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MooseMesh Class Referenceabstract

MooseMesh wraps a libMesh::Mesh object and enhances its capabilities by caching additional data and storing more state. More...

#include <MooseMesh.h>

Inheritance diagram for MooseMesh:
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Classes

struct  bnd_elem_iterator
 The definition of the bnd_elem_iterator struct. More...
 
struct  bnd_node_iterator
 The definition of the bnd_node_iterator struct. More...
 
struct  const_bnd_elem_iterator
 The definition of the const_bnd_elem_iterator struct. More...
 
struct  const_bnd_node_iterator
 The definition of the const_bnd_node_iterator struct. More...
 
struct  const_elem_info_iterator
 The definition of the const_elem_info_iterator struct. More...
 
struct  const_face_info_iterator
 The definition of the const_face_info_iterator struct. More...
 
struct  elem_info_iterator
 The definition of the elem_info_iterator struct. More...
 
struct  face_info_iterator
 The definition of the face_info_iterator struct. More...
 
struct  MeshType
 
struct  MeshType< libMesh::DistributedMesh >
 
struct  MeshType< libMesh::ReplicatedMesh >
 
struct  SubdomainData
 

Public Types

enum  ParallelType { ParallelType::DEFAULT, ParallelType::REPLICATED, ParallelType::DISTRIBUTED }
 
using PeriodicNodeInfo = std::pair< const Node *, BoundaryID >
 Helper type for building periodic node maps. More...
 
using DataFileParameterType = DataFileName
 The parameter type this interface expects for a data file name. More...
 

Public Member Functions

 MooseMesh (const InputParameters &parameters)
 
 MooseMesh (const MooseMesh &other_mesh)
 
 MooseMesh ()=delete
 
MooseMeshoperator= (const MooseMesh &other_mesh)=delete
 
virtual ~MooseMesh ()
 
virtual MooseMeshclone () const
 Clone method. More...
 
virtual std::unique_ptr< MooseMeshsafeClone () const =0
 A safer version of the clone() method that hands back an allocated object wrapped in a smart pointer. More...
 
void determineUseDistributedMesh ()
 Determine whether to use a distributed mesh. More...
 
std::unique_ptr< MeshBasebuildMeshBaseObject (unsigned int dim=libMesh::invalid_uint)
 Method to construct a libMesh::MeshBase object that is normally set and used by the MooseMesh object during the "init()" phase. More...
 
template<typename T >
std::unique_ptr< T > buildTypedMesh (unsigned int dim=libMesh::invalid_uint)
 Shortcut method to construct a unique pointer to a libMesh mesh instance. More...
 
void setMeshBase (std::unique_ptr< MeshBase > mesh_base)
 Method to set the mesh_base object. More...
 
virtual void init ()
 Initialize the Mesh object. More...
 
virtual void buildMesh ()=0
 Must be overridden by child classes. More...
 
virtual unsigned int dimension () const
 Returns MeshBase::mesh_dimension(), (not MeshBase::spatial_dimension()!) of the underlying libMesh mesh object. More...
 
virtual unsigned int spatialDimension () const
 Returns MeshBase::spatial_dimension. More...
 
virtual unsigned int effectiveSpatialDimension () const
 Returns the effective spatial dimension determined by the coordinates actually used by the mesh. More...
 
unsigned int getBlocksMaxDimension (const std::vector< SubdomainName > &blocks) const
 Returns the maximum element dimension on the given blocks. More...
 
std::vector< BoundaryIDgetBoundaryIDs (const Elem *const elem, const unsigned short int side) const
 Returns a vector of boundary IDs for the requested element on the requested side. More...
 
const ElemgetLowerDElem (const Elem *, unsigned short int) const
 Returns a const pointer to a lower dimensional element that corresponds to a side of a higher dimensional element. More...
 
unsigned int getHigherDSide (const Elem *elem) const
 Returns the local side ID of the interior parent aligned with the lower dimensional element. More...
 
const std::set< BoundaryID > & getBoundaryIDs () const
 Returns a const reference to a set of all user-specified boundary IDs. More...
 
void buildNodeList ()
 Calls BoundaryInfo::build_node_list()/build_side_list() and makes separate copies of Nodes/Elems in those lists. More...
 
void buildBndElemList ()
 
const std::map< dof_id_type, std::vector< dof_id_type > > & nodeToElemMap ()
 If not already created, creates a map from every node to all elements to which they are connected. More...
 
const std::map< dof_id_type, std::vector< dof_id_type > > & nodeToActiveSemilocalElemMap ()
 If not already created, creates a map from every node to all active semilocal elements to which they are connected. More...
 
virtual bnd_node_iterator bndNodesBegin ()
 Return iterators to the beginning/end of the boundary nodes list. More...
 
virtual bnd_node_iterator bndNodesEnd ()
 
virtual bnd_elem_iterator bndElemsBegin ()
 Return iterators to the beginning/end of the boundary elements list. More...
 
virtual bnd_elem_iterator bndElemsEnd ()
 
void buildNodeListFromSideList ()
 Calls BoundaryInfo::build_node_list_from_side_list(). More...
 
void buildSideList (std::vector< dof_id_type > &el, std::vector< unsigned short int > &sl, std::vector< boundary_id_type > &il)
 Calls BoundaryInfo::build_side_list(). More...
 
std::vector< std::tuple< dof_id_type, unsigned short int, boundary_id_type > > buildSideList ()
 As above, but uses the non-deprecated std::tuple interface. More...
 
std::vector< std::tuple< dof_id_type, unsigned short int, boundary_id_type > > buildActiveSideList () const
 Calls BoundaryInfo::build_active_side_list. More...
 
unsigned int sideWithBoundaryID (const Elem *const elem, const BoundaryID boundary_id) const
 Calls BoundaryInfo::side_with_boundary_id(). More...
 
MeshBase::node_iterator localNodesBegin ()
 Calls local_nodes_begin/end() on the underlying libMesh mesh object. More...
 
MeshBase::node_iterator localNodesEnd ()
 
MeshBase::const_node_iterator localNodesBegin () const
 
MeshBase::const_node_iterator localNodesEnd () const
 
MeshBase::element_iterator activeLocalElementsBegin ()
 Calls active_local_nodes_begin/end() on the underlying libMesh mesh object. More...
 
const MeshBase::element_iterator activeLocalElementsEnd ()
 
MeshBase::const_element_iterator activeLocalElementsBegin () const
 
const MeshBase::const_element_iterator activeLocalElementsEnd () const
 
virtual dof_id_type nNodes () const
 Calls n_nodes/elem() on the underlying libMesh mesh object. More...
 
virtual dof_id_type nElem () const
 
virtual dof_id_type nLocalNodes () const
 
virtual dof_id_type nActiveElem () const
 
virtual dof_id_type nActiveLocalElem () const
 
virtual SubdomainID nSubdomains () const
 
virtual unsigned int nPartitions () const
 
virtual bool skipPartitioning () const
 
virtual bool skipNoncriticalPartitioning () const
 
virtual dof_id_type maxNodeId () const
 Calls max_node/elem_id() on the underlying libMesh mesh object. More...
 
virtual dof_id_type maxElemId () const
 
virtual const Nodenode (const dof_id_type i) const
 Various accessors (pointers/references) for Node "i". More...
 
virtual Nodenode (const dof_id_type i)
 
virtual const NodenodeRef (const dof_id_type i) const
 
virtual NodenodeRef (const dof_id_type i)
 
virtual const NodenodePtr (const dof_id_type i) const
 
virtual NodenodePtr (const dof_id_type i)
 
virtual const NodequeryNodePtr (const dof_id_type i) const
 
virtual NodequeryNodePtr (const dof_id_type i)
 
virtual Elemelem (const dof_id_type i)
 Various accessors (pointers/references) for Elem "i". More...
 
virtual const Elemelem (const dof_id_type i) const
 
virtual ElemelemPtr (const dof_id_type i)
 
virtual const ElemelemPtr (const dof_id_type i) const
 
virtual ElemqueryElemPtr (const dof_id_type i)
 
virtual const ElemqueryElemPtr (const dof_id_type i) const
 
bool prepared () const
 Setter/getter for whether the mesh is prepared. More...
 
virtual void prepared (bool state)
 
void needsPrepareForUse ()
 If this method is called, we will call libMesh's prepare_for_use method when we call Moose's prepare method. More...
 
void meshChanged ()
 Declares that the MooseMesh has changed, invalidates cached data and rebuilds caches. More...
 
virtual void onMeshChanged ()
 Declares a callback function that is executed at the conclusion of meshChanged(). More...
 
void cacheChangedLists ()
 Cache information about what elements were refined and coarsened in the previous step. More...
 
ConstElemPointerRangerefinedElementRange () const
 Return a range that is suitable for threaded execution over elements that were just refined. More...
 
ConstElemPointerRangecoarsenedElementRange () const
 Return a range that is suitable for threaded execution over elements that were just coarsened. More...
 
const std::vector< const Elem * > & coarsenedElementChildren (const Elem *elem) const
 Get the newly removed children element ids for an element that was just coarsened. More...
 
void updateActiveSemiLocalNodeRange (std::set< dof_id_type > &ghosted_elems)
 Clears the "semi-local" node list and rebuilds it. More...
 
bool isSemiLocal (Node *const node) const
 Returns true if the node is semi-local. More...
 
const std::unordered_map< boundary_id_type, std::unordered_set< dof_id_type > > & getBoundariesToElems () const
 Returns a map of boundaries to ids of elements on the boundary. More...
 
const std::unordered_map< boundary_id_type, std::unordered_set< dof_id_type > > & getBoundariesToActiveSemiLocalElemIds () const
 Returns a map of boundaries to ids of elements on the boundary. More...
 
std::unordered_set< dof_id_typegetBoundaryActiveSemiLocalElemIds (BoundaryID bid) const
 Return all ids of elements which have a side which is part of a sideset. More...
 
std::unordered_set< dof_id_typegetBoundaryActiveNeighborElemIds (BoundaryID bid) const
 Return all ids of neighbors of elements which have a side which is part of a sideset. More...
 
bool isBoundaryFullyExternalToSubdomains (BoundaryID bid, const std::set< SubdomainID > &blk_group) const
 Returns whether a boundary (given by its id) is not crossing through a group of blocks, by which we mean that elements on both sides of the boundary are in those blocks. More...
 
const std::set< SubdomainID > & meshSubdomains () const
 Returns a read-only reference to the set of subdomains currently present in the Mesh. More...
 
const std::set< BoundaryID > & meshBoundaryIds () const
 Returns a read-only reference to the set of boundary IDs currently present in the Mesh. More...
 
const std::set< BoundaryID > & meshSidesetIds () const
 Returns a read-only reference to the set of sidesets currently present in the Mesh. More...
 
const std::set< BoundaryID > & meshNodesetIds () const
 Returns a read-only reference to the set of nodesets currently present in the Mesh. More...
 
void setBoundaryToNormalMap (std::unique_ptr< std::map< BoundaryID, RealVectorValue >> boundary_map)
 Sets the mapping between BoundaryID and normal vector Is called by AddAllSideSetsByNormals. More...
 
void setBoundaryToNormalMap (std::map< BoundaryID, RealVectorValue > *boundary_map)
 
void setMeshBoundaryIDs (std::set< BoundaryID > boundary_IDs)
 Sets the set of BoundaryIDs Is called by AddAllSideSetsByNormals. More...
 
const RealVectorValuegetNormalByBoundaryID (BoundaryID id) const
 Returns the normal vector associated with a given BoundaryID. More...
 
bool prepare (const MeshBase *mesh_to_clone)
 Calls prepare_for_use() if the underlying MeshBase object isn't prepared, then communicates various boundary information on parallel meshes. More...
 
void update ()
 Calls buildNodeListFromSideList(), buildNodeList(), and buildBndElemList(). More...
 
unsigned int uniformRefineLevel () const
 Returns the level of uniform refinement requested (zero if AMR is disabled). More...
 
void setUniformRefineLevel (unsigned int, bool deletion=true)
 Set uniform refinement level. More...
 
bool skipDeletionRepartitionAfterRefine () const
 Return a flag indicating whether or not we should skip remote deletion and repartition after uniform refinements. More...
 
bool skipRefineWhenUseSplit () const
 Whether or not skip uniform refinements when using a pre-split mesh. More...
 
void addGhostedBoundary (BoundaryID boundary_id)
 This will add the boundary ids to be ghosted to this processor. More...
 
void setGhostedBoundaryInflation (const std::vector< Real > &inflation)
 This sets the inflation amount for the bounding box for each partition for use in ghosting boundaries. More...
 
const std::set< unsigned int > & getGhostedBoundaries () const
 Return a writable reference to the set of ghosted boundary IDs. More...
 
const std::vector< Real > & getGhostedBoundaryInflation () const
 Return a writable reference to the _ghosted_boundaries_inflation vector. More...
 
void ghostGhostedBoundaries ()
 Actually do the ghosting of boundaries that need to be ghosted to this processor. More...
 
void needGhostGhostedBoundaries (bool needghost)
 Whether or not we want to ghost ghosted boundaries. More...
 
unsigned int getPatchSize () const
 Getter for the patch_size parameter. More...
 
unsigned int getGhostingPatchSize () const
 Getter for the ghosting_patch_size parameter. More...
 
unsigned int getMaxLeafSize () const
 Getter for the maximum leaf size parameter. More...
 
void setPatchUpdateStrategy (Moose::PatchUpdateType patch_update_strategy)
 Set the patch size update strategy. More...
 
const Moose::PatchUpdateTypegetPatchUpdateStrategy () const
 Get the current patch update strategy. More...
 
libMesh::BoundingBox getInflatedProcessorBoundingBox (Real inflation_multiplier=0.01) const
 Get a (slightly inflated) processor bounding box. More...
 
 operator libMesh::MeshBase & ()
 Implicit conversion operator from MooseMesh -> libMesh::MeshBase. More...
 
 operator const libMesh::MeshBase & () const
 
MeshBasegetMesh ()
 Accessor for the underlying libMesh Mesh object. More...
 
MeshBase & getMesh (const std::string &name)
 
const MeshBasegetMesh () const
 
const MeshBase & getMesh (const std::string &name) const
 
const MeshBasegetMeshPtr () const
 
void printInfo (std::ostream &os=libMesh::out, const unsigned int verbosity=0) const
 Calls print_info() on the underlying Mesh. More...
 
const std::set< SubdomainID > & getNodeBlockIds (const Node &node) const
 Return list of blocks to which the given node belongs. More...
 
const std::vector< dof_id_type > & getNodeList (boundary_id_type nodeset_id) const
 Return a writable reference to a vector of node IDs that belong to nodeset_id. More...
 
const NodeaddUniqueNode (const Point &p, Real tol=1e-6)
 Add a new node to the mesh. More...
 
NodeaddQuadratureNode (const Elem *elem, const unsigned short int side, const unsigned int qp, BoundaryID bid, const Point &point)
 Adds a fictitious "QuadratureNode". More...
 
NodegetQuadratureNode (const Elem *elem, const unsigned short int side, const unsigned int qp)
 Get a specified quadrature node. More...
 
void clearQuadratureNodes ()
 Clear out any existing quadrature nodes. More...
 
BoundaryID getBoundaryID (const BoundaryName &boundary_name) const
 Get the associated BoundaryID for the boundary name. More...
 
std::vector< BoundaryIDgetBoundaryIDs (const std::vector< BoundaryName > &boundary_name, bool generate_unknown=false) const
 Get the associated BoundaryID for the boundary names that are passed in. More...
 
SubdomainID getSubdomainID (const SubdomainName &subdomain_name) const
 Get the associated subdomain ID for the subdomain name. More...
 
std::vector< SubdomainIDgetSubdomainIDs (const std::vector< SubdomainName > &subdomain_names) const
 Get the associated subdomainIDs for the subdomain names that are passed in. More...
 
std::set< SubdomainIDgetSubdomainIDs (const std::set< SubdomainName > &subdomain_names) const
 
void setSubdomainName (SubdomainID subdomain_id, const SubdomainName &name)
 This method sets the name for subdomain_id to name. More...
 
const std::string & getSubdomainName (SubdomainID subdomain_id) const
 Return the name of a block given an id. More...
 
std::vector< SubdomainName > getSubdomainNames (const std::vector< SubdomainID > &subdomain_ids) const
 Get the associated subdomainNames for the subdomain ids that are passed in. More...
 
void setBoundaryName (BoundaryID boundary_id, BoundaryName name)
 This method sets the boundary name of the boundary based on the id parameter. More...
 
const std::string & getBoundaryName (BoundaryID boundary_id)
 Return the name of the boundary given the id. More...
 
void buildPeriodicNodeMap (std::multimap< dof_id_type, dof_id_type > &periodic_node_map, unsigned int var_number, libMesh::PeriodicBoundaries *pbs) const
 This routine builds a multimap of boundary ids to matching boundary ids across all periodic boundaries in the system. More...
 
void buildPeriodicNodeSets (std::map< BoundaryID, std::set< dof_id_type >> &periodic_node_sets, unsigned int var_number, libMesh::PeriodicBoundaries *pbs) const
 This routine builds a datastructure of node ids organized by periodic boundary ids. More...
 
Real dimensionWidth (unsigned int component) const
 Returns the width of the requested dimension. More...
 
bool detectOrthogonalDimRanges (Real tol=1e-6)
 This routine determines whether the Mesh is a regular orthogonal mesh (i.e. More...
 
void addPeriodicVariable (unsigned int var_num, BoundaryID primary, BoundaryID secondary)
 For "regular orthogonal" meshes, determine if variable var_num is periodic with respect to the primary and secondary BoundaryIDs, record this fact in the _periodic_dim data structure. More...
 
bool isTranslatedPeriodic (unsigned int nonlinear_var_num, unsigned int component) const
 Returns whether this generated mesh is periodic in the given dimension for the given variable. More...
 
RealVectorValue minPeriodicVector (unsigned int nonlinear_var_num, Point p, Point q) const
 This function returns the minimum vector between two points on the mesh taking into account periodicity for the given variable number. More...
 
Real minPeriodicDistance (unsigned int nonlinear_var_num, Point p, Point q) const
 This function returns the distance between two points on the mesh taking into account periodicity for the given variable number. More...
 
const std::pair< BoundaryID, BoundaryID > * getPairedBoundaryMapping (unsigned int component)
 This function attempts to return the paired boundary ids for the given component. More...
 
void buildRefinementAndCoarseningMaps (Assembly *assembly)
 Create the refinement and coarsening maps necessary for projection of stateful material properties when using adaptivity. More...
 
const std::vector< std::vector< QpMap > > & getRefinementMap (const Elem &elem, int parent_side, int child, int child_side)
 Get the refinement map for a given element type. More...
 
const std::vector< std::pair< unsigned int, QpMap > > & getCoarseningMap (const Elem &elem, int input_side)
 Get the coarsening map for a given element type. More...
 
void changeBoundaryId (const boundary_id_type old_id, const boundary_id_type new_id, bool delete_prev)
 Change all the boundary IDs for a given side from old_id to new_id. More...
 
const std::set< BoundaryID > & getSubdomainBoundaryIds (const SubdomainID subdomain_id) const
 Get the list of boundary ids associated with the given subdomain id. More...
 
std::set< BoundaryIDgetSubdomainInterfaceBoundaryIds (const SubdomainID subdomain_id) const
 Get the list of boundaries that contact the given subdomain. More...
 
std::set< SubdomainIDgetBoundaryConnectedBlocks (const BoundaryID bid) const
 Get the list of subdomains associated with the given boundary. More...
 
std::set< SubdomainIDgetBoundaryConnectedSecondaryBlocks (const BoundaryID bid) const
 Get the list of subdomains associated with the given boundary of its secondary side. More...
 
std::set< SubdomainIDgetInterfaceConnectedBlocks (const BoundaryID bid) const
 Get the list of subdomains contacting the given boundary. More...
 
const std::set< SubdomainID > & getBlockConnectedBlocks (const SubdomainID subdomain_id) const
 Get the list of subdomains neighboring a given subdomain. More...
 
bool isBoundaryNode (dof_id_type node_id) const
 Returns true if the requested node is in the list of boundary nodes, false otherwise. More...
 
bool isBoundaryNode (dof_id_type node_id, BoundaryID bnd_id) const
 Returns true if the requested node is in the list of boundary nodes for the specified boundary, false otherwise. More...
 
bool isBoundaryElem (dof_id_type elem_id) const
 Returns true if the requested element is in the list of boundary elements, false otherwise. More...
 
bool isBoundaryElem (dof_id_type elem_id, BoundaryID bnd_id) const
 Returns true if the requested element is in the list of boundary elements for the specified boundary, false otherwise. More...
 
void errorIfDistributedMesh (std::string name) const
 Generate a unified error message if the underlying libMesh mesh is a DistributedMesh. More...
 
virtual bool isDistributedMesh () const
 Returns the final Mesh distribution type. More...
 
bool isParallelTypeForced () const
 Tell the user if the distribution was overriden for any reason. More...
 
void setParallelType (ParallelType parallel_type)
 Allow to change parallel type. More...
 
ParallelType getParallelType () const
 
const MooseEnumpartitionerName () const
 
bool isPartitionerForced () const
 Tell the user if the partitioner was overriden for any reason. More...
 
void allowRecovery (bool allow)
 Set whether or not this mesh is allowed to read a recovery file. More...
 
void setCustomPartitioner (libMesh::Partitioner *partitioner)
 Setter for custom partitioner. More...
 
bool isRegularOrthogonal ()
 Getter to query if the mesh was detected to be regular and orthogonal. More...
 
bool hasSecondOrderElements ()
 check if the mesh has SECOND order elements More...
 
virtual std::unique_ptr< libMesh::PointLocatorBasegetPointLocator () const
 Proxy function to get a (sub)PointLocator from either the underlying libMesh mesh (default), or to allow derived meshes to return a custom point locator. More...
 
virtual std::string getFileName () const
 Returns the name of the mesh file read to produce this mesh if any or an empty string otherwise. More...
 
void needsRemoteElemDeletion (bool need_delete)
 Set whether we need to delete remote elements. More...
 
bool needsRemoteElemDeletion () const
 Whether we need to delete remote elements. More...
 
void allowRemoteElementRemoval (bool allow_removal)
 Set whether to allow remote element removal. More...
 
bool allowRemoteElementRemoval () const
 Whether we are allow remote element removal. More...
 
void deleteRemoteElements ()
 Delete remote elements. More...
 
bool hasMeshBase () const
 Whether mesh base object was constructed or not. More...
 
bool hasElementID (const std::string &id_name) const
 Whether mesh has an extra element integer with a given name. More...
 
unsigned int getElementIDIndex (const std::string &id_name) const
 Return the accessing integer for an extra element integer with its name. More...
 
dof_id_type maxElementID (unsigned int elem_id_index) const
 Return the maximum element ID for an extra element integer with its accessing index. More...
 
dof_id_type minElementID (unsigned int elem_id_index) const
 Return the minimum element ID for an extra element integer with its accessing index. More...
 
bool areElemIDsIdentical (const std::string &id_name1, const std::string &id_name2) const
 Whether or not two extra element integers are identical. More...
 
std::set< dof_id_typegetAllElemIDs (unsigned int elem_id_index) const
 Return all the unique element IDs for an extra element integer with its index. More...
 
std::set< dof_id_typegetElemIDsOnBlocks (unsigned int elem_id_index, const std::set< SubdomainID > &blks) const
 Return all the unique element IDs for an extra element integer with its index on a set of subdomains. More...
 
std::unordered_map< dof_id_type, std::set< dof_id_type > > getElemIDMapping (const std::string &from_id_name, const std::string &to_id_name) const
 
void cacheFaceInfoVariableOwnership () const
 Cache if variables live on the elements connected by the FaceInfo objects. More...
 
void cacheFVElementalDoFs () const
 Cache the DoF indices for FV variables on each element. More...
 
void computeFiniteVolumeCoords () const
 Compute the face coordinate value for all FaceInfo and ElemInfo objects. More...
 
void isDisplaced (bool is_displaced)
 Set whether this mesh is a displaced mesh. More...
 
bool isDisplaced () const
 whether this mesh is a displaced mesh More...
 
const std::map< boundary_id_type, std::vector< dof_id_type > > & nodeSetNodes () const
 
Moose::CoordinateSystemType getCoordSystem (SubdomainID sid) const
 Get the coordinate system type, e.g. More...
 
Moose::CoordinateSystemType getUniqueCoordSystem () const
 Get the coordinate system from the mesh, it must be the same in all subdomains otherwise this will error. More...
 
const std::map< SubdomainID, Moose::CoordinateSystemType > & getCoordSystem () const
 Get the map from subdomain ID to coordinate system type, e.g. More...
 
void setCoordSystem (const std::vector< SubdomainName > &blocks, const MultiMooseEnum &coord_sys)
 Set the coordinate system for the provided blocks to coord_sys. More...
 
void setAxisymmetricCoordAxis (const MooseEnum &rz_coord_axis)
 For axisymmetric simulations, set the symmetry coordinate axis. More...
 
void setGeneralAxisymmetricCoordAxes (const std::vector< SubdomainName > &blocks, const std::vector< std::pair< Point, RealVectorValue >> &axes)
 Sets the general coordinate axes for axisymmetric blocks. More...
 
const std::pair< Point, RealVectorValue > & getGeneralAxisymmetricCoordAxis (SubdomainID subdomain_id) const
 Gets the general axisymmetric coordinate axis for a block. More...
 
bool usingGeneralAxisymmetricCoordAxes () const
 Returns true if general axisymmetric coordinate axes are being used. More...
 
unsigned int getAxisymmetricRadialCoord () const
 Returns the desired radial direction for RZ coordinate transformation. More...
 
void checkCoordinateSystems ()
 Performs a sanity check for every element in the mesh. More...
 
void setCoordData (const MooseMesh &other_mesh)
 Set the coordinate system data to that of other_mesh. More...
 
void markFiniteVolumeInfoDirty ()
 Mark the finite volume information as dirty. More...
 
bool isFiniteVolumeInfoDirty () const
 
MooseAppCoordTransformcoordTransform ()
 
const MooseUnitslengthUnit () const
 
const std::unordered_map< std::pair< const Elem *, unsigned short int >, const Elem * > & getLowerDElemMap () const
 This function attempts to return the map from a high-order element side to its corresponding lower-d element. More...
 
bool isSplit () const
 
void buildFiniteVolumeInfo () const
 Builds the face and elem info vectors that store meta-data needed for looping over and doing calculations based on mesh faces and elements in a finite volume setting. More...
 
void setupFiniteVolumeMeshData () const
 Sets up the additional data needed for finite volume computations. More...
 
void doingPRefinement (bool doing_p_refinement)
 Indicate whether the kind of adaptivity we're doing is p-refinement. More...
 
bool doingPRefinement () const
 Query whether we have p-refinement. More...
 
unsigned int maxPLevel () const
 Returns the maximum p-refinement level of all elements. More...
 
unsigned int maxHLevel () const
 Returns the maximum h-refinement level of all elements. More...
 
const std::vector< QpMap > & getPRefinementMap (const Elem &elem) const
 Get the map describing for each volumetric quadrature point (qp) on the refined level which qp on the previous coarser level the fine qp is closest to. More...
 
const std::vector< QpMap > & getPRefinementSideMap (const Elem &elem) const
 Get the map describing for each side quadrature point (qp) on the refined level which qp on the previous coarser level the fine qp is closest to. More...
 
const std::vector< QpMap > & getPCoarseningMap (const Elem &elem) const
 Get the map describing for each volumetric quadrature point (qp) on the coarse level which qp on the previous finer level the coarse qp is closest to. More...
 
const std::vector< QpMap > & getPCoarseningSideMap (const Elem &elem) const
 Get the map describing for each side quadrature point (qp) on the coarse level which qp on the previous finer level the coarse qp is closest to. More...
 
void buildPRefinementAndCoarseningMaps (Assembly *assembly)
 
bool isLowerD (const SubdomainID subdomain_id) const
 
bool hasLowerD () const
 
const std::set< SubdomainID > & interiorLowerDBlocks () const
 
const std::set< SubdomainID > & boundaryLowerDBlocks () const
 
bool getConstructNodeListFromSideList ()
 Return construct node list from side list boolean. More...
 
virtual bool enabled () const
 Return the enabled status of the object. More...
 
std::shared_ptr< MooseObjectgetSharedPtr ()
 Get another shared pointer to this object that has the same ownership group. More...
 
std::shared_ptr< const MooseObjectgetSharedPtr () const
 
MooseAppgetMooseApp () const
 Get the MooseApp this class is associated with. More...
 
const std::string & type () const
 Get the type of this class. More...
 
virtual const std::string & name () const
 Get the name of the class. More...
 
std::string typeAndName () const
 Get the class's combined type and name; useful in error handling. More...
 
std::string errorPrefix (const std::string &error_type) const
 
void callMooseError (std::string msg, const bool with_prefix) const
 Calls moose error with the message msg. More...
 
MooseObjectParameterName uniqueParameterName (const std::string &parameter_name) const
 The unique parameter name of a valid parameter of this object for accessing parameter controls. More...
 
const InputParametersparameters () const
 Get the parameters of the object. More...
 
MooseObjectName uniqueName () const
 The unique name for accessing input parameters of this object in the InputParameterWarehouse. More...
 
template<typename T >
const T & getParam (const std::string &name) const
 Retrieve a parameter for the object. More...
 
template<typename T1 , typename T2 >
std::vector< std::pair< T1, T2 > > getParam (const std::string &param1, const std::string &param2) const
 Retrieve two parameters and provide pair of parameters for the object. More...
 
template<typename T >
const T * queryParam (const std::string &name) const
 Query a parameter for the object. More...
 
template<typename T >
const T & getRenamedParam (const std::string &old_name, const std::string &new_name) const
 Retrieve a renamed parameter for the object. More...
 
template<typename T >
getCheckedPointerParam (const std::string &name, const std::string &error_string="") const
 Verifies that the requested parameter exists and is not NULL and returns it to the caller. More...
 
bool isParamValid (const std::string &name) const
 Test if the supplied parameter is valid. More...
 
bool isParamSetByUser (const std::string &nm) const
 Test if the supplied parameter is set by a user, as opposed to not set or set to default. More...
 
template<typename... Args>
void paramError (const std::string &param, Args... args) const
 Emits an error prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message. More...
 
template<typename... Args>
void paramWarning (const std::string &param, Args... args) const
 Emits a warning prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message. More...
 
template<typename... Args>
void paramInfo (const std::string &param, Args... args) const
 Emits an informational message prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message. More...
 
void connectControllableParams (const std::string &parameter, const std::string &object_type, const std::string &object_name, const std::string &object_parameter) const
 Connect controllable parameter of this action with the controllable parameters of the objects added by this action. More...
 
template<typename... Args>
void mooseError (Args &&... args) const
 Emits an error prefixed with object name and type. More...
 
template<typename... Args>
void mooseErrorNonPrefixed (Args &&... args) const
 Emits an error without the prefixing included in mooseError(). More...
 
template<typename... Args>
void mooseDocumentedError (const std::string &repo_name, const unsigned int issue_num, Args &&... args) const
 Emits a documented error with object name and type. More...
 
template<typename... Args>
void mooseWarning (Args &&... args) const
 Emits a warning prefixed with object name and type. More...
 
template<typename... Args>
void mooseWarningNonPrefixed (Args &&... args) const
 Emits a warning without the prefixing included in mooseWarning(). More...
 
template<typename... Args>
void mooseDeprecated (Args &&... args) const
 
template<typename... Args>
void mooseInfo (Args &&... args) const
 
const Parallel::Communicatorcomm () const
 
processor_id_type n_processors () const
 
processor_id_type processor_id () const
 
std::string getDataFileName (const std::string &param) const
 Deprecated method. More...
 
std::string getDataFileNameByName (const std::string &relative_path) const
 Deprecated method. More...
 
std::string getDataFilePath (const std::string &relative_path) const
 Returns the path of a data file for a given relative file path. More...
 
PerfGraphperfGraph ()
 Get the PerfGraph. More...
 
libMesh::ConstElemRangegetActiveLocalElementRange ()
 Return pointers to range objects for various types of ranges (local nodes, boundary elems, etc.). More...
 
libMesh::NodeRangegetActiveNodeRange ()
 
SemiLocalNodeRangegetActiveSemiLocalNodeRange () const
 
libMesh::ConstNodeRangegetLocalNodeRange ()
 
libMesh::StoredRange< MooseMesh::const_bnd_node_iterator, const BndNode * > * getBoundaryNodeRange ()
 
libMesh::StoredRange< MooseMesh::const_bnd_elem_iterator, const BndElement * > * getBoundaryElementRange ()
 
virtual Real getMinInDimension (unsigned int component) const
 Returns the min or max of the requested dimension respectively. More...
 
virtual Real getMaxInDimension (unsigned int component) const
 
bool isCustomPartitionerRequested () const
 Setter and getter for _custom_partitioner_requested. More...
 
void setIsCustomPartitionerRequested (bool cpr)
 
unsigned int nFace () const
 accessors for the FaceInfo objects More...
 
const std::vector< const FaceInfo * > & faceInfo () const
 Accessor for local FaceInfo objects. More...
 
face_info_iterator ownedFaceInfoBegin ()
 Iterators to owned faceInfo objects. More...
 
face_info_iterator ownedFaceInfoEnd ()
 
elem_info_iterator ownedElemInfoBegin ()
 Iterators to owned faceInfo objects. More...
 
elem_info_iterator ownedElemInfoEnd ()
 
const FaceInfofaceInfo (const Elem *elem, unsigned int side) const
 Accessor for the local FaceInfo object on the side of one element. Returns null if ghosted. More...
 
const ElemInfoelemInfo (const dof_id_type id) const
 Accessor for the elemInfo object for a given element ID. More...
 
const std::vector< const ElemInfo * > & elemInfoVector () const
 Accessor for the element info objects owned by this process. More...
 
const std::vector< FaceInfo > & allFaceInfo () const
 Accessor for all FaceInfo objects. More...
 

Static Public Member Functions

static InputParameters validParams ()
 Typical "Moose-style" constructor and copy constructor. More...
 
static MooseEnum partitioning ()
 returns MooseMesh partitioning options so other classes can use it More...
 
static MooseEnum elemTypes ()
 returns MooseMesh element type options More...
 
static void setSubdomainName (MeshBase &mesh, SubdomainID subdomain_id, const SubdomainName &name)
 This method sets the name for subdomain_id on the provided mesh to name. More...
 
static void changeBoundaryId (MeshBase &mesh, const boundary_id_type old_id, const boundary_id_type new_id, bool delete_prev)
 Change all the boundary IDs for a given side from old_id to new_id for the given mesh. More...
 
static void setPartitioner (MeshBase &mesh_base, MooseEnum &partitioner, bool use_distributed_mesh, const InputParameters &params, MooseObject &context_obj)
 Method for setting the partitioner on the passed in mesh_base object. More...
 

Public Attributes

const ConsoleStream _console
 An instance of helper class to write streams to the Console objects. More...
 

Protected Types

enum  { X = 0, Y, Z }
 Convenience enums. More...
 
enum  { MIN = 0, MAX }
 
typedef std::vector< BndNode * >::iterator bnd_node_iterator_imp
 
typedef std::vector< BndNode * >::const_iterator const_bnd_node_iterator_imp
 
typedef std::vector< BndElement * >::iterator bnd_elem_iterator_imp
 
typedef std::vector< BndElement * >::const_iterator const_bnd_elem_iterator_imp
 

Protected Member Functions

void cacheInfo ()
 
void freeBndNodes ()
 
void freeBndElems ()
 
void setPartitionerHelper (MeshBase *mesh=nullptr)
 
template<typename T , typename... Args>
T & declareRestartableData (const std::string &data_name, Args &&... args)
 Declare a piece of data as "restartable" and initialize it. More...
 
template<typename T , typename... Args>
ManagedValue< T > declareManagedRestartableDataWithContext (const std::string &data_name, void *context, Args &&... args)
 Declares a piece of "managed" restartable data and initialize it. More...
 
template<typename T , typename... Args>
const T & getRestartableData (const std::string &data_name) const
 Declare a piece of data as "restartable" and initialize it Similar to declareRestartableData but returns a const reference to the object. More...
 
template<typename T , typename... Args>
T & declareRestartableDataWithContext (const std::string &data_name, void *context, Args &&... args)
 Declare a piece of data as "restartable" and initialize it. More...
 
template<typename T , typename... Args>
T & declareRecoverableData (const std::string &data_name, Args &&... args)
 Declare a piece of data as "recoverable" and initialize it. More...
 
template<typename T , typename... Args>
T & declareRestartableDataWithObjectName (const std::string &data_name, const std::string &object_name, Args &&... args)
 Declare a piece of data as "restartable". More...
 
template<typename T , typename... Args>
T & declareRestartableDataWithObjectNameWithContext (const std::string &data_name, const std::string &object_name, void *context, Args &&... args)
 Declare a piece of data as "restartable". More...
 
std::string restartableName (const std::string &data_name) const
 Gets the name of a piece of restartable data given a data name, adding the system name and object name prefix. More...
 
PerfID registerTimedSection (const std::string &section_name, const unsigned int level) const
 Call to register a named section for timing. More...
 
PerfID registerTimedSection (const std::string &section_name, const unsigned int level, const std::string &live_message, const bool print_dots=true) const
 Call to register a named section for timing. More...
 
std::string timedSectionName (const std::string &section_name) const
 

Protected Attributes

std::vector< std::unique_ptr< libMesh::GhostingFunctor > > _ghosting_functors
 Deprecated (DO NOT USE) More...
 
std::vector< std::shared_ptr< RelationshipManager > > _relationship_managers
 The list of active geometric relationship managers (bound to the underlying MeshBase object). More...
 
bool _built_from_other_mesh = false
 Whether or not this mesh was built from another mesh. More...
 
ParallelType _parallel_type
 Can be set to DISTRIBUTED, REPLICATED, or DEFAULT. More...
 
bool _use_distributed_mesh
 False by default. More...
 
bool _distribution_overridden
 
bool _parallel_type_overridden
 
std::unique_ptr< libMesh::MeshBase_mesh
 Pointer to underlying libMesh mesh object. More...
 
MooseEnum _partitioner_name
 The partitioner used on this mesh. More...
 
bool _partitioner_overridden
 
std::unique_ptr< libMesh::Partitioner_custom_partitioner
 The custom partitioner. More...
 
bool _custom_partitioner_requested
 
unsigned int _uniform_refine_level
 The level of uniform refinement requested (set to zero if AMR is disabled) More...
 
bool _skip_refine_when_use_split
 Whether or not to skip uniform refinements when using a pre-split mesh. More...
 
bool _skip_deletion_repartition_after_refine
 Whether or not skip remote deletion and repartition after uniform refinements. More...
 
bool _is_changed
 true if mesh is changed (i.e. after adaptivity step) More...
 
bool _is_nemesis
 True if a Nemesis Mesh was read in. More...
 
bool _moose_mesh_prepared = false
 True if prepare has been called on the mesh. More...
 
std::unique_ptr< ConstElemPointerRange_refined_elements
 The elements that were just refined. More...
 
std::unique_ptr< ConstElemPointerRange_coarsened_elements
 The elements that were just coarsened. More...
 
std::map< const Elem *, std::vector< const Elem * > > _coarsened_element_children
 Map of Parent elements to child elements for elements that were just coarsened. More...
 
std::set< Node * > _semilocal_node_list
 Used for generating the semilocal node range. More...
 
std::unique_ptr< libMesh::ConstElemRange_active_local_elem_range
 A range for use with threading. More...
 
std::unique_ptr< SemiLocalNodeRange_active_semilocal_node_range
 
std::unique_ptr< libMesh::NodeRange_active_node_range
 
std::unique_ptr< libMesh::ConstNodeRange_local_node_range
 
std::unique_ptr< libMesh::StoredRange< MooseMesh::const_bnd_node_iterator, const BndNode * > > _bnd_node_range
 
std::unique_ptr< libMesh::StoredRange< MooseMesh::const_bnd_elem_iterator, const BndElement * > > _bnd_elem_range
 
std::map< dof_id_type, std::vector< dof_id_type > > _node_to_elem_map
 A map of all of the current nodes to the elements that they are connected to. More...
 
bool _node_to_elem_map_built
 
std::map< dof_id_type, std::vector< dof_id_type > > _node_to_active_semilocal_elem_map
 A map of all of the current nodes to the active elements that they are connected to. More...
 
bool _node_to_active_semilocal_elem_map_built
 
std::set< SubdomainID_mesh_subdomains
 A set of subdomain IDs currently present in the mesh. More...
 
std::unique_ptr< std::map< BoundaryID, RealVectorValue > > _boundary_to_normal_map
 The boundary to normal map - valid only when AddAllSideSetsByNormals is active. More...
 
std::vector< BndNode * > _bnd_nodes
 array of boundary nodes More...
 
std::map< boundary_id_type, std::set< dof_id_type > > _bnd_node_ids
 Map of sets of node IDs in each boundary. More...
 
std::vector< BndElement * > _bnd_elems
 array of boundary elems More...
 
std::unordered_map< boundary_id_type, std::unordered_set< dof_id_type > > _bnd_elem_ids
 Map of set of elem IDs connected to each boundary. More...
 
std::map< dof_id_type, Node * > _quadrature_nodes
 
std::map< dof_id_type, std::map< unsigned int, std::map< dof_id_type, Node * > > > _elem_to_side_to_qp_to_quadrature_nodes
 
std::vector< BndNode_extra_bnd_nodes
 
std::map< dof_id_type, std::set< SubdomainID > > _block_node_list
 list of nodes that belongs to a specified block (domain) More...
 
std::map< boundary_id_type, std::vector< dof_id_type > > _node_set_nodes
 list of nodes that belongs to a specified nodeset: indexing [nodeset_id] -> [array of node ids] More...
 
std::set< unsigned int_ghosted_boundaries
 
std::vector< Real_ghosted_boundaries_inflation
 
unsigned int _patch_size
 The number of nodes to consider in the NearestNode neighborhood. More...
 
unsigned int _ghosting_patch_size
 The number of nearest neighbors to consider for ghosting purposes when iteration patch update strategy is used. More...
 
unsigned int _max_leaf_size
 
Moose::PatchUpdateType _patch_update_strategy
 The patch update strategy. More...
 
std::vector< Node * > _node_map
 Vector of all the Nodes in the mesh for determining when to add a new point. More...
 
bool _regular_orthogonal_mesh
 Boolean indicating whether this mesh was detected to be regular and orthogonal. More...
 
std::vector< std::vector< Real > > _bounds
 The bounds in each dimension of the mesh for regular orthogonal meshes. More...
 
std::vector< std::pair< BoundaryID, BoundaryID > > _paired_boundary
 A vector holding the paired boundaries for a regular orthogonal mesh. More...
 
const bool _is_split
 Whether or not we are using a (pre-)split mesh (automatically DistributedMesh) More...
 
const bool & _enabled
 Reference to the "enable" InputParameters, used by Controls for toggling on/off MooseObjects. More...
 
MooseApp_app
 The MOOSE application this is associated with. More...
 
const std::string _type
 The type of this class. More...
 
const std::string _name
 The name of this class. More...
 
const InputParameters_pars
 Parameters of this object, references the InputParameters stored in the InputParametersWarehouse. More...
 
Factory_factory
 The Factory associated with the MooseApp. More...
 
ActionFactory_action_factory
 Builds Actions. More...
 
const Parallel::Communicator_communicator
 
MooseApp_restartable_app
 Reference to the application. More...
 
const std::string _restartable_system_name
 The system name this object is in. More...
 
const THREAD_ID _restartable_tid
 The thread ID for this object. More...
 
const bool _restartable_read_only
 Flag for toggling read only status (see ReporterData) More...
 
MooseApp_pg_moose_app
 The MooseApp that owns the PerfGraph. More...
 
const std::string _prefix
 A prefix to use for all sections. More...
 
std::set< BoundaryID_mesh_boundary_ids
 A set of boundary IDs currently present in the mesh. More...
 
std::set< BoundaryID_mesh_sideset_ids
 
std::set< BoundaryID_mesh_nodeset_ids
 

Private Member Functions

void detectPairedSidesets ()
 This routine detects paired sidesets of a regular orthogonal mesh (.i.e. More...
 
void buildRefinementMap (const Elem &elem, libMesh::QBase &qrule, libMesh::QBase &qrule_face, int parent_side, int child, int child_side)
 Build the refinement map for a given element type. More...
 
void buildCoarseningMap (const Elem &elem, libMesh::QBase &qrule, libMesh::QBase &qrule_face, int input_side)
 Build the coarsening map for a given element type. More...
 
void mapPoints (const std::vector< Point > &from, const std::vector< Point > &to, std::vector< QpMap > &qp_map)
 Find the closest points that map "from" to "to" and fill up "qp_map". More...
 
void findAdaptivityQpMaps (const Elem *template_elem, libMesh::QBase &qrule, libMesh::QBase &qrule_face, std::vector< std::vector< QpMap >> &refinement_map, std::vector< std::pair< unsigned int, QpMap >> &coarsen_map, int parent_side, int child, int child_side)
 Given an elem type, get maps that tell us what qp's are closest to each other between a parent and it's children. More...
 
void buildHRefinementAndCoarseningMaps (Assembly *assembly)
 
const std::vector< QpMap > & getPRefinementMapHelper (const Elem &elem, const std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap >> &) const
 
const std::vector< QpMap > & getPCoarseningMapHelper (const Elem &elem, const std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap >> &) const
 
void updateCoordTransform ()
 Update the coordinate transformation object based on our coordinate system data. More...
 
void checkDuplicateSubdomainNames ()
 Loop through all subdomain IDs and check if there is name duplication used for the subdomains with same ID. More...
 
void buildElemIDInfo ()
 Build extra data for faster access to the information of extra element integers. More...
 
void buildLowerDMesh ()
 Build lower-d mesh for all sides. More...
 

Private Attributes

std::unordered_map< dof_id_type, ElemInfo_elem_to_elem_info
 Map connecting elems with their corresponding ElemInfo, we use the element ID as the key. More...
 
std::vector< const ElemInfo * > _elem_info
 Holds only those ElemInfo objects that have processor_id equal to this process's id, e.g. More...
 
std::vector< FaceInfo_all_face_info
 FaceInfo object storing information for face based loops. More...
 
std::vector< const FaceInfo * > _face_info
 Holds only those FaceInfo objects that have processor_id equal to this process's id, e.g. More...
 
std::unordered_map< std::pair< const Elem *, unsigned int >, FaceInfo * > _elem_side_to_face_info
 Map from elem-side pair to FaceInfo. More...
 
bool _finite_volume_info_dirty = true
 
bool _linear_finite_volume_dofs_cached = false
 
std::map< unsigned int, std::vector< bool > > _periodic_dim
 A map of vectors indicating which dimensions are periodic in a regular orthogonal mesh for the specified variable numbers. More...
 
RealVectorValue _half_range
 A convenience vector used to hold values in each dimension representing half of the range. More...
 
std::vector< Node * > _extreme_nodes
 A vector containing the nodes at the corners of a regular orthogonal mesh. More...
 
std::map< std::pair< int, libMesh::ElemType >, std::vector< std::vector< QpMap > > > _elem_type_to_refinement_map
 Holds mappings for volume to volume and parent side to child side Map key: More...
 
std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap > > _elem_type_to_p_refinement_map
 
std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap > > _elem_type_to_p_refinement_side_map
 
std::map< libMesh::ElemType, std::map< std::pair< int, int >, std::vector< std::vector< QpMap > > > > _elem_type_to_child_side_refinement_map
 Holds mappings for "internal" child sides to parent volume. The second key is (child, child_side). More...
 
std::map< std::pair< int, libMesh::ElemType >, std::vector< std::pair< unsigned int, QpMap > > > _elem_type_to_coarsening_map
 Holds mappings for volume to volume and parent side to child side Map key: More...
 
std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap > > _elem_type_to_p_coarsening_map
 
std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap > > _elem_type_to_p_coarsening_side_map
 
std::unordered_map< SubdomainID, SubdomainData_sub_to_data
 Holds a map from subdomain ids to associated data. More...
 
std::unordered_map< SubdomainID, std::set< BoundaryID > > _neighbor_subdomain_boundary_ids
 Holds a map from neighbor subomdain ids to the boundary ids that are attached to it. More...
 
std::set< SubdomainID_lower_d_interior_blocks
 Mesh blocks for interior lower-d elements in different types. More...
 
std::set< SubdomainID_lower_d_boundary_blocks
 Mesh blocks for boundary lower-d elements in different types. More...
 
std::unordered_map< std::pair< const Elem *, unsigned short int >, const Elem * > _higher_d_elem_side_to_lower_d_elem
 Holds a map from a high-order element side to its corresponding lower-d element. More...
 
std::unordered_map< const Elem *, unsigned short int_lower_d_elem_to_higher_d_elem_side
 
bool _has_lower_d
 Whether there are any lower-dimensional blocks that are manifolds of higher-dimensional block faces. More...
 
bool _allow_recovery
 Whether or not this Mesh is allowed to read a recovery file. More...
 
bool _construct_node_list_from_side_list
 Whether or not to allow generation of nodesets from sidesets. More...
 
bool _need_delete
 Whether we need to delete remote elements after init'ing the EquationSystems. More...
 
bool _allow_remote_element_removal
 Whether to allow removal of remote elements. More...
 
std::set< Elem * > _ghost_elems_from_ghost_boundaries
 Set of elements ghosted by ghostGhostedBoundaries. More...
 
bool _need_ghost_ghosted_boundaries
 A parallel mesh generator such as DistributedRectilinearMeshGenerator already make everything ready. More...
 
std::vector< std::unordered_map< SubdomainID, std::set< dof_id_type > > > _block_id_mapping
 Unique element integer IDs for each subdomain and each extra element integers. More...
 
std::vector< dof_id_type_max_ids
 Maximum integer ID for each extra element integer. More...
 
std::vector< dof_id_type_min_ids
 Minimum integer ID for each extra element integer. More...
 
std::vector< std::vector< bool > > _id_identical_flag
 Flags to indicate whether or not any two extra element integers are the same. More...
 
bool _is_displaced
 Whether this mesh is displaced. More...
 
std::map< SubdomainID, Moose::CoordinateSystemType > & _coord_sys
 Type of coordinate system per subdomain. More...
 
unsigned int _rz_coord_axis
 Storage for RZ axis selection. More...
 
std::unordered_map< SubdomainID, std::pair< Point, RealVectorValue > > _subdomain_id_to_rz_coord_axis
 Map of subdomain ID to general axisymmetric axis. More...
 
std::unique_ptr< MooseAppCoordTransform_coord_transform
 A coordinate transformation object that describes how to transform this problem's coordinate system into the canonical/reference coordinate system. More...
 
bool _coord_system_set
 Whether the coordinate system has been set. More...
 
std::vector< SubdomainName > _provided_coord_blocks
 Set for holding user-provided coordinate system type block names. More...
 
bool _doing_p_refinement
 Whether we have p-refinement (as opposed to h-refinement) More...
 
unsigned int _max_p_level
 Maximum p-refinement level of all elements. More...
 
unsigned int _max_h_level
 Maximum h-refinement level of all elements. More...
 

Detailed Description

MooseMesh wraps a libMesh::Mesh object and enhances its capabilities by caching additional data and storing more state.

Definition at line 88 of file MooseMesh.h.

Member Typedef Documentation

◆ bnd_elem_iterator_imp

typedef std::vector<BndElement *>::iterator MooseMesh::bnd_elem_iterator_imp
protected

Definition at line 1541 of file MooseMesh.h.

◆ bnd_node_iterator_imp

typedef std::vector<BndNode *>::iterator MooseMesh::bnd_node_iterator_imp
protected

Definition at line 1534 of file MooseMesh.h.

◆ const_bnd_elem_iterator_imp

typedef std::vector<BndElement *>::const_iterator MooseMesh::const_bnd_elem_iterator_imp
protected

Definition at line 1542 of file MooseMesh.h.

◆ const_bnd_node_iterator_imp

typedef std::vector<BndNode *>::const_iterator MooseMesh::const_bnd_node_iterator_imp
protected

Definition at line 1535 of file MooseMesh.h.

◆ DataFileParameterType

using DataFileInterface::DataFileParameterType = DataFileName
inherited

The parameter type this interface expects for a data file name.

Definition at line 27 of file DataFileInterface.h.

◆ PeriodicNodeInfo

using MooseMesh::PeriodicNodeInfo = std::pair<const Node *, BoundaryID>

Helper type for building periodic node maps.

Definition at line 1074 of file MooseMesh.h.

Member Enumeration Documentation

◆ anonymous enum

anonymous enum
protected

Convenience enums.

Enumerator

Definition at line 1444 of file MooseMesh.h.

1445  {
1446  X = 0,
1447  Y,
1448  Z
1449  };

◆ anonymous enum

anonymous enum
protected
Enumerator
MIN 
MAX 

Definition at line 1450 of file MooseMesh.h.

1451  {
1452  MIN = 0,
1453  MAX
1454  };

◆ ParallelType

Enumerator
DEFAULT 
REPLICATED 
DISTRIBUTED 

Definition at line 104 of file MooseMesh.h.

105  {
106  DEFAULT,
107  REPLICATED,
108  DISTRIBUTED
109  };

Constructor & Destructor Documentation

◆ MooseMesh() [1/3]

MooseMesh::MooseMesh ( const InputParameters parameters)

Definition at line 226 of file MooseMesh.C.

228  Restartable(this, "Mesh"),
229  PerfGraphInterface(this),
230  _parallel_type(getParam<MooseEnum>("parallel_type").getEnum<MooseMesh::ParallelType>()),
231  _use_distributed_mesh(false),
234  _mesh(nullptr),
235  _partitioner_name(getParam<MooseEnum>("partitioner")),
239  _skip_refine_when_use_split(getParam<bool>("skip_refine_when_use_split")),
241  _is_nemesis(getParam<bool>("nemesis")),
244  _patch_size(getParam<unsigned int>("patch_size")),
245  _ghosting_patch_size(isParamValid("ghosting_patch_size")
246  ? getParam<unsigned int>("ghosting_patch_size")
247  : 5 * _patch_size),
248  _max_leaf_size(getParam<unsigned int>("max_leaf_size")),
250  getParam<MooseEnum>("patch_update_strategy").getEnum<Moose::PatchUpdateType>()),
252  _is_split(getParam<bool>("_is_split")),
253  _has_lower_d(false),
254  _allow_recovery(true),
255  _construct_node_list_from_side_list(getParam<bool>("construct_node_list_from_side_list")),
256  _need_delete(false),
259  _is_displaced(false),
260  _coord_sys(
261  declareRestartableData<std::map<SubdomainID, Moose::CoordinateSystemType>>("coord_sys")),
262  _rz_coord_axis(getParam<MooseEnum>("rz_coord_axis")),
263  _coord_system_set(false),
264  _doing_p_refinement(false)
265 {
266  if (isParamValid("ghosting_patch_size") && (_patch_update_strategy != Moose::Iteration))
267  mooseError("Ghosting patch size parameter has to be set in the mesh block "
268  "only when 'iteration' patch update strategy is used.");
269 
270  if (isParamValid("coord_block"))
271  {
272  if (isParamValid("block"))
273  paramWarning("block",
274  "You set both 'Mesh/block' and 'Mesh/coord_block'. The value of "
275  "'Mesh/coord_block' will be used.");
276 
277  _provided_coord_blocks = getParam<std::vector<SubdomainName>>("coord_block");
278  }
279  else if (isParamValid("block"))
280  _provided_coord_blocks = getParam<std::vector<SubdomainName>>("block");
281 
282  if (getParam<bool>("build_all_side_lowerd_mesh"))
283  // Do not initially allow removal of remote elements
285 
287 }
ParallelType _parallel_type
Can be set to DISTRIBUTED, REPLICATED, or DEFAULT.
Definition: MooseMesh.h:1423
bool _node_to_elem_map_built
Definition: MooseMesh.h:1506
bool allowRemoteElementRemoval() const
Whether we are allow remote element removal.
Definition: MooseMesh.h:1094
bool _is_nemesis
True if a Nemesis Mesh was read in.
Definition: MooseMesh.h:1469
std::vector< SubdomainName > _provided_coord_blocks
Set for holding user-provided coordinate system type block names.
Definition: MooseMesh.h:1874
bool _need_ghost_ghosted_boundaries
A parallel mesh generator such as DistributedRectilinearMeshGenerator already make everything ready...
Definition: MooseMesh.h:1837
unsigned int _uniform_refine_level
The level of uniform refinement requested (set to zero if AMR is disabled)
Definition: MooseMesh.h:1457
unsigned int _max_leaf_size
Definition: MooseMesh.h:1568
std::map< SubdomainID, Moose::CoordinateSystemType > & _coord_sys
Type of coordinate system per subdomain.
Definition: MooseMesh.h:1858
bool _custom_partitioner_requested
Definition: MooseMesh.h:1441
bool _doing_p_refinement
Whether we have p-refinement (as opposed to h-refinement)
Definition: MooseMesh.h:1877
void determineUseDistributedMesh()
Determine whether to use a distributed mesh.
Definition: MooseMesh.C:2823
MooseObject(const InputParameters &parameters)
Definition: MooseObject.C:48
bool _has_lower_d
Whether there are any lower-dimensional blocks that are manifolds of higher-dimensional block faces...
Definition: MooseMesh.h:1816
T & declareRestartableData(const std::string &data_name, Args &&... args)
Declare a piece of data as "restartable" and initialize it.
Definition: Restartable.h:269
MooseEnum _partitioner_name
The partitioner used on this mesh.
Definition: MooseMesh.h:1436
bool _node_to_active_semilocal_elem_map_built
Definition: MooseMesh.h:1510
bool _skip_refine_when_use_split
Whether or not to skip uniform refinements when using a pre-split mesh.
Definition: MooseMesh.h:1460
bool _allow_recovery
Whether or not this Mesh is allowed to read a recovery file.
Definition: MooseMesh.h:1819
bool isParamValid(const std::string &name) const
Test if the supplied parameter is valid.
bool _use_distributed_mesh
False by default.
Definition: MooseMesh.h:1428
bool _allow_remote_element_removal
Whether to allow removal of remote elements.
Definition: MooseMesh.h:1828
bool _construct_node_list_from_side_list
Whether or not to allow generation of nodesets from sidesets.
Definition: MooseMesh.h:1822
const T & getParam(const std::string &name) const
Retrieve a parameter for the object.
const bool _is_split
Whether or not we are using a (pre-)split mesh (automatically DistributedMesh)
Definition: MooseMesh.h:1586
bool _coord_system_set
Whether the coordinate system has been set.
Definition: MooseMesh.h:1871
bool _parallel_type_overridden
Definition: MooseMesh.h:1430
Restartable(const MooseObject *moose_object, const std::string &system_name)
Class constructor.
Definition: Restartable.C:18
Moose::PatchUpdateType _patch_update_strategy
The patch update strategy.
Definition: MooseMesh.h:1571
bool _partitioner_overridden
Definition: MooseMesh.h:1437
bool _is_displaced
Whether this mesh is displaced.
Definition: MooseMesh.h:1849
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1433
bool _skip_deletion_repartition_after_refine
Whether or not skip remote deletion and repartition after uniform refinements.
Definition: MooseMesh.h:1463
bool _need_delete
Whether we need to delete remote elements after init&#39;ing the EquationSystems.
Definition: MooseMesh.h:1825
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.
const InputParameters & parameters() const
Get the parameters of the object.
unsigned int _patch_size
The number of nodes to consider in the NearestNode neighborhood.
Definition: MooseMesh.h:1562
void paramWarning(const std::string &param, Args... args) const
Emits a warning prefixed with the file and line number of the given param (from the input file) along...
PerfGraphInterface(const MooseObject *moose_object)
For objects that are MooseObjects with a default prefix of type()
unsigned int _rz_coord_axis
Storage for RZ axis selection.
Definition: MooseMesh.h:1861
bool _distribution_overridden
Definition: MooseMesh.h:1429
unsigned int _ghosting_patch_size
The number of nearest neighbors to consider for ghosting purposes when iteration patch update strateg...
Definition: MooseMesh.h:1565
bool _regular_orthogonal_mesh
Boolean indicating whether this mesh was detected to be regular and orthogonal.
Definition: MooseMesh.h:1577

◆ MooseMesh() [2/3]

MooseMesh::MooseMesh ( const MooseMesh other_mesh)

Definition at line 289 of file MooseMesh.C.

290  : MooseObject(other_mesh._pars),
291  Restartable(this, "Mesh"),
292  PerfGraphInterface(this, "CopiedMesh"),
294  _parallel_type(other_mesh._parallel_type),
298  _mesh(other_mesh.getMesh().clone()),
305  _is_nemesis(false),
308  _patch_size(other_mesh._patch_size),
310  _max_leaf_size(other_mesh._max_leaf_size),
313  _is_split(other_mesh._is_split),
316  _has_lower_d(other_mesh._has_lower_d),
317  _allow_recovery(other_mesh._allow_recovery),
319  _need_delete(other_mesh._need_delete),
322  _coord_sys(other_mesh._coord_sys),
323  _rz_coord_axis(other_mesh._rz_coord_axis),
328 {
329  // Note: this calls BoundaryInfo::operator= without changing the
330  // ownership semantics of either Mesh's BoundaryInfo object.
331  getMesh().get_boundary_info() = other_mesh.getMesh().get_boundary_info();
332 
333  const std::set<SubdomainID> & subdomains = other_mesh.meshSubdomains();
334  for (const auto & sbd_id : subdomains)
335  setSubdomainName(sbd_id, other_mesh.getMesh().subdomain_name(sbd_id));
336 
337  // Get references to BoundaryInfo objects to make the code below cleaner...
338  const BoundaryInfo & other_boundary_info = other_mesh.getMesh().get_boundary_info();
339  BoundaryInfo & boundary_info = getMesh().get_boundary_info();
340 
341  // Use the other BoundaryInfo object to build the list of side boundary ids
342  std::vector<BoundaryID> side_boundaries;
343  other_boundary_info.build_side_boundary_ids(side_boundaries);
344 
345  // Assign those boundary ids in our BoundaryInfo object
346  for (const auto & side_bnd_id : side_boundaries)
347  boundary_info.sideset_name(side_bnd_id) = other_boundary_info.get_sideset_name(side_bnd_id);
348 
349  // Do the same thing for node boundary ids
350  std::vector<BoundaryID> node_boundaries;
351  other_boundary_info.build_node_boundary_ids(node_boundaries);
352 
353  for (const auto & node_bnd_id : node_boundaries)
354  boundary_info.nodeset_name(node_bnd_id) = other_boundary_info.get_nodeset_name(node_bnd_id);
355 
356  _bounds.resize(other_mesh._bounds.size());
357  for (std::size_t i = 0; i < _bounds.size(); ++i)
358  {
359  _bounds[i].resize(other_mesh._bounds[i].size());
360  for (std::size_t j = 0; j < _bounds[i].size(); ++j)
361  _bounds[i][j] = other_mesh._bounds[i][j];
362  }
363 
365 }
ParallelType _parallel_type
Can be set to DISTRIBUTED, REPLICATED, or DEFAULT.
Definition: MooseMesh.h:1423
std::vector< std::vector< Real > > _bounds
The bounds in each dimension of the mesh for regular orthogonal meshes.
Definition: MooseMesh.h:1580
bool _node_to_elem_map_built
Definition: MooseMesh.h:1506
bool _is_nemesis
True if a Nemesis Mesh was read in.
Definition: MooseMesh.h:1469
std::vector< SubdomainName > _provided_coord_blocks
Set for holding user-provided coordinate system type block names.
Definition: MooseMesh.h:1874
bool _need_ghost_ghosted_boundaries
A parallel mesh generator such as DistributedRectilinearMeshGenerator already make everything ready...
Definition: MooseMesh.h:1837
unsigned int _uniform_refine_level
The level of uniform refinement requested (set to zero if AMR is disabled)
Definition: MooseMesh.h:1457
std::string & nodeset_name(boundary_id_type id)
unsigned int _max_leaf_size
Definition: MooseMesh.h:1568
std::map< SubdomainID, Moose::CoordinateSystemType > & _coord_sys
Type of coordinate system per subdomain.
Definition: MooseMesh.h:1858
bool _custom_partitioner_requested
Definition: MooseMesh.h:1441
bool _doing_p_refinement
Whether we have p-refinement (as opposed to h-refinement)
Definition: MooseMesh.h:1877
MooseObject(const InputParameters &parameters)
Definition: MooseObject.C:48
bool _has_lower_d
Whether there are any lower-dimensional blocks that are manifolds of higher-dimensional block faces...
Definition: MooseMesh.h:1816
MooseEnum _partitioner_name
The partitioner used on this mesh.
Definition: MooseMesh.h:1436
bool _node_to_active_semilocal_elem_map_built
Definition: MooseMesh.h:1510
void build_side_boundary_ids(std::vector< boundary_id_type > &b_ids) const
bool _skip_refine_when_use_split
Whether or not to skip uniform refinements when using a pre-split mesh.
Definition: MooseMesh.h:1460
std::set< SubdomainID > _lower_d_boundary_blocks
Mesh blocks for boundary lower-d elements in different types.
Definition: MooseMesh.h:1808
const BoundaryInfo & get_boundary_info() const
virtual std::unique_ptr< MeshBase > clone() const=0
bool _allow_recovery
Whether or not this Mesh is allowed to read a recovery file.
Definition: MooseMesh.h:1819
std::set< SubdomainID > _lower_d_interior_blocks
Mesh blocks for interior lower-d elements in different types.
Definition: MooseMesh.h:1806
void updateCoordTransform()
Update the coordinate transformation object based on our coordinate system data.
Definition: MooseMesh.C:4254
bool _use_distributed_mesh
False by default.
Definition: MooseMesh.h:1428
bool _built_from_other_mesh
Whether or not this mesh was built from another mesh.
Definition: MooseMesh.h:1419
bool _allow_remote_element_removal
Whether to allow removal of remote elements.
Definition: MooseMesh.h:1828
void setSubdomainName(SubdomainID subdomain_id, const SubdomainName &name)
This method sets the name for subdomain_id to name.
Definition: MooseMesh.C:1746
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
bool _construct_node_list_from_side_list
Whether or not to allow generation of nodesets from sidesets.
Definition: MooseMesh.h:1822
std::string & subdomain_name(subdomain_id_type id)
const bool _is_split
Whether or not we are using a (pre-)split mesh (automatically DistributedMesh)
Definition: MooseMesh.h:1586
unsigned int uniformRefineLevel() const
Returns the level of uniform refinement requested (zero if AMR is disabled).
Definition: MooseMesh.C:3211
bool _coord_system_set
Whether the coordinate system has been set.
Definition: MooseMesh.h:1871
bool _parallel_type_overridden
Definition: MooseMesh.h:1430
Restartable(const MooseObject *moose_object, const std::string &system_name)
Class constructor.
Definition: Restartable.C:18
std::string & sideset_name(boundary_id_type id)
Moose::PatchUpdateType _patch_update_strategy
The patch update strategy.
Definition: MooseMesh.h:1571
bool _partitioner_overridden
Definition: MooseMesh.h:1437
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1433
bool _skip_deletion_repartition_after_refine
Whether or not skip remote deletion and repartition after uniform refinements.
Definition: MooseMesh.h:1463
bool _need_delete
Whether we need to delete remote elements after init&#39;ing the EquationSystems.
Definition: MooseMesh.h:1825
const InputParameters & _pars
Parameters of this object, references the InputParameters stored in the InputParametersWarehouse.
unsigned int _patch_size
The number of nodes to consider in the NearestNode neighborhood.
Definition: MooseMesh.h:1562
PerfGraphInterface(const MooseObject *moose_object)
For objects that are MooseObjects with a default prefix of type()
std::unordered_map< SubdomainID, std::pair< Point, RealVectorValue > > _subdomain_id_to_rz_coord_axis
Map of subdomain ID to general axisymmetric axis.
Definition: MooseMesh.h:1864
unsigned int _rz_coord_axis
Storage for RZ axis selection.
Definition: MooseMesh.h:1861
bool _distribution_overridden
Definition: MooseMesh.h:1429
unsigned int _ghosting_patch_size
The number of nearest neighbors to consider for ghosting purposes when iteration patch update strateg...
Definition: MooseMesh.h:1565
bool _regular_orthogonal_mesh
Boolean indicating whether this mesh was detected to be regular and orthogonal.
Definition: MooseMesh.h:1577
const std::set< SubdomainID > & meshSubdomains() const
Returns a read-only reference to the set of subdomains currently present in the Mesh.
Definition: MooseMesh.C:3166

◆ MooseMesh() [3/3]

MooseMesh::MooseMesh ( )
delete

◆ ~MooseMesh()

MooseMesh::~MooseMesh ( )
virtual

Definition at line 367 of file MooseMesh.C.

368 {
369  freeBndNodes();
370  freeBndElems();
372 }
void freeBndElems()
Definition: MooseMesh.C:393
void clearQuadratureNodes()
Clear out any existing quadrature nodes.
Definition: MooseMesh.C:1677
void freeBndNodes()
Definition: MooseMesh.C:375

Member Function Documentation

◆ activeLocalElementsBegin() [1/2]

MeshBase::element_iterator MooseMesh::activeLocalElementsBegin ( )

Calls active_local_nodes_begin/end() on the underlying libMesh mesh object.

Definition at line 3046 of file MooseMesh.C.

Referenced by FEProblemBase::checkDisplacementOrders(), and hasSecondOrderElements().

3047 {
3048  return getMesh().active_local_elements_begin();
3049 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443

◆ activeLocalElementsBegin() [2/2]

MeshBase::const_element_iterator MooseMesh::activeLocalElementsBegin ( ) const

Definition at line 3058 of file MooseMesh.C.

3059 {
3060  return getMesh().active_local_elements_begin();
3061 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443

◆ activeLocalElementsEnd() [1/2]

const MeshBase::element_iterator MooseMesh::activeLocalElementsEnd ( )

Definition at line 3052 of file MooseMesh.C.

Referenced by FEProblemBase::checkDisplacementOrders(), and hasSecondOrderElements().

3053 {
3054  return getMesh().active_local_elements_end();
3055 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443

◆ activeLocalElementsEnd() [2/2]

const MeshBase::const_element_iterator MooseMesh::activeLocalElementsEnd ( ) const

Definition at line 3064 of file MooseMesh.C.

3065 {
3066  return getMesh().active_local_elements_end();
3067 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443

◆ addGhostedBoundary()

void MooseMesh::addGhostedBoundary ( BoundaryID  boundary_id)

This will add the boundary ids to be ghosted to this processor.

Definition at line 3224 of file MooseMesh.C.

Referenced by FEProblemBase::addGhostedBoundary().

3225 {
3226  _ghosted_boundaries.insert(boundary_id);
3227 }
std::set< unsigned int > _ghosted_boundaries
Definition: MooseMesh.h:1558

◆ addPeriodicVariable()

void MooseMesh::addPeriodicVariable ( unsigned int  var_num,
BoundaryID  primary,
BoundaryID  secondary 
)

For "regular orthogonal" meshes, determine if variable var_num is periodic with respect to the primary and secondary BoundaryIDs, record this fact in the _periodic_dim data structure.

Definition at line 2212 of file MooseMesh.C.

Referenced by AddPeriodicBCAction::setPeriodicVars().

