PetscOutput Class Reference

Adds the ability to output on every nonlinear and/or linear residual. More...

#include <PetscOutput.h>

Inheritance diagram for PetscOutput:

Public Member Functions
	PetscOutput (const InputParameters &parameters)
	Class constructor. More...
virtual Real	time () override
	Get the output time. More...
virtual Real	timeOld ()
	Get the old output time. More...
virtual Real	dt ()
	Get the current time step size. More...
virtual Real	dtOld ()
	Get old time step size. More...
virtual int	timeStep ()
	Get the current time step. More...
const unsigned int &	interval () const
	Get the output interval. More...
const MultiMooseEnum &	executeOn () const
	Get the current 'execute_on' selections for display. More...
bool	isAdvanced ()
	Returns true if this object is an AdvancedOutput object. More...
virtual const OutputOnWarehouse &	advancedExecuteOn () const
	Returns the advanced 'execute_on' settings. More...
void	allowOutput (bool state)
	Method for controlling the allow output state. More...
virtual void	outputStep (const ExecFlagType &type)
	A single call to this function should output all the necessary data for a single timestep. More...
const std::string &	type () const
	Get the type of this object. More...
const std::string &	name () const
	Get the name of the object. More...
const InputParameters &	parameters () const
	Get the parameters of the object. More...
template<typename T >
const T &	getParam (const std::string &name) const
	Retrieve a parameter for the object. More...
template<typename T >
T	getCheckedPointerParam (const std::string &name, const std::string &error_string="") const
	Verifies that the requested parameter exists and is not NULL and returns it to the caller. More...
bool	isParamValid (const std::string &name) const
	Test if the supplied parameter is valid. More...
MooseApp &	getMooseApp () const
	Get the MooseApp this object is associated with. More...
virtual bool	enabled () const
	Return the enabled status of the object. More...
template<typename... Args>
void	paramError (const std::string &param, Args... args)
	Emits an error prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message. More...
template<typename... Args>
void	paramWarning (const std::string &param, Args... args)
	Emits a warning prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message. More...
template<typename... Args>
void	paramInfo (const std::string &param, Args... args)
	Emits an informational message prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message. More...
template<typename... Args>
void	mooseError (Args &&... args) const
template<typename... Args>
void	mooseWarning (Args &&... args) const
template<typename... Args>
void	mooseDeprecated (Args &&... args) const
template<typename... Args>
void	mooseInfo (Args &&... args) const
virtual void	meshChanged ()
	Called on this object when the mesh changes. More...
virtual void	timestepSetup ()
	Gets called at the beginning of the timestep before this object is asked to do its job. More...
virtual void	jacobianSetup ()
	Gets called just before the Jacobian is computed and before this object is asked to do its job. More...
virtual void	residualSetup ()
	Gets called just before the residual is computed and before this object is asked to do its job. More...
virtual void	subdomainSetup ()
	Gets called when the subdomain changes (i.e. More...
const ExecFlagEnum &	getExecuteOnEnum () const
	Return the execute on MultiMooseEnum for this object. More...
virtual const std::vector< ExecFlagType > &	execFlags () const
	(DEPRECATED) Get the execution flag for the object TODO: ExecFlagType More...
ExecFlagType	execBitFlags () const
	(DEPRECATED) Build and return the execution flags as a bitfield TODO: ExecFlagType More...

Static Public Member Functions
static ExecFlagEnum	getDefaultExecFlagEnum ()
	Return an ExecFlagEnum object with the available execution flags for Output objects. More...
static void	addDeprecatedInputParameters (InputParameters &params)
	A static helper for injecting deprecated parameters. More...
static ExecFlagEnum	getExecuteOptions ()
	(DEPRECATED) Returns the available options for the 'execute_on' input parameters TODO: ExecFlagType More...

Public Attributes
const ConsoleStream	_console
	An instance of helper class to write streams to the Console objects. More...

Protected Member Functions
virtual void	output (const ExecFlagType &type)=0
	Overload this function with the desired output activities. More...
virtual bool	shouldOutput (const ExecFlagType &type)
	Handles logic for determining if a step should be output. More...
virtual bool	onInterval ()
	Returns true if the output interval is satisfied. More...
virtual void	initialSetup ()
	Initialization method. More...
template<typename T >
T &	declareRestartableData (std::string data_name)
	Declare a piece of data as "restartable". More...
template<typename T >
T &	declareRestartableData (std::string data_name, const T &init_value)
	Declare a piece of data as "restartable" and initialize it. More...
template<typename T >
T &	declareRestartableDataWithContext (std::string data_name, void *context)
	Declare a piece of data as "restartable". More...
template<typename T >
T &	declareRestartableDataWithContext (std::string data_name, const T &init_value, void *context)
	Declare a piece of data as "restartable" and initialize it. More...
template<typename T >
T &	declareRecoverableData (std::string data_name)
	Declare a piece of data as "recoverable". More...
template<typename T >
T &	declareRecoverableData (std::string data_name, const T &init_value)
	Declare a piece of data as "restartable" and initialize it. More...
template<typename T >
T &	declareRestartableDataWithObjectName (std::string data_name, std::string object_name)
	Declare a piece of data as "restartable". More...
template<typename T >
T &	declareRestartableDataWithObjectNameWithContext (std::string data_name, std::string object_name, void *context)
	Declare a piece of data as "restartable". More...
PerfID	registerTimedSection (const std::string &section_name, const unsigned int level)
	Call to register a named section for timing. More...

Protected Attributes
Real	_norm
	Current norm returned from PETSc. More...
PetscInt	_nonlinear_iter
	Current non-linear iteration returned from PETSc. More...
PetscInt	_linear_iter
	Current linear iteration returned from PETSc. More...
FEProblemBase *	_problem_ptr
	Pointer the the FEProblemBase object for output object (use this) More...
bool	_transient
	Transient flag (true = transient) More...
bool	_use_displaced
	Flag for using displaced mesh. More...
EquationSystems *	_es_ptr
	Reference the the libMesh::EquationSystems object that contains the data. More...
MooseMesh *	_mesh_ptr
	A convenience pointer to the current mesh (reference or displaced depending on "use_displaced") More...
bool	_sequence
	Flag for forcing call to outputSetup() with every call to output() (restartable) More...
ExecFlagEnum	_execute_on
	The common Execution types; this is used as the default execution type for everything except system information and input. More...
Real &	_time
	The current time for output purposes. More...
Real &	_time_old
	The old time. More...
int &	_t_step
	The current time step. More...
Real &	_dt
	Time step delta. More...
Real &	_dt_old
	Old time step delta. More...
unsigned int	_num
	The number of outputs written. More...
const unsigned int	_interval
	The output time step interval. More...
std::set< Real >	_sync_times
	Sync times for this outputter. More...
Real	_start_time
	Start outputting time. More...
Real	_end_time
	End outputting time. More...
int	_start_step
	Start outputting at this time step. More...
int	_end_step
	End outputting at this time step. More...
Real	_t_tol
	Time checking tolerance. More...
bool	_sync_only
	Flag for only executing at sync times. More...
bool	_initialized
	True if init() has been called. More...
bool	_allow_output
	Flag for disabling output. More...
bool	_is_advanced
	Flag for advanced output testing. More...
OutputOnWarehouse	_advanced_execute_on
	Storage for the individual component execute flags. More...
PerfID	_output_step_timer
	Timers. More...
const InputParameters &	_pars
	Parameters of this object, references the InputParameters stored in the InputParametersWarehouse. More...
MooseApp &	_app
	The MooseApp this object is associated with. More...
const std::string &	_type
	The type of this object (the Class name) More...
const std::string &	_name
	The name of this object, reference to value stored in InputParameters. More...
const bool &	_enabled
	Reference to the "enable" InputParaemters, used by Controls for toggling on/off MooseObjects. More...
FEProblemBase &	_mci_feproblem
	Reference to FEProblemBase instance. More...
const ExecFlagEnum &	_execute_enum
	Execute settings for this oejct. More...
const std::vector< ExecFlagType >	_exec_flags
	(DEPRECATED) execution flag (when is the object executed/evaluated) TODO: ExecFlagType More...
const ExecFlagType &	_current_execute_flag
	Reference to FEProblemBase. More...
const InputParameters *	_pg_params
	Params. More...
PerfGraph &	_perf_graph
	The performance graph to add to. More...
std::string	_prefix
	A prefix to use for all sections. More...

Private Member Functions
void	solveSetup () override
	Internal setup function that executes at the beginning of the time step. More...

Static Private Member Functions
static PetscErrorCode	petscNonlinearOutput (SNES, PetscInt its, PetscReal fnorm, void *void_ptr)
	Performs the output on non-linear iterations. More...
static PetscErrorCode	petscLinearOutput (KSP, PetscInt its, PetscReal fnorm, void *void_ptr)
	Performs the output onlinear iterations. More...

Private Attributes
Real	_nonlinear_time
	The psuedo non-linear time. More...
Real	_nonlinear_dt
	The pseuedo non-linear time step. More...
Real	_linear_time
	Psuedo linear time. More...
Real	_linear_dt
	Psuedo linear time step. More...
bool	_on_linear_residual
	True if current output calls is on the linear residual (used by time()) More...
bool	_on_nonlinear_residual
	True if current output call is on the non-linear residual (used by time()) More...
Real	_nonlinear_dt_divisor
	Pseudo non-linear timestep divisor. More...
Real	_linear_dt_divisor
	Pseudo linear timestep divisor. More...
Real	_nonlinear_start_time
	Non-linear residual output start time. More...
Real	_linear_start_time
	Linear residual output start time. More...
Real	_nonlinear_end_time
	Non-linear residual output end time. More...
Real	_linear_end_time
	Linear residual output end time. More...

Detailed Description

Adds the ability to output on every nonlinear and/or linear residual.

Definition at line 25 of file PetscOutput.h.

Constructor & Destructor Documentation

PetscOutput()

PetscOutput::PetscOutput

(

const InputParameters &

parameters

)

Class constructor.

Parameters

parameters

Outputter input file parameters

Definition at line 80 of file PetscOutput.C.

  : Output(parameters),
    _nonlinear_iter(0),
    _linear_iter(0),
    _on_linear_residual(false),
    _on_nonlinear_residual(false),
    _nonlinear_dt_divisor(getParam<Real>("nonlinear_residual_dt_divisor")),
    _linear_dt_divisor(getParam<Real>("linear_residual_dt_divisor")),
    _nonlinear_start_time(-std::numeric_limits<Real>::max()),
    _linear_start_time(-std::numeric_limits<Real>::max()),
    _nonlinear_end_time(std::numeric_limits<Real>::max()),
    _linear_end_time(std::numeric_limits<Real>::max())
{
  // Output toggle support
  if (getParam<bool>("output_linear"))
    _execute_on.push_back("linear");
  if (getParam<bool>("output_nonlinear"))
    _execute_on.push_back("nonlinear");

  // **** DEPRECATED PARAMETER SUPPORT ****
  if (getParam<bool>("linear_residuals"))
    _execute_on.push_back("linear");
  if (getParam<bool>("nonlinear_residuals"))
    _execute_on.push_back("nonlinear");

  // Nonlinear residual start-time supplied by user
  if (isParamValid("nonlinear_residual_start_time"))
  {
    _nonlinear_start_time = getParam<Real>("nonlinear_residual_start_time");
    _execute_on.push_back("nonlinear");
  }

  // Nonlinear residual end-time supplied by user
  if (isParamValid("nonlinear_residual_end_time"))
    _nonlinear_end_time = getParam<Real>("nonlinear_residual_end_time");

  // Linear residual start-time supplied by user
  if (isParamValid("linear_residual_start_time"))
  {
    _linear_start_time = getParam<Real>("linear_residual_start_time");
    _execute_on.push_back("linear");
  }

  // Linear residual end-time supplied by user
  if (isParamValid("linear_residual_end_time"))
    _linear_end_time = getParam<Real>("linear_residual_end_time");
}

Member Function Documentation

addDeprecatedInputParameters()

static void Output::addDeprecatedInputParameters ( InputParameters &  params )

staticinherited

A static helper for injecting deprecated parameters.

advancedExecuteOn()

const OutputOnWarehouse & Output::advancedExecuteOn ( ) const

virtualinherited

Returns the advanced 'execute_on' settings.

Check if this is valid first with isAdvanced()

Reimplemented in AdvancedOutput.

Definition at line 277 of file Output.C.

{
  mooseError("The output object ", name(), " is not an AdvancedOutput, use isAdvanced() to check.");
  return _advanced_execute_on;
}

allowOutput()

void Output::allowOutput ( bool  state )

inlineinherited

Method for controlling the allow output state.

Parameters

state

The state to set the allow flag to

Definition at line 122 of file Output.h.

{ _allow_output = state; }

declareRecoverableData() [1/2]

template<typename T >

T & Restartable::declareRecoverableData ( std::string  data_name )

protectedinherited

Declare a piece of data as "recoverable".

This means that in the event of a recovery this piece of data will be restored back to its previous value.

Note - this data will NOT be restored on Restart!

NOTE: This returns a reference! Make sure you store it in a reference!

Parameters

data_name

The name of the data (usually just use the same name as the member variable)

Definition at line 271 of file Restartable.h.

{
  std::string full_name = _restartable_system_name + "/" + _restartable_name + "/" + data_name;

  registerRecoverableDataOnApp(full_name);

  return declareRestartableDataWithContext<T>(data_name, nullptr);
}

declareRecoverableData() [2/2]

template<typename T >

T & Restartable::declareRecoverableData ( std::string  data_name, const T &  init_value  )

protectedinherited

Declare a piece of data as "restartable" and initialize it.

