializeBoundaryRestrictable(), BoundaryRestrictable::meshBoundaryIDs(), and ActivateElementsUserObjectBase::setNewBoundayName().
const std::set< BoundaryID > & MooseMesh::getBoundaryIDs | ( | ) | const |
Returns a const reference to a set of all user-specified boundary IDs.
On a distributed mesh this will only include boundary IDs which exist on local or ghosted elements; a copy and a call to _communicator.set_union() will be necessary to get the global ID set.
Definition at line 2727 of file MooseMesh.C.
Referenced by cacheInfo().
std::vector< BoundaryID > MooseMesh::getBoundaryIDs | ( | const std::vector< BoundaryName > & | boundary_name, |
bool | generate_unknown = false |
||
) | const |
Get the associated BoundaryID for the boundary names that are passed in.
Definition at line 1505 of file MooseMesh.C.
const std::string & MooseMesh::getBoundaryName | ( | BoundaryID | boundary_id | ) |
Return the name of the boundary given the id.
Definition at line 1566 of file MooseMesh.C.
Referenced by FEProblemBase::initialSetup(), and NonlinearThread::printBoundaryExecutionInformation().
ConstBndNodeRange * MooseMesh::getBoundaryNodeRange | ( | ) |
Definition at line 1091 of file MooseMesh.C.
Referenced by ElementSubdomainModifier::buildMovedBndNodesRange(), NonlinearSystemBase::computeJacobianBlocks(), NonlinearSystemBase::computeJacobianInternal(), AuxiliarySystem::computeMortarNodalVars(), NonlinearSystemBase::computeNodalBCs(), NonlinearSystemBase::computeNodalBCsResidualAndJacobian(), AuxiliarySystem::computeNodalVarsHelper(), NonlinearSystemBase::computeResidualInternal(), DMMooseGetEmbedding_Private(), NearestNodeLocator::findNodes(), ActivateElementsUserObjectBase::getNewlyActivatedBndNodeRange(), FEProblemBase::initialSetup(), meshChanged(), FEProblemBase::projectSolution(), NonlinearSystemBase::setInitialSolution(), and NearestNodeLocator::updatePatch().
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inherited |
Verifies that the requested parameter exists and is not NULL and returns it to the caller.
The template parameter must be a pointer or an error will be thrown.
Definition at line 274 of file MooseBaseParameterInterface.h.
const std::vector< std::pair< unsigned int, QpMap > > & MooseMesh::getCoarseningMap | ( | const Elem & | elem, |
int | input_side | ||
) |
Get the coarsening map for a given element type.
This will tell you what quadrature points to copy from and to for stateful material properties on newly created elements from Adaptivity.
elem | The element that represents the element type you need the coarsening map for. |
input_side | The side to map |
Definition at line 2326 of file MooseMesh.C.
Referenced by ProjectMaterialProperties::onBoundary(), and ProjectMaterialProperties::onElement().
Moose::CoordinateSystemType MooseMesh::getCoordSystem | ( | SubdomainID | sid | ) | const |
Get the coordinate system type, e.g.
xyz, rz, or r-spherical, for the provided subdomain id sid
Definition at line 3891 of file MooseMesh.C.
Referenced by SubProblem::getCoordSystem().
const std::map< SubdomainID, Moose::CoordinateSystemType > & MooseMesh::getCoordSystem | ( | ) | const |
Get the map from subdomain ID to coordinate system type, e.g.
xyz, rz, or r-spherical
Definition at line 3923 of file MooseMesh.C.
Referenced by setGeneralAxisymmetricCoordAxes().
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inherited |
Returns the path of a data file for a given FileName type parameter, searching (in the following order)
Definition at line 22 of file DataFileInterface.C.
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inherited |
Returns the path of a data file for a given relative file path.
This can be used for hardcoded datafile names and will search the same locations as getDataFileName. The optional param pointer can be used to turn the mooseErrors this function emits into paramErrors
Definition at line 40 of file DataFileInterface.C.
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inline |
Return the accessing integer for an extra element integer with its name.
Definition at line 2092 of file MooseMesh.h.
Referenced by areElemIDsIdentical().
std::unordered_map< dof_id_type, std::set< dof_id_type > > MooseMesh::getElemIDMapping | ( | const std::string & | from_id_name, |
const std::string & | to_id_name | ||
) | const |
Definition at line 902 of file MooseMesh.C.
std::set< dof_id_type > MooseMesh::getElemIDsOnBlocks | ( | unsigned int | elem_id_index, |
const std::set< SubdomainID > & | blks | ||
) | const |
Return all the unique element IDs for an extra element integer with its index on a set of subdomains.
Definition at line 941 of file MooseMesh.C.
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inlinevirtual |
Returns the name of the mesh file read to produce this mesh if any or an empty string otherwise.
Reimplemented in FileMesh, and TiledMesh.
Definition at line 1049 of file MooseMesh.h.
const std::pair< Point, RealVectorValue > & MooseMesh::getGeneralAxisymmetricCoordAxis | ( | SubdomainID | subdomain_id | ) | const |
Gets the general axisymmetric coordinate axis for a block.
[in] | subdomain_id | Subdomain ID for which to get axisymmetric coordinate axis |
Definition at line 3985 of file MooseMesh.C.
const std::set< unsigned int > & MooseMesh::getGhostedBoundaries | ( | ) | const |
Return a writable reference to the set of ghosted boundary IDs.
Definition at line 2991 of file MooseMesh.C.
const std::vector< Real > & MooseMesh::getGhostedBoundaryInflation | ( | ) | const |
Return a writable reference to the _ghosted_boundaries_inflation vector.
Definition at line 2997 of file MooseMesh.C.
Referenced by NearestNodeLocator::findNodes(), and NearestNodeLocator::updatePatch().
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inline |
Getter for the ghosting_patch_size parameter.
Definition at line 611 of file MooseMesh.h.
Referenced by NearestNodeLocator::findNodes(), and NearestNodeLocator::updatePatch().
unsigned int MooseMesh::getHigherDSide | ( | const Elem * | elem | ) | const |
Returns the local side ID of the interior parent aligned with the lower dimensional element.
Definition at line 1494 of file MooseMesh.C.
BoundingBox MooseMesh::getInflatedProcessorBoundingBox | ( | Real | inflation_multiplier = 0.01 | ) | const |
Get a (slightly inflated) processor bounding box.
inflation_multiplier | This amount will be multiplied by the length of the diagonal of the bounding box to find the amount to inflate the bounding box by in all directions. |
Definition at line 3169 of file MooseMesh.C.
Referenced by PositionsFunctorValueSampler::execute(), PointVariableSamplerBase::execute(), CartesianGridDivision::initialize(), and RadialAverage::updateCommunicationLists().
std::set< SubdomainID > MooseMesh::getInterfaceConnectedBlocks | ( | const BoundaryID | bid | ) | const |
Get the list of subdomains contacting the given boundary.
bid | The boundary ID you want to get the subdomain IDs for. |
Definition at line 3293 of file MooseMesh.C.
ConstNodeRange * MooseMesh::getLocalNodeRange | ( | ) |
Definition at line 1077 of file MooseMesh.C.
Referenced by NonlinearSystemBase::computeDamping(), NonlinearSystemBase::computeJacobianInternal(), AuxiliarySystem::computeNodalVarsHelper(), NonlinearSystemBase::computeResidualInternal(), FEProblemBase::computeUserObjectsInternal(), FEProblemBase::initialSetup(), and meshChanged().
const Elem * MooseMesh::getLowerDElem | ( | const Elem * | elem, |
unsigned short int | side | ||
) | const |
Returns a const pointer to a lower dimensional element that corresponds to a side of a higher dimensional element.
This relationship is established through an internal_parent; if there is no lowerDElem, nullptr is returned.
Definition at line 1483 of file MooseMesh.C.
Referenced by GhostLowerDElems::operator()(), DisplacedProblem::reinitElemNeighborAndLowerD(), and FEProblemBase::reinitElemNeighborAndLowerD().
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inline |
This function attempts to return the map from a high-order element side to its corresponding lower-d element.
Definition at line 2126 of file MooseMesh.h.
Reimplemented in AnnularMesh, and GeneratedMesh.
Definition at line 1964 of file MooseMesh.C.
Referenced by dimensionWidth(), GeneratedMesh::getMaxInDimension(), AnnularMesh::getMaxInDimension(), and PropertyReadFile::PropertyReadFile().
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inline |
Getter for the maximum leaf size parameter.
Definition at line 616 of file MooseMesh.h.
Referenced by NearestNodeLocator::findNodes(), and NearestNodeLocator::updatePatch().
MeshBase & MooseMesh::getMesh | ( | ) |
Accessor for the underlying libMesh Mesh object.
Definition at line 3198 of file MooseMesh.C.
Referenced by AddPeriodicBCAction::act(), activeLocalElementsBegin(), activeLocalElementsEnd(), Adaptivity::adaptMesh(), FEProblemBase::addAnyRedistributers(), addQuadratureNode(), addUniqueNode(), MultiAppConservativeTransfer::adjustTransferredSolution(), MultiAppConservativeTransfer::adjustTransferredSolutionNearestPoint(), NonlinearSystemBase::assembleScalingVector(), Assembly::Assembly(), AuxKernelTempl< Real >::AuxKernelTempl(), buildActiveSideList(), buildBndElemList(), buildElemIDInfo(), buildFiniteVolumeInfo(), buildHRefinementAndCoarseningMaps(), buildLowerDMesh(), TiledMesh::buildMesh(), FileMesh::buildMesh(), AnnularMesh::buildMesh(), RinglebMesh::buildMesh(), SpiralAnnularMesh::buildMesh(), GeneratedMesh::buildMesh(), ConcentricCircleMesh::buildMesh(), StitchedMesh::buildMesh(), PatternedMesh::buildMesh(), ImageMesh::buildMesh2D(), ImageMesh::buildMesh3D(), buildNodeList(), buildNodeListFromSideList(), buildPeriodicNodeMap(), buildPeriodicNodeSets(), buildPRefinementAndCoarseningMaps(), buildSideList(), cacheChangedLists(), MultiAppVariableValueSamplePostprocessorTransfer::cacheElemToPostprocessorData(), cacheInfo(), changeBoundaryId(), checkCoordinateSystems(), NonlinearSystemBase::constraintJacobians(), NonlinearSystemBase::constraintResiduals(), MortarData::createMortarInterface(), detectOrthogonalDimRanges(), detectPairedSidesets(), dimension(), ExtraElementIntegerDivision::divisionIndex(), FunctorBinnedValuesDivision::divisionIndex(), SubdomainsDivision::divisionIndex(), DumpObjectsProblem::dumpVariableHelper(), ElementalVariableValue::ElementalVariableValue(), ElementGroupCentroidPositions::ElementGroupCentroidPositions(), elemPtr(), ElemSideNeighborLayersTester::execute(), NodalNormalsCorner::execute(), MultiAppVariableValueSamplePostprocessorTransfer::execute(), MultiAppUserObjectTransfer::execute(), NodalNormalsPreprocessor::execute(), ExtraElementIntegerDivision::ExtraElementIntegerDivision(), ExtraIDIntegralVectorPostprocessor::ExtraIDIntegralVectorPostprocessor(), QuadraturePointMultiApp::fillPositions(), CentroidMultiApp::fillPositions(), MultiAppGeometricInterpolationTransfer::fillSourceInterpolationPoints(), ElementSubdomainModifier::finalize(), ActivateElementsUserObjectBase::finalize(), getActiveLocalElementRange(), getActiveNodeRange(), getBlocksMaxDimension(), getBoundaryID(), getBoundaryIDs(), getBoundaryName(), getElementIDIndex(), getElemIDMapping(), FEProblemBase::getEvaluableElementRange(), getInflatedProcessorBoundingBox(), getLocalNodeRange(), SubProblem::getMaterialPropertyBlockNames(), SubProblem::getMaterialPropertyBoundaryNames(), getNodeList(), FEProblemBase::getNonlinearEvaluableElementRange(), getPointLocator(), getSubdomainID(), getSubdomainIDs(), getSubdomainName(), ghostGhostedBoundaries(), hasElementID(), UpdateDisplacedMeshThread::init(), init(), VerifyElementUniqueID::initialize(), VerifyNodalUniqueID::initialize(), ExtraElementIntegerDivision::initialize(), ElementCentroidPositions::initialize(), ElementGroupCentroidPositions::initialize(), FunctorPositions::initialize(), FunctorTimes::initialize(), MultiAppDofCopyTransfer::initialSetup(), NodalVariableValue::initialSetup(), Exodus::initialSetup(), FEProblemBase::initialSetup(), OversampleOutput::initOversample(), MultiAppGeometricInterpolationTransfer::interpolateTargetPoints(), LinearNodalConstraint::LinearNodalConstraint(), localNodesBegin(), localNodesEnd(), Moose::Mortar::loopOverMortarSegments(), MaterialVectorPostprocessor::MaterialVectorPostprocessor(), maxElemId(), maxNodeId(), GeometryBase::meshChanged(), GhostingUserObject::meshChanged(), RadialAverage::meshChanged(), Nemesis::meshChanged(), MooseMesh(), nElem(), nNodes(), NodalPatchRecovery::NodalPatchRecovery(), NodalVariableValue::NodalVariableValue(), nodeToActiveSemilocalElemMap(), nodeToElemMap(), ComputeNodalUserObjectsThread::onNode(), ProxyRelationshipManager::operator()(), MortarUserObjectThread::operator()(), ComputeMortarFunctor::operator()(), XDA::output(), ConsoleUtils::outputMeshInformation(), prepare(), EqualValueEmbeddedConstraint::prepareSecondaryToPrimaryMap(), BoundaryPreservedMarker::preserveBoundary(), printInfo(), ElementSubdomainModifier::pushBoundaryNodeInfo(), ElementSubdomainModifier::pushBoundarySideInfo(), queryElemPtr(), queryNodePtr(), FileMesh::read(), PropertyReadFile::readData(), RedistributeProperties::redistribute(), SubProblem::restrictionBoundaryCheckName(), SubProblem::restrictionSubdomainCheckName(), setBoundaryName(), NonlinearSystemBase::setConstraintSecondaryValues(), XFEMInterface::setDisplacedMesh(), ActivateElementsUserObjectBase::setNewBoundayName(), setPartitionerHelper(), setSubdomainName(), sideWithBoundaryID(), MultiAppDofCopyTransfer::transfer(), DisplacedProblem::undisplaceMesh(), updateActiveSemiLocalNodeRange(), EqualValueBoundaryConstraint::updateConstrainedNodes(), Adaptivity::updateErrorVectors(), RandomData::updateGenerators(), DisplacedProblem::updateMesh(), and VariableCondensationPreconditioner::VariableCondensationPreconditioner().
MeshBase& MooseMesh::getMesh | ( | const std::string & | name | ) |
const MeshBase & MooseMesh::getMesh | ( | ) | const |
Definition at line 3205 of file MooseMesh.C.
const MeshBase& MooseMesh::getMesh | ( | const std::string & | name | ) | const |
const MeshBase * MooseMesh::getMeshPtr | ( | ) | const |
Definition at line 3192 of file MooseMesh.C.
Referenced by MooseApp::attachRelationshipManagers(), buildTypedMesh(), and RelationshipManager::init().
Returns the min or max of the requested dimension respectively.
Reimplemented in AnnularMesh, and GeneratedMesh.
Definition at line 1955 of file MooseMesh.C.
Referenced by dimensionWidth(), GeneratedMesh::getMinInDimension(), AnnularMesh::getMinInDimension(), and PropertyReadFile::PropertyReadFile().
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inlineinherited |
Get the MooseApp this class is associated with.
Definition at line 44 of file MooseBase.h.
Referenced by ReporterTransferInterface::checkHasReporterValue(), Coupleable::checkWritableVar(), MooseBaseParameterInterface::connectControllableParams(), Coupleable::Coupleable(), MortarData::createMortarInterface(), EigenProblem::doFreeNonlinearPowerIterations(), Terminator::execute(), FEProblemSolve::FEProblemSolve(), SolutionInvalidInterface::flagInvalidSolutionInternal(), MaterialPropertyInterface::MaterialPropertyInterface(), MooseVariableDataFV< OutputType >::MooseVariableDataFV(), ProgressOutput::output(), MooseBaseParameterInterface::paramError(), PetscOutputInterface::petscLinearOutput(), PetscOutputInterface::petscNonlinearOutput(), PetscOutputInterface::PetscOutputInterface(), PostprocessorInterface::postprocessorsAdded(), MultiApp::preTransfer(), Reporter::Reporter(), ReporterInterface::reportersAdded(), and VectorPostprocessorInterface::vectorPostprocessorsAdded().
const std::set< SubdomainID > & MooseMesh::getNodeBlockIds | ( | const Node & | node | ) | const |
Return list of blocks to which the given node belongs.
Definition at line 1280 of file MooseMesh.C.
Referenced by GeometryBase::meshChanged(), ComputeNodalUserObjectsThread::onNode(), ComputeNodalKernelsThread::onNode(), ComputeNodalKernelJacobiansThread::onNode(), and ComputeInitialConditionThread::operator()().
const std::vector< dof_id_type > & MooseMesh::getNodeList | ( | boundary_id_type | nodeset_id | ) | const |
Return a writable reference to a vector of node IDs that belong to nodeset_id.
Definition at line 3220 of file MooseMesh.C.
Referenced by LinearNodalConstraint::LinearNodalConstraint(), GeometryBase::meshChanged(), NodalScalarKernel::NodalScalarKernel(), and EqualValueBoundaryConstraint::updateConstrainedNodes().
const RealVectorValue & MooseMesh::getNormalByBoundaryID | ( | BoundaryID | id | ) | const |
Returns the normal vector associated with a given BoundaryID.
It's only valid to call this when AddAllSideSetsByNormals is active.
Definition at line 2559 of file MooseMesh.C.
const std::pair< BoundaryID, BoundaryID > * MooseMesh::getPairedBoundaryMapping | ( | unsigned int | component | ) |
This function attempts to return the paired boundary ids for the given component.
For example, in a generated 2D mesh, passing 0 for the "x" component will return (3, 1).
component | - An integer representing the desired component (dimension) |
Definition at line 2036 of file MooseMesh.C.
Referenced by addPeriodicVariable(), and AddPeriodicBCAction::autoTranslationBoundaries().
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inherited |
Retrieve a parameter for the object.
name | The name of the parameter |
Definition at line 210 of file MooseBaseParameterInterface.h.
Referenced by CreateDisplacedProblemAction::act(), AddPeriodicBCAction::act(), ADNodalKernel::ADNodalKernel(), ArrayParsedAux::ArrayParsedAux(), AddPeriodicBCAction::autoTranslationBoundaries(), BicubicSplineFunction::BicubicSplineFunction(), PiecewiseTabularBase::buildFromJSON(), PhysicsBase::checkVectorParamsNoOverlap(), PhysicsBase::checkVectorParamsSameLength(), FEProblemBase::createTagSolutions(), AccumulateReporter::declareLateValues(), DerivativeParsedMaterialTempl< is_ad >::DerivativeParsedMaterialTempl(), DynamicObjectRegistrationAction::DynamicObjectRegistrationAction(), EigenKernel::EigenKernel(), FEProblemBase::FEProblemBase(), FEProblemSolve::FEProblemSolve(), FiniteDifferencePreconditioner::FiniteDifferencePreconditioner(), FVInterfaceKernel::FVInterfaceKernel(), ExtraNodesetGenerator::generate(), FileMeshGenerator::generate(), BreakMeshByBlockGenerator::generate(), CoarsenBlockGenerator::generate(), GeneratedMeshGenerator::generate(), RefineBlockGenerator::generate(), RefineSidesetGenerator::generate(), SideSetsBetweenSubdomainsGenerator::generate(), BlockDeletionGenerator::generate(), MeshExtruderGenerator::generate(), ParsedGenerateSideset::generate(), GenericConstantRankTwoTensorTempl< is_ad >::GenericConstantRankTwoTensorTempl(), MooseApp::getCheckpointDirectories(), ExecutorInterface::getExecutor(), GhostingUserObject::GhostingUserObject(), TimeSequenceStepper::init(), IterationAdaptiveDT::init(), AdvancedOutput::init(), AttribThread::initFrom(), AttribSysNum::initFrom(), AttribResidualObject::initFrom(), AttribDisplaced::initFrom(), BlockRestrictable::initializeBlockRestrictable(), BoundaryRestrictable::initializeBoundaryRestrictable(), Console::initialSetup(), IterationAdaptiveDT::limitDTToPostprocessorValue(), MooseMesh(), MooseVariableBase::MooseVariableBase(), NestedDivision::NestedDivision(), ConsoleUtils::outputExecutionInformation(), ParsedAux::ParsedAux(), ParsedCurveGenerator::ParsedCurveGenerator(), ParsedElementDeletionGenerator::ParsedElementDeletionGenerator(), ParsedGenerateSideset::ParsedGenerateSideset(), ParsedMaterialTempl< is_ad >::ParsedMaterialTempl(), ParsedNodeTransformGenerator::ParsedNodeTransformGenerator(), ParsedODEKernel::ParsedODEKernel(), ParsedPostprocessor::ParsedPostprocessor(), ParsedSubdomainMeshGenerator::ParsedSubdomainMeshGenerator(), PiecewiseByBlockFunctorMaterialTempl< T >::PiecewiseByBlockFunctorMaterialTempl(), PiecewiseConstantByBlockMaterialTempl< is_ad >::PiecewiseConstantByBlockMaterialTempl(), RenameBlockGenerator::RenameBlockGenerator(), RenameBoundaryGenerator::RenameBoundaryGenerator(), Moose::FV::setInterpolationMethod(), SetupMeshAction::setupMesh(), SingleMatrixPreconditioner::SingleMatrixPreconditioner(), TimePeriod::TimePeriod(), UniqueExtraIDMeshGenerator::UniqueExtraIDMeshGenerator(), VariableCondensationPreconditioner::VariableCondensationPreconditioner(), and VectorOfPostprocessors::VectorOfPostprocessors().
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inherited |
Retrieve two parameters and provide pair of parameters for the object.
param1 | The name of first parameter |
param2 | The name of second parameter |
Definition at line 267 of file MooseBaseParameterInterface.h.
unsigned int MooseMesh::getPatchSize | ( | ) | const |
Getter for the patch_size parameter.
Definition at line 3151 of file MooseMesh.C.
Referenced by NearestNodeLocator::findNodes(), and NearestNodeLocator::updatePatch().
const Moose::PatchUpdateType & MooseMesh::getPatchUpdateStrategy | ( | ) | const |
Get the current patch update strategy.
Definition at line 3163 of file MooseMesh.C.
Referenced by FEProblemBase::possiblyRebuildGeomSearchPatches().
const std::vector< QpMap > & MooseMesh::getPCoarseningMap | ( | const Elem & | elem | ) | const |
Get the map describing for each volumetric quadrature point (qp) on the coarse level which qp on the previous finer level the coarse qp is closest to.
Definition at line 4108 of file MooseMesh.C.
Referenced by ProjectMaterialProperties::onElement().
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private |
Definition at line 4086 of file MooseMesh.C.
Referenced by getPCoarseningMap(), and getPCoarseningSideMap().
const std::vector< QpMap > & MooseMesh::getPCoarseningSideMap | ( | const Elem & | elem | ) | const |
Get the map describing for each side quadrature point (qp) on the coarse level which qp on the previous finer level the coarse qp is closest to.
Definition at line 4114 of file MooseMesh.C.
Referenced by ProjectMaterialProperties::onBoundary().
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virtual |
Proxy function to get a (sub)PointLocator from either the underlying libMesh mesh (default), or to allow derived meshes to return a custom point locator.
Definition at line 3479 of file MooseMesh.C.