2213 {
2215  return;
2216 
2217  _periodic_dim[var_num].resize(dimension());
2218 
2219  _half_range = Point(dimensionWidth(0) / 2.0, dimensionWidth(1) / 2.0, dimensionWidth(2) / 2.0);
2220 
2221  bool component_found = false;
2222  for (unsigned int component = 0; component < dimension(); ++component)
2223  {
2224  const std::pair<BoundaryID, BoundaryID> * boundary_ids = getPairedBoundaryMapping(component);
2225 
2226  if (boundary_ids != nullptr &&
2227  ((boundary_ids->first == primary && boundary_ids->second == secondary) ||
2228  (boundary_ids->first == secondary && boundary_ids->second == primary)))
2229  {
2230  _periodic_dim[var_num][component] = true;
2231  component_found = true;
2232  }
2233  }
2234  if (!component_found)
2235  mooseWarning("Could not find a match between boundary '",
2236  getBoundaryName(primary),
2237  "' and '",
2238  getBoundaryName(secondary),
2239  "' to set periodic boundary conditions for variable (index:",
2240  var_num,
2241  ") in either the X, Y or Z direction. The periodic dimension of the mesh for this "
2242  "variable will not be stored.");
2243 }
RealVectorValue _half_range
A convenience vector used to hold values in each dimension representing half of the range...
Definition: MooseMesh.h:1631
const std::string & getBoundaryName(BoundaryID boundary_id)
Return the name of the boundary given the id.
Definition: MooseMesh.C:1787
void mooseWarning(Args &&... args) const
Emits a warning prefixed with object name and type.
virtual unsigned int dimension() const
Returns MeshBase::mesh_dimension(), (not MeshBase::spatial_dimension()!) of the underlying libMesh me...
Definition: MooseMesh.C:2923
const std::pair< BoundaryID, BoundaryID > * getPairedBoundaryMapping(unsigned int component)
This function attempts to return the paired boundary ids for the given component. ...
Definition: MooseMesh.C:2288
Real dimensionWidth(unsigned int component) const
Returns the width of the requested dimension.
Definition: MooseMesh.C:2188
std::map< unsigned int, std::vector< bool > > _periodic_dim
A map of vectors indicating which dimensions are periodic in a regular orthogonal mesh for the specif...
Definition: MooseMesh.h:1626
bool _regular_orthogonal_mesh
Boolean indicating whether this mesh was detected to be regular and orthogonal.
Definition: MooseMesh.h:1577

◆ addQuadratureNode()

Node * MooseMesh::addQuadratureNode ( const Elem elem,
const unsigned short int  side,
const unsigned int  qp,
BoundaryID  bid,
const Point point 
)

Adds a fictitious "QuadratureNode".

This doesn't actually add it to the libMesh mesh... we just keep track of these here in MooseMesh.

QuadratureNodes are fictitious "Nodes" that are located at quadrature points. This is useful for using the geometric search system to do searches based on quadrature point locations....

Parameters
elemThe element
sideThe side number on which we want to add a quadrature node
qpThe number of the quadrature point
bidThe boundary ID for the point to be added with
pointThe physical location of the point

Definition at line 1607 of file MooseMesh.C.

Referenced by GeometricSearchData::generateQuadratureNodes().

1612 {
1613  Node * qnode;
1614 
1615  if (_elem_to_side_to_qp_to_quadrature_nodes[elem->id()][side].find(qp) ==
1617  {
1618  // Create a new node id starting from the max node id and counting down. This will be the least
1619  // likely to collide with an existing node id.
1620  // Note that we are using numeric_limits<unsigned>::max even
1621  // though max_id is stored as a dof_id_type. I tried this with
1622  // numeric_limits<dof_id_type>::max and it broke several tests in
1623  // MOOSE. So, this is some kind of a magic number that we will
1624  // just continue to use...
1626  dof_id_type new_id = max_id - _quadrature_nodes.size();
1627 
1628  if (new_id <= getMesh().max_node_id())
1629  mooseError("Quadrature node id collides with existing node id!");
1630 
1631  qnode = new Node(point, new_id);
1632 
1633  // Keep track of this new node in two different ways for easy lookup
1634  _quadrature_nodes[new_id] = qnode;
1635  _elem_to_side_to_qp_to_quadrature_nodes[elem->id()][side][qp] = qnode;
1636 
1637  if (elem->active())
1638  {
1639  _node_to_elem_map[new_id].push_back(elem->id());
1640  _node_to_active_semilocal_elem_map[new_id].push_back(elem->id());
1641  }
1642  }
1643  else
1644  qnode = _elem_to_side_to_qp_to_quadrature_nodes[elem->id()][side][qp];
1645 
1646  BndNode * bnode = new BndNode(qnode, bid);
1647  _bnd_nodes.push_back(bnode);
1648  _bnd_node_ids[bid].insert(qnode->id());
1649 
1650  _extra_bnd_nodes.push_back(*bnode);
1651 
1652  // Do this so the range will be regenerated next time it is accessed
1653  _bnd_node_range.reset();
1654 
1655  return qnode;
1656 }
std::map< dof_id_type, Node * > _quadrature_nodes
Definition: MooseMesh.h:1547
std::map< dof_id_type, std::vector< dof_id_type > > _node_to_elem_map
A map of all of the current nodes to the elements that they are connected to.
Definition: MooseMesh.h:1505
std::map< boundary_id_type, std::set< dof_id_type > > _bnd_node_ids
Map of sets of node IDs in each boundary.
Definition: MooseMesh.h:1537
auto max(const L &left, const R &right)
dof_id_type id() const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
std::vector< BndNode * > _bnd_nodes
array of boundary nodes
Definition: MooseMesh.h:1533
std::vector< BndNode > _extra_bnd_nodes
Definition: MooseMesh.h:1550
std::map< dof_id_type, std::map< unsigned int, std::map< dof_id_type, Node * > > > _elem_to_side_to_qp_to_quadrature_nodes
Definition: MooseMesh.h:1549
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094
bool active() const
std::map< dof_id_type, std::vector< dof_id_type > > _node_to_active_semilocal_elem_map
A map of all of the current nodes to the active elements that they are connected to.
Definition: MooseMesh.h:1509
std::unique_ptr< libMesh::StoredRange< MooseMesh::const_bnd_node_iterator, const BndNode * > > _bnd_node_range
Definition: MooseMesh.h:1500
uint8_t dof_id_type

◆ addUniqueNode()

const Node * MooseMesh::addUniqueNode ( const Point p,
Real  tol = 1e-6 
)

Add a new node to the mesh.

If there is already a node located at the point passed then the node will not be added. In either case a reference to the node at that location will be returned

Looping through the mesh nodes each time we add a point is very slow. To speed things up we keep a local data structure

Definition at line 1573 of file MooseMesh.C.

1574 {
1579  if (getMesh().n_nodes() != _node_map.size())
1580  {
1581  _node_map.clear();
1582  _node_map.reserve(getMesh().n_nodes());
1583  for (const auto & node : getMesh().node_ptr_range())
1584  _node_map.push_back(node);
1585  }
1586 
1587  Node * node = nullptr;
1588  for (unsigned int i = 0; i < _node_map.size(); ++i)
1589  {
1590  if (p.relative_fuzzy_equals(*_node_map[i], tol))
1591  {
1592  node = _node_map[i];
1593  break;
1594  }
1595  }
1596  if (node == nullptr)
1597  {
1598  node = getMesh().add_node(new Node(p));
1599  _node_map.push_back(node);
1600  }
1601 
1602  mooseAssert(node != nullptr, "Node is NULL");
1603  return node;
1604 }
const dof_id_type n_nodes
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
std::vector< Node * > _node_map
Vector of all the Nodes in the mesh for determining when to add a new point.
Definition: MooseMesh.h:1574
virtual Node * add_node(Node *n)=0
virtual const Node & node(const dof_id_type i) const
Various accessors (pointers/references) for Node "i".
Definition: MooseMesh.C:817
bool relative_fuzzy_equals(const TypeVector< Real > &rhs, Real tol=TOLERANCE) const

◆ allFaceInfo()

const std::vector< FaceInfo > & MooseMesh::allFaceInfo ( ) const
inline

Accessor for all FaceInfo objects.

Definition at line 2179 of file MooseMesh.h.

2180 {
2181  return _all_face_info;
2182 }
std::vector< FaceInfo > _all_face_info
FaceInfo object storing information for face based loops.
Definition: MooseMesh.h:1604

◆ allowRecovery()

void MooseMesh::allowRecovery ( bool  allow)
inline

Set whether or not this mesh is allowed to read a recovery file.

Definition at line 1031 of file MooseMesh.h.

1031 { _allow_recovery = allow; }
bool _allow_recovery
Whether or not this Mesh is allowed to read a recovery file.
Definition: MooseMesh.h:1819

◆ allowRemoteElementRemoval() [1/2]

void MooseMesh::allowRemoteElementRemoval ( bool  allow_removal)

Set whether to allow remote element removal.

Definition at line 3910 of file MooseMesh.C.

3911 {
3912  _allow_remote_element_removal = allow_remote_element_removal;
3913  if (_mesh)
3914  _mesh->allow_remote_element_removal(allow_remote_element_removal);
3915 
3916  if (!allow_remote_element_removal)
3917  // If we're not allowing remote element removal now, then we will need deletion later after
3918  // late geoemetric ghosting functors have been added (late geometric ghosting functor addition
3919  // happens when algebraic ghosting functors are added)
3920  _need_delete = true;
3921 }
bool _allow_remote_element_removal
Whether to allow removal of remote elements.
Definition: MooseMesh.h:1828
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1433
bool _need_delete
Whether we need to delete remote elements after init&#39;ing the EquationSystems.
Definition: MooseMesh.h:1825

◆ allowRemoteElementRemoval() [2/2]

bool MooseMesh::allowRemoteElementRemoval ( ) const
inline

Whether we are allow remote element removal.

Definition at line 1094 of file MooseMesh.h.

Referenced by MooseMesh().

bool _allow_remote_element_removal
Whether to allow removal of remote elements.
Definition: MooseMesh.h:1828

◆ areElemIDsIdentical()

bool MooseMesh::areElemIDsIdentical ( const std::string &  id_name1,
const std::string &  id_name2 
) const
inline

Whether or not two extra element integers are identical.

Definition at line 2165 of file MooseMesh.h.

2166 {
2167  auto id1 = getElementIDIndex(id_name1);
2168  auto id2 = getElementIDIndex(id_name2);
2169  return _id_identical_flag[id1][id2];
2170 }
std::vector< std::vector< bool > > _id_identical_flag
Flags to indicate whether or not any two extra element integers are the same.
Definition: MooseMesh.h:1846
unsigned int getElementIDIndex(const std::string &id_name) const
Return the accessing integer for an extra element integer with its name.
Definition: MooseMesh.h:2157

◆ bndElemsBegin()

MooseMesh::bnd_elem_iterator MooseMesh::bndElemsBegin ( )
virtual

Return iterators to the beginning/end of the boundary elements list.

Definition at line 1558 of file MooseMesh.C.

Referenced by getBoundaryElementRange(), and MeshInfo::possiblyAddSidesetInfo().

1559 {
1561  return bnd_elem_iterator(_bnd_elems.begin(), _bnd_elems.end(), p);
1562 }
std::vector< BndElement * > _bnd_elems
array of boundary elems
Definition: MooseMesh.h:1540

◆ bndElemsEnd()

MooseMesh::bnd_elem_iterator MooseMesh::bndElemsEnd ( )
virtual

Definition at line 1566 of file MooseMesh.C.

Referenced by getBoundaryElementRange(), and MeshInfo::possiblyAddSidesetInfo().

1567 {
1569  return bnd_elem_iterator(_bnd_elems.end(), _bnd_elems.end(), p);
1570 }
std::vector< BndElement * > _bnd_elems
array of boundary elems
Definition: MooseMesh.h:1540

◆ bndNodesBegin()

MooseMesh::bnd_node_iterator MooseMesh::bndNodesBegin ( )
virtual

Return iterators to the beginning/end of the boundary nodes list.

Definition at line 1542 of file MooseMesh.C.

Referenced by getBoundaryNodeRange().

1543 {
1545  return bnd_node_iterator(_bnd_nodes.begin(), _bnd_nodes.end(), p);
1546 }
std::vector< BndNode * > _bnd_nodes
array of boundary nodes
Definition: MooseMesh.h:1533

◆ bndNodesEnd()

MooseMesh::bnd_node_iterator MooseMesh::bndNodesEnd ( )
virtual

Definition at line 1550 of file MooseMesh.C.

Referenced by getBoundaryNodeRange().

1551 {
1553  return bnd_node_iterator(_bnd_nodes.end(), _bnd_nodes.end(), p);
1554 }
std::vector< BndNode * > _bnd_nodes
array of boundary nodes
Definition: MooseMesh.h:1533

◆ boundaryLowerDBlocks()

const std::set<SubdomainID>& MooseMesh::boundaryLowerDBlocks ( ) const
inline
Returns
The set of lower-dimensional blocks for boundary sides

Definition at line 1407 of file MooseMesh.h.

Referenced by FEProblemBase::adaptMesh(), ArrayHFEMDirichletBC::ArrayHFEMDirichletBC(), ArrayLowerDIntegratedBC::ArrayLowerDIntegratedBC(), NonlinearSystemBase::checkKernelCoverage(), HFEMDirichletBC::HFEMDirichletBC(), FEProblemBase::initialAdaptMesh(), and LowerDIntegratedBC::LowerDIntegratedBC().

1407 { return _lower_d_boundary_blocks; }
std::set< SubdomainID > _lower_d_boundary_blocks
Mesh blocks for boundary lower-d elements in different types.
Definition: MooseMesh.h:1808

◆ buildActiveSideList()

std::vector< std::tuple< dof_id_type, unsigned short int, boundary_id_type > > MooseMesh::buildActiveSideList ( ) const

Calls BoundaryInfo::build_active_side_list.

Returns
A container of active (element, side, id) tuples.

Definition at line 3010 of file MooseMesh.C.

Referenced by buildFiniteVolumeInfo(), and PenetrationLocator::detectPenetration().

3011 {
3013 }
void build_active_side_list(std::vector< dof_id_type > &element_id_list, std::vector< unsigned short int > &side_list, std::vector< boundary_id_type > &bc_id_list) const
const BoundaryInfo & get_boundary_info() const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443

◆ buildBndElemList()

void MooseMesh::buildBndElemList ( )

Definition at line 1152 of file MooseMesh.C.

Referenced by update().

1153 {
1154  TIME_SECTION("buildBndElemList", 5, "Building Boundary Elements List");
1155 
1156  freeBndElems();
1157 
1158  auto bc_tuples = getMesh().get_boundary_info().build_active_side_list();
1159 
1160  int n = bc_tuples.size();
1161  _bnd_elems.clear();
1162  _bnd_elems.reserve(n);
1163  for (const auto & t : bc_tuples)
1164  {
1165  auto elem_id = std::get<0>(t);
1166  auto side_id = std::get<1>(t);
1167  auto bc_id = std::get<2>(t);
1168 
1169  _bnd_elems.push_back(new BndElement(getMesh().elem_ptr(elem_id), side_id, bc_id));
1170  _bnd_elem_ids[bc_id].insert(elem_id);
1171  }
1172 }
void freeBndElems()
Definition: MooseMesh.C:393
std::unordered_map< boundary_id_type, std::unordered_set< dof_id_type > > _bnd_elem_ids
Map of set of elem IDs connected to each boundary.
Definition: MooseMesh.h:1545
const boundary_id_type side_id
void build_active_side_list(std::vector< dof_id_type > &element_id_list, std::vector< unsigned short int > &side_list, std::vector< boundary_id_type > &bc_id_list) const
const BoundaryInfo & get_boundary_info() const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
std::vector< BndElement * > _bnd_elems
array of boundary elems
Definition: MooseMesh.h:1540

◆ buildCoarseningMap()

void MooseMesh::buildCoarseningMap ( const Elem elem,
libMesh::QBase qrule,
libMesh::QBase qrule_face,
int  input_side 
)
private

Build the coarsening map for a given element type.

This will tell you what quadrature points to copy from and to for stateful material properties on newly created elements from Adaptivity.

Parameters
elemThe element that represents the element type you need the coarsening map for.
qruleThe quadrature rule in use.
qrule_faceThe current face quadrature rule
input_sideThe side to map

TODO: When running with parallel mesh + stateful adaptivty we will need to make sure that each processor has a complete map. This may require parallel communication. This is likely to happen when running on a mixed element mesh.

Definition at line 2546 of file MooseMesh.C.

Referenced by buildHRefinementAndCoarseningMaps().

2547 {
2548  TIME_SECTION("buildCoarseningMap", 5, "Building Coarsening Map");
2549 
2550  std::pair<int, ElemType> the_pair(input_side, elem.type());
2551 
2552  if (_elem_type_to_coarsening_map.find(the_pair) != _elem_type_to_coarsening_map.end())
2553  mooseError("Already built a qp coarsening map!");
2554 
2555  std::vector<std::vector<QpMap>> refinement_map;
2556  std::vector<std::pair<unsigned int, QpMap>> & coarsen_map =
2557  _elem_type_to_coarsening_map[the_pair];
2558 
2559  // The -1 here is for a specific child. We don't do that for coarsening maps
2560  // Also note that we're always mapping the same side to the same side (which is guaranteed by
2561  // libMesh).
2563  &elem, qrule, qrule_face, refinement_map, coarsen_map, input_side, -1, input_side);
2564 
2571 }
std::map< std::pair< int, libMesh::ElemType >, std::vector< std::pair< unsigned int, QpMap > > > _elem_type_to_coarsening_map
Holds mappings for volume to volume and parent side to child side Map key:
Definition: MooseMesh.h:1779
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.
void findAdaptivityQpMaps(const Elem *template_elem, libMesh::QBase &qrule, libMesh::QBase &qrule_face, std::vector< std::vector< QpMap >> &refinement_map, std::vector< std::pair< unsigned int, QpMap >> &coarsen_map, int parent_side, int child, int child_side)
Given an elem type, get maps that tell us what qp&#39;s are closest to each other between a parent and it...
Definition: MooseMesh.C:2616
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094
virtual ElemType type() const=0

◆ buildElemIDInfo()

void MooseMesh::buildElemIDInfo ( )
private

Build extra data for faster access to the information of extra element integers.

Definition at line 1056 of file MooseMesh.C.

Referenced by update().

1057 {
1058  unsigned int n = getMesh().n_elem_integers() + 1;
1059 
1060  _block_id_mapping.clear();
1061  _max_ids.clear();
1062  _min_ids.clear();
1063  _id_identical_flag.clear();
1064 
1065  _block_id_mapping.resize(n);
1068  _id_identical_flag.resize(n, std::vector<bool>(n, true));
1069  for (const auto & elem : getMesh().active_local_element_ptr_range())
1070  for (unsigned int i = 0; i < n; ++i)
1071  {
1072  auto id = (i == n - 1 ? elem->subdomain_id() : elem->get_extra_integer(i));
1073  _block_id_mapping[i][elem->subdomain_id()].insert(id);
1074  if (id > _max_ids[i])
1075  _max_ids[i] = id;
1076  if (id < _min_ids[i])
1077  _min_ids[i] = id;
1078  for (unsigned int j = 0; j < n; ++j)
1079  {
1080  auto idj = (j == n - 1 ? elem->subdomain_id() : elem->get_extra_integer(j));
1081  if (i != j && _id_identical_flag[i][j] && id != idj)
1082  _id_identical_flag[i][j] = false;
1083  }
1084  }
1085 
1086  for (unsigned int i = 0; i < n; ++i)
1087  {
1088  for (auto & blk : meshSubdomains())
1089  comm().set_union(_block_id_mapping[i][blk]);
1090  comm().min(_id_identical_flag[i]);
1091  }
1092  comm().max(_max_ids);
1093  comm().min(_min_ids);
1094 }
std::vector< dof_id_type > _min_ids
Minimum integer ID for each extra element integer.
Definition: MooseMesh.h:1844
unsigned int n_elem_integers() const
std::vector< std::vector< bool > > _id_identical_flag
Flags to indicate whether or not any two extra element integers are the same.
Definition: MooseMesh.h:1846
const Parallel::Communicator & comm() const
auto max(const L &left, const R &right)
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
void min(const T &r, T &o, Request &req) const
std::vector< dof_id_type > _max_ids
Maximum integer ID for each extra element integer.
Definition: MooseMesh.h:1842
subdomain_id_type subdomain_id() const
void max(const T &r, T &o, Request &req) const
std::vector< std::unordered_map< SubdomainID, std::set< dof_id_type > > > _block_id_mapping
Unique element integer IDs for each subdomain and each extra element integers.
Definition: MooseMesh.h:1840
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094
auto min(const L &left, const R &right)
dof_id_type get_extra_integer(const unsigned int index) const
const std::set< SubdomainID > & meshSubdomains() const
Returns a read-only reference to the set of subdomains currently present in the Mesh.
Definition: MooseMesh.C:3166
void set_union(T &data, const unsigned int root_id) const

◆ buildFiniteVolumeInfo()

void MooseMesh::buildFiniteVolumeInfo ( ) const

Builds the face and elem info vectors that store meta-data needed for looping over and doing calculations based on mesh faces and elements in a finite volume setting.

This should only be called when finite volume variables are used in the problem or when the face and elem info objects are necessary for functor-based evaluations.

Definition at line 3734 of file MooseMesh.C.

Referenced by setupFiniteVolumeMeshData().

3735 {
3736  mooseAssert(!Threads::in_threads,
3737  "This routine has not been implemented for threads. Please query this routine before "
3738  "a threaded region or contact a MOOSE developer to discuss.");
3739  _finite_volume_info_dirty = false;
3740 
3741  using Keytype = std::pair<const Elem *, unsigned short int>;
3742 
3743  // create a map from elem/side --> boundary ids
3744  std::vector<std::tuple<dof_id_type, unsigned short int, boundary_id_type>> side_list =
3746  std::map<Keytype, std::set<boundary_id_type>> side_map;
3747  for (auto & [elem_id, side, bc_id] : side_list)
3748  {
3749  const Elem * elem = _mesh->elem_ptr(elem_id);
3750  Keytype key(elem, side);
3751  auto & bc_set = side_map[key];
3752  bc_set.insert(bc_id);
3753  }
3754 
3755  _face_info.clear();
3756  _all_face_info.clear();
3757  _elem_side_to_face_info.clear();
3758 
3759  _elem_to_elem_info.clear();
3760  _elem_info.clear();
3761 
3762  // by performing the element ID comparison check in the below loop, we are ensuring that we never
3763  // double count face contributions. If a face lies along a process boundary, the only process that
3764  // will contribute to both sides of the face residuals/Jacobians will be the process that owns the
3765  // element with the lower ID.
3766  auto begin = getMesh().active_elements_begin();
3767  auto end = getMesh().active_elements_end();
3768 
3769  // We prepare a map connecting the Elem* and the corresponding ElemInfo
3770  // for the active elements.
3771  for (const Elem * elem : as_range(begin, end))
3772  _elem_to_elem_info.emplace(elem->id(), elem);
3773 
3774  dof_id_type face_index = 0;
3775  for (const Elem * elem : as_range(begin, end))
3776  {
3777  for (unsigned int side = 0; side < elem->n_sides(); ++side)
3778  {
3779  // get the neighbor element
3780  const Elem * neighbor = elem->neighbor_ptr(side);
3781 
3782  // Check if the FaceInfo shall belong to the element. If yes,
3783  // create and initialize the FaceInfo. We need this to ensure that
3784  // we do not duplicate FaceInfo-s.
3785  if (Moose::FV::elemHasFaceInfo(*elem, neighbor))
3786  {
3787  mooseAssert(!neighbor || (neighbor->level() < elem->level() ? neighbor->active() : true),
3788  "If the neighbor is coarser than the element, we expect that the neighbor must "
3789  "be active.");
3790 
3791  // We construct the faceInfo using the elementinfo and side index
3792  _all_face_info.emplace_back(&_elem_to_elem_info[elem->id()], side, face_index++);
3793 
3794  auto & fi = _all_face_info.back();
3795 
3796  // get all the sidesets that this face is contained in and cache them
3797  // in the face info.
3798  std::set<boundary_id_type> & boundary_ids = fi.boundaryIDs();
3799  boundary_ids.clear();
3800 
3801  // We initialize the weights/other information in faceInfo. If the neighbor does not exist
3802  // or is remote (so when we are on some sort of mesh boundary), we initialize the ghost
3803  // cell and use it to compute the weights corresponding to the faceInfo.
3804  if (!neighbor || neighbor == libMesh::remote_elem)
3805  fi.computeBoundaryCoefficients();
3806  else
3807  fi.computeInternalCoefficients(&_elem_to_elem_info[neighbor->id()]);
3808 
3809  auto lit = side_map.find(Keytype(&fi.elem(), fi.elemSideID()));
3810  if (lit != side_map.end())
3811  boundary_ids.insert(lit->second.begin(), lit->second.end());
3812 
3813  if (fi.neighborPtr())
3814  {
3815  auto rit = side_map.find(Keytype(fi.neighborPtr(), fi.neighborSideID()));
3816  if (rit != side_map.end())
3817  boundary_ids.insert(rit->second.begin(), rit->second.end());
3818  }
3819  }
3820  }
3821  }
3822 
3823  // Build the local face info and elem_side to face info maps. We need to do this after
3824  // _all_face_info is finished being constructed because emplace_back invalidates all iterators and
3825  // references if ever the new size exceeds capacity
3826  for (auto & fi : _all_face_info)
3827  {
3828  const Elem * const elem = &fi.elem();
3829  const auto side = fi.elemSideID();
3830 
3831 #ifndef NDEBUG
3832  auto pair_it =
3833 #endif
3834  _elem_side_to_face_info.emplace(std::make_pair(elem, side), &fi);
3835  mooseAssert(pair_it.second, "We should be adding unique FaceInfo objects.");
3836 
3837  // We will add the faces on processor boundaries to the list of face infos on each
3838  // associated processor.
3839  if (fi.elem().processor_id() == this->processor_id() ||
3840  (fi.neighborPtr() && (fi.neighborPtr()->processor_id() == this->processor_id())))
3841  _face_info.push_back(&fi);
3842  }
3843 
3844  for (auto & ei : _elem_to_elem_info)
3845  if (ei.second.elem()->processor_id() == this->processor_id())
3846  _elem_info.push_back(&ei.second);
3847 }
std::vector< FaceInfo > _all_face_info
FaceInfo object storing information for face based loops.
Definition: MooseMesh.h:1604
std::vector< const FaceInfo * > _face_info
Holds only those FaceInfo objects that have processor_id equal to this process&#39;s id, e.g.
Definition: MooseMesh.h:1608
bool elemHasFaceInfo(const Elem &elem, const Elem *const neighbor)
This function infers based on elements if the faceinfo between them belongs to the element or not...
Definition: FVUtils.C:21
bool _finite_volume_info_dirty
Definition: MooseMesh.h:1615
std::vector< std::tuple< dof_id_type, unsigned short int, boundary_id_type > > buildActiveSideList() const
Calls BoundaryInfo::build_active_side_list.
Definition: MooseMesh.C:3010
std::vector< const ElemInfo * > _elem_info
Holds only those ElemInfo objects that have processor_id equal to this process&#39;s id, e.g.
Definition: MooseMesh.h:1600
std::unordered_map< std::pair< const Elem *, unsigned int >, FaceInfo * > _elem_side_to_face_info
Map from elem-side pair to FaceInfo.
Definition: MooseMesh.h:1612
dof_id_type id() const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
SimpleRange< IndexType > as_range(const std::pair< IndexType, IndexType > &p)
std::unordered_map< dof_id_type, ElemInfo > _elem_to_elem_info
Map connecting elems with their corresponding ElemInfo, we use the element ID as the key...
Definition: MooseMesh.h:1596
virtual unsigned int n_sides() const=0
const Elem * neighbor_ptr(unsigned int i) const
unsigned int level() const
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1433
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094
processor_id_type processor_id() const
bool active() const
uint8_t dof_id_type
const RemoteElem * remote_elem

◆ buildHRefinementAndCoarseningMaps()

void MooseMesh::buildHRefinementAndCoarseningMaps ( Assembly assembly)
private

Definition at line 2306 of file MooseMesh.C.

Referenced by buildRefinementAndCoarseningMaps().

2307 {
2308  std::map<ElemType, Elem *> canonical_elems;
2309 
2310  // First, loop over all elements and find a canonical element for each type
2311  // Doing it this way guarantees that this is going to work in parallel
2312  for (const auto & elem : getMesh().element_ptr_range()) // TODO: Thread this
2313  {
2314  ElemType type = elem->type();
2315 
2316  if (canonical_elems.find(type) ==
2317  canonical_elems.end()) // If we haven't seen this type of elem before save it
2318  canonical_elems[type] = elem;
2319  else
2320  {
2321  Elem * stored = canonical_elems[type];
2322  if (elem->id() < stored->id()) // Arbitrarily keep the one with a lower id
2323  canonical_elems[type] = elem;
2324  }
2325  }
2326  // Now build the maps using these templates
2327  // Note: This MUST be done NOT threaded!
2328  for (const auto & can_it : canonical_elems)
2329  {
2330  Elem * elem = can_it.second;
2331 
2332  // Need to do this just once to get the right qrules put in place
2333  assembly->setCurrentSubdomainID(elem->subdomain_id());
2334  assembly->reinit(elem);
2335  assembly->reinit(elem, 0);
2336  auto && qrule = assembly->writeableQRule();
2337  auto && qrule_face = assembly->writeableQRuleFace();
2338 
2339  // Volume to volume projection for refinement
2340  buildRefinementMap(*elem, *qrule, *qrule_face, -1, -1, -1);
2341 
2342  // Volume to volume projection for coarsening
2343  buildCoarseningMap(*elem, *qrule, *qrule_face, -1);
2344 
2345  // Map the sides of children
2346  for (unsigned int side = 0; side < elem->n_sides(); side++)
2347  {
2348  // Side to side for sides that match parent's sides
2349  buildRefinementMap(*elem, *qrule, *qrule_face, side, -1, side);
2350  buildCoarseningMap(*elem, *qrule, *qrule_face, side);
2351  }
2352 
2353  // Child side to parent volume mapping for "internal" child sides
2354  for (unsigned int child = 0; child < elem->n_children(); ++child)
2355  for (unsigned int side = 0; side < elem->n_sides();
2356  ++side) // Assume children have the same number of sides!
2357  if (!elem->is_child_on_side(child, side)) // Otherwise we already computed that map
2358  buildRefinementMap(*elem, *qrule, *qrule_face, -1, child, side);
2359  }
2360 }
ElemType
libMesh::QBase *const & writeableQRule()
Returns the reference to the current quadrature being used.
Definition: Assembly.h:224
virtual bool is_child_on_side(const unsigned int c, const unsigned int s) const=0
virtual unsigned int n_children() const=0
void reinit(const Elem *elem)
Reinitialize objects (JxW, q_points, ...) for an elements.
dof_id_type id() const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
const std::string & type() const
Get the type of this class.
Definition: MooseBase.h:51
void buildRefinementMap(const Elem &elem, libMesh::QBase &qrule, libMesh::QBase &qrule_face, int parent_side, int child, int child_side)
Build the refinement map for a given element type.
Definition: MooseMesh.C:2467
void buildCoarseningMap(const Elem &elem, libMesh::QBase &qrule, libMesh::QBase &qrule_face, int input_side)
Build the coarsening map for a given element type.
Definition: MooseMesh.C:2546
virtual unsigned int n_sides() const=0
void setCurrentSubdomainID(SubdomainID i)
set the current subdomain ID
Definition: Assembly.h:385
subdomain_id_type subdomain_id() const
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094
virtual ElemType type() const=0
libMesh::QBase *const & writeableQRuleFace()
Returns the reference to the current quadrature being used on a current face.
Definition: Assembly.h:300

◆ buildLowerDMesh()

void MooseMesh::buildLowerDMesh ( )
private

Build lower-d mesh for all sides.

Definition at line 655 of file MooseMesh.C.

Referenced by init().

656 {
657  auto & mesh = getMesh();
658 
659  if (!mesh.is_serial())
660  mooseError(
661  "Hybrid finite element method must use replicated mesh.\nCurrently lower-dimensional mesh "
662  "does not support mesh re-partitioning and a debug assertion being hit related with "
663  "neighbors of lower-dimensional element, with distributed mesh.");
664 
665  // Lower-D element build requires neighboring element information
666  if (!mesh.is_prepared())
668 
669  // maximum number of sides of all elements
670  unsigned int max_n_sides = 0;
671 
672  // remove existing lower-d element first
673  std::set<Elem *> deleteable_elems;
674  for (auto & elem : mesh.element_ptr_range())
677  deleteable_elems.insert(elem);
678  else if (elem->n_sides() > max_n_sides)
679  max_n_sides = elem->n_sides();
680 
681  for (auto & elem : deleteable_elems)
683  for (const auto & id : _lower_d_interior_blocks)
684  _mesh_subdomains.erase(id);
685  for (const auto & id : _lower_d_boundary_blocks)
686  _mesh_subdomains.erase(id);
687  _lower_d_interior_blocks.clear();
688  _lower_d_boundary_blocks.clear();
689 
690  mesh.comm().max(max_n_sides);
691 
692  deleteable_elems.clear();
693 
694  // get all side types
695  std::set<int> interior_side_types;
696  std::set<int> boundary_side_types;
697  for (const auto & elem : mesh.active_element_ptr_range())
698  for (const auto side : elem->side_index_range())
699  {
700  Elem * neig = elem->neighbor_ptr(side);
701  std::unique_ptr<Elem> side_elem(elem->build_side_ptr(side));
702  if (neig)
703  interior_side_types.insert(side_elem->type());
704  else
705  boundary_side_types.insert(side_elem->type());
706  }
707  mesh.comm().set_union(interior_side_types);
708  mesh.comm().set_union(boundary_side_types);
709 
710  // assign block ids for different side types
711  std::map<ElemType, SubdomainID> interior_block_ids;
712  std::map<ElemType, SubdomainID> boundary_block_ids;
713  // we assume this id is not used by the mesh
715  for (const auto & tpid : interior_side_types)
716  {
717  const auto type = ElemType(tpid);
718  mesh.subdomain_name(id) = "INTERNAL_SIDE_LOWERD_SUBDOMAIN_" + Utility::enum_to_string(type);
719  interior_block_ids[type] = id;
720  _lower_d_interior_blocks.insert(id);
721  if (_mesh_subdomains.count(id) > 0)
722  mooseError("Trying to add a mesh block with id ", id, " that has existed in the mesh");
723  _mesh_subdomains.insert(id);
724  --id;
725  }
726  for (const auto & tpid : boundary_side_types)
727  {
728  const auto type = ElemType(tpid);
729  mesh.subdomain_name(id) = "BOUNDARY_SIDE_LOWERD_SUBDOMAIN_" + Utility::enum_to_string(type);
730  boundary_block_ids[type] = id;
731  _lower_d_boundary_blocks.insert(id);
732  if (_mesh_subdomains.count(id) > 0)
733  mooseError("Trying to add a mesh block with id ", id, " that has existed in the mesh");
734  _mesh_subdomains.insert(id);
735  --id;
736  }
737 
738  dof_id_type max_elem_id = mesh.max_elem_id();
739  unique_id_type max_unique_id = mesh.parallel_max_unique_id();
740 
741  std::vector<Elem *> side_elems;
743  for (const auto & elem : mesh.active_element_ptr_range())
744  {
745  // skip existing lower-d elements
746  if (elem->interior_parent())
747  continue;
748 
749  for (const auto side : elem->side_index_range())
750  {
751  Elem * neig = elem->neighbor_ptr(side);
752 
753  bool build_side = false;
754  if (!neig)
755  build_side = true;
756  else
757  {
758  mooseAssert(!neig->is_remote(), "We error if the mesh is not serial");
759  if (!neig->active())
760  build_side = true;
761  else if (neig->level() == elem->level() && elem->id() < neig->id())
762  build_side = true;
763  }
764 
765  if (build_side)
766  {
767  std::unique_ptr<Elem> side_elem(elem->build_side_ptr(side));
768 
769  // The side will be added with the same processor id as the parent.
770  side_elem->processor_id() = elem->processor_id();
771 
772  // Add subdomain ID
773  if (neig)
774  side_elem->subdomain_id() = interior_block_ids.at(side_elem->type());
775  else
776  side_elem->subdomain_id() = boundary_block_ids.at(side_elem->type());
777 
778  // set ids consistently across processors (these ids will be temporary)
779  side_elem->set_id(max_elem_id + elem->id() * max_n_sides + side);
780  side_elem->set_unique_id(max_unique_id + elem->id() * max_n_sides + side);
781 
782  // Also assign the side's interior parent, so it is always
783  // easy to figure out the Elem we came from.
784  // Note: the interior parent could be a ghost element.
785  side_elem->set_interior_parent(elem);
786 
787  side_elems.push_back(side_elem.release());
788 
789  // add link between higher d element to lower d element
790  auto pair = std::make_pair(elem, side);
791  auto link = std::make_pair(pair, side_elems.back());
792  auto ilink = std::make_pair(side_elems.back(), side);
795  }
796  }
797  }
798 
799  // finally, add the lower-dimensional element to the mesh
800  // Note: lower-d interior element will exist on a processor if its associated interior
801  // parent exists on a processor whether or not being a ghost. Lower-d elements will
802  // get its interior parent's processor id.
803  for (auto & elem : side_elems)
804  mesh.add_elem(elem);
805 
806  // we do all the stuff in prepare_for_use such as renumber_nodes_and_elements(),
807  // update_parallel_id_counts(), cache_elem_dims(), etc. except partitioning here.
808  const bool skip_partitioning_old = mesh.skip_partitioning();
809  mesh.skip_partitioning(true);
810  // Finding neighbors is ambiguous for lower-dimensional elements on interior faces
811  mesh.allow_find_neighbors(false);
813  mesh.skip_partitioning(skip_partitioning_old);
814 }
ElemType
bool is_prepared() const
virtual unique_id_type parallel_max_unique_id() const=0
const Elem * interior_parent() const
IntRange< unsigned short > side_index_range() const
void skip_partitioning(bool skip)
virtual std::unique_ptr< Elem > build_side_ptr(const unsigned int i)=0
std::unordered_map< const Elem *, unsigned short int > _lower_d_elem_to_higher_d_elem_side
Definition: MooseMesh.h:1812
void prepare_for_use(const bool skip_renumber_nodes_and_elements, const bool skip_find_neighbors)
MeshBase & mesh
std::unordered_map< std::pair< const Elem *, unsigned short int >, const Elem * > _higher_d_elem_side_to_lower_d_elem
Holds a map from a high-order element side to its corresponding lower-d element.
Definition: MooseMesh.h:1811
const Parallel::Communicator & comm() const
std::set< SubdomainID > _lower_d_boundary_blocks
Mesh blocks for boundary lower-d elements in different types.
Definition: MooseMesh.h:1808
std::set< SubdomainID > _lower_d_interior_blocks
Mesh blocks for interior lower-d elements in different types.
Definition: MooseMesh.h:1806
virtual bool is_serial() const
static const subdomain_id_type invalid_subdomain_id
virtual void find_neighbors(const bool reset_remote_elements=false, const bool reset_current_list=true)=0
virtual void delete_elem(Elem *e)=0
dof_id_type id() const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
virtual Elem * add_elem(Elem *e)=0
virtual dof_id_type max_elem_id() const=0
const std::string & type() const
Get the type of this class.
Definition: MooseBase.h:51
virtual bool is_remote() const
std::string & subdomain_name(subdomain_id_type id)
void allow_find_neighbors(bool allow)
std::string enum_to_string(const T e)
virtual unsigned int n_sides() const=0
const Elem * neighbor_ptr(unsigned int i) const
unsigned int level() const
subdomain_id_type subdomain_id() const
void max(const T &r, T &o, Request &req) const
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094
std::set< SubdomainID > _mesh_subdomains
A set of subdomain IDs currently present in the mesh.
Definition: MooseMesh.h:1516
bool active() const
processor_id_type processor_id() const
uint8_t unique_id_type
uint8_t dof_id_type
void set_union(T &data, const unsigned int root_id) const

◆ buildMesh()

virtual void MooseMesh::buildMesh ( )
pure virtual

Must be overridden by child classes.

This is where the Mesh object is actually created and filled in.

Implemented in MFEMMesh, PatternedMesh, StitchedMesh, MeshGeneratorMesh, AnnularMesh, ConcentricCircleMesh, GeneratedMesh, RinglebMesh, SpiralAnnularMesh, ImageMesh, FileMesh, and TiledMesh.

Referenced by init().

◆ buildMeshBaseObject()

std::unique_ptr< MeshBase > MooseMesh::buildMeshBaseObject ( unsigned int  dim = libMesh::invalid_uint)

Method to construct a libMesh::MeshBase object that is normally set and used by the MooseMesh object during the "init()" phase.

If the parameter dim is not provided, then its value will be taken from the input file mesh block.

Definition at line 2851 of file MooseMesh.C.

Referenced by MeshGenerator::buildMeshBaseObject(), and init().

2852 {
2853  std::unique_ptr<MeshBase> mesh;
2855  mesh = buildTypedMesh<DistributedMesh>(dim);
2856  else
2857  mesh = buildTypedMesh<ReplicatedMesh>(dim);
2858 
2859  return mesh;
2860 }
MeshBase & mesh
static constexpr std::size_t dim
This is the dimension of all vector and tensor datastructures used in MOOSE.
Definition: Moose.h:152
bool _use_distributed_mesh
False by default.
Definition: MooseMesh.h:1428

◆ buildNodeList()

void MooseMesh::buildNodeList ( )

Calls BoundaryInfo::build_node_list()/build_side_list() and makes separate copies of Nodes/Elems in those lists.

Allocates memory which is cleaned up in the freeBndNodes()/freeBndElems() functions.

Definition at line 1022 of file MooseMesh.C.

Referenced by update().

1023 {
1024  TIME_SECTION("buildNodeList", 5, "Building Node List");
1025 
1026  freeBndNodes();
1027 
1028  auto bc_tuples = getMesh().get_boundary_info().build_node_list();
1029 
1030  int n = bc_tuples.size();
1031  _bnd_nodes.clear();
1032  _bnd_nodes.reserve(n);
1033  for (const auto & t : bc_tuples)
1034  {
1035  auto node_id = std::get<0>(t);
1036  auto bc_id = std::get<1>(t);
1037 
1038  _bnd_nodes.push_back(new BndNode(getMesh().node_ptr(node_id), bc_id));
1039  _node_set_nodes[bc_id].push_back(node_id);
1040  _bnd_node_ids[bc_id].insert(node_id);
1041  }
1042 
1043  _bnd_nodes.reserve(_bnd_nodes.size() + _extra_bnd_nodes.size());
1044  for (unsigned int i = 0; i < _extra_bnd_nodes.size(); i++)
1045  {
1046  BndNode * bnode = new BndNode(_extra_bnd_nodes[i]._node, _extra_bnd_nodes[i]._bnd_id);
1047  _bnd_nodes.push_back(bnode);
1048  _bnd_node_ids[std::get<1>(bc_tuples[i])].insert(_extra_bnd_nodes[i]._node->id());
1049  }
1050 
1051  // This sort is here so that boundary conditions are always applied in the same order
1052  std::sort(_bnd_nodes.begin(), _bnd_nodes.end(), BndNodeCompare());
1053 }
Helper class for sorting Boundary Nodes so that we always get the same order of application for bound...
Definition: MooseMesh.C:998
std::map< boundary_id_type, std::set< dof_id_type > > _bnd_node_ids
Map of sets of node IDs in each boundary.
Definition: MooseMesh.h:1537
std::map< boundary_id_type, std::vector< dof_id_type > > _node_set_nodes
list of nodes that belongs to a specified nodeset: indexing [nodeset_id] -> [array of node ids] ...
Definition: MooseMesh.h:1556
const BoundaryInfo & get_boundary_info() const
void build_node_list(std::vector< dof_id_type > &node_id_list, std::vector< boundary_id_type > &bc_id_list) const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
std::vector< BndNode * > _bnd_nodes
array of boundary nodes
Definition: MooseMesh.h:1533
std::vector< BndNode > _extra_bnd_nodes
Definition: MooseMesh.h:1550
void freeBndNodes()
Definition: MooseMesh.C:375

◆ buildNodeListFromSideList()

void MooseMesh::buildNodeListFromSideList ( )

Calls BoundaryInfo::build_node_list_from_side_list().

Definition at line 2978 of file MooseMesh.C.

Referenced by prepare(), and update().

2979 {
2982 }
void build_node_list_from_side_list()
const BoundaryInfo & get_boundary_info() const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
bool _construct_node_list_from_side_list
Whether or not to allow generation of nodesets from sidesets.
Definition: MooseMesh.h:1822

◆ buildPeriodicNodeMap()

void MooseMesh::buildPeriodicNodeMap ( std::multimap< dof_id_type, dof_id_type > &  periodic_node_map,
unsigned int  var_number,
libMesh::PeriodicBoundaries pbs 
) const

This routine builds a multimap of boundary ids to matching boundary ids across all periodic boundaries in the system.

Definition at line 1808 of file MooseMesh.C.

1811 {
1812  TIME_SECTION("buildPeriodicNodeMap", 5);
1813 
1814  // clear existing map
1815  periodic_node_map.clear();
1816 
1817  // get periodic nodes
1818  std::vector<PeriodicNodeInfo> periodic_nodes;
1819  for (const auto & t : getMesh().get_boundary_info().build_node_list())
1820  {
1821  // unfortunately libMesh does not give us a pointer, so we have to look it up ourselves
1822  auto node = _mesh->node_ptr(std::get<0>(t));
1823  mooseAssert(node != nullptr,
1824  "libMesh::BoundaryInfo::build_node_list() returned an ID for a non-existing node");
1825  auto bc_id = std::get<1>(t);
1826  periodic_nodes.emplace_back(node, bc_id);
1827  }
1828 
1829  // sort by boundary id
1830  std::sort(periodic_nodes.begin(),
1831  periodic_nodes.end(),
1832  [](const PeriodicNodeInfo & a, const PeriodicNodeInfo & b) -> bool
1833  { return a.second > b.second; });
1834 
1835  // build kd-tree
1836  using KDTreeType = nanoflann::KDTreeSingleIndexAdaptor<
1837  nanoflann::L2_Simple_Adaptor<Real, PointListAdaptor<PeriodicNodeInfo>, Real, std::size_t>,
1839  LIBMESH_DIM,
1840  std::size_t>;
1841  const unsigned int max_leaf_size = 20; // slightly affects runtime
1842  auto point_list =
1843  PointListAdaptor<PeriodicNodeInfo>(periodic_nodes.begin(), periodic_nodes.end());
1844  auto kd_tree = std::make_unique<KDTreeType>(
1845  LIBMESH_DIM, point_list, nanoflann::KDTreeSingleIndexAdaptorParams(max_leaf_size));
1846  mooseAssert(kd_tree != nullptr, "KDTree was not properly initialized.");
1847  kd_tree->buildIndex();
1848 
1849  // data structures for kd-tree search
1850  nanoflann::SearchParameters search_params;
1851  std::vector<nanoflann::ResultItem<std::size_t, Real>> ret_matches;
1852 
1853  // iterate over periodic nodes (boundary ids are in contiguous blocks)
1854  libMesh::PeriodicBoundaryBase * periodic = nullptr;
1855  BoundaryID current_bc_id = BoundaryInfo::invalid_id;
1856  for (auto & pair : periodic_nodes)
1857  {
1858  // entering a new block of boundary IDs
1859  if (pair.second != current_bc_id)
1860  {
1861  current_bc_id = pair.second;
1862  periodic = pbs->boundary(current_bc_id);
1863  if (periodic && !periodic->is_my_variable(var_number))
1864  periodic = nullptr;
1865  }
1866 
1867  // variable is not periodic at this node, skip
1868  if (!periodic)
1869  continue;
1870 
1871  // clear result buffer
1872  ret_matches.clear();
1873 
1874  // id of the current node
1875  const auto id = pair.first->id();
1876 
1877  // position where we expect a periodic partner for the current node and boundary
1878  Point search_point = periodic->get_corresponding_pos(*pair.first);
1879 
1880  // search at the expected point
1881  kd_tree->radiusSearch(&(search_point)(0), libMesh::TOLERANCE, ret_matches, search_params);
1882  for (auto & match_pair : ret_matches)
1883  {
1884  const auto & match = periodic_nodes[match_pair.first];
1885  // add matched node if the boundary id is the corresponding id in the periodic pair
1886  if (match.second == periodic->pairedboundary)
1887  periodic_node_map.emplace(id, match.first->id());
1888  }
1889  }
1890 }
static constexpr Real TOLERANCE
boundary_id_type pairedboundary
PeriodicBoundaryBase * boundary(boundary_id_type id)
virtual Point get_corresponding_pos(const Point &pt) const=0
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
std::pair< const Node *, BoundaryID > PeriodicNodeInfo
Helper type for building periodic node maps.
Definition: MooseMesh.h:1074
boundary_id_type BoundaryID
DIE A HORRIBLE DEATH HERE typedef LIBMESH_DEFAULT_SCALAR_TYPE Real
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1433
bool is_my_variable(unsigned int var_num) const
virtual const Node & node(const dof_id_type i) const
Various accessors (pointers/references) for Node "i".
Definition: MooseMesh.C:817
SearchParams SearchParameters

◆ buildPeriodicNodeSets()

void MooseMesh::buildPeriodicNodeSets ( std::map< BoundaryID, std::set< dof_id_type >> &  periodic_node_sets,
unsigned int  var_number,
libMesh::PeriodicBoundaries pbs 
) const

This routine builds a datastructure of node ids organized by periodic boundary ids.

Definition at line 1893 of file MooseMesh.C.

1896 {
1897  TIME_SECTION("buildPeriodicNodeSets", 5);
1898 
1899  periodic_node_sets.clear();
1900 
1901  // Loop over all the boundary nodes adding the periodic nodes to the appropriate set
1902  for (const auto & t : getMesh().get_boundary_info().build_node_list())
1903  {
1904  auto node_id = std::get<0>(t);
1905  auto bc_id = std::get<1>(t);
1906 
1907  // Is this current node on a known periodic boundary?
1908  if (periodic_node_sets.find(bc_id) != periodic_node_sets.end())
1909  periodic_node_sets[bc_id].insert(node_id);
1910  else // This still might be a periodic node but we just haven't seen this boundary_id yet
1911  {
1912  const libMesh::PeriodicBoundaryBase * periodic = pbs->boundary(bc_id);
1913  if (periodic && periodic->is_my_variable(var_number))
1914  periodic_node_sets[bc_id].insert(node_id);
1915  }
1916  }
1917 }
PeriodicBoundaryBase * boundary(boundary_id_type id)
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
bool is_my_variable(unsigned int var_num) const

◆ buildPRefinementAndCoarseningMaps()

void MooseMesh::buildPRefinementAndCoarseningMaps ( Assembly assembly)

Definition at line 2363 of file MooseMesh.C.

Referenced by buildRefinementAndCoarseningMaps(), and FEProblemBase::meshChanged().

2364 {
2369 
2370  std::map<ElemType, std::pair<Elem *, unsigned int>> elems_and_max_p_level;
2371 
2372  for (const auto & elem : getMesh().active_element_ptr_range())
2373  {
2374  const auto type = elem->type();
2375  auto & [picked_elem, max_p_level] = elems_and_max_p_level[type];
2376  if (!picked_elem)
2377  picked_elem = elem;
2378  max_p_level = std::max(max_p_level, elem->p_level());
2379  }
2380 
2381  // The only requirement on the FEType is that it can be arbitrarily p-refined
2382  const FEType p_refinable_fe_type(CONSTANT, libMesh::MONOMIAL);
2383  std::vector<Point> volume_ref_points_coarse, volume_ref_points_fine, face_ref_points_coarse,
2384  face_ref_points_fine;
2385  std::vector<unsigned int> p_levels;
2386 
2387  for (auto & [elem_type, elem_p_level_pair] : elems_and_max_p_level)
2388  {
2389  auto & [moose_elem, max_p_level] = elem_p_level_pair;
2390  const auto dim = moose_elem->dim();
2391  // Need to do this just once to get the right qrules put in place
2392  assembly->setCurrentSubdomainID(moose_elem->subdomain_id());
2393  assembly->reinit(moose_elem);
2394  assembly->reinit(moose_elem, 0);
2395  auto & qrule = assembly->writeableQRule();
2396  auto & qrule_face = assembly->writeableQRuleFace();
2397 
2398  libMesh::Parallel::Communicator self_comm{};
2399  ReplicatedMesh mesh(self_comm);
2401  for (const auto & nd : moose_elem->node_ref_range())
2402  mesh.add_point(nd);
2403 
2404  Elem * const elem = mesh.add_elem(Elem::build(elem_type).release());
2405  for (const auto i : elem->node_index_range())
2406  elem->set_node(i, mesh.node_ptr(i));
2407 
2408  std::unique_ptr<FEBase> fe_face(FEBase::build(dim, p_refinable_fe_type));
2409  fe_face->get_phi();
2410  const auto & face_phys_points = fe_face->get_xyz();
2411  fe_face->attach_quadrature_rule(qrule_face);
2412 
2413  qrule->init(*elem);
2414  volume_ref_points_coarse = qrule->get_points();
2415  fe_face->reinit(elem, (unsigned int)0);
2416  libMesh::FEMap::inverse_map(dim, elem, face_phys_points, face_ref_points_coarse);
2417 
2418  p_levels.resize(max_p_level + 1);
2419  std::iota(p_levels.begin(), p_levels.end(), 0);
2420  libMesh::MeshRefinement mesh_refinement(mesh);
2421 
2422  for (const auto p_level : p_levels)
2423  {
2424  mesh_refinement.uniformly_p_refine(1);
2425  qrule->init(*elem);
2426  volume_ref_points_fine = qrule->get_points();
2427  fe_face->reinit(elem, (unsigned int)0);
2428  libMesh::FEMap::inverse_map(dim, elem, face_phys_points, face_ref_points_fine);
2429 
2430  const auto map_key = std::make_pair(elem_type, p_level);
2431  auto & volume_refine_map = _elem_type_to_p_refinement_map[map_key];
2432  auto & face_refine_map = _elem_type_to_p_refinement_side_map[map_key];
2433  auto & volume_coarsen_map = _elem_type_to_p_coarsening_map[map_key];
2434  auto & face_coarsen_map = _elem_type_to_p_coarsening_side_map[map_key];
2435 
2436  auto fill_maps = [this](const auto & coarse_ref_points,
2437  const auto & fine_ref_points,
2438  auto & coarsen_map,
2439  auto & refine_map)
2440  {
2441  mapPoints(fine_ref_points, coarse_ref_points, refine_map);
2442  mapPoints(coarse_ref_points, fine_ref_points, coarsen_map);
2443  };
2444 
2445  fill_maps(
2446  volume_ref_points_coarse, volume_ref_points_fine, volume_coarsen_map, volume_refine_map);
2447  fill_maps(face_ref_points_coarse, face_ref_points_fine, face_coarsen_map, face_refine_map);
2448 
2449  // With this level's maps filled our fine points now become our coarse points
2450  volume_ref_points_fine.swap(volume_ref_points_coarse);
2451  face_ref_points_fine.swap(face_ref_points_coarse);
2452  }
2453  }
2454 }
std::unique_ptr< FEGenericBase< Real > > build(const unsigned int dim, const FEType &fet)
virtual Node *& set_node(const unsigned int i)
libMesh::QBase *const & writeableQRule()
Returns the reference to the current quadrature being used.
Definition: Assembly.h:224
static Point inverse_map(const unsigned int dim, const Elem *elem, const Point &p, const Real tolerance=TOLERANCE, const bool secure=true, const bool extra_checks=true)
MeshBase & mesh
static constexpr std::size_t dim
This is the dimension of all vector and tensor datastructures used in MOOSE.
Definition: Moose.h:152
unsigned int p_level() const
std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap > > _elem_type_to_p_coarsening_side_map
Definition: MooseMesh.h:1784
virtual Node * add_point(const Point &p, const dof_id_type id=DofObject::invalid_id, const processor_id_type proc_id=DofObject::invalid_processor_id)=0
void reinit(const Elem *elem)
Reinitialize objects (JxW, q_points, ...) for an elements.
auto max(const L &left, const R &right)
void mapPoints(const std::vector< Point > &from, const std::vector< Point > &to, std::vector< QpMap > &qp_map)
Find the closest points that map "from" to "to" and fill up "qp_map".
Definition: MooseMesh.C:2585
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
virtual Elem * add_elem(Elem *e)=0
const std::string & type() const
Get the type of this class.
Definition: MooseBase.h:51
std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap > > _elem_type_to_p_refinement_side_map
Definition: MooseMesh.h:1758
std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap > > _elem_type_to_p_coarsening_map
Definition: MooseMesh.h:1782
void set_mesh_dimension(unsigned char d)
void setCurrentSubdomainID(SubdomainID i)
set the current subdomain ID
Definition: Assembly.h:385
std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap > > _elem_type_to_p_refinement_map
Definition: MooseMesh.h:1756
IntRange< unsigned short > node_index_range() const
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094
virtual const Node * node_ptr(const dof_id_type i) const=0
virtual ElemType type() const=0
libMesh::QBase *const & writeableQRuleFace()
Returns the reference to the current quadrature being used on a current face.
Definition: Assembly.h:300

◆ buildRefinementAndCoarseningMaps()

void MooseMesh::buildRefinementAndCoarseningMaps ( Assembly assembly)

Create the refinement and coarsening maps necessary for projection of stateful material properties when using adaptivity.

Parameters
assemblyPointer to the Assembly object for this Mesh.

Definition at line 2457 of file MooseMesh.C.

Referenced by FEProblemBase::initialSetup().

2458 {
2459  TIME_SECTION("buildRefinementAndCoarseningMaps", 5, "Building Refinement And Coarsening Maps");
2460  if (doingPRefinement())
2462  else
2464 }
void buildHRefinementAndCoarseningMaps(Assembly *assembly)
Definition: MooseMesh.C:2306
bool doingPRefinement() const
Query whether we have p-refinement.
Definition: MooseMesh.h:1352
void buildPRefinementAndCoarseningMaps(Assembly *assembly)
Definition: MooseMesh.C:2363

◆ buildRefinementMap()

void MooseMesh::buildRefinementMap ( const Elem elem,
libMesh::QBase qrule,
libMesh::QBase qrule_face,
int  parent_side,
int  child,
int  child_side 
)
private

Build the refinement map for a given element type.

This will tell you what quadrature points to copy from and to for stateful material properties on newly created elements from Adaptivity.

Parameters
elemThe element that represents the element type you need the refinement map for.
qruleThe quadrature rule in use.
qrule_faceThe current face quadrature rule
parent_sideThe side of the parent to map (-1 if not mapping parent sides)
childThe child number (-1 if not mapping child internal sides)
child_sideThe side number of the child (-1 if not mapping sides)

Definition at line 2467 of file MooseMesh.C.

Referenced by buildHRefinementAndCoarseningMaps().

2473 {
2474  TIME_SECTION("buildRefinementMap", 5, "Building Refinement Map");
2475 
2476  if (child == -1) // Doing volume mapping or parent side mapping
2477  {
2478  mooseAssert(parent_side == child_side,
2479  "Parent side must match child_side if not passing a specific child!");
2480 
2481  std::pair<int, ElemType> the_pair(parent_side, elem.type());
2482 
2483  if (_elem_type_to_refinement_map.find(the_pair) != _elem_type_to_refinement_map.end())
2484  mooseError("Already built a qp refinement map!");
2485 
2486  std::vector<std::pair<unsigned int, QpMap>> coarsen_map;
2487  std::vector<std::vector<QpMap>> & refinement_map = _elem_type_to_refinement_map[the_pair];
2489  &elem, qrule, qrule_face, refinement_map, coarsen_map, parent_side, child, child_side);
2490  }
2491  else // Need to map a child side to parent volume qps
2492  {
2493  std::pair<int, int> child_pair(child, child_side);
2494 
2497  _elem_type_to_child_side_refinement_map[elem.type()].find(child_pair) !=
2499  mooseError("Already built a qp refinement map!");
2500 
2501  std::vector<std::pair<unsigned int, QpMap>> coarsen_map;
2502  std::vector<std::vector<QpMap>> & refinement_map =
2505  &elem, qrule, qrule_face, refinement_map, coarsen_map, parent_side, child, child_side);
2506  }
2507 }
std::map< libMesh::ElemType, std::map< std::pair< int, int >, std::vector< std::vector< QpMap > > > > _elem_type_to_child_side_refinement_map
Holds mappings for "internal" child sides to parent volume. The second key is (child, child_side).
Definition: MooseMesh.h:1762
std::map< std::pair< int, libMesh::ElemType >, std::vector< std::vector< QpMap > > > _elem_type_to_refinement_map
Holds mappings for volume to volume and parent side to child side Map key:
Definition: MooseMesh.h:1753
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.
void findAdaptivityQpMaps(const Elem *template_elem, libMesh::QBase &qrule, libMesh::QBase &qrule_face, std::vector< std::vector< QpMap >> &refinement_map, std::vector< std::pair< unsigned int, QpMap >> &coarsen_map, int parent_side, int child, int child_side)
Given an elem type, get maps that tell us what qp&#39;s are closest to each other between a parent and it...
Definition: MooseMesh.C:2616
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094
virtual ElemType type() const=0

◆ buildSideList() [1/2]

void MooseMesh::buildSideList ( std::vector< dof_id_type > &  el,
std::vector< unsigned short int > &  sl,
std::vector< boundary_id_type > &  il 
)

Calls BoundaryInfo::build_side_list().

Fills in the three passed vectors with list logical (element, side, id) tuples. This function will eventually be deprecated in favor of the one below, which returns a single std::vector of (elem-id, side-id, bc-id) tuples instead.

Definition at line 2985 of file MooseMesh.C.

Referenced by InterfaceQpUserObjectBase::initialSetup().

2988 {
2989 #ifdef LIBMESH_ENABLE_DEPRECATED
2990  mooseDeprecated("The version of MooseMesh::buildSideList() taking three arguments is "
2991  "deprecated, call the version that returns a vector of tuples instead.");
2992  getMesh().get_boundary_info().build_side_list(el, sl, il);
2993 #else
2994  libmesh_ignore(el);
2995  libmesh_ignore(sl);
2996  libmesh_ignore(il);
2997  mooseError("The version of MooseMesh::buildSideList() taking three "
2998  "arguments is not available in your version of libmesh, call the "
2999  "version that returns a vector of tuples instead.");
3000 #endif
3001 }
void mooseDeprecated(Args &&... args) const
const BoundaryInfo & get_boundary_info() const
void build_side_list(std::vector< dof_id_type > &element_id_list, std::vector< unsigned short int > &side_list, std::vector< boundary_id_type > &bc_id_list) const
void libmesh_ignore(const Args &...)
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.

◆ buildSideList() [2/2]

std::vector< std::tuple< dof_id_type, unsigned short int, boundary_id_type > > MooseMesh::buildSideList ( )

As above, but uses the non-deprecated std::tuple interface.

Definition at line 3004 of file MooseMesh.C.

3005 {
3007 }
const BoundaryInfo & get_boundary_info() const
void build_side_list(std::vector< dof_id_type > &element_id_list, std::vector< unsigned short int > &side_list, std::vector< boundary_id_type > &bc_id_list) const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443

◆ buildTypedMesh()

template<typename T >
std::unique_ptr< T > MooseMesh::buildTypedMesh ( unsigned int  dim = libMesh::invalid_uint)

Shortcut method to construct a unique pointer to a libMesh mesh instance.

The created derived-from-MeshBase object will have its allow_remote_element_removal flag set to whatever our value is. We will also attach any geometric RelationshipManagers that have been requested by our simulation objects to the MeshBase object. If the parameter dim is not provided, then its value will be taken from the input file mesh block.

Definition at line 2090 of file MooseMesh.h.

Referenced by MeshGenerator::buildDistributedMesh(), and MeshGenerator::buildReplicatedMesh().

2091 {
2092  // If the requested mesh type to build doesn't match our current value for _use_distributed_mesh,
2093  // then we need to make sure to make our state consistent because other objects, like the periodic
2094  // boundary condition action, will be querying isDistributedMesh()
2095  if (_use_distributed_mesh != std::is_same<T, libMesh::DistributedMesh>::value)
2096  {
2097  if (getMeshPtr())
2098  mooseError("A MooseMesh object is being asked to build a libMesh mesh that is a different "
2099  "parallel type than the libMesh mesh that it wraps. This is not allowed. Please "
2100  "create another MooseMesh object to wrap the new libMesh mesh");
2101  setParallelType(MeshType<T>::value);
2102  }
2103 
2104  if (dim == libMesh::invalid_uint)
2105  {
2106  if (isParamValid("dim"))
2107  dim = getParam<MooseEnum>("dim");
2108  else
2109  // Legacy selection of the default for the 'dim' parameter
2110  dim = 1;
2111  }
2112 
2113  auto mesh = std::make_unique<T>(_communicator, dim);
2114 
2115  if (!getParam<bool>("allow_renumbering"))
2116  mesh->allow_renumbering(false);
2117 
2118  mesh->allow_remote_element_removal(_allow_remote_element_removal);
2119  _app.attachRelationshipManagers(*mesh, *this);
2120 
2122  {
2123  // Check of partitioner is supplied (not allowed if custom partitioner is used)
2124  if (!parameters().isParamSetByAddParam("partitioner"))
2125  mooseError("If partitioner block is provided, partitioner keyword cannot be used!");
2126  // Set custom partitioner
2127  if (!_custom_partitioner.get())
2128  mooseError("Custom partitioner requested but not set!");
2129  mesh->partitioner() = _custom_partitioner->clone();
2130  }
2131  else
2132  setPartitionerHelper(mesh.get());
2133 
2134  return mesh;
2135 }
const unsigned int invalid_uint
void setParallelType(ParallelType parallel_type)
Allow to change parallel type.
Definition: MooseMesh.h:2144
bool _custom_partitioner_requested
Definition: MooseMesh.h:1441
MeshBase & mesh
static constexpr std::size_t dim
This is the dimension of all vector and tensor datastructures used in MOOSE.
Definition: Moose.h:152
const Parallel::Communicator & _communicator
void setPartitionerHelper(MeshBase *mesh=nullptr)
Definition: MooseMesh.C:3623
bool isParamValid(const std::string &name) const
Test if the supplied parameter is valid.
void attachRelationshipManagers(Moose::RelationshipManagerType rm_type, bool attach_geometric_rm_final=false)
Attach the relationship managers of the given type Note: Geometric relationship managers that are sup...
Definition: MooseApp.C:3173
const MeshBase * getMeshPtr() const
Definition: MooseMesh.C:3437
bool _use_distributed_mesh
False by default.
Definition: MooseMesh.h:1428
bool _allow_remote_element_removal
Whether to allow removal of remote elements.
Definition: MooseMesh.h:1828
MooseApp & _app
The MOOSE application this is associated with.
Definition: MooseBase.h:84
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.
const InputParameters & parameters() const
Get the parameters of the object.
std::unique_ptr< libMesh::Partitioner > _custom_partitioner
The custom partitioner.
Definition: MooseMesh.h:1440

◆ cacheChangedLists()

void MooseMesh::cacheChangedLists ( )

Cache information about what elements were refined and coarsened in the previous step.

Definition at line 910 of file MooseMesh.C.

Referenced by FEProblemBase::meshChanged().

911 {
912  TIME_SECTION("cacheChangedLists", 5, "Caching Changed Lists");
913 
914  ConstElemRange elem_range(getMesh().local_elements_begin(), getMesh().local_elements_end(), 1);
915  CacheChangedListsThread cclt(*this);
916  Threads::parallel_reduce(elem_range, cclt);
917 
919 
920  _refined_elements = std::make_unique<ConstElemPointerRange>(cclt._refined_elements.begin(),
921  cclt._refined_elements.end());
922  _coarsened_elements = std::make_unique<ConstElemPointerRange>(cclt._coarsened_elements.begin(),
923  cclt._coarsened_elements.end());
924  _coarsened_element_children = cclt._coarsened_element_children;
925 }
void parallel_reduce(const Range &range, Body &body, const Partitioner &)
std::unique_ptr< ConstElemPointerRange > _refined_elements
The elements that were just refined.
Definition: MooseMesh.h:1475
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
std::unique_ptr< ConstElemPointerRange > _coarsened_elements
The elements that were just coarsened.
Definition: MooseMesh.h:1478
std::map< const Elem *, std::vector< const Elem * > > _coarsened_element_children
Map of Parent elements to child elements for elements that were just coarsened.
Definition: MooseMesh.h:1485

◆ cacheFaceInfoVariableOwnership()

void MooseMesh::cacheFaceInfoVariableOwnership ( ) const

Cache if variables live on the elements connected by the FaceInfo objects.

The following paragraph of code assigns the VarFaceNeighbors

  1. The face is an internal face of this variable if it is defined on the elem and neighbor subdomains
  2. The face is an invalid face of this variable if it is neither defined on the elem nor the neighbor subdomains
  3. If not 1. or 2. then this is a boundary for this variable and the else clause applies

Definition at line 3936 of file MooseMesh.C.

Referenced by setupFiniteVolumeMeshData().

3937 {
3938  mooseAssert(
3939  !Threads::in_threads,
3940  "Performing writes to faceInfo variable association maps. This must be done unthreaded!");
3941 
3942  const unsigned int num_eqs = _app.feProblem().es().n_systems();
3943 
3944  auto face_lambda = [this](const SubdomainID elem_subdomain_id,
3945  const SubdomainID neighbor_subdomain_id,
3946  SystemBase & sys,
3947  std::vector<std::vector<FaceInfo::VarFaceNeighbors>> & face_type_vector)
3948  {
3949  face_type_vector[sys.number()].resize(sys.nVariables(), FaceInfo::VarFaceNeighbors::NEITHER);
3950  const auto & variables = sys.getVariables(0);
3951 
3952  for (const auto & var : variables)
3953  {
3954  const unsigned int var_num = var->number();
3955  const unsigned int sys_num = var->sys().number();
3956  std::set<SubdomainID> var_subdomains = var->blockIDs();
3966  bool var_defined_elem = var_subdomains.find(elem_subdomain_id) != var_subdomains.end();
3967  bool var_defined_neighbor =
3968  var_subdomains.find(neighbor_subdomain_id) != var_subdomains.end();
3969  if (var_defined_elem && var_defined_neighbor)
3970  face_type_vector[sys_num][var_num] = FaceInfo::VarFaceNeighbors::BOTH;
3971  else if (!var_defined_elem && !var_defined_neighbor)
3972  face_type_vector[sys_num][var_num] = FaceInfo::VarFaceNeighbors::NEITHER;
3973  else
3974  {
3975  // this is a boundary face for this variable, set elem or neighbor
3976  if (var_defined_elem)
3977  face_type_vector[sys_num][var_num] = FaceInfo::VarFaceNeighbors::ELEM;
3978  else if (var_defined_neighbor)
3979  face_type_vector[sys_num][var_num] = FaceInfo::VarFaceNeighbors::NEIGHBOR;
3980  else
3981  mooseError("Should never get here");
3982  }
3983  }
3984  };
3985 
3986  // We loop through the faces and check if they are internal, boundary or external to
3987  // the variables in the problem
3988  for (FaceInfo & face : _all_face_info)
3989  {
3990  const SubdomainID elem_subdomain_id = face.elemSubdomainID();
3991  const SubdomainID neighbor_subdomain_id = face.neighborSubdomainID();
3992 
3993  auto & face_type_vector = face.faceType();
3994 
3995  face_type_vector.clear();
3996  face_type_vector.resize(num_eqs);
3997 
3998  // First, we check the variables in the solver systems (linear/nonlinear)
3999  for (const auto i : make_range(_app.feProblem().numSolverSystems()))
4000  face_lambda(elem_subdomain_id,
4001  neighbor_subdomain_id,
4003  face_type_vector);
4004 
4005  // Then we check the variables in the auxiliary system
4006  face_lambda(elem_subdomain_id,
4007  neighbor_subdomain_id,
4009  face_type_vector);
4010  }
4011 }
std::vector< FaceInfo > _all_face_info
FaceInfo object storing information for face based loops.
Definition: MooseMesh.h:1604
unsigned int n_systems() const
Base class for a system (of equations)
Definition: SystemBase.h:84
FEProblemBase & feProblem() const
Definition: MooseApp.C:1928
This data structure is used to store geometric and variable related metadata about each cell face in ...
Definition: FaceInfo.h:36
virtual libMesh::EquationSystems & es() override
MooseApp & _app
The MOOSE application this is associated with.
Definition: MooseBase.h:84
AuxiliarySystem & getAuxiliarySystem()
IntRange< T > make_range(T beg, T end)
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.
SolverSystem & getSolverSystem(unsigned int sys_num)
Get non-constant reference to a solver system.
virtual std::size_t numSolverSystems() const override

◆ cacheFVElementalDoFs()

void MooseMesh::cacheFVElementalDoFs ( ) const

Cache the DoF indices for FV variables on each element.

These indices are used to speed up the setup loops of finite volume systems.

Definition at line 4014 of file MooseMesh.C.

Referenced by setupFiniteVolumeMeshData().