This means that in the event of a restart this piece of data will be restored back to its previous value.

Note - this data will NOT be restored on Restart!

NOTE: This returns a reference! Make sure you store it in a reference!

Parameters

data_name	The name of the data (usually just use the same name as the member variable)
init_value	The initial value of the data

Definition at line 282 of file Restartable.h.

{
  std::string full_name = _restartable_system_name + "/" + _restartable_name + "/" + data_name;

  registerRecoverableDataOnApp(full_name);

  return declareRestartableDataWithContext<T>(data_name, init_value, nullptr);
}

declareRestartableData() [1/2]

template<typename T >

T & Restartable::declareRestartableData ( std::string  data_name )

protectedinherited

Declare a piece of data as "restartable".

This means that in the event of a restart this piece of data will be restored back to its previous value.

NOTE: This returns a reference! Make sure you store it in a reference!

Parameters

data_name

The name of the data (usually just use the same name as the member variable)

Definition at line 204 of file Restartable.h.

{
  return declareRestartableDataWithContext<T>(data_name, nullptr);
}

declareRestartableData() [2/2]

template<typename T >

T & Restartable::declareRestartableData ( std::string  data_name, const T &  init_value  )

protectedinherited

Declare a piece of data as "restartable" and initialize it.

This means that in the event of a restart this piece of data will be restored back to its previous value.

NOTE: This returns a reference! Make sure you store it in a reference!

Parameters

data_name	The name of the data (usually just use the same name as the member variable)
init_value	The initial value of the data

Definition at line 211 of file Restartable.h.

{
  return declareRestartableDataWithContext<T>(data_name, init_value, nullptr);
}

declareRestartableDataWithContext() [1/2]

template<typename T >

T & Restartable::declareRestartableDataWithContext ( std::string  data_name, void *  context  )

protectedinherited

Declare a piece of data as "restartable".

This means that in the event of a restart this piece of data will be restored back to its previous value.

NOTE: This returns a reference! Make sure you store it in a reference!

Parameters

data_name	The name of the data (usually just use the same name as the member variable)
context	Context pointer that will be passed to the load and store functions

Definition at line 218 of file Restartable.h.

{
  std::string full_name = _restartable_system_name + "/" + _restartable_name + "/" + data_name;
  auto data_ptr = libmesh_make_unique<RestartableData<T>>(full_name, context);
  T & restartable_data_ref = data_ptr->get();

  registerRestartableDataOnApp(full_name, std::move(data_ptr), _restartable_tid);

  return restartable_data_ref;
}

declareRestartableDataWithContext() [2/2]

template<typename T >

T & Restartable::declareRestartableDataWithContext ( std::string  data_name, const T &  init_value, void *  context  )

protectedinherited

Declare a piece of data as "restartable" and initialize it.

This means that in the event of a restart this piece of data will be restored back to its previous value.

NOTE: This returns a reference! Make sure you store it in a reference!

Parameters

data_name	The name of the data (usually just use the same name as the member variable)
init_value	The initial value of the data
context	Context pointer that will be passed to the load and store functions

Definition at line 231 of file Restartable.h.

{
  std::string full_name = _restartable_system_name + "/" + _restartable_name + "/" + data_name;
  auto data_ptr = libmesh_make_unique<RestartableData<T>>(full_name, context);
  data_ptr->set() = init_value;

  T & restartable_data_ref = data_ptr->get();
  registerRestartableDataOnApp(full_name, std::move(data_ptr), _restartable_tid);

  return restartable_data_ref;
}

declareRestartableDataWithObjectName()

template<typename T >

T & Restartable::declareRestartableDataWithObjectName ( std::string  data_name, std::string  object_name  )

protectedinherited

Declare a piece of data as "restartable".

This means that in the event of a restart this piece of data will be restored back to its previous value.

NOTE: This returns a reference! Make sure you store it in a reference!

Parameters

data_name	The name of the data (usually just use the same name as the member variable)
object_name	A supplied name for the object that is declaring this data.

Definition at line 247 of file Restartable.h.

{
  return declareRestartableDataWithObjectNameWithContext<T>(data_name, object_name, nullptr);
}

declareRestartableDataWithObjectNameWithContext()

template<typename T >

T & Restartable::declareRestartableDataWithObjectNameWithContext ( std::string  data_name, std::string  object_name, void *  context  )

protectedinherited

Declare a piece of data as "restartable".

This means that in the event of a restart this piece of data will be restored back to its previous value.

NOTE: This returns a reference! Make sure you store it in a reference!

Parameters

data_name	The name of the data (usually just use the same name as the member variable)
object_name	A supplied name for the object that is declaring this data.
context	Context pointer that will be passed to the load and store functions

Definition at line 254 of file Restartable.h.

{
  std::string old_name = _restartable_name;

  _restartable_name = object_name;

  T & value = declareRestartableDataWithContext<T>(data_name, context);

  _restartable_name = old_name;

  return value;
}

dt()

Real Output::dt ( )

virtualinherited

Get the current time step size.

Definition at line 241 of file Output.C.

Referenced by Console::writeTimestepInformation().

{
  if (_transient)
    return _dt;
  else
    return 1;
}

dtOld()

Real Output::dtOld ( )

virtualinherited

Get old time step size.

Definition at line 250 of file Output.C.

{
  if (_transient)
    return _dt_old;
  else
    return 1;
}

enabled()

virtual bool MooseObject::enabled ( ) const

inlinevirtualinherited

Return the enabled status of the object.

Reimplemented in EigenKernel.

Definition at line 96 of file MooseObject.h.

Referenced by EigenKernel::enabled().

{ return _enabled; }

execBitFlags()

ExecFlagType SetupInterface::execBitFlags ( ) const

inherited

(DEPRECATED) Build and return the execution flags as a bitfield TODO: ExecFlagType

Definition at line 85 of file SetupInterface.C.

{
  // TODO: ExecFlagType
  mooseDeprecated("The execBitFlags method is being removed because MOOSE was updated to use a "
                  "ExecFlagEnum for execute flags. This method maintains the behavior of the "
                  "original method but the use of this method should be removed from your "
                  "application. The ExecFlagEnum should be inspected directly via the "
                  "getExecuteOnEnum() method.");

  unsigned int exec_bit_field = EXEC_NONE;
  for (const auto & flag : _exec_flags)
    exec_bit_field |= flag.id();
  return ExecFlagType("deprecated", exec_bit_field);
}

execFlags()

const std::vector< ExecFlagType > & SetupInterface::execFlags ( ) const

virtualinherited

(DEPRECATED) Get the execution flag for the object TODO: ExecFlagType

Reimplemented in MultiAppTransfer.

Definition at line 73 of file SetupInterface.C.

{
  // TODO: ExecFlagType
  mooseDeprecated("The execFlags() method is being removed because MOOSE has been updated to use a "
                  "ExecFlagEnum for execute flags. The current flags should be retrieved from "
                  "the \"exeucte_on\" parameters of your object or by using the \"_execute_enum\" "
                  "reference to the parameter or the getExecuteOnEnum() method.");

  return _exec_flags;
}

executeOn()

const MultiMooseEnum & Output::executeOn ( ) const

inherited

Get the current 'execute_on' selections for display.

Definition at line 265 of file Output.C.

{
  return _execute_on;
}

getCheckedPointerParam()

template<typename T >

T MooseObject::getCheckedPointerParam ( const std::string &  name, const std::string &  error_string = ""  ) const

inlineinherited

Verifies that the requested parameter exists and is not NULL and returns it to the caller.

The template parameter must be a pointer or an error will be thrown.

Definition at line 77 of file MooseObject.h.

  {
    return parameters().getCheckedPointerParam<T>(name, error_string);
  }

getDefaultExecFlagEnum()

ExecFlagEnum Output::getDefaultExecFlagEnum ( )

staticinherited

Return an ExecFlagEnum object with the available execution flags for Output objects.

Definition at line 77 of file Output.C.

Referenced by validParams< CommonOutputAction >(), and validParams< Output >().

{
  ExecFlagEnum exec_enum = MooseUtils::getDefaultExecFlagEnum();
  exec_enum.addAvailableFlags(EXEC_FAILED);
  return exec_enum;
}

getExecuteOnEnum()

const ExecFlagEnum & SetupInterface::getExecuteOnEnum ( ) const

inherited

Return the execute on MultiMooseEnum for this object.

Definition at line 67 of file SetupInterface.C.

Referenced by ExecuteMooseObjectWarehouse< Transfer >::addObjectMask(), EigenExecutionerBase::init(), AttribExecOns::initFrom(), and MultiAppTransfer::MultiAppTransfer().

{
  return _execute_enum;
}

getExecuteOptions()

ExecFlagEnum SetupInterface::getExecuteOptions ( )

staticinherited

(DEPRECATED) Returns the available options for the 'execute_on' input parameters TODO: ExecFlagType

Returns

A MooseEnum with the available 'execute_on' options, the default is 'residual'

Definition at line 101 of file SetupInterface.C.

{
  // TODO: ExecFlagType
  ::mooseDeprecated("The 'getExecuteOptions' was replaced by the ExecFlagEnum class because MOOSE "
                    "was updated to use this for the execute flags and the new function provides "
                    "additional arguments for modification of the enum.");
  return MooseUtils::getDefaultExecFlagEnum();
}

getMooseApp()

MooseApp& MooseObject::getMooseApp ( ) const

inlineinherited

Get the MooseApp this object is associated with.

Definition at line 91 of file MooseObject.h.

Referenced by RestartableDataIO::createBackup(), RestartableDataIO::deserializeRestartableData(), ConsoleUtils::outputMeshInformation(), Resurrector::restartRestartableData(), and RestartableDataIO::restoreBackup().

{ return _app; }

getParam()

template<typename T >

const T & MooseObject::getParam ( const std::string &  name ) const

inherited

Retrieve a parameter for the object.

Parameters

name	The name of the parameter

Returns

The value of the parameter

Definition at line 188 of file MooseObject.h.

Referenced by FEProblemBase::addMaterialHelper(), ConstraintWarehouse::addObject(), BicubicSplineFunction::BicubicSplineFunction(), Piecewise::buildFromXandY(), MultiApp::createApp(), DerivativeParsedMaterial::DerivativeParsedMaterial(), EigenKernel::EigenKernel(), FEProblemBase::FEProblemBase(), FieldSplitPreconditioner::FieldSplitPreconditioner(), FiniteDifferencePreconditioner::FiniteDifferencePreconditioner(), SideSetsBetweenSubdomainsGenerator::generate(), ExtraNodesetGenerator::generate(), MeshExtruderGenerator::generate(), SideSetsAroundSubdomainGenerator::generate(), GenericConstantRankTwoTensor::GenericConstantRankTwoTensor(), GhostingUserObject::GhostingUserObject(), TimeSequenceStepper::init(), AttribThread::initFrom(), BlockRestrictable::initializeBlockRestrictable(), BoundaryRestrictable::initializeBoundaryRestrictable(), Console::initialSetup(), AdvancedOutput::initialSetup(), SideSetsBetweenSubdomains::modify(), AddExtraNodeset::modify(), MeshExtruder::modify(), SideSetsAroundSubdomain::modify(), ParsedAddSideset::ParsedAddSideset(), ParsedAux::ParsedAux(), ParsedGenerateSideset::ParsedGenerateSideset(), ParsedMaterial::ParsedMaterial(), ParsedODEKernel::ParsedODEKernel(), ParsedSubdomainMeshGenerator::ParsedSubdomainMeshGenerator(), ParsedSubdomainMeshModifier::ParsedSubdomainMeshModifier(), PhysicsBasedPreconditioner::PhysicsBasedPreconditioner(), SingleMatrixPreconditioner::SingleMatrixPreconditioner(), TimePeriod::TimePeriod(), and VectorOfPostprocessors::VectorOfPostprocessors().

{
  return InputParameters::getParamHelper(name, _pars, static_cast<T *>(0));
}

initialSetup()

void Output::initialSetup ( )

protectedvirtualinherited

Initialization method.

This populates the various data structures needed to control the output

Reimplemented from SetupInterface.

Reimplemented in AdvancedOutput, Exodus, CSV, OversampleOutput, Nemesis, and Console.

Definition at line 154 of file Output.C.

{
  _initialized = true;
}

interval()

const unsigned int& Output::interval ( ) const

inherited

Get the output interval.

isAdvanced()

bool Output::isAdvanced ( )

inherited

Returns true if this object is an AdvancedOutput object.

Definition at line 271 of file Output.C.

{
  return _is_advanced;
}

isParamValid()

bool MooseObject::isParamValid ( const std::string &  name ) const

inlineinherited

Test if the supplied parameter is valid.

Parameters

name	The name of the parameter to test

Definition at line 86 of file MooseObject.h.

