AuxKernel.C

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//* This file is part of the MOOSE framework
//* https://mooseframework.inl.gov
//*
//* All rights reserved, see COPYRIGHT for full restrictions
//* https://github.com/idaholab/moose/blob/master/COPYRIGHT
//*
//* Licensed under LGPL 2.1, please see LICENSE for details
//* https://www.gnu.org/licenses/lgpl-2.1.html
 
#include "AuxKernel.h"
 
// local includes
#include "FEProblem.h"
#include "SubProblem.h"
#include "AuxiliarySystem.h"
#include "MooseTypes.h"
#include "Assembly.h"
#include "MortarNodalAuxKernel.h"
 
#include "libmesh/numeric_vector.h"
#include "libmesh/dof_map.h"
#include "libmesh/quadrature.h"
#include "libmesh/boundary_info.h"
 
template <typename ComputeValueType>
InputParameters
AuxKernelTempl<ComputeValueType>::validParams()
{
  InputParameters params = AuxKernelBase::validParams();
 
  if (typeid(AuxKernelTempl<ComputeValueType>).name() == typeid(VectorAuxKernel).name())
    params.registerBase("VectorAuxKernel");
  if (typeid(AuxKernelTempl<ComputeValueType>).name() == typeid(ArrayAuxKernel).name())
    params.registerBase("ArrayAuxKernel");
 
  params.registerSystemAttributeName("AuxKernel");
 
  return params;
}
 
template <typename ComputeValueType>
AuxKernelTempl<ComputeValueType>::AuxKernelTempl(const InputParameters & parameters)
  : AuxKernelBase(parameters),
    MooseVariableInterface<ComputeValueType>(
        this,
        parameters.getCheckedPointerParam<SystemBase *>("_sys")
            ->getVariable(parameters.get<THREAD_ID>("_tid"),
                          parameters.get<AuxVariableName>("variable"))
            .isNodal(),
        "variable",
        Moose::VarKindType::VAR_AUXILIARY,
        std::is_same<Real, ComputeValueType>::value
            ? Moose::VarFieldType::VAR_FIELD_STANDARD
            : (std::is_same<RealVectorValue, ComputeValueType>::value
                   ? Moose::VarFieldType::VAR_FIELD_VECTOR
                   : Moose::VarFieldType::VAR_FIELD_ARRAY)),
 
    _var(_aux_sys.getActualFieldVariable<ComputeValueType>(
        _tid, parameters.get<AuxVariableName>("variable"))),
    _nodal(_var.isNodal()),
    _u(_nodal ? _var.nodalValueArray() : _var.sln()),
 
    _test(_bnd ? _var.phiFace() : _var.phi()),
    _q_point(_bnd ? _assembly.qPointsFace() : _assembly.qPoints()),
    _qrule(_bnd ? _assembly.qRuleFace() : _assembly.qRule()),
    _JxW(_bnd ? _assembly.JxWFace() : _assembly.JxW()),
    _coord(_assembly.coordTransformation()),
 
    _current_elem(_assembly.elem()),
    _current_side(_assembly.side()),
    _current_elem_volume(_assembly.elemVolume()),
    _current_side_volume(_assembly.sideElemVolume()),
 
    _current_node(_assembly.node()),
    _current_boundary_id(_assembly.currentBoundaryID()),
    _solution(_aux_sys.solution()),
 
    _current_lower_d_elem(_assembly.lowerDElem())
{
 
  if (!_bnd || _nodal)
    // If we're not boundary restricted then we cannot be a coincident lower-d calculation
    _coincident_lower_d_calc = false;
}
 
template <typename ComputeValueType>
const VariableValue &
AuxKernelTempl<ComputeValueType>::coupledDot(const std::string & var_name, unsigned int comp) const
{
  auto var = getVar(var_name, comp);
  if (var->kind() == Moose::VAR_AUXILIARY)
    mooseError(
        name(),
        ": Unable to couple time derivative of an auxiliary variable into the auxiliary system.");
 
  return Coupleable::coupledDot(var_name, comp);
}
 
template <typename ComputeValueType>
const VariableValue &
AuxKernelTempl<ComputeValueType>::coupledDotDu(const std::string & var_name,
                                               unsigned int comp) const
{
  auto var = getVar(var_name, comp);
  if (var->kind() == Moose::VAR_AUXILIARY)
    mooseError(
        name(),
        ": Unable to couple time derivative of an auxiliary variable into the auxiliary system.");
 
  return Coupleable::coupledDotDu(var_name, comp);
}
 
template <>
void
AuxKernelTempl<Real>::setDofValueHelper(const Real & value)
{
  mooseAssert(_n_shapes == 1,
              "Should only be calling setDofValue if there is one dof for the aux var");
  _var.setDofValue(value, 0);
}
 