4015 {
4016  mooseAssert(!Threads::in_threads,
4017  "Performing writes to elemInfo dof indices. This must be done unthreaded!");
4018 
4019  auto elem_lambda = [](const ElemInfo & elem_info,
4020  SystemBase & sys,
4021  std::vector<std::vector<dof_id_type>> & dof_vector)
4022  {
4023  if (sys.nFVVariables())
4024  {
4025  dof_vector[sys.number()].resize(sys.nVariables(), libMesh::DofObject::invalid_id);
4026  const auto & variables = sys.getVariables(0);
4027 
4028  for (const auto & var : variables)
4029  if (var->isFV())
4030  {
4031  const auto & var_subdomains = var->blockIDs();
4032 
4033  // We will only cache for FV variables and if they live on the current subdomain
4034  if (var_subdomains.find(elem_info.subdomain_id()) != var_subdomains.end())
4035  {
4036  std::vector<dof_id_type> indices;
4037  var->dofMap().dof_indices(elem_info.elem(), indices, var->number());
4038  mooseAssert(indices.size() == 1, "We expect to have only one dof per element!");
4039  dof_vector[sys.number()][var->number()] = indices[0];
4040  }
4041  }
4042  }
4043  };
4044 
4045  const unsigned int num_eqs = _app.feProblem().es().n_systems();
4046 
4047  // We loop through the elements in the mesh and cache the dof indices
4048  // for the corresponding variables.
4049  for (auto & ei_pair : _elem_to_elem_info)
4050  {
4051  auto & elem_info = ei_pair.second;
4052  auto & dof_vector = elem_info.dofIndices();
4053 
4054  dof_vector.clear();
4055  dof_vector.resize(num_eqs);
4056 
4057  // First, we cache the dof indices for the variables in the solver systems (linear, nonlinear)
4058  for (const auto i : make_range(_app.feProblem().numSolverSystems()))
4059  elem_lambda(elem_info, _app.feProblem().getSolverSystem(i), dof_vector);
4060 
4061  // Then we cache the dof indices for the auxvariables
4062  elem_lambda(elem_info, _app.feProblem().getAuxiliarySystem(), dof_vector);
4063  }
4064 }
unsigned int n_systems() const
const Elem * elem() const
Definition: ElemInfo.h:34
Base class for a system (of equations)
Definition: SystemBase.h:84
FEProblemBase & feProblem() const
Definition: MooseApp.C:1928
virtual libMesh::EquationSystems & es() override
static const dof_id_type invalid_id
MooseApp & _app
The MOOSE application this is associated with.
Definition: MooseBase.h:84
AuxiliarySystem & getAuxiliarySystem()
std::unordered_map< dof_id_type, ElemInfo > _elem_to_elem_info
Map connecting elems with their corresponding ElemInfo, we use the element ID as the key...
Definition: MooseMesh.h:1596
const std::vector< std::vector< dof_id_type > > & dofIndices() const
Definition: ElemInfo.h:39
IntRange< T > make_range(T beg, T end)
SolverSystem & getSolverSystem(unsigned int sys_num)
Get non-constant reference to a solver system.
Class used for caching additional information for elements such as the volume and centroid...
Definition: ElemInfo.h:25
virtual std::size_t numSolverSystems() const override
SubdomainID subdomain_id() const
We return the subdomain ID of the corresponding libmesh element.
Definition: ElemInfo.h:43

◆ cacheInfo()

void MooseMesh::cacheInfo ( )
protected

Definition at line 1404 of file MooseMesh.C.

Referenced by update().

1405 {
1406  TIME_SECTION("cacheInfo", 3);
1407 
1408  _has_lower_d = false;
1409  _sub_to_data.clear();
1411  _block_node_list.clear();
1414  _lower_d_interior_blocks.clear();
1415  _lower_d_boundary_blocks.clear();
1416 
1417  auto & mesh = getMesh();
1418 
1419  // TODO: Thread this!
1420  for (const auto & elem : mesh.element_ptr_range())
1421  {
1422  const Elem * ip_elem = elem->interior_parent();
1423 
1424  if (ip_elem)
1425  {
1426  if (elem->active())
1427  _sub_to_data[elem->subdomain_id()].is_lower_d = true;
1428  unsigned int ip_side = ip_elem->which_side_am_i(elem);
1429 
1430  // For some grid sequencing tests: ip_side == libMesh::invalid_uint
1431  if (ip_side != libMesh::invalid_uint)
1432  {
1433  auto pair = std::make_pair(ip_elem, ip_side);
1435  std::pair<std::pair<const Elem *, unsigned short int>, const Elem *>(pair, elem));
1437  std::pair<const Elem *, unsigned short int>(elem, ip_side));
1438 
1439  auto id = elem->subdomain_id();
1440  if (ip_elem->neighbor_ptr(ip_side))
1441  {
1442  if (mesh.subdomain_name(id).find("INTERNAL_SIDE_LOWERD_SUBDOMAIN_") != std::string::npos)
1443  _lower_d_interior_blocks.insert(id);
1444  }
1445  else
1446  {
1447  if (mesh.subdomain_name(id).find("BOUNDARY_SIDE_LOWERD_SUBDOMAIN_") != std::string::npos)
1448  _lower_d_boundary_blocks.insert(id);
1449  }
1450  }
1451  }
1452 
1453  for (unsigned int nd = 0; nd < elem->n_nodes(); ++nd)
1454  {
1455  Node & node = *elem->node_ptr(nd);
1456  _block_node_list[node.id()].insert(elem->subdomain_id());
1457  }
1458  }
1461 
1462  for (const auto & elem : mesh.active_local_element_ptr_range())
1463  {
1464  SubdomainID subdomain_id = elem->subdomain_id();
1465  auto & sub_data = _sub_to_data[subdomain_id];
1466  for (unsigned int side = 0; side < elem->n_sides(); side++)
1467  {
1468  std::vector<BoundaryID> boundary_ids = getBoundaryIDs(elem, side);
1469  sub_data.boundary_ids.insert(boundary_ids.begin(), boundary_ids.end());
1470 
1471  Elem * neig = elem->neighbor_ptr(side);
1472  if (neig)
1473  {
1474  _neighbor_subdomain_boundary_ids[neig->subdomain_id()].insert(boundary_ids.begin(),
1475  boundary_ids.end());
1476  SubdomainID neighbor_subdomain_id = neig->subdomain_id();
1477  if (neighbor_subdomain_id != subdomain_id)
1478  sub_data.neighbor_subs.insert(neighbor_subdomain_id);
1479  }
1480  }
1481  }
1482 
1483  for (const auto blk_id : _mesh_subdomains)
1484  {
1485  auto & sub_data = _sub_to_data[blk_id];
1486  _communicator.set_union(sub_data.neighbor_subs);
1487  _communicator.set_union(sub_data.boundary_ids);
1488  _communicator.max(sub_data.is_lower_d);
1489  if (sub_data.is_lower_d)
1490  _has_lower_d = true;
1492  }
1493 }
const std::set< BoundaryID > & getBoundaryIDs() const
Returns a const reference to a set of all user-specified boundary IDs.
Definition: MooseMesh.C:2972
const unsigned int invalid_uint
const Elem * interior_parent() const
std::unordered_map< const Elem *, unsigned short int > _lower_d_elem_to_higher_d_elem_side
Definition: MooseMesh.h:1812
unsigned int which_side_am_i(const Elem *e) const
MeshBase & mesh
std::unordered_map< std::pair< const Elem *, unsigned short int >, const Elem * > _higher_d_elem_side_to_lower_d_elem
Holds a map from a high-order element side to its corresponding lower-d element.
Definition: MooseMesh.h:1811
bool _has_lower_d
Whether there are any lower-dimensional blocks that are manifolds of higher-dimensional block faces...
Definition: MooseMesh.h:1816
std::map< dof_id_type, std::set< SubdomainID > > _block_node_list
list of nodes that belongs to a specified block (domain)
Definition: MooseMesh.h:1553
const Parallel::Communicator & _communicator
std::set< SubdomainID > _lower_d_boundary_blocks
Mesh blocks for boundary lower-d elements in different types.
Definition: MooseMesh.h:1808
std::unordered_map< SubdomainID, std::set< BoundaryID > > _neighbor_subdomain_boundary_ids
Holds a map from neighbor subomdain ids to the boundary ids that are attached to it.
Definition: MooseMesh.h:1803
std::set< SubdomainID > _lower_d_interior_blocks
Mesh blocks for interior lower-d elements in different types.
Definition: MooseMesh.h:1806
dof_id_type id() const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
virtual unsigned int n_nodes() const=0
std::string & subdomain_name(subdomain_id_type id)
virtual unsigned int n_sides() const=0
const Elem * neighbor_ptr(unsigned int i) const
subdomain_id_type subdomain_id() const
void max(const T &r, T &o, Request &req) const
const Node * node_ptr(const unsigned int i) const
virtual const Node & node(const dof_id_type i) const
Various accessors (pointers/references) for Node "i".
Definition: MooseMesh.C:817
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094
std::set< SubdomainID > _mesh_subdomains
A set of subdomain IDs currently present in the mesh.
Definition: MooseMesh.h:1516
std::unordered_map< SubdomainID, SubdomainData > _sub_to_data
Holds a map from subdomain ids to associated data.
Definition: MooseMesh.h:1800
bool active() const
void set_union(T &data, const unsigned int root_id) const

◆ callMooseError()

void MooseBase::callMooseError ( std::string  msg,
const bool  with_prefix 
) const
inherited

Calls moose error with the message msg.

Will prefix the message with the subapp name if one exists.

If with_prefix, then add the prefix from errorPrefix() to the error.

Definition at line 33 of file MooseBase.C.

Referenced by InputParameters::callMooseErrorHelper(), MooseBaseErrorInterface::mooseDocumentedError(), MooseBaseErrorInterface::mooseError(), MooseBaseErrorInterface::mooseErrorNonPrefixed(), and MooseBaseParameterInterface::paramError().

34 {
36  const std::string prefix = _app.isUltimateMaster() ? "" : _app.name();
37  if (with_prefix)
38  msg = errorPrefix("error") + msg;
39  moose::internal::mooseErrorRaw(msg, prefix);
40 }
bool isUltimateMaster() const
Whether or not this app is the ultimate master app.
Definition: MooseApp.h:847
virtual const std::string & name() const
Get the name of the class.
Definition: MooseBase.h:57
std::string errorPrefix(const std::string &error_type) const
Definition: MooseBase.C:43
MooseApp & _app
The MOOSE application this is associated with.
Definition: MooseBase.h:84
void mooseErrorRaw(std::string msg, const std::string prefix="")
Definition: MooseError.C:53
void mooseConsole()
Send current output buffer to Console output objects.
OutputWarehouse & getOutputWarehouse()
Get the OutputWarehouse objects.
Definition: MooseApp.C:2381

◆ changeBoundaryId() [1/2]

void MooseMesh::changeBoundaryId ( const boundary_id_type  old_id,
const boundary_id_type  new_id,
bool  delete_prev 
)

Change all the boundary IDs for a given side from old_id to new_id.

If delete_prev is true, also actually remove the side with old_id from the BoundaryInfo object.

Definition at line 2757 of file MooseMesh.C.

2760 {
2761  TIME_SECTION("changeBoundaryId", 6);
2762  changeBoundaryId(getMesh(), old_id, new_id, delete_prev);
2763 }
void changeBoundaryId(const boundary_id_type old_id, const boundary_id_type new_id, bool delete_prev)
Change all the boundary IDs for a given side from old_id to new_id.
Definition: MooseMesh.C:2757
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443

◆ changeBoundaryId() [2/2]

static void MooseMesh::changeBoundaryId ( MeshBase &  mesh,
const boundary_id_type  old_id,
const boundary_id_type  new_id,
bool  delete_prev 
)
static

Change all the boundary IDs for a given side from old_id to new_id for the given mesh.

If delete_prev is true, also actually remove the side with old_id from the BoundaryInfo object.

◆ checkCoordinateSystems()

void MooseMesh::checkCoordinateSystems ( )

Performs a sanity check for every element in the mesh.

If an element dimension is 3 and the corresponding coordinate system is RZ, then this will error. If an element dimension is greater than 1 and the corresponding system is RPSHERICAL then this will error

Definition at line 4276 of file MooseMesh.C.

Referenced by FEProblemBase::checkCoordinateSystems().

4277 {
4278  for (const auto & elem : getMesh().element_ptr_range())
4279  {
4280  SubdomainID sid = elem->subdomain_id();
4281  if (_coord_sys[sid] == Moose::COORD_RZ && elem->dim() == 3)
4282  mooseError("An RZ coordinate system was requested for subdomain " + Moose::stringify(sid) +
4283  " which contains 3D elements.");
4284  if (_coord_sys[sid] == Moose::COORD_RSPHERICAL && elem->dim() > 1)
4285  mooseError("An RSPHERICAL coordinate system was requested for subdomain " +
4286  Moose::stringify(sid) + " which contains 2D or 3D elements.");
4287  }
4288 }
std::map< SubdomainID, Moose::CoordinateSystemType > & _coord_sys
Type of coordinate system per subdomain.
Definition: MooseMesh.h:1858
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
std::string stringify(const T &t)
conversion to string
Definition: Conversion.h:64
subdomain_id_type subdomain_id() const
virtual unsigned short dim() const=0
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094

◆ checkDuplicateSubdomainNames()

void MooseMesh::checkDuplicateSubdomainNames ( )
private

Loop through all subdomain IDs and check if there is name duplication used for the subdomains with same ID.

Throw out an error if any name duplication is found.

Definition at line 4306 of file MooseMesh.C.

Referenced by prepare().

4307 {
4308  std::map<SubdomainName, SubdomainID> subdomain;
4309  for (const auto & sbd_id : _mesh_subdomains)
4310  {
4311  std::string sub_name = getSubdomainName(sbd_id);
4312  if (!sub_name.empty() && subdomain.count(sub_name) > 0)
4313  mooseError("The subdomain name ",
4314  sub_name,
4315  " is used for both subdomain with ID=",
4316  subdomain[sub_name],
4317  " and ID=",
4318  sbd_id,
4319  ", Please rename one of them!");
4320  else
4321  subdomain[sub_name] = sbd_id;
4322  }
4323 }
const std::string & getSubdomainName(SubdomainID subdomain_id) const
Return the name of a block given an id.
Definition: MooseMesh.C:1758
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.
std::set< SubdomainID > _mesh_subdomains
A set of subdomain IDs currently present in the mesh.
Definition: MooseMesh.h:1516

◆ clearQuadratureNodes()

void MooseMesh::clearQuadratureNodes ( )

Clear out any existing quadrature nodes.

Most likely called before re-adding them.

Definition at line 1677 of file MooseMesh.C.

Referenced by DisplacedProblem::meshChanged(), GeometricSearchData::reinit(), and ~MooseMesh().

1678 {
1679  // Delete all the quadrature nodes
1680  for (auto & it : _quadrature_nodes)
1681  delete it.second;
1682 
1683  _quadrature_nodes.clear();
1685  _extra_bnd_nodes.clear();
1686 }
std::map< dof_id_type, Node * > _quadrature_nodes
Definition: MooseMesh.h:1547
std::vector< BndNode > _extra_bnd_nodes
Definition: MooseMesh.h:1550
std::map< dof_id_type, std::map< unsigned int, std::map< dof_id_type, Node * > > > _elem_to_side_to_qp_to_quadrature_nodes
Definition: MooseMesh.h:1549

◆ clone()

MooseMesh & MooseMesh::clone ( ) const
virtual

Clone method.

Allocates memory you are responsible to clean up.

Definition at line 2817 of file MooseMesh.C.

Referenced by TiledMesh::buildMesh().

2818 {
2819  mooseError("MooseMesh::clone() is no longer supported, use MooseMesh::safeClone() instead.");
2820 }
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.

◆ coarsenedElementChildren()

const std::vector< const Elem * > & MooseMesh::coarsenedElementChildren ( const Elem elem) const

Get the newly removed children element ids for an element that was just coarsened.

Parameters
elemPointer to the parent element that was coarsened to.
Returns
The child element ids in Elem::child() order.

Definition at line 940 of file MooseMesh.C.

Referenced by FEProblemBase::meshChanged(), ProjectMaterialProperties::onBoundary(), and ProjectMaterialProperties::onElement().

941 {
942  auto elem_to_child_pair = _coarsened_element_children.find(elem);
943  mooseAssert(elem_to_child_pair != _coarsened_element_children.end(), "Missing element in map");
944  return elem_to_child_pair->second;
945 }
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094
std::map< const Elem *, std::vector< const Elem * > > _coarsened_element_children
Map of Parent elements to child elements for elements that were just coarsened.
Definition: MooseMesh.h:1485

◆ coarsenedElementRange()

ConstElemPointerRange * MooseMesh::coarsenedElementRange ( ) const

Return a range that is suitable for threaded execution over elements that were just coarsened.

Note that these are the Parent elements that are now set to be INACTIVE. Their children are the elements that were just removed. Use coarsenedElementChildren() to get the element IDs for the children that were just removed for a particular parent element.

Definition at line 934 of file MooseMesh.C.

Referenced by FEProblemBase::meshChanged().

935 {
936  return _coarsened_elements.get();
937 }
std::unique_ptr< ConstElemPointerRange > _coarsened_elements
The elements that were just coarsened.
Definition: MooseMesh.h:1478

◆ computeFiniteVolumeCoords()

void MooseMesh::computeFiniteVolumeCoords ( ) const

Compute the face coordinate value for all FaceInfo and ElemInfo objects.

'Coordinate' here means a coordinate value associated with the coordinate system. For Cartesian coordinate systems, 'coordinate' is simply '1'; in RZ, '2*pi*r', and in spherical, '4*pi*r^2'

Definition at line 3872 of file MooseMesh.C.

Referenced by setupFiniteVolumeMeshData().

3873 {
3875  mooseError("Trying to compute face- and elem-info coords when the information is dirty");
3876 
3877  for (auto & fi : _all_face_info)
3878  {
3879  // get elem & neighbor elements, and set subdomain ids
3880  const SubdomainID elem_subdomain_id = fi.elemSubdomainID();
3881  const SubdomainID neighbor_subdomain_id = fi.neighborSubdomainID();
3882 
3884  *this, elem_subdomain_id, fi.faceCentroid(), fi.faceCoord(), neighbor_subdomain_id);
3885  }
3886 
3887  for (auto & ei : _elem_to_elem_info)
3889  *this, ei.second.subdomain_id(), ei.second.centroid(), ei.second.coordFactor());
3890 }
std::vector< FaceInfo > _all_face_info
FaceInfo object storing information for face based loops.
Definition: MooseMesh.h:1604
bool _finite_volume_info_dirty
Definition: MooseMesh.h:1615
void coordTransformFactor(const SubProblem &s, SubdomainID sub_id, const P &point, C &factor, SubdomainID neighbor_sub_id=libMesh::Elem::invalid_subdomain_id)
Computes a conversion multiplier for use when computing integraals for the current coordinate system ...
Definition: Assembly.C:42
std::unordered_map< dof_id_type, ElemInfo > _elem_to_elem_info
Map connecting elems with their corresponding ElemInfo, we use the element ID as the key...
Definition: MooseMesh.h:1596
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.

◆ connectControllableParams()

void MooseBaseParameterInterface::connectControllableParams ( const std::string &  parameter,
const std::string &  object_type,
const std::string &  object_name,
const std::string &  object_parameter 
) const
inherited

Connect controllable parameter of this action with the controllable parameters of the objects added by this action.

Parameters
parameterName of the controllable parameter of this action
object_typeType of the object added by this action.
object_nameName of the object added by this action.
object_parameterName of the parameter of the object.

Definition at line 33 of file MooseBaseParameterInterface.C.

37 {
38  MooseObjectParameterName primary_name(uniqueName(), parameter);
39  const auto base_type = _factory.getValidParams(object_type).get<std::string>("_moose_base");
40  MooseObjectParameterName secondary_name(base_type, object_name, object_parameter);
42  primary_name, secondary_name);
43 
44  const auto & tags = _pars.get<std::vector<std::string>>("control_tags");
45  for (const auto & tag : tags)
46  {
47  if (!tag.empty())
48  {
49  // Only adds the parameter with the different control tags if the derived class
50  // properly registers the parameter to its own syntax
51  MooseObjectParameterName tagged_name(tag, _moose_base.name(), parameter);
53  tagged_name, secondary_name, /*error_on_empty=*/false);
54  }
55  }
56 }
void addControllableParameterConnection(const MooseObjectParameterName &primary, const MooseObjectParameterName &secondary, bool error_on_empty=true)
Method for linking control parameters of different names.
const MooseBase & _moose_base
The MooseBase object that inherits this class.
std::vector< std::pair< R1, R2 > > get(const std::string &param1, const std::string &param2) const
Combine two vector parameters into a single vector of pairs.
InputParameterWarehouse & getInputParameterWarehouse()
Get the InputParameterWarehouse for MooseObjects.
Definition: MooseApp.C:2839
InputParameters getValidParams(const std::string &name) const
Get valid parameters for the object.
Definition: Factory.C:68
virtual const std::string & name() const
Get the name of the class.
Definition: MooseBase.h:57
MooseApp & getMooseApp() const
Get the MooseApp this class is associated with.
Definition: MooseBase.h:45
Factory & _factory
The Factory associated with the MooseApp.
MooseObjectName uniqueName() const
The unique name for accessing input parameters of this object in the InputParameterWarehouse.
const InputParameters & _pars
Parameters of this object, references the InputParameters stored in the InputParametersWarehouse.
A class for storing an input parameter name.

◆ coordTransform()

MooseAppCoordTransform & MooseMesh::coordTransform ( )
inline
Returns
the coordinate transformation object that describes how to transform this problem's coordinate system into the canonical/reference coordinate system

Definition at line 1888 of file MooseMesh.h.

Referenced by FEProblemBase::checkProblemIntegrity(), and FEProblemBase::coordTransform().

1889 {
1890  mooseAssert(_coord_transform, "The coordinate transformation object is null.");
1891  return *_coord_transform;
1892 }
std::unique_ptr< MooseAppCoordTransform > _coord_transform
A coordinate transformation object that describes how to transform this problem&#39;s coordinate system i...
Definition: MooseMesh.h:1868

◆ declareManagedRestartableDataWithContext()

template<typename T , typename... Args>
Restartable::ManagedValue< T > Restartable::declareManagedRestartableDataWithContext ( const std::string &  data_name,
void context,
Args &&...  args 
)
protectedinherited

Declares a piece of "managed" restartable data and initialize it.

Here, "managed" restartable data means that the caller can destruct this data upon destruction of the return value of this method. Therefore, this ManagedValue<T> wrapper should survive after the final calls to dataStore() for it. That is... at the very end.

This is needed for objects whose destruction ordering is important, and enables natural c++ destruction in reverse construction order of the object that declares it.

See delcareRestartableData and declareRestartableDataWithContext for more information.

Definition at line 276 of file Restartable.h.

279 {
280  auto & data_ptr =
281  declareRestartableDataHelper<T>(data_name, context, std::forward<Args>(args)...);
282  return Restartable::ManagedValue<T>(data_ptr);
283 }
Wrapper class for restartable data that is "managed.
Definition: Restartable.h:42

◆ declareRecoverableData()

template<typename T , typename... Args>
T & Restartable::declareRecoverableData ( const std::string &  data_name,
Args &&...  args 
)
protectedinherited

Declare a piece of data as "recoverable" and initialize it.

This means that in the event of a restart this piece of data will be restored back to its previous value.

Note - this data will NOT be restored on Restart!

NOTE: This returns a reference! Make sure you store it in a reference!

Parameters
data_nameThe name of the data (usually just use the same name as the member variable)
argsArguments to forward to the constructor of the data

Definition at line 351 of file Restartable.h.

352 {
353  const auto full_name = restartableName(data_name);
354 
356 
357  return declareRestartableDataWithContext<T>(data_name, nullptr, std::forward<Args>(args)...);
358 }
std::string restartableName(const std::string &data_name) const
Gets the name of a piece of restartable data given a data name, adding the system name and object nam...
Definition: Restartable.C:66
void registerRestartableNameWithFilterOnApp(const std::string &name, Moose::RESTARTABLE_FILTER filter)
Helper function for actually registering the restartable data.
Definition: Restartable.C:59

◆ declareRestartableData()

template<typename T , typename... Args>
T & Restartable::declareRestartableData ( const std::string &  data_name,
Args &&...  args 
)
protectedinherited

Declare a piece of data as "restartable" and initialize it.

This means that in the event of a restart this piece of data will be restored back to its previous value.

NOTE: This returns a reference! Make sure you store it in a reference!

Parameters
data_nameThe name of the data (usually just use the same name as the member variable)
argsArguments to forward to the constructor of the data

Definition at line 269 of file Restartable.h.

270 {
271  return declareRestartableDataWithContext<T>(data_name, nullptr, std::forward<Args>(args)...);
272 }

◆ declareRestartableDataWithContext()

template<typename T , typename... Args>
T & Restartable::declareRestartableDataWithContext ( const std::string &  data_name,
void context,
Args &&...  args 
)
protectedinherited

Declare a piece of data as "restartable" and initialize it.

This means that in the event of a restart this piece of data will be restored back to its previous value.

NOTE: This returns a reference! Make sure you store it in a reference!

Parameters
data_nameThe name of the data (usually just use the same name as the member variable)
contextContext pointer that will be passed to the load and store functions
argsArguments to forward to the constructor of the data

Definition at line 294 of file Restartable.h.

297 {
298  return declareRestartableDataHelper<T>(data_name, context, std::forward<Args>(args)...).set();
299 }

◆ declareRestartableDataWithObjectName()

template<typename T , typename... Args>
T & Restartable::declareRestartableDataWithObjectName ( const std::string &  data_name,
const std::string &  object_name,
Args &&...  args 
)
protectedinherited

Declare a piece of data as "restartable".

This means that in the event of a restart this piece of data will be restored back to its previous value.

NOTE: This returns a reference! Make sure you store it in a reference!

Parameters
data_nameThe name of the data (usually just use the same name as the member variable)
object_nameA supplied name for the object that is declaring this data.
argsArguments to forward to the constructor of the data

Definition at line 323 of file Restartable.h.

326 {
327  return declareRestartableDataWithObjectNameWithContext<T>(
328  data_name, object_name, nullptr, std::forward<Args>(args)...);
329 }

◆ declareRestartableDataWithObjectNameWithContext()

template<typename T , typename... Args>
T & Restartable::declareRestartableDataWithObjectNameWithContext ( const std::string &  data_name,
const std::string &  object_name,
void context,
Args &&...  args 
)
protectedinherited

Declare a piece of data as "restartable".

This means that in the event of a restart this piece of data will be restored back to its previous value.

NOTE: This returns a reference! Make sure you store it in a reference!

Parameters
data_nameThe name of the data (usually just use the same name as the member variable)
object_nameA supplied name for the object that is declaring this data.
contextContext pointer that will be passed to the load and store functions
argsArguments to forward to the constructor of the data

Definition at line 333 of file Restartable.h.

337 {
338  std::string old_name = _restartable_name;
339 
340  _restartable_name = object_name;
341 
342  T & value = declareRestartableDataWithContext<T>(data_name, context, std::forward<Args>(args)...);
343 
344  _restartable_name = old_name;
345 
346  return value;
347 }
std::string _restartable_name
The name of the object.
Definition: Restartable.h:243
Real value(unsigned n, unsigned alpha, unsigned beta, Real x)

◆ deleteRemoteElements()

void MooseMesh::deleteRemoteElements ( )

Delete remote elements.

Definition at line 3924 of file MooseMesh.C.

3925 {
3927  if (!_mesh)
3928  mooseError("Cannot delete remote elements because we have not yet attached a MeshBase");
3929 
3930  _mesh->allow_remote_element_removal(true);
3931 
3932  _mesh->delete_remote_elements();
3933 }
bool _allow_remote_element_removal
Whether to allow removal of remote elements.
Definition: MooseMesh.h:1828
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1433
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.

◆ detectOrthogonalDimRanges()

bool MooseMesh::detectOrthogonalDimRanges ( Real  tol = 1e-6)

This routine determines whether the Mesh is a regular orthogonal mesh (i.e.

square in 2D, cubic in 3D). If it is, then we can use a number of convenience functions when periodic boundary conditions are applied. This routine populates the _range vector which is necessary for these convenience functions.

Note: This routine can potentially identify meshes with concave faces that still "fit" in the convex hull of the corresponding regular orthogonal mesh. This case is highly unlikely in practice and if a user does this, well.... release the kicker!

Definition at line 1920 of file MooseMesh.C.

Referenced by AddPeriodicBCAction::autoTranslationBoundaries(), and prepare().

1921 {
1922  TIME_SECTION("detectOrthogonalDimRanges", 5);
1923 
1925  return true;
1926 
1927  std::vector<Real> min(3, std::numeric_limits<Real>::max());
1928  std::vector<Real> max(3, std::numeric_limits<Real>::min());
1929  unsigned int dim = getMesh().mesh_dimension();
1930 
1931  // Find the bounding box of our mesh
1932  for (const auto & node : getMesh().node_ptr_range())
1933  // Check all coordinates, we don't know if this mesh might be lying in a higher dim even if the
1934  // mesh dimension is lower.
1935  for (const auto i : make_range(Moose::dim))
1936  {
1937  if ((*node)(i) < min[i])
1938  min[i] = (*node)(i);
1939  if ((*node)(i) > max[i])
1940  max[i] = (*node)(i);
1941  }
1942 
1943  this->comm().max(max);
1944  this->comm().min(min);
1945 
1946  _extreme_nodes.resize(8); // 2^LIBMESH_DIM
1947  // Now make sure that there are actual nodes at all of the extremes
1948  std::vector<bool> extreme_matches(8, false);
1949  std::vector<unsigned int> comp_map(3);
1950  for (const auto & node : getMesh().node_ptr_range())
1951  {
1952  // See if the current node is located at one of the extremes
1953  unsigned int coord_match = 0;
1954 
1955  for (const auto i : make_range(Moose::dim))
1956  {
1957  if (std::abs((*node)(i)-min[i]) < tol)
1958  {
1959  comp_map[i] = MIN;
1960  ++coord_match;
1961  }
1962  else if (std::abs((*node)(i)-max[i]) < tol)
1963  {
1964  comp_map[i] = MAX;
1965  ++coord_match;
1966  }
1967  }
1968 
1969  if (coord_match == LIBMESH_DIM) // Found a coordinate at one of the extremes
1970  {
1971  _extreme_nodes[comp_map[X] * 4 + comp_map[Y] * 2 + comp_map[Z]] = node;
1972  extreme_matches[comp_map[X] * 4 + comp_map[Y] * 2 + comp_map[Z]] = true;
1973  }
1974  }
1975 
1976  // See if we matched all of the extremes for the mesh dimension
1977  this->comm().max(extreme_matches);
1978  if (std::count(extreme_matches.begin(), extreme_matches.end(), true) == (1 << dim))
1979  _regular_orthogonal_mesh = true;
1980 
1981  // Set the bounds
1982  _bounds.resize(LIBMESH_DIM);
1983  for (const auto i : make_range(Moose::dim))
1984  {
1985  _bounds[i].resize(2);
1986  _bounds[i][MIN] = min[i];
1987  _bounds[i][MAX] = max[i];
1988  }
1989 
1990  return _regular_orthogonal_mesh;
1991 }
std::vector< std::vector< Real > > _bounds
The bounds in each dimension of the mesh for regular orthogonal meshes.
Definition: MooseMesh.h:1580
MetaPhysicL::DualNumber< V, D, asd > abs(const MetaPhysicL::DualNumber< V, D, asd > &a)
Definition: EigenADReal.h:42
std::vector< Node * > _extreme_nodes
A vector containing the nodes at the corners of a regular orthogonal mesh.
Definition: MooseMesh.h:1634
static constexpr std::size_t dim
This is the dimension of all vector and tensor datastructures used in MOOSE.
Definition: Moose.h:152
const Parallel::Communicator & comm() const
auto max(const L &left, const R &right)
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
void min(const T &r, T &o, Request &req) const
void max(const T &r, T &o, Request &req) const
IntRange< T > make_range(T beg, T end)
virtual const Node & node(const dof_id_type i) const
Various accessors (pointers/references) for Node "i".
Definition: MooseMesh.C:817
unsigned int mesh_dimension() const
auto min(const L &left, const R &right)
bool _regular_orthogonal_mesh
Boolean indicating whether this mesh was detected to be regular and orthogonal.
Definition: MooseMesh.h:1577

◆ detectPairedSidesets()

void MooseMesh::detectPairedSidesets ( )
private

This routine detects paired sidesets of a regular orthogonal mesh (.i.e.

parallel sidesets "across" from one and other). The _paired_boundary datastructure is populated with this information.

Definition at line 1994 of file MooseMesh.C.

Referenced by getPairedBoundaryMapping().

1995 {
1996  TIME_SECTION("detectPairedSidesets", 5);
1997 
1998  // Loop over level-0 elements (since boundary condition information
1999  // is only directly stored for them) and find sidesets with normals
2000  // that point in the -x, +x, -y, +y, and -z, +z direction. If there
2001  // is a unique sideset id for each direction, then the paired
2002  // sidesets consist of (-x,+x), (-y,+y), (-z,+z). If there are
2003  // multiple sideset ids for a given direction, then we can't pick a
2004  // single pair for that direction. In that case, we'll just return
2005  // as was done in the original algorithm.
2006 
2007  // Points used for direction comparison
2008  const Point minus_x(-1, 0, 0), plus_x(1, 0, 0), minus_y(0, -1, 0), plus_y(0, 1, 0),
2009  minus_z(0, 0, -1), plus_z(0, 0, 1);
2010 
2011  // we need to test all element dimensions from dim down to 1
2012  const unsigned int dim = getMesh().mesh_dimension();
2013 
2014  // boundary id sets for elements of different dimensions
2015  std::vector<std::set<BoundaryID>> minus_x_ids(dim), plus_x_ids(dim), minus_y_ids(dim),
2016  plus_y_ids(dim), minus_z_ids(dim), plus_z_ids(dim);
2017 
2018  std::vector<std::unique_ptr<FEBase>> fe_faces(dim);
2019  std::vector<std::unique_ptr<libMesh::QGauss>> qfaces(dim);
2020  for (unsigned side_dim = 0; side_dim < dim; ++side_dim)
2021  {
2022  // Face is assumed to be flat, therefore normal is assumed to be
2023  // constant over the face, therefore only compute it at 1 qp.
2024  qfaces[side_dim] = std::unique_ptr<libMesh::QGauss>(new libMesh::QGauss(side_dim, CONSTANT));
2025 
2026  // A first-order Lagrange FE for the face.
2027  fe_faces[side_dim] = FEBase::build(side_dim + 1, FEType(FIRST, libMesh::LAGRANGE));
2028  fe_faces[side_dim]->attach_quadrature_rule(qfaces[side_dim].get());
2029  }
2030 
2031  // We need this to get boundary ids for each boundary face we encounter.
2032  BoundaryInfo & boundary_info = getMesh().get_boundary_info();
2033  std::vector<boundary_id_type> face_ids;
2034 
2035  for (auto & elem : as_range(getMesh().level_elements_begin(0), getMesh().level_elements_end(0)))
2036  {
2037  // dimension of the current element and its normals
2038  unsigned int side_dim = elem->dim() - 1;
2039  const std::vector<Point> & normals = fe_faces[side_dim]->get_normals();
2040 
2041  // loop over element sides
2042  for (unsigned int s = 0; s < elem->n_sides(); s++)
2043  {
2044  // If side is on the boundary
2045  if (elem->neighbor_ptr(s) == nullptr)
2046  {
2047  std::unique_ptr<Elem> side = elem->build_side_ptr(s);
2048 
2049  fe_faces[side_dim]->reinit(elem, s);
2050 
2051  // Get the boundary ID(s) for this side. If there is more
2052  // than 1 boundary id, then we already can't determine a
2053  // unique pairing of sides in this direction, but we'll just
2054  // keep going to keep the logic simple.
2055  boundary_info.boundary_ids(elem, s, face_ids);
2056 
2057  // x-direction faces
2058  if (normals[0].absolute_fuzzy_equals(minus_x))
2059  minus_x_ids[side_dim].insert(face_ids.begin(), face_ids.end());
2060  else if (normals[0].absolute_fuzzy_equals(plus_x))
2061  plus_x_ids[side_dim].insert(face_ids.begin(), face_ids.end());
2062 
2063  // y-direction faces
2064  else if (normals[0].absolute_fuzzy_equals(minus_y))
2065  minus_y_ids[side_dim].insert(face_ids.begin(), face_ids.end());
2066  else if (normals[0].absolute_fuzzy_equals(plus_y))
2067  plus_y_ids[side_dim].insert(face_ids.begin(), face_ids.end());
2068 
2069  // z-direction faces
2070  else if (normals[0].absolute_fuzzy_equals(minus_z))
2071  minus_z_ids[side_dim].insert(face_ids.begin(), face_ids.end());
2072  else if (normals[0].absolute_fuzzy_equals(plus_z))
2073  plus_z_ids[side_dim].insert(face_ids.begin(), face_ids.end());
2074  }
2075  }
2076  }
2077 
2078  // For a distributed mesh, boundaries may be distributed as well. We therefore collect information
2079  // from everyone. If the mesh is already serial, then there is no need to do an allgather. Note
2080  // that this is just going to gather information about what the periodic bc ids are. We are not
2081  // gathering any remote elements or anything like that. It's just that the GhostPointNeighbors
2082  // ghosting functor currently relies on the fact that every process agrees on whether we have
2083  // periodic boundaries; every process that thinks there are periodic boundaries will call
2084  // MeshBase::sub_point_locator which makes a parallel_object_only() assertion (right or wrong). So
2085  // we all need to go there (or not go there)
2086  if (_use_distributed_mesh && !_mesh->is_serial())
2087  {
2088  // Pack all data together so that we send them via one communication
2089  // pair: boundary side --> boundary ids.
2090  std::vector<std::pair<boundary_id_type, boundary_id_type>> vecdata;
2091  // We check boundaries on all dimensions
2092  for (unsigned side_dim = 0; side_dim < dim; ++side_dim)
2093  {
2094  // "6" means: we have at most 6 boundaries. It is true for generated simple mesh
2095  // "detectPairedSidesets" is designed for only simple meshes
2096  for (auto bd = minus_x_ids[side_dim].begin(); bd != minus_x_ids[side_dim].end(); bd++)
2097  vecdata.emplace_back(side_dim * 6 + 0, *bd);
2098 
2099  for (auto bd = plus_x_ids[side_dim].begin(); bd != plus_x_ids[side_dim].end(); bd++)
2100  vecdata.emplace_back(side_dim * 6 + 1, *bd);
2101 
2102  for (auto bd = minus_y_ids[side_dim].begin(); bd != minus_y_ids[side_dim].end(); bd++)
2103  vecdata.emplace_back(side_dim * 6 + 2, *bd);
2104 
2105  for (auto bd = plus_y_ids[side_dim].begin(); bd != plus_y_ids[side_dim].end(); bd++)
2106  vecdata.emplace_back(side_dim * 6 + 3, *bd);
2107 
2108  for (auto bd = minus_z_ids[side_dim].begin(); bd != minus_z_ids[side_dim].end(); bd++)
2109  vecdata.emplace_back(side_dim * 6 + 4, *bd);
2110 
2111  for (auto bd = plus_z_ids[side_dim].begin(); bd != plus_z_ids[side_dim].end(); bd++)
2112  vecdata.emplace_back(side_dim * 6 + 5, *bd);
2113  }
2114 
2115  _communicator.allgather(vecdata, false);
2116 
2117  // Unpack data, and add them into minus/plus_x/y_ids
2118  for (auto pair = vecdata.begin(); pair != vecdata.end(); pair++)
2119  {
2120  // Convert data from the long vector, and add data to separated sets
2121  auto side_dim = pair->first / 6;
2122  auto side = pair->first % 6;
2123 
2124  switch (side)
2125  {
2126  case 0:
2127  minus_x_ids[side_dim].insert(pair->second);
2128  break;
2129  case 1:
2130  plus_x_ids[side_dim].insert(pair->second);
2131  break;
2132  case 2:
2133  minus_y_ids[side_dim].insert(pair->second);
2134  break;
2135  case 3:
2136  plus_y_ids[side_dim].insert(pair->second);
2137  break;
2138  case 4:
2139  minus_z_ids[side_dim].insert(pair->second);
2140  break;
2141  case 5:
2142  plus_z_ids[side_dim].insert(pair->second);
2143  break;
2144  default:
2145  mooseError("Unknown boundary side ", side);
2146  }
2147  }
2148 
2149  } // end if (_use_distributed_mesh && !_need_ghost_ghosted_boundaries)
2150 
2151  for (unsigned side_dim = 0; side_dim < dim; ++side_dim)
2152  {
2153  // If unique pairings were found, fill up the _paired_boundary data
2154  // structure with that information.
2155  if (minus_x_ids[side_dim].size() == 1 && plus_x_ids[side_dim].size() == 1)
2156  _paired_boundary.emplace_back(
2157  std::make_pair(*(minus_x_ids[side_dim].begin()), *(plus_x_ids[side_dim].begin())));
2158  else
2160  "For side dimension " + std::to_string(side_dim) +
2161  " we did not find paired boundaries (sidesets) in X due to the presence of " +
2162  std::to_string(minus_x_ids[side_dim].size()) + " -X normal and " +
2163  std::to_string(plus_x_ids[side_dim].size()) + " +X normal boundaries.");
2164 
2165  if (minus_y_ids[side_dim].size() == 1 && plus_y_ids[side_dim].size() == 1)
2166  _paired_boundary.emplace_back(
2167  std::make_pair(*(minus_y_ids[side_dim].begin()), *(plus_y_ids[side_dim].begin())));
2168  else
2170  "For side dimension " + std::to_string(side_dim) +
2171  " we did not find paired boundaries (sidesets) in Y due to the presence of " +
2172  std::to_string(minus_y_ids[side_dim].size()) + " -Y normal and " +
2173  std::to_string(plus_y_ids[side_dim].size()) + " +Y normal boundaries.");
2174 
2175  if (minus_z_ids[side_dim].size() == 1 && plus_z_ids[side_dim].size() == 1)
2176  _paired_boundary.emplace_back(
2177  std::make_pair(*(minus_z_ids[side_dim].begin()), *(plus_z_ids[side_dim].begin())));
2178  else
2180  "For side dimension " + std::to_string(side_dim) +
2181  " we did not find paired boundaries (sidesets) in Z due to the presence of " +
2182  std::to_string(minus_z_ids[side_dim].size()) + " -Z normal and " +
2183  std::to_string(plus_z_ids[side_dim].size()) + " +Z normal boundaries.");
2184  }
2185 }
std::unique_ptr< FEGenericBase< Real > > build(const unsigned int dim, const FEType &fet)
void allgather(const T &send_data, std::vector< T, A > &recv_data) const
virtual std::unique_ptr< Elem > build_side_ptr(const unsigned int i)=0
void mooseInfoRepeated(Args &&... args)
Emit an informational message with the given stringified, concatenated args.
Definition: MooseError.h:377
static constexpr std::size_t dim
This is the dimension of all vector and tensor datastructures used in MOOSE.
Definition: Moose.h:152
void boundary_ids(const Node *node, std::vector< boundary_id_type > &vec_to_fill) const
const Parallel::Communicator & _communicator
const BoundaryInfo & get_boundary_info() const
bool _use_distributed_mesh
False by default.
Definition: MooseMesh.h:1428
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
SimpleRange< IndexType > as_range(const std::pair< IndexType, IndexType > &p)
virtual unsigned int n_sides() const=0
const Elem * neighbor_ptr(unsigned int i) const
bool absolute_fuzzy_equals(const T &var1, const T2 &var2, const Real tol=TOLERANCE *TOLERANCE)
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1433
virtual unsigned short dim() const=0
unsigned int mesh_dimension() const
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094
std::vector< std::pair< BoundaryID, BoundaryID > > _paired_boundary
A vector holding the paired boundaries for a regular orthogonal mesh.
Definition: MooseMesh.h:1583

◆ determineUseDistributedMesh()

void MooseMesh::determineUseDistributedMesh ( )

Determine whether to use a distributed mesh.

Should be called during construction

Definition at line 2823 of file MooseMesh.C.

Referenced by MooseMesh(), and setParallelType().

2824 {
2825  switch (_parallel_type)
2826  {
2827  case ParallelType::DEFAULT:
2828  // The user did not specify 'parallel_type = XYZ' in the input file,
2829  // so we allow the --distributed-mesh command line arg to possibly turn
2830  // on DistributedMesh. If the command line arg is not present, we pick ReplicatedMesh.
2832  _use_distributed_mesh = true;
2833  break;
2837  _use_distributed_mesh = false;
2838  break;
2840  _use_distributed_mesh = true;
2841  break;
2842  }
2843 
2844  // If the user specifies 'nemesis = true' in the Mesh block, or they are using --use-split,
2845  // we must use DistributedMesh.
2846  if (_is_nemesis || _is_split)
2847  _use_distributed_mesh = true;
2848 }
ParallelType _parallel_type
Can be set to DISTRIBUTED, REPLICATED, or DEFAULT.
Definition: MooseMesh.h:1423
bool _is_nemesis
True if a Nemesis Mesh was read in.
Definition: MooseMesh.h:1469
bool getDistributedMeshOnCommandLine() const
Returns true if the user specified –distributed-mesh (or –parallel-mesh, for backwards compatibilit...
Definition: MooseApp.h:493
bool _use_distributed_mesh
False by default.
Definition: MooseMesh.h:1428
const bool _is_split
Whether or not we are using a (pre-)split mesh (automatically DistributedMesh)
Definition: MooseMesh.h:1586
MooseApp & _app
The MOOSE application this is associated with.
Definition: MooseBase.h:84
bool _parallel_type_overridden
Definition: MooseMesh.h:1430

◆ dimension()

unsigned int MooseMesh::dimension ( ) const
virtual

◆ dimensionWidth()

Real MooseMesh::dimensionWidth ( unsigned int  component) const

Returns the width of the requested dimension.

Definition at line 2188 of file MooseMesh.C.

Referenced by addPeriodicVariable(), AddPeriodicBCAction::autoTranslationBoundaries(), and effectiveSpatialDimension().

2189 {
2190  return getMaxInDimension(component) - getMinInDimension(component);
2191 }
virtual Real getMaxInDimension(unsigned int component) const
Definition: MooseMesh.C:2203
virtual Real getMinInDimension(unsigned int component) const
Returns the min or max of the requested dimension respectively.
Definition: MooseMesh.C:2194

◆ doingPRefinement() [1/2]

void MooseMesh::doingPRefinement ( bool  doing_p_refinement)
inline

Indicate whether the kind of adaptivity we're doing is p-refinement.

Definition at line 1347 of file MooseMesh.h.

Referenced by SubProblem::doingPRefinement(), Adaptivity::init(), FEProblemBase::init(), ProjectMaterialProperties::onBoundary(), CacheChangedListsThread::onElement(), and ProjectMaterialProperties::onElement().

1347 { _doing_p_refinement = doing_p_refinement; }
bool _doing_p_refinement
Whether we have p-refinement (as opposed to h-refinement)
Definition: MooseMesh.h:1877

◆ doingPRefinement() [2/2]

bool MooseMesh::doingPRefinement ( ) const
inline

Query whether we have p-refinement.

Definition at line 1352 of file MooseMesh.h.

Referenced by buildRefinementAndCoarseningMaps().

1352 { return _doing_p_refinement; }
bool _doing_p_refinement
Whether we have p-refinement (as opposed to h-refinement)
Definition: MooseMesh.h:1877

◆ effectiveSpatialDimension()

unsigned int MooseMesh::effectiveSpatialDimension ( ) const
virtual

Returns the effective spatial dimension determined by the coordinates actually used by the mesh.

This means that a 1D mesh that has non-zero z or y coordinates is actually a 2D or 3D mesh, respectively. Likewise a 2D mesh that has non-zero z coordinates is actually 3D mesh.

Definition at line 2929 of file MooseMesh.C.

2930 {
2931  const Real abs_zero = 1e-12;
2932 
2933  // See if the mesh is completely containd in the z and y planes to calculate effective spatial
2934  // dim
2935  for (unsigned int dim = LIBMESH_DIM; dim >= 1; --dim)
2936  if (dimensionWidth(dim - 1) >= abs_zero)
2937  return dim;
2938 
2939  // If we get here, we have a 1D mesh on the x-axis.
2940  return 1;
2941 }
static constexpr std::size_t dim
This is the dimension of all vector and tensor datastructures used in MOOSE.
Definition: Moose.h:152
DIE A HORRIBLE DEATH HERE typedef LIBMESH_DEFAULT_SCALAR_TYPE Real
Real dimensionWidth(unsigned int component) const
Returns the width of the requested dimension.
Definition: MooseMesh.C:2188

◆ elem() [1/2]

Elem * MooseMesh::elem ( const dof_id_type  i)
virtual

◆ elem() [2/2]

const Elem * MooseMesh::elem ( const dof_id_type  i) const
virtual

Definition at line 3101 of file MooseMesh.C.

3102 {
3103  mooseDeprecated("MooseMesh::elem() is deprecated, please use MooseMesh::elemPtr() instead");
3104  return elemPtr(i);
3105 }
void mooseDeprecated(Args &&... args) const
virtual Elem * elemPtr(const dof_id_type i)
Definition: MooseMesh.C:3108

◆ elemInfo()

const ElemInfo & MooseMesh::elemInfo ( const dof_id_type  id) const

Accessor for the elemInfo object for a given element ID.

Definition at line 3866 of file MooseMesh.C.

Referenced by MooseLinearVariableFV< Real >::evaluate(), and MooseLinearVariableFV< Real >::evaluateGradient().

3867 {
3868  return libmesh_map_find(_elem_to_elem_info, id);
3869 }
std::unordered_map< dof_id_type, ElemInfo > _elem_to_elem_info
Map connecting elems with their corresponding ElemInfo, we use the element ID as the key...
Definition: MooseMesh.h:1596

◆ elemInfoVector()

const std::vector<const ElemInfo *>& MooseMesh::elemInfoVector ( ) const
inline

Accessor for the element info objects owned by this process.

Definition at line 1181 of file MooseMesh.h.

1181 { return _elem_info; }
std::vector< const ElemInfo * > _elem_info
Holds only those ElemInfo objects that have processor_id equal to this process&#39;s id, e.g.
Definition: MooseMesh.h:1600

◆ elemPtr() [1/2]

Elem * MooseMesh::elemPtr ( const dof_id_type  i)
virtual

Definition at line 3108 of file MooseMesh.C.

Referenced by FEProblemBase::addGhostedElem(), SystemBase::augmentSendList(), NodalPatchRecoveryAuxBase::blockRestrictElements(), NodalPatchRecovery::compute(), BoundaryMarker::computeElementMarker(), ProjectionAux::computeValue(), NodalPatchRecoveryAuxBase::computeValue(), elem(), ProjectionAux::elemOnNodeVariableIsDefinedOn(), ActivateElementsUserObjectBase::execute(), NonlinearSystemBase::findImplicitGeometricCouplingEntries(), NearestNodeLocator::findNodes(), ElementSubdomainModifierBase::findReinitializedElemsAndNodes(), ElementSubdomainModifierBase::gatherMovingBoundaryChanges(), NodeElemConstraint::getConnectedDofIndices(), NodeFaceConstraint::getConnectedDofIndices(), FEProblemBase::getDiracElements(), PenetrationThread::getInfoForFacesWithCommonNodes(), ActivateElementsUserObjectBase::getNewlyActivatedElementRange(), ActivateElementsUserObjectBase::getNewlyActivatedNodeRange(), DiracKernelBase::hasPointsOnElem(), ActivateElementsUserObjectBase::isNewlyActivated(), Moose::Mortar::loopOverMortarSegments(), ElementSubdomainModifierBase::nodeIsNewlyReinitialized(), SecondaryNeighborhoodThread::operator()(), PenetrationThread::operator()(), FEProblemBase::prepareFace(), FEProblemBase::reinitDirac(), FEProblemBase::reinitElem(), FEProblemBase::reinitElemFaceRef(), FEProblemBase::reinitElemNeighborAndLowerD(), ElementSubdomainModifierBase::reinitializedElemRange(), FEProblemBase::reinitLowerDElem(), FEProblemBase::reinitNeighbor(), FEProblemBase::reinitNeighborFaceRef(), NonlinearSystemBase::reinitNodeFace(), FEProblemBase::setCurrentLowerDElem(), and NearestNodeLocator::updatePatch().

3109 {
3110  return getMesh().elem_ptr(i);
3111 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
virtual const Elem * elem_ptr(const dof_id_type i) const=0

◆ elemPtr() [2/2]

const Elem * MooseMesh::elemPtr ( const dof_id_type  i) const
virtual

Definition at line 3114 of file MooseMesh.C.

3115 {
3116  return getMesh().elem_ptr(i);
3117 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
virtual const Elem * elem_ptr(const dof_id_type i) const=0

◆ elemTypes()

MooseEnum MooseMesh::elemTypes ( )
static

returns MooseMesh element type options

Definition at line 3901 of file MooseMesh.C.

3902 {
3904  "EDGE EDGE2 EDGE3 EDGE4 QUAD QUAD4 QUAD8 QUAD9 TRI3 TRI6 HEX HEX8 HEX20 HEX27 TET4 TET10 "
3905  "PRISM6 PRISM15 PRISM18 PYRAMID5 PYRAMID13 PYRAMID14");
3906  return elemTypes;
3907 }
This is a "smart" enum class intended to replace many of the shortcomings in the C++ enum type It sho...
Definition: MooseEnum.h:33
static MooseEnum elemTypes()
returns MooseMesh element type options
Definition: MooseMesh.C:3901

◆ enabled()

virtual bool MooseObject::enabled ( ) const
inlinevirtualinherited

Return the enabled status of the object.

Reimplemented in EigenKernel.

Definition at line 40 of file MooseObject.h.

Referenced by EigenKernel::enabled().

40 { return _enabled; }
const bool & _enabled
Reference to the "enable" InputParameters, used by Controls for toggling on/off MooseObjects.
Definition: MooseObject.h:51

◆ errorIfDistributedMesh()

void MooseMesh::errorIfDistributedMesh ( std::string  name) const

Generate a unified error message if the underlying libMesh mesh is a DistributedMesh.

Clients of MooseMesh can use this function to throw an error if they know they don't work with DistributedMesh.

See, for example, the NodalVariableValue class.

Definition at line 3612 of file MooseMesh.C.

Referenced by BoundaryPreservedMarker::BoundaryPreservedMarker(), ElementGroupCentroidPositions::ElementGroupCentroidPositions(), ElementsAlongLine::ElementsAlongLine(), ElementsAlongPlane::ElementsAlongPlane(), FunctorPositions::initialize(), FunctorTimes::initialize(), IntersectionPointsAlongLine::IntersectionPointsAlongLine(), LineMaterialSamplerBase< Real >::LineMaterialSamplerBase(), MultiAppGeometricInterpolationTransfer::MultiAppGeometricInterpolationTransfer(), MultiAppUserObjectTransfer::MultiAppUserObjectTransfer(), NodeElemConstraintBase::NodeElemConstraintBase(), NonlocalIntegratedBC::NonlocalIntegratedBC(), NonlocalKernel::NonlocalKernel(), PatternedMesh::PatternedMesh(), StitchedMesh::StitchedMesh(), and TiledMesh::TiledMesh().

3613 {
3615  mooseError("Cannot use ",
3616  name,
3617  " with DistributedMesh!\n",
3618  "Consider specifying parallel_type = 'replicated' in your input file\n",
3619  "to prevent it from being run with DistributedMesh.");
3620 }
virtual const std::string & name() const
Get the name of the class.
Definition: MooseBase.h:57
bool _use_distributed_mesh
False by default.
Definition: MooseMesh.h:1428
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.

◆ errorPrefix()

std::string MooseBase::errorPrefix ( const std::string &  error_type) const
inherited
Returns
A prefix to be used in errors that contains the input file location associated with this object (if any) and the name and type of the object.

Definition at line 43 of file MooseBase.C.

Referenced by MooseBase::callMooseError(), MooseBaseErrorInterface::mooseDeprecated(), MooseBaseErrorInterface::mooseInfo(), MooseBaseErrorInterface::mooseWarning(), and MooseBaseParameterInterface::paramErrorMsg().

44 {
45  std::stringstream oss;
46  if (const auto node = _params.getHitNode())
47  if (!node->isRoot())
48  oss << node->fileLocation() << ":\n";
49  oss << "The following " << error_type << " occurred in the ";
50  if (const auto base_ptr = _params.getBase())
51  oss << *base_ptr;
52  else
53  oss << "object";
54  oss << " '" << name() << "' of type " << type() << ".\n\n";
55  return oss.str();
56 }
const hit::Node * getHitNode(const std::string &param) const
std::optional< std::string > getBase() const
virtual const std::string & name() const
Get the name of the class.
Definition: MooseBase.h:57
const InputParameters & _params
The object&#39;s parameteres.
Definition: MooseBase.h:94
const std::string & type() const
Get the type of this class.
Definition: MooseBase.h:51

◆ faceInfo() [1/2]

const std::vector< const FaceInfo * > & MooseMesh::faceInfo ( ) const
inline

Accessor for local FaceInfo objects.

Definition at line 2173 of file MooseMesh.h.

Referenced by LayeredSideDiffusiveFluxAverage::computeQpIntegral(), SideIntegralVariableUserObject::computeQpIntegral(), InterfaceUserObject::execute(), FunctorSmootherTempl< T >::FunctorSmootherTempl(), SideUserObject::getFaceInfos(), and InternalSideUserObject::getFaceInfos().

2174 {
2175  return _face_info;
2176 }
std::vector< const FaceInfo * > _face_info
Holds only those FaceInfo objects that have processor_id equal to this process&#39;s id, e.g.
Definition: MooseMesh.h:1608

◆ faceInfo() [2/2]

const FaceInfo* MooseMesh::faceInfo ( const Elem *  elem,
unsigned int  side 
) const

Accessor for the local FaceInfo object on the side of one element. Returns null if ghosted.

◆ findAdaptivityQpMaps()

void MooseMesh::findAdaptivityQpMaps ( const Elem template_elem,
libMesh::QBase qrule,
libMesh::QBase qrule_face,
std::vector< std::vector< QpMap >> &  refinement_map,
std::vector< std::pair< unsigned int, QpMap >> &  coarsen_map,
int  parent_side,
int  child,
int  child_side 
)
private

Given an elem type, get maps that tell us what qp's are closest to each other between a parent and it's children.

This is mainly used for mapping stateful material properties during adaptivity.

There are 3 cases here:

  1. Volume to volume (parent_side = -1, child = -1, child_side = -1)
  2. Parent side to child side (parent_side = 0+, child = -1, child_side = 0+)
  3. Child side to parent volume (parent_side = -1, child = 0+, child_side = 0+)

Case 3 only happens under refinement (need to invent data at internal child sides).

Parameters
template_elemAn element of the type that we need to find the maps for
qruleThe quadrature rule that we need to find the maps for
qrule_faceThe face quadrature rule that we need to find the maps for
refinement_mapThe map to use when an element gets split
coarsen_mapThe map to use when an element is coarsened.
parent_side- the id of the parent's side
child- the id of the child element
child_side- The id of the child's side

Definition at line 2616 of file MooseMesh.C.

Referenced by buildCoarseningMap(), and buildRefinementMap().

2624 {
2625  TIME_SECTION("findAdaptivityQpMaps", 5);
2626 
2628  mesh.skip_partitioning(true);
2629 
2630  unsigned int dim = template_elem->dim();
2632 
2633  for (unsigned int i = 0; i < template_elem->n_nodes(); ++i)
2634  mesh.add_point(template_elem->point(i));
2635 
2636  Elem * elem = mesh.add_elem(Elem::build(template_elem->type()).release());
2637 
2638  for (unsigned int i = 0; i < template_elem->n_nodes(); ++i)
2639  elem->set_node(i, mesh.node_ptr(i));
2640 
2641  std::unique_ptr<FEBase> fe(FEBase::build(dim, FEType()));
2642  fe->get_phi();
2643  const std::vector<Point> & q_points_volume = fe->get_xyz();
2644 
2645  std::unique_ptr<FEBase> fe_face(FEBase::build(dim, FEType()));
2646  fe_face->get_phi();
2647  const std::vector<Point> & q_points_face = fe_face->get_xyz();
2648 
2649  fe->attach_quadrature_rule(&qrule);
2650  fe_face->attach_quadrature_rule(&qrule_face);
2651 
2652  // The current q_points (locations in *physical* space)
2653  const std::vector<Point> * q_points;
2654 
2655  if (parent_side != -1)
2656  {
2657  fe_face->reinit(elem, parent_side);
2658  q_points = &q_points_face;
2659  }
2660  else
2661  {
2662  fe->reinit(elem);
2663  q_points = &q_points_volume;
2664  }
2665 
2666  std::vector<Point> parent_ref_points;
2667 
2668  libMesh::FEMap::inverse_map(elem->dim(), elem, *q_points, parent_ref_points);
2669  libMesh::MeshRefinement mesh_refinement(mesh);
2670  mesh_refinement.uniformly_refine(1);
2671 
2672  // A map from the child element index to the locations of all the child's quadrature points in
2673  // *reference* space. Note that we use a map here instead of a vector because the caller can
2674  // pass an explicit child index. We are not guaranteed to have a sequence from [0, n_children)
2675  std::map<unsigned int, std::vector<Point>> child_to_ref_points;
2676 
2677  unsigned int n_children = elem->n_children();
2678 
2679  refinement_map.resize(n_children);
2680 
2681  std::vector<unsigned int> children;
2682 
2683  if (child != -1) // Passed in a child explicitly
2684  children.push_back(child);
2685  else
2686  {
2687  children.resize(n_children);
2688  for (unsigned int child = 0; child < n_children; ++child)
2689  children[child] = child;
2690  }
2691 
2692  for (unsigned int i = 0; i < children.size(); ++i)
2693  {
2694  unsigned int child = children[i];
2695 
2696  if ((parent_side != -1 && !elem->is_child_on_side(child, parent_side)))
2697  continue;
2698 
2699  const Elem * child_elem = elem->child_ptr(child);
2700 
2701  if (child_side != -1)
2702  {
2703  fe_face->reinit(child_elem, child_side);
2704  q_points = &q_points_face;
2705  }
2706  else
2707  {
2708  fe->reinit(child_elem);
2709  q_points = &q_points_volume;
2710  }
2711 
2712  std::vector<Point> child_ref_points;
2713 
2714  libMesh::FEMap::inverse_map(elem->dim(), elem, *q_points, child_ref_points);
2715  child_to_ref_points[child] = child_ref_points;
2716 
2717  std::vector<QpMap> & qp_map = refinement_map[child];
2718 
2719  // Find the closest parent_qp to each child_qp
2720  mapPoints(child_ref_points, parent_ref_points, qp_map);
2721  }
2722 
2723  coarsen_map.resize(parent_ref_points.size());
2724 
2725  // For each parent qp find the closest child qp
2726  for (unsigned int child = 0; child < n_children; child++)
2727  {
2728  if (parent_side != -1 && !elem->is_child_on_side(child, child_side))
2729  continue;
2730 
2731  std::vector<Point> & child_ref_points = child_to_ref_points[child];
2732 
2733  std::vector<QpMap> qp_map;
2734 
2735  // Find all of the closest points from parent_qp to _THIS_ child's qp
2736  mapPoints(parent_ref_points, child_ref_points, qp_map);
2737 
2738  // Check those to see if they are closer than what we currently have for each point
2739  for (unsigned int parent_qp = 0; parent_qp < parent_ref_points.size(); ++parent_qp)
2740  {
2741  std::pair<unsigned int, QpMap> & child_and_map = coarsen_map[parent_qp];
2742  unsigned int & closest_child = child_and_map.first;
2743  QpMap & closest_map = child_and_map.second;
2744 
2745  QpMap & current_map = qp_map[parent_qp];
2746 
2747  if (current_map._distance < closest_map._distance)
2748  {
2749  closest_child = child;
2750  closest_map = current_map;
2751  }
2752  }
2753  }
2754 }
std::unique_ptr< FEGenericBase< Real > > build(const unsigned int dim, const FEType &fet)
virtual Node *& set_node(const unsigned int i)
void skip_partitioning(bool skip)
static Point inverse_map(const unsigned int dim, const Elem *elem, const Point &p, const Real tolerance=TOLERANCE, const bool secure=true, const bool extra_checks=true)
virtual bool is_child_on_side(const unsigned int c, const unsigned int s) const=0
MeshBase & mesh
Helper object for holding qp mapping info.
Definition: MooseMesh.h:69
static constexpr std::size_t dim
This is the dimension of all vector and tensor datastructures used in MOOSE.
Definition: Moose.h:152
virtual unsigned int n_children() const=0
const Parallel::Communicator & _communicator
virtual Node * add_point(const Point &p, const dof_id_type id=DofObject::invalid_id, const processor_id_type proc_id=DofObject::invalid_processor_id)=0
void mapPoints(const std::vector< Point > &from, const std::vector< Point > &to, std::vector< QpMap > &qp_map)
Find the closest points that map "from" to "to" and fill up "qp_map".
Definition: MooseMesh.C:2585
virtual unsigned int n_nodes() const=0
virtual Elem * add_elem(Elem *e)=0
void set_mesh_dimension(unsigned char d)
virtual unsigned short dim() const=0
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094
virtual const Node * node_ptr(const dof_id_type i) const=0
virtual ElemType type() const=0
const Point & point(const unsigned int i) const
Real _distance
The distance between them.
Definition: MooseMesh.h:81
const Elem * child_ptr(unsigned int i) const

◆ freeBndElems()

void MooseMesh::freeBndElems ( )
protected

Definition at line 393 of file MooseMesh.C.

Referenced by buildBndElemList(), and ~MooseMesh().

394 {
395  // free memory
396  for (auto & belem : _bnd_elems)
397  delete belem;
398 
399  for (auto & it : _bnd_elem_ids)
400  it.second.clear();
401 
402  _bnd_elem_ids.clear();
403 }
std::unordered_map< boundary_id_type, std::unordered_set< dof_id_type > > _bnd_elem_ids
Map of set of elem IDs connected to each boundary.
Definition: MooseMesh.h:1545
std::vector< BndElement * > _bnd_elems
array of boundary elems
Definition: MooseMesh.h:1540

◆ freeBndNodes()

void MooseMesh::freeBndNodes ( )
protected

Definition at line 375 of file MooseMesh.C.

Referenced by buildNodeList(), and ~MooseMesh().

376 {
377  // free memory
378  for (auto & bnode : _bnd_nodes)
379  delete bnode;
380 
381  for (auto & it : _node_set_nodes)
382  it.second.clear();
383 
384  _node_set_nodes.clear();
385 
386  for (auto & it : _bnd_node_ids)
387  it.second.clear();
388 
389  _bnd_node_ids.clear();
390 }
std::map< boundary_id_type, std::set< dof_id_type > > _bnd_node_ids
Map of sets of node IDs in each boundary.
Definition: MooseMesh.h:1537
std::map< boundary_id_type, std::vector< dof_id_type > > _node_set_nodes
list of nodes that belongs to a specified nodeset: indexing [nodeset_id] -> [array of node ids] ...
Definition: MooseMesh.h:1556
std::vector< BndNode * > _bnd_nodes
array of boundary nodes
Definition: MooseMesh.h:1533

◆ getActiveLocalElementRange()

ConstElemRange * MooseMesh::getActiveLocalElementRange ( )

Return pointers to range objects for various types of ranges (local nodes, boundary elems, etc.).

Definition at line 1235 of file MooseMesh.C.

Referenced by AuxiliarySystem::computeElementalVarsHelper(), FEProblemBase::computeIndicators(), FEProblemBase::computeMarkers(), FEProblemBase::computeUserObjectsInternal(), PointwiseRenormalizeVector::execute(), FEProblemBase::getCurrentAlgebraicElementRange(), FEProblemBase::initialSetup(), meshChanged(), DOFMapOutput::output(), MeshInfo::possiblyAddSubdomainInfo(), FEProblemBase::projectSolution(), SystemBase::setVariableGlobalDoFs(), FixedPointSolve::solve(), TransientMultiApp::solveStep(), updateActiveSemiLocalNodeRange(), Adaptivity::updateErrorVectors(), FEProblemBase::updateMaxQps(), and SystemBase::zeroVariables().

1236 {
1238  {
1239  TIME_SECTION("getActiveLocalElementRange", 5);
1240 
1241  _active_local_elem_range = std::make_unique<ConstElemRange>(
1242  getMesh().active_local_elements_begin(), getMesh().active_local_elements_end(), GRAIN_SIZE);
1243  }
1244 
1245  return _active_local_elem_range.get();
1246 }
std::unique_ptr< libMesh::ConstElemRange > _active_local_elem_range
A range for use with threading.
Definition: MooseMesh.h:1494
static const int GRAIN_SIZE
Definition: MooseMesh.C:66
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443

◆ getActiveNodeRange()

NodeRange * MooseMesh::getActiveNodeRange ( )

Definition at line 1249 of file MooseMesh.C.

Referenced by VariableCondensationPreconditioner::getDofToCondense(), and meshChanged().

1250 {
1251  if (!_active_node_range)
1252  {
1253  TIME_SECTION("getActiveNodeRange", 5);
1254 
1255  _active_node_range = std::make_unique<NodeRange>(
1256  getMesh().active_nodes_begin(), getMesh().active_nodes_end(), GRAIN_SIZE);
1257  }
1258 
1259  return _active_node_range.get();
1260 }
std::unique_ptr< libMesh::NodeRange > _active_node_range
Definition: MooseMesh.h:1497
static const int GRAIN_SIZE
Definition: MooseMesh.C:66
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443

◆ getActiveSemiLocalNodeRange()

SemiLocalNodeRange * MooseMesh::getActiveSemiLocalNodeRange ( ) const

Definition at line 1263 of file MooseMesh.C.

1264 {
1265  mooseAssert(_active_semilocal_node_range,
1266  "_active_semilocal_node_range has not been created yet!");
1267 
1268  return _active_semilocal_node_range.get();
1269 }
std::unique_ptr< SemiLocalNodeRange > _active_semilocal_node_range
Definition: MooseMesh.h:1496

◆ getAllElemIDs()

std::set< dof_id_type > MooseMesh::getAllElemIDs ( unsigned int  elem_id_index) const

Return all the unique element IDs for an extra element integer with its index.

Definition at line 1126 of file MooseMesh.C.

Referenced by getElemIDMapping().

1127 {
1128  std::set<dof_id_type> unique_ids;
1129  for (auto & pair : _block_id_mapping[elem_id_index])
1130  for (auto & id : pair.second)
1131  unique_ids.insert(id);
1132  return unique_ids;
1133 }
std::vector< std::unordered_map< SubdomainID, std::set< dof_id_type > > > _block_id_mapping
Unique element integer IDs for each subdomain and each extra element integers.
Definition: MooseMesh.h:1840

◆ getAxisymmetricRadialCoord()

unsigned int MooseMesh::getAxisymmetricRadialCoord ( ) const

Returns the desired radial direction for RZ coordinate transformation.

Returns
The coordinate direction for the radial direction

Definition at line 4263 of file MooseMesh.C.

Referenced by SubProblem::getAxisymmetricRadialCoord(), and ComputeLinearFVGreenGaussGradientVolumeThread::operator()().

4264 {
4266  mooseError("getAxisymmetricRadialCoord() should not be called if "
4267  "setGeneralAxisymmetricCoordAxes() has been called.");
4268 
4269  if (_rz_coord_axis == 0)
4270  return 1; // if the rotation axis is x (0), then the radial direction is y (1)
4271  else
4272  return 0; // otherwise the radial direction is assumed to be x, i.e., the rotation axis is y
4273 }
bool usingGeneralAxisymmetricCoordAxes() const
Returns true if general axisymmetric coordinate axes are being used.
Definition: MooseMesh.C:4248
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.
unsigned int _rz_coord_axis
Storage for RZ axis selection.
Definition: MooseMesh.h:1861

◆ getBlockConnectedBlocks()

const std::set< SubdomainID > & MooseMesh::getBlockConnectedBlocks ( const SubdomainID  subdomain_id) const

Get the list of subdomains neighboring a given subdomain.

Parameters
subdomain_idThe boundary ID you want to get the subdomain IDs for.
Returns
All subdomain IDs neighboring a given subdomain

Definition at line 3549 of file MooseMesh.C.