Referenced by AdvancedOutput::AdvancedOutput(), BicubicSplineFunction::BicubicSplineFunction(), Piecewise::buildFromFile(), Piecewise::buildFromXandY(), DistributedGeneratedMesh::buildMesh(), GeneratedMesh::buildMesh(), CartesianMeshGenerator::CartesianMeshGenerator(), LibmeshPartitioner::clone(), OversampleOutput::cloneMesh(), CSVReader::CSVReader(), MultiAppNearestNodeTransfer::execute(), Exodus::Exodus(), FEProblemBase::FEProblemBase(), FileOutput::FileOutput(), MultiApp::fillPositions(), FunctionDT::FunctionDT(), RenameBoundaryGenerator::generate(), BreakBoundaryOnSubdomainGenerator::generate(), ElementSubdomainIDGenerator::generate(), ExtraNodesetGenerator::generate(), LowerDBlockFromSidesetGenerator::generate(), MeshSideSetGenerator::generate(), RenameBlockGenerator::generate(), GeneratedMeshGenerator::generate(), ParsedSubdomainMeshGenerator::generate(), MeshExtruderGenerator::generate(), SubdomainBoundingBoxGenerator::generate(), MultiAppNearestNodeTransfer::getLocalEntities(), MeshGenerator::getMesh(), MultiAppNearestNodeTransfer::getNearestNode(), IterationAdaptiveDT::init(), EigenExecutionerBase::init(), MooseMesh::init(), AdvancedOutput::initExecutionTypes(), BlockRestrictable::initializeBlockRestrictable(), BoundaryRestrictable::initializeBoundaryRestrictable(), SolutionAux::initialSetup(), MooseParsedVectorFunction::initialSetup(), Console::initialSetup(), Receiver::initialSetup(), SolutionFunction::initialSetup(), MooseParsedGradFunction::initialSetup(), MooseParsedFunction::initialSetup(), AdvancedOutput::initialSetup(), AdvancedOutput::initPostprocessorOrVectorPostprocessorLists(), IterationAdaptiveDT::IterationAdaptiveDT(), LeastSquaresFit::LeastSquaresFit(), LibmeshPartitioner::LibmeshPartitioner(), BreakBoundaryOnSubdomain::modify(), MeshExtruder::modify(), MeshSideSet::modify(), LowerDBlockFromSideset::modify(), AssignElementSubdomainID::modify(), ParsedSubdomainMeshModifier::modify(), RenameBlock::modify(), SubdomainBoundingBox::modify(), MooseMesh::MooseMesh(), EigenExecutionerBase::normalizeSolution(), Output::Output(), PetscOutput(), Piecewise::Piecewise(), SolutionUserObject::readExodusII(), RenameBlock::RenameBlock(), RenameBlockGenerator::RenameBlockGenerator(), RenameBoundaryGenerator::RenameBoundaryGenerator(), SolutionUserObject::SolutionUserObject(), and TimePeriod::TimePeriod().

{ return _pars.isParamValid(name); }

jacobianSetup()

void SetupInterface::jacobianSetup ( )

virtualinherited

Gets called just before the Jacobian is computed and before this object is asked to do its job.

Reimplemented in EqualValueEmbeddedConstraint.

Definition at line 52 of file SetupInterface.C.

{
}

meshChanged()

virtual void MeshChangedInterface::meshChanged ( )

inlinevirtualinherited

Called on this object when the mesh changes.

Reimplemented in DiracKernel, Console, Exodus, Nemesis, OversampleOutput, ActuallyExplicitEuler, GhostingUserObject, GeometryBase, and EqualValueBoundaryConstraint.

Definition at line 38 of file MeshChangedInterface.h.

{}

mooseDeprecated()

template<typename... Args>

void MooseObject::mooseDeprecated ( Args &&...  args ) const

inlineinherited

Definition at line 158 of file MooseObject.h.

Referenced by FEProblemBase::advanceMultiApps(), MultiApp::appProblem(), MooseMesh::buildSideList(), ChangeOverTimestepPostprocessor::ChangeOverTimestepPostprocessor(), FEProblemBase::computeResidual(), Material::declarePropertyOld(), Material::declarePropertyOlder(), MooseMesh::elem(), MultiAppTransfer::execFlags(), UserForcingFunction::f(), FaceFaceConstraint::FaceFaceConstraint(), FunctionDT::FunctionDT(), RandomICBase::generateRandom(), Control::getExecuteOptions(), FEProblemBase::getNonlinearSystem(), FEProblemBase::getUserObjects(), FEProblemBase::getVectorPostprocessorValue(), FEProblemBase::getVectorPostprocessorValueOld(), NodalScalarKernel::NodalScalarKernel(), MooseMesh::node(), PercentChangePostprocessor::PercentChangePostprocessor(), MooseMesh::setBoundaryToNormalMap(), Exodus::setOutputDimension(), and UserForcingFunction::UserForcingFunction().

  {
    moose::internal::mooseDeprecatedStream(_console, false, std::forward<Args>(args)...);
  }

mooseError()

template<typename... Args>

void MooseObject::mooseError ( Args &&...  args ) const

inlineinherited

Definition at line 144 of file MooseObject.h.