Referenced by PointValue::execute(), MultiAppVariableValueSampleTransfer::execute(), ElementsAlongLine::execute(), IntersectionPointsAlongLine::execute(), MultiAppVariableValueSamplePostprocessorTransfer::execute(), FindValueOnLine::initialize(), PointSamplerBase::initialize(), PiecewiseConstantFromCSV::initialSetup(), ReporterPointMarker::markerSetup(), and EqualValueEmbeddedConstraint::prepareSecondaryToPrimaryMap().
const std::vector< QpMap > & MooseMesh::getPRefinementMap | ( | const Elem & | elem | ) | const |
Get the map describing for each volumetric quadrature point (qp) on the refined level which qp on the previous coarser level the fine qp is closest to.
Definition at line 4096 of file MooseMesh.C.
Referenced by ProjectMaterialProperties::onElement().
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private |
Definition at line 4073 of file MooseMesh.C.
Referenced by getPRefinementMap(), and getPRefinementSideMap().
const std::vector< QpMap > & MooseMesh::getPRefinementSideMap | ( | const Elem & | elem | ) | const |
Get the map describing for each side quadrature point (qp) on the refined level which qp on the previous coarser level the fine qp is closest to.
Definition at line 4102 of file MooseMesh.C.
Referenced by ProjectMaterialProperties::onBoundary().
Node * MooseMesh::getQuadratureNode | ( | const Elem * | elem, |
const unsigned short int | side, | ||
const unsigned int | qp | ||
) |
Get a specified quadrature node.
elem | The element the quadrature point is on |
side | The side the quadrature point is on |
qp | The quadrature point number associated with the point |
Definition at line 1444 of file MooseMesh.C.
Referenced by GapValueAux::computeValue(), NearestNodeDistanceAux::computeValue(), PenetrationAux::computeValue(), and GeometricSearchData::updateQuadratureNodes().
const std::vector< std::vector< QpMap > > & MooseMesh::getRefinementMap | ( | const Elem & | elem, |
int | parent_side, | ||
int | child, | ||
int | child_side | ||
) |
Get the refinement map for a given element type.
This will tell you what quadrature points to copy from and to for stateful material properties on newly created elements from Adaptivity.
elem | The element that represents the element type you need the refinement map for. |
parent_side | The side of the parent to map (-1 if not mapping parent sides) |
child | The child number (-1 if not mapping child internal sides) |
child_side | The side number of the child (-1 if not mapping sides) |
TODO: When running with parallel mesh + stateful adaptivty we will need to make sure that each processor has a complete map. This may require parallel communication. This is likely to happen when running on a mixed element mesh.
Definition at line 2262 of file MooseMesh.C.
Referenced by ProjectMaterialProperties::onBoundary(), ProjectMaterialProperties::onElement(), and ProjectMaterialProperties::onInternalSide().
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inherited |
Retrieve a renamed parameter for the object.
This helper makes sure we check both names before erroring, and that only one parameter is passed to avoid silent errors
old_name | the old name for the parameter |
new_name | the new name for the parameter |
Definition at line 217 of file MooseBaseParameterInterface.h.
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protectedinherited |
Declare a piece of data as "restartable" and initialize it Similar to declareRestartableData
but returns a const reference to the object.
Forwarded arguments are not allowed in this case because we assume that the object is restarted and we won't need different constructors to initialize it.
NOTE: This returns a const reference! Make sure you store it in a const reference!
data_name | The name of the data (usually just use the same name as the member variable) |
Definition at line 287 of file Restartable.h.
const std::set< BoundaryID > & MooseMesh::getSubdomainBoundaryIds | ( | const SubdomainID | subdomain_id | ) | const |
Get the list of boundary ids associated with the given subdomain id.
subdomain_id | The subdomain ID you want to get the boundary ids for. |
Definition at line 3247 of file MooseMesh.C.
Referenced by getSubdomainInterfaceBoundaryIds(), and FEProblemBase::prepareMaterials().
SubdomainID MooseMesh::getSubdomainID | ( | const SubdomainName & | subdomain_name | ) | const |
Get the associated subdomain ID for the subdomain name.
subdomain_name | The name of the subdomain |
Definition at line 1513 of file MooseMesh.C.
Referenced by SystemBase::addVariable(), FVInterfaceKernel::FVInterfaceKernel(), SolutionIC::initialSetup(), PiecewiseByBlockFunctorMaterialTempl< T >::PiecewiseByBlockFunctorMaterialTempl(), PiecewiseConstantByBlockMaterialTempl< is_ad >::PiecewiseConstantByBlockMaterialTempl(), setCoordSystem(), and setGeneralAxisymmetricCoordAxes().
std::vector< SubdomainID > MooseMesh::getSubdomainIDs | ( | const std::vector< SubdomainName > & | subdomain_name | ) | const |
Get the associated subdomainIDs for the subdomain names that are passed in.
subdomain_name | The names of the subdomains |
Definition at line 1519 of file MooseMesh.C.
Referenced by MultiAppUserObjectTransfer::execute(), getBlocksMaxDimension(), BlockRestrictable::hasBlocks(), SubdomainsDivision::initialize(), BlockRestrictable::initializeBlockRestrictable(), MultiAppDofCopyTransfer::initialSetup(), MultiAppGeometricInterpolationTransfer::interpolateTargetPoints(), and LayeredBase::LayeredBase().
std::set< BoundaryID > MooseMesh::getSubdomainInterfaceBoundaryIds | ( | const SubdomainID | subdomain_id | ) | const |
Get the list of boundaries that contact the given subdomain.
subdomain_id | The subdomain ID you want to get the boundary ids for. |
Definition at line 3258 of file MooseMesh.C.
const std::string & MooseMesh::getSubdomainName | ( | SubdomainID | subdomain_id | ) | const |
Return the name of a block given an id.
Definition at line 1537 of file MooseMesh.C.
Referenced by FEProblemBase::checkDependMaterialsHelper(), checkDuplicateSubdomainNames(), DomainUserObject::checkVariable(), getSubdomainNames(), NonlinearThread::printBlockExecutionInformation(), and setGeneralAxisymmetricCoordAxes().
std::vector< SubdomainName > MooseMesh::getSubdomainNames | ( | const std::vector< SubdomainID > & | subdomain_ids | ) | const |
Get the associated subdomainNames for the subdomain ids that are passed in.
subdomain_ids | The ids of the subdomains |
Definition at line 1543 of file MooseMesh.C.
Referenced by NonlinearSystemBase::checkKernelCoverage(), and SolutionIC::initialSetup().
Moose::CoordinateSystemType MooseMesh::getUniqueCoordSystem | ( | ) | const |
Get the coordinate system from the mesh, it must be the same in all subdomains otherwise this will error.
Definition at line 3901 of file MooseMesh.C.
void MooseMesh::ghostGhostedBoundaries | ( | ) |
Actually do the ghosting of boundaries that need to be ghosted to this processor.
Definition at line 3064 of file MooseMesh.C.
Referenced by FEProblemBase::ghostGhostedBoundaries().
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Whether mesh has an extra element integer with a given name.
Definition at line 2086 of file MooseMesh.h.
Referenced by getElementIDIndex().
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Definition at line 1366 of file MooseMesh.h.
Referenced by GhostLowerDElems::operator()().
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Whether mesh base object was constructed or not.
Definition at line 1082 of file MooseMesh.h.
Referenced by MeshGeneratorMesh::buildMesh().
bool MooseMesh::hasSecondOrderElements | ( | ) |
check if the mesh has SECOND order elements
Definition at line 3457 of file MooseMesh.C.
Referenced by Assembly::adCurvatures(), Assembly::Assembly(), Assembly::havePRefinement(), and MultiAppGeneralFieldNearestLocationTransfer::initialSetup().
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Initialize the Mesh object.
Most of the time this will turn around and call build_mesh so the child class can build the Mesh object.
However, during Recovery this will read the CPA file...
If the mesh base hasn't been constructed by the time init is called, just do it here. This can happen if somebody builds a mesh outside of the normal Action system. Forcing developers to create, construct the MeshBase, and then init separately is a bit much for casual use but it gives us the ability to run MeshGenerators in-between.
Definition at line 2625 of file MooseMesh.C.
bool MooseMesh::isBoundaryElem | ( | dof_id_type | elem_id | ) | const |
Returns true if the requested element is in the list of boundary elements, false otherwise.
Definition at line 3341 of file MooseMesh.C.
Referenced by BoundaryMarker::computeElementMarker().
bool MooseMesh::isBoundaryElem | ( | dof_id_type | elem_id, |
BoundaryID | bnd_id | ||
) | const |
Returns true if the requested element is in the list of boundary elements for the specified boundary, false otherwise.
Definition at line 3356 of file MooseMesh.C.
bool MooseMesh::isBoundaryFullyExternalToSubdomains | ( | BoundaryID | bid, |
const std::set< SubdomainID > & | blk_group | ||
) | const |
Returns whether a boundary (given by its id) is not crossing through a group of blocks, by which we mean that elements on both sides of the boundary are in those blocks.
bid | the id of the boundary of interest |
blk_group | the group of blocks potentially traversed |
Definition at line 1175 of file MooseMesh.C.
bool MooseMesh::isBoundaryNode | ( | dof_id_type | node_id | ) | const |
Returns true if the requested node is in the list of boundary nodes, false otherwise.
Definition at line 3315 of file MooseMesh.C.
Referenced by LowerBoundNodalKernel::computeQpJacobian(), UpperBoundNodalKernel::computeQpJacobian(), UpperBoundNodalKernel::computeQpOffDiagJacobian(), LowerBoundNodalKernel::computeQpOffDiagJacobian(), UpperBoundNodalKernel::computeQpResidual(), LowerBoundNodalKernel::computeQpResidual(), and NodalNormalsPreprocessor::execute().
bool MooseMesh::isBoundaryNode | ( | dof_id_type | node_id, |
BoundaryID | bnd_id | ||
) | const |
Returns true if the requested node is in the list of boundary nodes for the specified boundary, false otherwise.
Definition at line 3330 of file MooseMesh.C.
bool MooseMesh::isCustomPartitionerRequested | ( | ) | const |
Setter and getter for _custom_partitioner_requested.
Definition at line 3451 of file MooseMesh.C.
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Set whether this mesh is displaced.
Definition at line 1186 of file MooseMesh.h.
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whether this mesh is displaced
Definition at line 1191 of file MooseMesh.h.
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Returns the final Mesh distribution type.
Definition at line 984 of file MooseMesh.h.
Referenced by AddPeriodicBCAction::autoTranslationBoundaries(), BoundaryMarker::BoundaryMarker(), VerifyElementUniqueID::finalize(), VerifyNodalUniqueID::finalize(), ConsoleUtils::outputMeshInformation(), Checkpoint::updateCheckpointFiles(), and RandomData::updateGenerators().
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Definition at line 1282 of file MooseMesh.h.
Referenced by FEProblemBase::meshChangedHelper().
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subdomain_id
is a lower-dimensional manifold of some higher-dimensional subdomain, or in implementation speak, whether the elements of this subdomain have non-null interior parents Definition at line 2132 of file MooseMesh.h.
Referenced by MooseVariableBase::MooseVariableBase().
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Tell the user if the distribution was overriden for any reason.
Definition at line 989 of file MooseMesh.h.
Referenced by ConsoleUtils::outputMeshInformation().
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Test if the supplied parameter is set by a user, as opposed to not set or set to default.
nm | The name of the parameter to test |
Definition at line 118 of file MooseBaseParameterInterface.h.
Referenced by SetupDebugAction::act(), SetAdaptivityOptionsAction::act(), ADConservativeAdvectionBC::ADConservativeAdvectionBC(), PhysicsBase::checkSecondParamSetOnlyIfFirstOneTrue(), LibtorchNeuralNetControl::conditionalParameterError(), MooseBaseParameterInterface::getRenamedParam(), MeshDiagnosticsGenerator::MeshDiagnosticsGenerator(), MultiAppGeneralFieldTransfer::MultiAppGeneralFieldTransfer(), Output::Output(), MultiAppGeneralFieldTransfer::outputValueConflicts(), PiecewiseTabularBase::PiecewiseTabularBase(), prepare(), and SolutionUserObject::readXda().
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Test if the supplied parameter is valid.
name | The name of the parameter to test |
Definition at line 112 of file MooseBaseParameterInterface.h.
Referenced by CopyNodalVarsAction::act(), SetupMeshAction::act(), ComposeTimeStepperAction::act(), SetupDebugAction::act(), CreateDisplacedProblemAction::act(), SetAdaptivityOptionsAction::act(), CommonOutputAction::act(), ADConservativeAdvectionBC::ADConservativeAdvectionBC(), DiffusionCG::addFEBCs(), DiffusionCG::addFEKernels(), DiffusionFV::addFVBCs(), DiffusionFV::addFVKernels(), DiffusionCG::addNonlinearVariables(), AdvectiveFluxAux::AdvectiveFluxAux(), ArrayHFEMDirichletBC::ArrayHFEMDirichletBC(), AddPeriodicBCAction::autoTranslationBoundaries(), BicubicSplineFunction::BicubicSplineFunction(), BlockDeletionGenerator::BlockDeletionGenerator(), PiecewiseTabularBase::buildFromFile(), PiecewiseTabularBase::buildFromJSON(), GeneratedMesh::buildMesh(), CartesianGridDivision::CartesianGridDivision(), CartesianMeshGenerator::CartesianMeshGenerator(), PhysicsBase::checkParamsBothSetOrNotSet(), PhysicsBase::checkVectorParamsSameLength(), LibmeshPartitioner::clone(), OversampleOutput::cloneMesh(), CombinerGenerator::CombinerGenerator(), CSVReaderVectorPostprocessor::CSVReaderVectorPostprocessor(), CutMeshByPlaneGenerator::CutMeshByPlaneGenerator(), ConstantReporter::declareConstantReporterValues(), DGKernelBase::DGKernelBase(), DiffusionFluxAux::DiffusionFluxAux(), DomainUserObject::DomainUserObject(), DynamicObjectRegistrationAction::DynamicObjectRegistrationAction(), Eigenvalue::Eigenvalue(), ElementExtremeFunctorValueTempl< is_ad >::ElementExtremeFunctorValueTempl(), ElementExtremeValue::ElementExtremeValue(), ElementGroupCentroidPositions::ElementGroupCentroidPositions(), PIDTransientControl::execute(), MultiAppNearestNodeTransfer::execute(), MultiAppUserObjectTransfer::execute(), Exodus::Exodus(), ExtraIDIntegralReporter::ExtraIDIntegralReporter(), FEProblemBase::FEProblemBase(), FEProblemSolve::FEProblemSolve(), FieldSplitPreconditioner::FieldSplitPreconditioner(), FileOutput::FileOutput(), SpatialUserObjectVectorPostprocessor::fillPoints(), CombinerGenerator::fillPositions(), MultiApp::fillPositions(), FiniteDifferencePreconditioner::FiniteDifferencePreconditioner(), FunctionDT::FunctionDT(), FunctionValuePostprocessor::FunctionValuePostprocessor(), FVInterfaceKernel::FVInterfaceKernel(), FVMassMatrix::FVMassMatrix(), ExtraNodesetGenerator::generate(), FileMeshGenerator::generate(), LowerDBlockFromSidesetGenerator::generate(), SubdomainPerElementGenerator::generate(), AddMetaDataGenerator::generate(), BreakBoundaryOnSubdomainGenerator::generate(), GeneratedMeshGenerator::generate(), ParsedSubdomainMeshGenerator::generate(), SideSetsBetweenSubdomainsGenerator::generate(), BlockDeletionGenerator::generate(), MeshExtruderGenerator::generate(), XYDelaunayGenerator::generate(), ParsedGenerateSideset::generate(), SubdomainBoundingBoxGenerator::generate(), DistributedRectilinearMeshGenerator::generate(), MultiAppNearestNodeTransfer::getLocalEntitiesAndComponents(), MeshGenerator::getMeshGeneratorNameFromParam(), MeshGenerator::getMeshGeneratorNamesFromParam(), MooseBaseParameterInterface::getRenamedParam(), MultiAppNearestNodeTransfer::getTargetLocalNodes(), Terminator::handleMessage(), HFEMDirichletBC::HFEMDirichletBC(), EigenExecutionerBase::init(), IterationAdaptiveDT::init(), Eigenvalue::init(), AdvancedOutput::initExecutionTypes(), BlockRestrictable::initializeBlockRestrictable(), BoundaryRestrictable::initializeBoundaryRestrictable(), MultiAppCloneReporterTransfer::initialSetup(), MultiAppVariableValueSampleTransfer::initialSetup(), PiecewiseTabularBase::initialSetup(), SolutionScalarAux::initialSetup(), SolutionAux::initialSetup(), Console::initialSetup(), MooseParsedVectorFunction::initialSetup(), MultiAppGeneralFieldTransfer::initialSetup(), MooseParsedGradFunction::initialSetup(), MooseParsedFunction::initialSetup(), IterationAdaptiveDT::IterationAdaptiveDT(), LeastSquaresFit::LeastSquaresFit(), LibmeshPartitioner::LibmeshPartitioner(), LibtorchNeuralNetControl::LibtorchNeuralNetControl(), MassMatrix::MassMatrix(), MatCoupledForce::MatCoupledForce(), MatDiffusionBase< Real >::MatDiffusionBase(), MooseMesh(), MoosePreconditioner::MoosePreconditioner(), MooseVariableBase::MooseVariableBase(), MooseVariableFV< Real >::MooseVariableFV(), MortarConstraintBase::MortarConstraintBase(), MoveNodeGenerator::MoveNodeGenerator(), MultiApp::MultiApp(), MultiAppCloneReporterTransfer::MultiAppCloneReporterTransfer(), MultiAppGeneralFieldNearestLocationTransfer::MultiAppGeneralFieldNearestLocationTransfer(), MultiAppGeneralFieldShapeEvaluationTransfer::MultiAppGeneralFieldShapeEvaluationTransfer(), MultiAppGeneralFieldTransfer::MultiAppGeneralFieldTransfer(), MultiAppGeneralFieldUserObjectTransfer::MultiAppGeneralFieldUserObjectTransfer(), MultiAppPostprocessorInterpolationTransfer::MultiAppPostprocessorInterpolationTransfer(), MultiAppPostprocessorTransfer::MultiAppPostprocessorTransfer(), MultiAppReporterTransfer::MultiAppReporterTransfer(), MultiAppTransfer::MultiAppTransfer(), MultiAppUserObjectTransfer::MultiAppUserObjectTransfer(), MultiAppVariableValueSampleTransfer::MultiAppVariableValueSampleTransfer(), NodalExtremeValue::NodalExtremeValue(), EigenExecutionerBase::normalizeSolution(), Output::Output(), MultiAppGeneralFieldTransfer::outputValueConflicts(), ParsedCurveGenerator::ParsedCurveGenerator(), ParsedGenerateSideset::ParsedGenerateSideset(), PetscOutput::PetscOutput(), PhysicsBasedPreconditioner::PhysicsBasedPreconditioner(), PicardSolve::PicardSolve(), PIDTransientControl::PIDTransientControl(), PiecewiseTabularBase::PiecewiseTabularBase(), PlaneIDMeshGenerator::PlaneIDMeshGenerator(), prepare(), MultiApp::readCommandLineArguments(), SolutionUserObject::readExodusII(), RenameBlockGenerator::RenameBlockGenerator(), RenameBoundaryGenerator::RenameBoundaryGenerator(), ReporterPointSource::ReporterPointSource(), setCoordSystem(), FileOutput::setFileBase(), FileOutput::setFileBaseInternal(), Split::setup(), SetupMeshAction::setupMesh(), SideDiffusiveFluxIntegralTempl< is_ad, Real >::SideDiffusiveFluxIntegralTempl(), SideExtremeValue::SideExtremeValue(), SolutionUserObject::SolutionUserObject(), Terminator::Terminator(), TimeIntervalTimes::TimeIntervalTimes(), TimePeriod::TimePeriod(), MultiAppDofCopyTransfer::transfer(), TransformGenerator::TransformGenerator(), VariableCondensationPreconditioner::VariableCondensationPreconditioner(), and VectorMagnitudeFunctorMaterialTempl< is_ad >::VectorMagnitudeFunctorMaterialTempl().
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Tell the user if the partitioner was overriden for any reason.
Definition at line 1004 of file MooseMesh.h.
Referenced by ConsoleUtils::outputMeshInformation().
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Getter to query if the mesh was detected to be regular and orthogonal.
Definition at line 1034 of file MooseMesh.h.
bool MooseMesh::isSemiLocal | ( | Node *const | node | ) | const |
Returns true if the node is semi-local.
node | Node pointer |
Definition at line 794 of file MooseMesh.C.
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Definition at line 1305 of file MooseMesh.h.
Referenced by ConsoleUtils::outputMeshInformation().
bool MooseMesh::isTranslatedPeriodic | ( | unsigned int | nonlinear_var_num, |
unsigned int | component | ||
) | const |
Returns whether this generated mesh is periodic in the given dimension for the given variable.
nonlinear_var_num | - The nonlinear variable number |
component | - An integer representing the desired component (dimension) |
Definition at line 1994 of file MooseMesh.C.
Referenced by minPeriodicVector().
const MooseUnits & MooseMesh::lengthUnit | ( | ) | const |
Definition at line 4046 of file MooseMesh.C.
MeshBase::node_iterator MooseMesh::localNodesBegin | ( | ) |
Calls local_nodes_begin/end() on the underlying libMesh mesh object.
Definition at line 2777 of file MooseMesh.C.
Referenced by OversampleOutput::updateOversample().
MeshBase::const_node_iterator MooseMesh::localNodesBegin | ( | ) | const |
Definition at line 2789 of file MooseMesh.C.
MeshBase::node_iterator MooseMesh::localNodesEnd | ( | ) |
Definition at line 2783 of file MooseMesh.C.
Referenced by OversampleOutput::updateOversample().
MeshBase::const_node_iterator MooseMesh::localNodesEnd | ( | ) | const |
Definition at line 2795 of file MooseMesh.C.
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Find the closest points that map "from" to "to" and fill up "qp_map".
Essentially, for each point in "from" find the closest point in "to".
from | The reference positions in the parent of the the points we're mapping from |
to | The reference positions in the parent of the the points we're mapping to |
qp_map | This will be filled with QpMap objects holding the mappings. |
Definition at line 2337 of file MooseMesh.C.
Referenced by buildPRefinementAndCoarseningMaps(), and findAdaptivityQpMaps().
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Return the maximum element ID for an extra element integer with its accessing index.
Definition at line 1097 of file MooseMesh.h.
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Definition at line 2843 of file MooseMesh.C.
Referenced by SolutionUserObject::pointValueGradientWrapper(), and SolutionUserObject::pointValueWrapper().
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Calls max_node/elem_id() on the underlying libMesh mesh object.
This may be larger than n_nodes/elem() in cases where the id numbering is not contiguous.
Definition at line 2837 of file MooseMesh.C.
const std::set< BoundaryID > & MooseMesh::meshBoundaryIds | ( | ) | const |
Returns a read-only reference to the set of boundary IDs currently present in the Mesh.
Definition at line 2927 of file MooseMesh.C.
Referenced by BoundaryRestrictable::isBoundarySubset().
void MooseMesh::meshChanged | ( | ) |
Declares that the MooseMesh has changed, invalidates cached data and rebuilds caches.
Sets a flag so that clients of the MooseMesh also know when it has changed.
Definition at line 684 of file MooseMesh.C.
Referenced by DisplacedProblem::init(), FEProblemBase::init(), DisplacedProblem::meshChanged(), and FEProblemBase::meshChangedHelper().
const std::set< BoundaryID > & MooseMesh::meshNodesetIds | ( | ) | const |
Returns a read-only reference to the set of nodesets currently present in the Mesh.
Definition at line 2939 of file MooseMesh.C.
Referenced by GeometricSearchData::GeometricSearchData(), and BoundaryRestrictable::initializeBoundaryRestrictable().
const std::set< BoundaryID > & MooseMesh::meshSidesetIds | ( | ) | const |
Returns a read-only reference to the set of sidesets currently present in the Mesh.
Definition at line 2933 of file MooseMesh.C.
Referenced by DGKernelBase::DGKernelBase(), and BoundaryRestrictable::initializeBoundaryRestrictable().
const std::set< SubdomainID > & MooseMesh::meshSubdomains | ( | ) | const |
Returns a read-only reference to the set of subdomains currently present in the Mesh.