3550 {
3551  const auto it = _sub_to_data.find(subdomain_id);
3552 
3553  if (it == _sub_to_data.end())
3554  mooseError("Unable to find subdomain ID: ", subdomain_id, '.');
3555 
3556  return it->second.neighbor_subs;
3557 }
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.
std::unordered_map< SubdomainID, SubdomainData > _sub_to_data
Holds a map from subdomain ids to associated data.
Definition: MooseMesh.h:1800

◆ getBlocksMaxDimension()

unsigned int MooseMesh::getBlocksMaxDimension ( const std::vector< SubdomainName > &  blocks) const

Returns the maximum element dimension on the given blocks.

Definition at line 2944 of file MooseMesh.C.

Referenced by BlockRestrictable::initializeBlockRestrictable().

2945 {
2946  const auto & mesh = getMesh();
2947 
2948  // Take a shortcut if possible
2949  if (const auto & elem_dims = mesh.elem_dimensions(); mesh.is_prepared() && elem_dims.size() == 1)
2950  return *elem_dims.begin();
2951 
2952  unsigned short dim = 0;
2953  const auto subdomain_ids = getSubdomainIDs(blocks);
2954  const std::set<SubdomainID> subdomain_ids_set(subdomain_ids.begin(), subdomain_ids.end());
2955  for (const auto & elem : mesh.active_subdomain_set_elements_ptr_range(subdomain_ids_set))
2956  dim = std::max(dim, elem->dim());
2957 
2958  // Get the maximumal globally
2960  return dim;
2961 }
bool is_prepared() const
char ** blocks
MeshBase & mesh
static constexpr std::size_t dim
This is the dimension of all vector and tensor datastructures used in MOOSE.
Definition: Moose.h:152
const Parallel::Communicator & _communicator
std::vector< SubdomainID > getSubdomainIDs(const std::vector< SubdomainName > &subdomain_names) const
Get the associated subdomainIDs for the subdomain names that are passed in.
Definition: MooseMesh.C:1734
auto max(const L &left, const R &right)
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
const std::set< unsigned char > & elem_dimensions() const
void max(const T &r, T &o, Request &req) const
virtual unsigned short dim() const=0
virtual SimpleRange< element_iterator > active_subdomain_set_elements_ptr_range(std::set< subdomain_id_type > ss)=0
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094

◆ getBoundariesToActiveSemiLocalElemIds()

const std::unordered_map< boundary_id_type, std::unordered_set< dof_id_type > > & MooseMesh::getBoundariesToActiveSemiLocalElemIds ( ) const

Returns a map of boundaries to ids of elements on the boundary.

Definition at line 1322 of file MooseMesh.C.

Referenced by getBoundariesToElems().

1323 {
1324  return _bnd_elem_ids;
1325 }
std::unordered_map< boundary_id_type, std::unordered_set< dof_id_type > > _bnd_elem_ids
Map of set of elem IDs connected to each boundary.
Definition: MooseMesh.h:1545

◆ getBoundariesToElems()

const std::unordered_map< boundary_id_type, std::unordered_set< dof_id_type > > & MooseMesh::getBoundariesToElems ( ) const

Returns a map of boundaries to ids of elements on the boundary.

Definition at line 1314 of file MooseMesh.C.

1315 {
1316  mooseDeprecated("MooseMesh::getBoundariesToElems is deprecated, "
1317  "use MooseMesh::getBoundariesToActiveSemiLocalElemIds");
1319 }
void mooseDeprecated(Args &&... args) const
const std::unordered_map< boundary_id_type, std::unordered_set< dof_id_type > > & getBoundariesToActiveSemiLocalElemIds() const
Returns a map of boundaries to ids of elements on the boundary.
Definition: MooseMesh.C:1322

◆ getBoundaryActiveNeighborElemIds()

std::unordered_set< dof_id_type > MooseMesh::getBoundaryActiveNeighborElemIds ( BoundaryID  bid) const

Return all ids of neighbors of elements which have a side which is part of a sideset.

Note that boundaries are sided, this is on the neighbor side. For the sideset side, use getBoundariesActiveLocalElemIds. Note that while the element is local and active, the neighbor is not guaranteed to be local, it could be ghosted. Note that if the neighbor is not ghosted, is a remote_elem, then it will not be included

Parameters
bidthe id of the sideset of interest

Definition at line 1339 of file MooseMesh.C.

1340 {
1341  // Vector of boundary elems is updated every mesh update
1342  std::unordered_set<dof_id_type> neighbor_elems;
1343  for (const auto & bnd_elem : _bnd_elems)
1344  {
1345  const auto & [elem_ptr, elem_side, elem_bid] = *bnd_elem;
1346  if (elem_bid == bid)
1347  {
1348  const auto * neighbor = elem_ptr->neighbor_ptr(elem_side);
1349  // Dont add fully remote elements, ghosted is fine
1350  if (neighbor && neighbor != libMesh::remote_elem)
1351  {
1352  // handle mesh refinement, only return active elements near the boundary
1353  if (neighbor->active())
1354  neighbor_elems.insert(neighbor->id());
1355  else
1356  {
1357  std::vector<const Elem *> family;
1358  neighbor->active_family_tree_by_neighbor(family, elem_ptr);
1359  for (const auto & child_neighbor : family)
1360  neighbor_elems.insert(child_neighbor->id());
1361  }
1362  }
1363  }
1364  }
1365 
1366  return neighbor_elems;
1367 }
std::vector< BndElement * > _bnd_elems
array of boundary elems
Definition: MooseMesh.h:1540
const RemoteElem * remote_elem

◆ getBoundaryActiveSemiLocalElemIds()

std::unordered_set< dof_id_type > MooseMesh::getBoundaryActiveSemiLocalElemIds ( BoundaryID  bid) const

Return all ids of elements which have a side which is part of a sideset.

Note that boundaries are sided.

Parameters
bidthe id of the sideset of interest

Definition at line 1328 of file MooseMesh.C.

1329 {
1330  // The boundary to element map is computed on every mesh update
1331  const auto it = _bnd_elem_ids.find(bid);
1332  if (it == _bnd_elem_ids.end())
1333  // Boundary is not local to this domain, return an empty set
1334  return std::unordered_set<dof_id_type>{};
1335  return it->second;
1336 }
std::unordered_map< boundary_id_type, std::unordered_set< dof_id_type > > _bnd_elem_ids
Map of set of elem IDs connected to each boundary.
Definition: MooseMesh.h:1545

◆ getBoundaryConnectedBlocks()

std::set< SubdomainID > MooseMesh::getBoundaryConnectedBlocks ( const BoundaryID  bid) const

Get the list of subdomains associated with the given boundary.

Parameters
bidThe boundary ID you want to get the subdomain IDs for.
Returns
All subdomain IDs associated with given boundary ID

Definition at line 3516 of file MooseMesh.C.

Referenced by DomainUserObject::DomainUserObject(), getInterfaceConnectedBlocks(), and NodeFaceConstraint::getSecondaryConnectedBlocks().

3517 {
3518  std::set<SubdomainID> subdomain_ids;
3519  for (const auto & [sub_id, data] : _sub_to_data)
3520  if (data.boundary_ids.find(bid) != data.boundary_ids.end())
3521  subdomain_ids.insert(sub_id);
3522 
3523  return subdomain_ids;
3524 }
std::unordered_map< SubdomainID, SubdomainData > _sub_to_data
Holds a map from subdomain ids to associated data.
Definition: MooseMesh.h:1800

◆ getBoundaryConnectedSecondaryBlocks()

std::set< SubdomainID > MooseMesh::getBoundaryConnectedSecondaryBlocks ( const BoundaryID  bid) const

Get the list of subdomains associated with the given boundary of its secondary side.

Parameters
bidThe boundary ID you want to get the subdomain IDs for.
Returns
All subdomain IDs associated with given boundary ID

Definition at line 3527 of file MooseMesh.C.

Referenced by DomainUserObject::DomainUserObject().

3528 {
3529  std::set<SubdomainID> subdomain_ids;
3530  for (const auto & it : _neighbor_subdomain_boundary_ids)
3531  if (it.second.find(bid) != it.second.end())
3532  subdomain_ids.insert(it.first);
3533 
3534  return subdomain_ids;
3535 }
std::unordered_map< SubdomainID, std::set< BoundaryID > > _neighbor_subdomain_boundary_ids
Holds a map from neighbor subomdain ids to the boundary ids that are attached to it.
Definition: MooseMesh.h:1803

◆ getBoundaryElementRange()

ConstBndElemRange * MooseMesh::getBoundaryElementRange ( )

Definition at line 1300 of file MooseMesh.C.

Referenced by AuxiliarySystem::computeElementalVarsHelper(), DMMooseGetEmbedding_Private(), GeometricSearchData::generateQuadratureNodes(), FEProblemBase::initialSetup(), meshChanged(), and GeometricSearchData::updateQuadratureNodes().

1301 {
1302  if (!_bnd_elem_range)
1303  {
1304  TIME_SECTION("getBoundaryElementRange", 5);
1305 
1306  _bnd_elem_range =
1307  std::make_unique<ConstBndElemRange>(bndElemsBegin(), bndElemsEnd(), GRAIN_SIZE);
1308  }
1309 
1310  return _bnd_elem_range.get();
1311 }
virtual bnd_elem_iterator bndElemsEnd()
Definition: MooseMesh.C:1566
std::unique_ptr< libMesh::StoredRange< MooseMesh::const_bnd_elem_iterator, const BndElement * > > _bnd_elem_range
Definition: MooseMesh.h:1502
virtual bnd_elem_iterator bndElemsBegin()
Return iterators to the beginning/end of the boundary elements list.
Definition: MooseMesh.C:1558
static const int GRAIN_SIZE
Definition: MooseMesh.C:66

◆ getBoundaryID()

BoundaryID MooseMesh::getBoundaryID ( const BoundaryName &  boundary_name) const

Get the associated BoundaryID for the boundary name.

Returns
param boundary_name The name of the boundary.
the boundary id from the passed boundary name.

Definition at line 1689 of file MooseMesh.C.

Referenced by AddPeriodicBCAction::act(), TiledMesh::buildMesh(), StitchedMesh::buildMesh(), PatternedMesh::buildMesh(), DMSetUp_Moose_Pre(), GeometricSearchData::getNearestNodeLocator(), GeometricSearchData::getPenetrationLocator(), GeometricSearchData::getQuadratureNearestNodeLocator(), GeometricSearchData::getQuadraturePenetrationLocator(), LinearNodalConstraint::LinearNodalConstraint(), LowerBoundNodalKernel::LowerBoundNodalKernel(), NodalScalarKernel::NodalScalarKernel(), prepare(), EqualValueBoundaryConstraint::updateConstrainedNodes(), and UpperBoundNodalKernel::UpperBoundNodalKernel().

1690 {
1691  if (boundary_name == "ANY_BOUNDARY_ID")
1692  mooseError("Please use getBoundaryIDs() when passing \"ANY_BOUNDARY_ID\"");
1693 
1694  return MooseMeshUtils::getBoundaryID(boundary_name, getMesh());
1695 }
BoundaryID getBoundaryID(const BoundaryName &boundary_name, const MeshBase &mesh)
Gets the boundary ID associated with the given BoundaryName.
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.

◆ getBoundaryIDs() [1/3]

std::vector<BoundaryID> MooseMesh::getBoundaryIDs ( const Elem *const  elem,
const unsigned short int  side 
) const

◆ getBoundaryIDs() [2/3]

const std::set< BoundaryID > & MooseMesh::getBoundaryIDs ( ) const

Returns a const reference to a set of all user-specified boundary IDs.

On a distributed mesh this will only include boundary IDs which exist on local or ghosted elements; a copy and a call to _communicator.set_union() will be necessary to get the global ID set.

Definition at line 2972 of file MooseMesh.C.

Referenced by cacheInfo().

2973 {
2975 }
const BoundaryInfo & get_boundary_info() const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
const std::set< boundary_id_type > & get_boundary_ids() const

◆ getBoundaryIDs() [3/3]

std::vector< BoundaryID > MooseMesh::getBoundaryIDs ( const std::vector< BoundaryName > &  boundary_name,
bool  generate_unknown = false 
) const

Get the associated BoundaryID for the boundary names that are passed in.

Returns
param boundary_name The names of the boundaries.
the boundary ids from the passed boundary names.

Definition at line 1720 of file MooseMesh.C.

1722 {
1724  getMesh(), boundary_name, generate_unknown, _mesh_boundary_ids);
1725 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
std::vector< BoundaryID > getBoundaryIDs(const libMesh::MeshBase &mesh, const std::vector< BoundaryName > &boundary_name, bool generate_unknown, const std::set< BoundaryID > &mesh_boundary_ids)
Gets the boundary IDs with their names.
std::set< BoundaryID > _mesh_boundary_ids
A set of boundary IDs currently present in the mesh.
Definition: MooseMesh.h:1524

◆ getBoundaryName()

const std::string & MooseMesh::getBoundaryName ( BoundaryID  boundary_id)

Return the name of the boundary given the id.

Definition at line 1787 of file MooseMesh.C.

Referenced by addPeriodicVariable(), FEProblemBase::initialSetup(), and NonlinearThread::printBoundaryExecutionInformation().

1788 {
1789  BoundaryInfo & boundary_info = getMesh().get_boundary_info();
1790 
1791  // We need to figure out if this boundary is a sideset or nodeset
1792  if (boundary_info.get_side_boundary_ids().count(boundary_id))
1793  return boundary_info.get_sideset_name(boundary_id);
1794  else
1795  return boundary_info.get_nodeset_name(boundary_id);
1796 }
const std::set< boundary_id_type > & get_side_boundary_ids() const
const BoundaryInfo & get_boundary_info() const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
const std::string & get_nodeset_name(boundary_id_type id) const
const std::string & get_sideset_name(boundary_id_type id) const

◆ getBoundaryNodeRange()

ConstBndNodeRange * MooseMesh::getBoundaryNodeRange ( )

Definition at line 1286 of file MooseMesh.C.

Referenced by AuxiliarySystem::computeMortarNodalVars(), AuxiliarySystem::computeNodalVarsHelper(), DMMooseGetEmbedding_Private(), NearestNodeLocator::findNodes(), FEProblemBase::getCurrentAlgebraicBndNodeRange(), ActivateElementsUserObjectBase::getNewlyActivatedBndNodeRange(), FEProblemBase::initialSetup(), meshChanged(), FEProblemBase::projectSolution(), ElementSubdomainModifierBase::reinitializedBndNodeRange(), and NearestNodeLocator::updatePatch().

1287 {
1288  if (!_bnd_node_range)
1289  {
1290  TIME_SECTION("getBoundaryNodeRange", 5);
1291 
1292  _bnd_node_range =
1293  std::make_unique<ConstBndNodeRange>(bndNodesBegin(), bndNodesEnd(), GRAIN_SIZE);
1294  }
1295 
1296  return _bnd_node_range.get();
1297 }
virtual bnd_node_iterator bndNodesEnd()
Definition: MooseMesh.C:1550
virtual bnd_node_iterator bndNodesBegin()
Return iterators to the beginning/end of the boundary nodes list.
Definition: MooseMesh.C:1542
static const int GRAIN_SIZE
Definition: MooseMesh.C:66
std::unique_ptr< libMesh::StoredRange< MooseMesh::const_bnd_node_iterator, const BndNode * > > _bnd_node_range
Definition: MooseMesh.h:1500

◆ getCheckedPointerParam()

template<typename T >
T MooseBaseParameterInterface::getCheckedPointerParam ( const std::string &  name,
const std::string &  error_string = "" 
) const
inherited

Verifies that the requested parameter exists and is not NULL and returns it to the caller.

The template parameter must be a pointer or an error will be thrown.

Definition at line 286 of file MooseBaseParameterInterface.h.

288 {
289  return parameters().getCheckedPointerParam<T>(name, error_string);
290 }
std::string name(const ElemQuality q)
T getCheckedPointerParam(const std::string &name, const std::string &error_string="") const
Verifies that the requested parameter exists and is not NULL and returns it to the caller...
const InputParameters & parameters() const
Get the parameters of the object.

◆ getCoarseningMap()

const std::vector< std::pair< unsigned int, QpMap > > & MooseMesh::getCoarseningMap ( const Elem elem,
int  input_side 
)

Get the coarsening map for a given element type.

This will tell you what quadrature points to copy from and to for stateful material properties on newly created elements from Adaptivity.

Parameters
elemThe element that represents the element type you need the coarsening map for.
input_sideThe side to map

Definition at line 2574 of file MooseMesh.C.

Referenced by ProjectMaterialProperties::onBoundary(), and ProjectMaterialProperties::onElement().

2575 {
2576  std::pair<int, ElemType> the_pair(input_side, elem.type());
2577 
2578  if (_elem_type_to_coarsening_map.find(the_pair) == _elem_type_to_coarsening_map.end())
2579  mooseError("Could not find a suitable qp refinement map!");
2580 
2581  return _elem_type_to_coarsening_map[the_pair];
2582 }
std::map< std::pair< int, libMesh::ElemType >, std::vector< std::pair< unsigned int, QpMap > > > _elem_type_to_coarsening_map
Holds mappings for volume to volume and parent side to child side Map key:
Definition: MooseMesh.h:1779
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094
virtual ElemType type() const=0

◆ getConstructNodeListFromSideList()

bool MooseMesh::getConstructNodeListFromSideList ( )
inline

Return construct node list from side list boolean.

Definition at line 1409 of file MooseMesh.h.

Referenced by SidesetAroundSubdomainUpdater::SidesetAroundSubdomainUpdater().

bool _construct_node_list_from_side_list
Whether or not to allow generation of nodesets from sidesets.
Definition: MooseMesh.h:1822

◆ getCoordSystem() [1/2]

Moose::CoordinateSystemType MooseMesh::getCoordSystem ( SubdomainID  sid) const

Get the coordinate system type, e.g.

xyz, rz, or r-spherical, for the provided subdomain id sid

Definition at line 4144 of file MooseMesh.C.

Referenced by SubProblem::getCoordSystem(), and ComputeLinearFVGreenGaussGradientVolumeThread::operator()().

4145 {
4146  auto it = _coord_sys.find(sid);
4147  if (it != _coord_sys.end())
4148  return (*it).second;
4149  else
4150  mooseError("Requested subdomain ", sid, " does not exist.");
4151 }
std::map< SubdomainID, Moose::CoordinateSystemType > & _coord_sys
Type of coordinate system per subdomain.
Definition: MooseMesh.h:1858
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.

◆ getCoordSystem() [2/2]

const std::map< SubdomainID, Moose::CoordinateSystemType > & MooseMesh::getCoordSystem ( ) const

Get the map from subdomain ID to coordinate system type, e.g.

xyz, rz, or r-spherical

Definition at line 4176 of file MooseMesh.C.

Referenced by setGeneralAxisymmetricCoordAxes().

4177 {
4178  return _coord_sys;
4179 }
std::map< SubdomainID, Moose::CoordinateSystemType > & _coord_sys
Type of coordinate system per subdomain.
Definition: MooseMesh.h:1858

◆ getDataFileName()

std::string DataFileInterface::getDataFileName ( const std::string &  param) const
inherited

Deprecated method.

The data file paths are now automatically set within the InputParameters object, so using getParam<DataFileName>("param_name") is now sufficient.

Definition at line 21 of file DataFileInterface.C.

22 {
23  _parent.mooseDeprecated("getDataFileName() is deprecated. The file path is now directly set "
24  "within the InputParameters.\nUse getParam<DataFileName>(\"",
25  param,
26  "\") instead.");
27  return _parent.getParam<DataFileName>(param);
28 }
void mooseDeprecated(Args &&... args) const
const T & getParam(const std::string &name) const
Retrieve a parameter for the object.
const ParallelParamObject & _parent

◆ getDataFileNameByName()

std::string DataFileInterface::getDataFileNameByName ( const std::string &  relative_path) const
inherited

Deprecated method.

Use getDataFilePath() instead.

Definition at line 31 of file DataFileInterface.C.

32 {
33  _parent.mooseDeprecated("getDataFileNameByName() is deprecated. Use getDataFilePath(\"",
34  relative_path,
35  "\") instead.");
36  return getDataFilePath(relative_path);
37 }
std::string getDataFilePath(const std::string &relative_path) const
Returns the path of a data file for a given relative file path.
void mooseDeprecated(Args &&... args) const
const ParallelParamObject & _parent

◆ getDataFilePath()

std::string DataFileInterface::getDataFilePath ( const std::string &  relative_path) const
inherited

Returns the path of a data file for a given relative file path.

This can be used for hardcoded datafile names and will search the same locations as getDataFileName

Definition at line 40 of file DataFileInterface.C.

Referenced by DataFileInterface::getDataFileNameByName().

41 {
42  // This should only ever be used with relative paths. There is no point to
43  // use this search path with an absolute path.
44  if (std::filesystem::path(relative_path).is_absolute())
45  _parent.mooseWarning("While using getDataFilePath(\"",
46  relative_path,
47  "\"): This API should not be used for absolute paths.");
48 
49  // Throw on error so that if getPath() fails, we can throw an error
50  // with the context of _parent.mooseError()
51  const auto throw_on_error_before = Moose::_throw_on_error;
53  std::optional<std::string> error;
54 
55  // This will search the data paths for this relative path
56  Moose::DataFileUtils::Path found_path;
57  try
58  {
59  found_path = Moose::DataFileUtils::getPath(relative_path);
60  }
61  catch (std::exception & e)
62  {
63  error = e.what();
64  }
65 
66  Moose::_throw_on_error = throw_on_error_before;
67  if (error)
68  _parent.mooseError(*error);
69 
70  mooseAssert(found_path.context == Moose::DataFileUtils::Context::DATA,
71  "Should only ever obtain data");
72  mooseAssert(found_path.data_name, "Should be set");
73 
74  const std::string msg =
75  "Using data file '" + found_path.path + "' from " + *found_path.data_name + " data";
76  _parent.mooseInfo(msg);
77 
78  return found_path.path;
79 }
Context context
Context for the file (where it came from)
Definition: DataFileUtils.h:48
void mooseInfo(Args &&... args) const
void mooseWarning(Args &&... args) const
Emits a warning prefixed with object name and type.
Representation of a data file path.
Definition: DataFileUtils.h:36
Path getPath(std::string path, const std::optional< std::string > &base=std::optional< std::string >())
Get the data path for a given path, searching the registered data.
Definition: DataFileUtils.C:22
std::optional< std::string > data_name
The name of the data registry the file came from (with context == DATA)
Definition: DataFileUtils.h:50
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.
bool _throw_on_error
Variable to turn on exceptions during mooseError(), should only be used within MOOSE unit tests or wh...
Definition: Moose.C:754
const ParallelParamObject & _parent

◆ getElementIDIndex()

unsigned int MooseMesh::getElementIDIndex ( const std::string &  id_name) const
inline

Return the accessing integer for an extra element integer with its name.

Definition at line 2157 of file MooseMesh.h.

Referenced by areElemIDsIdentical().

2158 {
2159  if (!hasElementID(id_name))
2160  mooseError("Mesh does not have element ID for ", id_name);
2161  return getMesh().get_elem_integer_index(id_name);
2162 }
bool hasElementID(const std::string &id_name) const
Whether mesh has an extra element integer with a given name.
Definition: MooseMesh.h:2151
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.

◆ getElemIDMapping()

std::unordered_map< dof_id_type, std::set< dof_id_type > > MooseMesh::getElemIDMapping ( const std::string &  from_id_name,
const std::string &  to_id_name 
) const

Definition at line 1097 of file MooseMesh.C.

1098 {
1099  auto & mesh_base = getMesh();
1100 
1101  if (!mesh_base.has_elem_integer(from_id_name))
1102  mooseError("Mesh does not have the element integer name '", from_id_name, "'");
1103  if (!mesh_base.has_elem_integer(to_id_name))
1104  mooseError("Mesh does not have the element integer name '", to_id_name, "'");
1105 
1106  const auto id1 = mesh_base.get_elem_integer_index(from_id_name);
1107  const auto id2 = mesh_base.get_elem_integer_index(to_id_name);
1108 
1109  std::unordered_map<dof_id_type, std::set<dof_id_type>> id_map;
1110  for (const auto id : getAllElemIDs(id1))
1111  id_map[id] = std::set<dof_id_type>();
1112 
1113  for (const auto & elem : mesh_base.active_local_element_ptr_range())
1114  id_map[elem->get_extra_integer(id1)].insert(elem->get_extra_integer(id2));
1115 
1116  for (auto & [id, ids] : id_map)
1117  {
1118  libmesh_ignore(id); // avoid overzealous gcc 9.4 unused var warning
1119  comm().set_union(ids);
1120  }
1121 
1122  return id_map;
1123 }
const Parallel::Communicator & comm() const
void libmesh_ignore(const Args &...)
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
std::set< dof_id_type > getAllElemIDs(unsigned int elem_id_index) const
Return all the unique element IDs for an extra element integer with its index.
Definition: MooseMesh.C:1126
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094
dof_id_type get_extra_integer(const unsigned int index) const
void set_union(T &data, const unsigned int root_id) const

◆ getElemIDsOnBlocks()

std::set< dof_id_type > MooseMesh::getElemIDsOnBlocks ( unsigned int  elem_id_index,
const std::set< SubdomainID > &  blks 
) const

Return all the unique element IDs for an extra element integer with its index on a set of subdomains.

Definition at line 1136 of file MooseMesh.C.

1137 {
1138  std::set<dof_id_type> unique_ids;
1139  for (auto & blk : blks)
1140  {
1141  auto it = _block_id_mapping[elem_id_index].find(blk);
1142  if (it == _block_id_mapping[elem_id_index].end())
1143  mooseError("Block ", blk, " is not available on the mesh");
1144 
1145  for (auto & mid : it->second)
1146  unique_ids.insert(mid);
1147  }
1148  return unique_ids;
1149 }
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.
std::vector< std::unordered_map< SubdomainID, std::set< dof_id_type > > > _block_id_mapping
Unique element integer IDs for each subdomain and each extra element integers.
Definition: MooseMesh.h:1840

◆ getFileName()

virtual std::string MooseMesh::getFileName ( ) const
inlinevirtual

Returns the name of the mesh file read to produce this mesh if any or an empty string otherwise.

Reimplemented in FileMesh, and TiledMesh.

Definition at line 1071 of file MooseMesh.h.

1071 { return ""; }

◆ getGeneralAxisymmetricCoordAxis()

const std::pair< Point, RealVectorValue > & MooseMesh::getGeneralAxisymmetricCoordAxis ( SubdomainID  subdomain_id) const

Gets the general axisymmetric coordinate axis for a block.

Parameters
[in]subdomain_idSubdomain ID for which to get axisymmetric coordinate axis

Definition at line 4238 of file MooseMesh.C.

4239 {
4240  auto it = _subdomain_id_to_rz_coord_axis.find(subdomain_id);
4241  if (it != _subdomain_id_to_rz_coord_axis.end())
4242  return (*it).second;
4243  else
4244  mooseError("Requested subdomain ", subdomain_id, " does not exist.");
4245 }
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.
std::unordered_map< SubdomainID, std::pair< Point, RealVectorValue > > _subdomain_id_to_rz_coord_axis
Map of subdomain ID to general axisymmetric axis.
Definition: MooseMesh.h:1864

◆ getGhostedBoundaries()

const std::set< unsigned int > & MooseMesh::getGhostedBoundaries ( ) const

Return a writable reference to the set of ghosted boundary IDs.

Definition at line 3236 of file MooseMesh.C.

3237 {
3238  return _ghosted_boundaries;
3239 }
std::set< unsigned int > _ghosted_boundaries
Definition: MooseMesh.h:1558

◆ getGhostedBoundaryInflation()

const std::vector< Real > & MooseMesh::getGhostedBoundaryInflation ( ) const

Return a writable reference to the _ghosted_boundaries_inflation vector.

Definition at line 3242 of file MooseMesh.C.

Referenced by NearestNodeLocator::findNodes(), and NearestNodeLocator::updatePatch().

3243 {
3245 }
std::vector< Real > _ghosted_boundaries_inflation
Definition: MooseMesh.h:1559

◆ getGhostingPatchSize()

unsigned int MooseMesh::getGhostingPatchSize ( ) const
inline

Getter for the ghosting_patch_size parameter.

Definition at line 626 of file MooseMesh.h.

Referenced by NearestNodeLocator::findNodes(), and NearestNodeLocator::updatePatch().

626 { return _ghosting_patch_size; }
unsigned int _ghosting_patch_size
The number of nearest neighbors to consider for ghosting purposes when iteration patch update strateg...
Definition: MooseMesh.h:1565

◆ getHigherDSide()

unsigned int MooseMesh::getHigherDSide ( const Elem elem) const

Returns the local side ID of the interior parent aligned with the lower dimensional element.

Definition at line 1709 of file MooseMesh.C.

1710 {
1711  auto it = _lower_d_elem_to_higher_d_elem_side.find(elem);
1712 
1713  if (it != _lower_d_elem_to_higher_d_elem_side.end())
1714  return it->second;
1715  else
1716  return libMesh::invalid_uint;
1717 }
const unsigned int invalid_uint
std::unordered_map< const Elem *, unsigned short int > _lower_d_elem_to_higher_d_elem_side
Definition: MooseMesh.h:1812
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094

◆ getInflatedProcessorBoundingBox()

BoundingBox MooseMesh::getInflatedProcessorBoundingBox ( Real  inflation_multiplier = 0.01) const

Get a (slightly inflated) processor bounding box.

Parameters
inflation_multiplierThis amount will be multiplied by the length of the diagonal of the bounding box to find the amount to inflate the bounding box by in all directions.

Definition at line 3414 of file MooseMesh.C.

Referenced by PositionsFunctorValueSampler::execute(), PointVariableSamplerBase::execute(), CartesianGridDivision::initialize(), and RadialAverage::updateCommunicationLists().

3415 {
3416  // Grab a bounding box to speed things up. Note that
3417  // local_bounding_box is *not* equivalent to processor_bounding_box
3418  // with processor_id() except in serial.
3420 
3421  // Inflate the bbox just a bit to deal with roundoff
3422  // Adding 1% of the diagonal size in each direction on each end
3423  Real inflation_amount = inflation_multiplier * (bbox.max() - bbox.min()).norm();
3424  Point inflation(inflation_amount, inflation_amount, inflation_amount);
3425 
3426  bbox.first -= inflation; // min
3427  bbox.second += inflation; // max
3428 
3429  return bbox;
3430 }
libMesh::BoundingBox create_local_bounding_box(const MeshBase &mesh)
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
const Point & min() const
auto norm(const T &a) -> decltype(std::abs(a))
DIE A HORRIBLE DEATH HERE typedef LIBMESH_DEFAULT_SCALAR_TYPE Real
const Point & max() const

◆ getInterfaceConnectedBlocks()

std::set< SubdomainID > MooseMesh::getInterfaceConnectedBlocks ( const BoundaryID  bid) const

Get the list of subdomains contacting the given boundary.

Parameters
bidThe boundary ID you want to get the subdomain IDs for.
Returns
All subdomain IDs contacting given boundary ID

Definition at line 3538 of file MooseMesh.C.

3539 {
3540  std::set<SubdomainID> subdomain_ids = getBoundaryConnectedBlocks(bid);
3541  for (const auto & it : _neighbor_subdomain_boundary_ids)
3542  if (it.second.find(bid) != it.second.end())
3543  subdomain_ids.insert(it.first);
3544 
3545  return subdomain_ids;
3546 }
std::unordered_map< SubdomainID, std::set< BoundaryID > > _neighbor_subdomain_boundary_ids
Holds a map from neighbor subomdain ids to the boundary ids that are attached to it.
Definition: MooseMesh.h:1803
std::set< SubdomainID > getBoundaryConnectedBlocks(const BoundaryID bid) const
Get the list of subdomains associated with the given boundary.
Definition: MooseMesh.C:3516

◆ getLocalNodeRange()

ConstNodeRange * MooseMesh::getLocalNodeRange ( )

Definition at line 1272 of file MooseMesh.C.

Referenced by AuxiliarySystem::computeNodalVarsHelper(), FEProblemBase::computeUserObjectsInternal(), FEProblemBase::getCurrentAlgebraicNodeRange(), FEProblemBase::initialSetup(), and meshChanged().

1273 {
1274  if (!_local_node_range)
1275  {
1276  TIME_SECTION("getLocalNodeRange", 5);
1277 
1278  _local_node_range = std::make_unique<ConstNodeRange>(
1279  getMesh().local_nodes_begin(), getMesh().local_nodes_end(), GRAIN_SIZE);
1280  }
1281 
1282  return _local_node_range.get();
1283 }
static const int GRAIN_SIZE
Definition: MooseMesh.C:66
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
std::unique_ptr< libMesh::ConstNodeRange > _local_node_range
Definition: MooseMesh.h:1498

◆ getLowerDElem()

const Elem * MooseMesh::getLowerDElem ( const Elem ,
unsigned short  int 
) const

Returns a const pointer to a lower dimensional element that corresponds to a side of a higher dimensional element.

This relationship is established through an internal_parent; if there is no lowerDElem, nullptr is returned.

Definition at line 1698 of file MooseMesh.C.

Referenced by GhostLowerDElems::operator()(), DisplacedProblem::reinitElemNeighborAndLowerD(), and FEProblemBase::reinitElemNeighborAndLowerD().

1699 {
1700  auto it = _higher_d_elem_side_to_lower_d_elem.find(std::make_pair(elem, side));
1701 
1702  if (it != _higher_d_elem_side_to_lower_d_elem.end())
1703  return it->second;
1704  else
1705  return nullptr;
1706 }
std::unordered_map< std::pair< const Elem *, unsigned short int >, const Elem * > _higher_d_elem_side_to_lower_d_elem
Holds a map from a high-order element side to its corresponding lower-d element.
Definition: MooseMesh.h:1811
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094

◆ getLowerDElemMap()

const std::unordered_map< std::pair< const Elem *, unsigned short int >, const Elem * > & MooseMesh::getLowerDElemMap ( ) const
inline

This function attempts to return the map from a high-order element side to its corresponding lower-d element.

Definition at line 2191 of file MooseMesh.h.

2192 {
2194 }
std::unordered_map< std::pair< const Elem *, unsigned short int >, const Elem * > _higher_d_elem_side_to_lower_d_elem
Holds a map from a high-order element side to its corresponding lower-d element.
Definition: MooseMesh.h:1811

◆ getMaxInDimension()

Real MooseMesh::getMaxInDimension ( unsigned int  component) const
virtual

Reimplemented in AnnularMesh, and GeneratedMesh.

Definition at line 2203 of file MooseMesh.C.

Referenced by dimensionWidth(), GeneratedMesh::getMaxInDimension(), AnnularMesh::getMaxInDimension(), and PropertyReadFile::PropertyReadFile().

2204 {
2205  mooseAssert(_mesh, "The MeshBase has not been constructed");
2206  mooseAssert(component < _bounds.size(), "Requested dimension out of bounds");
2207 
2208  return _bounds[component][MAX];
2209 }
std::vector< std::vector< Real > > _bounds
The bounds in each dimension of the mesh for regular orthogonal meshes.
Definition: MooseMesh.h:1580
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1433

◆ getMaxLeafSize()

unsigned int MooseMesh::getMaxLeafSize ( ) const
inline

Getter for the maximum leaf size parameter.

Definition at line 631 of file MooseMesh.h.

Referenced by NearestNodeLocator::findNodes(), and NearestNodeLocator::updatePatch().

631 { return _max_leaf_size; }
unsigned int _max_leaf_size
Definition: MooseMesh.h:1568

◆ getMesh() [1/4]

MeshBase & MooseMesh::getMesh ( )

Accessor for the underlying libMesh Mesh object.

Definition at line 3443 of file MooseMesh.C.

Referenced by CopyMeshPartitioner::_do_partition(), AddPeriodicBCAction::act(), activeLocalElementsBegin(), activeLocalElementsEnd(), Adaptivity::adaptMesh(), FEProblemBase::addAnyRedistributers(), addQuadratureNode(), addUniqueNode(), MultiAppConservativeTransfer::adjustTransferredSolution(), MultiAppConservativeTransfer::adjustTransferredSolutionNearestPoint(), NonlinearSystemBase::assembleScalingVector(), Assembly::Assembly(), AuxKernelTempl< Real >::AuxKernelTempl(), buildActiveSideList(), buildBndElemList(), MFEMMesh::buildDummyMooseMesh(), buildElemIDInfo(), buildFiniteVolumeInfo(), buildHRefinementAndCoarseningMaps(), buildLowerDMesh(), TiledMesh::buildMesh(), FileMesh::buildMesh(), AnnularMesh::buildMesh(), ConcentricCircleMesh::buildMesh(), RinglebMesh::buildMesh(), SpiralAnnularMesh::buildMesh(), GeneratedMesh::buildMesh(), StitchedMesh::buildMesh(), PatternedMesh::buildMesh(), ImageMesh::buildMesh2D(), ImageMesh::buildMesh3D(), buildNodeList(), buildNodeListFromSideList(), buildPeriodicNodeMap(), buildPeriodicNodeSets(), buildPRefinementAndCoarseningMaps(), buildSideList(), cacheChangedLists(), MultiAppVariableValueSamplePostprocessorTransfer::cacheElemToPostprocessorData(), cacheInfo(), changeBoundaryId(), checkCoordinateSystems(), NonlinearSystemBase::constraintJacobians(), NonlinearSystemBase::constraintResiduals(), MortarData::createMortarInterface(), detectOrthogonalDimRanges(), detectPairedSidesets(), dimension(), ExtraElementIntegerDivision::divisionIndex(), FunctorBinnedValuesDivision::divisionIndex(), SubdomainsDivision::divisionIndex(), DumpObjectsProblem::dumpVariableHelper(), ElementalVariableValue::ElementalVariableValue(), ElementGroupCentroidPositions::ElementGroupCentroidPositions(), ElementMaterialSampler::ElementMaterialSampler(), elemPtr(), ElemSideNeighborLayersTester::execute(), NodalNormalsCorner::execute(), MultiAppVariableValueSamplePostprocessorTransfer::execute(), MultiAppUserObjectTransfer::execute(), NodalNormalsPreprocessor::execute(), ExtraElementIntegerDivision::ExtraElementIntegerDivision(), ExtraIDIntegralVectorPostprocessor::ExtraIDIntegralVectorPostprocessor(), QuadraturePointMultiApp::fillPositions(), CentroidMultiApp::fillPositions(), MultiAppGeometricInterpolationTransfer::fillSourceInterpolationPoints(), SidesetAroundSubdomainUpdater::finalize(), ActivateElementsUserObjectBase::finalize(), ElementSubdomainModifierBase::gatherMovingBoundaryChanges(), ElementSubdomainModifierBase::gatherMovingBoundaryChangesHelper(), getActiveLocalElementRange(), getActiveNodeRange(), getBlocksMaxDimension(), getBoundaryID(), getBoundaryIDs(), getBoundaryName(), getElementIDIndex(), getElemIDMapping(), FEProblemBase::getEvaluableElementRange(), getInflatedProcessorBoundingBox(), getLocalNodeRange(), SubProblem::getMaterialPropertyBlockNames(), SubProblem::getMaterialPropertyBoundaryNames(), getNodeList(), FEProblemBase::getNonlinearEvaluableElementRange(), getPointLocator(), getSubdomainID(), getSubdomainIDs(), getSubdomainName(), ghostGhostedBoundaries(), Exodus::handleExodusIOMeshRenumbering(), hasElementID(), init(), DisplacedProblem::UpdateDisplacedMeshThread::init(), VerifyElementUniqueID::initialize(), VerifyNodalUniqueID::initialize(), ExtraElementIntegerDivision::initialize(), ElementCentroidPositions::initialize(), ElementGroupCentroidPositions::initialize(), FunctorPositions::initialize(), FunctorTimes::initialize(), QuadraturePointsPositions::initialize(), FunctorExtremaPositions::initialize(), ParsedDownSelectionPositions::initialize(), MultiAppDofCopyTransfer::initialSetup(), NodalVariableValue::initialSetup(), FEProblemBase::initialSetup(), SampledOutput::initSample(), MultiAppGeometricInterpolationTransfer::interpolateTargetPoints(), LinearNodalConstraint::LinearNodalConstraint(), localNodesBegin(), localNodesEnd(), Moose::Mortar::loopOverMortarSegments(), maxElemId(), maxNodeId(), GhostingUserObject::meshChanged(), RadialAverage::meshChanged(), DisplacedProblem::meshChanged(), FEProblemBase::meshChanged(), MooseMesh(), nElem(), nNodes(), NodalPatchRecovery::NodalPatchRecovery(), NodalVariableValue::NodalVariableValue(), nodeToActiveSemilocalElemMap(), nodeToElemMap(), ComputeNodalUserObjectsThread::onNode(), ProxyRelationshipManager::operator()(), MortarUserObjectThread::operator()(), ComputeMortarFunctor::operator()(), XDA::output(), Exodus::outputEmptyTimestep(), Exodus::outputNodalVariables(), prepare(), BoundaryPreservedMarker::preserveBoundary(), printInfo(), queryElemPtr(), queryNodePtr(), FileMesh::read(), PropertyReadFile::readData(), RedistributeProperties::redistribute(), SubProblem::restrictionBoundaryCheckName(), SubProblem::restrictionSubdomainCheckName(), setBoundaryName(), NonlinearSystemBase::setConstraintSecondaryValues(), XFEMInterface::setDisplacedMesh(), ActivateElementsUserObjectBase::setNewBoundayName(), setPartitionerHelper(), setSubdomainName(), SidesetAroundSubdomainUpdater::SidesetAroundSubdomainUpdater(), sideWithBoundaryID(), MoveNodesToGeometryModifierBase::snapNodes(), MultiAppDofCopyTransfer::transfer(), DisplacedProblem::undisplaceMesh(), update(), updateActiveSemiLocalNodeRange(), EqualValueBoundaryConstraint::updateConstrainedNodes(), Adaptivity::updateErrorVectors(), RandomData::updateGenerators(), DisplacedProblem::updateMesh(), SampledOutput::updateSample(), and VariableCondensationPreconditioner::VariableCondensationPreconditioner().

3444 {
3445  mooseAssert(_mesh, "Mesh hasn't been created");
3446  return *_mesh;
3447 }
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1433

◆ getMesh() [2/4]

MeshBase& MooseMesh::getMesh ( const std::string &  name)

◆ getMesh() [3/4]

const MeshBase & MooseMesh::getMesh ( ) const

Definition at line 3450 of file MooseMesh.C.

3451 {
3452  mooseAssert(_mesh, "Mesh hasn't been created");
3453  return *_mesh;
3454 }
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1433

◆ getMesh() [4/4]

const MeshBase& MooseMesh::getMesh ( const std::string &  name) const

◆ getMeshPtr()

const MeshBase * MooseMesh::getMeshPtr ( ) const

Definition at line 3437 of file MooseMesh.C.

Referenced by buildTypedMesh(), RelationshipManager::init(), and GhostBoundary::operator()().

3438 {
3439  return _mesh.get();
3440 }
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1433

◆ getMinInDimension()

Real MooseMesh::getMinInDimension ( unsigned int  component) const
virtual

Returns the min or max of the requested dimension respectively.

Reimplemented in AnnularMesh, and GeneratedMesh.

Definition at line 2194 of file MooseMesh.C.

Referenced by dimensionWidth(), GeneratedMesh::getMinInDimension(), AnnularMesh::getMinInDimension(), and PropertyReadFile::PropertyReadFile().

2195 {
2196  mooseAssert(_mesh, "The MeshBase has not been constructed");
2197  mooseAssert(component < _bounds.size(), "Requested dimension out of bounds");
2198 
2199  return _bounds[component][MIN];
2200 }
std::vector< std::vector< Real > > _bounds
The bounds in each dimension of the mesh for regular orthogonal meshes.
Definition: MooseMesh.h:1580
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1433

◆ getMooseApp()

MooseApp& MooseBase::getMooseApp ( ) const
inlineinherited

◆ getNodeBlockIds()

const std::set< SubdomainID > & MooseMesh::getNodeBlockIds ( const Node node) const

Return list of blocks to which the given node belongs.

Definition at line 1496 of file MooseMesh.C.

Referenced by ComputeNodalUserObjectsThread::onNode(), ComputeNodalKernelsThread::onNode(), ComputeNodalKernelJacobiansThread::onNode(), ComputeInitialConditionThread::operator()(), and MoveNodesToGeometryModifierBase::snapNodes().

1497 {
1498  auto it = _block_node_list.find(node.id());
1499 
1500  if (it == _block_node_list.end())
1501  mooseError("Unable to find node: ", node.id(), " in any block list.");
1502 
1503  return it->second;
1504 }
std::map< dof_id_type, std::set< SubdomainID > > _block_node_list
list of nodes that belongs to a specified block (domain)
Definition: MooseMesh.h:1553
dof_id_type id() const
virtual const Node & node(const dof_id_type i) const
Various accessors (pointers/references) for Node "i".
Definition: MooseMesh.C:817
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.

◆ getNodeList()

const std::vector< dof_id_type > & MooseMesh::getNodeList ( boundary_id_type  nodeset_id) const

Return a writable reference to a vector of node IDs that belong to nodeset_id.

Definition at line 3465 of file MooseMesh.C.

Referenced by LinearNodalConstraint::LinearNodalConstraint(), NodalScalarKernel::NodalScalarKernel(), MoveNodesToGeometryModifierBase::snapNodes(), and EqualValueBoundaryConstraint::updateConstrainedNodes().

3466 {
3467  std::map<boundary_id_type, std::vector<dof_id_type>>::const_iterator it =
3468  _node_set_nodes.find(nodeset_id);
3469 
3470  if (it == _node_set_nodes.end())
3471  {
3472  // On a distributed mesh we might not know about a remote nodeset,
3473  // so we'll return an empty vector and hope the nodeset exists
3474  // elsewhere.
3475  if (!getMesh().is_serial())
3476  {
3477  static const std::vector<dof_id_type> empty_vec;
3478  return empty_vec;
3479  }
3480  // On a replicated mesh we should know about every nodeset and if
3481  // we're asked for one that doesn't exist then it must be a bug.
3482  else
3483  {
3484  mooseError("Unable to nodeset ID: ", nodeset_id, '.');
3485  }
3486  }
3487 
3488  return it->second;
3489 }
std::map< boundary_id_type, std::vector< dof_id_type > > _node_set_nodes
list of nodes that belongs to a specified nodeset: indexing [nodeset_id] -> [array of node ids] ...
Definition: MooseMesh.h:1556
virtual bool is_serial() const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.

◆ getNormalByBoundaryID()

const RealVectorValue & MooseMesh::getNormalByBoundaryID ( BoundaryID  id) const

Returns the normal vector associated with a given BoundaryID.

It's only valid to call this when AddAllSideSetsByNormals is active.

Definition at line 2807 of file MooseMesh.C.

2808 {
2809  mooseAssert(_boundary_to_normal_map.get() != nullptr, "Boundary To Normal Map not built!");
2810 
2811  // Note: Boundaries that are not in the map (existing boundaries) will default
2812  // construct a new RealVectorValue - (x,y,z)=(0, 0, 0)
2813  return (*_boundary_to_normal_map)[id];
2814 }
std::unique_ptr< std::map< BoundaryID, RealVectorValue > > _boundary_to_normal_map
The boundary to normal map - valid only when AddAllSideSetsByNormals is active.
Definition: MooseMesh.h:1530

◆ getPairedBoundaryMapping()

const std::pair< BoundaryID, BoundaryID > * MooseMesh::getPairedBoundaryMapping ( unsigned int  component)

This function attempts to return the paired boundary ids for the given component.

For example, in a generated 2D mesh, passing 0 for the "x" component will return (3, 1).

Parameters
component- An integer representing the desired component (dimension)
Returns
std::pair pointer - The matching boundary pairs for the passed component

Definition at line 2288 of file MooseMesh.C.

Referenced by addPeriodicVariable(), and AddPeriodicBCAction::autoTranslationBoundaries().

2289 {
2291  mooseError("Trying to retrieve automatic paired mapping for a mesh that is not regular and "
2292  "orthogonal");
2293 
2294  mooseAssert(component < dimension(), "Requested dimension out of bounds");
2295 
2296  if (_paired_boundary.empty())
2298 
2299  if (component < _paired_boundary.size())
2300  return &_paired_boundary[component];
2301  else
2302  return nullptr;
2303 }
void detectPairedSidesets()
This routine detects paired sidesets of a regular orthogonal mesh (.i.e.
Definition: MooseMesh.C:1994
virtual unsigned int dimension() const
Returns MeshBase::mesh_dimension(), (not MeshBase::spatial_dimension()!) of the underlying libMesh me...
Definition: MooseMesh.C:2923
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.
std::vector< std::pair< BoundaryID, BoundaryID > > _paired_boundary
A vector holding the paired boundaries for a regular orthogonal mesh.
Definition: MooseMesh.h:1583
bool _regular_orthogonal_mesh
Boolean indicating whether this mesh was detected to be regular and orthogonal.
Definition: MooseMesh.h:1577

◆ getParallelType()

ParallelType MooseMesh::getParallelType ( ) const
inline
Returns
The parallel type

Definition at line 1016 of file MooseMesh.h.

Referenced by MultiAppDofCopyTransfer::initialSetup().

1016 { return _parallel_type; }
ParallelType _parallel_type
Can be set to DISTRIBUTED, REPLICATED, or DEFAULT.
Definition: MooseMesh.h:1423

◆ getParam() [1/2]

template<typename T >
const T & MooseBaseParameterInterface::getParam ( const std::string &  name) const
inherited

Retrieve a parameter for the object.

Parameters
nameThe name of the parameter
Returns
The value of the parameter

Definition at line 215 of file MooseBaseParameterInterface.h.

Referenced by CreateDisplacedProblemAction::act(), AddPeriodicBCAction::act(), DiffusionPhysicsBase::addPostprocessors(), ADNodalKernel::ADNodalKernel(), ArrayParsedAux::ArrayParsedAux(), AddPeriodicBCAction::autoTranslationBoundaries(), BicubicSplineFunction::BicubicSplineFunction(), ComponentPhysicsInterface::ComponentPhysicsInterface(), FunctorAux::computeValue(), FEProblemBase::createTagSolutions(), CutMeshByLevelSetGenerator::CutMeshByLevelSetGenerator(), DebugResidualAux::DebugResidualAux(), AccumulateReporter::declareLateValues(), DerivativeParsedMaterialTempl< is_ad >::DerivativeParsedMaterialTempl(), DynamicObjectRegistrationAction::DynamicObjectRegistrationAction(), EigenKernel::EigenKernel(), FEProblemBase::FEProblemBase(), FEProblemSolve::FEProblemSolve(), FiniteDifferencePreconditioner::FiniteDifferencePreconditioner(), ParsedSubdomainGeneratorBase::functionInitialize(), FVInterfaceKernel::FVInterfaceKernel(), BoundaryLayerSubdomainGenerator::generate(), ExtraNodesetGenerator::generate(), FileMeshGenerator::generate(), BlockDeletionGenerator::generate(), BreakMeshByBlockGenerator::generate(), CoarsenBlockGenerator::generate(), GeneratedMeshGenerator::generate(), RefineBlockGenerator::generate(), RefineSidesetGenerator::generate(), MeshExtruderGenerator::generate(), GenericConstantRankTwoTensorTempl< is_ad >::GenericConstantRankTwoTensorTempl(), GenericConstantSymmetricRankTwoTensorTempl< is_ad >::GenericConstantSymmetricRankTwoTensorTempl(), MooseApp::getCheckpointDirectories(), DataFileInterface::getDataFileName(), ExecutorInterface::getExecutor(), GhostingUserObject::GhostingUserObject(), TimeSequenceStepper::init(), IterationAdaptiveDT::init(), AdvancedOutput::init(), AttribThread::initFrom(), AttribSysNum::initFrom(), AttribResidualObject::initFrom(), AttribDisplaced::initFrom(), BlockRestrictable::initializeBlockRestrictable(), BoundaryRestrictable::initializeBoundaryRestrictable(), Console::initialSetup(), IterationAdaptiveDT::limitDTToPostprocessorValue(), MooseMesh(), MooseStaticCondensationPreconditioner::MooseStaticCondensationPreconditioner(), MooseVariableBase::MooseVariableBase(), MultiSystemSolveObject::MultiSystemSolveObject(), NEML2ModelExecutor::NEML2ModelExecutor(), NestedDivision::NestedDivision(), ConsoleUtils::outputExecutionInformation(), ParsedCurveGenerator::ParsedCurveGenerator(), ParsedElementDeletionGenerator::ParsedElementDeletionGenerator(), ParsedGenerateNodeset::ParsedGenerateNodeset(), ParsedGenerateSideset::ParsedGenerateSideset(), ParsedMaterialTempl< is_ad >::ParsedMaterialTempl(), ParsedNodeTransformGenerator::ParsedNodeTransformGenerator(), ParsedODEKernel::ParsedODEKernel(), ParsedPostprocessor::ParsedPostprocessor(), PiecewiseByBlockFunctorMaterialTempl< T >::PiecewiseByBlockFunctorMaterialTempl(), PiecewiseConstantByBlockMaterialTempl< is_ad >::PiecewiseConstantByBlockMaterialTempl(), ReferenceResidualInterface::ReferenceResidualInterface(), RenameBlockGenerator::RenameBlockGenerator(), Moose::FV::setInterpolationMethod(), SetupMeshAction::setupMesh(), SingleMatrixPreconditioner::SingleMatrixPreconditioner(), TimePeriod::TimePeriod(), UniqueExtraIDMeshGenerator::UniqueExtraIDMeshGenerator(), FunctorIC::value(), VariableCondensationPreconditioner::VariableCondensationPreconditioner(), and VectorOfPostprocessors::VectorOfPostprocessors().

216 {
217  return InputParameters::getParamHelper(name, _pars, static_cast<T *>(0), &_moose_base);
218 }
const MooseBase & _moose_base
The MooseBase object that inherits this class.
const InputParameters & _pars
Parameters of this object, references the InputParameters stored in the InputParametersWarehouse.
static const T & getParamHelper(const std::string &name, const InputParameters &pars, const T *the_type, const MooseBase *moose_base=nullptr)

◆ getParam() [2/2]

template<typename T1 , typename T2 >
std::vector< std::pair< T1, T2 > > MooseBaseParameterInterface::getParam ( const std::string &  param1,
const std::string &  param2 
) const
inherited

Retrieve two parameters and provide pair of parameters for the object.

Parameters
param1The name of first parameter
param2The name of second parameter
Returns
Vector of pairs of first and second parameters

Definition at line 279 of file MooseBaseParameterInterface.h.

280 {
281  return _pars.get<T1, T2>(param1, param2);
282 }
std::vector< std::pair< R1, R2 > > get(const std::string &param1, const std::string &param2) const
Combine two vector parameters into a single vector of pairs.
const InputParameters & _pars
Parameters of this object, references the InputParameters stored in the InputParametersWarehouse.

◆ getPatchSize()

unsigned int MooseMesh::getPatchSize ( ) const

Getter for the patch_size parameter.

Definition at line 3396 of file MooseMesh.C.

Referenced by NearestNodeLocator::findNodes(), and NearestNodeLocator::updatePatch().

3397 {
3398  return _patch_size;
3399 }
unsigned int _patch_size
The number of nodes to consider in the NearestNode neighborhood.
Definition: MooseMesh.h:1562

◆ getPatchUpdateStrategy()

const Moose::PatchUpdateType & MooseMesh::getPatchUpdateStrategy ( ) const

Get the current patch update strategy.

Definition at line 3408 of file MooseMesh.C.

Referenced by FEProblemBase::possiblyRebuildGeomSearchPatches().

3409 {
3410  return _patch_update_strategy;
3411 }
Moose::PatchUpdateType _patch_update_strategy
The patch update strategy.
Definition: MooseMesh.h:1571

◆ getPCoarseningMap()

const std::vector< QpMap > & MooseMesh::getPCoarseningMap ( const Elem elem) const

Get the map describing for each volumetric quadrature point (qp) on the coarse level which qp on the previous finer level the coarse qp is closest to.

Definition at line 4359 of file MooseMesh.C.

Referenced by ProjectMaterialProperties::onElement().

4360 {
4362 }
const std::vector< QpMap > & getPCoarseningMapHelper(const Elem &elem, const std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap >> &) const
Definition: MooseMesh.C:4337
std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap > > _elem_type_to_p_coarsening_map
Definition: MooseMesh.h:1782
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094

◆ getPCoarseningMapHelper()

const std::vector< QpMap > & MooseMesh::getPCoarseningMapHelper ( const Elem elem,
const std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap >> &   
) const
private

Definition at line 4337 of file MooseMesh.C.

Referenced by getPCoarseningMap(), and getPCoarseningSideMap().

4340 {
4341  mooseAssert(elem.active() && elem.p_refinement_flag() == Elem::JUST_COARSENED,
4342  "These are the conditions that should be met for requesting a coarsening map");
4343  return libmesh_map_find(map, std::make_pair(elem.type(), elem.p_level()));
4344 }
RefinementState p_refinement_flag() const
unsigned int p_level() const
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094
bool active() const
virtual ElemType type() const=0

◆ getPCoarseningSideMap()

const std::vector< QpMap > & MooseMesh::getPCoarseningSideMap ( const Elem elem) const

Get the map describing for each side quadrature point (qp) on the coarse level which qp on the previous finer level the coarse qp is closest to.

Definition at line 4365 of file MooseMesh.C.

Referenced by ProjectMaterialProperties::onBoundary().

4366 {
4368 }
const std::vector< QpMap > & getPCoarseningMapHelper(const Elem &elem, const std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap >> &) const
Definition: MooseMesh.C:4337
std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap > > _elem_type_to_p_coarsening_side_map
Definition: MooseMesh.h:1784
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094

◆ getPointLocator()

std::unique_ptr< libMesh::PointLocatorBase > MooseMesh::getPointLocator ( ) const
virtual

Proxy function to get a (sub)PointLocator from either the underlying libMesh mesh (default), or to allow derived meshes to return a custom point locator.

Definition at line 3728 of file MooseMesh.C.

Referenced by CopyMeshPartitioner::_do_partition(), PointValue::execute(), MultiAppVariableValueSampleTransfer::execute(), ElementsAlongLine::execute(), IntersectionPointsAlongLine::execute(), MultiAppVariableValueSamplePostprocessorTransfer::execute(), FindValueOnLine::initialize(), PointSamplerBase::initialize(), PiecewiseConstantFromCSV::initialSetup(), and ReporterPointMarker::markerSetup().

3729 {
3730  return getMesh().sub_point_locator();
3731 }
std::unique_ptr< PointLocatorBase > sub_point_locator() const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443

◆ getPRefinementMap()

const std::vector< QpMap > & MooseMesh::getPRefinementMap ( const Elem elem) const

Get the map describing for each volumetric quadrature point (qp) on the refined level which qp on the previous coarser level the fine qp is closest to.

Definition at line 4347 of file MooseMesh.C.

Referenced by ProjectMaterialProperties::onElement().

4348 {
4350 }
const std::vector< QpMap > & getPRefinementMapHelper(const Elem &elem, const std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap >> &) const
Definition: MooseMesh.C:4326
std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap > > _elem_type_to_p_refinement_map
Definition: MooseMesh.h:1756
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094

◆ getPRefinementMapHelper()

const std::vector< QpMap > & MooseMesh::getPRefinementMapHelper ( const Elem elem,
const std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap >> &   
) const
private

Definition at line 4326 of file MooseMesh.C.

Referenced by getPRefinementMap(), and getPRefinementSideMap().

4329 {
4330  // We are actually seeking the map stored with the p_level - 1 key, e.g. the refinement map that
4331  // maps from the previous p_level to this element's p_level
4332  return libmesh_map_find(map,
4333  std::make_pair(elem.type(), cast_int<unsigned int>(elem.p_level() - 1)));
4334 }
unsigned int p_level() const
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094
virtual ElemType type() const=0

◆ getPRefinementSideMap()

const std::vector< QpMap > & MooseMesh::getPRefinementSideMap ( const Elem elem) const

Get the map describing for each side quadrature point (qp) on the refined level which qp on the previous coarser level the fine qp is closest to.

Definition at line 4353 of file MooseMesh.C.

Referenced by ProjectMaterialProperties::onBoundary().

4354 {
4356 }
const std::vector< QpMap > & getPRefinementMapHelper(const Elem &elem, const std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap >> &) const
Definition: MooseMesh.C:4326
std::map< std::pair< libMesh::ElemType, unsigned int >, std::vector< QpMap > > _elem_type_to_p_refinement_side_map
Definition: MooseMesh.h:1758
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094

◆ getQuadratureNode()

Node * MooseMesh::getQuadratureNode ( const Elem elem,
const unsigned short int  side,
const unsigned int  qp 
)

Get a specified quadrature node.

Parameters
elemThe element the quadrature point is on
sideThe side the quadrature point is on
qpThe quadrature point number associated with the point

Definition at line 1659 of file MooseMesh.C.

Referenced by GapValueAux::computeValue(), NearestNodeDistanceAux::computeValue(), PenetrationAux::computeValue(), and GeometricSearchData::updateQuadratureNodes().

1662 {
1663  mooseAssert(_elem_to_side_to_qp_to_quadrature_nodes.find(elem->id()) !=
1665  "Elem has no quadrature nodes!");
1666  mooseAssert(_elem_to_side_to_qp_to_quadrature_nodes[elem->id()].find(side) !=
1668  "Side has no quadrature nodes!");
1669  mooseAssert(_elem_to_side_to_qp_to_quadrature_nodes[elem->id()][side].find(qp) !=
1671  "qp not found on side!");
1672 
1673  return _elem_to_side_to_qp_to_quadrature_nodes[elem->id()][side][qp];
1674 }
dof_id_type id() const
std::map< dof_id_type, std::map< unsigned int, std::map< dof_id_type, Node * > > > _elem_to_side_to_qp_to_quadrature_nodes
Definition: MooseMesh.h:1549
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094

◆ getRefinementMap()

const std::vector< std::vector< QpMap > > & MooseMesh::getRefinementMap ( const Elem elem,
int  parent_side,
int  child,
int  child_side 
)

Get the refinement map for a given element type.

This will tell you what quadrature points to copy from and to for stateful material properties on newly created elements from Adaptivity.

Parameters
elemThe element that represents the element type you need the refinement map for.
parent_sideThe side of the parent to map (-1 if not mapping parent sides)
childThe child number (-1 if not mapping child internal sides)
child_sideThe side number of the child (-1 if not mapping sides)

TODO: When running with parallel mesh + stateful adaptivty we will need to make sure that each processor has a complete map. This may require parallel communication. This is likely to happen when running on a mixed element mesh.

Definition at line 2510 of file MooseMesh.C.

Referenced by ProjectMaterialProperties::onBoundary(), ProjectMaterialProperties::onElement(), and ProjectMaterialProperties::onInternalSide().

2511 {
2512  if (child == -1) // Doing volume mapping or parent side mapping
2513  {
2514  mooseAssert(parent_side == child_side,
2515  "Parent side must match child_side if not passing a specific child!");
2516 
2517  std::pair<int, ElemType> the_pair(parent_side, elem.type());
2518 
2519  if (_elem_type_to_refinement_map.find(the_pair) == _elem_type_to_refinement_map.end())
2520  mooseError("Could not find a suitable qp refinement map!");
2521 
2522  return _elem_type_to_refinement_map[the_pair];
2523  }
2524  else // Need to map a child side to parent volume qps
2525  {
2526  std::pair<int, int> child_pair(child, child_side);
2527 
2530  _elem_type_to_child_side_refinement_map[elem.type()].find(child_pair) ==
2532  mooseError("Could not find a suitable qp refinement map!");
2533 
2534  return _elem_type_to_child_side_refinement_map[elem.type()][child_pair];
2535  }
2536 
2543 }
std::map< libMesh::ElemType, std::map< std::pair< int, int >, std::vector< std::vector< QpMap > > > > _elem_type_to_child_side_refinement_map
Holds mappings for "internal" child sides to parent volume. The second key is (child, child_side).
Definition: MooseMesh.h:1762
std::map< std::pair< int, libMesh::ElemType >, std::vector< std::vector< QpMap > > > _elem_type_to_refinement_map
Holds mappings for volume to volume and parent side to child side Map key:
Definition: MooseMesh.h:1753
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094
virtual ElemType type() const=0

◆ getRenamedParam()

template<typename T >
const T & MooseBaseParameterInterface::getRenamedParam ( const std::string &  old_name,
const std::string &  new_name 
) const
inherited

Retrieve a renamed parameter for the object.

This helper makes sure we check both names before erroring, and that only one parameter is passed to avoid silent errors

Parameters
old_namethe old name for the parameter
new_namethe new name for the parameter

Definition at line 229 of file MooseBaseParameterInterface.h.

231 {
232  // this enables having a default on the new parameter but bypassing it with the old one
233  // Most important: accept new parameter
234  if (isParamSetByUser(new_name) && !isParamValid(old_name))
235  return InputParameters::getParamHelper(new_name, _pars, static_cast<T *>(0), &_moose_base);
236  // Second most: accept old parameter
237  else if (isParamValid(old_name) && !isParamSetByUser(new_name))
238  return InputParameters::getParamHelper(old_name, _pars, static_cast<T *>(0), &_moose_base);
239  // Third most: accept default for new parameter
240  else if (isParamValid(new_name) && !isParamValid(old_name))
241  return InputParameters::getParamHelper(new_name, _pars, static_cast<T *>(0), &_moose_base);
242  // Refuse: no default, no value passed
243  else if (!isParamValid(old_name) && !isParamValid(new_name))
244  mooseError(_pars.blockFullpath() + ": parameter '" + new_name +
245  "' is being retrieved without being set.\n"
246  "Did you misspell it?");
247  // Refuse: both old and new parameters set by user
248  else
249  mooseError(_pars.blockFullpath() + ": parameter '" + new_name +
250  "' may not be provided alongside former parameter '" + old_name + "'");
251 }
const MooseBase & _moose_base
The MooseBase object that inherits this class.
void mooseError(Args &&... args)
Emit an error message with the given stringified, concatenated args and terminate the application...
Definition: MooseError.h:302
bool isParamValid(const std::string &name) const
Test if the supplied parameter is valid.
bool isParamSetByUser(const std::string &nm) const
Test if the supplied parameter is set by a user, as opposed to not set or set to default.
std::string blockFullpath() const
const InputParameters & _pars
Parameters of this object, references the InputParameters stored in the InputParametersWarehouse.
static const T & getParamHelper(const std::string &name, const InputParameters &pars, const T *the_type, const MooseBase *moose_base=nullptr)

◆ getRestartableData()

template<typename T , typename... Args>
const T & Restartable::getRestartableData ( const std::string &  data_name) const
protectedinherited

Declare a piece of data as "restartable" and initialize it Similar to declareRestartableData but returns a const reference to the object.

Forwarded arguments are not allowed in this case because we assume that the object is restarted and we won't need different constructors to initialize it.

NOTE: This returns a const reference! Make sure you store it in a const reference!

Parameters
data_nameThe name of the data (usually just use the same name as the member variable)

Definition at line 287 of file Restartable.h.

288 {
289  return declareRestartableDataHelper<T>(data_name, nullptr).get();
290 }

◆ getSharedPtr() [1/2]

std::shared_ptr< MooseObject > MooseObject::getSharedPtr ( )
inherited

Get another shared pointer to this object that has the same ownership group.

Wrapper around shared_from_this().

Definition at line 68 of file MooseObject.C.

Referenced by MFEMProblem::addBoundaryCondition(), MFEMProblem::addKernel(), and MFEMProblem::addMFEMSolver().

69 {
70  try
71  {
72  return shared_from_this();
73  }
74  catch (std::bad_weak_ptr &)
75  {
76  mooseError(not_shared_error);
77  }
78 }
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.

◆ getSharedPtr() [2/2]

std::shared_ptr< const MooseObject > MooseObject::getSharedPtr ( ) const
inherited

Definition at line 81 of file MooseObject.C.

82 {
83  try
84  {
85  return shared_from_this();
86  }
87  catch (std::bad_weak_ptr &)
88  {
89  mooseError(not_shared_error);
90  }
91 }
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.

◆ getSubdomainBoundaryIds()

const std::set< BoundaryID > & MooseMesh::getSubdomainBoundaryIds ( const SubdomainID  subdomain_id) const

Get the list of boundary ids associated with the given subdomain id.

Parameters
subdomain_idThe subdomain ID you want to get the boundary ids for.
Returns
All boundary IDs connected to elements in the give

Definition at line 3492 of file MooseMesh.C.

Referenced by getSubdomainInterfaceBoundaryIds(), and FEProblemBase::prepareMaterials().

3493 {
3494  const auto it = _sub_to_data.find(subdomain_id);
3495 
3496  if (it == _sub_to_data.end())
3497  mooseError("Unable to find subdomain ID: ", subdomain_id, '.');
3498 
3499  return it->second.boundary_ids;
3500 }
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.
std::unordered_map< SubdomainID, SubdomainData > _sub_to_data
Holds a map from subdomain ids to associated data.
Definition: MooseMesh.h:1800

◆ getSubdomainID()

SubdomainID MooseMesh::getSubdomainID ( const SubdomainName &  subdomain_name) const

Get the associated subdomain ID for the subdomain name.

Parameters
subdomain_nameThe name of the subdomain
Returns
The subdomain id from the passed subdomain name.

Definition at line 1728 of file MooseMesh.C.

Referenced by SystemBase::addVariable(), FEProblemBase::checkProblemIntegrity(), FVInterfaceKernel::FVInterfaceKernel(), TimedSubdomainModifier::getSubdomainIDAndCheck(), SolutionIC::initialSetup(), ElementSubdomainModifierBase::initialSetup(), PiecewiseByBlockFunctorMaterialTempl< T >::PiecewiseByBlockFunctorMaterialTempl(), PiecewiseConstantByBlockMaterialTempl< is_ad >::PiecewiseConstantByBlockMaterialTempl(), prepare(), setCoordSystem(), and setGeneralAxisymmetricCoordAxes().

1729 {
1730  return MooseMeshUtils::getSubdomainID(subdomain_name, getMesh());
1731 }
SubdomainID getSubdomainID(const SubdomainName &subdomain_name, const MeshBase &mesh)
Gets the subdomain ID associated with the given SubdomainName.
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443

◆ getSubdomainIDs() [1/2]

std::vector< SubdomainID > MooseMesh::getSubdomainIDs ( const std::vector< SubdomainName > &  subdomain_names) const

Get the associated subdomainIDs for the subdomain names that are passed in.

Parameters
subdomain_namesThe names of the subdomains
Returns
The subdomain ids from the passed subdomain names.

Definition at line 1734 of file MooseMesh.C.

Referenced by FEProblemBase::addAuxVariable(), FEProblemBase::addVariable(), MultiAppUserObjectTransfer::execute(), getBlocksMaxDimension(), BlockRestrictable::hasBlocks(), SubdomainsDivision::initialize(), BlockRestrictable::initializeBlockRestrictable(), ElementSubdomainModifierBase::initialSetup(), MultiAppDofCopyTransfer::initialSetup(), MultiAppGeometricInterpolationTransfer::interpolateTargetPoints(), and LayeredBase::LayeredBase().

1735 {
1736  return MooseMeshUtils::getSubdomainIDs(getMesh(), subdomain_name);
1737 }
std::vector< subdomain_id_type > getSubdomainIDs(const libMesh::MeshBase &mesh, const std::vector< SubdomainName > &subdomain_name)
Get the associated subdomainIDs for the subdomain names that are passed in.
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443

◆ getSubdomainIDs() [2/2]

std::set< SubdomainID > MooseMesh::getSubdomainIDs ( const std::set< SubdomainName > &  subdomain_names) const

Definition at line 1740 of file MooseMesh.C.

1741 {
1742  return MooseMeshUtils::getSubdomainIDs(getMesh(), subdomain_name);
1743 }
std::vector< subdomain_id_type > getSubdomainIDs(const libMesh::MeshBase &mesh, const std::vector< SubdomainName > &subdomain_name)
Get the associated subdomainIDs for the subdomain names that are passed in.
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443

◆ getSubdomainInterfaceBoundaryIds()

std::set< BoundaryID > MooseMesh::getSubdomainInterfaceBoundaryIds ( const SubdomainID  subdomain_id) const

Get the list of boundaries that contact the given subdomain.

Parameters
subdomain_idThe subdomain ID you want to get the boundary ids for.
Returns
All boundary IDs connected to elements in the given subdomain

Definition at line 3503 of file MooseMesh.C.