Referenced by GridPartitioner::_do_partition(), PetscExternalPartitioner::_do_partition(), FEProblemBase::addConstraint(), FEProblemBase::addInitialCondition(), FEProblem::addLineSearch(), FEProblemBase::addLineSearch(), FEProblemBase::addOutput(), DiracKernel::addPointWithValidId(), FEProblemBase::addPostprocessor(), MooseMesh::addQuadratureNode(), FEProblemBase::addVectorPostprocessor(), ADPiecewiseLinearInterpolationMaterial< compute_stage >::ADPiecewiseLinearInterpolationMaterial(), Output::advancedExecuteOn(), AnnularMesh::AnnularMesh(), AnnularMeshGenerator::AnnularMeshGenerator(), MultiApp::appPostprocessorValue(), MultiApp::appProblem(), MultiApp::appProblemBase(), MultiApp::appUserObjectBase(), DerivativeParsedMaterialHelper::assembleDerivatives(), Function::average(), Axisymmetric2D3DSolutionFunction::Axisymmetric2D3DSolutionFunction(), BicubicSplineFunction::BicubicSplineFunction(), BoundingValueElementDamper::BoundingValueElementDamper(), BoundingValueNodalDamper::BoundingValueNodalDamper(), BoundsAux::BoundsAux(), BreakMeshByBlockGenerator::BreakMeshByBlockGenerator(), BreakMeshByBlockGeneratorBase::BreakMeshByBlockGeneratorBase(), MooseMesh::buildCoarseningMap(), Piecewise::buildFromFile(), Piecewise::buildFromXandY(), Piecewise::buildFromXY(), TiledMesh::buildMesh(), FileMesh::buildMesh(), SpiralAnnularMesh::buildMesh(), DistributedGeneratedMesh::buildMesh(), GeneratedMesh::buildMesh(), ImageMeshGenerator::buildMesh3D(), ImageMesh::buildMesh3D(), MooseMesh::buildMeshBaseObject(), MooseMesh::buildRefinementMap(), MooseMesh::buildSideList(), CartesianMeshGenerator::CartesianMeshGenerator(), ChangeOverTimePostprocessor::ChangeOverTimePostprocessor(), EigenExecutionerBase::chebyshev(), SubProblem::checkBlockMatProps(), SubProblem::checkBoundaryMatProps(), FEProblemBase::checkCoordinateSystems(), FEProblemBase::checkDependMaterialsHelper(), FEProblemBase::checkDisplacementOrders(), Material::checkExecutionStage(), BreakMeshByBlockBase::checkInputParameter(), Steady::checkIntegrity(), EigenExecutionerBase::checkIntegrity(), ActuallyExplicitEuler::checkLinearConvergence(), FEProblemBase::checkProblemIntegrity(), Material::checkStatefulSanity(), FEProblemBase::checkUserObjects(), LibmeshPartitioner::clone(), MooseMesh::clone(), ComparisonPostprocessor::comparisonIsTrue(), CompositeFunction::CompositeFunction(), ElementLpNormAux::compute(), ElementH1ErrorFunctionAux::compute(), NodalPatchRecovery::compute(), KernelBase::computeADOffDiagJacobian(), InterfaceKernel::computeElemNeighJacobian(), TimeSequenceStepperBase::computeFailedDT(), IterationAdaptiveDT::computeFailedDT(), TimeStepper::computeFailedDT(), HistogramVectorPostprocessor::computeHistogram(), EqualValueEmbeddedConstraint::computeQpJacobian(), EqualValueEmbeddedConstraint::computeQpOffDiagJacobian(), KernelValue::computeQpResidual(), FEProblemBase::computeResidualInternal(), FEProblemBase::computeResidualTag(), FEProblemBase::computeResidualType(), StatisticsVectorPostprocessor::computeStatValue(), Material::computeSubdomainProperties(), ExplicitEuler::computeTimeDerivatives(), ImplicitEuler::computeTimeDerivatives(), BDF2::computeTimeDerivatives(), NewmarkBeta::computeTimeDerivatives(), CrankNicolson::computeTimeDerivatives(), ActuallyExplicitEuler::computeTimeDerivatives(), LStableDirk2::computeTimeDerivatives(), LStableDirk3::computeTimeDerivatives(), ImplicitMidpoint::computeTimeDerivatives(), ExplicitTVDRK2::computeTimeDerivatives(), AStableDirk4::computeTimeDerivatives(), LStableDirk4::computeTimeDerivatives(), ExplicitRK2::computeTimeDerivatives(), PenetrationAux::computeValue(), ConcentricCircleMesh::ConcentricCircleMesh(), TimeStepper::constrainStep(), CoupledForce::CoupledForce(), DebugResidualAux::DebugResidualAux(), FunctorRelationshipManager::delete_remote_elements(), BicubicSplineFunction::derivative(), DerivativeSumMaterial::DerivativeSumMaterial(), DGKernelBase::DGKernelBase(), FunctorRelationshipManager::dofmap_reinit(), FEProblemBase::duplicateVariableCheck(), EigenProblem::EigenProblem(), Eigenvalues::Eigenvalues(), ElementalVariableValue::ElementalVariableValue(), ElementQualityAux::ElementQualityAux(), MooseMesh::errorIfDistributedMesh(), SolutionUserObject::evalMeshFunction(), SolutionUserObject::evalMeshFunctionGradient(), SolutionUserObject::evalMultiValuedMeshFunction(), SolutionUserObject::evalMultiValuedMeshFunctionGradient(), MultiAppPostprocessorTransfer::execute(), DiscreteElementUserObject::execute(), MultiAppPostprocessorInterpolationTransfer::execute(), MultiAppVariableValueSamplePostprocessorTransfer::execute(), ElementQualityChecker::execute(), NodalValueSampler::execute(), InterfaceQpValueUserObject::execute(), PointValue::execute(), MultiAppPostprocessorToAuxScalarTransfer::execute(), MultiAppScalarToAuxScalarTransfer::execute(), MultiAppVariableValueSampleTransfer::execute(), MultiAppUserObjectTransfer::execute(), MultiAppInterpolationTransfer::execute(), FindValueOnLine::execute(), MultiAppNearestNodeTransfer::execute(), TimeExtremeValue::execute(), VectorPostprocessorComparison::execute(), LeastSquaresFit::execute(), LeastSquaresFitHistory::execute(), FEProblemBase::executeControls(), MultiAppVectorPostprocessorTransfer::executeFromMultiapp(), MultiAppVectorPostprocessorTransfer::executeToMultiapp(), Exodus::Exodus(), FileOutput::FileOutput(), CentroidMultiApp::fillPositions(), MultiApp::fillPositions(), VerifyElementUniqueID::finalize(), VerifyNodalUniqueID::finalize(), DiscreteElementUserObject::finalize(), ElementQualityChecker::finalize(), MemoryUsage::finalize(), PointSamplerBase::finalize(), Transfer::find_sys(), BreakMeshByBlockBase::findFreeBoundaryId(), BreakMeshByBlockGeneratorBase::findFreeBoundaryId(), FunctionDT::FunctionDT(), FunctionMaterialBase::FunctionMaterialBase(), ParsedMaterialHelper::functionParse(), FunctionScalarAux::FunctionScalarAux(), FunctionScalarIC::FunctionScalarIC(), GapValueAux::GapValueAux(), ElementSubdomainIDGenerator::generate(), ExtraNodesetGenerator::generate(), RenameBlockGenerator::generate(), RenameBoundaryGenerator::generate(), GeneratedMeshGenerator::generate(), MeshExtruderGenerator::generate(), SideSetsFromBoundingBoxGenerator::generate(), StackGenerator::generate(), SpiralAnnularMeshGenerator::generate(), PatternedMeshGenerator::generate(), BoundingBoxNodeSetGenerator::generate(), GeneratedMesh::GeneratedMesh(), GeneratedMeshGenerator::GeneratedMeshGenerator(), RandomICBase::generateRandom(), GenericConstantMaterial::GenericConstantMaterial(), GenericFunctionMaterial::GenericFunctionMaterial(), MooseMesh::getBoundaryID(), MultiApp::getBoundingBox(), MooseMesh::getCoarseningMap(), Control::getControllableParameterByName(), FEProblemBase::getCoordSystem(), PiecewiseConstant::getDirection(), FEProblemBase::getDistribution(), GhostingUserObject::getElementalValue(), ElementGenerator::getElemType(), MultiApp::getExecutioner(), FEProblemBase::getFunction(), SolutionUserObject::getLocalVarIndex(), SubProblem::getMatrixTagID(), AnnularMesh::getMaxInDimension(), DistributedGeneratedMesh::getMaxInDimension(), GeneratedMesh::getMaxInDimension(), FEProblemBase::getMaxQps(), FEProblemBase::getMaxShapeFunctions(), AnnularMesh::getMinInDimension(), DistributedGeneratedMesh::getMinInDimension(), GeneratedMesh::getMinInDimension(), MooseMesh::getMortarInterface(), MooseMesh::getMortarInterfaceByName(), MooseMesh::getNodeBlockIds(), MooseMesh::getNodeList(), FEProblemBase::getNonlinearSystem(), MooseMesh::getPairedBoundaryMapping(), ImageMeshGenerator::GetPixelInfo(), ImageMesh::GetPixelInfo(), InterfaceQpValueUserObject::getQpValue(), MaterialStdVectorAux::getRealValue(), MooseMesh::getRefinementMap(), FEProblemBase::getSampler(), DisplacedProblem::getScalarVariable(), FEProblemBase::getScalarVariable(), DisplacedProblem::getStandardVariable(), FEProblemBase::getStandardVariable(), MooseMesh::getSubdomainBoundaryIds(), MooseMesh::getSubdomainID(), DisplacedProblem::getSystem(), FEProblemBase::getSystem(), FEProblemBase::getUserObject(), FEProblemBase::getUserObjectBase(), PerformanceData::getValue(), Residual::getValue(), PerfGraphData::getValue(), LineValueSampler::getValue(), FindValueOnLine::getValueAtPoint(), SubProblem::getVariableHelper(), SubProblem::getVectorTagID(), DisplacedProblem::getVectorVariable(), FEProblemBase::getVectorVariable(), GhostingAux::GhostingAux(), MultiApp::globalAppToLocal(), MooseParsedVectorFunction::gradient(), AdvancedOutput::hasOutputHelper(), CrankNicolson::init(), CSVTimeSequenceStepper::init(), IterationAdaptiveDT::init(), EigenExecutionerBase::init(), Transient::init(), MooseMesh::init(), FEProblemBase::init(), NumPicardIterations::initialize(), FullSolveMultiApp::initialSetup(), PiecewiseBase::initialSetup(), SolutionAux::initialSetup(), Axisymmetric2D3DSolutionFunction::initialSetup(), Exodus::initialSetup(), SolutionFunction::initialSetup(), SolutionUserObject::initialSetup(), FEProblemBase::initialSetup(), AdvancedOutput::initOutputList(), AdvancedOutput::initShowHideLists(), Material::initStatefulProperties(), Function::integral(), InterfaceKernel::InterfaceKernel(), InterfaceTimeKernel::InterfaceTimeKernel(), EigenExecutionerBase::inversePowerIteration(), InversePowerMethod::InversePowerMethod(), IterationAdaptiveDT::IterationAdaptiveDT(), LayeredSideIntegral::LayeredSideIntegral(), LeastSquaresFit::LeastSquaresFit(), LibmeshPartitioner::LibmeshPartitioner(), LinearCombinationFunction::LinearCombinationFunction(), LinearCombinationPostprocessor::LinearCombinationPostprocessor(), LinearNodalConstraint::LinearNodalConstraint(), LineMaterialSamplerBase< Real >::LineMaterialSamplerBase(), LineSearch::lineSearch(), LineValueSampler::LineValueSampler(), MaterialRealTensorValueAux::MaterialRealTensorValueAux(), MaterialRealVectorValueAux::MaterialRealVectorValueAux(), MaterialStdVectorRealGradientAux::MaterialStdVectorRealGradientAux(), MaterialVectorPostprocessor::MaterialVectorPostprocessor(), Distribution::median(), FunctorRelationshipManager::mesh_reinit(), SubProblem::meshChanged(), MeshExtruder::MeshExtruder(), MeshExtruderGenerator::MeshExtruderGenerator(), MeshSideSetGenerator::MeshSideSetGenerator(), SideSetsFromPoints::modify(), SideSetsFromNormals::modify(), AddExtraNodeset::modify(), MeshExtruder::modify(), BreakMeshByBlockBase::modify(), AssignElementSubdomainID::modify(), SmoothMesh::modify(), ElementDeleterBase::modify(), AddAllSideSetsByNormals::modify(), ParsedSubdomainMeshModifier::modify(), RenameBlock::modify(), ImageSubdomain::modify(), OrientedSubdomainBoundingBox::modify(), BoundingBoxNodeSet::modify(), SubdomainBoundingBox::modify(), AddSideSetsFromBoundingBox::modify(), MooseGhostPointNeighbors::MooseGhostPointNeighbors(), MooseMesh::MooseMesh(), MultiAppMeshFunctionTransfer::MultiAppMeshFunctionTransfer(), MultiAppPostprocessorTransfer::MultiAppPostprocessorTransfer(), NearestNodeDistanceAux::NearestNodeDistanceAux(), NearestNodeValueAux::NearestNodeValueAux(), RenameBlockGenerator::newBlockID(), RenameBlock::newBlockID(), RenameBlockGenerator::newBlockName(), RenameBlock::newBlockName(), NewmarkBeta::NewmarkBeta(), NodalConstraint::NodalConstraint(), NodalScalarKernel::NodalScalarKernel(), NodalVariableValue::NodalVariableValue(), NumDOFs::NumDOFs(), NumNonlinearIterations::NumNonlinearIterations(), NumVars::NumVars(), FunctorRelationshipManager::operator()(), RelationshipManager::operator==(), XDA::output(), SolutionHistory::output(), Exodus::output(), AdvancedOutput::outputElementalVariables(), AdvancedOutput::outputInput(), AdvancedOutput::outputNodalVariables(), AdvancedOutput::outputPostprocessors(), AdvancedOutput::outputScalarVariables(), AdvancedOutput::outputSystemInformation(), Console::outputVectorPostprocessors(), AdvancedOutput::outputVectorPostprocessors(), MooseObject::paramError(), PiecewiseBilinear::parse(), ParsedAddSideset::ParsedAddSideset(), ParsedAux::ParsedAux(), ParsedGenerateSideset::ParsedGenerateSideset(), ParsedODEKernel::ParsedODEKernel(), ParsedSubdomainMeshGenerator::ParsedSubdomainMeshGenerator(), ParsedSubdomainMeshModifier::ParsedSubdomainMeshModifier(), PetscExternalPartitioner::PetscExternalPartitioner(), PhysicsBasedPreconditioner::PhysicsBasedPreconditioner(), Piecewise::Piecewise(), PiecewiseBilinear::PiecewiseBilinear(), PiecewiseLinearInterpolationMaterial::PiecewiseLinearInterpolationMaterial(), PiecewiseMulticonstant::PiecewiseMulticonstant(), PiecewiseMultiInterpolation::PiecewiseMultiInterpolation(), SolutionUserObject::pointValueGradientWrapper(), SolutionUserObject::pointValueWrapper(), LStableDirk2::postResidual(), LStableDirk3::postResidual(), ImplicitMidpoint::postResidual(), ExplicitTVDRK2::postResidual(), AStableDirk4::postResidual(), LStableDirk4::postResidual(), ExplicitRK2::postResidual(), Predictor::Predictor(), Transient::preExecute(), SolutionUserObject::readExodusII(), SolutionUserObject::readXda(), FunctorRelationshipManager::redistribute(), EqualValueEmbeddedConstraint::reinitConstraint(), RelativeSolutionDifferenceNorm::RelativeSolutionDifferenceNorm(), RenameBlock::RenameBlock(), RenameBlockGenerator::RenameBlockGenerator(), RenameBoundaryGenerator::RenameBoundaryGenerator(), RinglebMesh::RinglebMesh(), RinglebMeshGenerator::RinglebMeshGenerator(), ScalarComponentIC::ScalarComponentIC(), BicubicSplineFunction::secondDerivative(), FEProblemBase::setCoordSystem(), PiecewiseBase::setData(), EigenProblem::setEigenproblemType(), FEProblemSolve::setInnerSolve(), Sampler::setNumberOfRequiedRandomSeeds(), Exodus::setOutputDimensionInExodusWriter(), Split::setup(), TransientMultiApp::setupApp(), TimeSequenceStepperBase::setupSequence(), Transient::setupTimeIntegrator(), SideSetsFromBoundingBoxGenerator::SideSetsFromBoundingBoxGenerator(), SideSetsFromNormals::SideSetsFromNormals(), SideSetsFromNormalsGenerator::SideSetsFromNormalsGenerator(), SideSetsFromPoints::SideSetsFromPoints(), SideSetsFromPointsGenerator::SideSetsFromPointsGenerator(), SolutionTimeAdaptiveDT::SolutionTimeAdaptiveDT(), SolutionUserObject::SolutionUserObject(), PicardSolve::solve(), ActuallyExplicitEuler::solve(), FullSolveMultiApp::solveStep(), SpatialAverageBase::SpatialAverageBase(), UserObject::spatialValue(), SpiralAnnularMesh::SpiralAnnularMesh(), SpiralAnnularMeshGenerator::SpiralAnnularMeshGenerator(), StitchedMesh::StitchedMesh(), NodalUserObject::subdomainSetup(), GeneralUserObject::subdomainSetup(), Constraint::subdomainSetup(), Console::systemInfoFlags(), Terminator::Terminator(), TestSetupPostprocessorDataActionFunction::TestSetupPostprocessorDataActionFunction(), ThreadedGeneralUserObject::ThreadedGeneralUserObject(), ThreadedGeneralUserObject::threadJoin(), DiscreteElementUserObject::threadJoin(), GeneralUserObject::threadJoin(), TiledMeshGenerator::TiledMeshGenerator(), Function::timeDerivative(), TimeExtremeValue::TimeExtremeValue(), TimePeriod::TimePeriod(), VectorPostprocessorVisualizationAux::timestepSetup(), MultiAppCopyTransfer::transfer(), MultiAppMeshFunctionTransfer::transferVariable(), FEProblemBase::uDotDotOldRequested(), FEProblemBase::uDotOldRequested(), EqualValueBoundaryConstraint::updateConstrainedNodes(), SolutionUserObject::updateExodusBracketingTimeIndices(), Axisymmetric2D3DSolutionFunction::value(), ValueRangeMarker::ValueRangeMarker(), ValueThresholdMarker::ValueThresholdMarker(), MultiAppTransfer::variableIntegrityCheck(), VariableTimeIntegrationAux::VariableTimeIntegrationAux(), VectorNodalBC::VectorNodalBC(), VectorOfPostprocessors::VectorOfPostprocessors(), VectorPostprocessorFunction::VectorPostprocessorFunction(), MooseParsedGradFunction::vectorValue(), MooseParsedFunction::vectorValue(), VectorVariableComponentAux::VectorVariableComponentAux(), VolumeHistogram::VolumeHistogram(), VTKOutput::VTKOutput(), DOFMapOutput::writeStreamToFile(), and Console::writeStreamToFile().

                                                      {
    std::ostringstream oss;
    moose::internal::mooseStreamAll(oss, std::forward<Args>(args)...);
    std::string msg = oss.str();
    callMooseErrorRaw(msg, &_app);
  }

mooseInfo()

template<typename... Args>

void MooseObject::mooseInfo ( Args &&...  args ) const

inlineinherited

Definition at line 164 of file MooseObject.h.

Referenced by DerivativeParsedMaterialHelper::assembleDerivatives(), AStableDirk4::AStableDirk4(), ExplicitRK2::ExplicitRK2(), ExplicitTVDRK2::ExplicitTVDRK2(), ParsedMaterialHelper::functionsOptimize(), ImplicitMidpoint::ImplicitMidpoint(), LStableDirk2::LStableDirk2(), LStableDirk3::LStableDirk3(), LStableDirk4::LStableDirk4(), and MooseObject::paramInfo().

  {
    moose::internal::mooseInfoStream(_console, std::forward<Args>(args)...);
  }

mooseWarning()

template<typename... Args>

void MooseObject::mooseWarning ( Args &&...  args ) const

inlineinherited

Definition at line 152 of file MooseObject.h.

Referenced by CartesianMeshGenerator::CartesianMeshGenerator(), OversampleOutput::cloneMesh(), GapValueAux::computeValue(), ElementQualityChecker::finalize(), FiniteDifferencePreconditioner::FiniteDifferencePreconditioner(), ElementSubdomainIDGenerator::generate(), MooseMesh::getBoundaryIDs(), FEProblemBase::getMaterial(), MooseMesh::getSubdomainIDs(), DerivativeFunctionMaterialBase::initialSetup(), AdvancedOutput::initPostprocessorOrVectorPostprocessorLists(), LeastSquaresFit::LeastSquaresFit(), MaterialVectorPostprocessor::MaterialVectorPostprocessor(), AssignElementSubdomainID::modify(), MultiAppTransfer::MultiAppTransfer(), NewmarkBeta::NewmarkBeta(), NodalPatchRecovery::NodalPatchRecovery(), NonlocalIntegratedBC::NonlocalIntegratedBC(), NonlocalKernel::NonlocalKernel(), Output::Output(), MooseObject::paramWarning(), Executioner::problem(), Material::resetQpProperties(), FEProblemBase::sizeZeroes(), TransientMultiApp::solveStep(), Tecplot::Tecplot(), and Checkpoint::updateCheckpointFiles().

  {
    moose::internal::mooseWarningStream(_console, std::forward<Args>(args)...);
  }

name()

const std::string& MooseObject::name ( ) const

inlineinherited

Get the name of the object.

Returns

The name of the object

Definition at line 56 of file MooseObject.h.