Definition at line 2921 of file MooseMesh.C.
Referenced by FEProblemBase::adaptMesh(), BlockRestrictable::blockIDs(), buildElemIDInfo(), FEProblemBase::checkProblemIntegrity(), FEProblemBase::checkUserObjects(), NonlinearSystemBase::constraintJacobians(), NonlinearSystemBase::constraintResiduals(), getUniqueCoordSystem(), FEProblemBase::initialAdaptMesh(), BlockRestrictable::initializeBlockRestrictable(), MultiAppDofCopyTransfer::initialSetup(), BlockRestrictable::isBlockSubset(), BlockRestrictable::meshBlockIDs(), MooseMesh(), DOFMapOutput::output(), NonlinearSystemBase::setConstraintSecondaryValues(), setCoordSystem(), and setGeneralAxisymmetricCoordAxes().
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Return the minimum element ID for an extra element integer with its accessing index.
Definition at line 1102 of file MooseMesh.h.
This function returns the distance between two points on the mesh taking into account periodicity for the given variable number.
nonlinear_var_num | - The nonlinear variable number |
p,q | - The points for which to compute a minimum distance |
Definition at line 2030 of file MooseMesh.C.
RealVectorValue MooseMesh::minPeriodicVector | ( | unsigned int | nonlinear_var_num, |
Point | p, | ||
Point | q | ||
) | const |
This function returns the minimum vector between two points on the mesh taking into account periodicity for the given variable number.
nonlinear_var_num | - The nonlinear variable number |
p,q | - The points between which to compute a minimum vector |
Definition at line 2005 of file MooseMesh.C.
Referenced by minPeriodicDistance().
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Definition at line 78 of file MooseBaseErrorInterface.h.
Referenced by FEProblemBase::addAuxArrayVariable(), FEProblemBase::addAuxScalarVariable(), FEProblemBase::addAuxVariable(), FEProblemBase::advanceMultiApps(), MultiApp::appProblem(), Executioner::augmentedPicardConvergenceCheck(), buildSideList(), ChangeOverTimestepPostprocessor::ChangeOverTimestepPostprocessor(), FEProblemBase::computeResidual(), AddVariableAction::determineType(), EigenProblem::EigenProblem(), Eigenvalue::Eigenvalue(), elem(), UserForcingFunction::f(), FaceFaceConstraint::FaceFaceConstraint(), FunctionDT::FunctionDT(), RandomICBase::generateRandom(), getBoundariesToElems(), Control::getExecuteOptions(), FEProblemBase::getNonlinearSystem(), FEProblemBase::getUserObjects(), FEProblemBase::hasPostprocessor(), MatDiffusionBase< Real >::MatDiffusionBase(), MultiAppNearestNodeTransfer::MultiAppNearestNodeTransfer(), MultiAppShapeEvaluationTransfer::MultiAppShapeEvaluationTransfer(), MultiAppUserObjectTransfer::MultiAppUserObjectTransfer(), NodalScalarKernel::NodalScalarKernel(), node(), FixedPointSolve::numPicardIts(), RelationshipManager::operator>=(), PercentChangePostprocessor::PercentChangePostprocessor(), Executioner::picardSolve(), ReferenceResidualProblem::ReferenceResidualProblem(), setBoundaryToNormalMap(), Exodus::setOutputDimension(), and UserForcingFunction::UserForcingFunction().
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Emits an error prefixed with object name and type.
Definition at line 38 of file MooseBaseErrorInterface.h.
Referenced by HierarchicalGridPartitioner::_do_partition(), PetscExternalPartitioner::_do_partition(), MultiAppGeneralFieldTransfer::acceptPointInOriginMesh(), SetupMeshCompleteAction::act(), AddVectorPostprocessorAction::act(), AutoCheckpointAction::act(), InitProblemAction::act(), AddMeshGeneratorAction::act(), AddFVICAction::act(), CheckFVBCAction::act(), CheckIntegrityAction::act(), CreateExecutionerAction::act(), AddICAction::act(), CreateProblemAction::act(), CreateProblemDefaultAction::act(), SetupMeshAction::act(), SplitMeshAction::act(), AdaptivityAction::act(), SetupPredictorAction::act(), SetupTimeStepperAction::act(), AddTimeStepperAction::act(), DeprecatedBlockAction::act(), CreateDisplacedProblemAction::act(), MaterialDerivativeTestAction::act(), SetAdaptivityOptionsAction::act(), AddPeriodicBCAction::act(), CommonOutputAction::act(), MaterialOutputAction::act(), FEProblemBase::adaptMesh(), ADConservativeAdvectionBC::ADConservativeAdvectionBC(), FEProblemBase::addConstraint(), DistributedRectilinearMeshGenerator::addElement(), FEProblemBase::addFunction(), SubProblem::addFunctor(), FEProblemBase::addFVInitialCondition(), ADDGKernel::ADDGKernel(), FEProblemBase::addInitialCondition(), FEProblem::addLineSearch(), FEProblemBase::addLineSearch(), MeshGenerator::addMeshSubgenerator(), FEProblemBase::addOutput(), SubProblem::addPiecewiseByBlockLambdaFunctor(), DiracKernelBase::addPoint(), DistributedRectilinearMeshGenerator::addPoint(), DiracKernelBase::addPointWithValidId(), FEProblemBase::addPostprocessor(), CreateDisplacedProblemAction::addProxyRelationshipManagers(), addQuadratureNode(), Action::addRelationshipManager(), FEProblemBase::addReporter(), AddVariableAction::addVariable(), FEProblemBase::addVectorPostprocessor(), SubProblem::addVectorTag(), ADInterfaceKernelTempl< T >::ADInterfaceKernelTempl(), ADPiecewiseLinearInterpolationMaterial::ADPiecewiseLinearInterpolationMaterial(), MooseVariableScalar::adUDot(), Output::advancedExecuteOn(), AdvectiveFluxAux::AdvectiveFluxAux(), MooseVariableBase::allDofIndices(), MultiApp::appPostprocessorValue(), MultiApp::appProblem(), MultiApp::appProblemBase(), MultiApp::appUserObjectBase(), ArrayConstantIC::ArrayConstantIC(), ArrayDGKernel::ArrayDGKernel(), ArrayDiffusion::ArrayDiffusion(), ArrayFunctionIC::ArrayFunctionIC(), ArrayParsedAux::ArrayParsedAux(), ArrayReaction::ArrayReaction(), ArrayTimeDerivative::ArrayTimeDerivative(), AddPeriodicBCAction::autoTranslationBoundaries(), AuxKernelTempl< Real >::AuxKernelTempl(), Function::average(), Axisymmetric2D3DSolutionFunction::Axisymmetric2D3DSolutionFunction(), BicubicSplineFunction::BicubicSplineFunction(), BlockDeletionGenerator::BlockDeletionGenerator(), BoundingValueElementDamper::BoundingValueElementDamper(), BoundingValueNodalDamper::BoundingValueNodalDamper(), BreakMeshByBlockGeneratorBase::BreakMeshByBlockGeneratorBase(), buildCoarseningMap(), MultiApp::buildComm(), DistributedRectilinearMeshGenerator::buildCube(), PiecewiseTabularBase::buildFromFile(), PiecewiseTabularBase::buildFromJSON(), PiecewiseTabularBase::buildFromXY(), PiecewiseLinearBase::buildInterpolation(), buildLowerDMesh(), TiledMesh::buildMesh(), GeneratedMesh::buildMesh(), SpiralAnnularMesh::buildMesh(), MeshGeneratorMesh::buildMesh(), ImageMeshGenerator::buildMesh3D(), ImageMesh::buildMesh3D(), buildRefinementMap(), MaterialBase::buildRequiredMaterials(), buildSideList(), buildTypedMesh(), cacheFaceInfoVariableOwnership(), CartesianGridDivision::CartesianGridDivision(), CartesianMeshGenerator::CartesianMeshGenerator(), UserObjectInterface::castUserObject(), ChangeOverFixedPointPostprocessor::ChangeOverFixedPointPostprocessor(), ChangeOverTimePostprocessor::ChangeOverTimePostprocessor(), EigenExecutionerBase::chebyshev(), SubProblem::checkBlockMatProps(), SubProblem::checkBoundaryMatProps(), checkCoordinateSystems(), FEProblemBase::checkDependMaterialsHelper(), FEProblemBase::checkDisplacementOrders(), FEProblemBase::checkDuplicatePostprocessorVariableNames(), checkDuplicateSubdomainNames(), FEProblemBase::checkExceptionAndStopSolve(), MaterialBase::checkExecutionStage(), MeshGenerator::checkGetMesh(), ReporterTransferInterface::checkHasReporterValue(), FEProblemBase::checkICRestartError(), Steady::checkIntegrity(), EigenExecutionerBase::checkIntegrity(), Eigenvalue::checkIntegrity(), ExplicitTimeIntegrator::checkLinearConvergence(), MeshDiagnosticsGenerator::checkNonConformalMeshFromAdaptivity(), PostprocessorInterface::checkParam(), FEProblemBase::checkProblemIntegrity(), Sampler::checkReinitStatus(), MultiAppPostprocessorToAuxScalarTransfer::checkSiblingsTransferSupported(), MultiAppScalarToAuxScalarTransfer::checkSiblingsTransferSupported(), MultiAppPostprocessorTransfer::checkSiblingsTransferSupported(), MultiAppReporterTransfer::checkSiblingsTransferSupported(), MultiAppCopyTransfer::checkSiblingsTransferSupported(), MultiAppTransfer::checkSiblingsTransferSupported(), MaterialBase::checkStatefulSanity(), FEProblemBase::checkUserObjects(), DomainUserObject::checkVariable(), MultiAppTransfer::checkVariable(), PhysicsBase::checkVectorParamsNoOverlap(), LibmeshPartitioner::clone(), clone(), CombinerGenerator::CombinerGenerator(), ComparisonPostprocessor::comparisonIsTrue(), ElementSubdomainModifier::complementMovingBoundaryID(), ElementSubdomainModifier::complementMovingBoundaryName(), MooseVariableFieldBase::componentName(), CompositeFunction::CompositeFunction(), ElementH1ErrorFunctionAux::compute(), NodalPatchRecovery::compute(), FEProblemBase::computeBounds(), VariableCondensationPreconditioner::computeDInverseDiag(), CompositionDT::computeDT(), ArrayDGKernel::computeElemNeighJacobian(), ArrayDGKernel::computeElemNeighResidual(), InternalSideIntegralPostprocessor::computeFaceInfoIntegral(), SideIntegralPostprocessor::computeFaceInfoIntegral(), MooseVariableFieldBase::computeFaceValues(), TimeSequenceStepperBase::computeFailedDT(), IterationAdaptiveDT::computeFailedDT(), TimeStepper::computeFailedDT(), computeFiniteVolumeCoords(), HistogramVectorPostprocessor::computeHistogram(), ArrayKernel::computeJacobian(), ArrayIntegratedBC::computeJacobian(), FVFluxKernel::computeJacobian(), NodalConstraint::computeJacobian(), FEProblemBase::computeJacobianTags(), LowerDIntegratedBC::computeLowerDOffDiagJacobian(), ArrayLowerDIntegratedBC::computeLowerDOffDiagJacobian(), EigenProblem::computeMatricesTags(), ArrayDGKernel::computeOffDiagElemNeighJacobian(), ArrayKernel::computeOffDiagJacobian(), ArrayIntegratedBC::computeOffDiagJacobian(), FVElementalKernel::computeOffDiagJacobian(), MortarScalarBase::computeOffDiagJacobianScalar(), DGLowerDKernel::computeOffDiagLowerDJacobian(), ArrayDGLowerDKernel::computeOffDiagLowerDJacobian(), MaterialBase::computeProperties(), ScalarKernel::computeQpJacobian(), CoupledTiedValueConstraint::computeQpJacobian(), TiedValueConstraint::computeQpJacobian(), NodalEqualValueConstraint::computeQpJacobian(), LinearNodalConstraint::computeQpJacobian(), EqualValueBoundaryConstraint::computeQpJacobian(), EqualValueEmbeddedConstraint::computeQpJacobian(), CoupledTiedValueConstraint::computeQpOffDiagJacobian(), EqualValueEmbeddedConstraint::computeQpOffDiagJacobian(), ScalarKernel::computeQpResidual(), NodalEqualValueConstraint::computeQpResidual(), KernelValue::computeQpResidual(), InterfaceQpValueUserObject::computeRealValue(), ArrayKernel::computeResidual(), ArrayIntegratedBC::computeResidual(), FVFluxBC::computeResidual(), FVFluxKernel::computeResidual(), NodalConstraint::computeResidual(), FVFluxKernel::computeResidualAndJacobian(), ResidualObject::computeResidualAndJacobian(), FEProblemBase::computeResidualAndJacobian(), FEProblemBase::computeResidualInternal(), FEProblemBase::computeResidualL2Norm(), FEProblemBase::computeResidualTag(), FEProblemBase::computeResidualTags(), FEProblemBase::computeResidualType(), KernelScalarBase::computeScalarOffDiagJacobian(), ADKernelScalarBase::computeScalarQpResidual(), ADMortarScalarBase::computeScalarQpResidual(), MortarScalarBase::computeScalarQpResidual(), KernelScalarBase::computeScalarQpResidual(), TimeStepper::computeStep(), ActuallyExplicitEuler::computeTimeDerivatives(), ExplicitEuler::computeTimeDerivatives(), ImplicitEuler::computeTimeDerivatives(), BDF2::computeTimeDerivatives(), NewmarkBeta::computeTimeDerivatives(), CentralDifference::computeTimeDerivatives(), CrankNicolson::computeTimeDerivatives(), LStableDirk2::computeTimeDerivatives(), LStableDirk3::computeTimeDerivatives(), ImplicitMidpoint::computeTimeDerivatives(), ExplicitTVDRK2::computeTimeDerivatives(), AStableDirk4::computeTimeDerivatives(), LStableDirk4::computeTimeDerivatives(), ExplicitRK2::computeTimeDerivatives(), MultiAppGeometricInterpolationTransfer::computeTransformation(), BuildArrayVariableAux::computeValue(), TagVectorArrayVariableAux::computeValue(), PenetrationAux::computeValue(), ConcentricCircleMesh::ConcentricCircleMesh(), ConditionalEnableControl::ConditionalEnableControl(), TimeStepper::constrainStep(), LibtorchNeuralNetControl::controlNeuralNet(), CoupledForceNodalKernel::CoupledForceNodalKernel(), MultiApp::createApp(), AddVariableAction::createInitialConditionAction(), Function::curl(), MooseVariableFV< Real >::curlPhi(), SidesetInfoVectorPostprocessor::dataHelper(), ReporterTransferInterface::declareClone(), MeshGenerator::declareMeshProperty(), ReporterTransferInterface::declareVectorClone(), FunctorRelationshipManager::delete_remote_elements(), deleteRemoteElements(), BicubicSplineFunction::derivative(), DerivativeSumMaterialTempl< is_ad >::DerivativeSumMaterialTempl(), detectPairedSidesets(), FEProblemBase::determineNonlinearSystem(), DGKernel::DGKernel(), MeshDiagnosticsGenerator::diagnosticsLog(), DistributedPositions::DistributedPositions(), Function::div(), FunctorBinnedValuesDivision::divisionIndex(), MooseVariableFV< Real >::divPhi(), FunctorRelationshipManager::dofmap_reinit(), EigenProblem::doFreeNonlinearPowerIterations(), FEProblemBase::duplicateVariableCheck(), EigenProblem::EigenProblem(), Eigenvalue::Eigenvalue(), Eigenvalues::Eigenvalues(), ElementalVariableValue::ElementalVariableValue(), ElementGroupCentroidPositions::ElementGroupCentroidPositions(), ElementIntegerAux::ElementIntegerAux(), ElementQualityAux::ElementQualityAux(), ElementUOAux::ElementUOAux(), DistributedRectilinearMeshGenerator::elemId(), ProjectionAux::elemOnNodeVariableIsDefinedOn(), errorIfDistributedMesh(), SolutionUserObject::evalMeshFunction(), SolutionUserObject::evalMeshFunctionGradient(), SolutionUserObject::evalMultiValuedMeshFunction(), SolutionUserObject::evalMultiValuedMeshFunctionGradient(), MultiAppGeneralFieldTransfer::examineReceivedValueConflicts(), RestartableDataReporter::execute(), DiscreteElementUserObject::execute(), MultiAppPostprocessorToAuxScalarTransfer::execute(), MultiAppScalarToAuxScalarTransfer::execute(), NodalValueSampler::execute(), MultiAppPostprocessorInterpolationTransfer::execute(), ElementQualityChecker::execute(), MultiAppPostprocessorTransfer::execute(), PositionsFunctorValueSampler::execute(), PointValue::execute(), MultiAppVariableValueSampleTransfer::execute(), GreaterThanLessThanPostprocessor::execute(), MultiAppVariableValueSamplePostprocessorTransfer::execute(), FindValueOnLine::execute(), MultiAppNearestNodeTransfer::execute(), MultiAppCopyTransfer::execute(), MultiAppGeometricInterpolationTransfer::execute(), InterfaceQpUserObjectBase::execute(), MultiAppUserObjectTransfer::execute(), LeastSquaresFit::execute(), VectorPostprocessorComparison::execute(), LeastSquaresFitHistory::execute(), TimeExtremeValue::execute(), Eigenvalue::execute(), DomainUserObject::execute(), FEProblemBase::execute(), FEProblemBase::executeControls(), MultiAppVectorPostprocessorTransfer::executeFromMultiapp(), MultiAppVectorPostprocessorTransfer::executeToMultiapp(), Exodus::Exodus(), ExplicitSSPRungeKutta::ExplicitSSPRungeKutta(), MultiAppGeneralFieldTransfer::extractOutgoingPoints(), FileOutput::FileOutput(), QuadraturePointMultiApp::fillPositions(), CentroidMultiApp::fillPositions(), MultiApp::fillPositions(), MultiAppGeometricInterpolationTransfer::fillSourceInterpolationPoints(), VerifyElementUniqueID::finalize(), VerifyNodalUniqueID::finalize(), DiscreteElementUserObject::finalize(), ElementQualityChecker::finalize(), MemoryUsage::finalize(), PointSamplerBase::finalize(), NearestPointAverage::finalize(), NearestPointIntegralVariablePostprocessor::finalize(), Transfer::find_sys(), BreakMeshByBlockGeneratorBase::findFreeBoundaryId(), FunctionDT::FunctionDT(), FunctionMaterialBase< is_ad >::FunctionMaterialBase(), FunctionScalarAux::FunctionScalarAux(), FunctionScalarIC::FunctionScalarIC(), MaterialOutputAction::functorMaterialOutputHelper(), FunctorSmootherTempl< T >::FunctorSmootherTempl(), FVInitialConditionTempl< T >::FVInitialConditionTempl(), FVMassMatrix::FVMassMatrix(), FVMatAdvection::FVMatAdvection(), FVScalarLagrangeMultiplierInterface::FVScalarLagrangeMultiplierInterface(), GapValueAux::GapValueAux(), WorkBalance::gather(), LowerDBlockFromSidesetGenerator::generate(), BlockToMeshConverterGenerator::generate(), ExtraNodesetGenerator::generate(), FileMeshGenerator::generate(), MoveNodeGenerator::generate(), PlaneIDMeshGenerator::generate(), RenameBlockGenerator::generate(), RenameBoundaryGenerator::generate(), SideSetsFromNormalsGenerator::generate(), SmoothMeshGenerator::generate(), SubdomainPerElementGenerator::generate(), TiledMeshGenerator::generate(), CoarsenBlockGenerator::generate(), CutMeshByPlaneGenerator::generate(), BreakMeshByBlockGenerator::generate(), GeneratedMeshGenerator::generate(), MeshDiagnosticsGenerator::generate(), MeshRepairGenerator::generate(), FlipSidesetGenerator::generate(), SideSetsFromPointsGenerator::generate(), MeshExtruderGenerator::generate(), MeshCollectionGenerator::generate(), SideSetsFromBoundingBoxGenerator::generate(), StackGenerator::generate(), StitchedMeshGenerator::generate(), CombinerGenerator::generate(), AllSideSetsByNormalsGenerator::generate(), SpiralAnnularMeshGenerator::generate(), XYDelaunayGenerator::generate(), XYMeshLineCutter::generate(), PatternedMeshGenerator::generate(), SubdomainBoundingBoxGenerator::generate(), DistributedRectilinearMeshGenerator::generate(), BoundingBoxNodeSetGenerator::generate(), MeshGenerator::generateData(), GeneratedMesh::GeneratedMesh(), GeneratedMeshGenerator::GeneratedMeshGenerator(), MeshGenerator::generateInternal(), CircularBoundaryCorrectionGenerator::generateRadialCorrectionFactor(), RandomICBase::generateRandom(), GenericConstantMaterialTempl< is_ad >::GenericConstantMaterialTempl(), GenericConstantVectorMaterialTempl< is_ad >::GenericConstantVectorMaterialTempl(), GenericFunctionMaterialTempl< is_ad >::GenericFunctionMaterialTempl(), GenericFunctionVectorMaterialTempl< is_ad >::GenericFunctionVectorMaterialTempl(), GenericFunctorGradientMaterialTempl< is_ad >::GenericFunctorGradientMaterialTempl(), GenericFunctorMaterialTempl< is_ad >::GenericFunctorMaterialTempl(), GenericVectorFunctorMaterialTempl< is_ad >::GenericVectorFunctorMaterialTempl(), DisplacedProblem::getActualFieldVariable(), FEProblemBase::getActualFieldVariable(), DisplacedProblem::getArrayVariable(), FEProblemBase::getArrayVariable(), getAxisymmetricRadialCoord(), getBlockConnectedBlocks(), VariableOldValueBounds::getBound(), getBoundaryID(), MultiApp::getBoundingBox(), getCoarseningMap(), MooseVariableBase::getContinuity(), Control::getControllableParameterByName(), getCoordSystem(), PhysicsBase::getCoupledPhysics(), PropertyReadFile::getData(), TransfiniteMeshGenerator::getDiscreteEdge(), FEProblemBase::getDistribution(), MooseVariableBase::getDofIndices(), VariableCondensationPreconditioner::getDofToCondense(), TransfiniteMeshGenerator::getEdge(), GhostingUserObject::getElementalValue(), ElementUOProvider::getElementalValueLong(), ElementUOProvider::getElementalValueReal(), PropertyReadFile::getElementData(), getElementIDIndex(), Material::getElementIDNeighbor(), Material::getElementIDNeighborByName(), getElemIDMapping(), getElemIDsOnBlocks(), MultiAppFieldTransfer::getEquationSystem(), MultiApp::getExecutioner(), MultiAppTransfer::getFromMultiApp(), MultiAppTransfer::getFromMultiAppInfo(), FEProblemBase::getFunction(), SubProblem::getFunctor(), getGeneralAxisymmetricCoordAxis(), DistributedRectilinearMeshGenerator::getGhostNeighbors(), BatchMaterial< Tuple, Output, Input >::getIndex(), DistributedRectilinearMeshGenerator::getIndices(), SolutionUserObject::getLocalVarIndex(), Material::getMaterialByName(), FEProblemBase::getMaterialData(), SubProblem::getMatrixTagID(), AnnularMesh::getMaxInDimension(), GeneratedMesh::getMaxInDimension(), FEProblemBase::getMaxQps(), FEProblemBase::getMeshDivision(), MeshGenerator::getMeshGeneratorNameFromParam(), MeshGenerator::getMeshGeneratorNamesFromParam(), AnnularMesh::getMinInDimension(), GeneratedMesh::getMinInDimension(), MultiAppTransfer::getMultiApp(), DistributedRectilinearMeshGenerator::getNeighbors(), Times::getNextTime(), getNodeBlockIds(), PropertyReadFile::getNodeData(), getNodeList(), EigenProblem::getNonlinearEigenSystem(), FEProblemBase::getNonlinearSystem(), getPairedBoundaryMapping(), ImageMeshGenerator::GetPixelInfo(), ImageMesh::GetPixelInfo(), PlaneIDMeshGenerator::getPlaneID(), Positions::getPosition(), Positions::getPositions(), FEProblemBase::getPositionsObject(), Positions::getPositionsVector2D(), Positions::getPositionsVector3D(), Positions::getPositionsVector4D(), PostprocessorInterface::getPostprocessorValueByNameInternal(), Times::getPreviousTime(), InterfaceQpUserObjectBase::getQpValue(), getRefinementMap(), ReporterInterface::getReporterName(), Reporter::getReporterValueName(), FEProblemBase::getSampler(), JSONFileReader::getScalar(), DisplacedProblem::getScalarVariable(), FEProblemBase::getScalarVariable(), InterfaceQpUserObjectBase::getSideAverageValue(), DisplacedProblem::getStandardVariable(), FEProblemBase::getStandardVariable(), getSubdomainBoundaryIds(), DisplacedProblem::getSystem(), FEProblemBase::getSystem(), Times::getTimeAtIndex(), FEProblemBase::getTimeFromStateArg(), Transient::getTimeIntegratorName(), Times::getTimes(), MultiAppTransfer::getToMultiApp(), MultiAppTransfer::getToMultiAppInfo(), getUniqueCoordSystem(), FEProblemBase::getUserObject(), FEProblemBase::getUserObjectBase(), UserObjectInterface::getUserObjectBaseByName(), UserObjectInterface::getUserObjectName(), NumRelationshipManagers::getValue(), VectorPostprocessorComponent::getValue(), Residual::getValue(), SideAverageValue::getValue(), LineValueSampler::getValue(), FindValueOnLine::getValueAtPoint(), SubProblem::getVariableHelper(), JSONFileReader::getVector(), VectorPostprocessorInterface::getVectorPostprocessorName(), SubProblem::getVectorTag(), SubProblem::getVectorTagID(), DisplacedProblem::getVectorVariable(), FEProblemBase::getVectorVariable(), GhostingAux::GhostingAux(), MultiApp::globalAppToLocal(), MooseParsedVectorFunction::gradient(), Function::gradient(), FEProblemBase::handleException(), Terminator::handleMessage(), MooseVariableBase::hasDoFsOnNodes(), PostprocessorInterface::hasPostprocessor(), PostprocessorInterface::hasPostprocessorByName(), ReporterInterface::hasReporterValue(), ReporterInterface::hasReporterValueByName(), VectorPostprocessorInterface::hasVectorPostprocessor(), VectorPostprocessorInterface::hasVectorPostprocessorByName(), CrankNicolson::init(), CSVTimeSequenceStepper::init(), ExplicitTimeIntegrator::init(), EigenExecutionerBase::init(), IterationAdaptiveDT::init(), Transient::init(), AddAuxVariableAction::init(), Eigenvalue::init(), AddVariableAction::init(), init(), Sampler::init(), FEProblemBase::init(), MultiApp::init(), FEProblemBase::initialAdaptMesh(), NestedDivision::initialize(), TransformedPositions::initialize(), DistributedPositions::initialize(), ReporterPositions::initialize(), FunctorPositions::initialize(), ReporterTimes::initialize(), ElementGroupCentroidPositions::initialize(), FunctorTimes::initialize(), MultiAppCloneReporterTransfer::initialSetup(), SolutionIC::initialSetup(), IntegralPreservingFunctionIC::initialSetup(), MultiAppConservativeTransfer::initialSetup(), PiecewiseLinearBase::initialSetup(), ReferenceResidualProblem::initialSetup(), FullSolveMultiApp::initialSetup(), PiecewiseLinear::initialSetup(), CoarsenedPiecewiseLinear::initialSetup(), SolutionScalarAux::initialSetup(), MultiAppGeneralFieldNearestLocationTransfer::initialSetup(), SolutionAux::initialSetup(), NodalVariableValue::initialSetup(), Axisymmetric2D3DSolutionFunction::initialSetup(), Exodus::initialSetup(), CSV::initialSetup(), MooseParsedFunction::initialSetup(), SolutionUserObject::initialSetup(), FEProblemBase::initialSetup(), SubProblem::initialSetup(), AdvancedOutput::initOutputList(), AdvancedOutput::initShowHideLists(), Function::integral(), InterfaceDiffusiveFluxIntegralTempl< is_ad >::InterfaceDiffusiveFluxIntegralTempl(), InterfaceIntegralVariableValuePostprocessor::InterfaceIntegralVariableValuePostprocessor(), InterfaceKernelTempl< T >::InterfaceKernelTempl(), InterfaceTimeKernel::InterfaceTimeKernel(), MultiAppGeometricInterpolationTransfer::interpolateTargetPoints(), EigenExecutionerBase::inversePowerIteration(), InversePowerMethod::InversePowerMethod(), Sampler::isAdaptiveSamplingCompleted(), isBoundaryFullyExternalToSubdomains(), MooseVariableBase::isNodal(), IterationAdaptiveDT::IterationAdaptiveDT(), LeastSquaresFit::LeastSquaresFit(), LibmeshPartitioner::LibmeshPartitioner(), LibtorchNeuralNetControl::LibtorchNeuralNetControl(), LinearCombinationPostprocessor::LinearCombinationPostprocessor(), LinearNodalConstraint::LinearNodalConstraint(), LineMaterialSamplerBase< Real >::LineMaterialSamplerBase(), LineSearch::lineSearch(), LineValueSampler::LineValueSampler(), MultiAppGeneralFieldTransfer::locatePointReceivers(), LowerBoundNodalKernel::LowerBoundNodalKernel(), MooseVariableFV< Real >::lowerDError(), PNGOutput::makePNG(), ReporterPointMarker::markerSetup(), MassMatrix::MassMatrix(), Material::Material(), MaterialOutputAction::materialOutputHelper(), MaterialRealTensorValueAux::MaterialRealTensorValueAux(), MaterialRealVectorValueAuxTempl< is_ad >::MaterialRealVectorValueAuxTempl(), MaterialStdVectorRealGradientAux::MaterialStdVectorRealGradientAux(), MaterialVectorPostprocessor::MaterialVectorPostprocessor(), Distribution::median(), FunctorRelationshipManager::mesh_reinit(), SubProblem::meshChanged(), MeshDiagnosticsGenerator::MeshDiagnosticsGenerator(), MeshExtruderGenerator::MeshExtruderGenerator(), MeshRepairGenerator::MeshRepairGenerator(), SetupMeshAction::modifyParamsForUseSplit(), MeshMetaDataInterface::mooseErrorInternal(), MooseMesh(), MooseVariableBase::MooseVariableBase(), MooseVariableConstMonomial::MooseVariableConstMonomial(), MoveNodeGenerator::MoveNodeGenerator(), ElementSubdomainModifier::movingBoundaryID(), ElementSubdomainModifier::movingBoundaryName(), MultiApp::MultiApp(), MultiAppPostprocessorTransfer::MultiAppPostprocessorTransfer(), MultiAppTransfer::MultiAppTransfer(), MultiAppUserObjectTransfer::MultiAppUserObjectTransfer(), MultiAppVariableValueSamplePostprocessorTransfer::MultiAppVariableValueSamplePostprocessorTransfer(), NearestNodeDistanceAux::NearestNodeDistanceAux(), NearestNodeValueAux::NearestNodeValueAux(), FEProblemBase::needsPreviousNewtonIteration(), NewmarkBeta::NewmarkBeta(), NodalConstraint::NodalConstraint(), MooseVariableFV< Real >::nodalDofIndex(), MooseVariableFV< Real >::nodalDofIndexNeighbor(), MooseVariableFV< Real >::nodalMatrixTagValue(), NodalPatchRecoveryBase::nodalPatchRecovery(), NodalPatchRecoveryAuxBase::NodalPatchRecoveryAuxBase(), NodalScalarKernel::NodalScalarKernel(), MooseVariableFV< Real >::nodalValueArray(), MooseVariableFV< Real >::nodalValueOldArray(), MooseVariableFV< Real >::nodalValueOlderArray(), NodalVariableValue::NodalVariableValue(), MooseVariableFV< Real >::nodalVectorTagValue(), DistributedRectilinearMeshGenerator::nodeId(), PhysicsBase::nonlinearVariableExists(), MooseVariableFV< Real >::numberOfDofsNeighbor(), NumDOFs::NumDOFs(), NumFailedTimeSteps::NumFailedTimeSteps(), DistributedRectilinearMeshGenerator::numNeighbors(), NumNonlinearIterations::NumNonlinearIterations(), NumVars::NumVars(), Output::onInterval(), FunctorRelationshipManager::operator()(), RelationshipManager::operator==(), XDA::output(), SolutionHistory::output(), Exodus::output(), Output::Output(), AdvancedOutput::outputElementalVariables(), AdvancedOutput::outputInput(), AdvancedOutput::outputNodalVariables(), AdvancedOutput::outputPostprocessors(), AdvancedOutput::outputReporters(), AdvancedOutput::outputScalarVariables(), Exodus::outputSetup(), AdvancedOutput::outputSystemInformation(), Console::outputVectorPostprocessors(), AdvancedOutput::outputVectorPostprocessors(), DistributedRectilinearMeshGenerator::paritionSquarely(), PiecewiseBilinear::parse(), ParsedAux::ParsedAux(), ParsedCurveGenerator::ParsedCurveGenerator(), ParsedGenerateSideset::ParsedGenerateSideset(), ParsedODEKernel::ParsedODEKernel(), ParsedPostprocessor::ParsedPostprocessor(), ParsedSubdomainMeshGenerator::ParsedSubdomainMeshGenerator(), MultiAppConservativeTransfer::performAdjustment(), ExplicitTimeIntegrator::performExplicitSolve(), PetscExternalPartitioner::PetscExternalPartitioner(), MooseVariableFV< Real >::phiLowerSize(), PhysicsBasedPreconditioner::PhysicsBasedPreconditioner(), Executioner::picardSolve(), PIDTransientControl::PIDTransientControl(), PiecewiseBilinear::PiecewiseBilinear(), PiecewiseLinearInterpolationMaterial::PiecewiseLinearInterpolationMaterial(), PiecewiseMulticonstant::PiecewiseMulticonstant(), PiecewiseMultiInterpolation::PiecewiseMultiInterpolation(), PiecewiseTabularBase::PiecewiseTabularBase(), CutMeshByPlaneGenerator::pointPairPlaneInterception(), SolutionUserObject::pointValueGradientWrapper(), SolutionUserObject::pointValueWrapper(), ReporterInterface::possiblyCheckHasReporter(), VectorPostprocessorInterface::possiblyCheckHasVectorPostprocessorByName(), LStableDirk2::postResidual(), LStableDirk3::postResidual(), ImplicitMidpoint::postResidual(), ExplicitTVDRK2::postResidual(), AStableDirk4::postResidual(), LStableDirk4::postResidual(), ExplicitRK2::postResidual(), EigenProblem::postScaleEigenVector(), VariableCondensationPreconditioner::preallocateCondensedJacobian(), ADKernelValueTempl< T >::precomputeQpJacobian(), Predictor::Predictor(), Transient::preExecute(), prepare(), prepared(), FixedPointSolve::printFixedPointConvergenceReason(), PseudoTimestep::PseudoTimestep(), MultiApp::readCommandLineArguments(), PropertyReadFile::readData(), SolutionUserObject::readExodusII(), SolutionUserObject::readXda(), CoarsenBlockGenerator::recursiveCoarsen(), FunctorRelationshipManager::redistribute(), ReferenceResidualProblem::ReferenceResidualProblem(), Sampler::reinit(), EqualValueEmbeddedConstraint::reinitConstraint(), RelativeSolutionDifferenceNorm::RelativeSolutionDifferenceNorm(), RinglebMesh::RinglebMesh(), RinglebMeshGenerator::RinglebMeshGenerator(), PiecewiseMultiInterpolation::sample(), ScalarComponentIC::ScalarComponentIC(), MortarScalarBase::scalarVariable(), DistributedRectilinearMeshGenerator::scaleNodalPositions(), BicubicSplineFunction::secondDerivative(), MooseVariableFV< Real >::secondPhi(), MooseVariableFV< Real >::secondPhiFace(), MooseVariableFV< Real >::secondPhiFaceNeighbor(), MooseVariableFV< Real >::secondPhiNeighbor(), FunctorRelationshipManager::set_mesh(), MooseVariableBase::setActiveTags(), DistributedRectilinearMeshGenerator::setBoundaryNames(), setCoordSystem(), FEProblemBase::setCoupling(), PiecewiseBase::setData(), FileOutput::setFileBaseInternal(), setGeneralAxisymmetricCoordAxes(), FEProblemSolve::setInnerSolve(), MeshGenerator::setMeshProperty(), FVPointValueConstraint::setMyElem(), FEProblemBase::setNonlocalCouplingMatrix(), Sampler::setNumberOfCols(), Sampler::setNumberOfRandomSeeds(), Sampler::setNumberOfRows(), Exodus::setOutputDimensionInExodusWriter(), MultiAppGeneralFieldTransfer::setSolutionVectorValues(), Split::setup(), TransientMultiApp::setupApp(), SetupMeshAction::setupMesh(), TimeSequenceStepperBase::setupSequence(), Transient::setupTimeIntegrator(), TimePeriodBase::setupTimes(), SideAdvectiveFluxIntegralTempl< is_ad >::SideAdvectiveFluxIntegralTempl(), SideDiffusiveFluxIntegralTempl< is_ad, Real >::SideDiffusiveFluxIntegralTempl(), SideSetsFromBoundingBoxGenerator::SideSetsFromBoundingBoxGenerator(), SideSetsFromNormalsGenerator::SideSetsFromNormalsGenerator(), SideSetsFromPointsGenerator::SideSetsFromPointsGenerator(), SingleMatrixPreconditioner::SingleMatrixPreconditioner(), SolutionTimeAdaptiveDT::SolutionTimeAdaptiveDT(), SolutionUserObject::SolutionUserObject(), FullSolveMultiApp::solveStep(), SpatialAverageBase::SpatialAverageBase(), UserObject::spatialPoints(), NearestPointAverage::spatialValue(), NearestPointIntegralVariablePostprocessor::spatialValue(), MeshDivisionFunctorReductionVectorPostprocessor::spatialValue(), UserObject::spatialValue(), SpiralAnnularMesh::SpiralAnnularMesh(), SpiralAnnularMeshGenerator::SpiralAnnularMeshGenerator(), StitchedMesh::StitchedMesh(), MultiAppGeometricInterpolationTransfer::subdomainIDsNode(), Constraint::subdomainSetup(), GeneralUserObject::subdomainSetup(), NodalUserObject::subdomainSetup(), MaterialBase::subdomainSetup(), FEProblemBase::swapBackMaterialsNeighbor(), Console::systemInfoFlags(), Terminator::Terminator(), CutMeshByPlaneGenerator::tet4ElemCutter(), ThreadedGeneralUserObject::threadJoin(), DiscreteElementUserObject::threadJoin(), GeneralUserObject::threadJoin(), Function::timeDerivative(), TimeExtremeValue::TimeExtremeValue(), TimeIntervalTimes::TimeIntervalTimes(), TimePeriodBase::TimePeriodBase(), VectorPostprocessorVisualizationAux::timestepSetup(), MultiAppDofCopyTransfer::transfer(), MultiAppShapeEvaluationTransfer::transferVariable(), TransformedPositions::TransformedPositions(), FEProblemBase::trustUserCouplingMatrix(), MooseVariableScalar::uDot(), MooseVariableScalar::uDotDot(), MooseVariableScalar::uDotDotOld(), FEProblemBase::uDotDotOldRequested(), MooseVariableScalar::uDotOld(), FEProblemBase::uDotOldRequested(), Positions::unrollMultiDPositions(), ScalarKernelBase::uOld(), AuxScalarKernel::uOld(), Checkpoint::updateCheckpointFiles(), EqualValueBoundaryConstraint::updateConstrainedNodes(), SolutionUserObject::updateExodusBracketingTimeIndices(), FEProblemBase::updateMaxQps(), UpperBoundNodalKernel::UpperBoundNodalKernel(), NearestPointAverage::userObjectValue(), NearestPointIntegralVariablePostprocessor::userObjectValue(), BoundingBoxIC::value(), PiecewiseConstantFromCSV::value(), IntegralPreservingFunctionIC::value(), Axisymmetric2D3DSolutionFunction::value(), Function::value(), ValueRangeMarker::ValueRangeMarker(), ValueThresholdMarker::ValueThresholdMarker(), VariableCondensationPreconditioner::VariableCondensationPreconditioner(), MultiAppTransfer::variableIntegrityCheck(), VariableTimeIntegrationAux::VariableTimeIntegrationAux(), AddVariableAction::variableType(), VariableValueVolumeHistogram::VariableValueVolumeHistogram(), VectorMagnitudeFunctorMaterialTempl< is_ad >::VectorMagnitudeFunctorMaterialTempl(), VectorNodalBC::VectorNodalBC(), SubProblem::vectorTagName(), SubProblem::vectorTagType(), MooseParsedGradFunction::vectorValue(), MooseParsedFunction::vectorValue(), Function::vectorValue(), SubProblem::verifyVectorTags(), VTKOutput::VTKOutput(), DOFMapOutput::writeStreamToFile(), and Console::writeStreamToFile().
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inlineinherited |
Emits an error without the prefixing included in mooseError().
Definition at line 50 of file MooseBaseErrorInterface.h.
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inlineinherited |
Definition at line 84 of file MooseBaseErrorInterface.h.
Referenced by SetupRecoverFileBaseAction::act(), AStableDirk4::AStableDirk4(), MeshDiagnosticsGenerator::checkNonConformalMeshFromAdaptivity(), MultiAppGeneralFieldNearestLocationTransfer::evaluateInterpValuesNearestNode(), ExplicitRK2::ExplicitRK2(), ExplicitTVDRK2::ExplicitTVDRK2(), MultiAppTransfer::getPointInTargetAppFrame(), ImplicitMidpoint::ImplicitMidpoint(), PropertyReadFile::initialize(), MultiAppGeneralFieldTransfer::initialSetup(), InversePowerMethod::InversePowerMethod(), LStableDirk2::LStableDirk2(), LStableDirk3::LStableDirk3(), LStableDirk4::LStableDirk4(), PNGOutput::makeMeshFunc(), NonlinearEigen::NonlinearEigen(), MultiAppGeneralFieldTransfer::outputValueConflicts(), ProjectionAux::ProjectionAux(), ReferenceResidualProblem::ReferenceResidualProblem(), FEProblemBase::setRestartFile(), and SymmetryTransformGenerator::SymmetryTransformGenerator().
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inlineinherited |
Emits a warning prefixed with object name and type.
Definition at line 62 of file MooseBaseErrorInterface.h.
Referenced by AddKernelAction::act(), SetupMeshAction::act(), MeshOnlyAction::act(), AddFunctionAction::act(), CommonOutputAction::act(), MaterialOutputAction::act(), DiracKernelBase::addPoint(), BoundaryMarker::BoundaryMarker(), BoundsBase::BoundsBase(), DistributedRectilinearMeshGenerator::buildCube(), MultiAppVariableValueSamplePostprocessorTransfer::cacheElemToPostprocessorData(), CartesianMeshGenerator::CartesianMeshGenerator(), CheckOutputAction::checkConsoleOutput(), MultiAppTransfer::checkMultiAppExecuteOn(), PhysicsBase::checkRequiredTasks(), OversampleOutput::cloneMesh(), GapValueAux::computeValue(), MultiApp::createApp(), MeshDiagnosticsGenerator::diagnosticsLog(), CartesianGridDivision::divisionIndex(), CylindricalGridDivision::divisionIndex(), SphericalGridDivision::divisionIndex(), Postprocessor::evaluateDotWarning(), MeshDivisionFunctorReductionVectorPostprocessor::execute(), ElementQualityChecker::finalize(), FiniteDifferencePreconditioner::FiniteDifferencePreconditioner(), FixedPointSolve::FixedPointSolve(), SubdomainPerElementGenerator::generate(), ParsedGenerateSideset::generate(), MultiAppTransfer::getAppInfo(), FunctorBinnedValuesDivision::getBinIndex(), PointSamplerBase::getLocalElemContainingPoint(), FEProblemBase::getMaterial(), Positions::getNearestPositionIndex(), LineValueSampler::getValue(), Terminator::handleMessage(), ElementGroupCentroidPositions::initialize(), CartesianGridDivision::initialize(), SphericalGridDivision::initialize(), CylindricalGridDivision::initialize(), ReferenceResidualProblem::initialSetup(), MultiAppGeneralFieldNearestLocationTransfer::initialSetup(), MultiAppGeneralFieldTransfer::initialSetup(), FEProblemBase::initialSetup(), AdvancedOutput::initPostprocessorOrVectorPostprocessorLists(), MaterialBase::initStatefulProperties(), LeastSquaresFit::LeastSquaresFit(), IterationAdaptiveDT::limitDTToPostprocessorValue(), MaterialVectorPostprocessor::MaterialVectorPostprocessor(), FEProblemBase::mesh(), MultiAppGeneralFieldTransfer::MultiAppGeneralFieldTransfer(), NewmarkBeta::NewmarkBeta(), NodalPatchRecovery::NodalPatchRecovery(), NonlocalIntegratedBC::NonlocalIntegratedBC(), NonlocalKernel::NonlocalKernel(), Output::Output(), MultiAppGeneralFieldTransfer::outputValueConflicts(), PiecewiseConstantFromCSV::PiecewiseConstantFromCSV(), Executioner::problem(), PropertyReadFile::readData(), TestSourceStepper::rejectStep(), MaterialBase::resetQpProperties(), SecondTimeDerivativeAux::SecondTimeDerivativeAux(), setCoordSystem(), FEProblemBase::sizeZeroes(), TransientMultiApp::solveStep(), Tecplot::Tecplot(), TimeDerivativeAux::TimeDerivativeAux(), Checkpoint::updateCheckpointFiles(), PiecewiseConstantFromCSV::value(), and VariableCondensationPreconditioner::VariableCondensationPreconditioner().
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inlineinherited |
Emits a warning without the prefixing included in mooseWarning().
Definition at line 72 of file MooseBaseErrorInterface.h.
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inlinevirtualinherited |
Get the name of the class.
Reimplemented in MooseVariableBase.
Definition at line 56 of file MooseBase.h.