3504 {
3505  const auto & bnd_ids = getSubdomainBoundaryIds(subdomain_id);
3506  std::set<BoundaryID> boundary_ids(bnd_ids.begin(), bnd_ids.end());
3507  std::unordered_map<SubdomainID, std::set<BoundaryID>>::const_iterator it =
3508  _neighbor_subdomain_boundary_ids.find(subdomain_id);
3509 
3510  boundary_ids.insert(it->second.begin(), it->second.end());
3511 
3512  return boundary_ids;
3513 }
const std::set< BoundaryID > & getSubdomainBoundaryIds(const SubdomainID subdomain_id) const
Get the list of boundary ids associated with the given subdomain id.
Definition: MooseMesh.C:3492
std::unordered_map< SubdomainID, std::set< BoundaryID > > _neighbor_subdomain_boundary_ids
Holds a map from neighbor subomdain ids to the boundary ids that are attached to it.
Definition: MooseMesh.h:1803

◆ getSubdomainName()

const std::string & MooseMesh::getSubdomainName ( SubdomainID  subdomain_id) const

◆ getSubdomainNames()

std::vector< SubdomainName > MooseMesh::getSubdomainNames ( const std::vector< SubdomainID > &  subdomain_ids) const

Get the associated subdomainNames for the subdomain ids that are passed in.

Parameters
subdomain_idsThe ids of the subdomains
Returns
The subdomain names from the passed subdomain ids.

Definition at line 1764 of file MooseMesh.C.

Referenced by NonlinearSystemBase::checkKernelCoverage(), FEProblemBase::checkProblemIntegrity(), SampledOutput::cloneMesh(), BlockRestrictable::initializeBlockRestrictable(), and SolutionIC::initialSetup().

1765 {
1766  std::vector<SubdomainName> names(subdomain_ids.size());
1767 
1768  for (unsigned int i = 0; i < subdomain_ids.size(); i++)
1769  names[i] = getSubdomainName(subdomain_ids[i]);
1770 
1771  return names;
1772 }
const std::string & getSubdomainName(SubdomainID subdomain_id) const
Return the name of a block given an id.
Definition: MooseMesh.C:1758

◆ getUniqueCoordSystem()

Moose::CoordinateSystemType MooseMesh::getUniqueCoordSystem ( ) const

Get the coordinate system from the mesh, it must be the same in all subdomains otherwise this will error.

Definition at line 4154 of file MooseMesh.C.

Referenced by HDGKernel::HDGKernel().

4155 {
4156  const auto unique_system = _coord_sys.find(*meshSubdomains().begin())->second;
4157  // Check that it is actually unique
4158  bool result = std::all_of(
4159  std::next(_coord_sys.begin()),
4160  _coord_sys.end(),
4161  [unique_system](
4162  typename std::unordered_map<SubdomainID, Moose::CoordinateSystemType>::const_reference
4163  item) { return (item.second == unique_system); });
4164  if (!result)
4165  mooseError("The unique coordinate system of the mesh was requested by the mesh contains "
4166  "multiple blocks with different coordinate systems");
4167 
4169  mooseError("General axisymmetric coordinate axes are being used, and it is currently "
4170  "conservatively assumed that in this case there is no unique coordinate system.");
4171 
4172  return unique_system;
4173 }
std::map< SubdomainID, Moose::CoordinateSystemType > & _coord_sys
Type of coordinate system per subdomain.
Definition: MooseMesh.h:1858
bool usingGeneralAxisymmetricCoordAxes() const
Returns true if general axisymmetric coordinate axes are being used.
Definition: MooseMesh.C:4248
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.
const std::set< SubdomainID > & meshSubdomains() const
Returns a read-only reference to the set of subdomains currently present in the Mesh.
Definition: MooseMesh.C:3166

◆ ghostGhostedBoundaries()

void MooseMesh::ghostGhostedBoundaries ( )

Actually do the ghosting of boundaries that need to be ghosted to this processor.

Definition at line 3309 of file MooseMesh.C.

Referenced by FEProblemBase::ghostGhostedBoundaries().

3310 {
3311  // No need to do this if using a serial mesh
3312  // We do not need to ghost boundary elements when _need_ghost_ghosted_boundaries
3313  // is not true. _need_ghost_ghosted_boundaries can be set by a mesh generator
3314  // where boundaries are already ghosted accordingly
3316  return;
3317 
3318  TIME_SECTION("GhostGhostedBoundaries", 3);
3319 
3320  parallel_object_only();
3321 
3322  DistributedMesh & mesh = dynamic_cast<DistributedMesh &>(getMesh());
3323 
3324  // We clear ghosted elements that were added by previous invocations of this
3325  // method but leave ghosted elements that were added by other code, e.g.
3326  // OversampleOutput, untouched
3327  mesh.clear_extra_ghost_elems(_ghost_elems_from_ghost_boundaries);
3329 
3330  std::set<const Elem *, CompareElemsByLevel> boundary_elems_to_ghost;
3331  std::set<Node *> connected_nodes_to_ghost;
3332 
3333  std::vector<const Elem *> family_tree;
3334 
3335  for (const auto & t : mesh.get_boundary_info().build_side_list())
3336  {
3337  auto elem_id = std::get<0>(t);
3338  auto bc_id = std::get<2>(t);
3339 
3340  if (_ghosted_boundaries.find(bc_id) != _ghosted_boundaries.end())
3341  {
3342  Elem * elem = mesh.elem_ptr(elem_id);
3343 
3344 #ifdef LIBMESH_ENABLE_AMR
3345  elem->family_tree(family_tree);
3346  Elem * parent = elem->parent();
3347  while (parent)
3348  {
3349  family_tree.push_back(parent);
3350  parent = parent->parent();
3351  }
3352 #else
3353  family_tree.clear();
3354  family_tree.push_back(elem);
3355 #endif
3356  for (const auto & felem : family_tree)
3357  {
3358  boundary_elems_to_ghost.insert(felem);
3359 
3360  // The entries of connected_nodes_to_ghost need to be
3361  // non-constant, so that they will work in things like
3362  // UpdateDisplacedMeshThread. The container returned by
3363  // family_tree contains const Elems even when the Elem
3364  // it is called on is non-const, so once that interface
3365  // gets fixed we can remove this const_cast.
3366  for (unsigned int n = 0; n < felem->n_nodes(); ++n)
3367  connected_nodes_to_ghost.insert(const_cast<Node *>(felem->node_ptr(n)));
3368  }
3369  }
3370  }
3371 
3372  // We really do want to store this by value instead of by reference
3373  const auto prior_ghost_elems = mesh.extra_ghost_elems();
3374 
3376  connected_nodes_to_ghost.begin(),
3377  connected_nodes_to_ghost.end(),
3378  extra_ghost_elem_inserter<Node>(mesh));
3379 
3381  boundary_elems_to_ghost.begin(),
3382  boundary_elems_to_ghost.end(),
3383  extra_ghost_elem_inserter<Elem>(mesh));
3384 
3385  const auto & current_ghost_elems = mesh.extra_ghost_elems();
3386 
3387  std::set_difference(current_ghost_elems.begin(),
3388  current_ghost_elems.end(),
3389  prior_ghost_elems.begin(),
3390  prior_ghost_elems.end(),
3391  std::inserter(_ghost_elems_from_ghost_boundaries,
3393 }
const Elem * parent() const
bool _need_ghost_ghosted_boundaries
A parallel mesh generator such as DistributedRectilinearMeshGenerator already make everything ready...
Definition: MooseMesh.h:1837
void family_tree(std::vector< const Elem * > &family, bool reset=true) const
MeshBase & mesh
const Parallel::Communicator & comm() const
void allgather_packed_range(Context *context, Iter range_begin, const Iter range_end, OutputIter out, std::size_t approx_buffer_size=1000000) const
const BoundaryInfo & get_boundary_info() const
std::set< Elem * > _ghost_elems_from_ghost_boundaries
Set of elements ghosted by ghostGhostedBoundaries.
Definition: MooseMesh.h:1831
void build_side_list(std::vector< dof_id_type > &element_id_list, std::vector< unsigned short int > &side_list, std::vector< boundary_id_type > &bc_id_list) const
bool _use_distributed_mesh
False by default.
Definition: MooseMesh.h:1428
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
void family_tree(T elem, std::vector< T > &family, bool reset=true)
virtual const Elem * elem_ptr(const dof_id_type i) const=0
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094
std::set< unsigned int > _ghosted_boundaries
Definition: MooseMesh.h:1558

◆ hasElementID()

bool MooseMesh::hasElementID ( const std::string &  id_name) const
inline

Whether mesh has an extra element integer with a given name.

Definition at line 2151 of file MooseMesh.h.

Referenced by getElementIDIndex().

2152 {
2153  return getMesh().has_elem_integer(id_name);
2154 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443

◆ hasLowerD()

bool MooseMesh::hasLowerD ( ) const
inline
Returns
Whether there are any lower-dimensional blocks that are manifolds of higher-dimensional block faces

Definition at line 1398 of file MooseMesh.h.

Referenced by GhostLowerDElems::operator()().

1398 { return _has_lower_d; }
bool _has_lower_d
Whether there are any lower-dimensional blocks that are manifolds of higher-dimensional block faces...
Definition: MooseMesh.h:1816

◆ hasMeshBase()

bool MooseMesh::hasMeshBase ( ) const
inline

Whether mesh base object was constructed or not.

Definition at line 1104 of file MooseMesh.h.

Referenced by MeshGeneratorMesh::buildMesh().

1104 { return _mesh.get() != nullptr; }
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1433

◆ hasSecondOrderElements()

bool MooseMesh::hasSecondOrderElements ( )

check if the mesh has SECOND order elements

Definition at line 3706 of file MooseMesh.C.

Referenced by Assembly::adCurvatures(), Assembly::Assembly(), Assembly::havePRefinement(), MultiAppGeneralFieldNearestLocationTransfer::initialSetup(), and SolutionUserObjectBase::SolutionUserObjectBase().

3707 {
3708  bool mesh_has_second_order_elements = false;
3709  for (auto it = activeLocalElementsBegin(), end = activeLocalElementsEnd(); it != end; ++it)
3710  if ((*it)->default_order() == SECOND)
3711  {
3712  mesh_has_second_order_elements = true;
3713  break;
3714  }
3715 
3716  // We checked our local elements, so take the max over all processors.
3717  comm().max(mesh_has_second_order_elements);
3718  return mesh_has_second_order_elements;
3719 }
const Parallel::Communicator & comm() const
SECOND
MeshBase::element_iterator activeLocalElementsBegin()
Calls active_local_nodes_begin/end() on the underlying libMesh mesh object.
Definition: MooseMesh.C:3046
void max(const T &r, T &o, Request &req) const
const MeshBase::element_iterator activeLocalElementsEnd()
Definition: MooseMesh.C:3052

◆ init()

void MooseMesh::init ( )
virtual

Initialize the Mesh object.

Most of the time this will turn around and call build_mesh so the child class can build the Mesh object.

However, during Recovery this will read the CPA file...

If the mesh base hasn't been constructed by the time init is called, just do it here. This can happen if somebody builds a mesh outside of the normal Action system. Forcing developers to create, construct the MeshBase, and then init separately is a bit much for casual use but it gives us the ability to run MeshGenerators in-between.

Definition at line 2870 of file MooseMesh.C.

2871 {
2878  if (!_mesh)
2880 
2882  mooseError("You cannot use the mesh splitter capability with DistributedMesh!");
2883 
2884  TIME_SECTION("init", 2);
2885 
2887  {
2888  // Some partitioners are not idempotent. Some recovery data
2889  // files require partitioning to match mesh partitioning. This
2890  // means that, when recovering, we can't safely repartition.
2891  const bool skip_partitioning_later = getMesh().skip_partitioning();
2892  getMesh().skip_partitioning(true);
2893  const bool allow_renumbering_later = getMesh().allow_renumbering();
2894  getMesh().allow_renumbering(false);
2895 
2896  // For now, only read the recovery mesh on the Ultimate Master..
2897  // sub-apps need to just build their mesh like normal
2898  {
2899  TIME_SECTION("readRecoveredMesh", 2);
2901  }
2902 
2903  getMesh().allow_renumbering(allow_renumbering_later);
2904  getMesh().skip_partitioning(skip_partitioning_later);
2905  }
2906  else // Normally just build the mesh
2907  {
2908  // Don't allow partitioning during building
2909  if (_app.isSplitMesh())
2910  getMesh().skip_partitioning(true);
2911  buildMesh();
2912 
2913  // Re-enable partitioning so the splitter can partition!
2914  if (_app.isSplitMesh())
2915  getMesh().skip_partitioning(false);
2916 
2917  if (getParam<bool>("build_all_side_lowerd_mesh"))
2918  buildLowerDMesh();
2919  }
2920 }
static const std::string & checkpointSuffix()
The file suffix for the checkpoint mesh.
Definition: MooseApp.C:3011
virtual void read(const std::string &name, void *mesh_data=nullptr, bool skip_renumber_nodes_and_elements=false, bool skip_find_neighbors=false)=0
bool isUltimateMaster() const
Whether or not this app is the ultimate master app.
Definition: MooseApp.h:847
void allow_renumbering(bool allow)
void skip_partitioning(bool skip)
void buildLowerDMesh()
Build lower-d mesh for all sides.
Definition: MooseMesh.C:655
virtual void buildMesh()=0
Must be overridden by child classes.
bool isSplitMesh() const
Whether or not this is a split mesh operation.
Definition: MooseApp.C:1781
bool _allow_recovery
Whether or not this Mesh is allowed to read a recovery file.
Definition: MooseMesh.h:1819
bool _use_distributed_mesh
False by default.
Definition: MooseMesh.h:1428
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
std::unique_ptr< MeshBase > buildMeshBaseObject(unsigned int dim=libMesh::invalid_uint)
Method to construct a libMesh::MeshBase object that is normally set and used by the MooseMesh object ...
Definition: MooseMesh.C:2851
MooseApp & _app
The MOOSE application this is associated with.
Definition: MooseBase.h:84
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1433
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.
bool isRecovering() const
Whether or not this is a "recover" calculation.
Definition: MooseApp.C:1769
std::string getRestartRecoverFileBase() const
The file_base for the recovery file.
Definition: MooseApp.h:527

◆ interiorLowerDBlocks()

const std::set<SubdomainID>& MooseMesh::interiorLowerDBlocks ( ) const
inline

◆ isBoundaryElem() [1/2]

bool MooseMesh::isBoundaryElem ( dof_id_type  elem_id) const

Returns true if the requested element is in the list of boundary elements, false otherwise.

Definition at line 3586 of file MooseMesh.C.

Referenced by BoundaryMarker::computeElementMarker().

3587 {
3588  bool found_elem = false;
3589  for (const auto & it : _bnd_elem_ids)
3590  {
3591  if (it.second.find(elem_id) != it.second.end())
3592  {
3593  found_elem = true;
3594  break;
3595  }
3596  }
3597  return found_elem;
3598 }
std::unordered_map< boundary_id_type, std::unordered_set< dof_id_type > > _bnd_elem_ids
Map of set of elem IDs connected to each boundary.
Definition: MooseMesh.h:1545

◆ isBoundaryElem() [2/2]

bool MooseMesh::isBoundaryElem ( dof_id_type  elem_id,
BoundaryID  bnd_id 
) const

Returns true if the requested element is in the list of boundary elements for the specified boundary, false otherwise.

Definition at line 3601 of file MooseMesh.C.

3602 {
3603  bool found_elem = false;
3604  auto it = _bnd_elem_ids.find(bnd_id);
3605  if (it != _bnd_elem_ids.end())
3606  if (it->second.find(elem_id) != it->second.end())
3607  found_elem = true;
3608  return found_elem;
3609 }
std::unordered_map< boundary_id_type, std::unordered_set< dof_id_type > > _bnd_elem_ids
Map of set of elem IDs connected to each boundary.
Definition: MooseMesh.h:1545

◆ isBoundaryFullyExternalToSubdomains()

bool MooseMesh::isBoundaryFullyExternalToSubdomains ( BoundaryID  bid,
const std::set< SubdomainID > &  blk_group 
) const

Returns whether a boundary (given by its id) is not crossing through a group of blocks, by which we mean that elements on both sides of the boundary are in those blocks.

Parameters
bidthe id of the boundary of interest
blk_groupthe group of blocks potentially traversed
Returns
whether the boundary does not cross between the subdomains in the group

Definition at line 1370 of file MooseMesh.C.

1372 {
1373  mooseAssert(_bnd_elem_range, "Boundary element range is not initialized");
1374 
1375  // Loop over all side elements of the mesh, select those on the boundary
1376  for (const auto & bnd_elem : *_bnd_elem_range)
1377  {
1378  const auto & [elem_ptr, elem_side, elem_bid] = *bnd_elem;
1379  if (elem_bid == bid)
1380  {
1381  // If an element is internal to the group of subdomain, check the neighbor
1382  if (blk_group.find(elem_ptr->subdomain_id()) != blk_group.end())
1383  {
1384  const auto * const neighbor = elem_ptr->neighbor_ptr(elem_side);
1385 
1386  // If we did not ghost the neighbor, we cannot decide
1387  if (neighbor == libMesh::remote_elem)
1388  mooseError("Insufficient level of geometrical ghosting to determine "
1389  "if a boundary is internal to the mesh");
1390  // If the neighbor does not exist, then we are on the edge of the mesh
1391  if (!neighbor)
1392  continue;
1393  // If the neighbor is also in the group of subdomain,
1394  // then the boundary cuts the subdomains
1395  if (blk_group.find(neighbor->subdomain_id()) != blk_group.end())
1396  return false;
1397  }
1398  }
1399  }
1400  return true;
1401 }
std::unique_ptr< libMesh::StoredRange< MooseMesh::const_bnd_elem_iterator, const BndElement * > > _bnd_elem_range
Definition: MooseMesh.h:1502
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.
const RemoteElem * remote_elem

◆ isBoundaryNode() [1/2]

bool MooseMesh::isBoundaryNode ( dof_id_type  node_id) const

Returns true if the requested node is in the list of boundary nodes, false otherwise.

Definition at line 3560 of file MooseMesh.C.

Referenced by LowerBoundNodalKernel::computeQpJacobian(), UpperBoundNodalKernel::computeQpJacobian(), LowerBoundNodalKernel::computeQpOffDiagJacobian(), UpperBoundNodalKernel::computeQpOffDiagJacobian(), LowerBoundNodalKernel::computeQpResidual(), UpperBoundNodalKernel::computeQpResidual(), and NodalNormalsPreprocessor::execute().

3561 {
3562  bool found_node = false;
3563  for (const auto & it : _bnd_node_ids)
3564  {
3565  if (it.second.find(node_id) != it.second.end())
3566  {
3567  found_node = true;
3568  break;
3569  }
3570  }
3571  return found_node;
3572 }
std::map< boundary_id_type, std::set< dof_id_type > > _bnd_node_ids
Map of sets of node IDs in each boundary.
Definition: MooseMesh.h:1537

◆ isBoundaryNode() [2/2]

bool MooseMesh::isBoundaryNode ( dof_id_type  node_id,
BoundaryID  bnd_id 
) const

Returns true if the requested node is in the list of boundary nodes for the specified boundary, false otherwise.

Definition at line 3575 of file MooseMesh.C.

3576 {
3577  bool found_node = false;
3578  std::map<boundary_id_type, std::set<dof_id_type>>::const_iterator it = _bnd_node_ids.find(bnd_id);
3579  if (it != _bnd_node_ids.end())
3580  if (it->second.find(node_id) != it->second.end())
3581  found_node = true;
3582  return found_node;
3583 }
std::map< boundary_id_type, std::set< dof_id_type > > _bnd_node_ids
Map of sets of node IDs in each boundary.
Definition: MooseMesh.h:1537

◆ isCustomPartitionerRequested()

bool MooseMesh::isCustomPartitionerRequested ( ) const

Setter and getter for _custom_partitioner_requested.

Definition at line 3700 of file MooseMesh.C.

3701 {
3703 }
bool _custom_partitioner_requested
Definition: MooseMesh.h:1441

◆ isDisplaced() [1/2]

void MooseMesh::isDisplaced ( bool  is_displaced)
inline

Set whether this mesh is a displaced mesh.

Definition at line 1208 of file MooseMesh.h.

1208 { _is_displaced = is_displaced; }
bool _is_displaced
Whether this mesh is displaced.
Definition: MooseMesh.h:1849

◆ isDisplaced() [2/2]

bool MooseMesh::isDisplaced ( ) const
inline

whether this mesh is a displaced mesh

Definition at line 1213 of file MooseMesh.h.

1213 { return _is_displaced; }
bool _is_displaced
Whether this mesh is displaced.
Definition: MooseMesh.h:1849

◆ isDistributedMesh()

virtual bool MooseMesh::isDistributedMesh ( ) const
inlinevirtual

◆ isFiniteVolumeInfoDirty()

bool MooseMesh::isFiniteVolumeInfoDirty ( ) const
inline
Returns
whether the finite volume information is dirty

Definition at line 1304 of file MooseMesh.h.

Referenced by SideIntegralPostprocessor::initialSetup(), and FEProblemBase::meshChanged().

1304 { return _finite_volume_info_dirty; }
bool _finite_volume_info_dirty
Definition: MooseMesh.h:1615

◆ isLowerD()

bool MooseMesh::isLowerD ( const SubdomainID  subdomain_id) const
inline
Returns
Whether the subdomain indicated by subdomain_id is a lower-dimensional manifold of some higher-dimensional subdomain, or in implementation speak, whether the elements of this subdomain have non-null interior parents

Definition at line 2197 of file MooseMesh.h.

Referenced by ProjectionAux::computeValue(), ProjectionAux::elemOnNodeVariableIsDefinedOn(), MooseVariableBase::MooseVariableBase(), and ProjectionAux::ProjectionAux().

2198 {
2199  return libmesh_map_find(_sub_to_data, subdomain_id).is_lower_d;
2200 }
std::unordered_map< SubdomainID, SubdomainData > _sub_to_data
Holds a map from subdomain ids to associated data.
Definition: MooseMesh.h:1800

◆ isParallelTypeForced()

bool MooseMesh::isParallelTypeForced ( ) const
inline

Tell the user if the distribution was overriden for any reason.

Definition at line 1006 of file MooseMesh.h.

1006 { return _parallel_type_overridden; }
bool _parallel_type_overridden
Definition: MooseMesh.h:1430

◆ isParamSetByUser()

bool MooseBaseParameterInterface::isParamSetByUser ( const std::string &  nm) const
inlineinherited

Test if the supplied parameter is set by a user, as opposed to not set or set to default.

Parameters
nmThe name of the parameter to test

Definition at line 128 of file MooseBaseParameterInterface.h.

Referenced by SetupDebugAction::act(), ADConservativeAdvectionBC::ADConservativeAdvectionBC(), DiffusionCG::addFEBCs(), DiffusionPhysicsBase::addInitialConditions(), MFEMMesh::buildMesh(), LibtorchNeuralNetControl::conditionalParameterError(), DiffusionPhysicsBase::DiffusionPhysicsBase(), ElementSubdomainModifierBase::ElementSubdomainModifierBase(), FixedPointSolve::FixedPointSolve(), MooseBaseParameterInterface::getRenamedParam(), DefaultNonlinearConvergence::getSharedExecutionerParam(), AddVariableAction::init(), PhysicsBase::initializePhysics(), ElementSubdomainModifierBase::initialSetup(), MatrixSymmetryCheck::MatrixSymmetryCheck(), MeshDiagnosticsGenerator::MeshDiagnosticsGenerator(), MultiAppGeneralFieldTransfer::MultiAppGeneralFieldTransfer(), SolutionInvalidityOutput::output(), Output::Output(), MultiAppGeneralFieldTransfer::outputValueConflicts(), PetscExternalPartitioner::partition(), PiecewiseTabularBase::PiecewiseTabularBase(), prepare(), SolutionUserObjectBase::readXda(), PhysicsBase::reportPotentiallyMissedParameters(), MFEMSolverBase::setPreconditioner(), SideSetsFromBoundingBoxGenerator::SideSetsFromBoundingBoxGenerator(), TimedSubdomainModifier::TimedSubdomainModifier(), and XYDelaunayGenerator::XYDelaunayGenerator().

128 { return _pars.isParamSetByUser(nm); }
bool isParamSetByUser(const std::string &name) const
Method returns true if the parameter was by the user.
const InputParameters & _pars
Parameters of this object, references the InputParameters stored in the InputParametersWarehouse.

◆ isParamValid()

bool MooseBaseParameterInterface::isParamValid ( const std::string &  name) const
inlineinherited

Test if the supplied parameter is valid.

Parameters
nameThe name of the parameter to test

Definition at line 122 of file MooseBaseParameterInterface.h.

Referenced by HierarchicalGridPartitioner::_do_partition(), GridPartitioner::_do_partition(), CopyNodalVarsAction::act(), SetupMeshAction::act(), SetupDebugAction::act(), ComposeTimeStepperAction::act(), SetAdaptivityOptionsAction::act(), AddVariableAction::act(), CreateDisplacedProblemAction::act(), CommonOutputAction::act(), ADConservativeAdvectionBC::ADConservativeAdvectionBC(), DiffusionCG::addFEKernels(), DiffusionFV::addFVBCs(), DiffusionFV::addFVKernels(), DiffusionPhysicsBase::addInitialConditions(), CylinderComponent::addMeshGenerators(), AddPeriodicBCAction::AddPeriodicBCAction(), DiffusionPhysicsBase::addPostprocessors(), AdvectiveFluxAux::AdvectiveFluxAux(), ArrayHFEMDirichletBC::ArrayHFEMDirichletBC(), ArrayVarReductionAux::ArrayVarReductionAux(), AddPeriodicBCAction::autoTranslationBoundaries(), BicubicSplineFunction::BicubicSplineFunction(), BlockDeletionGenerator::BlockDeletionGenerator(), TimedSubdomainModifier::buildFromFile(), PiecewiseTabularBase::buildFromFile(), PiecewiseTabularBase::buildFromJSON(), ParsedChainControl::buildFunction(), GeneratedMesh::buildMesh(), buildTypedMesh(), CartesianGridDivision::CartesianGridDivision(), CartesianMeshGenerator::CartesianMeshGenerator(), LibmeshPartitioner::clone(), SampledOutput::cloneMesh(), CombinerGenerator::CombinerGenerator(), FunctorAux::computeValue(), ConservativeAdvectionTempl< is_ad >::ConservativeAdvectionTempl(), CopyMeshPartitioner::CopyMeshPartitioner(), CSVReaderVectorPostprocessor::CSVReaderVectorPostprocessor(), CutMeshByLevelSetGeneratorBase::CutMeshByLevelSetGeneratorBase(), ConstantReporter::declareConstantReporterValues(), DGKernelBase::DGKernelBase(), DiffusionFluxAux::DiffusionFluxAux(), DomainUserObject::DomainUserObject(), DynamicObjectRegistrationAction::DynamicObjectRegistrationAction(), Eigenvalue::Eigenvalue(), ElementGroupCentroidPositions::ElementGroupCentroidPositions(), PIDTransientControl::execute(), MultiAppNearestNodeTransfer::execute(), MultiAppUserObjectTransfer::execute(), Exodus::Exodus(), ExtraIDIntegralReporter::ExtraIDIntegralReporter(), FEProblemBase::FEProblemBase(), FEProblemSolve::FEProblemSolve(), FieldSplitPreconditioner::FieldSplitPreconditioner(), FileOutput::FileOutput(), SpatialUserObjectVectorPostprocessor::fillPoints(), CombinerGenerator::fillPositions(), MultiApp::fillPositions(), FiniteDifferencePreconditioner::FiniteDifferencePreconditioner(), FunctionDT::FunctionDT(), FunctionValuePostprocessor::FunctionValuePostprocessor(), FVInterfaceKernel::FVInterfaceKernel(), FVMassMatrix::FVMassMatrix(), AddMetaDataGenerator::generate(), BreakBoundaryOnSubdomainGenerator::generate(), ElementGenerator::generate(), ExtraNodesetGenerator::generate(), FileMeshGenerator::generate(), LowerDBlockFromSidesetGenerator::generate(), SubdomainPerElementGenerator::generate(), BlockDeletionGenerator::generate(), ParsedSubdomainGeneratorBase::generate(), GeneratedMeshGenerator::generate(), MeshExtruderGenerator::generate(), ParsedExtraElementIDGenerator::generate(), XYZDelaunayGenerator::generate(), XYDelaunayGenerator::generate(), XYMeshLineCutter::generate(), SubdomainBoundingBoxGenerator::generate(), DistributedRectilinearMeshGenerator::generate(), PropertyReadFile::getFileNames(), MultiAppNearestNodeTransfer::getLocalEntitiesAndComponents(), MeshGenerator::getMeshGeneratorNameFromParam(), MeshGenerator::getMeshGeneratorNamesFromParam(), MooseBaseParameterInterface::getRenamedParam(), MultiAppNearestNodeTransfer::getTargetLocalNodes(), Terminator::handleMessage(), HFEMDirichletBC::HFEMDirichletBC(), EigenExecutionerBase::init(), IterationAdaptiveDT::init(), Eigenvalue::init(), AdvancedOutput::initExecutionTypes(), BlockRestrictable::initializeBlockRestrictable(), BoundaryRestrictable::initializeBoundaryRestrictable(), MultiAppCloneReporterTransfer::initialSetup(), SolutionIC::initialSetup(), MultiAppVariableValueSampleTransfer::initialSetup(), PiecewiseTabularBase::initialSetup(), ParsedConvergence::initialSetup(), SolutionScalarAux::initialSetup(), SolutionAux::initialSetup(), Console::initialSetup(), MooseParsedVectorFunction::initialSetup(), MultiAppGeneralFieldTransfer::initialSetup(), MooseParsedGradFunction::initialSetup(), MooseParsedFunction::initialSetup(), SampledOutput::initSample(), IterationAdaptiveDT::IterationAdaptiveDT(), LeastSquaresFit::LeastSquaresFit(), LibmeshPartitioner::LibmeshPartitioner(), LibtorchNeuralNetControl::LibtorchNeuralNetControl(), MassMatrix::MassMatrix(), MatCoupledForce::MatCoupledForce(), MatDiffusionBase< Real >::MatDiffusionBase(), MeshGeneratorComponent::MeshGeneratorComponent(), MooseMesh(), MoosePreconditioner::MoosePreconditioner(), MooseStaticCondensationPreconditioner::MooseStaticCondensationPreconditioner(), MooseVariableBase::MooseVariableBase(), MooseVariableFV< Real >::MooseVariableFV(), MortarConstraintBase::MortarConstraintBase(), MoveNodeGenerator::MoveNodeGenerator(), MultiApp::MultiApp(), MultiAppCloneReporterTransfer::MultiAppCloneReporterTransfer(), MultiAppGeneralFieldNearestLocationTransfer::MultiAppGeneralFieldNearestLocationTransfer(), MultiAppGeneralFieldShapeEvaluationTransfer::MultiAppGeneralFieldShapeEvaluationTransfer(), MultiAppGeneralFieldTransfer::MultiAppGeneralFieldTransfer(), MultiAppGeneralFieldUserObjectTransfer::MultiAppGeneralFieldUserObjectTransfer(), MultiAppPostprocessorInterpolationTransfer::MultiAppPostprocessorInterpolationTransfer(), MultiAppPostprocessorTransfer::MultiAppPostprocessorTransfer(), MultiAppReporterTransfer::MultiAppReporterTransfer(), MultiAppTransfer::MultiAppTransfer(), MultiAppUserObjectTransfer::MultiAppUserObjectTransfer(), MultiAppVariableValueSampleTransfer::MultiAppVariableValueSampleTransfer(), MultiSystemSolveObject::MultiSystemSolveObject(), NodeSetsGeneratorBase::NodeSetsGeneratorBase(), EigenExecutionerBase::normalizeSolution(), Output::Output(), MultiAppGeneralFieldTransfer::outputValueConflicts(), ParsedCurveGenerator::ParsedCurveGenerator(), PetscOutput::PetscOutput(), PhysicsBasedPreconditioner::PhysicsBasedPreconditioner(), PIDTransientControl::PIDTransientControl(), PiecewiseTabularBase::PiecewiseTabularBase(), PlaneIDMeshGenerator::PlaneIDMeshGenerator(), prepare(), MooseBaseParameterInterface::queryParam(), MultiApp::readCommandLineArguments(), SolutionUserObjectBase::readExodusII(), ReferenceResidualInterface::ReferenceResidualInterface(), RenameBlockGenerator::RenameBlockGenerator(), ReporterPointSource::ReporterPointSource(), PhysicsBase::reportPotentiallyMissedParameters(), ParsedSubdomainMeshGenerator::setBlockName(), setCoordSystem(), FileOutput::setFileBase(), FileOutput::setFileBaseInternal(), Split::setup(), SideSetsGeneratorBase::setup(), SetupMeshAction::setupMesh(), SideDiffusiveFluxIntegralTempl< is_ad, Real >::SideDiffusiveFluxIntegralTempl(), SideSetsGeneratorBase::SideSetsGeneratorBase(), SolutionUserObjectBase::SolutionUserObjectBase(), FEProblemSolve::solve(), WebServerControl::startServer(), Terminator::Terminator(), TimeIntervalTimes::TimeIntervalTimes(), TimePeriod::TimePeriod(), MultiAppDofCopyTransfer::transfer(), TransformGenerator::TransformGenerator(), FunctorIC::value(), VariableCondensationPreconditioner::VariableCondensationPreconditioner(), VectorMagnitudeFunctorMaterialTempl< is_ad >::VectorMagnitudeFunctorMaterialTempl(), WebServerControl::WebServerControl(), XYDelaunayGenerator::XYDelaunayGenerator(), and XYZDelaunayGenerator::XYZDelaunayGenerator().

122 { return _pars.isParamValid(name); }
const InputParameters & _pars
Parameters of this object, references the InputParameters stored in the InputParametersWarehouse.
bool isParamValid(const std::string &name) const
This method returns parameters that have been initialized in one fashion or another, i.e.

◆ isPartitionerForced()

bool MooseMesh::isPartitionerForced ( ) const
inline

Tell the user if the partitioner was overriden for any reason.

Definition at line 1026 of file MooseMesh.h.

1026 { return _partitioner_overridden; }
bool _partitioner_overridden
Definition: MooseMesh.h:1437

◆ isRegularOrthogonal()

bool MooseMesh::isRegularOrthogonal ( )
inline

Getter to query if the mesh was detected to be regular and orthogonal.

Definition at line 1056 of file MooseMesh.h.

Referenced by AddPeriodicBCAction::setPeriodicVars().

1056 { return _regular_orthogonal_mesh; }
bool _regular_orthogonal_mesh
Boolean indicating whether this mesh was detected to be regular and orthogonal.
Definition: MooseMesh.h:1577

◆ isSemiLocal()

bool MooseMesh::isSemiLocal ( Node *const  node) const

Returns true if the node is semi-local.

Parameters
nodeNode pointer
Returns
true is the node is semi-local, false otherwise

Definition at line 989 of file MooseMesh.C.

990 {
991  return _semilocal_node_list.find(node) != _semilocal_node_list.end();
992 }
std::set< Node * > _semilocal_node_list
Used for generating the semilocal node range.
Definition: MooseMesh.h:1488
virtual const Node & node(const dof_id_type i) const
Various accessors (pointers/references) for Node "i".
Definition: MooseMesh.C:817

◆ isSplit()

bool MooseMesh::isSplit ( ) const
inline
Returns
Whether or not this mesh comes from a split mesh

Definition at line 1327 of file MooseMesh.h.

1327 { return _is_split; }
const bool _is_split
Whether or not we are using a (pre-)split mesh (automatically DistributedMesh)
Definition: MooseMesh.h:1586

◆ isTranslatedPeriodic()

bool MooseMesh::isTranslatedPeriodic ( unsigned int  nonlinear_var_num,
unsigned int  component 
) const

Returns whether this generated mesh is periodic in the given dimension for the given variable.

Parameters
nonlinear_var_num- The nonlinear variable number
component- An integer representing the desired component (dimension)

Definition at line 2246 of file MooseMesh.C.

Referenced by minPeriodicVector().

2247 {
2248  mooseAssert(component < dimension(), "Requested dimension out of bounds");
2249 
2250  if (_periodic_dim.find(nonlinear_var_num) != _periodic_dim.end())
2251  return _periodic_dim.at(nonlinear_var_num)[component];
2252  else
2253  return false;
2254 }
virtual unsigned int dimension() const
Returns MeshBase::mesh_dimension(), (not MeshBase::spatial_dimension()!) of the underlying libMesh me...
Definition: MooseMesh.C:2923
std::map< unsigned int, std::vector< bool > > _periodic_dim
A map of vectors indicating which dimensions are periodic in a regular orthogonal mesh for the specif...
Definition: MooseMesh.h:1626

◆ lengthUnit()

const MooseUnits & MooseMesh::lengthUnit ( ) const
Returns
the length unit of this mesh provided through the coordinate transformation object

Definition at line 4299 of file MooseMesh.C.

4300 {
4301  mooseAssert(_coord_transform, "This must be non-null");
4302  return _coord_transform->lengthUnit();
4303 }
std::unique_ptr< MooseAppCoordTransform > _coord_transform
A coordinate transformation object that describes how to transform this problem&#39;s coordinate system i...
Definition: MooseMesh.h:1868

◆ localNodesBegin() [1/2]

MeshBase::node_iterator MooseMesh::localNodesBegin ( )

Calls local_nodes_begin/end() on the underlying libMesh mesh object.

Definition at line 3022 of file MooseMesh.C.

3023 {
3024  return getMesh().local_nodes_begin();
3025 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443

◆ localNodesBegin() [2/2]

MeshBase::const_node_iterator MooseMesh::localNodesBegin ( ) const

Definition at line 3034 of file MooseMesh.C.

3035 {
3036  return getMesh().local_nodes_begin();
3037 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443

◆ localNodesEnd() [1/2]

MeshBase::node_iterator MooseMesh::localNodesEnd ( )

Definition at line 3028 of file MooseMesh.C.

3029 {
3030  return getMesh().local_nodes_end();
3031 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443

◆ localNodesEnd() [2/2]

MeshBase::const_node_iterator MooseMesh::localNodesEnd ( ) const

Definition at line 3040 of file MooseMesh.C.

3041 {
3042  return getMesh().local_nodes_end();
3043 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443

◆ mapPoints()

void MooseMesh::mapPoints ( const std::vector< Point > &  from,
const std::vector< Point > &  to,
std::vector< QpMap > &  qp_map 
)
private

Find the closest points that map "from" to "to" and fill up "qp_map".

Essentially, for each point in "from" find the closest point in "to".

Parameters
fromThe reference positions in the parent of the the points we're mapping from
toThe reference positions in the parent of the the points we're mapping to
qp_mapThis will be filled with QpMap objects holding the mappings.

Definition at line 2585 of file MooseMesh.C.

Referenced by buildPRefinementAndCoarseningMaps(), and findAdaptivityQpMaps().

2588 {
2589  unsigned int n_from = from.size();
2590  unsigned int n_to = to.size();
2591 
2592  qp_map.resize(n_from);
2593 
2594  for (unsigned int i = 0; i < n_from; ++i)
2595  {
2596  const Point & from_point = from[i];
2597 
2598  QpMap & current_map = qp_map[i];
2599 
2600  for (unsigned int j = 0; j < n_to; ++j)
2601  {
2602  const Point & to_point = to[j];
2603  Real distance = (from_point - to_point).norm();
2604 
2605  if (distance < current_map._distance)
2606  {
2607  current_map._distance = distance;
2608  current_map._from = i;
2609  current_map._to = j;
2610  }
2611  }
2612  }
2613 }
Helper object for holding qp mapping info.
Definition: MooseMesh.h:69
unsigned int _to
The qp to map to.
Definition: MooseMesh.h:78
Real distance(const Point &p)
unsigned int _from
The qp to map from.
Definition: MooseMesh.h:75
auto norm(const T &a) -> decltype(std::abs(a))
DIE A HORRIBLE DEATH HERE typedef LIBMESH_DEFAULT_SCALAR_TYPE Real
Real _distance
The distance between them.
Definition: MooseMesh.h:81

◆ markFiniteVolumeInfoDirty()

void MooseMesh::markFiniteVolumeInfoDirty ( )
inline

Mark the finite volume information as dirty.

Definition at line 1299 of file MooseMesh.h.

1299 { _finite_volume_info_dirty = true; }
bool _finite_volume_info_dirty
Definition: MooseMesh.h:1615

◆ maxElementID()

dof_id_type MooseMesh::maxElementID ( unsigned int  elem_id_index) const
inline

Return the maximum element ID for an extra element integer with its accessing index.

Definition at line 1119 of file MooseMesh.h.

1119 { return _max_ids[elem_id_index]; }
std::vector< dof_id_type > _max_ids
Maximum integer ID for each extra element integer.
Definition: MooseMesh.h:1842

◆ maxElemId()

dof_id_type MooseMesh::maxElemId ( ) const
virtual

Definition at line 3088 of file MooseMesh.C.

Referenced by SolutionUserObjectBase::pointValueGradientWrapper(), and SolutionUserObjectBase::pointValueWrapper().

3089 {
3090  return getMesh().max_elem_id();
3091 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
virtual dof_id_type max_elem_id() const=0

◆ maxHLevel()

unsigned int MooseMesh::maxHLevel ( ) const
inline

Returns the maximum h-refinement level of all elements.

Definition at line 1362 of file MooseMesh.h.

1362 { return _max_h_level; }
unsigned int _max_h_level
Maximum h-refinement level of all elements.
Definition: MooseMesh.h:1881

◆ maxNodeId()

dof_id_type MooseMesh::maxNodeId ( ) const
virtual

Calls max_node/elem_id() on the underlying libMesh mesh object.

This may be larger than n_nodes/elem() in cases where the id numbering is not contiguous.

Definition at line 3082 of file MooseMesh.C.

3083 {
3084  return getMesh().max_node_id();
3085 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
virtual dof_id_type max_node_id() const=0

◆ maxPLevel()

unsigned int MooseMesh::maxPLevel ( ) const
inline

Returns the maximum p-refinement level of all elements.

Definition at line 1357 of file MooseMesh.h.

1357 { return _max_p_level; }
unsigned int _max_p_level
Maximum p-refinement level of all elements.
Definition: MooseMesh.h:1879

◆ meshBoundaryIds()

const std::set< BoundaryID > & MooseMesh::meshBoundaryIds ( ) const

Returns a read-only reference to the set of boundary IDs currently present in the Mesh.

Definition at line 3172 of file MooseMesh.C.

Referenced by BoundaryRestrictable::isBoundarySubset().

3173 {
3174  return _mesh_boundary_ids;
3175 }
std::set< BoundaryID > _mesh_boundary_ids
A set of boundary IDs currently present in the mesh.
Definition: MooseMesh.h:1524

◆ meshChanged()

void MooseMesh::meshChanged ( )

Declares that the MooseMesh has changed, invalidates cached data and rebuilds caches.

Sets a flag so that clients of the MooseMesh also know when it has changed.

Definition at line 879 of file MooseMesh.C.

Referenced by DisplacedProblem::init(), FEProblemBase::init(), DisplacedProblem::meshChanged(), and FEProblemBase::meshChanged().

880 {
881  TIME_SECTION("meshChanged", 3, "Updating Because Mesh Changed");
882 
883  update();
884 
885  // Delete all of the cached ranges
886  _active_local_elem_range.reset();
887  _active_node_range.reset();
889  _local_node_range.reset();
890  _bnd_node_range.reset();
891  _bnd_elem_range.reset();
892 
893  // Rebuild the ranges
899 
900  // Call the callback function onMeshChanged
901  onMeshChanged();
902 }
std::unique_ptr< libMesh::NodeRange > _active_node_range
Definition: MooseMesh.h:1497
libMesh::ConstElemRange * getActiveLocalElementRange()
Return pointers to range objects for various types of ranges (local nodes, boundary elems...
Definition: MooseMesh.C:1235
virtual void onMeshChanged()
Declares a callback function that is executed at the conclusion of meshChanged(). ...
Definition: MooseMesh.C:905
std::unique_ptr< libMesh::StoredRange< MooseMesh::const_bnd_elem_iterator, const BndElement * > > _bnd_elem_range
Definition: MooseMesh.h:1502
std::unique_ptr< libMesh::ConstElemRange > _active_local_elem_range
A range for use with threading.
Definition: MooseMesh.h:1494
libMesh::ConstNodeRange * getLocalNodeRange()
Definition: MooseMesh.C:1272
void update()
Calls buildNodeListFromSideList(), buildNodeList(), and buildBndElemList().
Definition: MooseMesh.C:616
libMesh::NodeRange * getActiveNodeRange()
Definition: MooseMesh.C:1249
libMesh::StoredRange< MooseMesh::const_bnd_elem_iterator, const BndElement * > * getBoundaryElementRange()
Definition: MooseMesh.C:1300
std::unique_ptr< libMesh::ConstNodeRange > _local_node_range
Definition: MooseMesh.h:1498
libMesh::StoredRange< MooseMesh::const_bnd_node_iterator, const BndNode * > * getBoundaryNodeRange()
Definition: MooseMesh.C:1286
std::unique_ptr< libMesh::StoredRange< MooseMesh::const_bnd_node_iterator, const BndNode * > > _bnd_node_range
Definition: MooseMesh.h:1500
std::unique_ptr< SemiLocalNodeRange > _active_semilocal_node_range
Definition: MooseMesh.h:1496

◆ meshNodesetIds()

const std::set< BoundaryID > & MooseMesh::meshNodesetIds ( ) const

Returns a read-only reference to the set of nodesets currently present in the Mesh.

Definition at line 3184 of file MooseMesh.C.

Referenced by GeometricSearchData::GeometricSearchData(), and BoundaryRestrictable::initializeBoundaryRestrictable().

3185 {
3186  return _mesh_nodeset_ids;
3187 }
std::set< BoundaryID > _mesh_nodeset_ids
Definition: MooseMesh.h:1526

◆ meshSidesetIds()

const std::set< BoundaryID > & MooseMesh::meshSidesetIds ( ) const

Returns a read-only reference to the set of sidesets currently present in the Mesh.

Definition at line 3178 of file MooseMesh.C.

Referenced by DGKernelBase::DGKernelBase(), and BoundaryRestrictable::initializeBoundaryRestrictable().

3179 {
3180  return _mesh_sideset_ids;
3181 }
std::set< BoundaryID > _mesh_sideset_ids
Definition: MooseMesh.h:1525

◆ meshSubdomains()

const std::set< SubdomainID > & MooseMesh::meshSubdomains ( ) const

◆ minElementID()

dof_id_type MooseMesh::minElementID ( unsigned int  elem_id_index) const
inline

Return the minimum element ID for an extra element integer with its accessing index.

Definition at line 1124 of file MooseMesh.h.

1124 { return _min_ids[elem_id_index]; }
std::vector< dof_id_type > _min_ids
Minimum integer ID for each extra element integer.
Definition: MooseMesh.h:1844

◆ minPeriodicDistance()

Real MooseMesh::minPeriodicDistance ( unsigned int  nonlinear_var_num,
Point  p,
Point  q 
) const

This function returns the distance between two points on the mesh taking into account periodicity for the given variable number.

Parameters
nonlinear_var_num- The nonlinear variable number
p,q- The points for which to compute a minimum distance
Returns
Real - The L2 distance between p and q

Definition at line 2282 of file MooseMesh.C.

2283 {
2284  return minPeriodicVector(nonlinear_var_num, p, q).norm();
2285 }
auto norm() const -> decltype(std::norm(Real()))
RealVectorValue minPeriodicVector(unsigned int nonlinear_var_num, Point p, Point q) const
This function returns the minimum vector between two points on the mesh taking into account periodici...
Definition: MooseMesh.C:2257

◆ minPeriodicVector()

RealVectorValue MooseMesh::minPeriodicVector ( unsigned int  nonlinear_var_num,
Point  p,
Point  q 
) const

This function returns the minimum vector between two points on the mesh taking into account periodicity for the given variable number.

Parameters
nonlinear_var_num- The nonlinear variable number
p,q- The points between which to compute a minimum vector
Returns
RealVectorValue - The vector pointing from p to q

Definition at line 2257 of file MooseMesh.C.

Referenced by minPeriodicDistance().

2258 {
2259  for (unsigned int i = 0; i < dimension(); ++i)
2260  {
2261  // check to see if we're closer in real or periodic space in x, y, and z
2262  if (isTranslatedPeriodic(nonlinear_var_num, i))
2263  {
2264  // Need to test order before differencing
2265  if (p(i) > q(i))
2266  {
2267  if (p(i) - q(i) > _half_range(i))
2268  p(i) -= _half_range(i) * 2;
2269  }
2270  else
2271  {
2272  if (q(i) - p(i) > _half_range(i))
2273  p(i) += _half_range(i) * 2;
2274  }
2275  }
2276  }
2277 
2278  return q - p;
2279 }
RealVectorValue _half_range
A convenience vector used to hold values in each dimension representing half of the range...
Definition: MooseMesh.h:1631
bool isTranslatedPeriodic(unsigned int nonlinear_var_num, unsigned int component) const
Returns whether this generated mesh is periodic in the given dimension for the given variable...
Definition: MooseMesh.C:2246
virtual unsigned int dimension() const
Returns MeshBase::mesh_dimension(), (not MeshBase::spatial_dimension()!) of the underlying libMesh me...
Definition: MooseMesh.C:2923

◆ mooseDeprecated()

template<typename... Args>
void MooseBaseErrorInterface::mooseDeprecated ( Args &&...  args) const
inlineinherited

Definition at line 91 of file MooseBaseErrorInterface.h.

Referenced by FEProblemBase::addAuxArrayVariable(), FEProblemBase::addAuxScalarVariable(), FEProblemBase::addAuxVariable(), FEProblemBase::advanceMultiApps(), MultiApp::appProblem(), buildSideList(), ChangeOverTimestepPostprocessor::ChangeOverTimestepPostprocessor(), AddVariableAction::determineType(), EigenProblem::EigenProblem(), Eigenvalue::Eigenvalue(), elem(), UserForcingFunction::f(), FaceFaceConstraint::FaceFaceConstraint(), FunctionDT::FunctionDT(), RandomICBase::generateRandom(), getBoundariesToElems(), DataFileInterface::getDataFileName(), DataFileInterface::getDataFileNameByName(), Control::getExecuteOptions(), FEProblemBase::getNonlinearSystem(), FEProblemBase::getUserObjects(), FEProblemBase::hasPostprocessor(), MatDiffusionBase< Real >::MatDiffusionBase(), MultiAppNearestNodeTransfer::MultiAppNearestNodeTransfer(), MultiAppShapeEvaluationTransfer::MultiAppShapeEvaluationTransfer(), MultiAppUserObjectTransfer::MultiAppUserObjectTransfer(), NodalScalarKernel::NodalScalarKernel(), node(), FixedPointSolve::numPicardIts(), RelationshipManager::operator>=(), PercentChangePostprocessor::PercentChangePostprocessor(), ReferenceResidualConvergence::ReferenceResidualConvergence(), Residual::Residual(), setBoundaryToNormalMap(), Exodus::setOutputDimension(), and UserForcingFunction::UserForcingFunction().

92  {
94  _console, false, true, _moose_base.errorPrefix("deprecation"), std::forward<Args>(args)...);
95  }
std::string errorPrefix(const std::string &error_type) const
Definition: MooseBase.C:43
const MooseBase & _moose_base
The MooseBase class deriving from this interface.
void mooseDeprecatedStream(S &oss, const bool expired, const bool print_title, Args &&... args)
Definition: MooseError.h:239
const ConsoleStream _console
An instance of helper class to write streams to the Console objects.

◆ mooseDocumentedError()

template<typename... Args>
void MooseBaseErrorInterface::mooseDocumentedError ( const std::string &  repo_name,
const unsigned int  issue_num,
Args &&...  args 
) const
inlineinherited

Emits a documented error with object name and type.

Documented errors are errors that have an issue associated with them.

The repository name repo_name links a named repository to a URL and should be registered at the application level with registerRepository(). See Moose.C for an example of the "moose" repository registration.

Parameters
repo_nameThe repository name where the issue resides
issue_numThe number of the issue
argsThe error message to be combined

Definition at line 61 of file MooseBaseErrorInterface.h.

Referenced by ArrayDGLowerDKernel::ArrayDGLowerDKernel(), ArrayHFEMDirichletBC::ArrayHFEMDirichletBC(), ArrayLowerDIntegratedBC::ArrayLowerDIntegratedBC(), DGLowerDKernel::DGLowerDKernel(), HFEMDirichletBC::HFEMDirichletBC(), and LowerDIntegratedBC::LowerDIntegratedBC().

64  {
65  std::ostringstream oss;
66  moose::internal::mooseStreamAll(oss, std::forward<Args>(args)...);
67  const auto msg = moose::internal::formatMooseDocumentedError(repo_name, issue_num, oss.str());
68  _moose_base.callMooseError(msg, /* with_prefix = */ true);
69  }
void mooseStreamAll(std::ostringstream &ss)
All of the following are not meant to be called directly - they are called by the normal macros (moos...
Definition: MooseError.C:94
const MooseBase & _moose_base
The MooseBase class deriving from this interface.
void callMooseError(std::string msg, const bool with_prefix) const
Calls moose error with the message msg.
Definition: MooseBase.C:33
std::string formatMooseDocumentedError(const std::string &repo_name, const unsigned int issue_num, const std::string &msg)
Formats a documented error.
Definition: MooseError.C:99

◆ mooseError()

template<typename... Args>
void MooseBaseErrorInterface::mooseError ( Args &&...  args) const
inlineinherited

Emits an error prefixed with object name and type.

Definition at line 29 of file MooseBaseErrorInterface.h.