Referenced by GridPartitioner::_do_partition(), FEProblemBase::addADJacobianMaterial(), FEProblemBase::addADResidualMaterial(), Executioner::addAttributeReporter(), DumpObjectsProblem::addAuxKernel(), FEProblemBase::addAuxKernel(), DumpObjectsProblem::addAuxScalarKernel(), FEProblemBase::addAuxScalarKernel(), DumpObjectsProblem::addBoundaryCondition(), FEProblemBase::addBoundaryCondition(), DumpObjectsProblem::addConstraint(), FEProblemBase::addConstraint(), FEProblemBase::addDamper(), DumpObjectsProblem::addDGKernel(), FEProblemBase::addDGKernel(), DumpObjectsProblem::addDiracKernel(), FEProblemBase::addDiracKernel(), FEProblemBase::addDistribution(), DumpObjectsProblem::addFunction(), FEProblemBase::addFunction(), FEProblemBase::addIndicator(), DumpObjectsProblem::addInitialCondition(), FEProblemBase::addInitialCondition(), DumpObjectsProblem::addInterfaceKernel(), FEProblemBase::addInterfaceKernel(), DumpObjectsProblem::addKernel(), FEProblemBase::addKernel(), FEProblemBase::addMarker(), DumpObjectsProblem::addMaterial(), FEProblemBase::addMaterial(), FEProblemBase::addMaterialHelper(), MooseMesh::addMortarInterface(), FEProblemBase::addMultiApp(), DumpObjectsProblem::addNodalKernel(), FEProblemBase::addNodalKernel(), FEProblemBase::addPostprocessor(), FEProblemBase::addPredictor(), CreateDisplacedProblemAction::addProxyAlgebraicRelationshipManagers(), CreateDisplacedProblemAction::addProxyGeometricRelationshipManagers(), FEProblemBase::addSampler(), DumpObjectsProblem::addScalarKernel(), FEProblemBase::addScalarKernel(), FEProblemBase::addTimeIntegrator(), FEProblemBase::addTransfer(), FEProblemBase::addUserObject(), FEProblemBase::addVectorPostprocessor(), Output::advancedExecuteOn(), MultiApp::appPostprocessorValue(), MultiApp::appProblem(), MultiApp::appProblemBase(), MultiApp::appUserObjectBase(), DerivativeParsedMaterialHelper::assembleDerivatives(), AStableDirk4::AStableDirk4(), Function::average(), MultiApp::backup(), BreakMeshByBlockGenerator::BreakMeshByBlockGenerator(), ChangeOverTimePostprocessor::ChangeOverTimePostprocessor(), FEProblemBase::checkDependMaterialsHelper(), Damper::checkMinDamping(), Material::checkStatefulSanity(), CompositeFunction::CompositeFunction(), Material::computeSubdomainProperties(), VectorPostprocessorVisualizationAux::computeValue(), MultiApp::createApp(), FEProblemBase::declareVectorPostprocessorVector(), DOFMapOutput::demangle(), DerivativeSumMaterial::DerivativeSumMaterial(), DGKernelBase::DGKernelBase(), DumpObjectsProblem::dumpObjectHelper(), ElementValueSampler::ElementValueSampler(), MooseMesh::errorIfDistributedMesh(), AB2PredictorCorrector::estimateTimeError(), SolutionUserObject::evalMeshFunction(), SolutionUserObject::evalMeshFunctionGradient(), SolutionUserObject::evalMultiValuedMeshFunction(), SolutionUserObject::evalMultiValuedMeshFunctionGradient(), MultiAppPostprocessorTransfer::execute(), MultiAppPostprocessorInterpolationTransfer::execute(), MultiAppVariableValueSamplePostprocessorTransfer::execute(), StatisticsVectorPostprocessor::execute(), MultiAppPostprocessorToAuxScalarTransfer::execute(), MultiAppScalarToAuxScalarTransfer::execute(), MultiAppVariableValueSampleTransfer::execute(), PointValue::execute(), MultiAppMeshFunctionTransfer::execute(), MultiAppInterpolationTransfer::execute(), MultiAppUserObjectTransfer::execute(), MultiAppNearestNodeTransfer::execute(), MultiAppProjectionTransfer::execute(), MultiAppVectorPostprocessorTransfer::execute(), HistogramVectorPostprocessor::execute(), MultiAppCopyTransfer::execute(), Exodus::Exodus(), FileOutput::FileOutput(), MultiApp::fillPositions(), PointSamplerBase::finalize(), DerivativeParsedMaterialHelper::findMatPropDerivative(), FunctionDT::FunctionDT(), GeneralUserObject::GeneralUserObject(), LowerDBlockFromSidesetGenerator::generate(), StitchedMeshGenerator::generate(), Material::getADMaterialProperty(), MultiApp::getBoundingBox(), MooseObject::getCheckedPointerParam(), Control::getControllableParameterByName(), Control::getControllableValue(), Control::getControllableValueByName(), DistributionInterface::getDistribution(), FEProblemBase::getDistribution(), DistributionInterface::getDistributionByName(), MultiApp::getExecutioner(), OutputWarehouse::getFileNumbers(), FEProblemBase::getFunction(), SolutionUserObject::getLocalVarIndex(), Marker::getMarkerValue(), FEProblemBase::getMaterial(), NodalPatchRecovery::getMaterialProperty(), Material::getMaterialProperty(), AuxKernelTempl< ComputeValueType >::getMaterialProperty(), SubProblem::getMaterialPropertyBlockNames(), SubProblem::getMaterialPropertyBoundaryNames(), NodalPatchRecovery::getMaterialPropertyOld(), AuxKernelTempl< ComputeValueType >::getMaterialPropertyOld(), Material::getMaterialPropertyOld(), NodalPatchRecovery::getMaterialPropertyOlder(), AuxKernelTempl< ComputeValueType >::getMaterialPropertyOlder(), Material::getMaterialPropertyOlder(), MeshGenerator::getMesh(), MooseMesh::getMortarInterfaceByName(), OutputWarehouse::getOutput(), MooseObject::getParam(), GeneralUserObject::getPostprocessorValue(), FEProblemBase::getPostprocessorValue(), GeneralUserObject::getPostprocessorValueByName(), FEProblemBase::getPostprocessorValueOld(), FEProblemBase::getPostprocessorValueOlder(), FEProblemBase::getSampler(), FEProblemBase::getScatterVectorPostprocessorValue(), FEProblemBase::getScatterVectorPostprocessorValueOld(), Transient::getTimeStepperName(), InitialConditionBase::getUserObject(), FEProblemBase::getUserObject(), InitialConditionBase::getUserObjectBase(), FEProblemBase::getUserObjectBase(), InitialConditionBase::getUserObjectByName(), GeneralUserObject::getVectorPostprocessorValue(), FEProblemBase::getVectorPostprocessorValue(), GeneralUserObject::getVectorPostprocessorValueByName(), FEProblemBase::getVectorPostprocessorValueOld(), FEProblemBase::hasFunction(), AdvancedOutput::hasOutputHelper(), FEProblemBase::hasPostprocessor(), FEProblemBase::hasUserObject(), FEProblemBase::hasVectorPostprocessor(), FEProblemBase::init(), AdvancedOutput::initExecutionTypes(), AttribName::initFrom(), CSVReader::initialize(), StatisticsVectorPostprocessor::initialize(), HistogramVectorPostprocessor::initialize(), MultiAppProjectionTransfer::initialSetup(), DerivativeFunctionMaterialBase::initialSetup(), SolutionUserObject::initialSetup(), AdvancedOutput::initOutputList(), FEProblemBase::initPostprocessorData(), AdvancedOutput::initPostprocessorOrVectorPostprocessorLists(), Material::initStatefulProperties(), FEProblemBase::initVectorPostprocessorData(), Function::integral(), InterfaceKernel::InterfaceKernel(), Registry::isADObj(), MooseObject::isParamValid(), Registry::isRegisteredObj(), LinearCombinationFunction::LinearCombinationFunction(), Marker::Marker(), MatDiffusionBase< Real >::MatDiffusionBase(), MaterialDerivativeTestKernelBase< Real >::MaterialDerivativeTestKernelBase(), MaterialVectorPostprocessor::MaterialVectorPostprocessor(), Distribution::median(), MemoryUsageReporter::MemoryUsageReporter(), MeshSideSetGenerator::MeshSideSetGenerator(), ElementDeleterBase::modify(), MooseVariableInterface< Real >::MooseVariableInterface(), NearestPointBase< LayeredAverage >::NearestPointBase(), NodalValueSampler::NodalValueSampler(), NodalVariableValue::NodalVariableValue(), Registry::objData(), DOFMapOutput::output(), Output::Output(), AdvancedOutput::outputElementalVariables(), AdvancedOutput::outputInput(), AdvancedOutput::outputNodalVariables(), ConsoleUtils::outputOutputInformation(), Nemesis::outputPostprocessors(), Exodus::outputPostprocessors(), AdvancedOutput::outputPostprocessors(), AdvancedOutput::outputScalarVariables(), AdvancedOutput::outputSystemInformation(), AdvancedOutput::outputVectorPostprocessors(), ParsedAddSideset::ParsedAddSideset(), ParsedAux::ParsedAux(), ParsedGenerateSideset::ParsedGenerateSideset(), ParsedODEKernel::ParsedODEKernel(), ParsedSubdomainMeshGenerator::ParsedSubdomainMeshGenerator(), ParsedSubdomainMeshModifier::ParsedSubdomainMeshModifier(), PointSamplerBase::PointSamplerBase(), Registry::registerObjectsTo(), FEProblemBase::registerRandomInterface(), Material::resetQpProperties(), MultiApp::restore(), Sampler::Sampler(), ScalarComponentIC::ScalarComponentIC(), MooseMesh::setBoundaryName(), Control::setControllableValue(), Control::setControllableValueByName(), OutputWarehouse::setFileNumbers(), MooseMesh::setSubdomainName(), Split::setup(), TransientMultiApp::setupApp(), SideSetsFromNormalsGenerator::SideSetsFromNormalsGenerator(), SideSetsFromPointsGenerator::SideSetsFromPointsGenerator(), SideValueSampler::SideValueSampler(), TransientMultiApp::solveStep(), SpatialAverageBase::SpatialAverageBase(), UserObject::spatialValue(), StitchedMesh::StitchedMesh(), SubProblem::storeBoundaryDelayedCheckMatProp(), SubProblem::storeBoundaryMatPropName(), SubProblem::storeBoundaryZeroMatProp(), SubProblem::storeSubdomainDelayedCheckMatProp(), SubProblem::storeSubdomainMatPropName(), SubProblem::storeSubdomainZeroMatProp(), TaggingInterface::TaggingInterface(), ThreadedGeneralUserObject::ThreadedGeneralUserObject(), Function::timeDerivative(), VectorPostprocessorVisualizationAux::timestepSetup(), TransientMultiApp::TransientMultiApp(), MultiAppTransfer::variableIntegrityCheck(), and AdvancedOutput::wantOutput().

{ return _name; }

onInterval()

bool Output::onInterval ( )

protectedvirtualinherited

Returns true if the output interval is satisfied.

Definition at line 199 of file Output.C.

Referenced by Console::output(), OversampleOutput::outputStep(), and Output::outputStep().

{
  // The output flag to return
  bool output = false;

  // Return true if the current step on the current output interval and within the output time range
  // and within the output step range
  if (_time >= _start_time && _time <= _end_time && _t_step >= _start_step &&
      _t_step <= _end_step && (_t_step % _interval) == 0)
    output = true;

  // Return false if 'sync_only' is set to true
  if (_sync_only)
    output = false;

  // If sync times are not skipped, return true if the current time is a sync_time
  if (_sync_times.find(_time) != _sync_times.end())
    output = true;

  // Return the output status
  return output;
}

output()

virtual void Output::output ( const ExecFlagType &  type )

protectedpure virtualinherited

Overload this function with the desired output activities.

Implemented in AdvancedOutput, TopResidualDebugOutput, Checkpoint, Nemesis, Console, Exodus, CSV, Gnuplot, SolutionHistory, MaterialPropertyDebugOutput, VariableResidualNormsDebugOutput, DOFMapOutput, GMVOutput, Tecplot, VTKOutput, XDA, ControlOutput, and PerfGraphOutput.

Referenced by FileOutput::checkFilename(), OutputWarehouse::getOutput(), OutputWarehouse::getOutputNames(), OutputWarehouse::getOutputs(), Output::onInterval(), and Output::outputStep().

outputStep()

void Output::outputStep ( const ExecFlagType &  type )

virtualinherited

A single call to this function should output all the necessary data for a single timestep.

Parameters

type	The type execution flag (see Moose.h)

See also

outputNodalVariables outputElementalVariables outputScalarVariables outputPostprocessors

Reimplemented in OversampleOutput.

Definition at line 165 of file Output.C.

Referenced by petscLinearOutput(), and petscNonlinearOutput().

{
  // Output is not allowed
  if (!_allow_output && type != EXEC_FORCED)
    return;

  // If recovering disable output of initial condition, it was already output
  if (type == EXEC_INITIAL && _app.isRecovering())
    return;

  // Return if the current output is not on the desired interval
  if (type != EXEC_FINAL && !onInterval())
    return;

  // Call the output method
  if (shouldOutput(type))
  {
    TIME_SECTION(_output_step_timer);
    output(type);
  }
}

paramError()

template<typename... Args>

void MooseObject::paramError ( const std::string &  param, Args...  args  )

inlineinherited

Emits an error prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message.

If this object's parameters were not created directly by the Parser, then this function falls back to the normal behavior of mooseError - only printing a message using the given args.

Definition at line 105 of file MooseObject.h.

Referenced by ADIntegratedBCTempl< T, compute_stage >::ADIntegratedBCTempl(), ADKernelTempl< T, compute_stage >::ADKernelTempl(), ConcentricCircleMeshGenerator::ConcentricCircleMeshGenerator(), DGKernelBase::DGKernelBase(), ElementValueSampler::ElementValueSampler(), StitchedMeshGenerator::generate(), MeshCollectionGenerator::generate(), StackGenerator::generate(), MultiApp::init(), IntegratedBC::IntegratedBC(), Kernel::Kernel(), MeshCollectionGenerator::MeshCollectionGenerator(), NodalBC::NodalBC(), NodalEqualValueConstraint::NodalEqualValueConstraint(), NodalKernel::NodalKernel(), NodalValueSampler::NodalValueSampler(), RandomIC::RandomIC(), MultiAppCopyTransfer::transfer(), and TransientMultiApp::TransientMultiApp().