Referenced by HierarchicalGridPartitioner::_do_partition(), CopyNodalVarsAction::act(), AddElementalFieldAction::act(), AdaptivityAction::act(), AddTimeStepperAction::act(), DeprecatedBlockAction::act(), DisplayGhostingAction::act(), AddVariableAction::act(), AddPeriodicBCAction::act(), MaterialOutputAction::act(), FEProblemBase::addAnyRedistributers(), Executioner::addAttributeReporter(), FEProblemBase::addAuxKernel(), FEProblemBase::addAuxScalarKernel(), DisplacedProblem::addAuxVariable(), FEProblemBase::addBoundaryCondition(), FEProblemBase::addConstraint(), FEProblemBase::addDamper(), FEProblemBase::addDGKernel(), FEProblemBase::addDiracKernel(), FEProblemBase::addDistribution(), FEProblemBase::addFunction(), SubProblem::addFunctor(), FEProblemBase::addFunctorMaterial(), FunctorMaterial::addFunctorProperty(), FunctorMaterial::addFunctorPropertyByBlocks(), FEProblemBase::addFVBC(), FEProblemBase::addFVInitialCondition(), FEProblemBase::addFVInterfaceKernel(), FEProblemBase::addFVKernel(), ADDGKernel::ADDGKernel(), FEProblemBase::addIndicator(), FEProblemBase::addInitialCondition(), FEProblemBase::addInterfaceKernel(), FEProblemBase::addInterfaceMaterial(), FEProblemBase::addKernel(), FEProblemBase::addMarker(), FEProblemBase::addMaterial(), FEProblemBase::addMaterialHelper(), FEProblemBase::addMeshDivision(), MeshGenerator::addMeshSubgenerator(), FEProblemBase::addMultiApp(), FEProblemBase::addNodalKernel(), FEProblemBase::addObject(), SubProblem::addPiecewiseByBlockLambdaFunctor(), FEProblemBase::addPostprocessor(), InitialConditionBase::addPostprocessorDependencyHelper(), UserObject::addPostprocessorDependencyHelper(), FEProblemBase::addPredictor(), CreateDisplacedProblemAction::addProxyRelationshipManagers(), Action::addRelationshipManager(), FEProblemBase::addReporter(), FEProblemBase::addSampler(), FEProblemBase::addScalarKernel(), FEProblemBase::addTimeIntegrator(), FEProblemBase::addTransfer(), FEProblemBase::addUserObject(), InitialConditionBase::addUserObjectDependencyHelper(), UserObject::addUserObjectDependencyHelper(), AuxKernelTempl< Real >::addUserObjectDependencyHelper(), DisplacedProblem::addVariable(), FEProblemBase::addVectorPostprocessor(), UserObject::addVectorPostprocessorDependencyHelper(), FVFluxKernel::adjustRMGhostLayers(), Output::advancedExecuteOn(), AdvancedExtruderGenerator::AdvancedExtruderGenerator(), MultiApp::appPostprocessorValue(), MultiApp::appProblem(), MultiApp::appProblemBase(), MultiApp::appUserObjectBase(), ArrayDGKernel::ArrayDGKernel(), ArrayParsedAux::ArrayParsedAux(), AStableDirk4::AStableDirk4(), AuxKernelTempl< Real >::AuxKernelTempl(), Function::average(), MultiApp::backup(), CoarsenedPiecewiseLinear::buildCoarsenedGrid(), PiecewiseTabularBase::buildFromFile(), MultiAppVariableValueSamplePostprocessorTransfer::cacheElemToPostprocessorData(), ChangeOverFixedPointPostprocessor::ChangeOverFixedPointPostprocessor(), ChangeOverTimePostprocessor::ChangeOverTimePostprocessor(), FEProblemBase::checkDependMaterialsHelper(), FEProblemBase::checkICRestartError(), Material::checkMaterialProperty(), Damper::checkMinDamping(), Coupleable::checkWritableVar(), CompositeFunction::CompositeFunction(), MaterialBase::computeProperties(), FEProblemBase::computeUserObjectByName(), VectorPostprocessorVisualizationAux::computeValue(), MooseBaseParameterInterface::connectControllableParams(), BatchMaterial< Tuple, Output, Input >::construct(), MultiApp::createApp(), AddVariableAction::createInitialConditionAction(), MultiApp::createLocalApp(), MeshGeneratorSystem::createMeshGeneratorOrder(), MaterialBase::declareADProperty(), MeshGenerator::declareMeshesForSubByName(), MeshGenerator::declareNullMeshName(), MaterialBase::declareProperty(), DOFMapOutput::demangle(), DerivativeSumMaterialTempl< is_ad >::DerivativeSumMaterialTempl(), DGKernel::DGKernel(), DGKernelBase::DGKernelBase(), DomainUserObject::DomainUserObject(), DumpObjectsProblem::dumpObjectHelper(), ElementGroupCentroidPositions::ElementGroupCentroidPositions(), ElementValueSampler::ElementValueSampler(), errorIfDistributedMesh(), MooseBaseErrorInterface::errorPrefix(), SolutionUserObject::evalMeshFunction(), SolutionUserObject::evalMeshFunctionGradient(), SolutionUserObject::evalMultiValuedMeshFunction(), SolutionUserObject::evalMultiValuedMeshFunctionGradient(), RestartableDataReporter::execute(), PointValue::execute(), MultiAppNearestNodeTransfer::execute(), Exodus::Exodus(), ExtraIDIntegralVectorPostprocessor::ExtraIDIntegralVectorPostprocessor(), MultiApp::fillPositions(), PointSamplerBase::finalize(), FunctionDT::FunctionDT(), FunctionIC::functionName(), FVFunctionIC::functionName(), FunctorPositions::FunctorPositions(), FunctorSmootherTempl< T >::FunctorSmootherTempl(), FVOneVarDiffusionInterface::FVOneVarDiffusionInterface(), MooseServer::gatherDocumentSymbols(), BoundaryDeletionGenerator::generate(), RenameBlockGenerator::generate(), RenameBoundaryGenerator::generate(), BreakMeshByBlockGenerator::generate(), ParsedSubdomainMeshGenerator::generate(), GeneratedMeshGenerator::generate(), StitchedMeshGenerator::generate(), XYDelaunayGenerator::generate(), ParsedGenerateSideset::generate(), SideSetsAroundSubdomainGenerator::generate(), SubdomainBoundingBoxGenerator::generate(), MeshGenerator::generateInternal(), InterfaceMaterial::getADMaterialProperty(), Material::getADMaterialProperty(), MultiAppTransfer::getAppInfo(), MultiApp::getBoundingBox(), MooseApp::getCheckpointDirectories(), Control::getControllableParameterByName(), Control::getControllableValue(), Control::getControllableValueByName(), UserObject::getDependObjects(), DistributionInterface::getDistribution(), FEProblemBase::getDistribution(), DistributionInterface::getDistributionByName(), ElementUOProvider::getElementalValueLong(), ElementUOProvider::getElementalValueReal(), MultiApp::getExecutioner(), FEProblemBase::getExecutor(), OutputWarehouse::getFileNumbers(), FEProblemBase::getFunction(), SubProblem::getFunctor(), NodalPatchRecovery::getGenericMaterialProperty(), InterfaceMaterial::getGenericMaterialProperty(), Material::getGenericMaterialProperty(), AuxKernelTempl< Real >::getGenericMaterialProperty(), InterfaceMaterial::getGenericNeighborMaterialProperty(), InterfaceMaterial::getGenericNeighborMaterialPropertyByName(), Material::getGenericOptionalMaterialProperty(), MaterialBase::getGenericZeroMaterialProperty(), BatchMaterial< Tuple, Output, Input >::getIndex(), SolutionUserObject::getLocalVarIndex(), Marker::getMarkerValue(), Material::getMaterial(), FEProblemBase::getMaterial(), Material::getMaterialByName(), NodalPatchRecovery::getMaterialProperty(), InterfaceMaterial::getMaterialProperty(), Material::getMaterialProperty(), AuxKernelTempl< Real >::getMaterialProperty(), SubProblem::getMaterialPropertyBlockNames(), SubProblem::getMaterialPropertyBoundaryNames(), NodalPatchRecovery::getMaterialPropertyOld(), InterfaceMaterial::getMaterialPropertyOld(), Material::getMaterialPropertyOld(), AuxKernelTempl< Real >::getMaterialPropertyOld(), NodalPatchRecovery::getMaterialPropertyOlder(), InterfaceMaterial::getMaterialPropertyOlder(), Material::getMaterialPropertyOlder(), AuxKernelTempl< Real >::getMaterialPropertyOlder(), MeshGenerator::getMesh(), FEProblemBase::getMeshDivision(), MeshGenerator::getMeshesByName(), MeshGenerator::getMeshGeneratorNameFromParam(), MeshGenerator::getMeshGeneratorNamesFromParam(), MultiAppTransfer::getMultiApp(), InterfaceMaterial::getNeighborADMaterialProperty(), InterfaceMaterial::getNeighborMaterialProperty(), InterfaceMaterial::getNeighborMaterialPropertyOld(), InterfaceMaterial::getNeighborMaterialPropertyOlder(), MooseServer::getObjectParameters(), Material::getOptionalADMaterialProperty(), Material::getOptionalMaterialProperty(), Material::getOptionalMaterialPropertyOld(), Material::getOptionalMaterialPropertyOlder(), FEProblemBase::getPositionsObject(), FEProblemBase::getPostprocessorValueByName(), ReporterData::getReporterInfo(), FEProblemBase::getSampler(), Transient::getTimeStepperName(), ProjectedStatefulMaterialStorageAction::getTypeEnum(), FEProblemBase::getUserObject(), FEProblemBase::getUserObjectBase(), Terminator::handleMessage(), FEProblemBase::hasFunction(), SubProblem::hasFunctor(), SubProblem::hasFunctorWithType(), AdvancedOutput::hasOutputHelper(), FEProblemBase::hasPostprocessor(), FEProblemBase::hasPostprocessorValueByName(), FEProblemBase::hasUserObject(), IterationAdaptiveDT::init(), AdvancedOutput::init(), FEProblemBase::init(), AdvancedOutput::initExecutionTypes(), AttribName::initFrom(), NestedDivision::initialize(), TransformedPositions::initialize(), SolutionScalarAux::initialSetup(), MultiAppProjectionTransfer::initialSetup(), NodalVariableValue::initialSetup(), SolutionUserObject::initialSetup(), AdvancedOutput::initOutputList(), AdvancedOutput::initPostprocessorOrVectorPostprocessorLists(), MaterialBase::initStatefulProperties(), Function::integral(), InterfaceKernelTempl< T >::InterfaceKernelTempl(), MeshGenerator::isChildMeshGenerator(), MeshGenerator::isNullMeshName(), MeshGenerator::isParentMeshGenerator(), LinearCombinationFunction::LinearCombinationFunction(), FEProblemBase::logAdd(), Marker::Marker(), MatDiffusionBase< Real >::MatDiffusionBase(), Material::Material(), MaterialDerivativeTestKernelBase< Real >::MaterialDerivativeTestKernelBase(), MaterialVectorPostprocessor::MaterialVectorPostprocessor(), Distribution::median(), MemoryUsageReporter::MemoryUsageReporter(), MeshGenerator::meshPropertyPrefix(), MooseVariableInterface< Real >::MooseVariableInterface(), MultiAppGeneralFieldTransfer::MultiAppGeneralFieldTransfer(), MultiAppUserObjectTransfer::MultiAppUserObjectTransfer(), NodalPatchRecoveryAuxBase::NodalPatchRecoveryAuxBase(), NodalValueSampler::NodalValueSampler(), PhysicsBase::nonlinearVariableExists(), Registry::objData(), MooseBaseParameterInterface::objectErrorPrefix(), MeshGenerator::Comparator::operator()(), ProgressOutput::output(), DOFMapOutput::output(), Output::Output(), AdvancedOutput::outputElementalVariables(), ConsoleUtils::outputExecutionInformation(), AdvancedOutput::outputInput(), AdvancedOutput::outputNodalVariables(), Nemesis::outputPostprocessors(), Exodus::outputPostprocessors(), AdvancedOutput::outputPostprocessors(), TableOutput::outputReporter(), AdvancedOutput::outputReporters(), AdvancedOutput::outputScalarVariables(), AdvancedOutput::outputSystemInformation(), AdvancedOutput::outputVectorPostprocessors(), ParsedAux::ParsedAux(), ParsedCurveGenerator::ParsedCurveGenerator(), ParsedGenerateSideset::ParsedGenerateSideset(), ParsedODEKernel::ParsedODEKernel(), ParsedSubdomainMeshGenerator::ParsedSubdomainMeshGenerator(), PiecewiseBilinear::PiecewiseBilinear(), PiecewiseByBlockFunctorMaterialTempl< T >::PiecewiseByBlockFunctorMaterialTempl(), PointVariableSamplerBase::PointVariableSamplerBase(), PhysicsBase::prefix(), MultiApp::readCommandLineArguments(), Receiver::Receiver(), Executor::Result::record(), Registry::registerObjectsTo(), FEProblemBase::registerRandomInterface(), GlobalParamsAction::remove(), MaterialBase::resetQpProperties(), MultiApp::restore(), ScalarComponentIC::ScalarComponentIC(), MultiApp::setAppOutputFileBase(), setBoundaryName(), Control::setControllableValue(), Control::setControllableValueByName(), GlobalParamsAction::setDoubleIndexParam(), OutputWarehouse::setFileNumbers(), GlobalParamsAction::setParam(), FEProblemBase::setPostprocessorValueByName(), GlobalParamsAction::setScalarParam(), setSubdomainName(), GlobalParamsAction::setTripleIndexParam(), Split::setup(), TransientMultiApp::setupApp(), GlobalParamsAction::setVectorParam(), FullSolveMultiApp::showStatusMessage(), SideSetExtruderGenerator::SideSetExtruderGenerator(), SideValueSampler::SideValueSampler(), TransientMultiApp::solveStep(), UserObject::spatialValue(), StitchedMesh::StitchedMesh(), SubProblem::storeBoundaryDelayedCheckMatProp(), SubProblem::storeBoundaryMatPropName(), SubProblem::storeBoundaryZeroMatProp(), SubProblem::storeSubdomainDelayedCheckMatProp(), SubProblem::storeSubdomainMatPropName(), SubProblem::storeSubdomainZeroMatProp(), MaterialBase::subdomainSetup(), TaggingInterface::TaggingInterface(), VectorPostprocessorVisualizationAux::timestepSetup(), MultiAppDofCopyTransfer::transfer(), TransientMultiApp::TransientMultiApp(), MooseServer::traverseParseTreeAndFillSymbols(), MooseBase::typeAndName(), MooseBaseParameterInterface::uniqueParameterName(), FVFluxBC::uOnGhost(), FVFluxBC::uOnUSub(), UserObject::UserObject(), UserObjectInterface::userObjectName(), MultiAppTransfer::variableIntegrityCheck(), VectorMagnitudeFunctorMaterialTempl< is_ad >::VectorMagnitudeFunctorMaterialTempl(), AdvancedOutput::wantOutput(), Coupleable::writableCoupledValue(), and Coupleable::writableVariable().
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Whether or not we want to ghost ghosted boundaries.
Definition at line 601 of file MooseMesh.h.
Referenced by DistributedRectilinearMeshGenerator::generate().
void MooseMesh::needsPrepareForUse | ( | ) |
If this method is called, we will call libMesh's prepare_for_use method when we call Moose's prepare method.
This should only be set when the mesh structure is changed by MeshGenerators (i.e. Element deletion).
Definition at line 2915 of file MooseMesh.C.
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Set whether we need to delete remote elements.
Definition at line 1057 of file MooseMesh.h.
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Whether we need to delete remote elements.
Definition at line 1062 of file MooseMesh.h.
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Definition at line 2831 of file MooseMesh.C.
Referenced by PropertyReadFile::getElementData(), and PropertyReadFile::readData().
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accessors for the FaceInfo objects
Definition at line 1125 of file MooseMesh.h.
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Calls n_nodes/elem() on the underlying libMesh mesh object.
Definition at line 2825 of file MooseMesh.C.
Referenced by PropertyReadFile::getNodeData(), and PropertyReadFile::readData().
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Various accessors (pointers/references) for Node "i".
If the requested node is a remote node on a distributed mesh, only the query accessors are valid to call, and they return NULL.
Definition at line 622 of file MooseMesh.C.
Referenced by addUniqueNode(), GeneratedMesh::buildMesh(), buildPeriodicNodeMap(), cacheInfo(), detectOrthogonalDimRanges(), getNodeBlockIds(), isSemiLocal(), and updateActiveSemiLocalNodeRange().
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Definition at line 629 of file MooseMesh.C.
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Definition at line 650 of file MooseMesh.C.
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Definition at line 656 of file MooseMesh.C.
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Definition at line 636 of file MooseMesh.C.
Referenced by NonlinearSystemBase::constraintJacobians(), NonlinearSystemBase::constraintResiduals(), NearestNodeLocator::findNodes(), NonlinearSystemBase::getNodeDofs(), node(), nodePtr(), nodeRef(), ResetDisplacedMeshThread::onNode(), UpdateDisplacedMeshThread::onNode(), NearestNodeThread::operator()(), SecondaryNeighborhoodThread::operator()(), PenetrationThread::operator()(), NonlinearSystemBase::overwriteNodeFace(), FEProblemBase::reinitNode(), FEProblemBase::reinitNodeFace(), NonlinearSystemBase::setConstraintSecondaryValues(), EqualValueBoundaryConstraint::updateConstrainedNodes(), and NearestNodeLocator::updatePatch().
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Definition at line 644 of file MooseMesh.C.
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Definition at line 2120 of file MooseMesh.h.
const std::map< dof_id_type, std::vector< dof_id_type > > & MooseMesh::nodeToActiveSemilocalElemMap | ( | ) |
If not already created, creates a map from every node to all active semilocal elements to which they are connected.
Semilocal elements include local elements and elements that share at least one node with a local element.
Definition at line 1008 of file MooseMesh.C.
Referenced by FEProblemBase::initialSetup().
const std::map< dof_id_type, std::vector< dof_id_type > > & MooseMesh::nodeToElemMap | ( | ) |
If not already created, creates a map from every node to all elements to which they are connected.
Definition at line 980 of file MooseMesh.C.
Referenced by NodalPatchRecovery::compute(), ProjectionAux::computeValue(), NodalPatchRecoveryAuxBase::computeValue(), PenetrationLocator::detectPenetration(), DMMooseGetEmbedding_Private(), ProjectionAux::elemOnNodeVariableIsDefinedOn(), NonlinearSystemBase::findImplicitGeometricCouplingEntries(), NearestNodeLocator::findNodes(), ActivateElementsUserObjectBase::isNewlyActivated(), LinearNodalConstraint::LinearNodalConstraint(), GhostHigherDLowerDPointNeighbors::operator()(), EqualValueBoundaryConstraint::updateConstrainedNodes(), RandomData::updateGenerators(), and NearestNodeLocator::updatePatch().
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A descriptive prefix for errors for an object.
Definition at line 58 of file MooseBaseParameterInterface.C.
Referenced by MooseBaseParameterInterface::paramErrorMsg().
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Declares a callback function that is executed at the conclusion of meshChanged().
Ther user can implement actions required after changing the mesh here.
Definition at line 710 of file MooseMesh.C.
Referenced by meshChanged().
MooseMesh::operator const libMesh::MeshBase & | ( | ) | const |
Definition at line 3189 of file MooseMesh.C.
MooseMesh::operator libMesh::MeshBase & | ( | ) |
Implicit conversion operator from MooseMesh -> libMesh::MeshBase.
Definition at line 3187 of file MooseMesh.C.
MooseMesh::elem_info_iterator MooseMesh::ownedElemInfoBegin | ( | ) |
Iterators to owned faceInfo objects.
These faceInfo-s are required for the face loops and to filter out the faceInfo-s that are not owned by this processor in case we have a distributed mesh and we included FaceInfo objects that are on processor boundaries
Definition at line 1310 of file MooseMesh.C.
Referenced by FEProblemBase::projectSolution().
MooseMesh::elem_info_iterator MooseMesh::ownedElemInfoEnd | ( | ) |
Definition at line 1318 of file MooseMesh.C.
Referenced by FEProblemBase::projectSolution().
MooseMesh::face_info_iterator MooseMesh::ownedFaceInfoBegin | ( | ) |
Iterators to owned faceInfo objects.
These faceInfo-s are required for the face loops and to filter out the faceInfo-s that are not owned by this processor in case we have a distributed mesh and we included FaceInfo objects that are on processor boundaries
Definition at line 1292 of file MooseMesh.C.
Referenced by NonlinearSystemBase::computeJacobianInternal(), NonlinearSystemBase::computeResidualAndJacobianInternal(), and NonlinearSystemBase::computeResidualInternal().
MooseMesh::face_info_iterator MooseMesh::ownedFaceInfoEnd | ( | ) |
Definition at line 1301 of file MooseMesh.C.
Referenced by NonlinearSystemBase::computeJacobianInternal(), NonlinearSystemBase::computeResidualAndJacobianInternal(), and NonlinearSystemBase::computeResidualInternal().
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Emits an error prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message.
If this object's parameters were not created directly by the Parser, then this function falls back to the normal behavior of mooseError - only printing a message using the given args.
Definition at line 243 of file MooseBaseParameterInterface.h.
Referenced by HierarchicalGridPartitioner::_do_partition(), SetupDebugAction::act(), ADConservativeAdvectionBC::ADConservativeAdvectionBC(), DiffusionCG::addFEKernels(), DiffusionFV::addFVKernels(), ADDGKernel::ADDGKernel(), DiffusionCG::addNonlinearVariables(), ReporterPointSource::addPoints(), ADIntegratedBCTempl< T >::ADIntegratedBCTempl(), ADKernelTempl< T >::ADKernelTempl(), ADNodalKernel::ADNodalKernel(), ADPenaltyPeriodicSegmentalConstraint::ADPenaltyPeriodicSegmentalConstraint(), ADPeriodicSegmentalConstraint::ADPeriodicSegmentalConstraint(), AdvancedExtruderGenerator::AdvancedExtruderGenerator(), AdvectiveFluxAux::AdvectiveFluxAux(), ADVectorFunctionDirichletBC::ADVectorFunctionDirichletBC(), AnnularMesh::AnnularMesh(), AnnularMeshGenerator::AnnularMeshGenerator(), ArrayBodyForce::ArrayBodyForce(), ArrayDGKernel::ArrayDGKernel(), ArrayDGLowerDKernel::ArrayDGLowerDKernel(), ArrayDirichletBC::ArrayDirichletBC(), ArrayHFEMDirichletBC::ArrayHFEMDirichletBC(), ArrayIntegratedBC::ArrayIntegratedBC(), ArrayKernel::ArrayKernel(), ArrayLowerDIntegratedBC::ArrayLowerDIntegratedBC(), ArrayParsedAux::ArrayParsedAux(), ArrayPenaltyDirichletBC::ArrayPenaltyDirichletBC(), ArrayVacuumBC::ArrayVacuumBC(), AuxKernelTempl< Real >::AuxKernelTempl(), BlockDeletionGenerator::BlockDeletionGenerator(), BlockWeightedPartitioner::BlockWeightedPartitioner(), BoundsBase::BoundsBase(), BreakMeshByBlockGenerator::BreakMeshByBlockGenerator(), BuildArrayVariableAux::BuildArrayVariableAux(), PiecewiseTabularBase::buildFromFile(), CartesianGridDivision::CartesianGridDivision(), UserObjectInterface::castUserObject(), checkComponent(), MeshGenerator::checkGetMesh(), PostprocessorInterface::checkParam(), PhysicsBase::checkParamsBothSetOrNotSet(), Checkpoint::Checkpoint(), PhysicsBase::checkSecondParamSetOnlyIfFirstOneTrue(), Coupleable::checkVar(), MultiAppTransfer::checkVariable(), PhysicsBase::checkVectorParamsSameLength(), CircularBoundaryCorrectionGenerator::CircularBoundaryCorrectionGenerator(), CircularBoundaryCorrectionGenerator::circularCenterCalculator(), MultiAppGeneralFieldTransfer::closestToPosition(), CoarsenBlockGenerator::CoarsenBlockGenerator(), CombinerGenerator::CombinerGenerator(), CompositionDT::CompositionDT(), ConcentricCircleMeshGenerator::ConcentricCircleMeshGenerator(), LibtorchNeuralNetControl::conditionalParameterError(), ConstantVectorPostprocessor::ConstantVectorPostprocessor(), ContainsPointAux::ContainsPointAux(), CopyValueAux::CopyValueAux(), Coupleable::Coupleable(), CoupledForceTempl< is_ad >::CoupledForceTempl(), CoupledValueFunctionMaterialTempl< is_ad >::CoupledValueFunctionMaterialTempl(), MultiApp::createApp(), MeshGeneratorSystem::createMeshGenerator(), CylindricalGridDivision::CylindricalGridDivision(), ConstantReporter::declareConstantReporterValues(), AccumulateReporter::declareLateValues(), DGKernel::DGKernel(), DGKernelBase::DGKernelBase(), DGLowerDKernel::DGLowerDKernel(), DiffusionFluxAux::DiffusionFluxAux(), DomainUserObject::DomainUserObject(), EigenProblem::EigenProblem(), Eigenvalue::Eigenvalue(), ElementExtremeFunctorValueTempl< is_ad >::ElementExtremeFunctorValueTempl(), ElementExtremeValue::ElementExtremeValue(), ElementGroupCentroidPositions::ElementGroupCentroidPositions(), ElementLengthAux::ElementLengthAux(), ElementLpNormAux::ElementLpNormAux(), ElementValueSampler::ElementValueSampler(), ElementVectorL2Error::ElementVectorL2Error(), ReporterPointSource::errorCheck(), MultiAppNearestNodeTransfer::execute(), MultiAppUserObjectTransfer::execute(), ExtraElementIDAux::ExtraElementIDAux(), ExtraElementIntegerDivision::ExtraElementIntegerDivision(), FEProblemSolve::FEProblemSolve(), FillBetweenCurvesGenerator::FillBetweenCurvesGenerator(), FillBetweenSidesetsGenerator::FillBetweenSidesetsGenerator(), ReporterPointSource::fillPoint(), SpatialUserObjectVectorPostprocessor::fillPoints(), CombinerGenerator::fillPositions(), MultiApp::fillPositions(), InternalSideIndicator::finalize(), FixedPointSolve::FixedPointSolve(), ForcingFunctionAux::ForcingFunctionAux(), FunctionArrayAux::FunctionArrayAux(), FunctionValuePostprocessor::FunctionValuePostprocessor(), FunctorADConverterTempl< T >::FunctorADConverterTempl(), FunctorAux::FunctorAux(), FunctorBinnedValuesDivision::FunctorBinnedValuesDivision(), FunctorElementalGradientAuxTempl< is_ad >::FunctorElementalGradientAuxTempl(), FunctorPositions::FunctorPositions(), FunctorVectorElementalAuxTempl< is_ad >::FunctorVectorElementalAuxTempl(), FVFluxBC::FVFluxBC(), FVInterfaceKernel::FVInterfaceKernel(), FVOneVarDiffusionInterface::FVOneVarDiffusionInterface(), FVTwoVarContinuityConstraint::FVTwoVarContinuityConstraint(), BoundaryDeletionGenerator::generate(), ElementsToTetrahedronsConverter::generate(), ExtraNodesetGenerator::generate(), FillBetweenCurvesGenerator::generate(), FillBetweenSidesetsGenerator::generate(), PlaneIDMeshGenerator::generate(), RenameBlockGenerator::generate(), RenameBoundaryGenerator::generate(), AddMetaDataGenerator::generate(), BlockToMeshConverterGenerator::generate(), BreakBoundaryOnSubdomainGenerator::generate(), RefineSidesetGenerator::generate(), SideSetsBetweenSubdomainsGenerator::generate(), FlipSidesetGenerator::generate(), BlockDeletionGenerator::generate(), BreakMeshByBlockGenerator::generate(), CoarsenBlockGenerator::generate(), CutMeshByPlaneGenerator::generate(), GeneratedMeshGenerator::generate(), ParsedSubdomainMeshGenerator::generate(), RefineBlockGenerator::generate(), CombinerGenerator::generate(), MeshCollectionGenerator::generate(), MeshExtruderGenerator::generate(), ParsedCurveGenerator::generate(), BreakMeshByElementGenerator::generate(), SideSetsFromBoundingBoxGenerator::generate(), StackGenerator::generate(), StitchedMeshGenerator::generate(), AdvancedExtruderGenerator::generate(), CircularBoundaryCorrectionGenerator::generate(), XYDelaunayGenerator::generate(), XYMeshLineCutter::generate(), ParsedGenerateSideset::generate(), SideSetsAroundSubdomainGenerator::generate(), PatternedMeshGenerator::generate(), SubdomainBoundingBoxGenerator::generate(), GenericFunctorGradientMaterialTempl< is_ad >::GenericFunctorGradientMaterialTempl(), GenericFunctorMaterialTempl< is_ad >::GenericFunctorMaterialTempl(), GenericVectorFunctorMaterialTempl< is_ad >::GenericVectorFunctorMaterialTempl(), PropertyReadFile::getBlockData(), PropertyReadFile::getData(), Sampler::getGlobalSamples(), MultiAppNearestNodeTransfer::getLocalEntitiesAndComponents(), Sampler::getLocalSamples(), MeshGenerator::getMeshGeneratorNameFromParam(), MeshGenerator::getMeshGeneratorNamesFromParam(), Sampler::getNextLocalRow(), PostprocessorInterface::getPostprocessorNameInternal(), PostprocessorInterface::getPostprocessorValueInternal(), MultiAppNearestNodeTransfer::getTargetLocalNodes(), UserObjectInterface::getUserObjectBase(), UserObjectInterface::getUserObjectName(), HFEMDirichletBC::HFEMDirichletBC(), MultiApp::init(), DistributedPositions::initialize(), BlockWeightedPartitioner::initialize(), BlockRestrictable::initializeBlockRestrictable(), BoundaryRestrictable::initializeBoundaryRestrictable(), PhysicsBase::initializePhysics(), MultiAppCloneReporterTransfer::initialSetup(), ReferenceResidualProblem::initialSetup(), MultiAppVariableValueSamplePostprocessorTransfer::initialSetup(), MultiAppGeneralFieldNearestLocationTransfer::initialSetup(), MultiAppDofCopyTransfer::initialSetup(), HistogramVectorPostprocessor::initialSetup(), PiecewiseConstantFromCSV::initialSetup(), LibtorchControlValuePostprocessor::initialSetup(), MultiAppGeneralFieldTransfer::initialSetup(), AddMetaDataGenerator::inputChecker(), IntegratedBC::IntegratedBC(), InterfaceDiffusiveFluxIntegralTempl< is_ad >::InterfaceDiffusiveFluxIntegralTempl(), InterfaceValueUserObjectAux::InterfaceValueUserObjectAux(), InterpolatedStatefulMaterialTempl< T >::InterpolatedStatefulMaterialTempl(), InversePowerMethod::InversePowerMethod(), IterationAdaptiveDT::IterationAdaptiveDT(), MultiApp::keepSolutionDuringRestore(), Kernel::Kernel(), LibtorchNeuralNetControl::LibtorchNeuralNetControl(), LinearCombinationFunction::LinearCombinationFunction(), LowerDIntegratedBC::LowerDIntegratedBC(), PNGOutput::makeMeshFunc(), MatCoupledForce::MatCoupledForce(), MaterialADConverterTempl< T >::MaterialADConverterTempl(), MaterialFunctorConverterTempl< T >::MaterialFunctorConverterTempl(), PatternedMeshGenerator::mergeSubdomainNameMaps(), MeshCollectionGenerator::MeshCollectionGenerator(), MeshDiagnosticsGenerator::MeshDiagnosticsGenerator(), MeshDivisionAux::MeshDivisionAux(), MeshGenerator::MeshGenerator(), MoosePreconditioner::MoosePreconditioner(), MooseVariableBase::MooseVariableBase(), MortarConstraintBase::MortarConstraintBase(), MortarNodalAuxKernelTempl< ComputeValueType >::MortarNodalAuxKernelTempl(), MultiApp::moveApp(), MoveNodeGenerator::MoveNodeGenerator(), MultiApp::MultiApp(), MultiAppCloneReporterTransfer::MultiAppCloneReporterTransfer(), MultiAppGeneralFieldNearestLocationTransfer::MultiAppGeneralFieldNearestLocationTransfer(), MultiAppGeneralFieldShapeEvaluationTransfer::MultiAppGeneralFieldShapeEvaluationTransfer(), MultiAppGeneralFieldTransfer::MultiAppGeneralFieldTransfer(), MultiAppGeneralFieldUserObjectTransfer::MultiAppGeneralFieldUserObjectTransfer(), MultiAppGeometricInterpolationTransfer::MultiAppGeometricInterpolationTransfer(), MultiAppNearestNodeTransfer::MultiAppNearestNodeTransfer(), MultiAppPostprocessorInterpolationTransfer::MultiAppPostprocessorInterpolationTransfer(), MultiAppPostprocessorToAuxScalarTransfer::MultiAppPostprocessorToAuxScalarTransfer(), MultiAppPostprocessorTransfer::MultiAppPostprocessorTransfer(), MultiAppProjectionTransfer::MultiAppProjectionTransfer(), MultiAppReporterTransfer::MultiAppReporterTransfer(), MultiAppScalarToAuxScalarTransfer::MultiAppScalarToAuxScalarTransfer(), MultiAppShapeEvaluationTransfer::MultiAppShapeEvaluationTransfer(), MultiAppTransfer::MultiAppTransfer(), MultiAppUserObjectTransfer::MultiAppUserObjectTransfer(), MultiAppVariableValueSamplePostprocessorTransfer::MultiAppVariableValueSamplePostprocessorTransfer(), MultiAppVariableValueSampleTransfer::MultiAppVariableValueSampleTransfer(), MultiAppVectorPostprocessorTransfer::MultiAppVectorPostprocessorTransfer(), NestedDivision::NestedDivision(), NodalBC::NodalBC(), NodalEqualValueConstraint::NodalEqualValueConstraint(), NodalKernel::NodalKernel(), NodalPatchRecoveryAux::NodalPatchRecoveryAux(), NodalValueSampler::NodalValueSampler(), Output::Output(), ParsedCurveGenerator::ParsedCurveGenerator(), ParsedElementDeletionGenerator::ParsedElementDeletionGenerator(), ParsedFunctorMaterialTempl< is_ad >::ParsedFunctorMaterialTempl(), ParsedGenerateSideset::ParsedGenerateSideset(), ParsedNodeTransformGenerator::ParsedNodeTransformGenerator(), PatchMeshGenerator::PatchMeshGenerator(), PatternedMeshGenerator::PatternedMeshGenerator(), PenaltyPeriodicSegmentalConstraint::PenaltyPeriodicSegmentalConstraint(), PeriodicSegmentalConstraint::PeriodicSegmentalConstraint(), PIDTransientControl::PIDTransientControl(), PlaneDeletionGenerator::PlaneDeletionGenerator(), PlaneIDMeshGenerator::PlaneIDMeshGenerator(), PointwiseRenormalizeVector::PointwiseRenormalizeVector(), PolyLineMeshGenerator::PolyLineMeshGenerator(), ReporterInterface::possiblyCheckHasReporter(), VectorPostprocessorInterface::possiblyCheckHasVectorPostprocessor(), LibmeshPartitioner::prepareBlocksForSubdomainPartitioner(), ProjectedMaterialPropertyNodalPatchRecoveryAux::ProjectedMaterialPropertyNodalPatchRecoveryAux(), PropertyReadFile::PropertyReadFile(), RandomIC::RandomIC(), MultiApp::readCommandLineArguments(), PropertyReadFile::readData(), SolutionUserObject::readXda(), ReferenceResidualProblem::ReferenceResidualProblem(), RefineBlockGenerator::RefineBlockGenerator(), RefineSidesetGenerator::RefineSidesetGenerator(), RenameBlockGenerator::RenameBlockGenerator(), RenameBoundaryGenerator::RenameBoundaryGenerator(), ReporterPointSource::ReporterPointSource(), SecondTimeDerivativeAux::SecondTimeDerivativeAux(), setPartitioner(), TimeSequenceStepperBase::setupSequence(), SingleRankPartitioner::SingleRankPartitioner(), SphericalGridDivision::SphericalGridDivision(), SymmetryTransformGenerator::SymmetryTransformGenerator(), Terminator::Terminator(), TimeDerivativeAux::TimeDerivativeAux(), Transfer::Transfer(), TransformGenerator::TransformGenerator(), TransientMultiApp::TransientMultiApp(), ParsedCurveGenerator::tSectionSpaceDefiner(), UniqueExtraIDMeshGenerator::UniqueExtraIDMeshGenerator(), UserObject::UserObject(), VariableCondensationPreconditioner::VariableCondensationPreconditioner(), VectorBodyForce::VectorBodyForce(), VectorFunctionDirichletBC::VectorFunctionDirichletBC(), VectorFunctionIC::VectorFunctionIC(), VolumeAux::VolumeAux(), XYDelaunayGenerator::XYDelaunayGenerator(), and XYMeshLineCutter::XYMeshLineCutter().
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Get the parameters of the object.
Definition at line 63 of file MooseBaseParameterInterface.h.
Referenced by SetupDebugAction::act(), FEProblemBase::addAuxKernel(), FEProblemBase::addAuxScalarKernel(), DisplacedProblem::addAuxVariable(), FEProblemBase::addBoundaryCondition(), FEProblemBase::addConstraint(), FEProblemBase::addDamper(), FEProblemBase::addDGKernel(), FEProblemBase::addDiracKernel(), FEProblemBase::addDistribution(), FEProblemBase::addFunction(), FEProblemBase::addFunctorMaterial(), FEProblemBase::addFVBC(), FEProblemBase::addFVInitialCondition(), FEProblemBase::addFVInterfaceKernel(), FEProblemBase::addFVKernel(), FEProblemBase::addIndicator(), FEProblemBase::addInitialCondition(), FEProblemBase::addInterfaceKernel(), FEProblemBase::addInterfaceMaterial(), FEProblemBase::addKernel(), FEProblem::addLineSearch(), FEProblemBase::addMarker(), FEProblemBase::addMaterial(), FEProblemBase::addMaterialHelper(), FEProblemBase::addMeshDivision(), FEProblemBase::addMultiApp(), FEProblemBase::addNodalKernel(), FEProblemBase::addObject(), FEProblemBase::addObjectParamsHelper(), FEProblemBase::addOutput(), FEProblemBase::addPostprocessor(), FEProblemBase::addPredictor(), FEProblemBase::addReporter(), FEProblemBase::addSampler(), FEProblemBase::addScalarKernel(), FEProblemBase::addTimeIntegrator(), FEProblemBase::addTransfer(), FEProblemBase::addUserObject(), DisplacedProblem::addVariable(), FEProblemBase::addVectorPostprocessor(), ADPiecewiseLinearInterpolationMaterial::ADPiecewiseLinearInterpolationMaterial(), AdvancedOutput::AdvancedOutput(), ADVectorFunctionDirichletBC::ADVectorFunctionDirichletBC(), AnnularMesh::AnnularMesh(), AnnularMeshGenerator::AnnularMeshGenerator(), assemble_l2(), Moose::assemble_matrix(), PhysicsBase::assertParamDefined(), AuxKernelTempl< Real >::AuxKernelTempl(), AuxScalarKernel::AuxScalarKernel(), BoundsBase::BoundsBase(), buildTypedMesh(), UserObjectInterface::castUserObject(), PostprocessorInterface::checkParam(), PhysicsBase::checkSecondParamSetOnlyIfFirstOneTrue(), LibmeshPartitioner::clone(), OversampleOutput::cloneMesh(), Moose::compute_bounds(), Moose::compute_jacobian(), Moose::compute_nearnullspace(), Moose::compute_nullspace(), Moose::compute_postcheck(), Moose::compute_transpose_nullspace(), LibtorchNeuralNetControl::conditionalParameterError(), Console::Console(), MultiApp::createApp(), Postprocessor::declareValue(), DumpObjectsProblem::deduceNecessaryParameters(), DumpObjectsProblem::dumpObjectHelper(), EigenProblem::EigenProblem(), Eigenvalue::Eigenvalue(), Executor::Executor(), Exodus::Exodus(), FEProblem::FEProblem(), FEProblemBase::FEProblemBase(), FixedPointSolve::FixedPointSolve(), FunctorSmootherTempl< T >::FunctorSmootherTempl(), GapValueAux::GapValueAux(), ParsedSubdomainMeshGenerator::generate(), ParsedGenerateSideset::generate(), MooseBaseParameterInterface::getCheckedPointerParam(), ExecutorInterface::getExecutor(), Material::getMaterial(), ReporterInterface::getReporterName(), Reporter::getReporterValueName(), UserObjectInterface::getUserObjectName(), VectorPostprocessorInterface::getVectorPostprocessorName(), GhostingUserObject::GhostingUserObject(), AttribSystem::initFrom(), AttribDisplaced::initFrom(), BlockRestrictable::initializeBlockRestrictable(), FullSolveMultiApp::initialSetup(), FEProblemBase::initNullSpaceVectors(), InterfaceDiffusiveFluxIntegralTempl< is_ad >::InterfaceDiffusiveFluxIntegralTempl(), InterfaceIntegralVariableValuePostprocessor::InterfaceIntegralVariableValuePostprocessor(), InterfaceKernelTempl< T >::InterfaceKernelTempl(), isValid(), IterationAdaptiveDT::IterationAdaptiveDT(), LibtorchNeuralNetControl::LibtorchNeuralNetControl(), MaterialVectorPostprocessor::MaterialVectorPostprocessor(), MooseVariableInterface< Real >::MooseVariableInterface(), MultiApp::MultiApp(), MultiAppGeneralFieldTransfer::MultiAppGeneralFieldTransfer(), MultiAppGeneralFieldUserObjectTransfer::MultiAppGeneralFieldUserObjectTransfer(), MultiAppTransfer::MultiAppTransfer(), MultiAppVariableValueSamplePostprocessorTransfer::MultiAppVariableValueSamplePostprocessorTransfer(), NodeFaceConstraint::NodeFaceConstraint(), OverlayMeshGenerator::OverlayMeshGenerator(), PatchMeshGenerator::PatchMeshGenerator(), PenetrationAux::PenetrationAux(), PicardSolve::PicardSolve(), PiecewiseBilinear::PiecewiseBilinear(), PiecewiseLinearInterpolationMaterial::PiecewiseLinearInterpolationMaterial(), ProjectedStatefulMaterialStorageAction::processProperty(), PropertyReadFile::PropertyReadFile(), PseudoTimestep::PseudoTimestep(), RandomIC::RandomIC(), InputParameterWarehouse::removeInputParameters(), OutputWarehouse::resetFileBase(), FEProblem::setInputParametersFEProblem(), FEProblemBase::setInputParametersFEProblem(), SideSetsFromBoundingBoxGenerator::SideSetsFromBoundingBoxGenerator(), SteffensenSolve::SteffensenSolve(), DumpObjectsProblem::stringifyParameters(), TaggingInterface::TaggingInterface(), Transfer::Transfer(), Transient::Transient(), VectorBodyForce::VectorBodyForce(), VectorFunctionDirichletBC::VectorFunctionDirichletBC(), VectorFunctionIC::VectorFunctionIC(), and VectorMagnitudeFunctorMaterialTempl< is_ad >::VectorMagnitudeFunctorMaterialTempl().
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inherited |
Emits an informational message prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message.
If this object's parameters were not created directly by the Parser, then this function falls back to the normal behavior of mooseInfo - only printing a message using the given args.
Definition at line 260 of file MooseBaseParameterInterface.h.
Referenced by TransientMultiApp::TransientMultiApp().
|
inherited |
Emits a warning prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message.
If this object's parameters were not created directly by the Parser, then this function falls back to the normal behavior of mooseWarning - only printing a message using the given args.
Definition at line 253 of file MooseBaseParameterInterface.h.
Referenced by MultiAppNearestNodeTransfer::execute(), FEProblemSolve::FEProblemSolve(), UniqueExtraIDMeshGenerator::generate(), PlaneIDMeshGenerator::generate(), Terminator::initialSetup(), and MooseMesh().
|
inline |
Definition at line 999 of file MooseMesh.h.
Referenced by ConsoleUtils::outputMeshInformation().
|
static |
returns MooseMesh partitioning options so other classes can use it
Definition at line 3646 of file MooseMesh.C.
Referenced by validParams().
|
inherited |
Get the PerfGraph.
Definition at line 78 of file PerfGraphInterface.C.
Referenced by CommonOutputAction::act(), PerfGraphData::finalize(), and PerfGraphOutput::output().
bool MooseMesh::prepare | ( | const MeshBase * | mesh_to_clone | ) |
Calls prepare_for_use() if the underlying MeshBase object isn't prepared, then communicates various boundary information on parallel meshes.
Also calls update() internally. Instead of calling prepare_for_use
on the currently held MeshBase
object, a mesh_to_clone
can be provided. If it is provided (e.g. this method is given a non-null argument), then _mesh
will be assigned a clone of the mesh_to_clone
. The provided mesh_to_clone
must already be prepared
mesh_to_clone | If nonnull, we will clone this mesh instead of preparing our current one |
prepare_for_use
called (e.g. this method returns true
when called for the reference mesh), then we must pass the reference mesh base object into this method when we call this for the displaced mesh. This is because the displaced mesh must be an exact clone of the reference mesh. We have seen that prepare_for_use
called on two previously identical meshes can result in two different meshes even with Metis partitioning Definition at line 364 of file MooseMesh.C.
bool MooseMesh::prepared | ( | ) | const |
Setter/getter for whether the mesh is prepared.
Definition at line 2887 of file MooseMesh.C.
Referenced by needsPrepareForUse(), AnnularMesh::prepared(), and GeneratedMesh::prepared().
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virtual |
If we are explicitly setting the mesh to not prepared, then we've likely modified the mesh and can no longer make assumptions about orthogonality. We really should recheck.
Reimplemented in AnnularMesh, and GeneratedMesh.
Definition at line 2893 of file MooseMesh.C.
void MooseMesh::printInfo | ( | std::ostream & | os = libMesh::out , |
const unsigned int | verbosity = 0 |
||
) | const |
Calls print_info() on the underlying Mesh.
Definition at line 3212 of file MooseMesh.C.
Referenced by Adaptivity::adaptMesh().
|
virtual |
Definition at line 2875 of file MooseMesh.C.
Referenced by PointSamplerBase::getLocalElemContainingPoint(), ElementalVariableValue::initialSetup(), DisplacedProblem::reinitElemPhys(), FEProblemBase::reinitElemPhys(), DisplacedProblem::reinitNeighborPhys(), FEProblemBase::reinitNeighborPhys(), and EqualValueBoundaryConstraint::updateConstrainedNodes().
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virtual |
Definition at line 2881 of file MooseMesh.C.
|
virtual |
Definition at line 662 of file MooseMesh.C.
Referenced by NonlinearSystemBase::findImplicitGeometricCouplingEntries(), nodeRef(), queryNodePtr(), and EqualValueBoundaryConstraint::updateConstrainedNodes().
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virtual |
Definition at line 678 of file MooseMesh.C.
ConstElemPointerRange * MooseMesh::refinedElementRange | ( | ) | const |
Return a range that is suitable for threaded execution over elements that were just refined.
Definition at line 733 of file MooseMesh.C.
Referenced by FEProblemBase::meshChangedHelper().
|
protectedinherited |
Call to register a named section for timing.
section_name | The name of the code section to be timed |
level | The importance of the timer - lower is more important (0 will always come out) |
Definition at line 53 of file PerfGraphInterface.C.
|
protectedinherited |
Call to register a named section for timing.
section_name | The name of the code section to be timed |
level | The importance of the timer - lower is more important (0 will always come out) |
live_message | The message to be printed to the screen during execution |
print_dots | Whether or not progress dots should be printed for this section |
Definition at line 64 of file PerfGraphInterface.C.
|
protectedinherited |
Gets the name of a piece of restartable data given a data name, adding the system name and object name prefix.
This should only be used in this interface and in testing.
Definition at line 66 of file Restartable.C.
Referenced by Restartable::declareRecoverableData(), and Restartable::declareRestartableDataHelper().
|
pure virtual |
A safer version of the clone() method that hands back an allocated object wrapped in a smart pointer.
This makes it much less likely that the caller will leak the memory in question.
Implemented in PatternedMesh, StitchedMesh, MeshGeneratorMesh, AnnularMesh, ConcentricCircleMesh, GeneratedMesh, RinglebMesh, SpiralAnnularMesh, ImageMesh, FileMesh, and TiledMesh.
Referenced by SetupMeshAction::act(), and OversampleOutput::cloneMesh().
For axisymmetric simulations, set the symmetry coordinate axis.
For r in the x-direction, z in the y-direction the coordinate axis would be y
Definition at line 3929 of file MooseMesh.C.
Referenced by FEProblemBase::setAxisymmetricCoordAxis().
void MooseMesh::setBoundaryName | ( | BoundaryID | boundary_id, |
BoundaryName | name | ||
) |
This method sets the boundary name of the boundary based on the id parameter.
Definition at line 1554 of file MooseMesh.C.
Referenced by ActivateElementsUserObjectBase::setNewBoundayName().
void MooseMesh::setBoundaryToNormalMap | ( | std::unique_ptr< std::map< BoundaryID, RealVectorValue >> | boundary_map | ) |
Sets the mapping between BoundaryID and normal vector Is called by AddAllSideSetsByNormals.