Referenced by CopyMeshPartitioner::_do_partition(), HierarchicalGridPartitioner::_do_partition(), GridPartitioner::_do_partition(), PetscExternalPartitioner::_do_partition(), MultiAppGeneralFieldTransfer::acceptPointInOriginMesh(), CheckIntegrityAction::act(), AddMeshGeneratorAction::act(), AddVectorPostprocessorAction::act(), AutoCheckpointAction::act(), CreateExecutionerAction::act(), InitProblemAction::act(), CheckFVBCAction::act(), SetupMeshCompleteAction::act(), AddBoundsVectorsAction::act(), AddFVICAction::act(), AddICAction::act(), CreateProblemDefaultAction::act(), CreateProblemAction::act(), CombineComponentsMeshes::act(), SetupMeshAction::act(), SplitMeshAction::act(), AdaptivityAction::act(), ChainControlSetupAction::act(), DeprecatedBlockAction::act(), SetupPredictorAction::act(), SetupTimeStepperAction::act(), AddTimeStepperAction::act(), CreateDisplacedProblemAction::act(), MaterialDerivativeTestAction::act(), SetAdaptivityOptionsAction::act(), MaterialOutputAction::act(), AddMFEMSubMeshAction::act(), CommonOutputAction::act(), AddPeriodicBCAction::act(), Action::Action(), FEProblemBase::adaptMesh(), ADConservativeAdvectionBC::ADConservativeAdvectionBC(), MooseVariableFV< Real >::adCurlSln(), MooseVariableFV< Real >::adCurlSlnNeighbor(), AddActionComponentAction::AddActionComponentAction(), MFEMProblem::addBoundaryCondition(), FEProblemBase::addBoundaryCondition(), DiffusionCG::addBoundaryConditionsFromComponents(), PhysicsComponentInterface::addBoundaryConditionsFromComponents(), FEProblemBase::addConstraint(), FEProblemBase::addDamper(), FEProblemBase::addDGKernel(), FEProblemBase::addDiracKernel(), DistributedRectilinearMeshGenerator::addElement(), FEProblemBase::addFunction(), SubProblem::addFunctor(), FEProblemBase::addFVInitialCondition(), ADDGKernel::ADDGKernel(), FEProblemBase::addHDGKernel(), FEProblemBase::addInitialCondition(), PhysicsComponentInterface::addInitialConditionsFromComponents(), FEProblemBase::addInterfaceKernel(), MFEMProblem::addKernel(), FEProblemBase::addKernel(), FEProblem::addLineSearch(), FEProblemBase::addLineSearch(), MFEMProblem::addMaterial(), MeshGenerator::addMeshSubgenerator(), MFEMProblem::addMFEMFESpaceFromMOOSEVariable(), FEProblemBase::addOutput(), SubProblem::addPiecewiseByBlockLambdaFunctor(), DiracKernelBase::addPoint(), DistributedRectilinearMeshGenerator::addPoint(), DiracKernelBase::addPointWithValidId(), FEProblemBase::addPostprocessor(), FEProblemBase::addPredictor(), CreateDisplacedProblemAction::addProxyRelationshipManagers(), addQuadratureNode(), Action::addRelationshipManager(), FEProblemBase::addReporter(), FEProblemBase::addScalarKernel(), AddVariableAction::addVariable(), FEProblemBase::addVectorPostprocessor(), SubProblem::addVectorTag(), MooseLinearVariableFV< Real >::adError(), ADInterfaceKernelTempl< T >::ADInterfaceKernelTempl(), ADPiecewiseLinearInterpolationMaterial::ADPiecewiseLinearInterpolationMaterial(), MooseVariableScalar::adUDot(), Output::advancedExecuteOn(), AdvectiveFluxAux::AdvectiveFluxAux(), MooseVariableBase::allDofIndices(), NEML2ModelExecutor::applyPredictor(), MultiApp::appPostprocessorValue(), MultiApp::appProblem(), MultiApp::appProblemBase(), MultiApp::appUserObjectBase(), ArrayConstantIC::ArrayConstantIC(), ArrayDGKernel::ArrayDGKernel(), ArrayDiffusion::ArrayDiffusion(), ArrayFunctionIC::ArrayFunctionIC(), ArrayReaction::ArrayReaction(), ArrayTimeDerivative::ArrayTimeDerivative(), AddPeriodicBCAction::autoTranslationBoundaries(), AuxKernelTempl< Real >::AuxKernelTempl(), Function::average(), Axisymmetric2D3DSolutionFunction::Axisymmetric2D3DSolutionFunction(), BatchMeshGeneratorAction::BatchMeshGeneratorAction(), BicubicSplineFunction::BicubicSplineFunction(), BlockDeletionGenerator::BlockDeletionGenerator(), BoundingValueElementDamper::BoundingValueElementDamper(), BoundingValueNodalDamper::BoundingValueNodalDamper(), BreakMeshByBlockGeneratorBase::BreakMeshByBlockGeneratorBase(), buildCoarseningMap(), MultiApp::buildComm(), DistributedRectilinearMeshGenerator::buildCube(), TimedSubdomainModifier::buildFromFile(), PiecewiseTabularBase::buildFromFile(), PiecewiseTabularBase::buildFromJSON(), TimedSubdomainModifier::buildFromParameters(), PiecewiseTabularBase::buildFromXY(), PiecewiseLinearBase::buildInterpolation(), buildLowerDMesh(), TiledMesh::buildMesh(), GeneratedMesh::buildMesh(), SpiralAnnularMesh::buildMesh(), MeshGeneratorMesh::buildMesh(), ImageMeshGenerator::buildMesh3D(), ImageMesh::buildMesh3D(), buildRefinementMap(), MaterialBase::buildRequiredMaterials(), buildSideList(), buildTypedMesh(), cacheFaceInfoVariableOwnership(), CartesianGridDivision::CartesianGridDivision(), CartesianMeshGenerator::CartesianMeshGenerator(), ChangeOverFixedPointPostprocessor::ChangeOverFixedPointPostprocessor(), ChangeOverTimePostprocessor::ChangeOverTimePostprocessor(), EigenExecutionerBase::chebyshev(), SubProblem::checkBlockMatProps(), PhysicsBase::checkBlockRestrictionIdentical(), ComponentBoundaryConditionInterface::checkBoundaryConditionsAllRequested(), SubProblem::checkBoundaryMatProps(), PhysicsBase::checkComponentType(), IterationCountConvergence::checkConvergence(), checkCoordinateSystems(), DiffusionLHDGAssemblyHelper::checkCoupling(), FEProblemBase::checkDependMaterialsHelper(), FEProblemBase::checkDisplacementOrders(), FEProblemBase::checkDuplicatePostprocessorVariableNames(), DefaultNonlinearConvergence::checkDuplicateSetSharedExecutionerParams(), checkDuplicateSubdomainNames(), FEProblemBase::checkExceptionAndStopSolve(), NEML2ModelExecutor::checkExecutionStage(), MaterialBase::checkExecutionStage(), MeshGenerator::checkGetMesh(), ReporterTransferInterface::checkHasReporterValue(), FEProblemBase::checkICRestartError(), Steady::checkIntegrity(), EigenExecutionerBase::checkIntegrity(), Eigenvalue::checkIntegrity(), ExplicitTimeIntegrator::checkLinearConvergence(), MeshDiagnosticsGenerator::checkNonConformalMeshFromAdaptivity(), MeshDiagnosticsGenerator::checkNonMatchingEdges(), PostprocessorInterface::checkParam(), FEProblemBase::checkProblemIntegrity(), Sampler::checkReinitStatus(), MultiAppGeneralFieldNearestLocationTransfer::checkRestrictionsForSource(), MultiAppPostprocessorToAuxScalarTransfer::checkSiblingsTransferSupported(), MultiAppScalarToAuxScalarTransfer::checkSiblingsTransferSupported(), MultiAppPostprocessorTransfer::checkSiblingsTransferSupported(), MultiAppReporterTransfer::checkSiblingsTransferSupported(), MultiAppMFEMCopyTransfer::checkSiblingsTransferSupported(), MultiAppCopyTransfer::checkSiblingsTransferSupported(), MultiAppTransfer::checkSiblingsTransferSupported(), MaterialBase::checkStatefulSanity(), AddDefaultConvergenceAction::checkUnusedNonlinearConvergenceParameters(), FEProblemBase::checkUserObjects(), Moose::PetscSupport::checkUserProvidedPetscOption(), DomainUserObject::checkVariable(), MultiAppTransfer::checkVariable(), MeshDiagnosticsGenerator::checkWatertightNodesets(), MeshDiagnosticsGenerator::checkWatertightSidesets(), LibmeshPartitioner::clone(), clone(), CombinerGenerator::CombinerGenerator(), ComparisonPostprocessor::comparisonIsTrue(), MooseVariableFieldBase::componentName(), CompositeFunction::CompositeFunction(), ElementH1ErrorFunctionAux::compute(), NodalPatchRecovery::compute(), FEProblemBase::computeBounds(), VariableCondensationPreconditioner::computeDInverseDiag(), CompositionDT::computeDT(), ArrayDGKernel::computeElemNeighJacobian(), ArrayDGKernel::computeElemNeighResidual(), InternalSideIntegralPostprocessor::computeFaceInfoIntegral(), SideIntegralPostprocessor::computeFaceInfoIntegral(), MooseVariableFieldBase::computeFaceValues(), TimeSequenceStepperBase::computeFailedDT(), IterationAdaptiveDT::computeFailedDT(), TimeStepper::computeFailedDT(), computeFiniteVolumeCoords(), HistogramVectorPostprocessor::computeHistogram(), ArrayKernel::computeJacobian(), ArrayIntegratedBC::computeJacobian(), FVFluxKernel::computeJacobian(), NodalConstraint::computeJacobian(), FEProblemBase::computeJacobianTags(), LowerDIntegratedBC::computeLowerDOffDiagJacobian(), ArrayLowerDIntegratedBC::computeLowerDOffDiagJacobian(), EigenProblem::computeMatricesTags(), ArrayDGKernel::computeOffDiagElemNeighJacobian(), ArrayKernel::computeOffDiagJacobian(), ArrayIntegratedBC::computeOffDiagJacobian(), FVElementalKernel::computeOffDiagJacobian(), MortarScalarBase::computeOffDiagJacobianScalar(), DGLowerDKernel::computeOffDiagLowerDJacobian(), ArrayDGLowerDKernel::computeOffDiagLowerDJacobian(), MaterialBase::computeProperties(), SideFVFluxBCIntegral::computeQpIntegral(), ScalarKernel::computeQpJacobian(), CoupledTiedValueConstraint::computeQpJacobian(), TiedValueConstraint::computeQpJacobian(), NodalEqualValueConstraint::computeQpJacobian(), LinearNodalConstraint::computeQpJacobian(), EqualValueBoundaryConstraint::computeQpJacobian(), NodeElemConstraint::computeQpJacobian(), CoupledTiedValueConstraint::computeQpOffDiagJacobian(), ScalarKernel::computeQpResidual(), MassMatrix::computeQpResidual(), HDGKernel::computeQpResidual(), DiffusionLHDGDirichletBC::computeQpResidual(), NodalEqualValueConstraint::computeQpResidual(), DiffusionLHDGPrescribedGradientBC::computeQpResidual(), IPHDGBC::computeQpResidual(), KernelValue::computeQpResidual(), TorchScriptMaterial::computeQpValues(), InterfaceQpValueUserObject::computeRealValue(), ArrayKernel::computeResidual(), ArrayIntegratedBC::computeResidual(), FVFluxBC::computeResidual(), FVFluxKernel::computeResidual(), NodalConstraint::computeResidual(), FVFluxKernel::computeResidualAndJacobian(), ResidualObject::computeResidualAndJacobian(), FEProblemBase::computeResidualAndJacobian(), HDGKernel::computeResidualAndJacobianOnSide(), FEProblemBase::computeResidualInternal(), FEProblemBase::computeResidualTag(), FEProblemBase::computeResidualTags(), FEProblemBase::computeResidualType(), KernelScalarBase::computeScalarOffDiagJacobian(), ADKernelScalarBase::computeScalarQpResidual(), ADMortarScalarBase::computeScalarQpResidual(), MortarScalarBase::computeScalarQpResidual(), KernelScalarBase::computeScalarQpResidual(), TimeStepper::computeStep(), ActuallyExplicitEuler::computeTimeDerivatives(), ExplicitEuler::computeTimeDerivatives(), ImplicitEuler::computeTimeDerivatives(), BDF2::computeTimeDerivatives(), NewmarkBeta::computeTimeDerivatives(), CentralDifference::computeTimeDerivatives(), CrankNicolson::computeTimeDerivatives(), LStableDirk2::computeTimeDerivatives(), LStableDirk3::computeTimeDerivatives(), ImplicitMidpoint::computeTimeDerivatives(), ExplicitTVDRK2::computeTimeDerivatives(), LStableDirk4::computeTimeDerivatives(), AStableDirk4::computeTimeDerivatives(), ExplicitRK2::computeTimeDerivatives(), MultiAppGeometricInterpolationTransfer::computeTransformation(), BuildArrayVariableAux::computeValue(), TagVectorArrayVariableAux::computeValue(), NearestNodeValueAux::computeValue(), ProjectionAux::computeValue(), PenetrationAux::computeValue(), ConcentricCircleMesh::ConcentricCircleMesh(), ConditionalEnableControl::ConditionalEnableControl(), TimeStepper::constrainStep(), LibtorchNeuralNetControl::controlNeuralNet(), ParsedConvergence::convertRealToBool(), CopyMeshPartitioner::CopyMeshPartitioner(), CoupledForceNodalKernel::CoupledForceNodalKernel(), MultiApp::createApp(), AddVariableAction::createInitialConditionAction(), Function::curl(), MooseVariableFV< Real >::curlPhi(), CutMeshByPlaneGenerator::CutMeshByPlaneGenerator(), SidesetInfoVectorPostprocessor::dataHelper(), DebugResidualAux::DebugResidualAux(), ReporterTransferInterface::declareClone(), MeshGenerator::declareMeshProperty(), ReporterTransferInterface::declareVectorClone(), FunctorRelationshipManager::delete_remote_elements(), deleteRemoteElements(), BicubicSplineFunction::derivative(), DerivativeSumMaterialTempl< is_ad >::DerivativeSumMaterialTempl(), detectPairedSidesets(), FEProblemBase::determineSolverSystem(), DGKernel::DGKernel(), MeshDiagnosticsGenerator::diagnosticsLog(), DistributedPositions::DistributedPositions(), Function::div(), FunctorBinnedValuesDivision::divisionIndex(), MooseVariableFV< Real >::divPhi(), FunctorRelationshipManager::dofmap_reinit(), EigenProblem::doFreeNonlinearPowerIterations(), FEProblemBase::duplicateVariableCheck(), EigenProblem::EigenProblem(), Eigenvalue::Eigenvalue(), Eigenvalues::Eigenvalues(), ElementalVariableValue::ElementalVariableValue(), ElementGroupCentroidPositions::ElementGroupCentroidPositions(), ElementIntegerAux::ElementIntegerAux(), ElementMaterialSampler::ElementMaterialSampler(), ElementQualityAux::ElementQualityAux(), ElementSubdomainModifierBase::ElementSubdomainModifierBase(), ElementUOAux::ElementUOAux(), DistributedRectilinearMeshGenerator::elemId(), ProjectionAux::elemOnNodeVariableIsDefinedOn(), EigenKernel::enabled(), errorIfDistributedMesh(), MultiAppTransfer::errorIfObjectExecutesOnTransferInSourceApp(), SideIntegralPostprocessor::errorNoFaceInfo(), SideIntegralFunctorPostprocessorTempl< false >::errorNoFaceInfo(), SolutionUserObjectBase::evalMeshFunction(), SolutionUserObjectBase::evalMeshFunctionGradient(), SolutionUserObjectBase::evalMultiValuedMeshFunction(), SolutionUserObjectBase::evalMultiValuedMeshFunctionGradient(), MultiAppGeneralFieldTransfer::examineReceivedValueConflicts(), RealToBoolChainControl::execute(), RestartableDataReporter::execute(), DiscreteElementUserObject::execute(), MultiAppPostprocessorToAuxScalarTransfer::execute(), NodalValueSampler::execute(), MultiAppScalarToAuxScalarTransfer::execute(), MultiAppPostprocessorInterpolationTransfer::execute(), MultiAppPostprocessorTransfer::execute(), ElementQualityChecker::execute(), PositionsFunctorValueSampler::execute(), GreaterThanLessThanPostprocessor::execute(), PointValue::execute(), MultiAppVariableValueSampleTransfer::execute(), MultiAppVariableValueSamplePostprocessorTransfer::execute(), FindValueOnLine::execute(), MultiAppNearestNodeTransfer::execute(), MultiAppCopyTransfer::execute(), MultiAppMFEMCopyTransfer::execute(), WebServerControl::execute(), MultiAppGeometricInterpolationTransfer::execute(), MultiAppUserObjectTransfer::execute(), InterfaceQpUserObjectBase::execute(), LeastSquaresFit::execute(), VectorPostprocessorComparison::execute(), LeastSquaresFitHistory::execute(), TimeExtremeValue::execute(), Eigenvalue::execute(), DomainUserObject::execute(), FEProblemBase::execute(), FEProblemBase::executeControls(), MultiAppVectorPostprocessorTransfer::executeFromMultiapp(), MultiAppVectorPostprocessorTransfer::executeToMultiapp(), Exodus::Exodus(), ExplicitSSPRungeKutta::ExplicitSSPRungeKutta(), MultiAppGeneralFieldTransfer::extractOutgoingPoints(), NEML2ModelExecutor::extractOutputs(), ExtraIDIntegralVectorPostprocessor::ExtraIDIntegralVectorPostprocessor(), FEProblemSolve::FEProblemSolve(), FileOutput::FileOutput(), NEML2ModelExecutor::fillInputs(), QuadraturePointMultiApp::fillPositions(), CentroidMultiApp::fillPositions(), MultiApp::fillPositions(), MultiAppGeometricInterpolationTransfer::fillSourceInterpolationPoints(), VerifyElementUniqueID::finalize(), VerifyNodalUniqueID::finalize(), DiscreteElementUserObject::finalize(), ElementQualityChecker::finalize(), MemoryUsage::finalize(), PointSamplerBase::finalize(), NearestPointAverage::finalize(), NearestPointIntegralVariablePostprocessor::finalize(), Transfer::find_sys(), BreakMeshByBlockGeneratorBase::findFreeBoundaryId(), FunctionDT::FunctionDT(), FunctionMaterialBase< is_ad >::FunctionMaterialBase(), FunctionScalarAux::FunctionScalarAux(), FunctionScalarIC::FunctionScalarIC(), FunctorSmootherTempl< T >::FunctorSmootherTempl(), FVInitialConditionTempl< T >::FVInitialConditionTempl(), FVMassMatrix::FVMassMatrix(), FVMatAdvection::FVMatAdvection(), FVScalarLagrangeMultiplierInterface::FVScalarLagrangeMultiplierInterface(), GapValueAux::GapValueAux(), WorkBalance::gather(), ElementOrderConversionGenerator::generate(), BlockToMeshConverterGenerator::generate(), MoveNodeGenerator::generate(), FileMeshGenerator::generate(), LowerDBlockFromSidesetGenerator::generate(), ExtraNodesetGenerator::generate(), PlaneIDMeshGenerator::generate(), RenameBlockGenerator::generate(), RenameBoundaryGenerator::generate(), SideSetsFromNormalsGenerator::generate(), SmoothMeshGenerator::generate(), SubdomainPerElementGenerator::generate(), TiledMeshGenerator::generate(), CoarsenBlockGenerator::generate(), MeshDiagnosticsGenerator::generate(), BreakMeshByBlockGenerator::generate(), FlipSidesetGenerator::generate(), GeneratedMeshGenerator::generate(), MeshRepairGenerator::generate(), SideSetsFromPointsGenerator::generate(), CombinerGenerator::generate(), AllSideSetsByNormalsGenerator::generate(), AdvancedExtruderGenerator::generate(), MeshCollectionGenerator::generate(), MeshExtruderGenerator::generate(), ParsedGenerateNodeset::generate(), SideSetsFromBoundingBoxGenerator::generate(), StackGenerator::generate(), StitchedMeshGenerator::generate(), XYZDelaunayGenerator::generate(), CutMeshByLevelSetGeneratorBase::generate(), SpiralAnnularMeshGenerator::generate(), XYDelaunayGenerator::generate(), XYMeshLineCutter::generate(), PatternedMeshGenerator::generate(), SubdomainBoundingBoxGenerator::generate(), DistributedRectilinearMeshGenerator::generate(), BoundingBoxNodeSetGenerator::generate(), MeshGenerator::generateData(), GeneratedMesh::GeneratedMesh(), GeneratedMeshGenerator::GeneratedMeshGenerator(), MeshGenerator::generateInternal(), CircularBoundaryCorrectionGenerator::generateRadialCorrectionFactor(), RandomICBase::generateRandom(), GenericConstantMaterialTempl< is_ad >::GenericConstantMaterialTempl(), GenericConstantVectorMaterialTempl< is_ad >::GenericConstantVectorMaterialTempl(), GenericFunctionMaterialTempl< is_ad >::GenericFunctionMaterialTempl(), GenericFunctionVectorMaterialTempl< is_ad >::GenericFunctionVectorMaterialTempl(), GenericFunctorGradientMaterialTempl< is_ad >::GenericFunctorGradientMaterialTempl(), GenericFunctorMaterialTempl< is_ad >::GenericFunctorMaterialTempl(), GenericFunctorTimeDerivativeMaterialTempl< is_ad >::GenericFunctorTimeDerivativeMaterialTempl(), GenericVectorFunctorMaterialTempl< is_ad >::GenericVectorFunctorMaterialTempl(), DisplacedProblem::getActualFieldVariable(), FEProblemBase::getActualFieldVariable(), DisplacedProblem::getArrayVariable(), FEProblemBase::getArrayVariable(), getAxisymmetricRadialCoord(), NEML2BatchIndexGenerator::getBatchIndex(), getBlockConnectedBlocks(), VariableOldValueBounds::getBound(), getBoundaryID(), MultiApp::getBoundingBox(), ChainControl::getChainControlDataByName(), getCoarseningMap(), MultiApp::getCommandLineArgs(), MooseVariableBase::getContinuity(), Control::getControllableParameterByName(), FEProblemBase::getConvergence(), getCoordSystem(), PhysicsBase::getCoupledPhysics(), PropertyReadFile::getData(), DataFileInterface::getDataFilePath(), TransfiniteMeshGenerator::getDiscreteEdge(), FEProblemBase::getDistribution(), MooseVariableBase::getDofIndices(), VariableCondensationPreconditioner::getDofToCondense(), TransfiniteMeshGenerator::getEdge(), GhostingUserObject::getElementalValue(), ElementUOProvider::getElementalValueLong(), ElementUOProvider::getElementalValueReal(), PropertyReadFile::getElementData(), getElementIDIndex(), Material::getElementIDNeighbor(), Material::getElementIDNeighborByName(), getElemIDMapping(), getElemIDsOnBlocks(), MultiAppFieldTransfer::getEquationSystem(), MultiApp::getExecutioner(), MFEMVectorFESpace::getFECName(), MultiAppTransfer::getFromMultiApp(), MultiAppTransfer::getFromMultiAppInfo(), FEProblemBase::getFunction(), SubProblem::getFunctor(), FEProblemBase::getFVMatsAndDependencies(), getGeneralAxisymmetricCoordAxis(), DistributedRectilinearMeshGenerator::getGhostNeighbors(), DistributedRectilinearMeshGenerator::getIndices(), FEProblemBase::getLinearConvergenceNames(), SolutionUserObjectBase::getLocalVarIndex(), Material::getMaterialByName(), FEProblemBase::getMaterialData(), SubProblem::getMatrixTagID(), GeneratedMesh::getMaxInDimension(), AnnularMesh::getMaxInDimension(), FEProblemBase::getMaxQps(), FEProblemBase::getMeshDivision(), MeshGenerator::getMeshGeneratorNameFromParam(), MeshGenerator::getMeshGeneratorNamesFromParam(), AnnularMesh::getMinInDimension(), GeneratedMesh::getMinInDimension(), MultiAppTransfer::getMultiApp(), DistributedRectilinearMeshGenerator::getNeighbors(), Times::getNextTime(), getNodeBlockIds(), PropertyReadFile::getNodeData(), getNodeList(), FEProblemBase::getNonlinearConvergenceNames(), EigenProblem::getNonlinearEigenSystem(), FEProblemBase::getNonlinearSystem(), NEML2ModelExecutor::getOutput(), NEML2ModelExecutor::getOutputDerivative(), NEML2ModelExecutor::getOutputParameterDerivative(), getPairedBoundaryMapping(), MaterialOutputAction::getParams(), ImageMeshGenerator::GetPixelInfo(), ImageMesh::GetPixelInfo(), PlaneIDMeshGenerator::getPlaneID(), Positions::getPosition(), Positions::getPositions(), FEProblemBase::getPositionsObject(), Positions::getPositionsVector2D(), Positions::getPositionsVector3D(), Positions::getPositionsVector4D(), PostprocessorInterface::getPostprocessorValueByNameInternal(), Times::getPreviousTime(), ComponentMaterialPropertyInterface::getPropertyValue(), InterfaceQpUserObjectBase::getQpValue(), getRefinementMap(), ReporterInterface::getReporterName(), Reporter::getReporterValueName(), FEProblemBase::getSampler(), WebServerControl::getScalarJSONValue(), DisplacedProblem::getScalarVariable(), FEProblemBase::getScalarVariable(), MooseObject::getSharedPtr(), InterfaceQpUserObjectBase::getSideAverageValue(), PhysicsBase::getSolverSystem(), DisplacedProblem::getStandardVariable(), FEProblemBase::getStandardVariable(), getSubdomainBoundaryIds(), TimedSubdomainModifier::getSubdomainIDAndCheck(), DisplacedProblem::getSystem(), FEProblemBase::getSystem(), Times::getTimeAtIndex(), FEProblemBase::getTimeFromStateArg(), TransientBase::getTimeIntegratorNames(), Times::getTimes(), MultiAppTransfer::getToMultiApp(), MultiAppTransfer::getToMultiAppInfo(), getUniqueCoordSystem(), FEProblemBase::getUserObject(), FEProblemBase::getUserObjectBase(), UserObjectInterface::getUserObjectBaseByName(), UserObjectInterface::getUserObjectName(), NumRelationshipManagers::getValue(), VectorPostprocessorComponent::getValue(), Residual::getValue(), SideAverageValue::getValue(), JSONFileReader::getValue(), LineValueSampler::getValue(), FindValueOnLine::getValueAtPoint(), SubProblem::getVariableHelper(), JSONFileReader::getVector(), VectorPostprocessorInterface::getVectorPostprocessorName(), SubProblem::getVectorTag(), SubProblem::getVectorTagID(), DisplacedProblem::getVectorVariable(), FEProblemBase::getVectorVariable(), GhostingFromUOAux::GhostingFromUOAux(), MultiApp::globalAppToLocal(), MooseParsedVectorFunction::gradient(), Function::gradient(), FEProblemBase::handleException(), Terminator::handleMessage(), MooseVariableBase::hasDoFsOnNodes(), PostprocessorInterface::hasPostprocessor(), PostprocessorInterface::hasPostprocessorByName(), ReporterInterface::hasReporterValue(), ReporterInterface::hasReporterValueByName(), VectorPostprocessorInterface::hasVectorPostprocessor(), VectorPostprocessorInterface::hasVectorPostprocessorByName(), HDGKernel::HDGKernel(), TransientBase::incrementStepOrReject(), FixedPointIterationAdaptiveDT::init(), CrankNicolson::init(), CSVTimeSequenceStepper::init(), ExplicitTimeIntegrator::init(), EigenExecutionerBase::init(), TransientBase::init(), FEProblem::init(), AddAuxVariableAction::init(), IterationAdaptiveDT::init(), Eigenvalue::init(), AddVariableAction::init(), init(), Sampler::init(), FEProblemBase::init(), MultiApp::init(), FEProblemBase::initialAdaptMesh(), NestedDivision::initialize(), ReporterPositions::initialize(), DistributedPositions::initialize(), TransformedPositions::initialize(), ElementGroupCentroidPositions::initialize(), ReporterTimes::initialize(), FunctorPositions::initialize(), FunctorTimes::initialize(), ParsedDownSelectionPositions::initialize(), ParsedConvergence::initializeConstantSymbol(), PhysicsBase::initializePhysics(), MultiAppCloneReporterTransfer::initialSetup(), SolutionIC::initialSetup(), PiecewiseLinearBase::initialSetup(), ChainControlDataPostprocessor::initialSetup(), IntegralPreservingFunctionIC::initialSetup(), MultiAppConservativeTransfer::initialSetup(), FullSolveMultiApp::initialSetup(), PiecewiseLinear::initialSetup(), CoarsenedPiecewiseLinear::initialSetup(), SolutionScalarAux::initialSetup(), MultiAppGeneralFieldNearestLocationTransfer::initialSetup(), LinearFVAdvection::initialSetup(), LinearFVDiffusion::initialSetup(), MultiAppDofCopyTransfer::initialSetup(), LinearFVAnisotropicDiffusion::initialSetup(), SolutionAux::initialSetup(), ExplicitTimeIntegrator::initialSetup(), ReferenceResidualConvergence::initialSetup(), NodalVariableValue::initialSetup(), Axisymmetric2D3DSolutionFunction::initialSetup(), Exodus::initialSetup(), CSV::initialSetup(), MooseParsedFunction::initialSetup(), SolutionUserObjectBase::initialSetup(), FEProblemBase::initialSetup(), SubProblem::initialSetup(), AdvancedOutput::initOutputList(), MFEMProblem::initProblemOperator(), AdvancedOutput::initShowHideLists(), Function::integral(), InterfaceDiffusiveFluxIntegralTempl< is_ad >::InterfaceDiffusiveFluxIntegralTempl(), InterfaceIntegralVariableValuePostprocessor::InterfaceIntegralVariableValuePostprocessor(), InterfaceKernelTempl< T >::InterfaceKernelTempl(), InterfaceTimeKernel::InterfaceTimeKernel(), InternalSideIndicatorBase::InternalSideIndicatorBase(), MultiAppGeometricInterpolationTransfer::interpolateTargetPoints(), EigenExecutionerBase::inversePowerIteration(), InversePowerMethod::InversePowerMethod(), Sampler::isAdaptiveSamplingCompleted(), isBoundaryFullyExternalToSubdomains(), MooseVariableBase::isNodal(), IterationAdaptiveDT::IterationAdaptiveDT(), IterationCountConvergence::IterationCountConvergence(), LeastSquaresFit::LeastSquaresFit(), LibmeshPartitioner::LibmeshPartitioner(), LibtorchNeuralNetControl::LibtorchNeuralNetControl(), LinearCombinationPostprocessor::LinearCombinationPostprocessor(), LinearNodalConstraint::LinearNodalConstraint(), LineMaterialSamplerBase< Real >::LineMaterialSamplerBase(), LineSearch::lineSearch(), LineValueSampler::LineValueSampler(), MultiAppGeneralFieldTransfer::locatePointReceivers(), LowerBoundNodalKernel::LowerBoundNodalKernel(), MooseLinearVariableFV< Real >::lowerDError(), PNGOutput::makePNG(), ReporterPointMarker::markerSetup(), SubProblem::markFamilyPRefinement(), MassMatrix::MassMatrix(), Material::Material(), MaterialRealTensorValueAuxTempl< is_ad >::MaterialRealTensorValueAuxTempl(), MaterialRealVectorValueAuxTempl< T, is_ad, is_functor >::MaterialRealVectorValueAuxTempl(), MaterialStdVectorRealGradientAux::MaterialStdVectorRealGradientAux(), Distribution::median(), FunctorRelationshipManager::mesh_reinit(), MeshDiagnosticsGenerator::MeshDiagnosticsGenerator(), MeshExtruderGenerator::MeshExtruderGenerator(), MeshRepairGenerator::MeshRepairGenerator(), SetupMeshAction::modifyParamsForUseSplit(), MeshMetaDataInterface::mooseErrorInternal(), MooseLinearVariableFV< Real >::MooseLinearVariableFV(), MooseMesh(), MooseObject::MooseObject(), UserObjectInterface::mooseObjectError(), MooseStaticCondensationPreconditioner::MooseStaticCondensationPreconditioner(), MooseVariableBase::MooseVariableBase(), MooseVariableConstMonomial::MooseVariableConstMonomial(), MoveNodeGenerator::MoveNodeGenerator(), MultiApp::MultiApp(), MultiAppMFEMCopyTransfer::MultiAppMFEMCopyTransfer(), MultiAppPostprocessorTransfer::MultiAppPostprocessorTransfer(), MultiAppTransfer::MultiAppTransfer(), MultiAppUserObjectTransfer::MultiAppUserObjectTransfer(), MultiAppVariableValueSamplePostprocessorTransfer::MultiAppVariableValueSamplePostprocessorTransfer(), NearestNodeDistanceAux::NearestNodeDistanceAux(), NearestNodeValueAux::NearestNodeValueAux(), FEProblemBase::needsPreviousNewtonIteration(), NewmarkBeta::NewmarkBeta(), NodalConstraint::NodalConstraint(), MooseVariableFV< Real >::nodalDofIndex(), MooseVariableFV< Real >::nodalDofIndexNeighbor(), MooseLinearVariableFV< Real >::nodalError(), MooseVariableFV< Real >::nodalMatrixTagValue(), NodalPatchRecoveryBase::nodalPatchRecovery(), NodalPatchRecoveryAuxBase::NodalPatchRecoveryAuxBase(), NodalScalarKernel::NodalScalarKernel(), MooseVariableFV< Real >::nodalValueArray(), MooseVariableFV< Real >::nodalValueOldArray(), MooseVariableFV< Real >::nodalValueOlderArray(), NodalVariableValue::NodalVariableValue(), MooseVariableFV< Real >::nodalVectorTagValue(), DistributedRectilinearMeshGenerator::nodeId(), MooseVariableFV< Real >::numberOfDofsNeighbor(), NumDOFs::NumDOFs(), NumFailedTimeSteps::NumFailedTimeSteps(), DistributedRectilinearMeshGenerator::numNeighbors(), NumNonlinearIterations::NumNonlinearIterations(), NumVars::NumVars(), Output::onInterval(), FunctorRelationshipManager::operator()(), RelationshipManager::operator==(), ActionComponent::outerSurfaceArea(), ActionComponent::outerSurfaceBoundaries(), XDA::output(), SolutionHistory::output(), Exodus::output(), Output::Output(), AdvancedOutput::outputElementalVariables(), AdvancedOutput::outputInput(), AdvancedOutput::outputNodalVariables(), AdvancedOutput::outputPostprocessors(), AdvancedOutput::outputReporters(), AdvancedOutput::outputScalarVariables(), Exodus::outputSetup(), AdvancedOutput::outputSystemInformation(), Console::outputVectorPostprocessors(), AdvancedOutput::outputVectorPostprocessors(), DistributedRectilinearMeshGenerator::paritionSquarely(), PiecewiseBilinear::parse(), ParsedConvergence::ParsedConvergence(), ParsedCurveGenerator::ParsedCurveGenerator(), ParsedODEKernel::ParsedODEKernel(), MultiAppConservativeTransfer::performAdjustment(), ExplicitTimeIntegrator::performExplicitSolve(), PetscExternalPartitioner::PetscExternalPartitioner(), MooseVariableFV< Real >::phiLowerSize(), PhysicsBasedPreconditioner::PhysicsBasedPreconditioner(), PIDTransientControl::PIDTransientControl(), PiecewiseBilinear::PiecewiseBilinear(), PiecewiseLinearInterpolationMaterial::PiecewiseLinearInterpolationMaterial(), PiecewiseMulticonstant::PiecewiseMulticonstant(), PiecewiseMultiInterpolation::PiecewiseMultiInterpolation(), PiecewiseTabularBase::PiecewiseTabularBase(), CutMeshByLevelSetGeneratorBase::pointPairLevelSetInterception(), SolutionUserObjectBase::pointValueGradientWrapper(), SolutionUserObjectBase::pointValueWrapper(), ReporterInterface::possiblyCheckHasReporter(), VectorPostprocessorInterface::possiblyCheckHasVectorPostprocessorByName(), LStableDirk2::postResidual(), LStableDirk3::postResidual(), ImplicitMidpoint::postResidual(), ExplicitTVDRK2::postResidual(), LStableDirk4::postResidual(), AStableDirk4::postResidual(), ExplicitRK2::postResidual(), EigenProblem::postScaleEigenVector(), VariableCondensationPreconditioner::preallocateCondensedJacobian(), ADKernelValueTempl< T >::precomputeQpJacobian(), Predictor::Predictor(), TransientBase::preExecute(), prepare(), prepared(), FixedPointSolve::printFixedPointConvergenceReason(), PseudoTimestep::PseudoTimestep(), MultiApp::readCommandLineArguments(), PropertyReadFile::readData(), SolutionUserObjectBase::readExodusII(), SolutionUserObjectBase::readXda(), CoarsenBlockGenerator::recursiveCoarsen(), FunctorRelationshipManager::redistribute(), ReferenceResidualConvergence::ReferenceResidualConvergence(), Sampler::reinit(), RelativeSolutionDifferenceNorm::RelativeSolutionDifferenceNorm(), PhysicsBase::reportPotentiallyMissedParameters(), RinglebMesh::RinglebMesh(), RinglebMeshGenerator::RinglebMeshGenerator(), PiecewiseMultiInterpolation::sample(), ScalarComponentIC::ScalarComponentIC(), MortarScalarBase::scalarVariable(), DistributedRectilinearMeshGenerator::scaleNodalPositions(), BicubicSplineFunction::secondDerivative(), MooseVariableFV< Real >::secondPhi(), MooseVariableFV< Real >::secondPhiFace(), MooseVariableFV< Real >::secondPhiFaceNeighbor(), MooseVariableFV< Real >::secondPhiNeighbor(), FunctorRelationshipManager::set_mesh(), MooseVariableBase::setActiveTags(), DistributedRectilinearMeshGenerator::setBoundaryNames(), setCoordSystem(), FEProblemBase::setCoupling(), PiecewiseBase::setData(), FileOutput::setFileBaseInternal(), setGeneralAxisymmetricCoordAxes(), FEProblemSolve::setInnerSolve(), MeshGenerator::setMeshProperty(), FVPointValueConstraint::setMyElem(), FEProblemBase::setNonlocalCouplingMatrix(), Sampler::setNumberOfCols(), Sampler::setNumberOfRandomSeeds(), Sampler::setNumberOfRows(), Exodus::setOutputDimensionInExodusWriter(), AddPeriodicBCAction::setPeriodicVars(), MFEMSolverBase::setPreconditioner(), MultiAppGeneralFieldTransfer::setSolutionVectorValues(), Split::setup(), TransientMultiApp::setupApp(), SetupMeshAction::setupMesh(), TimeSequenceStepperBase::setupSequence(), TransientBase::setupTimeIntegrator(), TimePeriodBase::setupTimes(), IntegratedBCBase::shouldApply(), PhysicsBase::shouldCreateIC(), PhysicsBase::shouldCreateTimeDerivative(), PhysicsBase::shouldCreateVariable(), SideAdvectiveFluxIntegralTempl< is_ad >::SideAdvectiveFluxIntegralTempl(), SideDiffusiveFluxIntegralTempl< is_ad, Real >::SideDiffusiveFluxIntegralTempl(), SideSetsFromNormalsGenerator::SideSetsFromNormalsGenerator(), SideSetsFromPointsGenerator::SideSetsFromPointsGenerator(), SingleMatrixPreconditioner::SingleMatrixPreconditioner(), SolutionTimeAdaptiveDT::SolutionTimeAdaptiveDT(), SolutionUserObjectBase::SolutionUserObjectBase(), TimeIntegrator::solve(), FEProblemBase::solverSysNum(), FullSolveMultiApp::solveStep(), SpatialAverageBase::SpatialAverageBase(), UserObject::spatialPoints(), NearestPointIntegralVariablePostprocessor::spatialValue(), NearestPointAverage::spatialValue(), MeshDivisionFunctorReductionVectorPostprocessor::spatialValue(), UserObject::spatialValue(), SpiralAnnularMesh::SpiralAnnularMesh(), SpiralAnnularMeshGenerator::SpiralAnnularMeshGenerator(), WebServerControl::startServer(), StitchedMesh::StitchedMesh(), WebServerControl::stringifyJSONType(), MultiAppGeometricInterpolationTransfer::subdomainIDsNode(), Constraint::subdomainSetup(), NodalUserObject::subdomainSetup(), GeneralUserObject::subdomainSetup(), MaterialBase::subdomainSetup(), FEProblemBase::swapBackMaterialsNeighbor(), DisplacedProblem::systemBaseLinear(), Console::systemInfoFlags(), FEProblemBase::systemNumForVariable(), TerminateChainControl::terminate(), Terminator::Terminator(), CutMeshByLevelSetGeneratorBase::tet4ElemCutter(), ThreadedGeneralUserObject::threadJoin(), DiscreteElementUserObject::threadJoin(), GeneralUserObject::threadJoin(), Function::timeDerivative(), TimedSubdomainModifier::TimedSubdomainModifier(), TimeExtremeValue::TimeExtremeValue(), Function::timeIntegral(), MooseLinearVariableFV< Real >::timeIntegratorError(), TimeIntervalTimes::TimeIntervalTimes(), TimePeriodBase::TimePeriodBase(), VectorPostprocessorVisualizationAux::timestepSetup(), MultiAppDofCopyTransfer::transfer(), MultiAppMFEMCopyTransfer::transfer(), MultiAppShapeEvaluationTransfer::transferVariable(), TransformedPositions::TransformedPositions(), FEProblemBase::trustUserCouplingMatrix(), MooseVariableScalar::uDot(), MooseVariableScalar::uDotDot(), MooseVariableScalar::uDotDotOld(), FEProblemBase::uDotDotOldRequested(), MooseVariableScalar::uDotOld(), FEProblemBase::uDotOldRequested(), Positions::unrollMultiDPositions(), ScalarKernelBase::uOld(), AuxScalarKernel::uOld(), Checkpoint::updateCheckpointFiles(), EqualValueBoundaryConstraint::updateConstrainedNodes(), SolutionUserObjectBase::updateExodusBracketingTimeIndices(), FEProblemBase::updateMaxQps(), MFEMHypreAMS::updateSolver(), MFEMHypreADS::updateSolver(), MFEMHypreFGMRES::updateSolver(), MFEMHyprePCG::updateSolver(), MFEMCGSolver::updateSolver(), MFEMGMRESSolver::updateSolver(), MFEMHypreGMRES::updateSolver(), MFEMSuperLU::updateSolver(), UpperBoundNodalKernel::UpperBoundNodalKernel(), NearestPointAverage::userObjectValue(), NearestPointIntegralVariablePostprocessor::userObjectValue(), BoundingBoxIC::value(), PiecewiseConstantFromCSV::value(), IntegralPreservingFunctionIC::value(), Axisymmetric2D3DSolutionFunction::value(), Function::value(), ValueRangeMarker::ValueRangeMarker(), ValueThresholdMarker::ValueThresholdMarker(), VariableCondensationPreconditioner::VariableCondensationPreconditioner(), PhysicsBase::variableExists(), MultiAppTransfer::variableIntegrityCheck(), VariableTimeIntegrationAux::VariableTimeIntegrationAux(), AddVariableAction::variableType(), VariableValueVolumeHistogram::VariableValueVolumeHistogram(), VectorMagnitudeFunctorMaterialTempl< is_ad >::VectorMagnitudeFunctorMaterialTempl(), VectorNodalBC::VectorNodalBC(), SubProblem::vectorTagName(), SubProblem::vectorTagType(), MooseParsedGradFunction::vectorValue(), MooseParsedFunction::vectorValue(), Function::vectorValue(), SubProblem::verifyVectorTags(), ActionComponent::volume(), VTKOutput::VTKOutput(), WebServerControl::WebServerControl(), DOFMapOutput::writeStreamToFile(), and Console::writeStreamToFile().

30  {
31  std::ostringstream oss;
32  moose::internal::mooseStreamAll(oss, std::forward<Args>(args)...);
33  _moose_base.callMooseError(oss.str(), /* with_prefix = */ true);
34  }
void mooseStreamAll(std::ostringstream &ss)
All of the following are not meant to be called directly - they are called by the normal macros (moos...
Definition: MooseError.C:94
const MooseBase & _moose_base
The MooseBase class deriving from this interface.
void callMooseError(std::string msg, const bool with_prefix) const
Calls moose error with the message msg.
Definition: MooseBase.C:33

◆ mooseErrorNonPrefixed()

template<typename... Args>
void MooseBaseErrorInterface::mooseErrorNonPrefixed ( Args &&...  args) const
inlineinherited

Emits an error without the prefixing included in mooseError().

Definition at line 40 of file MooseBaseErrorInterface.h.

41  {
42  std::ostringstream oss;
43  moose::internal::mooseStreamAll(oss, std::forward<Args>(args)...);
44  _moose_base.callMooseError(oss.str(), /* with_prefix = */ false);
45  }
void mooseStreamAll(std::ostringstream &ss)
All of the following are not meant to be called directly - they are called by the normal macros (moos...
Definition: MooseError.C:94
const MooseBase & _moose_base
The MooseBase class deriving from this interface.
void callMooseError(std::string msg, const bool with_prefix) const
Calls moose error with the message msg.
Definition: MooseBase.C:33

◆ mooseInfo()

template<typename... Args>
void MooseBaseErrorInterface::mooseInfo ( Args &&...  args) const
inlineinherited

Definition at line 98 of file MooseBaseErrorInterface.h.

Referenced by SetupRecoverFileBaseAction::act(), AStableDirk4::AStableDirk4(), MeshDiagnosticsGenerator::checkNonConformalMeshFromAdaptivity(), MultiAppGeneralFieldNearestLocationTransfer::evaluateInterpValuesNearestNode(), PIDTransientControl::execute(), ExplicitRK2::ExplicitRK2(), ExplicitTVDRK2::ExplicitTVDRK2(), DataFileInterface::getDataFilePath(), MultiAppTransfer::getPointInTargetAppFrame(), ImplicitMidpoint::ImplicitMidpoint(), ParsedDownSelectionPositions::initialize(), PropertyReadFile::initialize(), MultiAppGeneralFieldTransfer::initialSetup(), InversePowerMethod::InversePowerMethod(), LStableDirk2::LStableDirk2(), LStableDirk3::LStableDirk3(), LStableDirk4::LStableDirk4(), PNGOutput::makeMeshFunc(), NonlinearEigen::NonlinearEigen(), SolutionInvalidityOutput::output(), MultiAppGeneralFieldTransfer::outputValueConflicts(), ProjectionAux::ProjectionAux(), ReferenceResidualConvergence::ReferenceResidualConvergence(), MFEMDataCollection::registerFields(), FEProblemBase::setRestartFile(), SolutionUserObjectBase::SolutionUserObjectBase(), and SymmetryTransformGenerator::SymmetryTransformGenerator().

99  {
101  _console, _moose_base.errorPrefix("information"), std::forward<Args>(args)...);
102  }
void mooseInfoStream(S &oss, Args &&... args)
Definition: MooseError.h:232
std::string errorPrefix(const std::string &error_type) const
Definition: MooseBase.C:43
const MooseBase & _moose_base
The MooseBase class deriving from this interface.
const ConsoleStream _console
An instance of helper class to write streams to the Console objects.

◆ mooseWarning()

template<typename... Args>
void MooseBaseErrorInterface::mooseWarning ( Args &&...  args) const
inlineinherited

Emits a warning prefixed with object name and type.

Definition at line 75 of file MooseBaseErrorInterface.h.

Referenced by CopyMeshPartitioner::_do_partition(), AddKernelAction::act(), MeshOnlyAction::act(), AddFunctionAction::act(), MaterialOutputAction::act(), CommonOutputAction::act(), MFEMProblem::addFunction(), addPeriodicVariable(), DiracKernelBase::addPoint(), BoundaryMarker::BoundaryMarker(), DistributedRectilinearMeshGenerator::buildCube(), MultiAppVariableValueSamplePostprocessorTransfer::cacheElemToPostprocessorData(), CartesianMeshGenerator::CartesianMeshGenerator(), CheckOutputAction::checkConsoleOutput(), MultiAppTransfer::checkMultiAppExecuteOn(), MeshDiagnosticsGenerator::checkNonMatchingEdges(), ActionComponent::checkRequiredTasks(), PhysicsBase::checkRequiredTasks(), SampledOutput::cloneMesh(), MultiAppGeneralFieldTransfer::closestToPosition(), VariableValueElementSubdomainModifier::computeSubdomainID(), GapValueAux::computeValue(), MultiApp::createApp(), DebugResidualAux::DebugResidualAux(), MeshDiagnosticsGenerator::diagnosticsLog(), CylindricalGridDivision::divisionIndex(), SphericalGridDivision::divisionIndex(), CartesianGridDivision::divisionIndex(), ElementMaterialSampler::ElementMaterialSampler(), Postprocessor::evaluateDotWarning(), MeshDivisionFunctorReductionVectorPostprocessor::execute(), ElementQualityChecker::finalize(), FiniteDifferencePreconditioner::FiniteDifferencePreconditioner(), FixedPointSolve::FixedPointSolve(), SubdomainPerElementGenerator::generate(), StitchedMeshGenerator::generate(), ParsedGenerateSideset::generate(), MultiAppTransfer::getAppInfo(), FunctorBinnedValuesDivision::getBinIndex(), DataFileInterface::getDataFilePath(), PointSamplerBase::getLocalElemContainingPoint(), FEProblemBase::getMaterial(), LineValueSampler::getValue(), Terminator::handleMessage(), IndicatorMarker::IndicatorMarker(), SphericalGridDivision::initialize(), CylindricalGridDivision::initialize(), ElementGroupCentroidPositions::initialize(), CartesianGridDivision::initialize(), MultiAppGeneralFieldNearestLocationTransfer::initialSetup(), BoundsBase::initialSetup(), ReferenceResidualConvergence::initialSetup(), MultiAppGeneralFieldTransfer::initialSetup(), FEProblemBase::initialSetup(), AdvancedOutput::initPostprocessorOrVectorPostprocessorLists(), MaterialBase::initStatefulProperties(), LeastSquaresFit::LeastSquaresFit(), IterationAdaptiveDT::limitDTToPostprocessorValue(), FEProblemBase::mesh(), MultiAppGeneralFieldTransfer::MultiAppGeneralFieldTransfer(), NewmarkBeta::NewmarkBeta(), NodalPatchRecovery::NodalPatchRecovery(), NonlocalIntegratedBC::NonlocalIntegratedBC(), NonlocalKernel::NonlocalKernel(), Output::Output(), MultiAppGeneralFieldTransfer::outputValueConflicts(), PiecewiseConstantFromCSV::PiecewiseConstantFromCSV(), Executioner::problem(), PropertyReadFile::readData(), TestSourceStepper::rejectStep(), PhysicsBase::reportPotentiallyMissedParameters(), MaterialBase::resetQpProperties(), SecondTimeDerivativeAux::SecondTimeDerivativeAux(), setCoordSystem(), SidesetAroundSubdomainUpdater::SidesetAroundSubdomainUpdater(), FEProblemBase::sizeZeroes(), TransientMultiApp::solveStep(), Tecplot::Tecplot(), TimeDerivativeAux::TimeDerivativeAux(), Checkpoint::updateCheckpointFiles(), SampledOutput::updateSample(), PiecewiseConstantFromCSV::value(), and VariableCondensationPreconditioner::VariableCondensationPreconditioner().

76  {
78  _console, _moose_base.errorPrefix("warning"), std::forward<Args>(args)...);
79  }
std::string errorPrefix(const std::string &error_type) const
Definition: MooseBase.C:43
void mooseWarningStream(S &oss, Args &&... args)
Definition: MooseError.h:184
const MooseBase & _moose_base
The MooseBase class deriving from this interface.
const ConsoleStream _console
An instance of helper class to write streams to the Console objects.

◆ mooseWarningNonPrefixed()

template<typename... Args>
void MooseBaseErrorInterface::mooseWarningNonPrefixed ( Args &&...  args) const
inlineinherited

Emits a warning without the prefixing included in mooseWarning().

Definition at line 85 of file MooseBaseErrorInterface.h.

86  {
87  moose::internal::mooseWarningStream(_console, std::forward<Args>(args)...);
88  }
void mooseWarningStream(S &oss, Args &&... args)
Definition: MooseError.h:184
const ConsoleStream _console
An instance of helper class to write streams to the Console objects.

◆ nActiveElem()

virtual dof_id_type MooseMesh::nActiveElem ( ) const
inlinevirtual

Reimplemented in MFEMMesh.

Definition at line 325 of file MooseMesh.h.

325 { return _mesh->n_active_elem(); }
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1433

◆ nActiveLocalElem()

virtual dof_id_type MooseMesh::nActiveLocalElem ( ) const
inlinevirtual

Reimplemented in MFEMMesh.

Definition at line 326 of file MooseMesh.h.

326 { return _mesh->n_active_local_elem(); }
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1433

◆ name()

virtual const std::string& MooseBase::name ( ) const
inlinevirtualinherited

Get the name of the class.

Returns
The name of the class

Reimplemented in MooseVariableBase.

Definition at line 57 of file MooseBase.h.

Referenced by AddElementalFieldAction::act(), CopyNodalVarsAction::act(), AdaptivityAction::act(), AddTimeStepperAction::act(), DeprecatedBlockAction::act(), SetupTimeIntegratorAction::act(), AddActionComponentAction::act(), DisplayGhostingAction::act(), MaterialOutputAction::act(), AddPeriodicBCAction::act(), FEProblemBase::addAnyRedistributers(), Executioner::addAttributeReporter(), MFEMProblem::addAuxKernel(), FEProblemBase::addAuxKernel(), FEProblemBase::addAuxScalarKernel(), DisplacedProblem::addAuxVariable(), MFEMProblem::addBoundaryCondition(), FEProblemBase::addBoundaryCondition(), PhysicsComponentInterface::addComponent(), FEProblemBase::addConstraint(), FEProblemBase::addConvergence(), FEProblemBase::addDamper(), Registry::addDataFilePath(), FEProblemBase::addDGKernel(), FEProblemBase::addDiracKernel(), FEProblemBase::addDistribution(), MooseApp::addExecutor(), MooseApp::addExecutorParams(), MFEMProblem::addFESpace(), MFEMProblem::addFunction(), FEProblemBase::addFunction(), SubProblem::addFunctor(), MFEMProblem::addFunctorMaterial(), FEProblemBase::addFunctorMaterial(), FunctorMaterial::addFunctorProperty(), FunctorMaterial::addFunctorPropertyByBlocks(), FEProblemBase::addFVBC(), FEProblemBase::addFVInitialCondition(), FEProblemBase::addFVInterfaceKernel(), FEProblemBase::addFVKernel(), ADDGKernel::ADDGKernel(), FEProblemBase::addHDGKernel(), FEProblemBase::addIndicator(), MFEMProblem::addInitialCondition(), FEProblemBase::addInitialCondition(), FEProblemBase::addInterfaceKernel(), FEProblemBase::addInterfaceMaterial(), MFEMProblem::addKernel(), FEProblemBase::addKernel(), FEProblemBase::addLinearFVBC(), FEProblemBase::addLinearFVKernel(), FEProblemBase::addMarker(), FEProblemBase::addMaterial(), FEProblemBase::addMaterialHelper(), ComponentMaterialPropertyInterface::addMaterials(), FEProblemBase::addMeshDivision(), MooseApp::addMeshGenerator(), ComponentMeshTransformHelper::addMeshGenerators(), CylinderComponent::addMeshGenerators(), MeshGenerator::addMeshSubgenerator(), MFEMProblem::addMFEMPreconditioner(), MFEMProblem::addMFEMSolver(), FEProblemBase::addMultiApp(), FEProblemBase::addNodalKernel(), FEProblemBase::addObject(), ComponentPhysicsInterface::addPhysics(), SubProblem::addPiecewiseByBlockLambdaFunctor(), MFEMProblem::addPostprocessor(), FEProblemBase::addPostprocessor(), InitialConditionBase::addPostprocessorDependencyHelper(), UserObject::addPostprocessorDependencyHelper(), FEProblemBase::addPredictor(), CreateDisplacedProblemAction::addProxyRelationshipManagers(), Action::addRelationshipManager(), FEProblemBase::addReporter(), FEProblemBase::addSampler(), FEProblemBase::addScalarKernel(), FEProblemBase::addTimeIntegrator(), MFEMProblem::addTransfer(), FEProblemBase::addTransfer(), FEProblemBase::addUserObject(), InitialConditionBase::addUserObjectDependencyHelper(), UserObject::addUserObjectDependencyHelper(), AuxKernelTempl< Real >::addUserObjectDependencyHelper(), DisplacedProblem::addVariable(), FEProblemBase::addVectorPostprocessor(), UserObject::addVectorPostprocessorDependencyHelper(), Output::advancedExecuteOn(), AdvancedExtruderGenerator::AdvancedExtruderGenerator(), MooseApp::appBinaryName(), MooseApp::appendMeshGenerator(), Registry::appNameFromAppPath(), MultiApp::appPostprocessorValue(), MultiApp::appProblem(), MultiApp::appProblemBase(), MultiApp::appUserObjectBase(), ArrayDGKernel::ArrayDGKernel(), PhysicsBase::assignBlocks(), AStableDirk4::AStableDirk4(), AuxKernelTempl< Real >::AuxKernelTempl(), Function::average(), MultiApp::backup(), CoarsenedPiecewiseLinear::buildCoarsenedGrid(), MFEMFESpace::buildFEC(), PiecewiseTabularBase::buildFromFile(), MultiAppVariableValueSamplePostprocessorTransfer::cacheElemToPostprocessorData(), MooseBase::callMooseError(), ChangeOverFixedPointPostprocessor::ChangeOverFixedPointPostprocessor(), ChangeOverTimePostprocessor::ChangeOverTimePostprocessor(), PhysicsBase::checkBlockRestrictionIdentical(), PhysicsBase::checkComponentType(), ParsedConvergence::checkConvergence(), DefaultNonlinearConvergence::checkConvergence(), FEProblemBase::checkDependMaterialsHelper(), ReporterTransferInterface::checkHasReporterValue(), FEProblemBase::checkICRestartError(), Material::checkMaterialProperty(), MooseApp::checkMetaDataIntegrity(), Damper::checkMinDamping(), Checkpoint::checkpointInfo(), Coupleable::checkWritableVar(), CompositeFunction::CompositeFunction(), MaterialBase::computeProperties(), FEProblemBase::computeUserObjectByName(), VectorPostprocessorVisualizationAux::computeValue(), MooseBaseParameterInterface::connectControllableParams(), ConstantPostprocessor::ConstantPostprocessor(), CommonOutputAction::create(), MultiApp::createApp(), MooseApp::createExecutors(), MeshGeneratorSystem::createMeshGeneratorOrder(), MooseApp::createRecoverablePerfGraph(), CutMeshByPlaneGenerator::CutMeshByPlaneGenerator(), MaterialBase::declareADProperty(), MeshGenerator::declareMeshesForSubByName(), MeshGenerator::declareNullMeshName(), MaterialBase::declareProperty(), DOFMapOutput::demangle(), DerivativeSumMaterialTempl< is_ad >::DerivativeSumMaterialTempl(), Registry::determineDataFilePath(), DGKernel::DGKernel(), DGKernelBase::DGKernelBase(), DomainUserObject::DomainUserObject(), DumpObjectsProblem::dumpObjectHelper(), ElementGroupCentroidPositions::ElementGroupCentroidPositions(), ElementMaterialSampler::ElementMaterialSampler(), ElementValueSampler::ElementValueSampler(), EigenKernel::enabled(), errorIfDistributedMesh(), MooseBase::errorPrefix(), SolutionUserObjectBase::evalMeshFunction(), SolutionUserObjectBase::evalMeshFunctionGradient(), SolutionUserObjectBase::evalMultiValuedMeshFunction(), SolutionUserObjectBase::evalMultiValuedMeshFunctionGradient(), RestartableDataReporter::execute(), PointValue::execute(), MultiAppNearestNodeTransfer::execute(), WebServerControl::execute(), MultiAppGeneralFieldTransfer::execute(), ActionWarehouse::executeActionsWithAction(), Exodus::Exodus(), ExtraIDIntegralVectorPostprocessor::ExtraIDIntegralVectorPostprocessor(), FEProblemBase::FEProblemBase(), MultiApp::fillPositions(), PointSamplerBase::finalize(), ChainControl::fullControlDataName(), FunctionDT::FunctionDT(), FunctionIC::functionName(), FVFunctionIC::functionName(), FunctorPositions::FunctorPositions(), FunctorSmootherTempl< T >::FunctorSmootherTempl(), FVOneVarDiffusionInterface::FVOneVarDiffusionInterface(), MooseServer::gatherDocumentSymbols(), BoundaryDeletionGenerator::generate(), RenameBlockGenerator::generate(), RenameBoundaryGenerator::generate(), BreakMeshByBlockGenerator::generate(), GeneratedMeshGenerator::generate(), ParsedSubdomainGeneratorBase::generate(), ParsedExtraElementIDGenerator::generate(), StitchedMeshGenerator::generate(), XYDelaunayGenerator::generate(), SubdomainBoundingBoxGenerator::generate(), MeshGenerator::generateInternal(), InterfaceMaterial::getADMaterialProperty(), Material::getADMaterialProperty(), MultiAppTransfer::getAppInfo(), MultiApp::getBoundingBox(), MooseApp::getCheckpointDirectories(), Control::getControllableParameterByName(), Control::getControllableValue(), Control::getControllableValueByName(), FEProblemBase::getConvergence(), Registry::getDataFilePath(), UserObject::getDependObjects(), DistributionInterface::getDistribution(), FEProblemBase::getDistribution(), DistributionInterface::getDistributionByName(), ElementUOProvider::getElementalValueLong(), ElementUOProvider::getElementalValueReal(), MultiApp::getExecutioner(), MooseApp::getExecutor(), FEProblemBase::getExecutor(), OutputWarehouse::getFileNumbers(), FEProblemBase::getFunction(), SubProblem::getFunctor(), NodalPatchRecovery::getGenericMaterialProperty(), InterfaceMaterial::getGenericMaterialProperty(), Material::getGenericMaterialProperty(), AuxKernelTempl< Real >::getGenericMaterialProperty(), InterfaceMaterial::getGenericNeighborMaterialProperty(), InterfaceMaterial::getGenericNeighborMaterialPropertyByName(), Material::getGenericOptionalMaterialProperty(), MaterialBase::getGenericZeroMaterialProperty(), MFEMProblem::getGridFunction(), SolutionUserObjectBase::getLocalVarIndex(), Marker::getMarkerValue(), Material::getMaterial(), FEProblemBase::getMaterial(), Material::getMaterialByName(), NodalPatchRecovery::getMaterialProperty(), InterfaceMaterial::getMaterialProperty(), Material::getMaterialProperty(), AuxKernelTempl< Real >::getMaterialProperty(), SubProblem::getMaterialPropertyBlockNames(), SubProblem::getMaterialPropertyBoundaryNames(), NodalPatchRecovery::getMaterialPropertyOld(), InterfaceMaterial::getMaterialPropertyOld(), Material::getMaterialPropertyOld(), AuxKernelTempl< Real >::getMaterialPropertyOld(), NodalPatchRecovery::getMaterialPropertyOlder(), InterfaceMaterial::getMaterialPropertyOlder(), Material::getMaterialPropertyOlder(), AuxKernelTempl< Real >::getMaterialPropertyOlder(), MFEMGeneralUserObject::getMatrixCoefficient(), MeshGenerator::getMesh(), FEProblemBase::getMeshDivision(), MeshGenerator::getMeshesByName(), MooseApp::getMeshGenerator(), MeshGenerator::getMeshGeneratorNameFromParam(), MeshGenerator::getMeshGeneratorNamesFromParam(), ActionWarehouse::getMooseAppName(), MultiAppTransfer::getMultiApp(), InterfaceMaterial::getNeighborADMaterialProperty(), InterfaceMaterial::getNeighborMaterialProperty(), InterfaceMaterial::getNeighborMaterialPropertyOld(), InterfaceMaterial::getNeighborMaterialPropertyOlder(), MooseServer::getObjectParameters(), Material::getOptionalADMaterialProperty(), Material::getOptionalMaterialProperty(), Material::getOptionalMaterialPropertyOld(), Material::getOptionalMaterialPropertyOlder(), OutputWarehouse::getOutput(), MooseApp::getParam(), FEProblemBase::getPositionsObject(), FEProblemBase::getPostprocessorValueByName(), ComponentMaterialPropertyInterface::getPropertyValue(), ReporterData::getReporterInfo(), MooseApp::getRestartableDataMap(), MooseApp::getRestartableDataMapName(), MooseApp::getRestartableMetaData(), FEProblemBase::getSampler(), MFEMGeneralUserObject::getScalarCoefficient(), TransientBase::getTimeStepperName(), ProjectedStatefulMaterialStorageAction::getTypeEnum(), FEProblemBase::getUserObject(), FEProblemBase::getUserObjectBase(), MFEMGeneralUserObject::getVectorCoefficient(), Terminator::handleMessage(), Control::hasControllableParameterByName(), FEProblemBase::hasConvergence(), FEProblemBase::hasFunction(), SubProblem::hasFunctor(), SubProblem::hasFunctorWithType(), MooseApp::hasMeshGenerator(), AdvancedOutput::hasOutputHelper(), FEProblemBase::hasPostprocessor(), FEProblemBase::hasPostprocessorValueByName(), MooseApp::hasRelationshipManager(), MooseApp::hasRestartableDataMap(), MooseApp::hasRestartableMetaData(), FEProblemBase::hasUserObject(), IterationAdaptiveDT::init(), AddVariableAction::init(), AdvancedOutput::init(), AdvancedOutput::initExecutionTypes(), AttribName::initFrom(), NestedDivision::initialize(), TransformedPositions::initialize(), JSONOutput::initialSetup(), SideFVFluxBCIntegral::initialSetup(), SolutionScalarAux::initialSetup(), MultiAppProjectionTransfer::initialSetup(), NodalVariableValue::initialSetup(), Console::initialSetup(), SolutionUserObjectBase::initialSetup(), AdvancedOutput::initOutputList(), AdvancedOutput::initPostprocessorOrVectorPostprocessorLists(), MaterialBase::initStatefulProperties(), Function::integral(), InterfaceKernelTempl< T >::InterfaceKernelTempl(), MeshGenerator::isChildMeshGenerator(), MeshGenerator::isNullMeshName(), MooseApp::isParamValid(), MeshGenerator::isParentMeshGenerator(), LinearCombinationFunction::LinearCombinationFunction(), FEProblemBase::logAdd(), Marker::Marker(), MaterialBase::markMatPropRequested(), MatDiffusionBase< Real >::MatDiffusionBase(), Material::Material(), MaterialDerivativeTestKernelBase< Real >::MaterialDerivativeTestKernelBase(), Distribution::median(), MemoryUsageReporter::MemoryUsageReporter(), MeshGenerator::meshPropertyPrefix(), MooseApp::MooseApp(), OutputWarehouse::mooseConsole(), MooseVariableInterface< Real >::MooseVariableInterface(), MultiAppGeneralFieldTransfer::MultiAppGeneralFieldTransfer(), MultiAppUserObjectTransfer::MultiAppUserObjectTransfer(), NodalPatchRecoveryAuxBase::NodalPatchRecoveryAuxBase(), NodalValueSampler::NodalValueSampler(), Registry::objData(), MeshGenerator::Comparator::operator()(), ProgressOutput::output(), DOFMapOutput::output(), Output::Output(), AdvancedOutput::outputElementalVariables(), ConsoleUtils::outputExecutionInformation(), MaterialOutputAction::outputHelper(), AdvancedOutput::outputInput(), AdvancedOutput::outputNodalVariables(), Exodus::outputPostprocessors(), AdvancedOutput::outputPostprocessors(), TableOutput::outputReporter(), AdvancedOutput::outputReporters(), AdvancedOutput::outputScalarVariables(), AdvancedOutput::outputSystemInformation(), AdvancedOutput::outputVectorPostprocessors(), ParsedCurveGenerator::ParsedCurveGenerator(), MooseServer::parseDocumentForDiagnostics(), ParsedODEKernel::ParsedODEKernel(), ComponentPhysicsInterface::physicsExists(), PiecewiseBilinear::PiecewiseBilinear(), PiecewiseByBlockFunctorMaterialTempl< T >::PiecewiseByBlockFunctorMaterialTempl(), MooseApp::possiblyLoadRestartableMetaData(), PhysicsBase::prefix(), prepare(), BlockRestrictionDebugOutput::printBlockRestrictionMap(), PerfGraphLivePrint::printStats(), MultiApp::readCommandLineArguments(), Receiver::Receiver(), Executor::Result::record(), AppFactory::reg(), Registry::registerObjectsTo(), FEProblemBase::registerRandomInterface(), MooseApp::registerRestartableDataMapName(), MooseApp::registerRestartableNameWithFilter(), GlobalParamsAction::remove(), MaterialBase::resetQpProperties(), MultiApp::restore(), ScalarComponentIC::ScalarComponentIC(), MultiApp::setAppOutputFileBase(), setBoundaryName(), Control::setControllableValue(), Control::setControllableValueByName(), GlobalParamsAction::setDoubleIndexParam(), OutputWarehouse::setFileNumbers(), GlobalParamsAction::setParam(), FEProblemBase::setPostprocessorValueByName(), FEProblemBase::setResidualObjectParamsAndLog(), GlobalParamsAction::setScalarParam(), setSubdomainName(), GlobalParamsAction::setTripleIndexParam(), NodeSetsGeneratorBase::setup(), Split::setup(), SideSetsGeneratorBase::setup(), TransientMultiApp::setupApp(), GlobalParamsAction::setVectorParam(), FullSolveMultiApp::showStatusMessage(), SideSetExtruderGenerator::SideSetExtruderGenerator(), TransientMultiApp::solveStep(), UserObject::spatialValue(), WebServerControl::startServer(), StitchedMesh::StitchedMesh(), SubProblem::storeBoundaryDelayedCheckMatProp(), SubProblem::storeBoundaryMatPropName(), MaterialBase::storeBoundaryZeroMatProp(), SubProblem::storeBoundaryZeroMatProp(), SubProblem::storeSubdomainDelayedCheckMatProp(), SubProblem::storeSubdomainMatPropName(), MaterialBase::storeSubdomainZeroMatProp(), SubProblem::storeSubdomainZeroMatProp(), MaterialBase::subdomainSetup(), TaggingInterface::TaggingInterface(), VectorPostprocessorVisualizationAux::timestepSetup(), to_json(), MultiAppDofCopyTransfer::transfer(), TransientMultiApp::TransientMultiApp(), MooseServer::traverseParseTreeAndFillSymbols(), MooseBase::typeAndName(), MooseBaseParameterInterface::uniqueParameterName(), FVFluxBC::uOnGhost(), FVFluxBC::uOnUSub(), UserObject::UserObject(), UserObjectInterface::userObjectName(), ParsedAux::validateGenericVectorNames(), PhysicsBase::variableExists(), MultiAppTransfer::variableIntegrityCheck(), VectorMagnitudeFunctorMaterialTempl< is_ad >::VectorMagnitudeFunctorMaterialTempl(), Convergence::verboseOutput(), AdvancedOutput::wantOutput(), Coupleable::writableCoupledValue(), Coupleable::writableVariable(), Console::write(), and MooseApp::writeRestartableMetaData().

57 { return _name; }
const std::string _name
The name of this class.
Definition: MooseBase.h:90

◆ needGhostGhostedBoundaries()

void MooseMesh::needGhostGhostedBoundaries ( bool  needghost)
inline

Whether or not we want to ghost ghosted boundaries.

Definition at line 616 of file MooseMesh.h.

Referenced by DistributedRectilinearMeshGenerator::generate().

616 { _need_ghost_ghosted_boundaries = needghost; }
bool _need_ghost_ghosted_boundaries
A parallel mesh generator such as DistributedRectilinearMeshGenerator already make everything ready...
Definition: MooseMesh.h:1837

◆ needsPrepareForUse()

void MooseMesh::needsPrepareForUse ( )

If this method is called, we will call libMesh's prepare_for_use method when we call Moose's prepare method.

This should only be set when the mesh structure is changed by MeshGenerators (i.e. Element deletion).

Definition at line 3160 of file MooseMesh.C.

3161 {
3162  prepared(false);
3163 }
bool prepared() const
Setter/getter for whether the mesh is prepared.
Definition: MooseMesh.C:3132

◆ needsRemoteElemDeletion() [1/2]

void MooseMesh::needsRemoteElemDeletion ( bool  need_delete)
inline

Set whether we need to delete remote elements.

Definition at line 1079 of file MooseMesh.h.

1079 { _need_delete = need_delete; }
bool _need_delete
Whether we need to delete remote elements after init&#39;ing the EquationSystems.
Definition: MooseMesh.h:1825

◆ needsRemoteElemDeletion() [2/2]

bool MooseMesh::needsRemoteElemDeletion ( ) const
inline

Whether we need to delete remote elements.

Definition at line 1084 of file MooseMesh.h.

1084 { return _need_delete; }
bool _need_delete
Whether we need to delete remote elements after init&#39;ing the EquationSystems.
Definition: MooseMesh.h:1825

◆ nElem()

dof_id_type MooseMesh::nElem ( ) const
virtual

Definition at line 3076 of file MooseMesh.C.

Referenced by PropertyReadFile::getElementData(), and PropertyReadFile::readData().

3077 {
3078  return getMesh().n_elem();
3079 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
virtual dof_id_type n_elem() const=0

◆ nFace()

unsigned int MooseMesh::nFace ( ) const
inline

accessors for the FaceInfo objects

Definition at line 1147 of file MooseMesh.h.

1147 { return _face_info.size(); }
std::vector< const FaceInfo * > _face_info
Holds only those FaceInfo objects that have processor_id equal to this process&#39;s id, e.g.
Definition: MooseMesh.h:1608

◆ nLocalNodes()

virtual dof_id_type MooseMesh::nLocalNodes ( ) const
inlinevirtual

Definition at line 324 of file MooseMesh.h.

324 { return _mesh->n_local_nodes(); }
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1433

◆ nNodes()

dof_id_type MooseMesh::nNodes ( ) const
virtual

Calls n_nodes/elem() on the underlying libMesh mesh object.

Definition at line 3070 of file MooseMesh.C.

Referenced by PropertyReadFile::getNodeData(), and PropertyReadFile::readData().

3071 {
3072  return getMesh().n_nodes();
3073 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
virtual dof_id_type n_nodes() const=0

◆ node() [1/2]

const Node & MooseMesh::node ( const dof_id_type  i) const
virtual

Various accessors (pointers/references) for Node "i".

If the requested node is a remote node on a distributed mesh, only the query accessors are valid to call, and they return NULL.

Definition at line 817 of file MooseMesh.C.

Referenced by addUniqueNode(), GeneratedMesh::buildMesh(), buildPeriodicNodeMap(), cacheInfo(), detectOrthogonalDimRanges(), getNodeBlockIds(), isSemiLocal(), and updateActiveSemiLocalNodeRange().

818 {
819  mooseDeprecated("MooseMesh::node() is deprecated, please use MooseMesh::nodeRef() instead");
820  return nodeRef(i);
821 }
void mooseDeprecated(Args &&... args) const
virtual const Node & nodeRef(const dof_id_type i) const
Definition: MooseMesh.C:831

◆ node() [2/2]

Node & MooseMesh::node ( const dof_id_type  i)
virtual

Definition at line 824 of file MooseMesh.C.

825 {
826  mooseDeprecated("MooseMesh::node() is deprecated, please use MooseMesh::nodeRef() instead");
827  return nodeRef(i);
828 }
void mooseDeprecated(Args &&... args) const
virtual const Node & nodeRef(const dof_id_type i) const
Definition: MooseMesh.C:831

◆ nodePtr() [1/2]

const Node * MooseMesh::nodePtr ( const dof_id_type  i) const
virtual

Definition at line 845 of file MooseMesh.C.

846 {
847  return &nodeRef(i);
848 }
virtual const Node & nodeRef(const dof_id_type i) const
Definition: MooseMesh.C:831

◆ nodePtr() [2/2]

Node * MooseMesh::nodePtr ( const dof_id_type  i)
virtual

Definition at line 851 of file MooseMesh.C.

852 {
853  return &nodeRef(i);
854 }
virtual const Node & nodeRef(const dof_id_type i) const
Definition: MooseMesh.C:831

◆ nodeRef() [1/2]

const Node & MooseMesh::nodeRef ( const dof_id_type  i) const
virtual

◆ nodeRef() [2/2]

Node & MooseMesh::nodeRef ( const dof_id_type  i)
virtual

Definition at line 839 of file MooseMesh.C.

840 {
841  return const_cast<Node &>(const_cast<const MooseMesh *>(this)->nodeRef(i));
842 }
virtual const Node & nodeRef(const dof_id_type i) const
Definition: MooseMesh.C:831
MooseMesh wraps a libMesh::Mesh object and enhances its capabilities by caching additional data and s...
Definition: MooseMesh.h:88

◆ nodeSetNodes()

const std::map< boundary_id_type, std::vector< dof_id_type > > & MooseMesh::nodeSetNodes ( ) const
inline
Returns
A map from nodeset ids to the vector of node ids in the nodeset

Definition at line 2185 of file MooseMesh.h.

2186 {
2187  return _node_set_nodes;
2188 }
std::map< boundary_id_type, std::vector< dof_id_type > > _node_set_nodes
list of nodes that belongs to a specified nodeset: indexing [nodeset_id] -> [array of node ids] ...
Definition: MooseMesh.h:1556

◆ nodeToActiveSemilocalElemMap()

const std::map< dof_id_type, std::vector< dof_id_type > > & MooseMesh::nodeToActiveSemilocalElemMap ( )

If not already created, creates a map from every node to all active semilocal elements to which they are connected.

Semilocal elements include local elements and elements that share at least one node with a local element.

Note
Extra ghosted elements are not included in this map!

Definition at line 1203 of file MooseMesh.C.

Referenced by FEProblemBase::initialSetup().

1204 {
1205  if (!_node_to_active_semilocal_elem_map_built) // Guard the creation with a double checked lock
1206  {
1207  Threads::spin_mutex::scoped_lock lock(Threads::spin_mtx);
1208 
1209  // This is allowing the timing to be run even with threads
1210  // This is safe because all threads will be waiting on this section when it runs
1211  // NOTE: Do not copy this construction to other places without thinking REALLY hard about it
1212  // The PerfGraph is NOT threadsafe and will cause all kinds of havok if care isn't taken
1214  Threads::in_threads = false;
1215  TIME_SECTION("nodeToActiveSemilocalElemMap", 5, "Building SemiLocalElemMap");
1217 
1219  {
1220  for (const auto & elem :
1221  as_range(getMesh().semilocal_elements_begin(), getMesh().semilocal_elements_end()))
1222  if (elem->active())
1223  for (unsigned int n = 0; n < elem->n_nodes(); n++)
1225 
1227  true; // MUST be set at the end for double-checked locking to work!
1228  }
1229  }
1230 
1232 }
bool _node_to_active_semilocal_elem_map_built
Definition: MooseMesh.h:1510
bool in_threads
dof_id_type id() const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
virtual unsigned int n_nodes() const=0
SimpleRange< IndexType > as_range(const std::pair< IndexType, IndexType > &p)
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094
bool active() const
dof_id_type node_id(const unsigned int i) const
std::map< dof_id_type, std::vector< dof_id_type > > _node_to_active_semilocal_elem_map
A map of all of the current nodes to the active elements that they are connected to.
Definition: MooseMesh.h:1509

◆ nodeToElemMap()

const std::map< dof_id_type, std::vector< dof_id_type > > & MooseMesh::nodeToElemMap ( )

If not already created, creates a map from every node to all elements to which they are connected.

Definition at line 1175 of file MooseMesh.C.

Referenced by NodalPatchRecovery::compute(), NodalPatchRecoveryAuxBase::computeValue(), ProjectionAux::computeValue(), PenetrationLocator::detectPenetration(), DMMooseGetEmbedding_Private(), ProjectionAux::elemOnNodeVariableIsDefinedOn(), NonlinearSystemBase::findImplicitGeometricCouplingEntries(), NearestNodeLocator::findNodes(), NodePositions::initialize(), ActivateElementsUserObjectBase::isNewlyActivated(), LinearNodalConstraint::LinearNodalConstraint(), ElementSubdomainModifierBase::nodeIsNewlyReinitialized(), GhostHigherDLowerDPointNeighbors::operator()(), EqualValueBoundaryConstraint::updateConstrainedNodes(), RandomData::updateGenerators(), and NearestNodeLocator::updatePatch().

1176 {
1177  if (!_node_to_elem_map_built) // Guard the creation with a double checked lock
1178  {
1179  Threads::spin_mutex::scoped_lock lock(Threads::spin_mtx);
1180 
1182  {
1183  // This is allowing the timing to be run even with threads
1184  // This is safe because all threads will be waiting on this section when it runs
1185  // NOTE: Do not copy this construction to other places without thinking REALLY hard about it
1186  // The PerfGraph is NOT threadsafe and will cause all kinds of havok if care isn't taken
1188  Threads::in_threads = false;
1189  TIME_SECTION("nodeToElemMap", 5, "Building Node To Elem Map");
1191 
1192  for (const auto & elem : getMesh().active_element_ptr_range())
1193  for (unsigned int n = 0; n < elem->n_nodes(); n++)
1194  _node_to_elem_map[elem->node_id(n)].push_back(elem->id());
1195 
1196  _node_to_elem_map_built = true; // MUST be set at the end for double-checked locking to work!
1197  }
1198  }
1199  return _node_to_elem_map;
1200 }
bool _node_to_elem_map_built
Definition: MooseMesh.h:1506
std::map< dof_id_type, std::vector< dof_id_type > > _node_to_elem_map
A map of all of the current nodes to the elements that they are connected to.
Definition: MooseMesh.h:1505
bool in_threads
dof_id_type id() const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
virtual unsigned int n_nodes() const=0
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094
dof_id_type node_id(const unsigned int i) const

◆ nPartitions()

virtual unsigned int MooseMesh::nPartitions ( ) const
inlinevirtual

Definition at line 328 of file MooseMesh.h.

328 { return _mesh->n_partitions(); }
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1433

◆ nSubdomains()

virtual SubdomainID MooseMesh::nSubdomains ( ) const
inlinevirtual

Reimplemented in MFEMMesh.

Definition at line 327 of file MooseMesh.h.

327 { return _mesh->n_subdomains(); }
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1433

◆ onMeshChanged()

void MooseMesh::onMeshChanged ( )
virtual

Declares a callback function that is executed at the conclusion of meshChanged().

Ther user can implement actions required after changing the mesh here.

Definition at line 905 of file MooseMesh.C.

Referenced by meshChanged().

906 {
907 }

◆ operator const libMesh::MeshBase &()

MooseMesh::operator const libMesh::MeshBase & ( ) const

Definition at line 3434 of file MooseMesh.C.

3434 { return getMesh(); }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443

◆ operator libMesh::MeshBase &()

MooseMesh::operator libMesh::MeshBase & ( )

Implicit conversion operator from MooseMesh -> libMesh::MeshBase.

Definition at line 3432 of file MooseMesh.C.

3432 { return getMesh(); }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443

◆ operator=()

MooseMesh& MooseMesh::operator= ( const MooseMesh other_mesh)
delete

◆ ownedElemInfoBegin()

MooseMesh::elem_info_iterator MooseMesh::ownedElemInfoBegin ( )

Iterators to owned faceInfo objects.

These faceInfo-s are required for the face loops and to filter out the faceInfo-s that are not owned by this processor in case we have a distributed mesh and we included FaceInfo objects that are on processor boundaries

Definition at line 1525 of file MooseMesh.C.

Referenced by LinearSystem::computeGradients(), LinearSystem::computeLinearSystemInternal(), and FEProblemBase::projectSolution().

1526 {
1527  return elem_info_iterator(_elem_info.begin(),
1528  _elem_info.end(),
1530 }
std::vector< const ElemInfo * > _elem_info
Holds only those ElemInfo objects that have processor_id equal to this process&#39;s id, e.g.
Definition: MooseMesh.h:1600

◆ ownedElemInfoEnd()

MooseMesh::elem_info_iterator MooseMesh::ownedElemInfoEnd ( )

Definition at line 1533 of file MooseMesh.C.

Referenced by LinearSystem::computeGradients(), LinearSystem::computeLinearSystemInternal(), and FEProblemBase::projectSolution().

1534 {
1535  return elem_info_iterator(_elem_info.end(),
1536  _elem_info.end(),
1538 }
std::vector< const ElemInfo * > _elem_info
Holds only those ElemInfo objects that have processor_id equal to this process&#39;s id, e.g.
Definition: MooseMesh.h:1600

◆ ownedFaceInfoBegin()

MooseMesh::face_info_iterator MooseMesh::ownedFaceInfoBegin ( )

Iterators to owned faceInfo objects.

These faceInfo-s are required for the face loops and to filter out the faceInfo-s that are not owned by this processor in case we have a distributed mesh and we included FaceInfo objects that are on processor boundaries

Definition at line 1507 of file MooseMesh.C.

Referenced by LinearSystem::computeGradients(), NonlinearSystemBase::computeJacobianInternal(), LinearSystem::computeLinearSystemInternal(), NonlinearSystemBase::computeResidualAndJacobianInternal(), and NonlinearSystemBase::computeResidualInternal().

1508 {
1509  return face_info_iterator(
1510  _face_info.begin(),
1511  _face_info.end(),
1513 }
std::vector< const FaceInfo * > _face_info
Holds only those FaceInfo objects that have processor_id equal to this process&#39;s id, e.g.
Definition: MooseMesh.h:1608
processor_id_type processor_id() const

◆ ownedFaceInfoEnd()

MooseMesh::face_info_iterator MooseMesh::ownedFaceInfoEnd ( )

Definition at line 1516 of file MooseMesh.C.

Referenced by LinearSystem::computeGradients(), NonlinearSystemBase::computeJacobianInternal(), LinearSystem::computeLinearSystemInternal(), NonlinearSystemBase::computeResidualAndJacobianInternal(), and NonlinearSystemBase::computeResidualInternal().

1517 {
1518  return face_info_iterator(
1519  _face_info.end(),
1520  _face_info.end(),
1522 }
std::vector< const FaceInfo * > _face_info
Holds only those FaceInfo objects that have processor_id equal to this process&#39;s id, e.g.
Definition: MooseMesh.h:1608
processor_id_type processor_id() const

◆ paramError()

template<typename... Args>
void MooseBaseParameterInterface::paramError ( const std::string &  param,
Args...  args 
) const
inherited

Emits an error prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message.

If this object's parameters were not created directly by the Parser, then this function falls back to the normal behavior of mooseError - only printing a message using the given args.

Definition at line 255 of file MooseBaseParameterInterface.h.