template <>
void
AuxKernelTempl<RealVectorValue>::setDofValueHelper(const RealVectorValue &)
{
  mooseError("Not implemented");
}
 
template <typename ComputeValueType>
void
AuxKernelTempl<ComputeValueType>::insert()
{
  mooseAssert(_coincident_lower_d_calc.has_value(),
              "We should have set _coincident_lower_d_calc by now");
  if (_coincident_lower_d_calc.value())
    _var.insertLower(_aux_sys.solution());
  else
    _var.insert(_aux_sys.solution());
}
 
template <typename ComputeValueType>
void
AuxKernelTempl<ComputeValueType>::compute()
{
  precalculateValue();
 
  if (isNodal()) /* nodal variables */
  {
    if (_var.isNodalDefined())
    {
      _qp = 0;
      ComputeValueType value = computeValue();
      // update variable data, which is referenced by other kernels, so the value is up-to-date
      _var.setNodalValue(value);
    }
  }
  else /* elemental variables */
  {
    _n_shapes =
        _coincident_lower_d_calc.value() ? _var.dofIndicesLower().size() : _var.numberOfDofs();
 
    if (_n_shapes == 1) /* p0 */
    {
      ComputeValueType value = 0;
      for (_qp = 0; _qp < _qrule->n_points(); _qp++)
        value += _JxW[_qp] * _coord[_qp] * computeValue();
      value /= (_bnd ? _current_side_volume : _current_elem_volume);
      if (_var.isFV())
        setDofValueHelper(value);
      else
      {
        // update the variable data referenced by other kernels.
        // Note that this will update the values at the quadrature points too
        // (because this is an Elemental variable)
        if (_coincident_lower_d_calc.value())
        {
          _local_sol.resize(1);
          if constexpr (std::is_same<Real, ComputeValueType>::value)
            _local_sol(0) = value;
          else
            mooseAssert(false, "We should not enter the single dof branch with a vector variable");
          _var.setLowerDofValues(_local_sol);
        }
        else
          _var.setNodalValue(value);
      }
    }
    else /* high-order */
    {
      _local_re.resize(_n_shapes);
      _local_re.zero();
      _local_ke.resize(_n_shapes, _n_shapes);
      _local_ke.zero();
 
      const auto & test = _coincident_lower_d_calc.value() ? _var.phiLower() : _test;
 
      // assemble the local mass matrix and the load
      for (unsigned int i = 0; i < test.size(); i++)
        for (_qp = 0; _qp < _qrule->n_points(); _qp++)
        {
          ComputeValueType t = _JxW[_qp] * _coord[_qp] * test[i][_qp];
          _local_re(i) += t * computeValue();
          for (unsigned int j = 0; j < test.size(); j++)
            _local_ke(i, j) += t * test[j][_qp];
        }
      // mass matrix is always SPD but in case of boundary restricted, it will be rank deficient
      _local_sol.resize(_n_shapes);
      if (_bnd)
        _local_ke.svd_solve(_local_re, _local_sol);
      else
        _local_ke.cholesky_solve(_local_re, _local_sol);
 
      _coincident_lower_d_calc.value() ? _var.setLowerDofValues(_local_sol)
                                       : _var.setDofValues(_local_sol);
    }
  }
}
 
template <>
void
AuxKernelTempl<RealEigenVector>::compute()
{
  precalculateValue();
 
  if (isNodal()) /* nodal variables */
  {
    if (_var.isNodalDefined())
    {
      _qp = 0;
      RealEigenVector value = computeValue();
      // update variable data, which is referenced by other kernels, so the value is up-to-date
      _var.setNodalValue(value);
    }
  }
  else /* elemental variables */
  {
    mooseAssert(
        _var.numberOfDofs() % _var.count() == 0,
        "The number of degrees of freedom should be cleanly divisible by the variable count");
    _n_shapes = _var.numberOfDofs() / _var.count();
    if (_n_shapes == 1) /* p0 */
    {
      RealEigenVector value = RealEigenVector::Zero(_var.count());
      for (_qp = 0; _qp < _qrule->n_points(); _qp++)
        value += _JxW[_qp] * _coord[_qp] * computeValue();
      value /= (_bnd ? _current_side_volume : _current_elem_volume);
      // update the variable data referenced by other kernels.
      // Note that this will update the values at the quadrature points too
      // (because this is an Elemental variable)
      _var.setNodalValue(value);
    }
    else /* high-order */
    {
      _local_re.resize(_n_shapes);
      for (unsigned int i = 0; i < _local_re.size(); ++i)
        _local_re(i) = RealEigenVector::Zero(_var.count());
      _local_ke.resize(_n_shapes, _n_shapes);
      _local_ke.zero();
 
      // assemble the local mass matrix and the load
      for (unsigned int i = 0; i < _test.size(); i++)
        for (_qp = 0; _qp < _qrule->n_points(); _qp++)
        {
          Real t = _JxW[_qp] * _coord[_qp] * _test[i][_qp];
          _local_re(i) += t * computeValue();
          for (unsigned int j = 0; j < _test.size(); j++)
            _local_ke(i, j) += t * _test[j][_qp];
        }
 
      // mass matrix is always SPD
      _local_sol.resize(_n_shapes);
      for (unsigned int i = 0; i < _local_re.size(); ++i)
        _local_sol(i) = RealEigenVector::Zero(_var.count());
      DenseVector<Number> re(_n_shapes);
      DenseVector<Number> sol(_n_shapes);
      for (unsigned int i = 0; i < _var.count(); ++i)
      {
        for (unsigned int j = 0; j < _n_shapes; ++j)
          re(j) = _local_re(j)(i);
 
        if (_bnd)
          _local_ke.svd_solve(re, sol);
        else
          _local_ke.cholesky_solve(re, sol);
 
        for (unsigned int j = 0; j < _n_shapes; ++j)
          _local_sol(j)(i) = sol(j);
      }
 
      _var.setDofValues(_local_sol);
    }
  }
}
 
template <typename ComputeValueType>
const typename OutputTools<ComputeValueType>::VariableValue &
AuxKernelTempl<ComputeValueType>::uOld() const
{
  if (_sys.solutionStatesInitialized())
    mooseError("The solution states have already been initialized when calling ",
               type(),
               "::uOld().\n\n",
               "Make sure to call uOld() within the object constructor.");
 
  return _nodal ? _var.nodalValueOldArray() : _var.slnOld();
}
 
template <typename ComputeValueType>
const typename OutputTools<ComputeValueType>::VariableValue &
AuxKernelTempl<ComputeValueType>::uOlder() const
{
  if (_sys.solutionStatesInitialized())
    mooseError("The solution states have already been initialized when calling ",
               type(),
               "::uOlder().\n\n",
               "Make sure to call uOlder() within the object constructor.");
 
  return _nodal ? _var.nodalValueOlderArray() : _var.slnOlder();
}
 
template <typename ComputeValueType>
bool
AuxKernelTempl<ComputeValueType>::isMortar()
{
  return dynamic_cast<MortarNodalAuxKernelTempl<ComputeValueType> *>(this) != nullptr;
}
 
template <typename ComputeValueType>
void
AuxKernelTempl<ComputeValueType>::determineWhetherCoincidentLowerDCalc()
{
  mooseAssert(_bnd && !isNodal(),
              "We can never be a lower-dimensional calculation if we are not boundary restricted "
              "or if we are a nodal auxiliary kernel");
 
  // MOOSE maintains three copies of finite element data. One is for the current canonical element,
  // one is for the element neighbor, and one is for a lower-d element. These three copies have
  // supported all of MOOSE's finite element use cases to date, including mortar. For AuxKernel, we
  // do not use the neighbor data copy, but we do use the other two copies. The numberOfDofs() API
  // returns the number of degrees of freedom for the canonical element. If there are none, then
  // there must be degrees of freedom associated with the lower-d element
  _coincident_lower_d_calc = !_var.numberOfDofs();
 
  if (_coincident_lower_d_calc.value())
  {
    static const std::string lower_error = "Make sure that the lower-d variable lives on a "
                                           "lower-d block that is a superset of the boundary";
    if (!_current_lower_d_elem)
      mooseError("No lower-dimensional element. ", lower_error);
    if (!_var.dofIndicesLower().size())
      mooseError("No degrees of freedom. ", lower_error);
  }
}
 
template <typename ComputeValueType>
std::set<MooseVariableFieldBase *>
AuxKernelTempl<ComputeValueType>::checkVariables(
    const libMesh::Node & node, const std::set<MooseVariableFieldBase *> & vars_to_check)
{
  if (node.n_dofs(_var.sys().number(), _var.number()))
    return MooseVariableDependencyInterface::checkVariables(node, vars_to_check);
  else
    // the aux kernel early returns if _var has no dofs
    return {};
}
 
// Explicitly instantiates the three versions of the AuxKernelTempl class
template class AuxKernelTempl<Real>;
template class AuxKernelTempl<RealVectorValue>;
template class AuxKernelTempl<RealEigenVector>;