Definition at line 2951 of file MooseMesh.C.
void MooseMesh::setBoundaryToNormalMap | ( | std::map< BoundaryID, RealVectorValue > * | boundary_map | ) |
Definition at line 2958 of file MooseMesh.C.
Set the coordinate system data to that of other_mesh
.
Definition at line 4038 of file MooseMesh.C.
Referenced by DisplacedProblem::DisplacedProblem().
void MooseMesh::setCoordSystem | ( | const std::vector< SubdomainName > & | blocks, |
const MultiMooseEnum & | coord_sys | ||
) |
Set the coordinate system for the provided blocks to coord_sys
.
Definition at line 3823 of file MooseMesh.C.
Referenced by prepare(), and FEProblemBase::setCoordSystem().
void MooseMesh::setCustomPartitioner | ( | Partitioner * | partitioner | ) |
Setter for custom partitioner.
Definition at line 3445 of file MooseMesh.C.
void MooseMesh::setGeneralAxisymmetricCoordAxes | ( | const std::vector< SubdomainName > & | blocks, |
const std::vector< std::pair< Point, RealVectorValue >> & | axes | ||
) |
Sets the general coordinate axes for axisymmetric blocks.
This method must be used if any of the following are true:
[in] | blocks | Subdomain names |
[in] | axes | Pair of values defining the axisymmetric coordinate axis for each subdomain. The first value is the point on the axis corresponding to the origin. The second value is the direction vector of the axis (normalization not necessary). |
Definition at line 3937 of file MooseMesh.C.
Referenced by prepare().
This sets the inflation amount for the bounding box for each partition for use in ghosting boundaries.
Definition at line 2985 of file MooseMesh.C.
void MooseMesh::setIsCustomPartitionerRequested | ( | bool | cpr | ) |
Definition at line 3473 of file MooseMesh.C.
void MooseMesh::setMeshBase | ( | std::unique_ptr< MeshBase > | mesh_base | ) |
Method to set the mesh_base object.
If this method is NOT called prior to calling init(), a MeshBase object will be automatically constructed and set.
Definition at line 2618 of file MooseMesh.C.
void MooseMesh::setMeshBoundaryIDs | ( | std::set< BoundaryID > | boundary_IDs | ) |
Sets the set of BoundaryIDs Is called by AddAllSideSetsByNormals.
Definition at line 2945 of file MooseMesh.C.
|
inline |
Allow to change parallel type.
Definition at line 2079 of file MooseMesh.h.
Referenced by buildTypedMesh().
|
static |
Method for setting the partitioner on the passed in mesh_base object.
Definition at line 3390 of file MooseMesh.C.
Referenced by setPartitionerHelper().
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protected |
Definition at line 3378 of file MooseMesh.C.
Referenced by buildTypedMesh().
void MooseMesh::setPatchUpdateStrategy | ( | Moose::PatchUpdateType | patch_update_strategy | ) |
Set the patch size update strategy.
Definition at line 3157 of file MooseMesh.C.
void MooseMesh::setSubdomainName | ( | SubdomainID | subdomain_id, |
const SubdomainName & | name | ||
) |
This method sets the name for subdomain_id
to name
.
Definition at line 1525 of file MooseMesh.C.
Referenced by MooseMesh().
|
static |
This method sets the name for subdomain_id
on the provided mesh
to name
.
Definition at line 1531 of file MooseMesh.C.
Set uniform refinement level.
Definition at line 2972 of file MooseMesh.C.
void MooseMesh::setupFiniteVolumeMeshData | ( | ) | const |
Sets up the additional data needed for finite volume computations.
This involves building FaceInfo and ElemInfo objects, caching variable associations and elemental DoF indices for FV variables.
Definition at line 3814 of file MooseMesh.C.
Referenced by DisplacedProblem::init(), FEProblemBase::init(), FEProblemBase::meshChangedHelper(), and DisplacedProblem::updateMesh().
unsigned int MooseMesh::sideWithBoundaryID | ( | const Elem *const | elem, |
const BoundaryID | boundary_id | ||
) | const |
Calls BoundaryInfo::side_with_boundary_id().
Definition at line 2771 of file MooseMesh.C.
|
inline |
Return a flag indicating whether or not we should skip remote deletion and repartition after uniform refinements.
If the flag is true, uniform refinements will run more efficiently, but at the same time, there might be extra ghosting elements. The number of layers of additional ghosting elements depends on the number of uniform refinement levels. This flag should be used only when you have a "fine enough" coarse mesh and want to refine the mesh by a few levels. Otherwise, it might introduce an unbalanced workload and too large ghosting domain.
Definition at line 2073 of file MooseMesh.h.
|
inline |
Whether or not skip uniform refinements when using a pre-split mesh.
Definition at line 570 of file MooseMesh.h.
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protectedinherited |
section_name
.Optionally adds a prefix if one is defined.
Definition at line 47 of file PerfGraphInterface.C.
Referenced by PerfGraphInterface::registerTimedSection().
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inlineinherited |
Get the type of this class.
Definition at line 50 of file MooseBase.h.
Referenced by CreateProblemDefaultAction::act(), SetupDebugAction::act(), MaterialDerivativeTestAction::act(), MaterialOutputAction::act(), FEProblemBase::addAuxArrayVariable(), FEProblemBase::addAuxScalarVariable(), FEProblemBase::addAuxVariable(), FEProblemBase::addDistribution(), FEProblemBase::addFunction(), FEProblemBase::addMeshDivision(), MeshGenerator::addMeshSubgenerator(), FEProblemBase::addObject(), FEProblemBase::addPredictor(), CreateDisplacedProblemAction::addProxyRelationshipManagers(), FEProblemBase::addReporter(), FEProblemBase::addSampler(), FEProblemBase::addTimeIntegrator(), MooseServer::addValuesToList(), DisplacedProblem::addVectorTag(), SubProblem::addVectorTag(), FEProblemBase::advanceMultiApps(), PhysicsBase::assertParamDefined(), AuxKernelTempl< Real >::AuxKernelTempl(), FEProblemBase::backupMultiApps(), BoundaryPreservedMarker::BoundaryPreservedMarker(), DistributedRectilinearMeshGenerator::buildCube(), buildHRefinementAndCoarseningMaps(), buildPRefinementAndCoarseningMaps(), MeshDiagnosticsGenerator::checkNonConformalMeshFromAdaptivity(), PhysicsBase::checkRequiredTasks(), FEProblemBase::computeAuxiliaryKernels(), ADDGKernel::computeElemNeighJacobian(), DGKernel::computeElemNeighJacobian(), ElemElemConstraint::computeElemNeighJacobian(), ArrayDGKernel::computeElemNeighJacobian(), ADDGKernel::computeElemNeighResidual(), DGKernel::computeElemNeighResidual(), ElemElemConstraint::computeElemNeighResidual(), ArrayDGKernel::computeElemNeighResidual(), LowerDIntegratedBC::computeLowerDJacobian(), ArrayLowerDIntegratedBC::computeLowerDJacobian(), DGLowerDKernel::computeLowerDJacobian(), ArrayDGLowerDKernel::computeLowerDJacobian(), LowerDIntegratedBC::computeLowerDOffDiagJacobian(), ArrayLowerDIntegratedBC::computeLowerDOffDiagJacobian(), ArrayHFEMDirichletBC::computeLowerDQpJacobian(), ArrayHFEMDiffusion::computeLowerDQpJacobian(), HFEMDiffusion::computeLowerDQpJacobian(), HFEMDirichletBC::computeLowerDQpJacobian(), ArrayHFEMDirichletBC::computeLowerDQpOffDiagJacobian(), HFEMDirichletBC::computeLowerDQpOffDiagJacobian(), ArrayLowerDIntegratedBC::computeLowerDQpOffDiagJacobian(), ArrayDGLowerDKernel::computeLowerDQpOffDiagJacobian(), FEProblemBase::computeMultiAppsDT(), ADDGKernel::computeOffDiagElemNeighJacobian(), DGKernel::computeOffDiagElemNeighJacobian(), ArrayDGKernel::computeOffDiagElemNeighJacobian(), DGLowerDKernel::computeOffDiagLowerDJacobian(), ArrayDGLowerDKernel::computeOffDiagLowerDJacobian(), DGConvection::computeQpJacobian(), ScalarKernel::computeQpJacobian(), InterfaceDiffusion::computeQpJacobian(), InterfaceReaction::computeQpJacobian(), ArrayDGDiffusion::computeQpJacobian(), CoupledTiedValueConstraint::computeQpJacobian(), TiedValueConstraint::computeQpJacobian(), DGDiffusion::computeQpJacobian(), LinearNodalConstraint::computeQpJacobian(), EqualValueBoundaryConstraint::computeQpJacobian(), EqualValueEmbeddedConstraint::computeQpJacobian(), CoupledTiedValueConstraint::computeQpOffDiagJacobian(), HFEMTestJump::computeQpOffDiagJacobian(), HFEMTrialJump::computeQpOffDiagJacobian(), EqualValueEmbeddedConstraint::computeQpOffDiagJacobian(), ArrayDGKernel::computeQpOffDiagJacobian(), DGConvection::computeQpResidual(), HFEMDiffusion::computeQpResidual(), ArrayHFEMDiffusion::computeQpResidual(), ScalarKernel::computeQpResidual(), InterfaceDiffusion::computeQpResidual(), InterfaceReaction::computeQpResidual(), ADDGAdvection::computeQpResidual(), ArrayDGDiffusion::computeQpResidual(), CoupledTiedValueConstraint::computeQpResidual(), TiedValueConstraint::computeQpResidual(), DGDiffusion::computeQpResidual(), LinearNodalConstraint::computeQpResidual(), ADDGDiffusion::computeQpResidual(), HFEMTrialJump::computeQpResidual(), EqualValueBoundaryConstraint::computeQpResidual(), HFEMTestJump::computeQpResidual(), EqualValueEmbeddedConstraint::computeQpResidual(), FEProblemBase::computeUserObjectByName(), FEProblemBase::computeUserObjects(), FEProblemBase::computeUserObjectsInternal(), BatchMaterial< Tuple, Output, Input >::construct(), DisplacedProblem::createQRules(), FEProblemBase::createQRules(), DumpObjectsProblem::deduceNecessaryParameters(), DumpObjectsProblem::dumpObjectHelper(), FEProblemBase::duplicateVariableCheck(), ElementGroupCentroidPositions::ElementGroupCentroidPositions(), MooseBaseErrorInterface::errorPrefix(), AB2PredictorCorrector::estimateTimeError(), FEProblemBase::execMultiApps(), FEProblemBase::execMultiAppTransfers(), FEProblemBase::execTransfers(), FEProblemBase::finishMultiAppStep(), FVScalarLagrangeMultiplierInterface::FVScalarLagrangeMultiplierInterface(), LowerDBlockFromSidesetGenerator::generate(), SubdomainPerElementGenerator::generate(), PatternedMeshGenerator::generate(), MeshGenerator::generateInternal(), MultiAppTransfer::getAppInfo(), TransfiniteMeshGenerator::getEdge(), ElementGenerator::getElemType(), MooseServer::getInputLookupDefinitionNodes(), FEProblemBase::getMaterial(), FEProblemBase::getMaterialData(), MaterialOutputAction::getParams(), ReporterData::getReporterInfo(), Transient::getTimeIntegratorName(), FEProblemBase::getTransfers(), DisplacedProblem::getVectorTags(), SubProblem::getVectorTags(), CommonOutputAction::hasConsole(), FEProblemBase::hasMultiApps(), AdvancedOutput::hasOutput(), FEProblemBase::incrementMultiAppTStep(), AdvancedOutput::initAvailableLists(), FunctorPositions::initialize(), FunctorTimes::initialize(), MultiAppConservativeTransfer::initialSetup(), ArrayDGDiffusion::initQpResidual(), AdvancedOutput::initShowHideLists(), RelationshipManager::isType(), FEProblemBase::logAdd(), MaterialFunctorConverterTempl< T >::MaterialFunctorConverterTempl(), DisplacedProblem::numVectorTags(), SubProblem::numVectorTags(), MooseBaseParameterInterface::objectErrorPrefix(), Console::output(), AdvancedOutput::output(), OversampleOutput::outputStep(), Output::outputStep(), FEProblemBase::outputStep(), ProjectedStatefulMaterialStorageAction::processProperty(), SolutionInvalidInterface::registerInvalidSolutionInternal(), FEProblemBase::restoreMultiApps(), MeshRepairGenerator::separateSubdomainsByElementType(), FEProblemBase::setCoupling(), MooseBase::typeAndName(), ScalarKernelBase::uOld(), AuxScalarKernel::uOld(), DisplacedProblem::updateGeomSearch(), FEProblemBase::updateGeomSearch(), UserObjectInterface::userObjectType(), and AdvancedOutput::wantOutput().
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inlineinherited |
Get the class's combined type and name; useful in error handling.
Definition at line 62 of file MooseBase.h.
Referenced by MaterialPropertyStorage::addProperty(), MeshGeneratorSystem::dataDrivenError(), ReporterContext< std::vector< T > >::finalize(), and ReporterData::getReporterInfo().
unsigned int MooseMesh::uniformRefineLevel | ( | ) | const |
Returns the level of uniform refinement requested (zero if AMR is disabled).
Definition at line 2966 of file MooseMesh.C.
Referenced by FEProblemBase::initialSetup(), and Adaptivity::uniformRefineWithProjection().
|
inlineinherited |
The unique name for accessing input parameters of this object in the InputParameterWarehouse.
Definition at line 68 of file MooseBaseParameterInterface.h.
Referenced by MooseBaseParameterInterface::connectControllableParams(), and Action::uniqueActionName().
|
inlineinherited |
The unique parameter name of a valid parameter of this object for accessing parameter controls.
Definition at line 53 of file MooseBaseParameterInterface.h.
void MooseMesh::update | ( | ) |
Calls buildNodeListFromSideList(), buildNodeList(), and buildBndElemList().
Definition at line 483 of file MooseMesh.C.
Referenced by meshChanged(), prepare(), and EqualValueBoundaryConstraint::updateConstrainedNodes().
void MooseMesh::updateActiveSemiLocalNodeRange | ( | std::set< dof_id_type > & | ghosted_elems | ) |
Clears the "semi-local" node list and rebuilds it.
Semi-local nodes consist of all nodes that belong to local and ghost elements.
Definition at line 753 of file MooseMesh.C.
Referenced by FEProblemBase::initialSetup(), FEProblemBase::meshChangedHelper(), and FEProblemBase::possiblyRebuildGeomSearchPatches().
|
private |
Update the coordinate transformation object based on our coordinate system data.
The coordinate transformation will be created if it hasn't been already
Definition at line 4001 of file MooseMesh.C.
Referenced by MooseMesh(), setAxisymmetricCoordAxis(), setCoordSystem(), and setGeneralAxisymmetricCoordAxes().
bool MooseMesh::usingGeneralAxisymmetricCoordAxes | ( | ) | const |
Returns true if general axisymmetric coordinate axes are being used.
Definition at line 3995 of file MooseMesh.C.
Referenced by getAxisymmetricRadialCoord(), and getUniqueCoordSystem().
|
static |
Typical "Moose-style" constructor and copy constructor.
Definition at line 78 of file MooseMesh.C.
Referenced by FileMesh::validParams(), TiledMesh::validParams(), SpiralAnnularMesh::validParams(), GeneratedMesh::validParams(), RinglebMesh::validParams(), AnnularMesh::validParams(), ConcentricCircleMesh::validParams(), MeshGeneratorMesh::validParams(), StitchedMesh::validParams(), and PatternedMesh::validParams().
|
protectedinherited |
Builds Actions.
Definition at line 174 of file MooseBaseParameterInterface.h.
Referenced by PhysicsBase::checkRequiredTasks(), CommonOutputAction::create(), AddVariableAction::createInitialConditionAction(), DynamicObjectRegistrationAction::DynamicObjectRegistrationAction(), CreateExecutionerAction::setupAutoPreconditioning(), and ReadExecutorParamsAction::setupAutoPreconditioning().
|
protected |
A range for use with threading.
We do this so that it doesn't have to get rebuilt all the time (which takes time).
Definition at line 1451 of file MooseMesh.h.
Referenced by getActiveLocalElementRange(), and meshChanged().
|
protected |
Definition at line 1454 of file MooseMesh.h.
Referenced by getActiveNodeRange(), and meshChanged().
|
protected |
Definition at line 1453 of file MooseMesh.h.
Referenced by getActiveSemiLocalNodeRange(), meshChanged(), and updateActiveSemiLocalNodeRange().
|
mutableprivate |
FaceInfo object storing information for face based loops.
This container holds all the FaceInfo
objects accessible from this process
Definition at line 1560 of file MooseMesh.h.
Referenced by allFaceInfo(), buildFiniteVolumeInfo(), cacheFaceInfoVariableOwnership(), and computeFiniteVolumeCoords().
|
private |
Whether or not this Mesh is allowed to read a recovery file.
Definition at line 1765 of file MooseMesh.h.
Referenced by allowRecovery(), and init().
|
private |
Whether to allow removal of remote elements.
Definition at line 1774 of file MooseMesh.h.
Referenced by allowRemoteElementRemoval(), buildTypedMesh(), deleteRemoteElements(), and setMeshBase().
|
protectedinherited |
The MOOSE application this is associated with.
Definition at line 69 of file MooseBase.h.
|
private |
Unique element integer IDs for each subdomain and each extra element integers.
Definition at line 1786 of file MooseMesh.h.
Referenced by buildElemIDInfo(), getAllElemIDs(), and getElemIDsOnBlocks().
|
protected |
list of nodes that belongs to a specified block (domain)
Definition at line 1509 of file MooseMesh.h.
Referenced by cacheInfo(), and getNodeBlockIds().
|
protected |
Map of set of elem IDs connected to each boundary.
Definition at line 1501 of file MooseMesh.h.
Referenced by buildBndElemList(), freeBndElems(), getBoundariesToActiveSemiLocalElemIds(), getBoundaryActiveSemiLocalElemIds(), and isBoundaryElem().
|
protected |
Definition at line 1458 of file MooseMesh.h.
Referenced by getBoundaryElementRange(), isBoundaryFullyExternalToSubdomains(), and meshChanged().
|
protected |
array of boundary elems
Definition at line 1496 of file MooseMesh.h.
Referenced by bndElemsBegin(), bndElemsEnd(), buildBndElemList(), freeBndElems(), and getBoundaryActiveNeighborElemIds().
|
protected |
Map of sets of node IDs in each boundary.
Definition at line 1493 of file MooseMesh.h.
Referenced by addQuadratureNode(), buildNodeList(), freeBndNodes(), and isBoundaryNode().
|
protected |
Definition at line 1456 of file MooseMesh.h.
Referenced by addQuadratureNode(), getBoundaryNodeRange(), and meshChanged().
|
protected |
array of boundary nodes
Definition at line 1489 of file MooseMesh.h.
Referenced by addQuadratureNode(), bndNodesBegin(), bndNodesEnd(), buildNodeList(), and freeBndNodes().
|
protected |
The boundary to normal map - valid only when AddAllSideSetsByNormals is active.
Definition at line 1486 of file MooseMesh.h.
Referenced by getNormalByBoundaryID(), and setBoundaryToNormalMap().
|
protected |
The bounds in each dimension of the mesh for regular orthogonal meshes.
Definition at line 1536 of file MooseMesh.h.
Referenced by detectOrthogonalDimRanges(), getMaxInDimension(), getMinInDimension(), and MooseMesh().
|
protected |
Whether or not this mesh was built from another mesh.
Definition at line 1376 of file MooseMesh.h.
Referenced by prepare().
|
protected |
Map of Parent elements to child elements for elements that were just coarsened.
NOTE: the child element pointers ARE PROBABLY INVALID. Only use them for indexing!
Definition at line 1442 of file MooseMesh.h.
Referenced by cacheChangedLists(), and coarsenedElementChildren().
|
protected |
The elements that were just coarsened.
Definition at line 1435 of file MooseMesh.h.
Referenced by cacheChangedLists(), and coarsenedElementRange().
|
inherited |
An instance of helper class to write streams to the Console objects.
Definition at line 31 of file ConsoleStreamInterface.h.
Referenced by IterationAdaptiveDT::acceptStep(), MeshOnlyAction::act(), SetupDebugAction::act(), MaterialOutputAction::act(), Adaptivity::adaptMesh(), FEProblemBase::adaptMesh(), PerfGraph::addToExecutionList(), SimplePredictor::apply(), SystemBase::applyScalingFactors(), MultiApp::backup(), FEProblemBase::backupMultiApps(), CoarsenedPiecewiseLinear::buildCoarsenedGrid(), MeshDiagnosticsGenerator::checkElementOverlap(), MeshDiagnosticsGenerator::checkElementTypes(), MeshDiagnosticsGenerator::checkElementVolumes(), FEProblemBase::checkExceptionAndStopSolve(), MeshDiagnosticsGenerator::checkLocalJacobians(), MeshDiagnosticsGenerator::checkNonConformalMesh(), MeshDiagnosticsGenerator::checkNonConformalMeshFromAdaptivity(), MeshDiagnosticsGenerator::checkNonPlanarSides(), FEProblemBase::checkProblemIntegrity(), ReferenceResidualProblem::checkRelativeConvergence(), MeshDiagnosticsGenerator::checkSidesetsOrientation(), IterationAdaptiveDT::computeAdaptiveDT(), Transient::computeConstrainedDT(), FixedPointSolve::computeCustomConvergencePostprocessor(), NonlinearSystemBase::computeDamping(), IterationAdaptiveDT::computeDT(), IterationAdaptiveDT::computeFailedDT(), IterationAdaptiveDT::computeInitialDT(), IterationAdaptiveDT::computeInterpolationDT(), NonlinearSystemBase::computeScaling(), Problem::console(), IterationAdaptiveDT::constrainStep(), TimeStepper::constrainStep(), MultiApp::createApp(), FEProblemBase::execMultiApps(), FEProblemBase::execMultiAppTransfers(), MessageFromInput::execute(), Steady::execute(), Eigenvalue::execute(), ActionWarehouse::executeActionsWithAction(), ActionWarehouse::executeAllActions(), ElementQualityChecker::finalize(), FEProblemBase::finishMultiAppStep(), MeshRepairGenerator::fixOverlappingNodes(), CoarsenBlockGenerator::generate(), MeshGenerator::generateInternal(), VariableCondensationPreconditioner::getDofToCondense(), InversePowerMethod::init(), NonlinearEigen::init(), FEProblemBase::initialAdaptMesh(), EigenExecutionerBase::inversePowerIteration(), FEProblemBase::joinAndFinalize(), Transient::keepGoing(), IterationAdaptiveDT::limitDTByFunction(), IterationAdaptiveDT::limitDTToPostprocessorValue(), FEProblemBase::logAdd(), EigenExecutionerBase::makeBXConsistent(), Console::meshChanged(), MooseBaseErrorInterface::mooseDeprecated(), MooseBaseErrorInterface::mooseInfo(), MooseBaseErrorInterface::mooseWarning(), MooseBaseErrorInterface::mooseWarningNonPrefixed(), ReferenceResidualProblem::nonlinearConvergenceSetup(), ReporterDebugOutput::output(), PerfGraphOutput::output(), MaterialPropertyDebugOutput::output(), DOFMapOutput::output(), VariableResidualNormsDebugOutput::output(), Console::output(), ControlOutput::outputActiveObjects(), ControlOutput::outputChangedControls(), ControlOutput::outputControls(), Console::outputInput(), Console::outputPostprocessors(), PseudoTimestep::outputPseudoTimestep(), Console::outputReporters(), Console::outputScalarVariables(), Console::outputSystemInformation(), FEProblemBase::possiblyRebuildGeomSearchPatches(), EigenExecutionerBase::postExecute(), AB2PredictorCorrector::postSolve(), ActionWarehouse::printActionDependencySets(), SolutionInvalidity::printDebug(), EigenExecutionerBase::printEigenvalue(), SecantSolve::printFixedPointConvergenceHistory(), SteffensenSolve::printFixedPointConvergenceHistory(), PicardSolve::printFixedPointConvergenceHistory(), FixedPointSolve::printFixedPointConvergenceReason(), PerfGraphLivePrint::printLiveMessage(), MaterialPropertyDebugOutput::printMaterialMap(), PerfGraphLivePrint::printStats(), AutomaticMortarGeneration::projectPrimaryNodesSinglePair(), AutomaticMortarGeneration::projectSecondaryNodesSinglePair(), CoarsenBlockGenerator::recursiveCoarsen(), SolutionTimeAdaptiveDT::rejectStep(), MultiApp::restore(), FEProblemBase::restoreMultiApps(), SimplePredictor::shouldApply(), Checkpoint::shouldOutput(), SubProblem::showFunctorRequestors(), SubProblem::showFunctors(), FullSolveMultiApp::showStatusMessage(), FEProblemSolve::solve(), FixedPointSolve::solve(), NonlinearSystem::solve(), EigenProblem::solve(), LStableDirk2::solve(), LStableDirk3::solve(), ImplicitMidpoint::solve(), ExplicitTVDRK2::solve(), LStableDirk4::solve(), AStableDirk4::solve(), ExplicitRK2::solve(), TransientMultiApp::solveStep(), FixedPointSolve::solveStep(), PerfGraphLivePrint::start(), AB2PredictorCorrector::step(), NonlinearEigen::takeStep(), Transient::takeStep(), Console::writeTimestepInformation(), Console::writeVariableNorms(), and FEProblemBase::~FEProblemBase().
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Whether or not to allow generation of nodesets from sidesets.
Definition at line 1768 of file MooseMesh.h.
Referenced by buildNodeListFromSideList().
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Type of coordinate system per subdomain.
Definition at line 1804 of file MooseMesh.h.
Referenced by checkCoordinateSystems(), getCoordSystem(), getUniqueCoordSystem(), setCoordData(), setCoordSystem(), and setGeneralAxisymmetricCoordAxes().
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Whether the coordinate system has been set.
Definition at line 1817 of file MooseMesh.h.
Referenced by prepare(), and setCoordSystem().
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A coordinate transformation object that describes how to transform this problem's coordinate system into the canonical/reference coordinate system.
Definition at line 1814 of file MooseMesh.h.
Referenced by coordTransform(), lengthUnit(), and updateCoordTransform().
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The custom partitioner.
Definition at line 1397 of file MooseMesh.h.
Referenced by buildTypedMesh(), and setCustomPartitioner().
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Definition at line 1398 of file MooseMesh.h.
Referenced by buildTypedMesh(), isCustomPartitionerRequested(), and setIsCustomPartitionerRequested().
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Definition at line 1386 of file MooseMesh.h.
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Whether we have p-refinement (as opposed to h-refinement)
Definition at line 1823 of file MooseMesh.h.
Referenced by doingPRefinement().
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Holds only those ElemInfo
objects that have processor_id
equal to this process's id, e.g.
the local ElemInfo
objects
Definition at line 1556 of file MooseMesh.h.
Referenced by buildFiniteVolumeInfo(), elemInfoVector(), ownedElemInfoBegin(), and ownedElemInfoEnd().
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Map from elem-side pair to FaceInfo.
Definition at line 1568 of file MooseMesh.h.
Referenced by buildFiniteVolumeInfo(), and faceInfo().
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Map connecting elems with their corresponding ElemInfo, we use the element ID as the key.
Definition at line 1552 of file MooseMesh.h.
Referenced by buildFiniteVolumeInfo(), cacheFVElementalDoFs(), computeFiniteVolumeCoords(), and elemInfo().
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Definition at line 1505 of file MooseMesh.h.
Referenced by addQuadratureNode(), clearQuadratureNodes(), and getQuadratureNode().
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Holds mappings for "internal" child sides to parent volume. The second key is (child, child_side).
Definition at line 1713 of file MooseMesh.h.
Referenced by buildRefinementMap(), and getRefinementMap().
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Holds mappings for volume to volume and parent side to child side Map key:
_from
data member will correspond to the parent quadrature point index. The _to
data member will correspond to which child element quadrature point is closest to the parent quadrature point. And _distance
is the distance between the two Definition at line 1730 of file MooseMesh.h.
Referenced by buildCoarseningMap(), and getCoarseningMap().
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Definition at line 1732 of file MooseMesh.h.
Referenced by buildPRefinementAndCoarseningMaps(), and getPCoarseningMap().
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Definition at line 1734 of file MooseMesh.h.
Referenced by buildPRefinementAndCoarseningMaps(), and getPCoarseningSideMap().
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Definition at line 1707 of file MooseMesh.h.
Referenced by buildPRefinementAndCoarseningMaps(), and getPRefinementMap().
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Definition at line 1709 of file MooseMesh.h.
Referenced by buildPRefinementAndCoarseningMaps(), and getPRefinementSideMap().
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Holds mappings for volume to volume and parent side to child side Map key:
_from
index corresponds to the child element reference point, a _to
index which corresponds to the reference point on the parent element that the child element reference point is closest to, and a _distance
member which is the distance between the mapped child and parent reference quadrature points Definition at line 1705 of file MooseMesh.h.
Referenced by buildRefinementMap(), and getRefinementMap().
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Reference to the "enable" InputParameters, used by Controls for toggling on/off MooseObjects.
Definition at line 53 of file MooseObject.h.
Referenced by MooseObject::enabled().
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Definition at line 1506 of file MooseMesh.h.
Referenced by addQuadratureNode(), buildNodeList(), and clearQuadratureNodes().
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A vector containing the nodes at the corners of a regular orthogonal mesh.
Definition at line 1590 of file MooseMesh.h.
Referenced by detectOrthogonalDimRanges().
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Holds only those FaceInfo
objects that have processor_id
equal to this process's id, e.g.
the local FaceInfo
objects
Definition at line 1564 of file MooseMesh.h.
Referenced by buildFiniteVolumeInfo(), faceInfo(), nFace(), ownedFaceInfoBegin(), and ownedFaceInfoEnd().
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protectedinherited |
The Factory associated with the MooseApp.
Definition at line 171 of file MooseBaseParameterInterface.h.
Referenced by ElementIDOutputAction::act(), AutoCheckpointAction::act(), PartitionerAction::act(), CreateExecutionerAction::act(), CreateProblemAction::act(), CreateProblemDefaultAction::act(), AdaptivityAction::act(), SetupMeshAction::act(), ComposeTimeStepperAction::act(), SetupDebugAction::act(), SetupPreconditionerAction::act(), SetupPredictorAction::act(), SetupTimeStepperAction::act(), SetupResidualDebugAction::act(), SetAdaptivityOptionsAction::act(), MaterialDerivativeTestAction::act(), CreateDisplacedProblemAction::act(), DisplayGhostingAction::act(), AddControlAction::act(), AddPeriodicBCAction::act(), MaterialOutputAction::act(), AddNodalNormalsAction::act(), CreateDisplacedProblemAction::addProxyRelationshipManagers(), Action::addRelationshipManager(), MooseBaseParameterInterface::connectControllableParams(), DynamicObjectRegistrationAction::DynamicObjectRegistrationAction(), PhysicsBase::getFactory(), MaterialOutputAction::getParams(), and ProjectedStatefulMaterialStorageAction::processProperty().
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Definition at line 1571 of file MooseMesh.h.
Referenced by buildFiniteVolumeInfo(), computeFiniteVolumeCoords(), isFiniteVolumeInfoDirty(), markFiniteVolumeInfoDirty(), and update().
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Set of elements ghosted by ghostGhostedBoundaries.
Definition at line 1777 of file MooseMesh.h.
Referenced by ghostGhostedBoundaries().
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Definition at line 1514 of file MooseMesh.h.
Referenced by addGhostedBoundary(), getGhostedBoundaries(), and ghostGhostedBoundaries().
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Definition at line 1515 of file MooseMesh.h.
Referenced by getGhostedBoundaryInflation(), and setGhostedBoundaryInflation().
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Deprecated (DO NOT USE)
Definition at line 1370 of file MooseMesh.h.
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The number of nearest neighbors to consider for ghosting purposes when iteration patch update strategy is used.
Definition at line 1521 of file MooseMesh.h.
Referenced by getGhostingPatchSize().
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A convenience vector used to hold values in each dimension representing half of the range.
Definition at line 1587 of file MooseMesh.h.
Referenced by addPeriodicVariable(), and minPeriodicVector().
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Whether there are any lower-dimensional blocks that are manifolds of higher-dimensional block faces.
Definition at line 1762 of file MooseMesh.h.
Referenced by cacheInfo(), and hasLowerD().
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Holds a map from a high-order element side to its corresponding lower-d element.
Definition at line 1757 of file MooseMesh.h.
Referenced by buildLowerDMesh(), cacheInfo(), getLowerDElem(), and getLowerDElemMap().
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Flags to indicate whether or not any two extra element integers are the same.
Definition at line 1792 of file MooseMesh.h.
Referenced by areElemIDsIdentical(), and buildElemIDInfo().
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true if mesh is changed (i.e. after adaptivity step)
Definition at line 1423 of file MooseMesh.h.
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Whether this mesh is displaced.
Definition at line 1795 of file MooseMesh.h.
Referenced by isDisplaced().
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True if a Nemesis Mesh was read in.
Definition at line 1426 of file MooseMesh.h.
Referenced by FileMesh::buildMesh(), determineUseDistributedMesh(), prepare(), and FileMesh::read().
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Whether or not we are using a (pre-)split mesh (automatically DistributedMesh)
Definition at line 1542 of file MooseMesh.h.
Referenced by determineUseDistributedMesh(), and isSplit().
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mutableprivate |
Definition at line 1576 of file MooseMesh.h.
Referenced by buildFiniteVolumeInfo().
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Definition at line 1455 of file MooseMesh.h.
Referenced by getLocalNodeRange(), and meshChanged().
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Definition at line 1758 of file MooseMesh.h.
Referenced by buildLowerDMesh(), and getHigherDSide().
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Maximum integer ID for each extra element integer.
Definition at line 1788 of file MooseMesh.h.
Referenced by buildElemIDInfo(), and maxElementID().
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Definition at line 1524 of file MooseMesh.h.
Referenced by getMaxLeafSize().
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Pointer to underlying libMesh mesh object.
Definition at line 1390 of file MooseMesh.h.
Referenced by allowRemoteElementRemoval(), buildFiniteVolumeInfo(), buildPeriodicNodeMap(), deleteRemoteElements(), detectPairedSidesets(), getMaxInDimension(), getMesh(), getMeshPtr(), getMinInDimension(), hasMeshBase(), init(), prepare(), prepared(), and setMeshBase().
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A set of boundary IDs currently present in the mesh.
In serial, this is equivalent to the values returned by _mesh.get_boundary_info().get_boundary_ids(). In parallel, it will contain off-processor boundary IDs as well.
Definition at line 1480 of file MooseMesh.h.
Referenced by getBoundaryIDs(), meshBoundaryIds(), prepare(), and setMeshBoundaryIDs().
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Definition at line 1482 of file MooseMesh.h.
Referenced by meshNodesetIds(), and prepare().
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Definition at line 1481 of file MooseMesh.h.
Referenced by meshSidesetIds(), and prepare().
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A set of subdomain IDs currently present in the mesh.
For parallel meshes, includes subdomains defined on other processors as well.
Definition at line 1472 of file MooseMesh.h.
Referenced by buildLowerDMesh(), cacheInfo(), checkDuplicateSubdomainNames(), meshSubdomains(), and prepare().
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Minimum integer ID for each extra element integer.
Definition at line 1790 of file MooseMesh.h.
Referenced by buildElemIDInfo(), and minElementID().
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True if prepare has been called on the mesh.
Definition at line 1429 of file MooseMesh.h.
Referenced by prepare(), and prepared().
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protectedinherited |
The name of this class, reference to value stored in InputParameters.
Definition at line 75 of file MooseBase.h.
Referenced by AddBCAction::act(), AddDamperAction::act(), AddUserObjectAction::act(), AddDGKernelAction::act(), AddFVInterfaceKernelAction::act(), AddIndicatorAction::act(), AddInterfaceKernelAction::act(), AddTransferAction::act(), AddVectorPostprocessorAction::act(), AddMeshGeneratorAction::act(), AddScalarKernelAction::act(), ReadExecutorParamsAction::act(), AddFunctorMaterialAction::act(), AddKernelAction::act(), AddMaterialAction::act(), AddMarkerAction::act(), AddInitialConditionAction::act(), AddConstraintAction::act(), AddMultiAppAction::act(), AddNodalKernelAction::act(), AddFVInitialConditionAction::act(), AddDiracKernelAction::act(), PartitionerAction::act(), AddPostprocessorAction::act(), AddTimesAction::act(), AddFieldSplitAction::act(), AddPositionsAction::act(), AddReporterAction::act(), AddFVBCAction::act(), AddFVKernelAction::act(), SetupPreconditionerAction::act(), SetupTimeIntegratorAction::act(), AddMeshDivisionAction::act(), AddFunctionAction::act(), AddTimeStepperAction::act(), AddDistributionAction::act(), AddOutputAction::act(), AddSamplerAction::act(), AddControlAction::act(), AddPeriodicBCAction::act(), ADPiecewiseLinearInterpolationMaterial::ADPiecewiseLinearInterpolationMaterial(), PiecewiseTabularBase::buildFromFile(), PiecewiseTabularBase::buildFromXY(), PiecewiseLinearBase::buildInterpolation(), CombinerGenerator::CombinerGenerator(), Executor::Executor(), ExtraIDIntegralReporter::ExtraIDIntegralReporter(), QuadraturePointMultiApp::fillPositions(), CentroidMultiApp::fillPositions(), MultiApp::fillPositions(), FunctionDT::FunctionDT(), FillBetweenSidesetsGenerator::generate(), FillBetweenPointVectorsGenerator::generate(), FillBetweenCurvesGenerator::generate(), NearestPointBase< LayeredSideDiffusiveFluxAverage, SideIntegralVariableUserObject >::name(), ParsedFunctorMaterialTempl< is_ad >::ParsedFunctorMaterialTempl(), PiecewiseBilinear::PiecewiseBilinear(), PiecewiseLinearInterpolationMaterial::PiecewiseLinearInterpolationMaterial(), PiecewiseBase::setData(), and Split::setup().
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Whether we need to delete remote elements after init'ing the EquationSystems.
Definition at line 1771 of file MooseMesh.h.
Referenced by allowRemoteElementRemoval(), and needsRemoteElemDeletion().
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A parallel mesh generator such as DistributedRectilinearMeshGenerator already make everything ready.
We do not need to gather all boundaries to every single processor. In general, we should avoid using ghostGhostedBoundaries when possible since it is not scalable
Definition at line 1783 of file MooseMesh.h.
Referenced by ghostGhostedBoundaries(), and needGhostGhostedBoundaries().
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Holds a map from neighbor subomdain ids to the boundary ids that are attached to it.
Definition at line 1753 of file MooseMesh.h.
Referenced by cacheInfo(), getBoundaryConnectedSecondaryBlocks(), getInterfaceConnectedBlocks(), and getSubdomainInterfaceBoundaryIds().
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Vector of all the Nodes in the mesh for determining when to add a new point.
Definition at line 1530 of file MooseMesh.h.
Referenced by addUniqueNode().
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list of nodes that belongs to a specified nodeset: indexing [nodeset_id] -> [array of node ids]
Definition at line 1512 of file MooseMesh.h.
Referenced by buildNodeList(), freeBndNodes(), getNodeList(), and nodeSetNodes().
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A map of all of the current nodes to the active elements that they are connected to.
Definition at line 1465 of file MooseMesh.h.
Referenced by addQuadratureNode(), nodeToActiveSemilocalElemMap(), and update().
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Definition at line 1466 of file MooseMesh.h.
Referenced by nodeToActiveSemilocalElemMap(), and update().
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A map of all of the current nodes to the elements that they are connected to.
Definition at line 1461 of file MooseMesh.h.
Referenced by addQuadratureNode(), nodeToElemMap(), and update().
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Definition at line 1462 of file MooseMesh.h.
Referenced by nodeToElemMap(), and update().
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A vector holding the paired boundaries for a regular orthogonal mesh.
Definition at line 1539 of file MooseMesh.h.
Referenced by detectPairedSidesets(), and getPairedBoundaryMapping().
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Can be set to DISTRIBUTED, REPLICATED, or DEFAULT.
Determines whether the underlying libMesh mesh is a ReplicatedMesh or DistributedMesh.
Definition at line 1380 of file MooseMesh.h.
Referenced by determineUseDistributedMesh(), and setParallelType().
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Definition at line 1387 of file MooseMesh.h.
Referenced by determineUseDistributedMesh(), and isParallelTypeForced().
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protectedinherited |
Parameters of this object, references the InputParameters stored in the InputParametersWarehouse.
Definition at line 168 of file MooseBaseParameterInterface.h.
Referenced by AddFVICAction::act(), AddICAction::act(), CreateProblemAction::act(), CreateProblemDefaultAction::act(), SetupMeshAction::act(), ComposeTimeStepperAction::act(), SetupDebugAction::act(), AddAuxKernelAction::act(), AddVariableAction::act(), AddPeriodicBCAction::act(), CommonOutputAction::act(), FunctorMaterial::addFunctorPropertyByBlocks(), FVFluxKernel::adjustRMGhostLayers(), BreakMeshByBlockGeneratorBase::BreakMeshByBlockGeneratorBase(), PiecewiseTabularBase::buildFromFile(), PNGOutput::calculateRescalingValues(), SingleRankPartitioner::clone(), RandomPartitioner::clone(), BlockWeightedPartitioner::clone(), PetscExternalPartitioner::clone(), HierarchicalGridPartitioner::clone(), GridPartitioner::clone(), MooseBaseParameterInterface::connectControllableParams(), Console::Console(), AddVariableAction::createInitialConditionAction(), MaterialBase::declareADProperty(), MaterialBase::declareProperty(), FEProblemSolve::FEProblemSolve(), FunctionMaterialBase< is_ad >::FunctionMaterialBase(), FVAdvection::FVAdvection(), FVAnisotropicDiffusion::FVAnisotropicDiffusion(), FVDiffusion::FVDiffusion(), FileMeshGenerator::generate(), MaterialBase::getGenericZeroMaterialProperty(), MeshGenerator::getMeshGeneratorNameFromParam(), MeshGenerator::getMeshGeneratorNamesFromParam(), MooseBaseParameterInterface::getParam(), MooseBaseParameterInterface::getRenamedParam(), MeshGenerator::hasGenerateData(), AddVariableAction::init(), AdvancedOutput::initExecutionTypes(), Console::initialSetup(), MooseBaseParameterInterface::isParamSetByUser(), MooseBaseParameterInterface::isParamValid(), MultiApp::keepSolutionDuringRestore(), MooseBaseParameterInterface::paramErrorMsg(), GlobalParamsAction::parameters(), MooseBaseParameterInterface::parameters(), prepare(), Eigenvalue::prepareSolverOptions(), setCoordSystem(), setPartitionerHelper(), SetupMeshAction::setupMesh(), Transient::setupTimeIntegrator(), MooseBaseParameterInterface::uniqueName(), and MooseBaseParameterInterface::uniqueParameterName().
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The partitioner used on this mesh.
Definition at line 1393 of file MooseMesh.h.
Referenced by partitionerName(), and setPartitionerHelper().
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Definition at line 1394 of file MooseMesh.h.
Referenced by isPartitionerForced(), and setPartitionerHelper().
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The number of nodes to consider in the NearestNode neighborhood.
Definition at line 1518 of file MooseMesh.h.
Referenced by getPatchSize().
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The patch update strategy.
Definition at line 1527 of file MooseMesh.h.
Referenced by getPatchUpdateStrategy(), MooseMesh(), and setPatchUpdateStrategy().
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A map of vectors indicating which dimensions are periodic in a regular orthogonal mesh for the specified variable numbers.
This data structure is populated by addPeriodicVariable.
Definition at line 1582 of file MooseMesh.h.
Referenced by addPeriodicVariable(), and isTranslatedPeriodic().
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protectedinherited |
The MooseApp that owns the PerfGraph.
Definition at line 124 of file PerfGraphInterface.h.
Referenced by PerfGraphInterface::perfGraph().
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protectedinherited |
A prefix to use for all sections.
Definition at line 127 of file PerfGraphInterface.h.
Referenced by PerfGraphInterface::timedSectionName().
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Set for holding user-provided coordinate system type block names.
Definition at line 1820 of file MooseMesh.h.
Referenced by MooseMesh(), prepare(), and setCoordSystem().
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Definition at line 1503 of file MooseMesh.h.
Referenced by addQuadratureNode(), clearQuadratureNodes(), and queryNodePtr().
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The elements that were just refined.
Definition at line 1432 of file MooseMesh.h.
Referenced by cacheChangedLists(), and refinedElementRange().
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Boolean indicating whether this mesh was detected to be regular and orthogonal.
Definition at line 1533 of file MooseMesh.h.
Referenced by addPeriodicVariable(), detectOrthogonalDimRanges(), GeneratedMesh::GeneratedMesh(), getPairedBoundaryMapping(), isRegularOrthogonal(), and prepared().
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The list of active geometric relationship managers (bound to the underlying MeshBase object).
Definition at line 1373 of file MooseMesh.h.
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protectedinherited |
Reference to the application.
Definition at line 227 of file Restartable.h.
Referenced by Restartable::registerRestartableDataOnApp(), and Restartable::registerRestartableNameWithFilterOnApp().
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protectedinherited |
Flag for toggling read only status (see ReporterData)
Definition at line 236 of file Restartable.h.
Referenced by Restartable::registerRestartableDataOnApp().
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protectedinherited |
The system name this object is in.
Definition at line 230 of file Restartable.h.
Referenced by Restartable::restartableName().
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protectedinherited |
The thread ID for this object.
Definition at line 233 of file Restartable.h.
Referenced by Restartable::declareRestartableDataHelper().
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Storage for RZ axis selection.
Definition at line 1807 of file MooseMesh.h.
Referenced by getAxisymmetricRadialCoord(), setAxisymmetricCoordAxis(), and setCoordData().
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Used for generating the semilocal node range.
Definition at line 1445 of file MooseMesh.h.
Referenced by isSemiLocal(), and updateActiveSemiLocalNodeRange().
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Whether or not skip remote deletion and repartition after uniform refinements.
Definition at line 1420 of file MooseMesh.h.
Referenced by setUniformRefineLevel(), and skipDeletionRepartitionAfterRefine().
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Whether or not to skip uniform refinements when using a pre-split mesh.
Definition at line 1417 of file MooseMesh.h.
Referenced by skipRefineWhenUseSplit().
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Holds a map from subdomain ids to associated data.
Definition at line 1750 of file MooseMesh.h.
Referenced by cacheInfo(), getBlockConnectedBlocks(), getBoundaryConnectedBlocks(), getSubdomainBoundaryIds(), and isLowerD().
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Map of subdomain ID to general axisymmetric axis.
Definition at line 1810 of file MooseMesh.h.
Referenced by getGeneralAxisymmetricCoordAxis(), setCoordData(), setGeneralAxisymmetricCoordAxes(), and usingGeneralAxisymmetricCoordAxes().
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protectedinherited |
The type of this class.
Definition at line 72 of file MooseBase.h.
Referenced by FillBetweenCurvesGenerator::generate(), FillBetweenPointVectorsGenerator::generate(), FillBetweenSidesetsGenerator::generate(), FEProblemBase::init(), FEProblemBase::solverTypeString(), and MooseBase::type().
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The level of uniform refinement requested (set to zero if AMR is disabled)
Definition at line 1414 of file MooseMesh.h.
Referenced by setUniformRefineLevel(), and uniformRefineLevel().
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False by default.
Final value is determined by several factors including the 'distribution' setting in the input file, and whether or not the Mesh file is a Nemesis file.
Definition at line 1385 of file MooseMesh.h.
Referenced by buildMeshBaseObject(), buildTypedMesh(), detectPairedSidesets(), determineUseDistributedMesh(), errorIfDistributedMesh(), ghostGhostedBoundaries(), init(), isDistributedMesh(), and setPartitionerHelper().