Referenced by HierarchicalGridPartitioner::_do_partition(), AutoCheckpointAction::act(), SetupDebugAction::act(), CommonOutputAction::act(), AddPeriodicBCAction::act(), ADConservativeAdvectionBC::ADConservativeAdvectionBC(), DiffusionCG::addFEKernels(), DiffusionFV::addFVKernels(), NEML2ModelExecutor::addGatheredParameter(), NEML2ModelExecutor::addGatheredVariable(), ADDGKernel::ADDGKernel(), CylinderComponent::addMeshGenerators(), AddPeriodicBCAction::AddPeriodicBCAction(), ReporterPointSource::addPoints(), ADIntegratedBCTempl< T >::ADIntegratedBCTempl(), ADKernelTempl< T >::ADKernelTempl(), ADNodalKernel::ADNodalKernel(), ADPenaltyPeriodicSegmentalConstraint::ADPenaltyPeriodicSegmentalConstraint(), ADPeriodicSegmentalConstraint::ADPeriodicSegmentalConstraint(), AdvancedExtruderGenerator::AdvancedExtruderGenerator(), AdvectiveFluxAux::AdvectiveFluxAux(), ADVectorFunctionDirichletBC::ADVectorFunctionDirichletBC(), AnnularMesh::AnnularMesh(), AnnularMeshGenerator::AnnularMeshGenerator(), ArrayBodyForce::ArrayBodyForce(), ArrayDGKernel::ArrayDGKernel(), ArrayDGLowerDKernel::ArrayDGLowerDKernel(), ArrayDirichletBC::ArrayDirichletBC(), ArrayHFEMDirichletBC::ArrayHFEMDirichletBC(), ArrayIntegratedBC::ArrayIntegratedBC(), ArrayKernel::ArrayKernel(), ArrayLowerDIntegratedBC::ArrayLowerDIntegratedBC(), ArrayParsedAux::ArrayParsedAux(), ArrayPenaltyDirichletBC::ArrayPenaltyDirichletBC(), ArrayVacuumBC::ArrayVacuumBC(), ArrayVarReductionAux::ArrayVarReductionAux(), ParsedSubdomainIDsGenerator::assignElemSubdomainID(), AuxKernelTempl< Real >::AuxKernelTempl(), BatchMeshGeneratorAction::BatchMeshGeneratorAction(), BlockDeletionGenerator::BlockDeletionGenerator(), BlockWeightedPartitioner::BlockWeightedPartitioner(), BoundsBase::BoundsBase(), BreakMeshByBlockGenerator::BreakMeshByBlockGenerator(), BuildArrayVariableAux::BuildArrayVariableAux(), PiecewiseTabularBase::buildFromFile(), MFEMMesh::buildMesh(), CartesianGridDivision::CartesianGridDivision(), checkComponent(), MeshGenerator::checkGetMesh(), ComponentInitialConditionInterface::checkInitialConditionsAllRequested(), BatchMeshGeneratorAction::checkInputParameterType(), PhysicsBase::checkIntegrityEarly(), PostprocessorInterface::checkParam(), FEProblemBase::checkProblemIntegrity(), MultiAppReporterTransfer::checkSiblingsTransferSupported(), Coupleable::checkVar(), MultiAppTransfer::checkVariable(), CircularBoundaryCorrectionGenerator::CircularBoundaryCorrectionGenerator(), CircularBoundaryCorrectionGenerator::circularCenterCalculator(), MultiAppGeneralFieldTransfer::closestToPosition(), CoarsenBlockGenerator::CoarsenBlockGenerator(), CombinerGenerator::CombinerGenerator(), ComponentInitialConditionInterface::ComponentInitialConditionInterface(), ComponentMaterialPropertyInterface::ComponentMaterialPropertyInterface(), CompositionDT::CompositionDT(), FunctorAux::computeValue(), ConcentricCircleMeshGenerator::ConcentricCircleMeshGenerator(), LibtorchNeuralNetControl::conditionalParameterError(), ConservativeAdvectionTempl< is_ad >::ConservativeAdvectionTempl(), ConstantVectorPostprocessor::ConstantVectorPostprocessor(), ContainsPointAux::ContainsPointAux(), CopyValueAux::CopyValueAux(), Coupleable::Coupleable(), CoupledForceTempl< is_ad >::CoupledForceTempl(), CoupledValueFunctionMaterialTempl< is_ad >::CoupledValueFunctionMaterialTempl(), MultiApp::createApp(), MeshGeneratorSystem::createMeshGenerator(), CylindricalGridDivision::CylindricalGridDivision(), ConstantReporter::declareConstantReporterValues(), AccumulateReporter::declareLateValues(), DGKernel::DGKernel(), DGKernelBase::DGKernelBase(), DGLowerDKernel::DGLowerDKernel(), DiffusionFluxAux::DiffusionFluxAux(), DomainUserObject::DomainUserObject(), EigenProblem::EigenProblem(), Eigenvalue::Eigenvalue(), ElementGroupCentroidPositions::ElementGroupCentroidPositions(), ElementLengthAux::ElementLengthAux(), ElementLpNormAux::ElementLpNormAux(), ElementValueSampler::ElementValueSampler(), ElementVectorL2Error::ElementVectorL2Error(), EqualValueEmbeddedConstraintTempl< is_ad >::EqualValueEmbeddedConstraintTempl(), ReporterPointSource::errorCheck(), ExamplePatchMeshGenerator::ExamplePatchMeshGenerator(), MultiAppNearestNodeTransfer::execute(), MultiAppUserObjectTransfer::execute(), ExtraElementIDAux::ExtraElementIDAux(), ExtraElementIntegerDivision::ExtraElementIntegerDivision(), FEProblemSolve::FEProblemSolve(), FileMeshGenerator::FileMeshGenerator(), FillBetweenCurvesGenerator::FillBetweenCurvesGenerator(), FillBetweenSidesetsGenerator::FillBetweenSidesetsGenerator(), ReporterPointSource::fillPoint(), SpatialUserObjectVectorPostprocessor::fillPoints(), CombinerGenerator::fillPositions(), MultiApp::fillPositions(), InternalSideIndicatorBase::finalize(), FixedPointSolve::FixedPointSolve(), ForcingFunctionAux::ForcingFunctionAux(), FullSolveMultiApp::FullSolveMultiApp(), FunctionArrayAux::FunctionArrayAux(), FunctionValuePostprocessor::FunctionValuePostprocessor(), FunctorADConverterTempl< T >::FunctorADConverterTempl(), FunctorAux::FunctorAux(), FunctorBinnedValuesDivision::FunctorBinnedValuesDivision(), FunctorCoordinatesFunctionAux::FunctorCoordinatesFunctionAux(), FunctorElementalGradientAuxTempl< is_ad >::FunctorElementalGradientAuxTempl(), FunctorExtremaPositions::FunctorExtremaPositions(), FunctorIC::FunctorIC(), FunctorPositions::FunctorPositions(), FunctorVectorElementalAuxTempl< is_ad >::FunctorVectorElementalAuxTempl(), FVAdvection::FVAdvection(), FVFluxBC::FVFluxBC(), FVInterfaceKernel::FVInterfaceKernel(), FVOneVarDiffusionInterface::FVOneVarDiffusionInterface(), FVTwoVarContinuityConstraint::FVTwoVarContinuityConstraint(), BoundaryDeletionGenerator::generate(), ElementsToTetrahedronsConverter::generate(), AddMetaDataGenerator::generate(), BlockToMeshConverterGenerator::generate(), BreakBoundaryOnSubdomainGenerator::generate(), ExtraNodesetGenerator::generate(), FillBetweenCurvesGenerator::generate(), FillBetweenSidesetsGenerator::generate(), LowerDBlockFromSidesetGenerator::generate(), PlaneIDMeshGenerator::generate(), RenameBlockGenerator::generate(), RenameBoundaryGenerator::generate(), BlockDeletionGenerator::generate(), CoarsenBlockGenerator::generate(), FlipSidesetGenerator::generate(), GeneratedMeshGenerator::generate(), BreakMeshByBlockGenerator::generate(), ParsedSubdomainGeneratorBase::generate(), RefineBlockGenerator::generate(), RefineSidesetGenerator::generate(), AdvancedExtruderGenerator::generate(), CombinerGenerator::generate(), CircularBoundaryCorrectionGenerator::generate(), BreakMeshByElementGenerator::generate(), MeshCollectionGenerator::generate(), MeshExtruderGenerator::generate(), ParsedCurveGenerator::generate(), ParsedExtraElementIDGenerator::generate(), StackGenerator::generate(), StitchedMeshGenerator::generate(), XYZDelaunayGenerator::generate(), XYDelaunayGenerator::generate(), XYMeshLineCutter::generate(), CutMeshByLevelSetGeneratorBase::generate(), PatternedMeshGenerator::generate(), SubdomainBoundingBoxGenerator::generate(), GeneratedMeshGenerator::GeneratedMeshGenerator(), GenericFunctorGradientMaterialTempl< is_ad >::GenericFunctorGradientMaterialTempl(), GenericFunctorMaterialTempl< is_ad >::GenericFunctorMaterialTempl(), GenericFunctorTimeDerivativeMaterialTempl< is_ad >::GenericFunctorTimeDerivativeMaterialTempl(), GenericVectorFunctorMaterialTempl< is_ad >::GenericVectorFunctorMaterialTempl(), PropertyReadFile::getBlockData(), ComponentBoundaryConditionInterface::getBoundaryCondition(), MultiApp::getCommandLineArgs(), PropertyReadFile::getData(), PropertyReadFile::getFileNames(), Sampler::getGlobalSamples(), ComponentInitialConditionInterface::getInitialCondition(), NEML2Action::getInputParameterMapping(), MultiAppNearestNodeTransfer::getLocalEntitiesAndComponents(), Sampler::getLocalSamples(), MeshGenerator::getMeshGeneratorNameFromParam(), MeshGenerator::getMeshGeneratorNamesFromParam(), Sampler::getNextLocalRow(), FEProblemSolve::getParamFromNonlinearSystemVectorParam(), PostprocessorInterface::getPostprocessorNameInternal(), PostprocessorInterface::getPostprocessorValueInternal(), MultiAppNearestNodeTransfer::getTargetLocalNodes(), UserObjectInterface::getUserObjectBase(), UserObjectInterface::getUserObjectName(), HFEMDirichletBC::HFEMDirichletBC(), AddVariableAction::init(), MultiApp::init(), DistributedPositions::initialize(), BlockWeightedPartitioner::initialize(), BlockRestrictable::initializeBlockRestrictable(), BoundaryRestrictable::initializeBoundaryRestrictable(), PhysicsBase::initializePhysics(), JSONOutput::initialSetup(), MultiAppCloneReporterTransfer::initialSetup(), SolutionIC::initialSetup(), SideFVFluxBCIntegral::initialSetup(), ElementSubdomainModifierBase::initialSetup(), MultiAppVariableValueSamplePostprocessorTransfer::initialSetup(), MultiAppGeneralFieldNearestLocationTransfer::initialSetup(), MultiAppDofCopyTransfer::initialSetup(), HistogramVectorPostprocessor::initialSetup(), ReferenceResidualConvergence::initialSetup(), PiecewiseConstantFromCSV::initialSetup(), LibtorchControlValuePostprocessor::initialSetup(), MultiAppGeneralFieldTransfer::initialSetup(), SampledOutput::initSample(), AddMetaDataGenerator::inputChecker(), IntegratedBC::IntegratedBC(), InterfaceDiffusiveFluxIntegralTempl< is_ad >::InterfaceDiffusiveFluxIntegralTempl(), InterfaceValueUserObjectAux::InterfaceValueUserObjectAux(), InternalSideIndicatorBase::InternalSideIndicatorBase(), InterpolatedStatefulMaterialTempl< T >::InterpolatedStatefulMaterialTempl(), InversePowerMethod::InversePowerMethod(), IterationAdaptiveDT::IterationAdaptiveDT(), MultiApp::keepSolutionDuringRestore(), Kernel::Kernel(), LibtorchNeuralNetControl::LibtorchNeuralNetControl(), LinearCombinationFunction::LinearCombinationFunction(), LowerDIntegratedBC::LowerDIntegratedBC(), PNGOutput::makeMeshFunc(), MatCoupledForce::MatCoupledForce(), MaterialADConverterTempl< T >::MaterialADConverterTempl(), MaterialFunctorConverterTempl< T >::MaterialFunctorConverterTempl(), MatrixSymmetryCheck::MatrixSymmetryCheck(), PatternedMeshGenerator::mergeSubdomainNameMaps(), MeshCollectionGenerator::MeshCollectionGenerator(), MeshDiagnosticsGenerator::MeshDiagnosticsGenerator(), MeshDivisionAux::MeshDivisionAux(), MeshGenerator::MeshGenerator(), MeshGeneratorComponent::MeshGeneratorComponent(), MFEMGenericFunctorMaterial::MFEMGenericFunctorMaterial(), MFEMGenericFunctorVectorMaterial::MFEMGenericFunctorVectorMaterial(), MooseLinearVariableFV< Real >::MooseLinearVariableFV(), UserObjectInterface::mooseObjectError(), MoosePreconditioner::MoosePreconditioner(), MooseStaticCondensationPreconditioner::MooseStaticCondensationPreconditioner(), MooseVariableBase::MooseVariableBase(), MortarConstraintBase::MortarConstraintBase(), MortarNodalAuxKernelTempl< ComputeValueType >::MortarNodalAuxKernelTempl(), MultiApp::moveApp(), MoveNodeGenerator::MoveNodeGenerator(), MultiApp::MultiApp(), MultiAppCloneReporterTransfer::MultiAppCloneReporterTransfer(), MultiAppGeneralFieldNearestLocationTransfer::MultiAppGeneralFieldNearestLocationTransfer(), MultiAppGeneralFieldShapeEvaluationTransfer::MultiAppGeneralFieldShapeEvaluationTransfer(), MultiAppGeneralFieldTransfer::MultiAppGeneralFieldTransfer(), MultiAppGeneralFieldUserObjectTransfer::MultiAppGeneralFieldUserObjectTransfer(), MultiAppGeometricInterpolationTransfer::MultiAppGeometricInterpolationTransfer(), MultiAppNearestNodeTransfer::MultiAppNearestNodeTransfer(), MultiAppPostprocessorInterpolationTransfer::MultiAppPostprocessorInterpolationTransfer(), MultiAppPostprocessorToAuxScalarTransfer::MultiAppPostprocessorToAuxScalarTransfer(), MultiAppPostprocessorTransfer::MultiAppPostprocessorTransfer(), MultiAppProjectionTransfer::MultiAppProjectionTransfer(), MultiAppReporterTransfer::MultiAppReporterTransfer(), MultiAppScalarToAuxScalarTransfer::MultiAppScalarToAuxScalarTransfer(), MultiAppShapeEvaluationTransfer::MultiAppShapeEvaluationTransfer(), MultiAppTransfer::MultiAppTransfer(), MultiAppUserObjectTransfer::MultiAppUserObjectTransfer(), MultiAppVariableValueSamplePostprocessorTransfer::MultiAppVariableValueSamplePostprocessorTransfer(), MultiAppVariableValueSampleTransfer::MultiAppVariableValueSampleTransfer(), MultiAppVectorPostprocessorTransfer::MultiAppVectorPostprocessorTransfer(), MultiSystemSolveObject::MultiSystemSolveObject(), NearestNodeValueAux::NearestNodeValueAux(), NEML2Action::NEML2Action(), NestedDivision::NestedDivision(), NodalBC::NodalBC(), NodalEqualValueConstraint::NodalEqualValueConstraint(), NodalKernel::NodalKernel(), NodalPatchRecoveryAux::NodalPatchRecoveryAux(), NodalValueSampler::NodalValueSampler(), Output::Output(), ParsedCurveGenerator::ParsedCurveGenerator(), ParsedFunctorMaterialTempl< is_ad >::ParsedFunctorMaterialTempl(), ParsedPostprocessor::ParsedPostprocessor(), PatternedMeshGenerator::PatternedMeshGenerator(), PenaltyPeriodicSegmentalConstraint::PenaltyPeriodicSegmentalConstraint(), PeriodicSegmentalConstraint::PeriodicSegmentalConstraint(), PIDTransientControl::PIDTransientControl(), PlaneDeletionGenerator::PlaneDeletionGenerator(), PlaneIDMeshGenerator::PlaneIDMeshGenerator(), PointwiseRenormalizeVector::PointwiseRenormalizeVector(), PolyLineMeshGenerator::PolyLineMeshGenerator(), ReporterInterface::possiblyCheckHasReporter(), VectorPostprocessorInterface::possiblyCheckHasVectorPostprocessor(), LibmeshPartitioner::prepareBlocksForSubdomainPartitioner(), ProjectedMaterialPropertyNodalPatchRecoveryAux::ProjectedMaterialPropertyNodalPatchRecoveryAux(), ProjectionAux::ProjectionAux(), PropertyReadFile::PropertyReadFile(), RandomIC::RandomIC(), MultiApp::readCommandLineArguments(), PropertyReadFile::readData(), SolutionUserObjectBase::readXda(), ReferenceResidualConvergence::ReferenceResidualConvergence(), RefineBlockGenerator::RefineBlockGenerator(), RefineSidesetGenerator::RefineSidesetGenerator(), RenameBlockGenerator::RenameBlockGenerator(), RenameBoundaryGenerator::RenameBoundaryGenerator(), ReporterPointSource::ReporterPointSource(), SecondTimeDerivativeAux::SecondTimeDerivativeAux(), FEProblemBase::setLinearConvergenceNames(), FEProblemBase::setNonlinearConvergenceNames(), setPartitioner(), NodeSetsGeneratorBase::setup(), SideSetsGeneratorBase::setup(), NEML2Action::setupDerivativeMappings(), NEML2Action::setupParameterDerivativeMappings(), TimeSequenceStepperBase::setupSequence(), SidesetAroundSubdomainUpdater::SidesetAroundSubdomainUpdater(), SideSetsFromBoundingBoxGenerator::SideSetsFromBoundingBoxGenerator(), SingleRankPartitioner::SingleRankPartitioner(), SphericalGridDivision::SphericalGridDivision(), SymmetryTransformGenerator::SymmetryTransformGenerator(), Terminator::Terminator(), TimeDerivativeAux::TimeDerivativeAux(), Transfer::Transfer(), TransformGenerator::TransformGenerator(), TransientMultiApp::TransientMultiApp(), ParsedCurveGenerator::tSectionSpaceDefiner(), UniqueExtraIDMeshGenerator::UniqueExtraIDMeshGenerator(), UserObject::UserObject(), Checkpoint::validateExecuteOn(), ParsedAux::validateGenericVectorNames(), ParsedMaterialBase::validateVectorNames(), FunctorIC::value(), VariableCondensationPreconditioner::VariableCondensationPreconditioner(), VectorBodyForce::VectorBodyForce(), VectorFunctionDirichletBC::VectorFunctionDirichletBC(), VectorFunctionIC::VectorFunctionIC(), VolumeAux::VolumeAux(), WebServerControl::WebServerControl(), XYDelaunayGenerator::XYDelaunayGenerator(), XYMeshLineCutter::XYMeshLineCutter(), and XYZDelaunayGenerator::XYZDelaunayGenerator().

256 {
257  Moose::show_trace = false;
258  _moose_base.callMooseError(paramErrorMsg(param, std::forward<Args>(args)...),
259  /* with_prefix = */ false);
260  Moose::show_trace = true;
261 }
bool show_trace
Set to true (the default) to print the stack trace with error and warning messages - false to omit it...
Definition: Moose.C:757
const MooseBase & _moose_base
The MooseBase object that inherits this class.
std::string paramErrorMsg(const std::string &param, Args... args) const
void callMooseError(std::string msg, const bool with_prefix) const
Calls moose error with the message msg.
Definition: MooseBase.C:33

◆ parameters()

const InputParameters& MooseBaseParameterInterface::parameters ( ) const
inlineinherited

Get the parameters of the object.

Returns
The parameters of the object

Definition at line 62 of file MooseBaseParameterInterface.h.

Referenced by AddDefaultConvergenceAction::act(), SetupDebugAction::act(), AddActionComponentAction::act(), CommonOutputAction::act(), Action::Action(), FEProblemBase::addAnyRedistributers(), MFEMProblem::addAuxKernel(), FEProblemBase::addAuxKernel(), FEProblemBase::addAuxScalarKernel(), MFEMProblem::addAuxVariable(), DisplacedProblem::addAuxVariable(), MFEMProblem::addBoundaryCondition(), FEProblemBase::addBoundaryCondition(), FEProblemBase::addConstraint(), FEProblemBase::addConvergence(), FEProblemBase::addDamper(), ReferenceResidualProblem::addDefaultNonlinearConvergence(), FEProblemBase::addDefaultNonlinearConvergence(), FEProblemBase::addDGKernel(), FEProblemBase::addDiracKernel(), FEProblemBase::addDistribution(), MFEMProblem::addFESpace(), MFEMProblem::addFunction(), FEProblemBase::addFunction(), MFEMProblem::addFunctorMaterial(), FEProblemBase::addFunctorMaterial(), FEProblemBase::addFVBC(), FEProblemBase::addFVInitialCondition(), FEProblemBase::addFVInterfaceKernel(), FEProblemBase::addFVKernel(), MFEMProblem::addGridFunction(), FEProblemBase::addHDGKernel(), FEProblemBase::addIndicator(), MFEMProblem::addInitialCondition(), FEProblemBase::addInitialCondition(), DiffusionPhysicsBase::addInitialConditions(), FEProblemBase::addInterfaceKernel(), FEProblemBase::addInterfaceMaterial(), MFEMProblem::addKernel(), FEProblemBase::addKernel(), FEProblemBase::addLinearFVBC(), FEProblemBase::addLinearFVKernel(), FEProblem::addLineSearch(), FEProblemBase::addMarker(), FEProblemBase::addMaterial(), FEProblemBase::addMaterialHelper(), FEProblemBase::addMeshDivision(), MFEMProblem::addMFEMFESpaceFromMOOSEVariable(), MFEMProblem::addMFEMPreconditioner(), MFEMProblem::addMFEMSolver(), FEProblemBase::addMultiApp(), FEProblemBase::addNodalKernel(), FEProblemBase::addObject(), FEProblemBase::addObjectParamsHelper(), FEProblemBase::addOutput(), MFEMProblem::addPostprocessor(), FEProblemBase::addPostprocessor(), FEProblemBase::addPredictor(), FEProblemBase::addReporter(), FEProblemBase::addSampler(), FEProblemBase::addScalarKernel(), MFEMProblem::addSubMesh(), FEProblemBase::addTimeIntegrator(), MFEMProblem::addTransfer(), FEProblemBase::addTransfer(), FEProblemBase::addUserObject(), MFEMProblem::addVariable(), DisplacedProblem::addVariable(), FEProblemBase::addVectorPostprocessor(), ADPiecewiseLinearInterpolationMaterial::ADPiecewiseLinearInterpolationMaterial(), AdvancedOutput::AdvancedOutput(), ADVectorFunctionDirichletBC::ADVectorFunctionDirichletBC(), AnnularMesh::AnnularMesh(), AnnularMeshGenerator::AnnularMeshGenerator(), Action::associateWithParameter(), AuxKernelTempl< Real >::AuxKernelTempl(), AuxScalarKernel::AuxScalarKernel(), BoundsBase::BoundsBase(), buildTypedMesh(), PostprocessorInterface::checkParam(), AddDefaultConvergenceAction::checkUnusedNonlinearConvergenceParameters(), SampledOutput::cloneMesh(), LibtorchNeuralNetControl::conditionalParameterError(), Console::Console(), CommonOutputAction::create(), MultiApp::createApp(), Postprocessor::declareValue(), DumpObjectsProblem::deduceNecessaryParameters(), DumpObjectsProblem::dumpObjectHelper(), DumpObjectsProblem::DumpObjectsProblem(), EigenProblem::EigenProblem(), Eigenvalue::Eigenvalue(), ElementMaterialSampler::ElementMaterialSampler(), ExamplePatchMeshGenerator::ExamplePatchMeshGenerator(), Executor::Executor(), Exodus::Exodus(), FEProblem::FEProblem(), FEProblemBase::FEProblemBase(), FixedPointSolve::FixedPointSolve(), FunctorSmootherTempl< T >::FunctorSmootherTempl(), GapValueAux::GapValueAux(), ParsedSubdomainGeneratorBase::generate(), MooseBaseParameterInterface::getCheckedPointerParam(), ActionWarehouse::getCurrentActionName(), ExecutorInterface::getExecutor(), Material::getMaterial(), ReporterInterface::getReporterName(), Reporter::getReporterValueName(), UserObjectInterface::getUserObjectName(), VectorPostprocessorInterface::getVectorPostprocessorName(), GhostingUserObject::GhostingUserObject(), AttribSystem::initFrom(), AttribDisplaced::initFrom(), BlockRestrictable::initializeBlockRestrictable(), FullSolveMultiApp::initialSetup(), FEProblemBase::initNullSpaceVectors(), InterfaceDiffusiveFluxIntegralTempl< is_ad >::InterfaceDiffusiveFluxIntegralTempl(), InterfaceIntegralVariableValuePostprocessor::InterfaceIntegralVariableValuePostprocessor(), InterfaceKernelTempl< T >::InterfaceKernelTempl(), isValid(), IterationAdaptiveDT::IterationAdaptiveDT(), LibtorchNeuralNetControl::LibtorchNeuralNetControl(), MFEMCGSolver::MFEMCGSolver(), MFEMGMRESSolver::MFEMGMRESSolver(), MFEMHypreADS::MFEMHypreADS(), MFEMHypreAMS::MFEMHypreAMS(), MFEMHypreBoomerAMG::MFEMHypreBoomerAMG(), MFEMHypreFGMRES::MFEMHypreFGMRES(), MFEMHypreGMRES::MFEMHypreGMRES(), MFEMHyprePCG::MFEMHyprePCG(), MFEMOperatorJacobiSmoother::MFEMOperatorJacobiSmoother(), MFEMSuperLU::MFEMSuperLU(), MooseObject::MooseObject(), UserObjectInterface::mooseObjectError(), MooseVariableInterface< Real >::MooseVariableInterface(), MultiApp::MultiApp(), MultiAppGeneralFieldTransfer::MultiAppGeneralFieldTransfer(), MultiAppGeneralFieldUserObjectTransfer::MultiAppGeneralFieldUserObjectTransfer(), MultiAppTransfer::MultiAppTransfer(), MultiAppVariableValueSamplePostprocessorTransfer::MultiAppVariableValueSamplePostprocessorTransfer(), NodeFaceConstraint::NodeFaceConstraint(), OverlayMeshGenerator::OverlayMeshGenerator(), PenetrationAux::PenetrationAux(), PiecewiseBilinear::PiecewiseBilinear(), PiecewiseLinearInterpolationMaterial::PiecewiseLinearInterpolationMaterial(), NEML2Action::printSummary(), ProjectedStatefulMaterialStorageAction::processProperty(), PropertyReadFile::PropertyReadFile(), PseudoTimestep::PseudoTimestep(), RandomIC::RandomIC(), ReferenceResidualConvergence::ReferenceResidualConvergence(), InputParameterWarehouse::removeInputParameters(), FEProblem::setInputParametersFEProblem(), FEProblemBase::setInputParametersFEProblem(), FEProblemBase::setResidualObjectParamsAndLog(), SideSetsGeneratorBase::setup(), SideSetsFromBoundingBoxGenerator::SideSetsFromBoundingBoxGenerator(), SteffensenSolve::SteffensenSolve(), Moose::PetscSupport::storePetscOptions(), DumpObjectsProblem::stringifyParameters(), TaggingInterface::TaggingInterface(), Transfer::Transfer(), TransientBase::TransientBase(), VectorBodyForce::VectorBodyForce(), VectorFunctionDirichletBC::VectorFunctionDirichletBC(), VectorFunctionIC::VectorFunctionIC(), and VectorMagnitudeFunctorMaterialTempl< is_ad >::VectorMagnitudeFunctorMaterialTempl().

62 { return _pars; }
const InputParameters & _pars
Parameters of this object, references the InputParameters stored in the InputParametersWarehouse.

◆ paramInfo()

template<typename... Args>
void MooseBaseParameterInterface::paramInfo ( const std::string &  param,
Args...  args 
) const
inherited

Emits an informational message prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message.

If this object's parameters were not created directly by the Parser, then this function falls back to the normal behavior of mooseInfo - only printing a message using the given args.

Definition at line 272 of file MooseBaseParameterInterface.h.

Referenced by GridPartitioner::_do_partition(), ComboMarker::ComboMarker(), FunctorIC::FunctorIC(), and TransientMultiApp::TransientMultiApp().

273 {
274  mooseInfo(paramErrorMsg(param, std::forward<Args>(args)...));
275 }
void mooseInfo(Args &&... args)
Emit an informational message with the given stringified, concatenated args.
Definition: MooseError.h:369
std::string paramErrorMsg(const std::string &param, Args... args) const

◆ paramWarning()

template<typename... Args>
void MooseBaseParameterInterface::paramWarning ( const std::string &  param,
Args...  args 
) const
inherited

Emits a warning prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message.

If this object's parameters were not created directly by the Parser, then this function falls back to the normal behavior of mooseWarning - only printing a message using the given args.

Definition at line 265 of file MooseBaseParameterInterface.h.

Referenced by GridPartitioner::_do_partition(), EigenProblem::checkProblemIntegrity(), CombinerGenerator::copyIntoMesh(), MultiAppNearestNodeTransfer::execute(), FEProblemSolve::FEProblemSolve(), FixedPointSolve::FixedPointSolve(), UniqueExtraIDMeshGenerator::generate(), PlaneIDMeshGenerator::generate(), Terminator::initialSetup(), SampledOutput::initSample(), MooseMesh(), FEProblemBase::setPreserveMatrixSparsityPattern(), and Terminator::Terminator().

266 {
267  mooseWarning(paramErrorMsg(param, std::forward<Args>(args)...));
268 }
void mooseWarning(Args &&... args)
Emit a warning message with the given stringified, concatenated args.
Definition: MooseError.h:336
std::string paramErrorMsg(const std::string &param, Args... args) const

◆ partitionerName()

const MooseEnum& MooseMesh::partitionerName ( ) const
inline

Definition at line 1021 of file MooseMesh.h.

1021 { return _partitioner_name; }
MooseEnum _partitioner_name
The partitioner used on this mesh.
Definition: MooseMesh.h:1436

◆ partitioning()

MooseEnum MooseMesh::partitioning ( )
static

returns MooseMesh partitioning options so other classes can use it

Definition at line 3893 of file MooseMesh.C.

3894 {
3895  MooseEnum partitioning("default=-3 metis=-2 parmetis=-1 linear=0 centroid hilbert_sfc morton_sfc",
3896  "default");
3897  return partitioning;
3898 }
This is a "smart" enum class intended to replace many of the shortcomings in the C++ enum type It sho...
Definition: MooseEnum.h:33
static MooseEnum partitioning()
returns MooseMesh partitioning options so other classes can use it
Definition: MooseMesh.C:3893

◆ perfGraph()

PerfGraph & PerfGraphInterface::perfGraph ( )
inherited

Get the PerfGraph.

Definition at line 78 of file PerfGraphInterface.C.

Referenced by CommonOutputAction::act(), PerfGraphData::finalize(), and PerfGraphOutput::output().

79 {
80  return _pg_moose_app.perfGraph();
81 }
MooseApp & _pg_moose_app
The MooseApp that owns the PerfGraph.
PerfGraph & perfGraph()
Get the PerfGraph for this app.
Definition: MooseApp.h:161

◆ prepare()

bool MooseMesh::prepare ( const MeshBase mesh_to_clone)

Calls prepare_for_use() if the underlying MeshBase object isn't prepared, then communicates various boundary information on parallel meshes.

Also calls update() internally. Instead of calling prepare_for_use on the currently held MeshBase object, a mesh_to_clone can be provided. If it is provided (e.g. this method is given a non-null argument), then _mesh will be assigned a clone of the mesh_to_clone. The provided mesh_to_clone must already be prepared

Parameters
mesh_to_cloneIf nonnull, we will clone this mesh instead of preparing our current one
Returns
Whether the libMesh mesh was prepared. This should really only be relevant in MOOSE framework contexts where we need to make a decision about what to do with the displaced mesh. If the reference mesh base object has prepare_for_use called (e.g. this method returns true when called for the reference mesh), then we must pass the reference mesh base object into this method when we call this for the displaced mesh. This is because the displaced mesh must be an exact clone of the reference mesh. We have seen that prepare_for_use called on two previously identical meshes can result in two different meshes even with Metis partitioning

Definition at line 406 of file MooseMesh.C.

407 {
408  TIME_SECTION("prepare", 2, "Preparing Mesh", true);
409 
410  bool called_prepare_for_use = false;
411 
412  mooseAssert(_mesh, "The MeshBase has not been constructed");
413 
414  if (!dynamic_cast<DistributedMesh *>(&getMesh()) || _is_nemesis)
415  // For whatever reason we do not want to allow renumbering here nor ever in the future?
416  getMesh().allow_renumbering(false);
417 
418  if (mesh_to_clone)
419  {
420  mooseAssert(mesh_to_clone->is_prepared(),
421  "The mesh we wish to clone from must already be prepared");
422  _mesh = mesh_to_clone->clone();
423  _moose_mesh_prepared = false;
424  }
425  else if (!_mesh->is_prepared())
426  {
427  _mesh->prepare_for_use();
428  _moose_mesh_prepared = false;
429  called_prepare_for_use = true;
430  }
431 
433  return called_prepare_for_use;
434 
435  // Collect (local) subdomain IDs
436  _mesh_subdomains.clear();
437  for (const auto & elem : getMesh().element_ptr_range())
439 
440  // add explicitly requested subdomains
441  if (isParamValid("add_subdomain_ids") && !isParamValid("add_subdomain_names"))
442  {
443  // only subdomain ids are explicitly given
444  const auto & add_subdomain_id = getParam<std::vector<SubdomainID>>("add_subdomain_ids");
445  _mesh_subdomains.insert(add_subdomain_id.begin(), add_subdomain_id.end());
446  }
447  else if (isParamValid("add_subdomain_ids") && isParamValid("add_subdomain_names"))
448  {
449  const auto add_subdomain =
450  getParam<SubdomainID, SubdomainName>("add_subdomain_ids", "add_subdomain_names");
451  for (const auto & [sub_id, sub_name] : add_subdomain)
452  {
453  // add subdomain id
454  _mesh_subdomains.insert(sub_id);
455  // set name of the subdomain just added
456  setSubdomainName(sub_id, sub_name);
457  }
458  }
459  else if (isParamValid("add_subdomain_names"))
460  {
461  // the user has defined add_subdomain_names, but not add_subdomain_ids
462  const auto & add_subdomain_names = getParam<std::vector<SubdomainName>>("add_subdomain_names");
463 
464  // to define subdomain ids, we need the largest subdomain id defined yet.
465  subdomain_id_type offset = 0;
466  if (!_mesh_subdomains.empty())
467  offset = *_mesh_subdomains.rbegin();
468 
469  // add all subdomains (and auto-assign ids)
470  for (const SubdomainName & sub_name : add_subdomain_names)
471  {
472  // to avoid two subdomains with the same ID (notably on recover)
474  continue;
475  const auto sub_id = ++offset;
476  // add subdomain id
477  _mesh_subdomains.insert(sub_id);
478  // set name of the subdomain just added
479  setSubdomainName(sub_id, sub_name);
480  }
481  }
482 
483  // Make sure nodesets have been generated
485 
486  // Collect (local) boundary IDs
487  const std::set<BoundaryID> & local_bids = getMesh().get_boundary_info().get_boundary_ids();
488  _mesh_boundary_ids.insert(local_bids.begin(), local_bids.end());
489 
490  const std::set<BoundaryID> & local_node_bids =
492  _mesh_nodeset_ids.insert(local_node_bids.begin(), local_node_bids.end());
493 
494  const std::set<BoundaryID> & local_side_bids =
496  _mesh_sideset_ids.insert(local_side_bids.begin(), local_side_bids.end());
497 
498  // Add explicitly requested sidesets/nodesets
499  // This is done *after* the side boundaries (e.g. "right", ...) have been generated.
500  auto add_sets = [this](const bool sidesets, auto & set_ids)
501  {
502  const std::string type = sidesets ? "sideset" : "nodeset";
503  const std::string id_param = "add_" + type + "_ids";
504  const std::string name_param = "add_" + type + "_names";
505 
506  if (isParamValid(id_param))
507  {
508  const auto & add_ids = getParam<std::vector<BoundaryID>>(id_param);
509  _mesh_boundary_ids.insert(add_ids.begin(), add_ids.end());
510  set_ids.insert(add_ids.begin(), add_ids.end());
511  if (isParamValid(name_param))
512  {
513  const auto & add_names = getParam<std::vector<BoundaryName>>(name_param);
514  mooseAssert(add_names.size() == add_ids.size(),
515  "Id and name sets must be the same size when adding.");
516  for (const auto i : index_range(add_ids))
517  setBoundaryName(add_ids[i], add_names[i]);
518  }
519  }
520  else if (isParamValid(name_param))
521  {
522  // the user has defined names, but not ids
523  const auto & add_names = getParam<std::vector<BoundaryName>>(name_param);
524 
525  auto & mesh_ids = sidesets ? _mesh_sideset_ids : _mesh_nodeset_ids;
526 
527  // to define ids, we need the largest id defined yet.
528  boundary_id_type offset = 0;
529  if (!mesh_ids.empty())
530  offset = *mesh_ids.rbegin();
531  if (!_mesh_boundary_ids.empty())
532  offset = std::max(offset, *_mesh_boundary_ids.rbegin());
533 
534  // add all sidesets/nodesets (and auto-assign ids)
535  for (const auto & name : add_names)
536  {
537  // to avoid two sets with the same ID (notably on recover)
539  continue;
540  const auto id = ++offset;
541  // add sideset id
542  _mesh_boundary_ids.insert(id);
543  set_ids.insert(id);
544  // set name of the sideset just added
545  setBoundaryName(id, name);
546  }
547  }
548  };
549 
550  add_sets(true, _mesh_sideset_ids);
551  add_sets(false, _mesh_nodeset_ids);
552 
553  // Communicate subdomain and boundary IDs if this is a parallel mesh
554  if (!getMesh().is_serial())
555  {
560  }
561 
563  {
564  if (!_coord_system_set)
565  setCoordSystem(_provided_coord_blocks, getParam<MultiMooseEnum>("coord_type"));
566  else if (_pars.isParamSetByUser("coord_type"))
567  mooseError(
568  "Trying to set coordinate system type information based on the user input file, but "
569  "the coordinate system type information has already been set programmatically! "
570  "Either remove your coordinate system type information from the input file, or contact "
571  "your application developer");
572  }
573 
574  // Set general axisymmetric axes if provided
575  if (isParamValid("rz_coord_blocks") && isParamValid("rz_coord_origins") &&
576  isParamValid("rz_coord_directions"))
577  {
578  const auto rz_coord_blocks = getParam<std::vector<SubdomainName>>("rz_coord_blocks");
579  const auto rz_coord_origins = getParam<std::vector<Point>>("rz_coord_origins");
580  const auto rz_coord_directions = getParam<std::vector<RealVectorValue>>("rz_coord_directions");
581  if (rz_coord_origins.size() == rz_coord_blocks.size() &&
582  rz_coord_directions.size() == rz_coord_blocks.size())
583  {
584  std::vector<std::pair<Point, RealVectorValue>> rz_coord_axes;
585  for (unsigned int i = 0; i < rz_coord_origins.size(); ++i)
586  rz_coord_axes.push_back(std::make_pair(rz_coord_origins[i], rz_coord_directions[i]));
587 
588  setGeneralAxisymmetricCoordAxes(rz_coord_blocks, rz_coord_axes);
589 
590  if (isParamSetByUser("rz_coord_axis"))
591  mooseError("The parameter 'rz_coord_axis' may not be provided if 'rz_coord_blocks', "
592  "'rz_coord_origins', and 'rz_coord_directions' are provided.");
593  }
594  else
595  mooseError("The parameters 'rz_coord_blocks', 'rz_coord_origins', and "
596  "'rz_coord_directions' must all have the same size.");
597  }
598  else if (isParamValid("rz_coord_blocks") || isParamValid("rz_coord_origins") ||
599  isParamValid("rz_coord_directions"))
600  mooseError("If any of the parameters 'rz_coord_blocks', 'rz_coord_origins', and "
601  "'rz_coord_directions' are provided, then all must be provided.");
602 
604 
605  update();
606 
607  // Check if there is subdomain name duplication for the same subdomain ID
609 
610  _moose_mesh_prepared = true;
611 
612  return called_prepare_for_use;
613 }
const std::set< boundary_id_type > & get_side_boundary_ids() const
bool _is_nemesis
True if a Nemesis Mesh was read in.
Definition: MooseMesh.h:1469
std::vector< SubdomainName > _provided_coord_blocks
Set for holding user-provided coordinate system type block names.
Definition: MooseMesh.h:1874
bool is_prepared() const
void checkDuplicateSubdomainNames()
Loop through all subdomain IDs and check if there is name duplication used for the subdomains with sa...
Definition: MooseMesh.C:4306
void allow_renumbering(bool allow)
const BoundaryID INVALID_BOUNDARY_ID
Definition: MooseTypes.C:22
const Parallel::Communicator & _communicator
const BoundaryInfo & get_boundary_info() const
virtual std::unique_ptr< MeshBase > clone() const=0
virtual const std::string & name() const
Get the name of the class.
Definition: MooseBase.h:57
void buildNodeListFromSideList()
Calls BoundaryInfo::build_node_list_from_side_list().
Definition: MooseMesh.C:2978
auto max(const L &left, const R &right)
bool isParamValid(const std::string &name) const
Test if the supplied parameter is valid.
const std::set< boundary_id_type > & get_node_boundary_ids() const
static const subdomain_id_type invalid_subdomain_id
bool _built_from_other_mesh
Whether or not this mesh was built from another mesh.
Definition: MooseMesh.h:1419
int8_t boundary_id_type
void setSubdomainName(SubdomainID subdomain_id, const SubdomainName &name)
This method sets the name for subdomain_id to name.
Definition: MooseMesh.C:1746
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
void update()
Calls buildNodeListFromSideList(), buildNodeList(), and buildBndElemList().
Definition: MooseMesh.C:616
const std::string & type() const
Get the type of this class.
Definition: MooseBase.h:51
std::set< BoundaryID > _mesh_nodeset_ids
Definition: MooseMesh.h:1526
void setCoordSystem(const std::vector< SubdomainName > &blocks, const MultiMooseEnum &coord_sys)
Set the coordinate system for the provided blocks to coord_sys.
Definition: MooseMesh.C:4076
std::set< BoundaryID > _mesh_boundary_ids
A set of boundary IDs currently present in the mesh.
Definition: MooseMesh.h:1524
bool _moose_mesh_prepared
True if prepare has been called on the mesh.
Definition: MooseMesh.h:1472
bool _coord_system_set
Whether the coordinate system has been set.
Definition: MooseMesh.h:1871
const std::set< boundary_id_type > & get_boundary_ids() const
bool isParamSetByUser(const std::string &name) const
Method returns true if the parameter was by the user.
void setBoundaryName(BoundaryID boundary_id, BoundaryName name)
This method sets the boundary name of the boundary based on the id parameter.
Definition: MooseMesh.C:1775
bool isParamSetByUser(const std::string &nm) const
Test if the supplied parameter is set by a user, as opposed to not set or set to default.
std::set< BoundaryID > _mesh_sideset_ids
Definition: MooseMesh.h:1525
void setGeneralAxisymmetricCoordAxes(const std::vector< SubdomainName > &blocks, const std::vector< std::pair< Point, RealVectorValue >> &axes)
Sets the general coordinate axes for axisymmetric blocks.
Definition: MooseMesh.C:4190
bool detectOrthogonalDimRanges(Real tol=1e-6)
This routine determines whether the Mesh is a regular orthogonal mesh (i.e.
Definition: MooseMesh.C:1920
subdomain_id_type subdomain_id() const
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1433
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.
const InputParameters & _pars
Parameters of this object, references the InputParameters stored in the InputParametersWarehouse.
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094
std::set< SubdomainID > _mesh_subdomains
A set of subdomain IDs currently present in the mesh.
Definition: MooseMesh.h:1516
auto index_range(const T &sizable)
BoundaryID getBoundaryID(const BoundaryName &boundary_name) const
Get the associated BoundaryID for the boundary name.
Definition: MooseMesh.C:1689
SubdomainID getSubdomainID(const SubdomainName &subdomain_name) const
Get the associated subdomain ID for the subdomain name.
Definition: MooseMesh.C:1728
void set_union(T &data, const unsigned int root_id) const

◆ prepared() [1/2]

bool MooseMesh::prepared ( ) const

Setter/getter for whether the mesh is prepared.

Definition at line 3132 of file MooseMesh.C.

Referenced by needsPrepareForUse(), GeneratedMesh::prepared(), and AnnularMesh::prepared().

3133 {
3134  return _mesh->is_prepared() && _moose_mesh_prepared;
3135 }
bool _moose_mesh_prepared
True if prepare has been called on the mesh.
Definition: MooseMesh.h:1472
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1433

◆ prepared() [2/2]

void MooseMesh::prepared ( bool  state)
virtual

If we are explicitly setting the mesh to not prepared, then we've likely modified the mesh and can no longer make assumptions about orthogonality. We really should recheck.

Reimplemented in AnnularMesh, and GeneratedMesh.

Definition at line 3138 of file MooseMesh.C.

3139 {
3140  if (state)
3141  mooseError("We don't have any right to tell the libmesh mesh that it *is* prepared. Only a "
3142  "call to prepare_for_use should tell us that");
3143 
3144  // Some people may call this even before we have a MeshBase object. This isn't dangerous really
3145  // because when the MeshBase object is born, it knows it's in an unprepared state
3146  if (_mesh)
3147  _mesh->set_isnt_prepared();
3148 
3149  // If the libMesh mesh isn't preparead, then our MooseMesh wrapper is also no longer prepared
3150  _moose_mesh_prepared = false;
3151 
3156  _regular_orthogonal_mesh = false;
3157 }
bool _moose_mesh_prepared
True if prepare has been called on the mesh.
Definition: MooseMesh.h:1472
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1433
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.
bool _regular_orthogonal_mesh
Boolean indicating whether this mesh was detected to be regular and orthogonal.
Definition: MooseMesh.h:1577

◆ printInfo()

void MooseMesh::printInfo ( std::ostream &  os = libMesh::out,
const unsigned int  verbosity = 0 
) const

Calls print_info() on the underlying Mesh.

Definition at line 3457 of file MooseMesh.C.

Referenced by Adaptivity::adaptMesh().

3458 {
3459  os << '\n';
3460  getMesh().print_info(os, verbosity);
3461  os << std::flush;
3462 }
std::basic_ostream< charT, traits > * os
Definition: InfixIterator.h:33
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
void print_info(std::ostream &os=libMesh::out, const unsigned int verbosity=0, const bool global=true) const

◆ queryElemPtr() [1/2]

Elem * MooseMesh::queryElemPtr ( const dof_id_type  i)
virtual

Definition at line 3120 of file MooseMesh.C.

Referenced by PointSamplerBase::getLocalElemContainingPoint(), NodePositions::initialize(), ElementalVariableValue::initialSetup(), DisplacedProblem::reinitElemPhys(), FEProblemBase::reinitElemPhys(), and EqualValueBoundaryConstraint::updateConstrainedNodes().

3121 {
3122  return getMesh().query_elem_ptr(i);
3123 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
virtual const Elem * query_elem_ptr(const dof_id_type i) const=0

◆ queryElemPtr() [2/2]

const Elem * MooseMesh::queryElemPtr ( const dof_id_type  i) const
virtual

Definition at line 3126 of file MooseMesh.C.

3127 {
3128  return getMesh().query_elem_ptr(i);
3129 }
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
virtual const Elem * query_elem_ptr(const dof_id_type i) const=0

◆ queryNodePtr() [1/2]

const Node * MooseMesh::queryNodePtr ( const dof_id_type  i) const
virtual

Definition at line 857 of file MooseMesh.C.

Referenced by NonlinearSystemBase::findImplicitGeometricCouplingEntries(), NodePositions::initialize(), nodeRef(), queryNodePtr(), and EqualValueBoundaryConstraint::updateConstrainedNodes().

858 {
859  if (i > getMesh().max_node_id())
860  {
861  auto it = _quadrature_nodes.find(i);
862  if (it == _quadrature_nodes.end())
863  return nullptr;
864  auto & node_ptr = it->second;
865  mooseAssert(node_ptr, "Uninitialized quadrature node");
866  return node_ptr;
867  }
868 
869  return getMesh().query_node_ptr(i);
870 }
std::map< dof_id_type, Node * > _quadrature_nodes
Definition: MooseMesh.h:1547
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
virtual const Node * query_node_ptr(const dof_id_type i) const=0

◆ queryNodePtr() [2/2]

Node * MooseMesh::queryNodePtr ( const dof_id_type  i)
virtual

Definition at line 873 of file MooseMesh.C.

874 {
875  return const_cast<Node *>(const_cast<const MooseMesh *>(this)->queryNodePtr(i));
876 }
virtual const Node * queryNodePtr(const dof_id_type i) const
Definition: MooseMesh.C:857
MooseMesh wraps a libMesh::Mesh object and enhances its capabilities by caching additional data and s...
Definition: MooseMesh.h:88

◆ queryParam()

template<typename T >
const T * MooseBaseParameterInterface::queryParam ( const std::string &  name) const
inherited

Query a parameter for the object.

If the parameter is not valid, nullptr will be returned

Parameters
nameThe name of the parameter
Returns
A pointer to the parameter value, if it exists

Definition at line 222 of file MooseBaseParameterInterface.h.

223 {
224  return isParamValid(name) ? &getParam<T>(name) : nullptr;
225 }
std::string name(const ElemQuality q)
bool isParamValid(const std::string &name) const
Test if the supplied parameter is valid.

◆ refinedElementRange()

ConstElemPointerRange * MooseMesh::refinedElementRange ( ) const

Return a range that is suitable for threaded execution over elements that were just refined.

Returns
The Parent elements that are now set to be INACTIVE. Their children are the new elements.

Definition at line 928 of file MooseMesh.C.

Referenced by FEProblemBase::meshChanged().

929 {
930  return _refined_elements.get();
931 }
std::unique_ptr< ConstElemPointerRange > _refined_elements
The elements that were just refined.
Definition: MooseMesh.h:1475

◆ registerTimedSection() [1/2]

PerfID PerfGraphInterface::registerTimedSection ( const std::string &  section_name,
const unsigned int  level 
) const
protectedinherited

Call to register a named section for timing.

Parameters
section_nameThe name of the code section to be timed
levelThe importance of the timer - lower is more important (0 will always come out)
Returns
The ID of the section - use when starting timing

Definition at line 53 of file PerfGraphInterface.C.

55 {
56  const auto timed_section_name = timedSectionName(section_name);
57  if (!moose::internal::getPerfGraphRegistry().sectionExists(timed_section_name))
58  return moose::internal::getPerfGraphRegistry().registerSection(timed_section_name, level);
59  else
60  return moose::internal::getPerfGraphRegistry().sectionID(timed_section_name);
61 }
PerfID registerSection(const std::string &section_name, const unsigned int level)
Call to register a named section for timing.
std::string timedSectionName(const std::string &section_name) const
PerfID sectionID(const std::string &section_name) const
Given a name return the PerfID The name of the section.
PerfGraphRegistry & getPerfGraphRegistry()
Get the global PerfGraphRegistry singleton.

◆ registerTimedSection() [2/2]

PerfID PerfGraphInterface::registerTimedSection ( const std::string &  section_name,
const unsigned int  level,
const std::string &  live_message,
const bool  print_dots = true 
) const
protectedinherited

Call to register a named section for timing.

Parameters
section_nameThe name of the code section to be timed
levelThe importance of the timer - lower is more important (0 will always come out)
live_messageThe message to be printed to the screen during execution
print_dotsWhether or not progress dots should be printed for this section
Returns
The ID of the section - use when starting timing

Definition at line 64 of file PerfGraphInterface.C.

68 {
69  const auto timed_section_name = timedSectionName(section_name);
70  if (!moose::internal::getPerfGraphRegistry().sectionExists(timed_section_name))
72  timedSectionName(section_name), level, live_message, print_dots);
73  else
74  return moose::internal::getPerfGraphRegistry().sectionID(timed_section_name);
75 }
PerfID registerSection(const std::string &section_name, const unsigned int level)
Call to register a named section for timing.
std::string timedSectionName(const std::string &section_name) const
PerfID sectionID(const std::string &section_name) const
Given a name return the PerfID The name of the section.
PerfGraphRegistry & getPerfGraphRegistry()
Get the global PerfGraphRegistry singleton.

◆ restartableName()

std::string Restartable::restartableName ( const std::string &  data_name) const
protectedinherited

Gets the name of a piece of restartable data given a data name, adding the system name and object name prefix.

This should only be used in this interface and in testing.

Definition at line 66 of file Restartable.C.

Referenced by Restartable::declareRecoverableData(), and Restartable::declareRestartableDataHelper().

67 {
68  return _restartable_system_name + "/" + _restartable_name + "/" + data_name;
69 }
std::string _restartable_name
The name of the object.
Definition: Restartable.h:243
const std::string _restartable_system_name
The system name this object is in.
Definition: Restartable.h:230

◆ safeClone()

virtual std::unique_ptr<MooseMesh> MooseMesh::safeClone ( ) const
pure virtual

A safer version of the clone() method that hands back an allocated object wrapped in a smart pointer.

This makes it much less likely that the caller will leak the memory in question.

Implemented in MFEMMesh, PatternedMesh, StitchedMesh, MeshGeneratorMesh, AnnularMesh, ConcentricCircleMesh, GeneratedMesh, RinglebMesh, SpiralAnnularMesh, ImageMesh, FileMesh, and TiledMesh.

Referenced by SetupMeshAction::act(), and SampledOutput::cloneMesh().

◆ setAxisymmetricCoordAxis()

void MooseMesh::setAxisymmetricCoordAxis ( const MooseEnum rz_coord_axis)

For axisymmetric simulations, set the symmetry coordinate axis.

For r in the x-direction, z in the y-direction the coordinate axis would be y

Definition at line 4182 of file MooseMesh.C.

Referenced by FEProblemBase::setAxisymmetricCoordAxis().

4183 {
4184  _rz_coord_axis = rz_coord_axis;
4185 
4187 }
void updateCoordTransform()
Update the coordinate transformation object based on our coordinate system data.
Definition: MooseMesh.C:4254
unsigned int _rz_coord_axis
Storage for RZ axis selection.
Definition: MooseMesh.h:1861

◆ setBoundaryName()

void MooseMesh::setBoundaryName ( BoundaryID  boundary_id,
BoundaryName  name 
)

This method sets the boundary name of the boundary based on the id parameter.

Definition at line 1775 of file MooseMesh.C.

Referenced by prepare(), and ActivateElementsUserObjectBase::setNewBoundayName().

1776 {
1777  BoundaryInfo & boundary_info = getMesh().get_boundary_info();
1778 
1779  // We need to figure out if this boundary is a sideset or nodeset
1780  if (boundary_info.get_side_boundary_ids().count(boundary_id))
1781  boundary_info.sideset_name(boundary_id) = name;
1782  else
1783  boundary_info.nodeset_name(boundary_id) = name;
1784 }
const std::set< boundary_id_type > & get_side_boundary_ids() const
std::string & nodeset_name(boundary_id_type id)
const BoundaryInfo & get_boundary_info() const
virtual const std::string & name() const
Get the name of the class.
Definition: MooseBase.h:57
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
std::string & sideset_name(boundary_id_type id)

◆ setBoundaryToNormalMap() [1/2]

void MooseMesh::setBoundaryToNormalMap ( std::unique_ptr< std::map< BoundaryID, RealVectorValue >>  boundary_map)

Sets the mapping between BoundaryID and normal vector Is called by AddAllSideSetsByNormals.

Definition at line 3196 of file MooseMesh.C.

3198 {
3199  _boundary_to_normal_map = std::move(boundary_map);
3200 }
std::unique_ptr< std::map< BoundaryID, RealVectorValue > > _boundary_to_normal_map
The boundary to normal map - valid only when AddAllSideSetsByNormals is active.
Definition: MooseMesh.h:1530

◆ setBoundaryToNormalMap() [2/2]

void MooseMesh::setBoundaryToNormalMap ( std::map< BoundaryID, RealVectorValue > *  boundary_map)

Definition at line 3203 of file MooseMesh.C.

3204 {
3205  mooseDeprecated("setBoundaryToNormalMap(std::map<BoundaryID, RealVectorValue> * boundary_map) is "
3206  "deprecated, use the unique_ptr version instead");
3207  _boundary_to_normal_map.reset(boundary_map);
3208 }
void mooseDeprecated(Args &&... args) const
std::unique_ptr< std::map< BoundaryID, RealVectorValue > > _boundary_to_normal_map
The boundary to normal map - valid only when AddAllSideSetsByNormals is active.
Definition: MooseMesh.h:1530

◆ setCoordData()

void MooseMesh::setCoordData ( const MooseMesh other_mesh)

Set the coordinate system data to that of other_mesh.

Definition at line 4291 of file MooseMesh.C.

Referenced by DisplacedProblem::DisplacedProblem().

4292 {
4293  _coord_sys = other_mesh._coord_sys;
4294  _rz_coord_axis = other_mesh._rz_coord_axis;
4296 }
std::map< SubdomainID, Moose::CoordinateSystemType > & _coord_sys
Type of coordinate system per subdomain.
Definition: MooseMesh.h:1858
std::unordered_map< SubdomainID, std::pair< Point, RealVectorValue > > _subdomain_id_to_rz_coord_axis
Map of subdomain ID to general axisymmetric axis.
Definition: MooseMesh.h:1864
unsigned int _rz_coord_axis
Storage for RZ axis selection.
Definition: MooseMesh.h:1861

◆ setCoordSystem()

void MooseMesh::setCoordSystem ( const std::vector< SubdomainName > &  blocks,
const MultiMooseEnum coord_sys 
)

Set the coordinate system for the provided blocks to coord_sys.

Definition at line 4076 of file MooseMesh.C.

Referenced by prepare(), and FEProblemBase::setCoordSystem().

4078 {
4079  TIME_SECTION("setCoordSystem", 5, "Setting Coordinate System");
4081  {
4082  const std::string param_name = isParamValid("coord_block") ? "coord_block" : "block";
4083  mooseWarning("Supplied blocks in the 'setCoordSystem' method do not match the value of the "
4084  "'Mesh/",
4085  param_name,
4086  "' parameter. Did you provide different parameter values for 'Mesh/",
4087  param_name,
4088  "' and 'Problem/block'?. We will honor the parameter value from 'Mesh/",
4089  param_name,
4090  "'");
4091  mooseAssert(_coord_system_set,
4092  "If we are arriving here due to a bad specification in the Problem block, then we "
4093  "should have already set our coordinate system subdomains from the Mesh block");
4094  return;
4095  }
4096  if (_pars.isParamSetByUser("coord_type") && getParam<MultiMooseEnum>("coord_type") != coord_sys)
4097  mooseError("Supplied coordinate systems in the 'setCoordSystem' method do not match the value "
4098  "of the 'Mesh/coord_type' parameter. Did you provide different parameter values for "
4099  "'coord_type' to 'Mesh' and 'Problem'?");
4100 
4101  auto subdomains = meshSubdomains();
4102  // It's possible that a user has called this API before the mesh is prepared and consequently we
4103  // don't yet have the subdomains in meshSubdomains()
4104  for (const auto & sub_name : blocks)
4105  {
4106  const auto sub_id = getSubdomainID(sub_name);
4107  subdomains.insert(sub_id);
4108  }
4109 
4110  if (coord_sys.size() <= 1)
4111  {
4112  // We will specify the same coordinate system for all blocks
4113  const auto coord_type = coord_sys.size() == 0
4115  : Moose::stringToEnum<Moose::CoordinateSystemType>(coord_sys[0]);
4116  for (const auto sid : subdomains)
4117  _coord_sys[sid] = coord_type;
4118  }
4119  else
4120  {
4121  if (blocks.size() != coord_sys.size())
4122  mooseError("Number of blocks and coordinate systems does not match.");
4123 
4124  for (const auto i : index_range(blocks))
4125  {
4126  SubdomainID sid = getSubdomainID(blocks[i]);
4127  Moose::CoordinateSystemType coord_type =
4128  Moose::stringToEnum<Moose::CoordinateSystemType>(coord_sys[i]);
4129  _coord_sys[sid] = coord_type;
4130  }
4131 
4132  for (const auto & sid : subdomains)
4133  if (_coord_sys.find(sid) == _coord_sys.end())
4134  mooseError("Subdomain '" + Moose::stringify(sid) +
4135  "' does not have a coordinate system specified.");
4136  }
4137 
4138  _coord_system_set = true;
4139 
4141 }
std::vector< SubdomainName > _provided_coord_blocks
Set for holding user-provided coordinate system type block names.
Definition: MooseMesh.h:1874
char ** blocks
std::map< SubdomainID, Moose::CoordinateSystemType > & _coord_sys
Type of coordinate system per subdomain.
Definition: MooseMesh.h:1858
unsigned int size() const
Return the number of active items in the MultiMooseEnum.
void mooseWarning(Args &&... args) const
Emits a warning prefixed with object name and type.
bool isParamValid(const std::string &name) const
Test if the supplied parameter is valid.
void updateCoordTransform()
Update the coordinate transformation object based on our coordinate system data.
Definition: MooseMesh.C:4254
std::string stringify(const T &t)
conversion to string
Definition: Conversion.h:64
bool _coord_system_set
Whether the coordinate system has been set.
Definition: MooseMesh.h:1871
bool isParamSetByUser(const std::string &name) const
Method returns true if the parameter was by the user.
CoordinateSystemType
Definition: MooseTypes.h:809
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.
const InputParameters & _pars
Parameters of this object, references the InputParameters stored in the InputParametersWarehouse.
auto index_range(const T &sizable)
const std::set< SubdomainID > & meshSubdomains() const
Returns a read-only reference to the set of subdomains currently present in the Mesh.
Definition: MooseMesh.C:3166
SubdomainID getSubdomainID(const SubdomainName &subdomain_name) const
Get the associated subdomain ID for the subdomain name.
Definition: MooseMesh.C:1728

◆ setCustomPartitioner()

void MooseMesh::setCustomPartitioner ( libMesh::Partitioner partitioner)

Setter for custom partitioner.

Definition at line 3694 of file MooseMesh.C.

3695 {
3696  _custom_partitioner = partitioner->clone();
3697 }
virtual std::unique_ptr< Partitioner > clone() const=0
std::unique_ptr< libMesh::Partitioner > _custom_partitioner
The custom partitioner.
Definition: MooseMesh.h:1440

◆ setGeneralAxisymmetricCoordAxes()

void MooseMesh::setGeneralAxisymmetricCoordAxes ( const std::vector< SubdomainName > &  blocks,
const std::vector< std::pair< Point, RealVectorValue >> &  axes 
)

Sets the general coordinate axes for axisymmetric blocks.

This method must be used if any of the following are true:

  • There are multiple axisymmetric coordinate systems
  • Any axisymmetric coordinate system axis/direction is not the +X or +Y axis
  • Any axisymmetric coordinate system does not start at (0,0,0)
Parameters
[in]blocksSubdomain names
[in]axesPair of values defining the axisymmetric coordinate axis for each subdomain. The first value is the point on the axis corresponding to the origin. The second value is the direction vector of the axis (normalization not necessary).

Definition at line 4190 of file MooseMesh.C.

Referenced by prepare().

4193 {
4194  // Set the axes for the given blocks
4195  mooseAssert(blocks.size() == axes.size(), "Blocks and axes vectors must be the same length.");
4196  for (const auto i : index_range(blocks))
4197  {
4198  const auto subdomain_id = getSubdomainID(blocks[i]);
4199  const auto it = _coord_sys.find(subdomain_id);
4200  if (it == _coord_sys.end())
4201  mooseError("The block '",
4202  blocks[i],
4203  "' has not set a coordinate system. Make sure to call setCoordSystem() before "
4204  "setGeneralAxisymmetricCoordAxes().");
4205  else
4206  {
4207  if (it->second == Moose::COORD_RZ)
4208  {
4209  const auto direction = axes[i].second;
4210  if (direction.is_zero())
4211  mooseError("Only nonzero vectors may be supplied for RZ directions.");
4212 
4213  _subdomain_id_to_rz_coord_axis[subdomain_id] =
4214  std::make_pair(axes[i].first, direction.unit());
4215  }
4216  else
4217  mooseError("The block '",
4218  blocks[i],
4219  "' was provided in setGeneralAxisymmetricCoordAxes(), but the coordinate system "
4220  "for this block is not 'RZ'.");
4221  }
4222  }
4223 
4224  // Make sure there are no RZ blocks that still do not have axes
4225  const auto all_subdomain_ids = meshSubdomains();
4226  for (const auto subdomain_id : all_subdomain_ids)
4227  if (getCoordSystem(subdomain_id) == Moose::COORD_RZ &&
4228  !_subdomain_id_to_rz_coord_axis.count(subdomain_id))
4229  mooseError("The block '",
4230  getSubdomainName(subdomain_id),
4231  "' was specified to use the 'RZ' coordinate system but was not given in "
4232  "setGeneralAxisymmetricCoordAxes().");
4233 
4235 }
char ** blocks
std::map< SubdomainID, Moose::CoordinateSystemType > & _coord_sys
Type of coordinate system per subdomain.
Definition: MooseMesh.h:1858
const std::string & getSubdomainName(SubdomainID subdomain_id) const
Return the name of a block given an id.
Definition: MooseMesh.C:1758
void updateCoordTransform()
Update the coordinate transformation object based on our coordinate system data.
Definition: MooseMesh.C:4254
const std::map< SubdomainID, Moose::CoordinateSystemType > & getCoordSystem() const
Get the map from subdomain ID to coordinate system type, e.g.
Definition: MooseMesh.C:4176
void mooseError(Args &&... args) const
Emits an error prefixed with object name and type.
std::unordered_map< SubdomainID, std::pair< Point, RealVectorValue > > _subdomain_id_to_rz_coord_axis
Map of subdomain ID to general axisymmetric axis.
Definition: MooseMesh.h:1864
auto index_range(const T &sizable)
const std::set< SubdomainID > & meshSubdomains() const
Returns a read-only reference to the set of subdomains currently present in the Mesh.
Definition: MooseMesh.C:3166
SubdomainID getSubdomainID(const SubdomainName &subdomain_name) const
Get the associated subdomain ID for the subdomain name.
Definition: MooseMesh.C:1728

◆ setGhostedBoundaryInflation()

void MooseMesh::setGhostedBoundaryInflation ( const std::vector< Real > &  inflation)

This sets the inflation amount for the bounding box for each partition for use in ghosting boundaries.

Definition at line 3230 of file MooseMesh.C.

3231 {
3232  _ghosted_boundaries_inflation = inflation;
3233 }
std::vector< Real > _ghosted_boundaries_inflation
Definition: MooseMesh.h:1559

◆ setIsCustomPartitionerRequested()

void MooseMesh::setIsCustomPartitionerRequested ( bool  cpr)

Definition at line 3722 of file MooseMesh.C.

3723 {
3725 }
bool _custom_partitioner_requested
Definition: MooseMesh.h:1441

◆ setMeshBase()

void MooseMesh::setMeshBase ( std::unique_ptr< MeshBase mesh_base)

Method to set the mesh_base object.

If this method is NOT called prior to calling init(), a MeshBase object will be automatically constructed and set.

Definition at line 2863 of file MooseMesh.C.

2864 {
2865  _mesh = std::move(mesh_base);
2866  _mesh->allow_remote_element_removal(_allow_remote_element_removal);
2867 }
bool _allow_remote_element_removal
Whether to allow removal of remote elements.
Definition: MooseMesh.h:1828
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1433

◆ setMeshBoundaryIDs()

void MooseMesh::setMeshBoundaryIDs ( std::set< BoundaryID boundary_IDs)

Sets the set of BoundaryIDs Is called by AddAllSideSetsByNormals.

Definition at line 3190 of file MooseMesh.C.

3191 {
3192  _mesh_boundary_ids = boundary_IDs;
3193 }
std::set< BoundaryID > _mesh_boundary_ids
A set of boundary IDs currently present in the mesh.
Definition: MooseMesh.h:1524

◆ setParallelType()

void MooseMesh::setParallelType ( ParallelType  parallel_type)
inline

Allow to change parallel type.

Definition at line 2144 of file MooseMesh.h.

Referenced by buildTypedMesh().

2145 {
2146  _parallel_type = parallel_type;
2148 }
ParallelType _parallel_type
Can be set to DISTRIBUTED, REPLICATED, or DEFAULT.
Definition: MooseMesh.h:1423
void determineUseDistributedMesh()
Determine whether to use a distributed mesh.
Definition: MooseMesh.C:2823

◆ setPartitioner()

void MooseMesh::setPartitioner ( MeshBase mesh_base,
MooseEnum partitioner,
bool  use_distributed_mesh,
const InputParameters params,
MooseObject context_obj 
)
static

Method for setting the partitioner on the passed in mesh_base object.

Definition at line 3635 of file MooseMesh.C.

Referenced by setPartitionerHelper().

3640 {
3641  // Set the partitioner based on partitioner name
3642  switch (partitioner)
3643  {
3644  case -3: // default
3645  // We'll use the default partitioner, but notify the user of which one is being used...
3646  if (use_distributed_mesh)
3647  partitioner = "parmetis";
3648  else
3649  partitioner = "metis";
3650  break;
3651 
3652  // No need to explicitily create the metis or parmetis partitioners,
3653  // They are the default for serial and parallel mesh respectively
3654  case -2: // metis
3655  case -1: // parmetis
3656  break;
3657 
3658  case 0: // linear
3659  mesh_base.partitioner().reset(new libMesh::LinearPartitioner);
3660  break;
3661  case 1: // centroid
3662  {
3663  if (!params.isParamValid("centroid_partitioner_direction"))
3664  context_obj.paramError(
3665  "centroid_partitioner_direction",
3666  "If using the centroid partitioner you _must_ specify centroid_partitioner_direction!");
3667 
3668  MooseEnum direction = params.get<MooseEnum>("centroid_partitioner_direction");
3669 
3670  if (direction == "x")
3671  mesh_base.partitioner().reset(
3673  else if (direction == "y")
3674  mesh_base.partitioner().reset(
3676  else if (direction == "z")
3677  mesh_base.partitioner().reset(
3679  else if (direction == "radial")
3680  mesh_base.partitioner().reset(
3682  break;
3683  }
3684  case 2: // hilbert_sfc
3685  mesh_base.partitioner().reset(new libMesh::HilbertSFCPartitioner);
3686  break;
3687  case 3: // morton_sfc
3688  mesh_base.partitioner().reset(new libMesh::MortonSFCPartitioner);
3689  break;
3690  }
3691 }
std::vector< std::pair< R1, R2 > > get(const std::string &param1, const std::string &param2) const
Combine two vector parameters into a single vector of pairs.
virtual std::unique_ptr< Partitioner > & partitioner()
This is a "smart" enum class intended to replace many of the shortcomings in the C++ enum type It sho...
Definition: MooseEnum.h:33
void paramError(const std::string &param, Args... args) const
Emits an error prefixed with the file and line number of the given param (from the input file) along ...
bool isParamValid(const std::string &name) const
This method returns parameters that have been initialized in one fashion or another, i.e.

◆ setPartitionerHelper()

void MooseMesh::setPartitionerHelper ( MeshBase mesh = nullptr)
protected

Definition at line 3623 of file MooseMesh.C.

Referenced by buildTypedMesh().

3624 {
3625  if (_use_distributed_mesh && (_partitioner_name != "default" && _partitioner_name != "parmetis"))
3626  {
3627  _partitioner_name = "parmetis";
3628  _partitioner_overridden = true;
3629  }
3630 
3632 }
static void setPartitioner(MeshBase &mesh_base, MooseEnum &partitioner, bool use_distributed_mesh, const InputParameters &params, MooseObject &context_obj)
Method for setting the partitioner on the passed in mesh_base object.
Definition: MooseMesh.C:3635
MooseEnum _partitioner_name
The partitioner used on this mesh.
Definition: MooseMesh.h:1436
bool _use_distributed_mesh
False by default.
Definition: MooseMesh.h:1428
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
bool _partitioner_overridden
Definition: MooseMesh.h:1437
const InputParameters & _pars
Parameters of this object, references the InputParameters stored in the InputParametersWarehouse.

◆ setPatchUpdateStrategy()

void MooseMesh::setPatchUpdateStrategy ( Moose::PatchUpdateType  patch_update_strategy)

Set the patch size update strategy.

Definition at line 3402 of file MooseMesh.C.

3403 {
3404  _patch_update_strategy = patch_update_strategy;
3405 }
Moose::PatchUpdateType _patch_update_strategy
The patch update strategy.
Definition: MooseMesh.h:1571

◆ setSubdomainName() [1/2]

void MooseMesh::setSubdomainName ( SubdomainID  subdomain_id,
const SubdomainName &  name 
)

This method sets the name for subdomain_id to name.

Definition at line 1746 of file MooseMesh.C.

Referenced by MooseMesh(), and prepare().

1747 {
1748  getMesh().subdomain_name(subdomain_id) = name;
1749 }
virtual const std::string & name() const
Get the name of the class.
Definition: MooseBase.h:57
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
std::string & subdomain_name(subdomain_id_type id)

◆ setSubdomainName() [2/2]

static void MooseMesh::setSubdomainName ( MeshBase &  mesh,
SubdomainID  subdomain_id,
const SubdomainName &  name 
)
static

This method sets the name for subdomain_id on the provided mesh to name.

◆ setUniformRefineLevel()

void MooseMesh::setUniformRefineLevel ( unsigned int  level,
bool  deletion = true 
)

Set uniform refinement level.

Definition at line 3217 of file MooseMesh.C.

3218 {
3219  _uniform_refine_level = level;
3221 }
unsigned int _uniform_refine_level
The level of uniform refinement requested (set to zero if AMR is disabled)
Definition: MooseMesh.h:1457
bool _skip_deletion_repartition_after_refine
Whether or not skip remote deletion and repartition after uniform refinements.
Definition: MooseMesh.h:1463

◆ setupFiniteVolumeMeshData()

void MooseMesh::setupFiniteVolumeMeshData ( ) const

Sets up the additional data needed for finite volume computations.

This involves building FaceInfo and ElemInfo objects, caching variable associations and elemental DoF indices for FV variables.

Definition at line 4067 of file MooseMesh.C.

Referenced by DisplacedProblem::init(), FEProblemBase::init(), FEProblemBase::meshChanged(), and DisplacedProblem::updateMesh().

4068 {
4073 }
void cacheFVElementalDoFs() const
Cache the DoF indices for FV variables on each element.
Definition: MooseMesh.C:4014
void cacheFaceInfoVariableOwnership() const
Cache if variables live on the elements connected by the FaceInfo objects.
Definition: MooseMesh.C:3936
void buildFiniteVolumeInfo() const
Builds the face and elem info vectors that store meta-data needed for looping over and doing calculat...
Definition: MooseMesh.C:3734
void computeFiniteVolumeCoords() const
Compute the face coordinate value for all FaceInfo and ElemInfo objects.
Definition: MooseMesh.C:3872

◆ sideWithBoundaryID()

unsigned int MooseMesh::sideWithBoundaryID ( const Elem *const  elem,
const BoundaryID  boundary_id 
) const

Calls BoundaryInfo::side_with_boundary_id().

Definition at line 3016 of file MooseMesh.C.

3017 {
3018  return getMesh().get_boundary_info().side_with_boundary_id(elem, boundary_id);
3019 }
unsigned int side_with_boundary_id(const Elem *const elem, const boundary_id_type boundary_id) const
const BoundaryInfo & get_boundary_info() const
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094

◆ skipDeletionRepartitionAfterRefine()

bool MooseMesh::skipDeletionRepartitionAfterRefine ( ) const
inline

Return a flag indicating whether or not we should skip remote deletion and repartition after uniform refinements.

If the flag is true, uniform refinements will run more efficiently, but at the same time, there might be extra ghosting elements. The number of layers of additional ghosting elements depends on the number of uniform refinement levels. This flag should be used only when you have a "fine enough" coarse mesh and want to refine the mesh by a few levels. Otherwise, it might introduce an unbalanced workload and too large ghosting domain.