                                                                      {
    auto prefix = param + ": ";
    if (!_pars.inputLocation(param).empty())
      prefix = _pars.inputLocation(param) + ": (" + _pars.paramFullpath(param) + "):\n";
    mooseError(prefix, args...);
  }

parameters()

const InputParameters& MooseObject::parameters ( ) const

inlineinherited

Get the parameters of the object.

Returns

The parameters of the object

Definition at line 62 of file MooseObject.h.

Referenced by FEProblemBase::addADJacobianMaterial(), FEProblemBase::addADResidualMaterial(), DumpObjectsProblem::addAuxKernel(), FEProblemBase::addAuxKernel(), DumpObjectsProblem::addAuxScalarKernel(), FEProblemBase::addAuxScalarKernel(), DumpObjectsProblem::addBoundaryCondition(), FEProblemBase::addBoundaryCondition(), DumpObjectsProblem::addConstraint(), FEProblemBase::addConstraint(), FEProblemBase::addDamper(), DumpObjectsProblem::addDGKernel(), FEProblemBase::addDGKernel(), DumpObjectsProblem::addDiracKernel(), FEProblemBase::addDiracKernel(), FEProblemBase::addDistribution(), DumpObjectsProblem::addFunction(), FEProblemBase::addFunction(), FEProblemBase::addIndicator(), DumpObjectsProblem::addInitialCondition(), FEProblemBase::addInitialCondition(), DumpObjectsProblem::addInterfaceKernel(), FEProblemBase::addInterfaceKernel(), DumpObjectsProblem::addKernel(), FEProblemBase::addKernel(), FEProblem::addLineSearch(), FEProblemBase::addMarker(), DumpObjectsProblem::addMaterial(), FEProblemBase::addMaterial(), FEProblemBase::addMaterialHelper(), FEProblemBase::addMultiApp(), DumpObjectsProblem::addNodalKernel(), FEProblemBase::addNodalKernel(), FEProblemBase::addOutput(), FEProblemBase::addPostprocessor(), FEProblemBase::addPredictor(), FEProblemBase::addSampler(), DumpObjectsProblem::addScalarKernel(), FEProblemBase::addScalarKernel(), FEProblemBase::addTimeIntegrator(), FEProblemBase::addTransfer(), FEProblemBase::addUserObject(), FEProblemBase::addVectorPostprocessor(), ADPiecewiseLinearInterpolationMaterial< compute_stage >::ADPiecewiseLinearInterpolationMaterial(), AdvancedOutput::AdvancedOutput(), assemble_l2(), Moose::assemble_matrix(), AuxKernelTempl< ComputeValueType >::AuxKernelTempl(), AuxScalarKernel::AuxScalarKernel(), BoundsAux::BoundsAux(), LibmeshPartitioner::clone(), OversampleOutput::cloneMesh(), Moose::compute_bounds(), Moose::compute_jacobian(), Moose::compute_nearnullspace(), Moose::compute_nullspace(), Moose::compute_postcheck(), Moose::compute_transpose_nullspace(), Console::Console(), DumpObjectsProblem::deduceNecessaryParameters(), DumpObjectsProblem::dumpObjectHelper(), EigenProblem::EigenProblem(), Eigenvalue::Eigenvalue(), Exodus::Exodus(), FEProblem::FEProblem(), GapValueAux::GapValueAux(), MooseObject::getCheckedPointerParam(), GhostingUserObject::GhostingUserObject(), MooseMesh::init(), BlockRestrictable::initializeBlockRestrictable(), FEProblemBase::initNullSpaceVectors(), InterfaceKernel::InterfaceKernel(), isValid(), LayeredSideIntegral::LayeredSideIntegral(), MooseVariableInterface< Real >::MooseVariableInterface(), NearestPointBase< LayeredAverage >::NearestPointBase(), NodeFaceConstraint::NodeFaceConstraint(), PenetrationAux::PenetrationAux(), PiecewiseBilinear::PiecewiseBilinear(), PiecewiseLinearInterpolationMaterial::PiecewiseLinearInterpolationMaterial(), MultiAppProjectionTransfer::projectSolution(), RandomIC::RandomIC(), InputParameterWarehouse::removeInputParameters(), FEProblem::setInputParametersFEProblem(), FEProblemBase::setInputParametersFEProblem(), DumpObjectsProblem::stringifyParameters(), and Transient::Transient().

{ return _pars; }

paramInfo()

template<typename... Args>

void MooseObject::paramInfo ( const std::string &  param, Args...  args  )

inlineinherited

Emits an informational message prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message.

If this object's parameters were not created directly by the Parser, then this function falls back to the normal behavior of mooseInfo - only printing a message using the given args.

Definition at line 135 of file MooseObject.h.

Referenced by TransientMultiApp::TransientMultiApp().

  {
    auto prefix = param + ": ";
    if (!_pars.inputLocation(param).empty())
      prefix = _pars.inputLocation(param) + ": (" + _pars.paramFullpath(param) + "):\n";
    mooseInfo(prefix, args...);
  }

paramWarning()

template<typename... Args>

void MooseObject::paramWarning ( const std::string &  param, Args...  args  )

inlineinherited

Emits a warning prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message.

If this object's parameters were not created directly by the Parser, then this function falls back to the normal behavior of mooseWarning - only printing a message using the given args.

Definition at line 119 of file MooseObject.h.

  {
    auto prefix = param + ": ";
    if (!_pars.inputLocation(param).empty())
      prefix = _pars.inputLocation(param) + ": (" + _pars.paramFullpath(param) + "):\n";
    mooseWarning(prefix, args...);
  }

petscLinearOutput()

PetscErrorCode PetscOutput::petscLinearOutput ( KSP  , PetscInt  its, PetscReal  fnorm, void *  void_ptr  )

staticprivate

Performs the output onlinear iterations.

This is the monitor method that PETSc will call on linear iterations

This is one of three locations where we explicitly flush the output buffers during a simulation: PetscOutput::petscNonlinearOutput() PetscOutput::petscLinearOutput() OutputWarehouse::outputStep()

All other Console output should be using newlines to avoid covering buffer errors and to avoid excessive I/O. This call is necessary. In the PETSc callback the context bypasses the OutputWarehouse.

Definition at line 213 of file PetscOutput.C.

Referenced by solveSetup().

{
  // Get the Outputter object
  PetscOutput * ptr = static_cast<PetscOutput *>(void_ptr);

  // Update the pseudo time
  ptr->_linear_time += ptr->_linear_dt;

  // Set the current norm and iteration number
  ptr->_norm = norm;
  ptr->_linear_iter = its;

  // Set the flag indicating that output is occurring on the non-linear residual
  ptr->_on_linear_residual = true;

  // Perform the output
  ptr->outputStep(EXEC_LINEAR);

  ptr->_app.getOutputWarehouse().flushConsoleBuffer();

  // Reset the linear output flag and the simulation time
  ptr->_on_linear_residual = false;

  // Done
  return 0;
}

petscNonlinearOutput()

PetscErrorCode PetscOutput::petscNonlinearOutput ( SNES  , PetscInt  its, PetscReal  fnorm, void *  void_ptr  )

staticprivate

Performs the output on non-linear iterations.

This is the monitor method that PETSc will call on non-linear iterations

This is one of three locations where we explicitly flush the output buffers during a simulation: PetscOutput::petscNonlinearOutput() PetscOutput::petscLinearOutput() OutputWarehouse::outputStep()

All other Console output should be using newlines to avoid covering buffer errors and to avoid excessive I/O. This call is necessary. In the PETSc callback the context bypasses the OutputWarehouse.

Definition at line 173 of file PetscOutput.C.

Referenced by solveSetup().

{
  // Get the outputter object
  PetscOutput * ptr = static_cast<PetscOutput *>(void_ptr);

  // Update the pseudo times
  ptr->_nonlinear_time += ptr->_nonlinear_dt;
  ptr->_linear_time = ptr->_nonlinear_time;

  // Set the current norm and iteration number
  ptr->_norm = norm;
  ptr->_nonlinear_iter = its;

  // Set the flag indicating that output is occurring on the non-linear residual
  ptr->_on_nonlinear_residual = true;

  // Perform the output
  ptr->outputStep(EXEC_NONLINEAR);

  ptr->_app.getOutputWarehouse().flushConsoleBuffer();

  // Reset the non-linear output flag and the simulation time
  ptr->_on_nonlinear_residual = false;

  // Done
  return 0;
}

registerTimedSection()

PerfID PerfGraphInterface::registerTimedSection ( const std::string &  section_name, const unsigned int  level  )

protectedinherited

Call to register a named section for timing.

Parameters

section_name	The name of the code section to be timed
level	The importance of the timer - lower is more important (0 will always come out)

Returns

The ID of the section - use when starting timing

Definition at line 50 of file PerfGraphInterface.C.

{
  if (_prefix != "")
    return _perf_graph.registerSection(_prefix + "::" + section_name, level);
  else
    return _perf_graph.registerSection(section_name, level);
}

residualSetup()

void SetupInterface::residualSetup ( )

virtualinherited

Gets called just before the residual is computed and before this object is asked to do its job.

Definition at line 57 of file SetupInterface.C.

{
}

shouldOutput()

bool Output::shouldOutput ( const ExecFlagType &  type )

protectedvirtualinherited

Handles logic for determining if a step should be output.

Returns

True if a call if output should be preformed

Reimplemented in AdvancedOutput, FileOutput, and PerfGraphOutput.

Definition at line 188 of file Output.C.

Referenced by Output::outputStep(), FileOutput::shouldOutput(), and AdvancedOutput::shouldOutput().

{
  // Note that in older versions of MOOSE, this was overloaded (unintentionally) to always return
  // true for the Console output subclass - basically ignoring execute_on options specified for
  // the console (e.g. via the input file).
  if (_execute_on.contains(type) || type == EXEC_FORCED)
    return true;
  return false;
}

solveSetup()

void PetscOutput::solveSetup ( )

overrideprivatevirtual

Internal setup function that executes at the beginning of the time step.

Reimplemented from Output.

Definition at line 129 of file PetscOutput.C.

{
// Only execute if PETSc exists
#ifdef LIBMESH_HAVE_PETSC

  // Extract the non-linear and linear solvers from PETSc
  NonlinearSystemBase & nl = _problem_ptr->getNonlinearSystemBase();
  PetscNonlinearSolver<Number> * petsc_solver =
      dynamic_cast<PetscNonlinearSolver<Number> *>(nl.nonlinearSolver());
  SNES snes = petsc_solver->snes();
  KSP ksp;
  SNESGetKSP(snes, &ksp);

  // Update the pseudo times
  _nonlinear_time = _time_old; // non-linear time starts with the previous time step
  if (_dt != 0)
    _nonlinear_dt = _dt / _nonlinear_dt_divisor; // set the pseudo non-linear timestep as fraction
                                                 // of real timestep for transient executioners
  else
    _nonlinear_dt = 1. / _nonlinear_dt_divisor; // set the pseudo non-linear timestep for steady
                                                // executioners (here _dt==0)

  _linear_dt = _nonlinear_dt / _linear_dt_divisor; // set the pseudo linear timestep

  // Set the PETSc monitor functions
  if (_execute_on.contains(EXEC_NONLINEAR) &&
      (_time >= _nonlinear_start_time - _t_tol && _time <= _nonlinear_end_time + _t_tol))
  {
    PetscErrorCode ierr = SNESMonitorSet(snes, petscNonlinearOutput, this, PETSC_NULL);
    CHKERRABORT(_communicator.get(), ierr);
  }

  if (_execute_on.contains(EXEC_LINEAR) &&
      (_time >= _linear_start_time - _t_tol && _time <= _linear_end_time + _t_tol))
  {
    PetscErrorCode ierr = KSPMonitorSet(ksp, petscLinearOutput, this, PETSC_NULL);
    CHKERRABORT(_communicator.get(), ierr);
  }
#endif
}

subdomainSetup()

void SetupInterface::subdomainSetup ( )

virtualinherited

Gets called when the subdomain changes (i.e.

in a Jacobian or residual loop) and before this object is asked to do its job

Reimplemented in Material, Constraint, GeneralUserObject, NodalUserObject, and ThreadedGeneralUserObject.

Definition at line 62 of file SetupInterface.C.

{
}

time()

Real PetscOutput::time ( )

overridevirtual

Get the output time.

This outputter enables the ability to perform output on the nonlinear and linear iterations performed by PETSc. To separate theses outputs within the output a pseudo time is defined, this function provides this time and it should be used in place of _time from Outputter.

Reimplemented from Output.

Definition at line 253 of file PetscOutput.C.

Referenced by FileOutput::FileOutput(), Tecplot::output(), Nemesis::output(), Exodus::outputEmptyTimestep(), Exodus::outputNodalVariables(), TableOutput::outputPostprocessors(), TableOutput::outputScalarVariables(), and Console::writeTimestepInformation().

{
  if (_on_nonlinear_residual)
    return _nonlinear_time;
  else if (_on_linear_residual)
    return _linear_time;
  else
    return Output::time();
}

timeOld()

Real Output::timeOld ( )

virtualinherited

Get the old output time.

Returns

The old output time, which may be different than the simulation time

See also

time()

Definition at line 232 of file Output.C.

Referenced by Console::writeTimestepInformation().

{
  if (_transient)
    return _time_old;
  else
    return _t_step - 1;
}

timeStep()

int Output::timeStep ( )

virtualinherited

Get the current time step.

Definition at line 259 of file Output.C.

Referenced by Checkpoint::filename(), CSV::getVectorPostprocessorFileName(), and Console::writeTimestepInformation().

{
  return _t_step;
}

timestepSetup()

void SetupInterface::timestepSetup ( )

virtualinherited

Gets called at the beginning of the timestep before this object is asked to do its job.

Reimplemented in SolutionUserObject, Console, VectorPostprocessorVisualizationAux, NumNonlinearIterations, EqualValueEmbeddedConstraint, VectorMemoryUsage, and MemoryUsage.

Definition at line 47 of file SetupInterface.C.

{
}

type()

const std::string& MooseObject::type ( ) const

inlineinherited

Get the type of this object.

Returns

the name of the type of this object

Definition at line 50 of file MooseObject.h.

Referenced by DumpObjectsProblem::addAuxKernel(), DumpObjectsProblem::addAuxScalarKernel(), FEProblemBase::addAuxScalarVariable(), DumpObjectsProblem::addAuxVariable(), DisplacedProblem::addAuxVariable(), FEProblemBase::addAuxVariable(), DumpObjectsProblem::addBoundaryCondition(), DumpObjectsProblem::addConstraint(), DumpObjectsProblem::addDGKernel(), DumpObjectsProblem::addDiracKernel(), FEProblemBase::addDistribution(), DumpObjectsProblem::addFunction(), FEProblemBase::addFunction(), DumpObjectsProblem::addInitialCondition(), DumpObjectsProblem::addInterfaceKernel(), DumpObjectsProblem::addKernel(), DumpObjectsProblem::addMaterial(), DumpObjectsProblem::addNodalKernel(), FEProblemBase::addPredictor(), FEProblemBase::addSampler(), DumpObjectsProblem::addScalarKernel(), FEProblemBase::addScalarVariable(), PhysicsBasedPreconditioner::addSystem(), FEProblemBase::addTimeIntegrator(), DumpObjectsProblem::addVariable(), DisplacedProblem::addVariable(), FEProblemBase::addVariable(), FEProblemBase::advanceMultiApps(), FEProblemBase::backupMultiApps(), MooseMesh::buildRefinementAndCoarseningMaps(), FEProblemBase::computeAuxiliaryKernels(), DGKernel::computeElemNeighJacobian(), ElemElemConstraint::computeElemNeighJacobian(), InterfaceKernel::computeElemNeighJacobian(), DGKernel::computeElemNeighResidual(), ElemElemConstraint::computeElemNeighResidual(), InterfaceKernel::computeElemNeighResidual(), FEProblemBase::computeMultiAppsDT(), DGKernel::computeOffDiagElemNeighJacobian(), InterfaceKernel::computeOffDiagElemNeighJacobian(), DGConvection::computeQpJacobian(), CoupledTiedValueConstraint::computeQpJacobian(), TiedValueConstraint::computeQpJacobian(), DGDiffusion::computeQpJacobian(), LinearNodalConstraint::computeQpJacobian(), EqualValueBoundaryConstraint::computeQpJacobian(), EqualValueEmbeddedConstraint::computeQpJacobian(), CoupledTiedValueConstraint::computeQpOffDiagJacobian(), EqualValueEmbeddedConstraint::computeQpOffDiagJacobian(), DGConvection::computeQpResidual(), CoupledTiedValueConstraint::computeQpResidual(), TiedValueConstraint::computeQpResidual(), LinearNodalConstraint::computeQpResidual(), DGDiffusion::computeQpResidual(), EqualValueBoundaryConstraint::computeQpResidual(), EqualValueEmbeddedConstraint::computeQpResidual(), FEProblemBase::computeUserObjects(), DisplacedProblem::createQRules(), FEProblemBase::createQRules(), DumpObjectsProblem::deduceNecessaryParameters(), DumpObjectsProblem::dumpObjectHelper(), FEProblemBase::duplicateVariableCheck(), FEProblemBase::execMultiApps(), FEProblemBase::execMultiAppTransfers(), FEProblemBase::execTransfers(), FEProblemBase::finishMultiAppStep(), ElementSubdomainIDGenerator::generate(), ElementGenerator::getElemType(), FEProblemBase::getMaterial(), FEProblemBase::getMaterialData(), FEProblemBase::getTransfers(), FEProblemBase::hasMultiApps(), AdvancedOutput::hasOutput(), FEProblemBase::incrementMultiAppTStep(), AdvancedOutput::initAvailableLists(), SolutionUserObject::initialSetup(), AdvancedOutput::initShowHideLists(), RelationshipManager::isType(), AssignElementSubdomainID::modify(), ControlOutput::output(), Gnuplot::output(), CSV::output(), Exodus::output(), Console::output(), Nemesis::output(), AdvancedOutput::output(), OversampleOutput::outputStep(), Output::outputStep(), FEProblemBase::outputStep(), FEProblemBase::restoreMultiApps(), FEProblemBase::setCoupling(), PerfGraphOutput::shouldOutput(), FileOutput::shouldOutput(), Output::shouldOutput(), AdvancedOutput::shouldOutput(), DisplacedProblem::updateGeomSearch(), FEProblemBase::updateGeomSearch(), and AdvancedOutput::wantOutput().

{ return _type; }

Member Data Documentation

_advanced_execute_on

OutputOnWarehouse Output::_advanced_execute_on

protectedinherited

Storage for the individual component execute flags.

Definition at line 243 of file Output.h.

Referenced by Output::advancedExecuteOn(), AdvancedOutput::advancedExecuteOn(), AdvancedOutput::AdvancedOutput(), AdvancedOutput::hasOutput(), AdvancedOutput::hasOutputHelper(), Console::initialSetup(), AdvancedOutput::initialSetup(), AdvancedOutput::initPostprocessorOrVectorPostprocessorLists(), and AdvancedOutput::wantOutput().

_allow_output

bool Output::_allow_output

protectedinherited

Flag for disabling output.

Definition at line 234 of file Output.h.

Referenced by Output::allowOutput(), OversampleOutput::outputStep(), and Output::outputStep().

_app

MooseApp& MooseObject::_app

protectedinherited

The MooseApp this object is associated with.

Definition at line 174 of file MooseObject.h.

Referenced by GridPartitioner::_do_partition(), AB2PredictorCorrector::AB2PredictorCorrector(), Executioner::addAttributeReporter(), FEProblemBase::addMaterialHelper(), FEProblemBase::addMultiApp(), FEProblemBase::addOutput(), FEProblemBase::allowOutput(), AStableDirk4::AStableDirk4(), FileMesh::buildMesh(), MeshGeneratorMesh::buildMesh(), MooseMesh::buildMeshBaseObject(), FEProblemBase::checkNonlinearConvergence(), OversampleOutput::cloneMesh(), FEProblemBase::computeJacobianTags(), FEProblemBase::computeResidualTags(), Console::Console(), TimeStepper::constrainStep(), MultiApp::createApp(), DumpObjectsProblem::dumpObjectHelper(), DumpObjectsProblem::dumpVariableHelper(), EigenExecutionerBase::EigenExecutionerBase(), EigenKernel::EigenKernel(), NonlinearEigen::execute(), InversePowerMethod::execute(), Transient::execute(), Steady::execute(), FileOutput::FileOutput(), FEProblemBase::forceOutput(), MeshGenerator::getMesh(), MeshGenerator::getMeshByName(), MooseObject::getMooseApp(), GhostingUserObject::GhostingUserObject(), InversePowerMethod::init(), NonlinearEigen::init(), Transient::init(), Steady::init(), MooseMesh::init(), NumPicardIterations::initialize(), TimePeriod::initialSetup(), Console::initialSetup(), MultiApp::initialSetup(), FEProblemBase::initialSetup(), AdvancedOutput::initOutputList(), FEProblemBase::initPetscOutput(), AdvancedOutput::initPostprocessorOrVectorPostprocessorLists(), ElementSideNeighborLayers::internalInit(), InversePowerMethod::InversePowerMethod(), MooseObject::mooseError(), NonlinearEigen::NonlinearEigen(), EigenExecutionerBase::normalizeSolution(), PerfGraphOutput::output(), Tecplot::output(), Exodus::output(), Nemesis::output(), ControlOutput::outputActiveObjects(), ControlOutput::outputChangedControls(), ControlOutput::outputControls(), Exodus::outputEmptyTimestep(), Console::outputInput(), Exodus::outputInput(), Exodus::outputNodalVariables(), OversampleOutput::outputStep(), Output::outputStep(), FEProblemBase::outputStep(), Console::outputSystemInformation(), MultiApp::parentOutputPositionChanged(), PerformanceData::PerformanceData(), petscLinearOutput(), petscNonlinearOutput(), Transient::preExecute(), FEProblemBase::projectSolution(), FEProblemBase::setRestartFile(), TransientMultiApp::setupApp(), TimeSequenceStepperBase::setupSequence(), Transient::setupTimeIntegrator(), TransientMultiApp::solveStep(), FEProblemBase::subdomainSetup(), FEProblemBase::theWarehouse(), TimeExtremeValue::TimeExtremeValue(), TimePeriod::TimePeriod(), FEProblemBase::timestepSetup(), Transient::Transient(), and Console::write().

_console

const ConsoleStream ConsoleStreamInterface::_console

inherited

An instance of helper class to write streams to the Console objects.

Definition at line 32 of file ConsoleStreamInterface.h.

Referenced by IterationAdaptiveDT::acceptStep(), SetupRecoverFileBaseAction::act(), Adaptivity::adaptMesh(), FEProblemBase::adaptMesh(), SimplePredictor::apply(), MultiApp::backup(), FEProblemBase::backupMultiApps(), FEProblemBase::checkProblemIntegrity(), IterationAdaptiveDT::computeAdaptiveDT(), Transient::computeConstrainedDT(), NonlinearSystemBase::computeDamping(), IterationAdaptiveDT::computeDT(), IterationAdaptiveDT::computeFailedDT(), IterationAdaptiveDT::computeInterpolationDT(), FEProblemBase::computeResidualTags(), IterationAdaptiveDT::constrainStep(), TimeStepper::constrainStep(), MultiApp::createApp(), FEProblemBase::execMultiApps(), FEProblemBase::execMultiAppTransfers(), MultiAppPostprocessorTransfer::execute(), MultiAppPostprocessorInterpolationTransfer::execute(), MultiAppVariableValueSamplePostprocessorTransfer::execute(), MultiAppPostprocessorToAuxScalarTransfer::execute(), MultiAppScalarToAuxScalarTransfer::execute(), MultiAppVariableValueSampleTransfer::execute(), MultiAppInterpolationTransfer::execute(), MultiAppMeshFunctionTransfer::execute(), MultiAppUserObjectTransfer::execute(), MultiAppNearestNodeTransfer::execute(), MultiAppProjectionTransfer::execute(), MultiAppVectorPostprocessorTransfer::execute(), MultiAppCopyTransfer::execute(), Steady::execute(), MultiAppDTKUserObjectTransfer::execute(), ActionWarehouse::executeActionsWithAction(), ActionWarehouse::executeAllActions(), FEProblemBase::FEProblemBase(), ElementQualityChecker::finalize(), FEProblemBase::finishMultiAppStep(), MultiApp::globalAppToLocal(), InversePowerMethod::init(), NonlinearEigen::init(), Steady::init(), FEProblemBase::initialAdaptMesh(), FEProblemBase::initialSetup(), EigenExecutionerBase::inversePowerIteration(), Transient::keepGoing(), IterationAdaptiveDT::limitDTByFunction(), IterationAdaptiveDT::limitDTToPostprocessorValue(), EigenExecutionerBase::makeBXConsistent(), Console::meshChanged(), MooseObject::mooseDeprecated(), MooseObject::mooseInfo(), MooseObject::mooseWarning(), PerfGraphOutput::output(), DOFMapOutput::output(), VariableResidualNormsDebugOutput::output(), Console::output(), ControlOutput::outputActiveObjects(), ControlOutput::outputChangedControls(), ControlOutput::outputControls(), Console::outputInput(), Console::outputPostprocessors(), Console::outputScalarVariables(), Console::outputSystemInformation(), FEProblemBase::possiblyRebuildGeomSearchPatches(), EigenExecutionerBase::postExecute(), AB2PredictorCorrector::postSolve(), ActionWarehouse::printActionDependencySets(), EigenExecutionerBase::printEigenvalue(), MaterialPropertyDebugOutput::printMaterialMap(), SolutionTimeAdaptiveDT::rejectStep(), DT2::rejectStep(), MultiApp::restore(), FEProblemBase::restoreMultiApps(), SimplePredictor::shouldApply(), NonlinearSystem::solve(), PicardSolve::solve(), LStableDirk2::solve(), LStableDirk3::solve(), ImplicitMidpoint::solve(), ExplicitTVDRK2::solve(), AStableDirk4::solve(), LStableDirk4::solve(), ExplicitRK2::solve(), TransientMultiApp::solveStep(), PicardSolve::solveStep(), DT2::step(), AB2PredictorCorrector::step(), NonlinearEigen::takeStep(), Console::writeTimestepInformation(), Console::writeVariableNorms(), and FEProblemBase::~FEProblemBase().

_current_execute_flag

const ExecFlagType& SetupInterface::_current_execute_flag

protectedinherited

Reference to FEProblemBase.

Definition at line 98 of file SetupInterface.h.

_dt

Real& Output::_dt

protectedinherited

Time step delta.

Definition at line 198 of file Output.h.

Referenced by Output::dt(), and solveSetup().

_dt_old

Real& Output::_dt_old

protectedinherited

Old time step delta.

Definition at line 201 of file Output.h.

Referenced by Output::dtOld(), and Console::writeTimestepInformation().

_enabled

const bool& MooseObject::_enabled

protectedinherited

Reference to the "enable" InputParaemters, used by Controls for toggling on/off MooseObjects.

Definition at line 183 of file MooseObject.h.

Referenced by MooseObject::enabled().

_end_step

int Output::_end_step

protectedinherited

End outputting at this time step.

Definition at line 222 of file Output.h.

Referenced by Output::onInterval().

_end_time

Real Output::_end_time

protectedinherited

End outputting time.

Definition at line 216 of file Output.h.

_es_ptr

EquationSystems* Output::_es_ptr

protectedinherited

Reference the the libMesh::EquationSystems object that contains the data.

Definition at line 177 of file Output.h.

Referenced by AdvancedOutput::initAvailableLists(), OversampleOutput::initOversample(), AdvancedOutput::initShowHideLists(), GMVOutput::output(), Tecplot::output(), VTKOutput::output(), XDA::output(), Output::Output(), Nemesis::output(), Checkpoint::output(), Exodus::outputElementalVariables(), Exodus::outputEmptyTimestep(), Exodus::outputNodalVariables(), and Exodus::outputSetup().

_exec_flags

const std::vector<ExecFlagType> SetupInterface::_exec_flags

protectedinherited

(DEPRECATED) execution flag (when is the object executed/evaluated) TODO: ExecFlagType

Definition at line 95 of file SetupInterface.h.

Referenced by SetupInterface::execBitFlags(), MultiAppTransfer::execFlags(), and SetupInterface::execFlags().

_execute_enum

const ExecFlagEnum& SetupInterface::_execute_enum

protectedinherited

Execute settings for this oejct.

Definition at line 92 of file SetupInterface.h.

Referenced by ChangeOverTimePostprocessor::ChangeOverTimePostprocessor(), and SetupInterface::getExecuteOnEnum().

_execute_on

ExecFlagEnum Output::_execute_on

protectedinherited

The common Execution types; this is used as the default execution type for everything except system information and input.

Definition at line 186 of file Output.h.

Referenced by AdvancedOutput::AdvancedOutput(), Console::Console(), Output::executeOn(), AdvancedOutput::initExecutionTypes(), Console::initialSetup(), Output::Output(), Console::output(), PetscOutput(), PerfGraphOutput::shouldOutput(), Output::shouldOutput(), and solveSetup().

_initialized

bool Output::_initialized

protectedinherited

True if init() has been called.

Definition at line 231 of file Output.h.

Referenced by AdvancedOutput::hasOutputHelper(), Output::initialSetup(), AdvancedOutput::initialSetup(), and Console::output().

_interval

const unsigned int Output::_interval

protectedinherited

The output time step interval.

Definition at line 207 of file Output.h.

Referenced by Output::onInterval().

_is_advanced

bool Output::_is_advanced

protectedinherited

Flag for advanced output testing.

Definition at line 237 of file Output.h.

Referenced by AdvancedOutput::AdvancedOutput(), and Output::isAdvanced().

_linear_dt

Real PetscOutput::_linear_dt

private

Psuedo linear time step.

Definition at line 86 of file PetscOutput.h.

Referenced by petscLinearOutput(), and solveSetup().

_linear_dt_divisor

Real PetscOutput::_linear_dt_divisor

private

Pseudo linear timestep divisor.

Definition at line 98 of file PetscOutput.h.

Referenced by solveSetup().

_linear_end_time

Real PetscOutput::_linear_end_time

private

Linear residual output end time.

Definition at line 110 of file PetscOutput.h.

Referenced by PetscOutput(), and solveSetup().

_linear_iter

PetscInt PetscOutput::_linear_iter

protected

Current linear iteration returned from PETSc.

Definition at line 52 of file PetscOutput.h.

Referenced by Console::output(), and petscLinearOutput().

_linear_start_time

Real PetscOutput::_linear_start_time

private

Linear residual output start time.

Definition at line 104 of file PetscOutput.h.

Referenced by PetscOutput(), and solveSetup().

_linear_time

Real PetscOutput::_linear_time

private

Psuedo linear time.

Definition at line 83 of file PetscOutput.h.

Referenced by petscLinearOutput(), petscNonlinearOutput(), and time().

_mci_feproblem

FEProblemBase& MeshChangedInterface::_mci_feproblem

protectedinherited

Reference to FEProblemBase instance.

Definition at line 42 of file MeshChangedInterface.h.

Referenced by MeshChangedInterface::MeshChangedInterface().

_mesh_ptr

MooseMesh* Output::_mesh_ptr

protectedinherited

A convenience pointer to the current mesh (reference or displaced depending on "use_displaced")

Definition at line 180 of file Output.h.

Referenced by OversampleOutput::cloneMesh(), OversampleOutput::initOversample(), Tecplot::output(), XDA::output(), Output::Output(), Exodus::outputSetup(), and OversampleOutput::updateOversample().

_name

const std::string& MooseObject::_name

protectedinherited

The name of this object, reference to value stored in InputParameters.

Definition at line 180 of file MooseObject.h.

Referenced by ADPiecewiseLinearInterpolationMaterial< compute_stage >::ADPiecewiseLinearInterpolationMaterial(), DerivativeParsedMaterialHelper::assembleDerivatives(), Piecewise::buildFromFile(), Piecewise::buildFromXandY(), Piecewise::buildFromXY(), CentroidMultiApp::fillPositions(), MultiApp::fillPositions(), FunctionDT::FunctionDT(), PiecewiseBase::initialSetup(), MooseObject::name(), PiecewiseBilinear::parse(), Piecewise::Piecewise(), PiecewiseBilinear::PiecewiseBilinear(), PiecewiseLinearInterpolationMaterial::PiecewiseLinearInterpolationMaterial(), PiecewiseBase::setData(), Split::setup(), and VectorPostprocessorFunction::VectorPostprocessorFunction().

_nonlinear_dt

Real PetscOutput::_nonlinear_dt

private

The pseuedo non-linear time step.

Definition at line 80 of file PetscOutput.h.

Referenced by petscNonlinearOutput(), and solveSetup().

_nonlinear_dt_divisor

Real PetscOutput::_nonlinear_dt_divisor

private

Pseudo non-linear timestep divisor.

Definition at line 95 of file PetscOutput.h.

Referenced by solveSetup().

_nonlinear_end_time

Real PetscOutput::_nonlinear_end_time

private

Non-linear residual output end time.

Definition at line 107 of file PetscOutput.h.

Referenced by PetscOutput(), and solveSetup().

_nonlinear_iter

PetscInt PetscOutput::_nonlinear_iter

protected

Current non-linear iteration returned from PETSc.

Definition at line 49 of file PetscOutput.h.

Referenced by Console::output(), and petscNonlinearOutput().

_nonlinear_start_time

Real PetscOutput::_nonlinear_start_time

private

Non-linear residual output start time.

Definition at line 101 of file PetscOutput.h.

Referenced by PetscOutput(), and solveSetup().

_nonlinear_time

Real PetscOutput::_nonlinear_time

private

The psuedo non-linear time.

Definition at line 77 of file PetscOutput.h.

Referenced by petscNonlinearOutput(), solveSetup(), and time().

_norm

Real PetscOutput::_norm

protected

Current norm returned from PETSc.

Definition at line 46 of file PetscOutput.h.

Referenced by Console::output(), petscLinearOutput(), and petscNonlinearOutput().

_num

unsigned int Output::_num

protectedinherited

The number of outputs written.

Definition at line 204 of file Output.h.

_on_linear_residual

bool PetscOutput::_on_linear_residual

private

True if current output calls is on the linear residual (used by time())

Definition at line 89 of file PetscOutput.h.

Referenced by petscLinearOutput(), and time().

_on_nonlinear_residual

bool PetscOutput::_on_nonlinear_residual

private

True if current output call is on the non-linear residual (used by time())

Definition at line 92 of file PetscOutput.h.

Referenced by petscNonlinearOutput(), and time().

_output_step_timer

PerfID Output::_output_step_timer

protectedinherited

Timers.

Definition at line 246 of file Output.h.

Referenced by OversampleOutput::outputStep(), and Output::outputStep().

_pars

const InputParameters& MooseObject::_pars

protectedinherited

Parameters of this object, references the InputParameters stored in the InputParametersWarehouse.

Definition at line 171 of file MooseObject.h.

Referenced by GridPartitioner::_do_partition(), BreakMeshByBlockGeneratorBase::BreakMeshByBlockGeneratorBase(), BreakMeshByBlockBase::checkInputParameter(), PetscExternalPartitioner::clone(), GridPartitioner::clone(), Console::Console(), Eigenvalue::Eigenvalue(), Eigenvalue::execute(), FEProblemSolve::FEProblemSolve(), FunctionMaterialBase::FunctionMaterialBase(), ParsedMaterialHelper::functionParse(), ExtraNodesetGenerator::generate(), MooseObject::getParam(), GeneralUserObject::getPostprocessorValue(), InitialConditionBase::getUserObject(), InitialConditionBase::getUserObjectBase(), GeneralUserObject::getVectorPostprocessorValue(), Transient::init(), AdvancedOutput::initExecutionTypes(), Console::initialSetup(), MooseObject::isParamValid(), AddExtraNodeset::modify(), MooseObject::paramError(), MooseObject::parameters(), MooseObject::paramInfo(), MooseObject::paramWarning(), and Transient::setupTimeIntegrator().

_perf_graph

PerfGraph& PerfGraphInterface::_perf_graph

protectedinherited

The performance graph to add to.

Definition at line 66 of file PerfGraphInterface.h.

Referenced by PerfGraphData::getValue(), and PerfGraphInterface::registerTimedSection().

_pg_params

const InputParameters* PerfGraphInterface::_pg_params

protectedinherited

Params.

Definition at line 63 of file PerfGraphInterface.h.

_prefix

std::string PerfGraphInterface::_prefix

protectedinherited

A prefix to use for all sections.

Definition at line 69 of file PerfGraphInterface.h.

Referenced by PerfGraphInterface::registerTimedSection().

_problem_ptr

FEProblemBase* Output::_problem_ptr

protectedinherited

Pointer the the FEProblemBase object for output object (use this)

Definition at line 168 of file Output.h.

Referenced by AdvancedOutput::initAvailableLists(), Console::initialSetup(), OversampleOutput::initOversample(), AdvancedOutput::initPostprocessorOrVectorPostprocessorLists(), AdvancedOutput::initShowHideLists(), Nemesis::meshChanged(), Console::meshChanged(), DOFMapOutput::output(), VariableResidualNormsDebugOutput::output(), SolutionHistory::output(), CSV::output(), Output::Output(), TopResidualDebugOutput::output(), TableOutput::outputPostprocessors(), Nemesis::outputPostprocessors(), Exodus::outputPostprocessors(), TableOutput::outputScalarVariables(), Nemesis::outputScalarVariables(), Exodus::outputScalarVariables(), Console::outputSystemInformation(), TableOutput::outputVectorPostprocessors(), MaterialPropertyDebugOutput::printMaterialMap(), TopResidualDebugOutput::printTopResiduals(), solveSetup(), OversampleOutput::updateOversample(), and Console::writeVariableNorms().

_sequence

bool Output::_sequence

protectedinherited

Flag for forcing call to outputSetup() with every call to output() (restartable)

Definition at line 183 of file Output.h.

_start_step

int Output::_start_step

protectedinherited

Start outputting at this time step.

Definition at line 219 of file Output.h.

Referenced by Output::onInterval().

_start_time

Real Output::_start_time

protectedinherited

Start outputting time.

Definition at line 213 of file Output.h.

Referenced by Output::onInterval().

_sync_only

bool Output::_sync_only

protectedinherited

Flag for only executing at sync times.

Definition at line 228 of file Output.h.

Referenced by Output::onInterval().

_sync_times

std::set<Real> Output::_sync_times

protectedinherited

Sync times for this outputter.

Definition at line 210 of file Output.h.

Referenced by Output::onInterval().

_t_step

int& Output::_t_step

protectedinherited

The current time step.

Definition at line 195 of file Output.h.

Referenced by Output::onInterval(), Console::output(), TableOutput::outputVectorPostprocessors(), Output::time(), Output::timeOld(), and Output::timeStep().

_t_tol

Real Output::_t_tol

protectedinherited

Time checking tolerance.

Definition at line 225 of file Output.h.

Referenced by solveSetup().

_time

Real& Output::_time

protectedinherited

The current time for output purposes.

Definition at line 189 of file Output.h.

Referenced by Output::onInterval(), AdvancedOutput::output(), TableOutput::outputVectorPostprocessors(), solveSetup(), Output::time(), and AdvancedOutput::wantOutput().

_time_old

Real& Output::_time_old

protectedinherited

The old time.

Definition at line 192 of file Output.h.

Referenced by solveSetup(), and Output::timeOld().

_transient

bool Output::_transient

protectedinherited

Transient flag (true = transient)

Definition at line 171 of file Output.h.

Referenced by Output::dt(), Output::dtOld(), Output::time(), Output::timeOld(), and Console::writeTimestepInformation().

_type

const std::string& MooseObject::_type

protectedinherited

The type of this object (the Class name)

Definition at line 177 of file MooseObject.h.

Referenced by FEProblemBase::init(), and MooseObject::type().

_use_displaced

bool Output::_use_displaced

protectedinherited

Flag for using displaced mesh.

Definition at line 174 of file Output.h.

Referenced by Output::Output().

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The documentation for this class was generated from the following files:

• include/outputs/PetscOutput.h
• src/outputs/PetscOutput.C