Definition at line 2138 of file MooseMesh.h.

2139 {
2141 }
bool _skip_deletion_repartition_after_refine
Whether or not skip remote deletion and repartition after uniform refinements.
Definition: MooseMesh.h:1463

◆ skipNoncriticalPartitioning()

bool MooseMesh::skipNoncriticalPartitioning ( ) const
virtual

Definition at line 4371 of file MooseMesh.C.

4372 {
4373  return _mesh->skip_noncritical_partitioning();
4374 }
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1433

◆ skipPartitioning()

virtual bool MooseMesh::skipPartitioning ( ) const
inlinevirtual

Definition at line 329 of file MooseMesh.h.

329 { return _mesh->skip_partitioning(); }
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1433

◆ skipRefineWhenUseSplit()

bool MooseMesh::skipRefineWhenUseSplit ( ) const
inline

Whether or not skip uniform refinements when using a pre-split mesh.

Definition at line 585 of file MooseMesh.h.

585 { return _skip_refine_when_use_split; }
bool _skip_refine_when_use_split
Whether or not to skip uniform refinements when using a pre-split mesh.
Definition: MooseMesh.h:1460

◆ spatialDimension()

virtual unsigned int MooseMesh::spatialDimension ( ) const
inlinevirtual

Returns MeshBase::spatial_dimension.

Reimplemented in MFEMMesh.

Definition at line 182 of file MooseMesh.h.

182 { return _mesh->spatial_dimension(); }
std::unique_ptr< libMesh::MeshBase > _mesh
Pointer to underlying libMesh mesh object.
Definition: MooseMesh.h:1433

◆ timedSectionName()

std::string PerfGraphInterface::timedSectionName ( const std::string &  section_name) const
protectedinherited
Returns
The name of the timed section with the name section_name.

Optionally adds a prefix if one is defined.

Definition at line 47 of file PerfGraphInterface.C.

Referenced by PerfGraphInterface::registerTimedSection().

48 {
49  return _prefix.empty() ? "" : (_prefix + "::") + section_name;
50 }
const std::string _prefix
A prefix to use for all sections.

◆ type()

const std::string& MooseBase::type ( ) const
inlineinherited

Get the type of this class.

Returns
the name of the type of this class

Definition at line 51 of file MooseBase.h.

Referenced by CreateProblemDefaultAction::act(), SetupDebugAction::act(), MaterialDerivativeTestAction::act(), MaterialOutputAction::act(), FEProblemBase::addAuxArrayVariable(), FEProblemBase::addAuxScalarVariable(), FEProblemBase::addAuxVariable(), FEProblemBase::addConvergence(), FEProblemBase::addDistribution(), MooseApp::addExecutor(), MooseApp::addExecutorParams(), MFEMProblem::addFunction(), FEProblemBase::addFunction(), FEProblemBase::addMeshDivision(), MooseApp::addMeshGenerator(), MeshGenerator::addMeshSubgenerator(), FEProblemBase::addObject(), MFEMProblem::addPostprocessor(), FEProblemBase::addPredictor(), CreateDisplacedProblemAction::addProxyRelationshipManagers(), FEProblemBase::addReporter(), FEProblemBase::addSampler(), FEProblemBase::addTimeIntegrator(), MooseServer::addValuesToList(), DisplacedProblem::addVectorTag(), SubProblem::addVectorTag(), FEProblemBase::advanceMultiApps(), MooseApp::appendMeshGenerator(), AuxKernelTempl< Real >::AuxKernelTempl(), FEProblemBase::backupMultiApps(), BoundaryPreservedMarker::BoundaryPreservedMarker(), DistributedRectilinearMeshGenerator::buildCube(), buildHRefinementAndCoarseningMaps(), buildLowerDMesh(), buildPRefinementAndCoarseningMaps(), PhysicsBase::checkComponentType(), MeshDiagnosticsGenerator::checkNonConformalMeshFromAdaptivity(), ActionComponent::checkRequiredTasks(), PhysicsBase::checkRequiredTasks(), ADDGKernel::computeElemNeighJacobian(), DGKernel::computeElemNeighJacobian(), ElemElemConstraint::computeElemNeighJacobian(), ArrayDGKernel::computeElemNeighJacobian(), ADDGKernel::computeElemNeighResidual(), DGKernel::computeElemNeighResidual(), ElemElemConstraint::computeElemNeighResidual(), ArrayDGKernel::computeElemNeighResidual(), LowerDIntegratedBC::computeLowerDJacobian(), ArrayLowerDIntegratedBC::computeLowerDJacobian(), DGLowerDKernel::computeLowerDJacobian(), ArrayDGLowerDKernel::computeLowerDJacobian(), LowerDIntegratedBC::computeLowerDOffDiagJacobian(), ArrayLowerDIntegratedBC::computeLowerDOffDiagJacobian(), ArrayHFEMDirichletBC::computeLowerDQpJacobian(), ArrayHFEMDiffusion::computeLowerDQpJacobian(), HFEMDirichletBC::computeLowerDQpJacobian(), HFEMDiffusion::computeLowerDQpJacobian(), ArrayHFEMDirichletBC::computeLowerDQpOffDiagJacobian(), HFEMDirichletBC::computeLowerDQpOffDiagJacobian(), ArrayLowerDIntegratedBC::computeLowerDQpOffDiagJacobian(), ArrayDGLowerDKernel::computeLowerDQpOffDiagJacobian(), FEProblemBase::computeMultiAppsDT(), ADDGKernel::computeOffDiagElemNeighJacobian(), DGKernel::computeOffDiagElemNeighJacobian(), ArrayDGKernel::computeOffDiagElemNeighJacobian(), DGLowerDKernel::computeOffDiagLowerDJacobian(), ArrayDGLowerDKernel::computeOffDiagLowerDJacobian(), DGConvection::computeQpJacobian(), ScalarKernel::computeQpJacobian(), InterfaceDiffusion::computeQpJacobian(), ArrayDGDiffusion::computeQpJacobian(), InterfaceReaction::computeQpJacobian(), CoupledTiedValueConstraint::computeQpJacobian(), TiedValueConstraint::computeQpJacobian(), DGDiffusion::computeQpJacobian(), LinearNodalConstraint::computeQpJacobian(), EqualValueBoundaryConstraint::computeQpJacobian(), CoupledTiedValueConstraint::computeQpOffDiagJacobian(), HFEMTestJump::computeQpOffDiagJacobian(), HFEMTrialJump::computeQpOffDiagJacobian(), ArrayDGKernel::computeQpOffDiagJacobian(), ArrayHFEMDiffusion::computeQpResidual(), DGConvection::computeQpResidual(), HFEMDiffusion::computeQpResidual(), ScalarKernel::computeQpResidual(), InterfaceDiffusion::computeQpResidual(), ADMatInterfaceReaction::computeQpResidual(), InterfaceReaction::computeQpResidual(), ADDGAdvection::computeQpResidual(), ArrayDGDiffusion::computeQpResidual(), CoupledTiedValueConstraint::computeQpResidual(), TiedValueConstraint::computeQpResidual(), ADDGDiffusion::computeQpResidual(), DGDiffusion::computeQpResidual(), LinearNodalConstraint::computeQpResidual(), HFEMTrialJump::computeQpResidual(), EqualValueBoundaryConstraint::computeQpResidual(), HFEMTestJump::computeQpResidual(), FEProblemBase::computeSystems(), FEProblemBase::computeUserObjectByName(), FEProblemBase::computeUserObjects(), FEProblemBase::computeUserObjectsInternal(), DisplacedProblem::createQRules(), FEProblemBase::createQRules(), MooseApp::createRecoverablePerfGraph(), DumpObjectsProblem::deduceNecessaryParameters(), DumpObjectsProblem::dumpObjectHelper(), FEProblemBase::duplicateVariableCheck(), ElementGroupCentroidPositions::ElementGroupCentroidPositions(), MooseBase::errorPrefix(), FEProblemBase::execMultiApps(), FEProblemBase::execMultiAppTransfers(), FEProblemBase::execTransfers(), WebServerControl::execute(), SteadyBase::execute(), ActionWarehouse::executeActionsWithAction(), FEProblemBase::finishMultiAppStep(), FVScalarLagrangeMultiplierInterface::FVScalarLagrangeMultiplierInterface(), MooseServer::gatherDocumentReferencesLocations(), LowerDBlockFromSidesetGenerator::generate(), SubdomainPerElementGenerator::generate(), PatternedMeshGenerator::generate(), MeshGenerator::generateInternal(), MultiAppTransfer::getAppInfo(), TransfiniteMeshGenerator::getEdge(), ElementGenerator::getElemType(), MooseServer::getInputLookupDefinitionNodes(), FEProblemBase::getMaterial(), FEProblemBase::getMaterialData(), MaterialOutputAction::getParams(), ReporterData::getReporterInfo(), FEProblemBase::getTransfers(), DisplacedProblem::getVectorTags(), SubProblem::getVectorTags(), CommonOutputAction::hasConsole(), FEProblemBase::hasMultiApps(), AdvancedOutput::hasOutput(), FEProblemBase::incrementMultiAppTStep(), AdvancedOutput::initAvailableLists(), FunctorPositions::initialize(), FunctorTimes::initialize(), MultiAppConservativeTransfer::initialSetup(), LinearFVAdvection::initialSetup(), LinearFVAnisotropicDiffusion::initialSetup(), LinearFVDiffusion::initialSetup(), ArrayDGDiffusion::initQpResidual(), AdvancedOutput::initShowHideLists(), RelationshipManager::isType(), FEProblemBase::logAdd(), MaterialFunctorConverterTempl< T >::MaterialFunctorConverterTempl(), MFEMProblem::mesh(), MooseApp::MooseApp(), MooseObject::MooseObject(), MultiAppMFEMCopyTransfer::MultiAppMFEMCopyTransfer(), DisplacedProblem::numVectorTags(), SubProblem::numVectorTags(), Console::output(), AdvancedOutput::output(), ConsoleUtils::outputExecutionInformation(), SampledOutput::outputStep(), Output::outputStep(), FEProblemBase::outputStep(), MooseServer::parseDocumentForDiagnostics(), prepare(), ProjectedStatefulMaterialStorageAction::processProperty(), MooseApp::recursivelyCreateExecutors(), SolutionInvalidInterface::registerInvalidSolutionInternal(), FEProblemBase::restoreMultiApps(), MeshRepairGenerator::separateSubdomainsByElementType(), FEProblemBase::setCoupling(), MooseApp::setupOptions(), WebServerControl::startServer(), MooseBase::typeAndName(), ScalarKernelBase::uOld(), AuxScalarKernel::uOld(), DisplacedProblem::updateGeomSearch(), FEProblemBase::updateGeomSearch(), UserObjectInterface::userObjectType(), and AdvancedOutput::wantOutput().

51 { return _type; }
const std::string _type
The type of this class.
Definition: MooseBase.h:87

◆ typeAndName()

std::string MooseBase::typeAndName ( ) const
inherited

Get the class's combined type and name; useful in error handling.

Returns
The type and name of this class in the form '<type()> "<name()>"'.

Definition at line 27 of file MooseBase.C.

Referenced by MaterialPropertyStorage::addProperty(), MeshGeneratorSystem::dataDrivenError(), ReporterContext< std::vector< T > >::finalize(), and ReporterData::getReporterInfo().

28 {
29  return type() + std::string(" \"") + name() + std::string("\"");
30 }
virtual const std::string & name() const
Get the name of the class.
Definition: MooseBase.h:57
const std::string & type() const
Get the type of this class.
Definition: MooseBase.h:51

◆ uniformRefineLevel()

unsigned int MooseMesh::uniformRefineLevel ( ) const

Returns the level of uniform refinement requested (zero if AMR is disabled).

Definition at line 3211 of file MooseMesh.C.

Referenced by FEProblemBase::initialSetup(), and Adaptivity::uniformRefineWithProjection().

3212 {
3213  return _uniform_refine_level;
3214 }
unsigned int _uniform_refine_level
The level of uniform refinement requested (set to zero if AMR is disabled)
Definition: MooseMesh.h:1457

◆ uniqueName()

MooseObjectName MooseBaseParameterInterface::uniqueName ( ) const
inlineinherited

The unique name for accessing input parameters of this object in the InputParameterWarehouse.

Definition at line 67 of file MooseBaseParameterInterface.h.

Referenced by MooseBaseParameterInterface::connectControllableParams(), and Action::uniqueActionName().

68  {
69  return MooseObjectName(_pars.get<std::string>("_unique_name"));
70  }
std::vector< std::pair< R1, R2 > > get(const std::string &param1, const std::string &param2) const
Combine two vector parameters into a single vector of pairs.
const InputParameters & _pars
Parameters of this object, references the InputParameters stored in the InputParametersWarehouse.
A class for storing the names of MooseObject by tag and object name.

◆ uniqueParameterName()

MooseObjectParameterName MooseBaseParameterInterface::uniqueParameterName ( const std::string &  parameter_name) const
inlineinherited

The unique parameter name of a valid parameter of this object for accessing parameter controls.

Definition at line 52 of file MooseBaseParameterInterface.h.

53  {
55  _pars.get<std::string>("_moose_base"), _moose_base.name(), parameter_name);
56  }
const MooseBase & _moose_base
The MooseBase object that inherits this class.
std::vector< std::pair< R1, R2 > > get(const std::string &param1, const std::string &param2) const
Combine two vector parameters into a single vector of pairs.
virtual const std::string & name() const
Get the name of the class.
Definition: MooseBase.h:57
const InputParameters & _pars
Parameters of this object, references the InputParameters stored in the InputParametersWarehouse.
A class for storing an input parameter name.

◆ update()

void MooseMesh::update ( )

Calls buildNodeListFromSideList(), buildNodeList(), and buildBndElemList().

Definition at line 616 of file MooseMesh.C.

Referenced by meshChanged(), prepare(), and EqualValueBoundaryConstraint::updateConstrainedNodes().

617 {
618  TIME_SECTION("update", 3, "Updating Mesh", true);
619 
620  // Rebuild the boundary conditions
622 
623  // Update the node to elem map
624  _node_to_elem_map.clear();
625  _node_to_elem_map_built = false;
628 
629  buildNodeList();
631  cacheInfo();
632  buildElemIDInfo();
633 
634  // this will make moose mesh aware of p-refinement added by mesh generators including
635  // a file mesh generator loading a restart checkpoint file
636  _max_p_level = 0;
637  _max_h_level = 0;
638  for (const auto & elem : getMesh().active_local_element_ptr_range())
639  {
640  if (elem->p_level() > _max_p_level)
642  if (elem->level() > _max_h_level)
643  _max_h_level = elem->level();
644  }
645  comm().max(_max_p_level);
646  comm().max(_max_h_level);
647 
648  // the flag might have been set by calling doingPRefinement(true)
650 
652 }
bool _node_to_elem_map_built
Definition: MooseMesh.h:1506
void buildElemIDInfo()
Build extra data for faster access to the information of extra element integers.
Definition: MooseMesh.C:1056
bool _finite_volume_info_dirty
Definition: MooseMesh.h:1615
std::map< dof_id_type, std::vector< dof_id_type > > _node_to_elem_map
A map of all of the current nodes to the elements that they are connected to.
Definition: MooseMesh.h:1505
bool _doing_p_refinement
Whether we have p-refinement (as opposed to h-refinement)
Definition: MooseMesh.h:1877
const Parallel::Communicator & comm() const
unsigned int p_level() const
bool _node_to_active_semilocal_elem_map_built
Definition: MooseMesh.h:1510
void cacheInfo()
Definition: MooseMesh.C:1404
void buildNodeListFromSideList()
Calls BoundaryInfo::build_node_list_from_side_list().
Definition: MooseMesh.C:2978
unsigned int _max_h_level
Maximum h-refinement level of all elements.
Definition: MooseMesh.h:1881
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
unsigned int level() const
void max(const T &r, T &o, Request &req) const
void buildBndElemList()
Definition: MooseMesh.C:1152
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094
void buildNodeList()
Calls BoundaryInfo::build_node_list()/build_side_list() and makes separate copies of Nodes/Elems in t...
Definition: MooseMesh.C:1022
std::map< dof_id_type, std::vector< dof_id_type > > _node_to_active_semilocal_elem_map
A map of all of the current nodes to the active elements that they are connected to.
Definition: MooseMesh.h:1509
unsigned int _max_p_level
Maximum p-refinement level of all elements.
Definition: MooseMesh.h:1879

◆ updateActiveSemiLocalNodeRange()

void MooseMesh::updateActiveSemiLocalNodeRange ( std::set< dof_id_type > &  ghosted_elems)

Clears the "semi-local" node list and rebuilds it.

Semi-local nodes consist of all nodes that belong to local and ghost elements.

Definition at line 948 of file MooseMesh.C.

Referenced by FEProblemBase::initialSetup(), FEProblemBase::meshChanged(), and FEProblemBase::possiblyRebuildGeomSearchPatches().

949 {
950  TIME_SECTION("updateActiveSemiLocalNodeRange", 5, "Updating ActiveSemiLocalNode Range");
951 
952  _semilocal_node_list.clear();
953 
954  // First add the nodes connected to local elems
955  ConstElemRange * active_local_elems = getActiveLocalElementRange();
956  for (const auto & elem : *active_local_elems)
957  {
958  for (unsigned int n = 0; n < elem->n_nodes(); ++n)
959  {
960  // Since elem is const here but we require a non-const Node * to
961  // store in the _semilocal_node_list (otherwise things like
962  // UpdateDisplacedMeshThread don't work), we are using a
963  // const_cast. A more long-term fix would be to have
964  // getActiveLocalElementRange return a non-const ElemRange.
965  Node * node = const_cast<Node *>(elem->node_ptr(n));
966 
967  _semilocal_node_list.insert(node);
968  }
969  }
970 
971  // Now add the nodes connected to ghosted_elems
972  for (const auto & ghost_elem_id : ghosted_elems)
973  {
974  Elem * elem = getMesh().elem_ptr(ghost_elem_id);
975  for (unsigned int n = 0; n < elem->n_nodes(); n++)
976  {
977  Node * node = elem->node_ptr(n);
978 
979  _semilocal_node_list.insert(node);
980  }
981  }
982 
983  // Now create the actual range
984  _active_semilocal_node_range = std::make_unique<SemiLocalNodeRange>(_semilocal_node_list.begin(),
985  _semilocal_node_list.end());
986 }
std::set< Node * > _semilocal_node_list
Used for generating the semilocal node range.
Definition: MooseMesh.h:1488
libMesh::ConstElemRange * getActiveLocalElementRange()
Return pointers to range objects for various types of ranges (local nodes, boundary elems...
Definition: MooseMesh.C:1235
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:3443
virtual unsigned int n_nodes() const=0
virtual const Elem * elem_ptr(const dof_id_type i) const=0
const Node * node_ptr(const unsigned int i) const
virtual const Node & node(const dof_id_type i) const
Various accessors (pointers/references) for Node "i".
Definition: MooseMesh.C:817
virtual Elem * elem(const dof_id_type i)
Various accessors (pointers/references) for Elem "i".
Definition: MooseMesh.C:3094
std::unique_ptr< SemiLocalNodeRange > _active_semilocal_node_range
Definition: MooseMesh.h:1496

◆ updateCoordTransform()

void MooseMesh::updateCoordTransform ( )
private

Update the coordinate transformation object based on our coordinate system data.

The coordinate transformation will be created if it hasn't been already

Definition at line 4254 of file MooseMesh.C.

Referenced by MooseMesh(), setAxisymmetricCoordAxis(), setCoordSystem(), and setGeneralAxisymmetricCoordAxes().

4255 {
4256  if (!_coord_transform)
4257  _coord_transform = std::make_unique<MooseAppCoordTransform>(*this);
4258  else
4259  _coord_transform->setCoordinateSystem(*this);
4260 }
std::unique_ptr< MooseAppCoordTransform > _coord_transform
A coordinate transformation object that describes how to transform this problem&#39;s coordinate system i...
Definition: MooseMesh.h:1868

◆ usingGeneralAxisymmetricCoordAxes()

bool MooseMesh::usingGeneralAxisymmetricCoordAxes ( ) const

Returns true if general axisymmetric coordinate axes are being used.

Definition at line 4248 of file MooseMesh.C.

Referenced by getAxisymmetricRadialCoord(), and getUniqueCoordSystem().

4249 {
4250  return _subdomain_id_to_rz_coord_axis.size() > 0;
4251 }
std::unordered_map< SubdomainID, std::pair< Point, RealVectorValue > > _subdomain_id_to_rz_coord_axis
Map of subdomain ID to general axisymmetric axis.
Definition: MooseMesh.h:1864

◆ validParams()

InputParameters MooseMesh::validParams ( )
static

Typical "Moose-style" constructor and copy constructor.

Definition at line 83 of file MooseMesh.C.

Referenced by FileMesh::validParams(), TiledMesh::validParams(), SpiralAnnularMesh::validParams(), GeneratedMesh::validParams(), RinglebMesh::validParams(), AnnularMesh::validParams(), ConcentricCircleMesh::validParams(), MeshGeneratorMesh::validParams(), StitchedMesh::validParams(), and PatternedMesh::validParams().

84 {
86 
87  MooseEnum parallel_type("DEFAULT REPLICATED DISTRIBUTED", "DEFAULT");
88  params.addParam<MooseEnum>("parallel_type",
89  parallel_type,
90  "DEFAULT: Use libMesh::ReplicatedMesh unless --distributed-mesh is "
91  "specified on the command line "
92  "REPLICATED: Always use libMesh::ReplicatedMesh "
93  "DISTRIBUTED: Always use libMesh::DistributedMesh");
94 
95  params.addParam<bool>(
96  "allow_renumbering",
97  true,
98  "If allow_renumbering=false, node and element numbers are kept fixed until deletion");
99 
100  // TODO: this parameter does not belong here, it's only for FileMesh
101  params.addParam<bool>("nemesis",
102  false,
103  "If nemesis=true and file=foo.e, actually reads "
104  "foo.e.N.0, foo.e.N.1, ... foo.e.N.N-1, "
105  "where N = # CPUs, with NemesisIO.");
106 
107  params.addParam<MooseEnum>(
108  "partitioner",
109  partitioning(),
110  "Specifies a mesh partitioner to use when splitting the mesh for a parallel computation.");
111  MooseEnum direction("x y z radial");
112  params.addParam<MooseEnum>("centroid_partitioner_direction",
113  direction,
114  "Specifies the sort direction if using the centroid partitioner. "
115  "Available options: x, y, z, radial");
116 
117  MooseEnum patch_update_strategy("never always auto iteration", "never");
118  params.addParam<MooseEnum>(
119  "patch_update_strategy",
120  patch_update_strategy,
121  "How often to update the geometric search 'patch'. The default is to "
122  "never update it (which is the most efficient but could be a problem "
123  "with lots of relative motion). 'always' will update the patch for all "
124  "secondary nodes at the beginning of every timestep which might be time "
125  "consuming. 'auto' will attempt to determine at the start of which "
126  "timesteps the patch for all secondary nodes needs to be updated automatically."
127  "'iteration' updates the patch at every nonlinear iteration for a "
128  "subset of secondary nodes for which penetration is not detected. If there "
129  "can be substantial relative motion between the primary and secondary surfaces "
130  "during the nonlinear iterations within a timestep, it is advisable to use "
131  "'iteration' option to ensure accurate contact detection.");
132 
133  // Note: This parameter is named to match 'construct_side_list_from_node_list' in SetupMeshAction
134  params.addParam<bool>(
135  "construct_node_list_from_side_list",
136  true,
137  "Whether or not to generate nodesets from the sidesets (usually a good idea).");
138  params.addParam<unsigned int>(
139  "patch_size", 40, "The number of nodes to consider in the NearestNode neighborhood.");
140  params.addParam<unsigned int>("ghosting_patch_size",
141  "The number of nearest neighbors considered "
142  "for ghosting purposes when 'iteration' "
143  "patch update strategy is used. Default is "
144  "5 * patch_size.");
145  params.addParam<unsigned int>("max_leaf_size",
146  10,
147  "The maximum number of points in each leaf of the KDTree used in "
148  "the nearest neighbor search. As the leaf size becomes larger,"
149  "KDTree construction becomes faster but the nearest neighbor search"
150  "becomes slower.");
151 
152  params.addParam<bool>("build_all_side_lowerd_mesh",
153  false,
154  "True to build the lower-dimensional mesh for all sides.");
155 
156  params.addParam<bool>("skip_refine_when_use_split",
157  true,
158  "True to skip uniform refinements when using a pre-split mesh.");
159 
160  params.addParam<std::vector<SubdomainID>>(
161  "add_subdomain_ids",
162  "The listed subdomain ids will be assumed valid for the mesh. This permits setting up "
163  "subdomain restrictions for subdomains initially containing no elements, which can occur, "
164  "for example, in additive manufacturing simulations which dynamically add and remove "
165  "elements. Names for this subdomains may be provided using add_subdomain_names. In this case "
166  "this list and add_subdomain_names must contain the same number of items.");
167  params.addParam<std::vector<SubdomainName>>(
168  "add_subdomain_names",
169  "The listed subdomain names will be assumed valid for the mesh. This permits setting up "
170  "subdomain restrictions for subdomains initially containing no elements, which can occur, "
171  "for example, in additive manufacturing simulations which dynamically add and remove "
172  "elements. IDs for this subdomains may be provided using add_subdomain_ids. Otherwise IDs "
173  "are automatically assigned. In case add_subdomain_ids is set too, both lists must contain "
174  "the same number of items.");
175 
176  params.addParam<std::vector<BoundaryID>>(
177  "add_sideset_ids",
178  "The listed sideset ids will be assumed valid for the mesh. This permits setting up boundary "
179  "restrictions for sidesets initially containing no sides. Names for this sidesets may be "
180  "provided using add_sideset_names. In this case this list and add_sideset_names must contain "
181  "the same number of items.");
182  params.addParam<std::vector<BoundaryName>>(
183  "add_sideset_names",
184  "The listed sideset names will be assumed valid for the mesh. This permits setting up "
185  "boundary restrictions for sidesets initially containing no sides. Ids for this sidesets may "
186  "be provided using add_sideset_ids. In this case this list and add_sideset_ids must contain "
187  "the same number of items.");
188 
189  params.addParam<std::vector<BoundaryID>>(
190  "add_nodeset_ids",
191  "The listed nodeset ids will be assumed valid for the mesh. This permits setting up boundary "
192  "restrictions for node initially containing no sides. Names for this nodesets may be "
193  "provided using add_nodeset_names. In this case this list and add_nodeset_names must contain "
194  "the same number of items.");
195  params.addParam<std::vector<BoundaryName>>(
196  "add_nodeset_names",
197  "The listed nodeset names will be assumed valid for the mesh. This permits setting up "
198  "boundary restrictions for nodesets initially containing no sides. Ids for this nodesets may "
199  "be provided using add_nodesets_ids. In this case this list and add_nodesets_ids must "
200  "contain the same number of items.");
201 
203 
204  // This indicates that the derived mesh type accepts a MeshGenerator, and should be set to true in
205  // derived types that do so.
206  params.addPrivateParam<bool>("_mesh_generator_mesh", false);
207 
208  // Whether or not the mesh is pre split
209  params.addPrivateParam<bool>("_is_split", false);
210 
211  params.registerBase("MooseMesh");
212 
213  // groups
214  params.addParamNamesToGroup("patch_update_strategy patch_size max_leaf_size", "Geometric search");
215  params.addParamNamesToGroup("nemesis", "Advanced");
216  params.addParamNamesToGroup("add_subdomain_ids add_subdomain_names add_sideset_ids "
217  "add_sideset_names add_nodeset_ids add_nodeset_names",
218  "Pre-declaration of future mesh sub-entities");
219  params.addParamNamesToGroup("construct_node_list_from_side_list build_all_side_lowerd_mesh",
220  "Automatic definition of mesh element sides entities");
221  params.addParamNamesToGroup("partitioner centroid_partitioner_direction", "Partitioning");
222 
223  return params;
224 }
static InputParameters validParams()
Describes the parameters this object can take to setup transformations.
The main MOOSE class responsible for handling user-defined parameters in almost every MOOSE system...
This is a "smart" enum class intended to replace many of the shortcomings in the C++ enum type It sho...
Definition: MooseEnum.h:33
static MooseEnum partitioning()
returns MooseMesh partitioning options so other classes can use it
Definition: MooseMesh.C:3893
void addParam(const std::string &name, const S &value, const std::string &doc_string)
These methods add an optional parameter and a documentation string to the InputParameters object...
static InputParameters validParams()
Definition: MooseObject.C:25

Member Data Documentation

◆ _action_factory

ActionFactory& MooseBaseParameterInterface::_action_factory
protectedinherited

◆ _active_local_elem_range

std::unique_ptr<libMesh::ConstElemRange> MooseMesh::_active_local_elem_range
protected

A range for use with threading.

We do this so that it doesn't have to get rebuilt all the time (which takes time).

Definition at line 1494 of file MooseMesh.h.

Referenced by getActiveLocalElementRange(), and meshChanged().

◆ _active_node_range

std::unique_ptr<libMesh::NodeRange> MooseMesh::_active_node_range
protected

Definition at line 1497 of file MooseMesh.h.

Referenced by getActiveNodeRange(), and meshChanged().

◆ _active_semilocal_node_range

std::unique_ptr<SemiLocalNodeRange> MooseMesh::_active_semilocal_node_range
protected

◆ _all_face_info

std::vector<FaceInfo> MooseMesh::_all_face_info
mutableprivate

FaceInfo object storing information for face based loops.

This container holds all the FaceInfo objects accessible from this process

Definition at line 1604 of file MooseMesh.h.

Referenced by allFaceInfo(), buildFiniteVolumeInfo(), cacheFaceInfoVariableOwnership(), and computeFiniteVolumeCoords().

◆ _allow_recovery

bool MooseMesh::_allow_recovery
private

Whether or not this Mesh is allowed to read a recovery file.

Definition at line 1819 of file MooseMesh.h.

Referenced by allowRecovery(), and init().

◆ _allow_remote_element_removal

bool MooseMesh::_allow_remote_element_removal
private

Whether to allow removal of remote elements.

Definition at line 1828 of file MooseMesh.h.

Referenced by allowRemoteElementRemoval(), buildTypedMesh(), deleteRemoteElements(), and setMeshBase().

◆ _app

MooseApp& MooseBase::_app
protectedinherited

The MOOSE application this is associated with.

Definition at line 84 of file MooseBase.h.

◆ _block_id_mapping

std::vector<std::unordered_map<SubdomainID, std::set<dof_id_type> > > MooseMesh::_block_id_mapping
private

Unique element integer IDs for each subdomain and each extra element integers.

Definition at line 1840 of file MooseMesh.h.

Referenced by buildElemIDInfo(), getAllElemIDs(), and getElemIDsOnBlocks().

◆ _block_node_list

std::map<dof_id_type, std::set<SubdomainID> > MooseMesh::_block_node_list
protected

list of nodes that belongs to a specified block (domain)

Definition at line 1553 of file MooseMesh.h.

Referenced by cacheInfo(), and getNodeBlockIds().

◆ _bnd_elem_ids

std::unordered_map<boundary_id_type, std::unordered_set<dof_id_type> > MooseMesh::_bnd_elem_ids
protected

Map of set of elem IDs connected to each boundary.

Definition at line 1545 of file MooseMesh.h.

Referenced by buildBndElemList(), freeBndElems(), getBoundariesToActiveSemiLocalElemIds(), getBoundaryActiveSemiLocalElemIds(), and isBoundaryElem().

◆ _bnd_elem_range

std::unique_ptr<libMesh::StoredRange<MooseMesh::const_bnd_elem_iterator, const BndElement *> > MooseMesh::_bnd_elem_range
protected

◆ _bnd_elems

std::vector<BndElement *> MooseMesh::_bnd_elems
protected

array of boundary elems

Definition at line 1540 of file MooseMesh.h.

Referenced by bndElemsBegin(), bndElemsEnd(), buildBndElemList(), freeBndElems(), and getBoundaryActiveNeighborElemIds().

◆ _bnd_node_ids

std::map<boundary_id_type, std::set<dof_id_type> > MooseMesh::_bnd_node_ids
protected

Map of sets of node IDs in each boundary.

Definition at line 1537 of file MooseMesh.h.

Referenced by addQuadratureNode(), buildNodeList(), freeBndNodes(), and isBoundaryNode().

◆ _bnd_node_range

std::unique_ptr<libMesh::StoredRange<MooseMesh::const_bnd_node_iterator, const BndNode *> > MooseMesh::_bnd_node_range
protected

Definition at line 1500 of file MooseMesh.h.

Referenced by addQuadratureNode(), getBoundaryNodeRange(), and meshChanged().

◆ _bnd_nodes

std::vector<BndNode *> MooseMesh::_bnd_nodes
protected

array of boundary nodes

Definition at line 1533 of file MooseMesh.h.

Referenced by addQuadratureNode(), bndNodesBegin(), bndNodesEnd(), buildNodeList(), and freeBndNodes().

◆ _boundary_to_normal_map

std::unique_ptr<std::map<BoundaryID, RealVectorValue> > MooseMesh::_boundary_to_normal_map
protected

The boundary to normal map - valid only when AddAllSideSetsByNormals is active.

Definition at line 1530 of file MooseMesh.h.

Referenced by getNormalByBoundaryID(), and setBoundaryToNormalMap().

◆ _bounds

std::vector<std::vector<Real> > MooseMesh::_bounds
protected

The bounds in each dimension of the mesh for regular orthogonal meshes.

Definition at line 1580 of file MooseMesh.h.

Referenced by detectOrthogonalDimRanges(), getMaxInDimension(), getMinInDimension(), and MooseMesh().

◆ _built_from_other_mesh

bool MooseMesh::_built_from_other_mesh = false
protected

Whether or not this mesh was built from another mesh.

Definition at line 1419 of file MooseMesh.h.

Referenced by prepare().

◆ _coarsened_element_children

std::map<const Elem *, std::vector<const Elem *> > MooseMesh::_coarsened_element_children
protected

Map of Parent elements to child elements for elements that were just coarsened.

NOTE: the child element pointers ARE PROBABLY INVALID. Only use them for indexing!

Definition at line 1485 of file MooseMesh.h.

Referenced by cacheChangedLists(), and coarsenedElementChildren().

◆ _coarsened_elements

std::unique_ptr<ConstElemPointerRange> MooseMesh::_coarsened_elements
protected

The elements that were just coarsened.

Definition at line 1478 of file MooseMesh.h.

Referenced by cacheChangedLists(), and coarsenedElementRange().

◆ _console

const ConsoleStream ConsoleStreamInterface::_console
inherited

An instance of helper class to write streams to the Console objects.

Definition at line 31 of file ConsoleStreamInterface.h.

Referenced by IterationAdaptiveDT::acceptStep(), MeshOnlyAction::act(), SetupDebugAction::act(), MaterialOutputAction::act(), Adaptivity::adaptMesh(), FEProblemBase::adaptMesh(), PerfGraph::addToExecutionList(), SimplePredictor::apply(), SystemBase::applyScalingFactors(), MultiApp::backup(), FEProblemBase::backupMultiApps(), CoarsenedPiecewiseLinear::buildCoarsenedGrid(), MeshDiagnosticsGenerator::checkElementOverlap(), MeshDiagnosticsGenerator::checkElementTypes(), MeshDiagnosticsGenerator::checkElementVolumes(), FEProblemBase::checkExceptionAndStopSolve(), SolverSystem::checkInvalidSolution(), MeshDiagnosticsGenerator::checkLocalJacobians(), MeshDiagnosticsGenerator::checkNonConformalMesh(), MeshDiagnosticsGenerator::checkNonConformalMeshFromAdaptivity(), MeshDiagnosticsGenerator::checkNonMatchingEdges(), MeshDiagnosticsGenerator::checkNonPlanarSides(), FEProblemBase::checkProblemIntegrity(), ReferenceResidualConvergence::checkRelativeConvergence(), MeshDiagnosticsGenerator::checkSidesetsOrientation(), MeshDiagnosticsGenerator::checkWatertightNodesets(), MeshDiagnosticsGenerator::checkWatertightSidesets(), IterationAdaptiveDT::computeAdaptiveDT(), TransientBase::computeConstrainedDT(), FixedPointSolve::computeCustomConvergencePostprocessor(), NonlinearSystemBase::computeDamping(), FixedPointIterationAdaptiveDT::computeDT(), IterationAdaptiveDT::computeDT(), IterationAdaptiveDT::computeFailedDT(), IterationAdaptiveDT::computeInitialDT(), IterationAdaptiveDT::computeInterpolationDT(), LinearSystem::computeLinearSystemTags(), FEProblemBase::computeLinearSystemTags(), NonlinearSystemBase::computeScaling(), Problem::console(), IterationAdaptiveDT::constrainStep(), TimeStepper::constrainStep(), MultiApp::createApp(), FEProblemBase::execMultiApps(), FEProblemBase::execMultiAppTransfers(), MFEMSteady::execute(), MessageFromInput::execute(), SteadyBase::execute(), Eigenvalue::execute(), ActionWarehouse::executeActionsWithAction(), ActionWarehouse::executeAllActions(), MeshGeneratorSystem::executeMeshGenerators(), ElementQualityChecker::finalize(), FEProblemBase::finishMultiAppStep(), MeshRepairGenerator::fixOverlappingNodes(), CoarsenBlockGenerator::generate(), MeshGenerator::generateInternal(), VariableCondensationPreconditioner::getDofToCondense(), NonlinearEigen::init(), InversePowerMethod::init(), FEProblemBase::initialAdaptMesh(), EigenExecutionerBase::inversePowerIteration(), FEProblemBase::joinAndFinalize(), TransientBase::keepGoing(), IterationAdaptiveDT::limitDTByFunction(), IterationAdaptiveDT::limitDTToPostprocessorValue(), FEProblemBase::logAdd(), EigenExecutionerBase::makeBXConsistent(), Console::meshChanged(), MooseBaseErrorInterface::mooseDeprecated(), MooseBaseErrorInterface::mooseInfo(), MooseBaseErrorInterface::mooseWarning(), MooseBaseErrorInterface::mooseWarningNonPrefixed(), ReferenceResidualConvergence::nonlinearConvergenceSetup(), ReporterDebugOutput::output(), PerfGraphOutput::output(), SolutionInvalidityOutput::output(), MaterialPropertyDebugOutput::output(), DOFMapOutput::output(), VariableResidualNormsDebugOutput::output(), Console::output(), ControlOutput::outputActiveObjects(), ControlOutput::outputChangedControls(), ControlOutput::outputControls(), Console::outputInput(), Console::outputPostprocessors(), PseudoTimestep::outputPseudoTimestep(), Console::outputReporters(), Console::outputScalarVariables(), Console::outputSystemInformation(), FEProblemBase::possiblyRebuildGeomSearchPatches(), EigenExecutionerBase::postExecute(), AB2PredictorCorrector::postSolve(), ActionWarehouse::printActionDependencySets(), BlockRestrictionDebugOutput::printBlockRestrictionMap(), SolutionInvalidity::printDebug(), EigenExecutionerBase::printEigenvalue(), SecantSolve::printFixedPointConvergenceHistory(), SteffensenSolve::printFixedPointConvergenceHistory(), PicardSolve::printFixedPointConvergenceHistory(), FixedPointSolve::printFixedPointConvergenceReason(), PerfGraphLivePrint::printLiveMessage(), MaterialPropertyDebugOutput::printMaterialMap(), PerfGraphLivePrint::printStats(), NEML2Action::printSummary(), AutomaticMortarGeneration::projectPrimaryNodesSinglePair(), AutomaticMortarGeneration::projectSecondaryNodesSinglePair(), CoarsenBlockGenerator::recursiveCoarsen(), SolutionTimeAdaptiveDT::rejectStep(), MultiApp::restore(), FEProblemBase::restoreMultiApps(), FEProblemBase::restoreSolutions(), NonlinearSystemBase::setInitialSolution(), MooseApp::setupOptions(), Checkpoint::shouldOutput(), SubProblem::showFunctorRequestors(), SubProblem::showFunctors(), FullSolveMultiApp::showStatusMessage(), FixedPointSolve::solve(), FEProblemSolve::solve(), EigenProblem::solve(), NonlinearSystem::solve(), LinearSystem::solve(), LStableDirk2::solve(), LStableDirk3::solve(), ImplicitMidpoint::solve(), ExplicitTVDRK2::solve(), LStableDirk4::solve(), AStableDirk4::solve(), ExplicitRK2::solve(), TransientMultiApp::solveStep(), FixedPointSolve::solveStep(), PerfGraphLivePrint::start(), AB2PredictorCorrector::step(), NonlinearEigen::takeStep(), TransientBase::takeStep(), TerminateChainControl::terminate(), Convergence::verboseOutput(), Console::writeTimestepInformation(), Console::writeVariableNorms(), and FEProblemBase::~FEProblemBase().

◆ _construct_node_list_from_side_list

bool MooseMesh::_construct_node_list_from_side_list
private

Whether or not to allow generation of nodesets from sidesets.

Definition at line 1822 of file MooseMesh.h.

Referenced by buildNodeListFromSideList(), and getConstructNodeListFromSideList().

◆ _coord_sys

std::map<SubdomainID, Moose::CoordinateSystemType>& MooseMesh::_coord_sys
private

Type of coordinate system per subdomain.

Definition at line 1858 of file MooseMesh.h.

Referenced by checkCoordinateSystems(), getCoordSystem(), getUniqueCoordSystem(), setCoordData(), setCoordSystem(), and setGeneralAxisymmetricCoordAxes().

◆ _coord_system_set

bool MooseMesh::_coord_system_set
private

Whether the coordinate system has been set.

Definition at line 1871 of file MooseMesh.h.

Referenced by prepare(), and setCoordSystem().

◆ _coord_transform

std::unique_ptr<MooseAppCoordTransform> MooseMesh::_coord_transform
private

A coordinate transformation object that describes how to transform this problem's coordinate system into the canonical/reference coordinate system.

Definition at line 1868 of file MooseMesh.h.

Referenced by coordTransform(), lengthUnit(), and updateCoordTransform().

◆ _custom_partitioner

std::unique_ptr<libMesh::Partitioner> MooseMesh::_custom_partitioner
protected

The custom partitioner.

Definition at line 1440 of file MooseMesh.h.

Referenced by buildTypedMesh(), and setCustomPartitioner().

◆ _custom_partitioner_requested

bool MooseMesh::_custom_partitioner_requested
protected

◆ _distribution_overridden

bool MooseMesh::_distribution_overridden
protected

Definition at line 1429 of file MooseMesh.h.

◆ _doing_p_refinement

bool MooseMesh::_doing_p_refinement
private

Whether we have p-refinement (as opposed to h-refinement)

Definition at line 1877 of file MooseMesh.h.

Referenced by doingPRefinement(), and update().

◆ _elem_info

std::vector<const ElemInfo *> MooseMesh::_elem_info
mutableprivate

Holds only those ElemInfo objects that have processor_id equal to this process's id, e.g.

the local ElemInfo objects

Definition at line 1600 of file MooseMesh.h.

Referenced by buildFiniteVolumeInfo(), elemInfoVector(), ownedElemInfoBegin(), and ownedElemInfoEnd().

◆ _elem_side_to_face_info

std::unordered_map<std::pair<const Elem *, unsigned int>, FaceInfo *> MooseMesh::_elem_side_to_face_info
mutableprivate

Map from elem-side pair to FaceInfo.

Definition at line 1612 of file MooseMesh.h.

Referenced by buildFiniteVolumeInfo().

◆ _elem_to_elem_info

std::unordered_map<dof_id_type, ElemInfo> MooseMesh::_elem_to_elem_info
mutableprivate

Map connecting elems with their corresponding ElemInfo, we use the element ID as the key.

Definition at line 1596 of file MooseMesh.h.

Referenced by buildFiniteVolumeInfo(), cacheFVElementalDoFs(), computeFiniteVolumeCoords(), and elemInfo().

◆ _elem_to_side_to_qp_to_quadrature_nodes

std::map<dof_id_type, std::map<unsigned int, std::map<dof_id_type, Node *> > > MooseMesh::_elem_to_side_to_qp_to_quadrature_nodes
protected

Definition at line 1549 of file MooseMesh.h.

Referenced by addQuadratureNode(), clearQuadratureNodes(), and getQuadratureNode().

◆ _elem_type_to_child_side_refinement_map

std::map<libMesh::ElemType, std::map<std::pair<int, int>, std::vector<std::vector<QpMap> > > > MooseMesh::_elem_type_to_child_side_refinement_map
private

Holds mappings for "internal" child sides to parent volume. The second key is (child, child_side).

Definition at line 1762 of file MooseMesh.h.

Referenced by buildRefinementMap(), and getRefinementMap().

◆ _elem_type_to_coarsening_map

std::map<std::pair<int, libMesh::ElemType>, std::vector<std::pair<unsigned int, QpMap> > > MooseMesh::_elem_type_to_coarsening_map
private

Holds mappings for volume to volume and parent side to child side Map key:

  • first member corresponds to element side. It's -1 for volume quadrature points
  • second member correponds to the element type Map value:
  • Vector is sized based on the number of quadrature points in the parent (e.g. coarser) element.
  • For each parent quadrature point we store a pair
    • The first member of the pair identifies which child holds the closest refined-level quadrature point
    • The second member of the pair is the QpMap. The _from data member will correspond to the parent quadrature point index. The _to data member will correspond to which child element quadrature point is closest to the parent quadrature point. And _distance is the distance between the two

Definition at line 1779 of file MooseMesh.h.

Referenced by buildCoarseningMap(), and getCoarseningMap().

◆ _elem_type_to_p_coarsening_map

std::map<std::pair<libMesh::ElemType, unsigned int>, std::vector<QpMap> > MooseMesh::_elem_type_to_p_coarsening_map
private

Definition at line 1782 of file MooseMesh.h.

Referenced by buildPRefinementAndCoarseningMaps(), and getPCoarseningMap().

◆ _elem_type_to_p_coarsening_side_map

std::map<std::pair<libMesh::ElemType, unsigned int>, std::vector<QpMap> > MooseMesh::_elem_type_to_p_coarsening_side_map
private

Definition at line 1784 of file MooseMesh.h.

Referenced by buildPRefinementAndCoarseningMaps(), and getPCoarseningSideMap().

◆ _elem_type_to_p_refinement_map

std::map<std::pair<libMesh::ElemType, unsigned int>, std::vector<QpMap> > MooseMesh::_elem_type_to_p_refinement_map
private

Definition at line 1756 of file MooseMesh.h.

Referenced by buildPRefinementAndCoarseningMaps(), and getPRefinementMap().

◆ _elem_type_to_p_refinement_side_map

std::map<std::pair<libMesh::ElemType, unsigned int>, std::vector<QpMap> > MooseMesh::_elem_type_to_p_refinement_side_map
private

Definition at line 1758 of file MooseMesh.h.

Referenced by buildPRefinementAndCoarseningMaps(), and getPRefinementSideMap().

◆ _elem_type_to_refinement_map

std::map<std::pair<int, libMesh::ElemType>, std::vector<std::vector<QpMap> > > MooseMesh::_elem_type_to_refinement_map
private

Holds mappings for volume to volume and parent side to child side Map key:

  • first member corresponds to element side. It's -1 for volume quadrature points
  • second member correponds to the element type Map value:
  • Outermost index is the child element index
  • Once we have indexed by the child element index, we have a std::vector of QpMaps. This vector is sized by the number of reference points in the child element. Then for each reference point in the child element we have a QpMap whose _from index corresponds to the child element reference point, a _to index which corresponds to the reference point on the parent element that the child element reference point is closest to, and a _distance member which is the distance between the mapped child and parent reference quadrature points

Definition at line 1753 of file MooseMesh.h.

Referenced by buildRefinementMap(), and getRefinementMap().

◆ _enabled

const bool& MooseObject::_enabled
protectedinherited

Reference to the "enable" InputParameters, used by Controls for toggling on/off MooseObjects.

Definition at line 51 of file MooseObject.h.

Referenced by MooseObject::enabled().

◆ _extra_bnd_nodes

std::vector<BndNode> MooseMesh::_extra_bnd_nodes
protected

Definition at line 1550 of file MooseMesh.h.

Referenced by addQuadratureNode(), buildNodeList(), and clearQuadratureNodes().

◆ _extreme_nodes

std::vector<Node *> MooseMesh::_extreme_nodes
private

A vector containing the nodes at the corners of a regular orthogonal mesh.

Definition at line 1634 of file MooseMesh.h.

Referenced by detectOrthogonalDimRanges().

◆ _face_info

std::vector<const FaceInfo *> MooseMesh::_face_info
mutableprivate

Holds only those FaceInfo objects that have processor_id equal to this process's id, e.g.

the local FaceInfo objects

Definition at line 1608 of file MooseMesh.h.

Referenced by buildFiniteVolumeInfo(), faceInfo(), nFace(), ownedFaceInfoBegin(), and ownedFaceInfoEnd().

◆ _factory

Factory& MooseBaseParameterInterface::_factory
protectedinherited

◆ _finite_volume_info_dirty

bool MooseMesh::_finite_volume_info_dirty = true
mutableprivate

◆ _ghost_elems_from_ghost_boundaries

std::set<Elem *> MooseMesh::_ghost_elems_from_ghost_boundaries
private

Set of elements ghosted by ghostGhostedBoundaries.

Definition at line 1831 of file MooseMesh.h.

Referenced by ghostGhostedBoundaries().

◆ _ghosted_boundaries

std::set<unsigned int> MooseMesh::_ghosted_boundaries
protected

Definition at line 1558 of file MooseMesh.h.

Referenced by addGhostedBoundary(), getGhostedBoundaries(), and ghostGhostedBoundaries().

◆ _ghosted_boundaries_inflation

std::vector<Real> MooseMesh::_ghosted_boundaries_inflation
protected

Definition at line 1559 of file MooseMesh.h.

Referenced by getGhostedBoundaryInflation(), and setGhostedBoundaryInflation().

◆ _ghosting_functors

std::vector<std::unique_ptr<libMesh::GhostingFunctor> > MooseMesh::_ghosting_functors
protected

Deprecated (DO NOT USE)

Definition at line 1413 of file MooseMesh.h.

◆ _ghosting_patch_size

unsigned int MooseMesh::_ghosting_patch_size
protected

The number of nearest neighbors to consider for ghosting purposes when iteration patch update strategy is used.

Definition at line 1565 of file MooseMesh.h.

Referenced by getGhostingPatchSize().

◆ _half_range

RealVectorValue MooseMesh::_half_range
private

A convenience vector used to hold values in each dimension representing half of the range.

Definition at line 1631 of file MooseMesh.h.

Referenced by addPeriodicVariable(), and minPeriodicVector().

◆ _has_lower_d

bool MooseMesh::_has_lower_d
private

Whether there are any lower-dimensional blocks that are manifolds of higher-dimensional block faces.

Definition at line 1816 of file MooseMesh.h.

Referenced by cacheInfo(), and hasLowerD().

◆ _higher_d_elem_side_to_lower_d_elem

std::unordered_map<std::pair<const Elem *, unsigned short int>, const Elem *> MooseMesh::_higher_d_elem_side_to_lower_d_elem
private

Holds a map from a high-order element side to its corresponding lower-d element.

Definition at line 1811 of file MooseMesh.h.

Referenced by buildLowerDMesh(), cacheInfo(), getLowerDElem(), and getLowerDElemMap().

◆ _id_identical_flag

std::vector<std::vector<bool> > MooseMesh::_id_identical_flag
private

Flags to indicate whether or not any two extra element integers are the same.

Definition at line 1846 of file MooseMesh.h.

Referenced by areElemIDsIdentical(), and buildElemIDInfo().

◆ _is_changed

bool MooseMesh::_is_changed
protected

true if mesh is changed (i.e. after adaptivity step)

Definition at line 1466 of file MooseMesh.h.

◆ _is_displaced

bool MooseMesh::_is_displaced
private

Whether this mesh is displaced.

Definition at line 1849 of file MooseMesh.h.

Referenced by isDisplaced().

◆ _is_nemesis

bool MooseMesh::_is_nemesis
protected

True if a Nemesis Mesh was read in.

Definition at line 1469 of file MooseMesh.h.

Referenced by FileMesh::buildMesh(), determineUseDistributedMesh(), prepare(), and FileMesh::read().

◆ _is_split

const bool MooseMesh::_is_split
protected

Whether or not we are using a (pre-)split mesh (automatically DistributedMesh)

Definition at line 1586 of file MooseMesh.h.

Referenced by determineUseDistributedMesh(), and isSplit().

◆ _linear_finite_volume_dofs_cached

bool MooseMesh::_linear_finite_volume_dofs_cached = false
mutableprivate

Definition at line 1620 of file MooseMesh.h.

◆ _local_node_range

std::unique_ptr<libMesh::ConstNodeRange> MooseMesh::_local_node_range
protected

Definition at line 1498 of file MooseMesh.h.

Referenced by getLocalNodeRange(), and meshChanged().

◆ _lower_d_boundary_blocks

std::set<SubdomainID> MooseMesh::_lower_d_boundary_blocks
private

Mesh blocks for boundary lower-d elements in different types.

Definition at line 1808 of file MooseMesh.h.

Referenced by boundaryLowerDBlocks(), buildLowerDMesh(), and cacheInfo().

◆ _lower_d_elem_to_higher_d_elem_side

std::unordered_map<const Elem *, unsigned short int> MooseMesh::_lower_d_elem_to_higher_d_elem_side
private

Definition at line 1812 of file MooseMesh.h.

Referenced by buildLowerDMesh(), cacheInfo(), and getHigherDSide().

◆ _lower_d_interior_blocks

std::set<SubdomainID> MooseMesh::_lower_d_interior_blocks
private

Mesh blocks for interior lower-d elements in different types.

Definition at line 1806 of file MooseMesh.h.

Referenced by buildLowerDMesh(), cacheInfo(), and interiorLowerDBlocks().

◆ _max_h_level

unsigned int MooseMesh::_max_h_level
private

Maximum h-refinement level of all elements.

Definition at line 1881 of file MooseMesh.h.

Referenced by maxHLevel(), and update().

◆ _max_ids

std::vector<dof_id_type> MooseMesh::_max_ids
private

Maximum integer ID for each extra element integer.

Definition at line 1842 of file MooseMesh.h.

Referenced by buildElemIDInfo(), and maxElementID().

◆ _max_leaf_size

unsigned int MooseMesh::_max_leaf_size
protected

Definition at line 1568 of file MooseMesh.h.

Referenced by getMaxLeafSize().

◆ _max_p_level

unsigned int MooseMesh::_max_p_level
private

Maximum p-refinement level of all elements.

Definition at line 1879 of file MooseMesh.h.

Referenced by maxPLevel(), and update().

◆ _mesh

std::unique_ptr<libMesh::MeshBase> MooseMesh::_mesh
protected

◆ _mesh_boundary_ids

std::set<BoundaryID> MooseMesh::_mesh_boundary_ids
protected

A set of boundary IDs currently present in the mesh.

In serial, this is equivalent to the values returned by _mesh.get_boundary_info().get_boundary_ids(). In parallel, it will contain off-processor boundary IDs as well.

Definition at line 1524 of file MooseMesh.h.

Referenced by getBoundaryIDs(), meshBoundaryIds(), prepare(), and setMeshBoundaryIDs().

◆ _mesh_nodeset_ids

std::set<BoundaryID> MooseMesh::_mesh_nodeset_ids
protected

Definition at line 1526 of file MooseMesh.h.

Referenced by meshNodesetIds(), and prepare().

◆ _mesh_sideset_ids

std::set<BoundaryID> MooseMesh::_mesh_sideset_ids
protected

Definition at line 1525 of file MooseMesh.h.

Referenced by meshSidesetIds(), and prepare().

◆ _mesh_subdomains

std::set<SubdomainID> MooseMesh::_mesh_subdomains
protected

A set of subdomain IDs currently present in the mesh.

For parallel meshes, includes subdomains defined on other processors as well.

Definition at line 1516 of file MooseMesh.h.

Referenced by buildLowerDMesh(), cacheInfo(), checkDuplicateSubdomainNames(), meshSubdomains(), and prepare().

◆ _min_ids

std::vector<dof_id_type> MooseMesh::_min_ids
private

Minimum integer ID for each extra element integer.

Definition at line 1844 of file MooseMesh.h.

Referenced by buildElemIDInfo(), and minElementID().

◆ _moose_mesh_prepared

bool MooseMesh::_moose_mesh_prepared = false
protected

True if prepare has been called on the mesh.

Definition at line 1472 of file MooseMesh.h.

Referenced by prepare(), and prepared().

◆ _name

const std::string MooseBase::_name
protectedinherited

The name of this class.

Definition at line 90 of file MooseBase.h.

Referenced by AddBCAction::act(), AddConstraintAction::act(), AddFVInterfaceKernelAction::act(), PartitionerAction::act(), AddIndicatorAction::act(), AddPostprocessorAction::act(), ReadExecutorParamsAction::act(), AddDamperAction::act(), AddInitialConditionAction::act(), AddUserObjectAction::act(), AddMeshGeneratorAction::act(), AddMultiAppAction::act(), AddTransferAction::act(), AddVectorPostprocessorAction::act(), AddDGKernelAction::act(), AddDiracKernelAction::act(), AddKernelAction::act(), AddFVInitialConditionAction::act(), AddFunctorMaterialAction::act(), AddInterfaceKernelAction::act(), AddMarkerAction::act(), AddScalarKernelAction::act(), AddNodalKernelAction::act(), AddMaterialAction::act(), AddPositionsAction::act(), AddReporterAction::act(), AddTimesAction::act(), AddFieldSplitAction::act(), AddFVKernelAction::act(), AddFVBCAction::act(), AddDistributionAction::act(), SetupPreconditionerAction::act(), SetupTimeIntegratorAction::act(), AddFunctionAction::act(), AddConvergenceAction::act(), AddMeshDivisionAction::act(), AddHDGKernelAction::act(), AddTimeStepperAction::act(), AddOutputAction::act(), AddLinearFVBCAction::act(), AddLinearFVKernelAction::act(), AddCorrectorAction::act(), AddMeshModifiersAction::act(), AddSamplerAction::act(), AddControlAction::act(), AddMFEMFESpaceAction::act(), AddMFEMSubMeshAction::act(), AddMFEMPreconditionerAction::act(), AddMFEMSolverAction::act(), AddPeriodicBCAction::act(), ADPiecewiseLinearInterpolationMaterial::ADPiecewiseLinearInterpolationMaterial(), PiecewiseTabularBase::buildFromFile(), PiecewiseTabularBase::buildFromXY(), PiecewiseLinearBase::buildInterpolation(), CombinerGenerator::CombinerGenerator(), Executor::Executor(), ExtraIDIntegralReporter::ExtraIDIntegralReporter(), QuadraturePointMultiApp::fillPositions(), CentroidMultiApp::fillPositions(), MultiApp::fillPositions(), FunctionDT::FunctionDT(), FillBetweenCurvesGenerator::generate(), FillBetweenPointVectorsGenerator::generate(), FillBetweenSidesetsGenerator::generate(), NearestPointBase< LayeredSideDiffusiveFluxAverage, SideIntegralVariableUserObject >::name(), ParsedFunctorMaterialTempl< is_ad >::ParsedFunctorMaterialTempl(), PiecewiseBilinear::PiecewiseBilinear(), PiecewiseLinearInterpolationMaterial::PiecewiseLinearInterpolationMaterial(), PiecewiseBase::setData(), and AddVariableAction::varName().

◆ _need_delete

bool MooseMesh::_need_delete
private

Whether we need to delete remote elements after init'ing the EquationSystems.

Definition at line 1825 of file MooseMesh.h.

Referenced by allowRemoteElementRemoval(), and needsRemoteElemDeletion().

◆ _need_ghost_ghosted_boundaries

bool MooseMesh::_need_ghost_ghosted_boundaries
private

A parallel mesh generator such as DistributedRectilinearMeshGenerator already make everything ready.

We do not need to gather all boundaries to every single processor. In general, we should avoid using ghostGhostedBoundaries when possible since it is not scalable

Definition at line 1837 of file MooseMesh.h.

Referenced by ghostGhostedBoundaries(), and needGhostGhostedBoundaries().

◆ _neighbor_subdomain_boundary_ids

std::unordered_map<SubdomainID, std::set<BoundaryID> > MooseMesh::_neighbor_subdomain_boundary_ids
private

Holds a map from neighbor subomdain ids to the boundary ids that are attached to it.

Definition at line 1803 of file MooseMesh.h.

Referenced by cacheInfo(), getBoundaryConnectedSecondaryBlocks(), getInterfaceConnectedBlocks(), and getSubdomainInterfaceBoundaryIds().

◆ _node_map

std::vector<Node *> MooseMesh::_node_map
protected

Vector of all the Nodes in the mesh for determining when to add a new point.

Definition at line 1574 of file MooseMesh.h.

Referenced by addUniqueNode().

◆ _node_set_nodes

std::map<boundary_id_type, std::vector<dof_id_type> > MooseMesh::_node_set_nodes
protected

list of nodes that belongs to a specified nodeset: indexing [nodeset_id] -> [array of node ids]

Definition at line 1556 of file MooseMesh.h.

Referenced by buildNodeList(), freeBndNodes(), getNodeList(), and nodeSetNodes().

◆ _node_to_active_semilocal_elem_map

std::map<dof_id_type, std::vector<dof_id_type> > MooseMesh::_node_to_active_semilocal_elem_map
protected

A map of all of the current nodes to the active elements that they are connected to.

Definition at line 1509 of file MooseMesh.h.

Referenced by addQuadratureNode(), nodeToActiveSemilocalElemMap(), and update().

◆ _node_to_active_semilocal_elem_map_built

bool MooseMesh::_node_to_active_semilocal_elem_map_built
protected

Definition at line 1510 of file MooseMesh.h.

Referenced by nodeToActiveSemilocalElemMap(), and update().

◆ _node_to_elem_map

std::map<dof_id_type, std::vector<dof_id_type> > MooseMesh::_node_to_elem_map
protected

A map of all of the current nodes to the elements that they are connected to.

Definition at line 1505 of file MooseMesh.h.

Referenced by addQuadratureNode(), nodeToElemMap(), and update().

◆ _node_to_elem_map_built

bool MooseMesh::_node_to_elem_map_built
protected

Definition at line 1506 of file MooseMesh.h.

Referenced by nodeToElemMap(), and update().

◆ _paired_boundary

std::vector<std::pair<BoundaryID, BoundaryID> > MooseMesh::_paired_boundary
protected

A vector holding the paired boundaries for a regular orthogonal mesh.

Definition at line 1583 of file MooseMesh.h.

Referenced by detectPairedSidesets(), and getPairedBoundaryMapping().

◆ _parallel_type

ParallelType MooseMesh::_parallel_type
protected

Can be set to DISTRIBUTED, REPLICATED, or DEFAULT.

Determines whether the underlying libMesh mesh is a ReplicatedMesh or DistributedMesh.

Definition at line 1423 of file MooseMesh.h.

Referenced by determineUseDistributedMesh(), getParallelType(), and setParallelType().

◆ _parallel_type_overridden

bool MooseMesh::_parallel_type_overridden
protected

Definition at line 1430 of file MooseMesh.h.

Referenced by determineUseDistributedMesh(), and isParallelTypeForced().

◆ _pars

const InputParameters& MooseBaseParameterInterface::_pars
protectedinherited

Parameters of this object, references the InputParameters stored in the InputParametersWarehouse.

Definition at line 173 of file MooseBaseParameterInterface.h.

Referenced by AddFVICAction::act(), AddICAction::act(), CreateProblemDefaultAction::act(), CreateProblemAction::act(), SetupMeshAction::act(), ComposeTimeStepperAction::act(), SetupDebugAction::act(), AddAuxKernelAction::act(), AddPeriodicBCAction::act(), CommonOutputAction::act(), FunctorMaterial::addFunctorPropertyByBlocks(), BreakMeshByBlockGeneratorBase::BreakMeshByBlockGeneratorBase(), PiecewiseTabularBase::buildFromFile(), PNGOutput::calculateRescalingValues(), MooseBaseParameterInterface::connectControllableParams(), Console::Console(), MaterialBase::declareADProperty(), MaterialBase::declareProperty(), FEProblemSolve::FEProblemSolve(), FunctionMaterialBase< is_ad >::FunctionMaterialBase(), FileMeshGenerator::generate(), MaterialBase::getGenericZeroMaterialProperty(), MeshGenerator::getMeshGeneratorNameFromParam(), MeshGenerator::getMeshGeneratorNamesFromParam(), MooseBaseParameterInterface::getParam(), MooseBaseParameterInterface::getRenamedParam(), MeshGenerator::hasGenerateData(), AddVariableAction::init(), AdvancedOutput::initExecutionTypes(), Console::initialSetup(), MooseBaseParameterInterface::isParamSetByUser(), MooseBaseParameterInterface::isParamValid(), MultiApp::keepSolutionDuringRestore(), MooseBaseParameterInterface::MooseBaseParameterInterface(), MooseBaseParameterInterface::paramErrorMsg(), GlobalParamsAction::parameters(), MooseBaseParameterInterface::parameters(), prepare(), Eigenvalue::prepareSolverOptions(), setCoordSystem(), setPartitionerHelper(), SetupMeshAction::setupMesh(), TransientBase::setupTimeIntegrator(), MooseBaseParameterInterface::uniqueName(), and MooseBaseParameterInterface::uniqueParameterName().

◆ _partitioner_name

MooseEnum MooseMesh::_partitioner_name
protected

The partitioner used on this mesh.

Definition at line 1436 of file MooseMesh.h.

Referenced by partitionerName(), and setPartitionerHelper().

◆ _partitioner_overridden

bool MooseMesh::_partitioner_overridden
protected

Definition at line 1437 of file MooseMesh.h.

Referenced by isPartitionerForced(), and setPartitionerHelper().

◆ _patch_size

unsigned int MooseMesh::_patch_size
protected

The number of nodes to consider in the NearestNode neighborhood.

Definition at line 1562 of file MooseMesh.h.

Referenced by getPatchSize().

◆ _patch_update_strategy

Moose::PatchUpdateType MooseMesh::_patch_update_strategy
protected

The patch update strategy.

Definition at line 1571 of file MooseMesh.h.

Referenced by getPatchUpdateStrategy(), MooseMesh(), and setPatchUpdateStrategy().

◆ _periodic_dim

std::map<unsigned int, std::vector<bool> > MooseMesh::_periodic_dim
private

A map of vectors indicating which dimensions are periodic in a regular orthogonal mesh for the specified variable numbers.

This data structure is populated by addPeriodicVariable.

Definition at line 1626 of file MooseMesh.h.

Referenced by addPeriodicVariable(), and isTranslatedPeriodic().

◆ _pg_moose_app

MooseApp& PerfGraphInterface::_pg_moose_app
protectedinherited

The MooseApp that owns the PerfGraph.

Definition at line 124 of file PerfGraphInterface.h.

Referenced by PerfGraphInterface::perfGraph().

◆ _prefix

const std::string PerfGraphInterface::_prefix
protectedinherited

A prefix to use for all sections.

Definition at line 127 of file PerfGraphInterface.h.

Referenced by PerfGraphInterface::timedSectionName().

◆ _provided_coord_blocks

std::vector<SubdomainName> MooseMesh::_provided_coord_blocks
private

Set for holding user-provided coordinate system type block names.

Definition at line 1874 of file MooseMesh.h.

Referenced by MooseMesh(), prepare(), and setCoordSystem().

◆ _quadrature_nodes

std::map<dof_id_type, Node *> MooseMesh::_quadrature_nodes
protected

Definition at line 1547 of file MooseMesh.h.

Referenced by addQuadratureNode(), clearQuadratureNodes(), and queryNodePtr().

◆ _refined_elements

std::unique_ptr<ConstElemPointerRange> MooseMesh::_refined_elements
protected

The elements that were just refined.

Definition at line 1475 of file MooseMesh.h.

Referenced by cacheChangedLists(), and refinedElementRange().

◆ _regular_orthogonal_mesh

bool MooseMesh::_regular_orthogonal_mesh
protected

Boolean indicating whether this mesh was detected to be regular and orthogonal.

Definition at line 1577 of file MooseMesh.h.

Referenced by addPeriodicVariable(), detectOrthogonalDimRanges(), GeneratedMesh::GeneratedMesh(), getPairedBoundaryMapping(), isRegularOrthogonal(), and prepared().

◆ _relationship_managers

std::vector<std::shared_ptr<RelationshipManager> > MooseMesh::_relationship_managers
protected

The list of active geometric relationship managers (bound to the underlying MeshBase object).

Definition at line 1416 of file MooseMesh.h.

◆ _restartable_app

MooseApp& Restartable::_restartable_app
protectedinherited

Reference to the application.

Definition at line 227 of file Restartable.h.

Referenced by Restartable::registerRestartableDataOnApp(), and Restartable::registerRestartableNameWithFilterOnApp().

◆ _restartable_read_only

const bool Restartable::_restartable_read_only
protectedinherited

Flag for toggling read only status (see ReporterData)

Definition at line 236 of file Restartable.h.

Referenced by Restartable::registerRestartableDataOnApp().

◆ _restartable_system_name

const std::string Restartable::_restartable_system_name
protectedinherited

The system name this object is in.

Definition at line 230 of file Restartable.h.

Referenced by Restartable::restartableName().

◆ _restartable_tid

const THREAD_ID Restartable::_restartable_tid
protectedinherited

The thread ID for this object.

Definition at line 233 of file Restartable.h.

Referenced by Restartable::declareRestartableDataHelper().

◆ _rz_coord_axis

unsigned int MooseMesh::_rz_coord_axis
private

Storage for RZ axis selection.

Definition at line 1861 of file MooseMesh.h.

Referenced by getAxisymmetricRadialCoord(), setAxisymmetricCoordAxis(), and setCoordData().

◆ _semilocal_node_list

std::set<Node *> MooseMesh::_semilocal_node_list
protected

Used for generating the semilocal node range.

Definition at line 1488 of file MooseMesh.h.

Referenced by isSemiLocal(), and updateActiveSemiLocalNodeRange().

◆ _skip_deletion_repartition_after_refine

bool MooseMesh::_skip_deletion_repartition_after_refine
protected

Whether or not skip remote deletion and repartition after uniform refinements.

Definition at line 1463 of file MooseMesh.h.

Referenced by setUniformRefineLevel(), and skipDeletionRepartitionAfterRefine().

◆ _skip_refine_when_use_split

bool MooseMesh::_skip_refine_when_use_split
protected

Whether or not to skip uniform refinements when using a pre-split mesh.

Definition at line 1460 of file MooseMesh.h.

Referenced by skipRefineWhenUseSplit().

◆ _sub_to_data

std::unordered_map<SubdomainID, SubdomainData> MooseMesh::_sub_to_data
private

Holds a map from subdomain ids to associated data.

Definition at line 1800 of file MooseMesh.h.

Referenced by cacheInfo(), getBlockConnectedBlocks(), getBoundaryConnectedBlocks(), getSubdomainBoundaryIds(), and isLowerD().

◆ _subdomain_id_to_rz_coord_axis

std::unordered_map<SubdomainID, std::pair<Point, RealVectorValue> > MooseMesh::_subdomain_id_to_rz_coord_axis
private

Map of subdomain ID to general axisymmetric axis.

Definition at line 1864 of file MooseMesh.h.

Referenced by getGeneralAxisymmetricCoordAxis(), setCoordData(), setGeneralAxisymmetricCoordAxes(), and usingGeneralAxisymmetricCoordAxes().

◆ _type

const std::string MooseBase::_type
protectedinherited

◆ _uniform_refine_level

unsigned int MooseMesh::_uniform_refine_level
protected

The level of uniform refinement requested (set to zero if AMR is disabled)

Definition at line 1457 of file MooseMesh.h.

Referenced by setUniformRefineLevel(), and uniformRefineLevel().

◆ _use_distributed_mesh

bool MooseMesh::_use_distributed_mesh
protected

False by default.

Final value is determined by several factors including the 'distribution' setting in the input file, and whether or not the Mesh file is a Nemesis file.

Definition at line 1428 of file MooseMesh.h.

Referenced by buildMeshBaseObject(), buildTypedMesh(), detectPairedSidesets(), determineUseDistributedMesh(), errorIfDistributedMesh(), ghostGhostedBoundaries(), init(), isDistributedMesh(), and setPartitionerHelper().


The documentation for this class was generated from the following files: