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ComputeMarkerThread Class Reference

#include <ComputeMarkerThread.h>

Inheritance diagram for ComputeMarkerThread:
[legend]

Public Member Functions

 ComputeMarkerThread (FEProblemBase &fe_problem)
 
 ComputeMarkerThread (ComputeMarkerThread &x, Threads::split split)
 
virtual ~ComputeMarkerThread ()
 
virtual void subdomainChanged () override
 Called every time the current subdomain changes (i.e. More...
 
virtual void onElement (const Elem *elem) override
 Assembly of the element (not including surface assembly) More...
 
virtual void onBoundary (const Elem *elem, unsigned int side, BoundaryID bnd_id) override
 Called when doing boundary assembling. More...
 
virtual void onInternalSide (const Elem *elem, unsigned int side) override
 Called when doing internal edge assembling. More...
 
virtual void postElement (const Elem *) override
 Called after the element assembly is done (including surface assembling) More...
 
virtual void post () override
 Called after the element range loop. More...
 
void join (const ComputeMarkerThread &)
 
virtual void caughtMooseException (MooseException &e) override
 Called if a MooseException is caught anywhere during the computation. More...
 
virtual bool keepGoing () override
 Whether or not the loop should continue. More...
 
virtual void preElement (const Elem *elem) override
 Called before the element assembly. More...
 
virtual void preInternalSide (const Elem *elem, unsigned int side) override
 Called before evaluations on an element internal side. More...
 
virtual void neighborSubdomainChanged () override
 Called every time the neighbor subdomain changes (i.e. More...
 
void operator() (const ConstElemRange &range, bool bypass_threading=false)
 
virtual void pre ()
 Called before the element range loop. More...
 
virtual void postInternalSide (const Elem *elem, unsigned int side)
 Called after evaluations on an element internal side. More...
 
virtual void onInterface (const Elem *elem, unsigned int side, BoundaryID bnd_id)
 Called when doing interface assembling. More...
 

Protected Attributes

FEProblemBase_fe_problem
 
AuxiliarySystem_aux_sys
 
const MooseObjectWarehouse< Marker > & _marker_whs
 Reference to the Marker warhouse in FEProblemBase. More...
 
MooseMesh_mesh
 
THREAD_ID _tid
 
SubdomainID _subdomain
 The subdomain for the current element. More...
 
SubdomainID _old_subdomain
 The subdomain for the last element. More...
 
SubdomainID _neighbor_subdomain
 The subdomain for the current neighbor. More...
 
SubdomainID _old_neighbor_subdomain
 The subdomain for the last neighbor. More...
 

Detailed Description

Definition at line 19 of file ComputeMarkerThread.h.

Constructor & Destructor Documentation

◆ ComputeMarkerThread() [1/2]

ComputeMarkerThread::ComputeMarkerThread ( FEProblemBase fe_problem)

Definition at line 21 of file ComputeMarkerThread.C.

23  _fe_problem(fe_problem),
24  _aux_sys(fe_problem.getAuxiliarySystem()),
26 {
27 }
FEProblemBase & _fe_problem
const MooseObjectWarehouse< Marker > & _marker_whs
Reference to the Marker warhouse in FEProblemBase.
AuxiliarySystem & _aux_sys
AuxiliarySystem & getAuxiliarySystem()
const MooseObjectWarehouse< Marker > & getMarkerWarehouse()

◆ ComputeMarkerThread() [2/2]

ComputeMarkerThread::ComputeMarkerThread ( ComputeMarkerThread x,
Threads::split  split 
)

Definition at line 30 of file ComputeMarkerThread.C.

32  _fe_problem(x._fe_problem),
33  _aux_sys(x._aux_sys),
34  _marker_whs(x._marker_whs)
35 {
36 }
FEProblemBase & _fe_problem
const MooseObjectWarehouse< Marker > & _marker_whs
Reference to the Marker warhouse in FEProblemBase.
static PetscErrorCode Vec x
std::vector< std::string > split(const std::string &str, const std::string &delimiter)
Python like split function for strings.
Definition: MooseUtils.C:784
AuxiliarySystem & _aux_sys

◆ ~ComputeMarkerThread()

ComputeMarkerThread::~ComputeMarkerThread ( )
virtual

Definition at line 38 of file ComputeMarkerThread.C.

38 {}

Member Function Documentation

◆ caughtMooseException()

void ThreadedElementLoop< ConstElemRange >::caughtMooseException ( MooseException e)
overridevirtualinherited

Called if a MooseException is caught anywhere during the computation.

The single input parameter taken is a MooseException object.

Reimplemented from ThreadedElementLoopBase< ConstElemRange >.

Definition at line 76 of file ThreadedElementLoop.h.

77 {
78  Threads::spin_mutex::scoped_lock lock(threaded_element_mutex);
79 
80  std::string what(e.what());
82 }
virtual const char * what() const
Get out the error message.
virtual void setException(const std::string &message)
Set an exception.
static Threads::spin_mutex threaded_element_mutex
This mutex is used by all derived classes of the ThreadedElementLoop.

◆ join()

void ComputeMarkerThread::join ( const ComputeMarkerThread )

Definition at line 105 of file ComputeMarkerThread.C.

106 {
107 }

◆ keepGoing()

virtual bool ThreadedElementLoop< ConstElemRange >::keepGoing ( )
inlineoverridevirtualinherited

Whether or not the loop should continue.

Returns
true to keep going, false to stop.

Reimplemented from ThreadedElementLoopBase< ConstElemRange >.

Definition at line 44 of file ThreadedElementLoop.h.

44 { return !_fe_problem.hasException(); }
virtual bool hasException()
Whether or not an exception has occurred.

◆ neighborSubdomainChanged()

void ThreadedElementLoop< ConstElemRange >::neighborSubdomainChanged ( )
overridevirtualinherited

Called every time the neighbor subdomain changes (i.e.

the subdomain of this neighbor is not the same as the subdomain of the last neighbor). Beware of over-using this! You might think that you can do some expensive stuff in here and get away with it... but there are applications that have TONS of subdomains....

Reimplemented from ThreadedElementLoopBase< ConstElemRange >.

Definition at line 100 of file ThreadedElementLoop.h.

101 {
104 }
virtual void neighborSubdomainSetup(SubdomainID subdomain, THREAD_ID tid)
Base class for assembly-like calculations.

◆ onBoundary()

void ComputeMarkerThread::onBoundary ( const Elem *  elem,
unsigned int  side,
BoundaryID  bnd_id 
)
overridevirtual

Called when doing boundary assembling.

Parameters
elem- The element we are checking is on the boundary.
side- The side of the element in question.
bnd_id- ID of the boundary we are at

Reimplemented from ThreadedElementLoopBase< ConstElemRange >.

Definition at line 84 of file ComputeMarkerThread.C.

85 {
86 }

◆ onElement()

void ComputeMarkerThread::onElement ( const Elem *  elem)
overridevirtual

Assembly of the element (not including surface assembly)

Parameters
elem- active element

Reimplemented from ThreadedElementLoopBase< ConstElemRange >.

Definition at line 57 of file ComputeMarkerThread.C.

58 {
59  _fe_problem.prepare(elem, _tid);
61 
62  // Set up Sentinel class so that, even if reinitMaterials() throws, we
63  // still remember to swap back during stack unwinding.
65 
67 
69  {
70  const std::vector<std::shared_ptr<Marker>> & markers =
72  for (const auto & marker : markers)
73  marker->computeMarker();
74  }
75 
76  {
77  Threads::spin_mutex::scoped_lock lock(Threads::spin_mtx);
78  for (auto * var : _aux_sys._elem_vars[_tid])
79  var->insert(_aux_sys.solution());
80  }
81 }
virtual void prepare(const Elem *elem, THREAD_ID tid) override
FEProblemBase & _fe_problem
bool hasActiveBlockObjects(THREAD_ID tid=0) const
const std::map< SubdomainID, std::vector< std::shared_ptr< T > > > & getActiveBlockObjects(THREAD_ID tid=0) const
const MooseObjectWarehouse< Marker > & _marker_whs
Reference to the Marker warhouse in FEProblemBase.
virtual void reinitElem(const Elem *elem, THREAD_ID tid) override
virtual void reinitMaterials(SubdomainID blk_id, THREAD_ID tid, bool swap_stateful=true)
AuxiliarySystem & _aux_sys
virtual void swapBackMaterials(THREAD_ID tid)
virtual NumericVector< Number > & solution() override
std::vector< std::vector< MooseVariableFEBase * > > _elem_vars
SubdomainID _subdomain
The subdomain for the current element.
The "SwapBackSentinel" class&#39;s destructor guarantees that FEProblemBase::swapBackMaterials{Face,Neighbor}() is called even when an exception is thrown from FEProblemBase::reinitMaterials{Face,Neighbor}.

◆ onInterface()

void ThreadedElementLoopBase< ConstElemRange >::onInterface ( const Elem *  elem,
unsigned int  side,
BoundaryID  bnd_id 
)
virtualinherited

Called when doing interface assembling.

Parameters
elem- Element we are on
side- local side number of the element 'elem'
bnd_id- ID of the interface we are at

Reimplemented in ComputeUserObjectsThread, ComputeResidualThread, and ComputeJacobianThread.

Definition at line 309 of file ThreadedElementLoopBase.h.

312 {
313 }

◆ onInternalSide()

void ComputeMarkerThread::onInternalSide ( const Elem *  elem,
unsigned int  side 
)
overridevirtual

Called when doing internal edge assembling.

Parameters
elem- Element we are on
side- local side number of the element 'elem'

Reimplemented from ThreadedElementLoopBase< ConstElemRange >.

Definition at line 89 of file ComputeMarkerThread.C.

90 {
91 }

◆ operator()()

void ThreadedElementLoopBase< ConstElemRange >::operator() ( const ConstElemRange &  range,
bool  bypass_threading = false 
)
inherited

Definition at line 173 of file ThreadedElementLoopBase.h.

174 {
175  try
176  {
177  try
178  {
179  ParallelUniqueId puid;
180  _tid = bypass_threading ? 0 : puid.id;
181 
182  pre();
183 
186  typename RangeType::const_iterator el = range.begin();
187  for (el = range.begin(); el != range.end(); ++el)
188  {
189  if (!keepGoing())
190  break;
191 
192  const Elem * elem = *el;
193 
194  preElement(elem);
195 
197  _subdomain = elem->subdomain_id();
198  if (_subdomain != _old_subdomain)
200 
201  onElement(elem);
202 
203  for (unsigned int side = 0; side < elem->n_sides(); side++)
204  {
205  std::vector<BoundaryID> boundary_ids = _mesh.getBoundaryIDs(elem, side);
206 
207  if (boundary_ids.size() > 0)
208  for (std::vector<BoundaryID>::iterator it = boundary_ids.begin();
209  it != boundary_ids.end();
210  ++it)
211  onBoundary(elem, side, *it);
212 
213  const Elem * neighbor = elem->neighbor_ptr(side);
214  if (neighbor != nullptr)
215  {
216  preInternalSide(elem, side);
217 
219  _neighbor_subdomain = neighbor->subdomain_id();
222 
223  onInternalSide(elem, side);
224 
225  if (boundary_ids.size() > 0)
226  for (std::vector<BoundaryID>::iterator it = boundary_ids.begin();
227  it != boundary_ids.end();
228  ++it)
229  onInterface(elem, side, *it);
230 
231  postInternalSide(elem, side);
232  }
233  } // sides
234  postElement(elem);
235 
236  } // range
237 
238  post();
239  }
240  catch (libMesh::LogicError & e)
241  {
242  throw MooseException("We caught a libMesh error");
243  }
244  }
245  catch (MooseException & e)
246  {
248  }
249 }
virtual bool keepGoing()
Whether or not the loop should continue.
virtual void onElement(const Elem *elem)
Assembly of the element (not including surface assembly)
virtual void pre()
Called before the element range loop.
virtual void subdomainChanged()
Called every time the current subdomain changes (i.e.
virtual void neighborSubdomainChanged()
Called every time the neighbor subdomain changes (i.e.
virtual void preInternalSide(const Elem *elem, unsigned int side)
Called before evaluations on an element internal side.
virtual void postInternalSide(const Elem *elem, unsigned int side)
Called after evaluations on an element internal side.
const SubdomainID INVALID_BLOCK_ID
Definition: MooseTypes.C:16
virtual void postElement(const Elem *elem)
Called after the element assembly is done (including surface assembling)
virtual void onInterface(const Elem *elem, unsigned int side, BoundaryID bnd_id)
Called when doing interface assembling.
SubdomainID _old_neighbor_subdomain
The subdomain for the last neighbor.
virtual void onInternalSide(const Elem *elem, unsigned int side)
Called when doing internal edge assembling.
Provides a way for users to bail out of the current solve.
virtual void caughtMooseException(MooseException &)
Called if a MooseException is caught anywhere during the computation.
std::vector< BoundaryID > getBoundaryIDs(const Elem *const elem, const unsigned short int side) const
Returns a vector of boundary IDs for the requested element on the requested side. ...
Definition: MooseMesh.C:2155
SubdomainID _subdomain
The subdomain for the current element.
SubdomainID _old_subdomain
The subdomain for the last element.
virtual void post()
Called after the element range loop.
virtual void preElement(const Elem *elem)
Called before the element assembly.
SubdomainID _neighbor_subdomain
The subdomain for the current neighbor.
virtual void onBoundary(const Elem *elem, unsigned int side, BoundaryID bnd_id)
Called when doing boundary assembling.

◆ post()

void ComputeMarkerThread::post ( )
overridevirtual

Called after the element range loop.

Reimplemented from ThreadedElementLoopBase< ConstElemRange >.

Definition at line 99 of file ComputeMarkerThread.C.

100 {
102 }
FEProblemBase & _fe_problem
virtual void clearActiveElementalMooseVariables(THREAD_ID tid) override
Clear the active elemental MooseVariableFEBase.

◆ postElement()

void ComputeMarkerThread::postElement ( const Elem *  elem)
overridevirtual

Called after the element assembly is done (including surface assembling)

Parameters
elem- active element

Reimplemented from ThreadedElementLoopBase< ConstElemRange >.

Definition at line 94 of file ComputeMarkerThread.C.

95 {
96 }

◆ postInternalSide()

void ThreadedElementLoopBase< ConstElemRange >::postInternalSide ( const Elem *  elem,
unsigned int  side 
)
virtualinherited

Called after evaluations on an element internal side.

Parameters
elem- Element we are on
side- local side number of the element 'elem'

Definition at line 297 of file ThreadedElementLoopBase.h.

298 {
299 }

◆ pre()

void ThreadedElementLoopBase< ConstElemRange >::pre ( )
virtualinherited

Called before the element range loop.

Definition at line 253 of file ThreadedElementLoopBase.h.

254 {
255 }

◆ preElement()

void ThreadedElementLoop< ConstElemRange >::preElement ( const Elem *  elem)
overridevirtualinherited

Called before the element assembly.

Parameters
elem- active element

Reimplemented from ThreadedElementLoopBase< ConstElemRange >.

Definition at line 86 of file ThreadedElementLoop.h.

87 {
89 }
virtual void setCurrentSubdomainID(const Elem *elem, THREAD_ID tid) override
Base class for assembly-like calculations.

◆ preInternalSide()

void ThreadedElementLoop< ConstElemRange >::preInternalSide ( const Elem *  elem,
unsigned int  side 
)
overridevirtualinherited

Called before evaluations on an element internal side.

Parameters
elem- Element we are on
side- local side number of the element 'elem'

Reimplemented from ThreadedElementLoopBase< ConstElemRange >.

Definition at line 93 of file ThreadedElementLoop.h.

94 {
96 }
Base class for assembly-like calculations.
virtual void setNeighborSubdomainID(const Elem *elem, unsigned int side, THREAD_ID tid) override

◆ subdomainChanged()

void ComputeMarkerThread::subdomainChanged ( )
overridevirtual

Called every time the current subdomain changes (i.e.

the subdomain of this element is not the same as the subdomain of the last element). Beware of over-using this! You might think that you can do some expensive stuff in here and get away with it... but there are applications that have TONS of subdomains....

Reimplemented from ThreadedElementLoopBase< ConstElemRange >.

Definition at line 41 of file ComputeMarkerThread.C.

42 {
45 
46  std::set<MooseVariableFEBase *> needed_moose_vars;
47  _marker_whs.updateVariableDependency(needed_moose_vars, _tid);
48 
49  for (auto * var : _aux_sys._elem_vars[_tid])
50  var->prepareAux();
51 
54 }
FEProblemBase & _fe_problem
virtual void prepareMaterials(SubdomainID blk_id, THREAD_ID tid)
Add the MooseVariables that the current materials depend on to the dependency list.
virtual void setActiveElementalMooseVariables(const std::set< MooseVariableFEBase *> &moose_vars, THREAD_ID tid) override
Set the MOOSE variables to be reinited on each element.
const MooseObjectWarehouse< Marker > & _marker_whs
Reference to the Marker warhouse in FEProblemBase.
virtual void subdomainSetup(SubdomainID subdomain, THREAD_ID tid)
AuxiliarySystem & _aux_sys
void updateVariableDependency(std::set< MooseVariableFEBase *> &needed_moose_vars, THREAD_ID tid=0) const
Update variable dependency vector.
std::vector< std::vector< MooseVariableFEBase * > > _elem_vars
SubdomainID _subdomain
The subdomain for the current element.
virtual void subdomainSetup(THREAD_ID tid=0) const

Member Data Documentation

◆ _aux_sys

AuxiliarySystem& ComputeMarkerThread::_aux_sys
protected

Definition at line 40 of file ComputeMarkerThread.h.

Referenced by onElement(), and subdomainChanged().

◆ _fe_problem

FEProblemBase& ComputeMarkerThread::_fe_problem
protected

Definition at line 39 of file ComputeMarkerThread.h.

Referenced by onElement(), post(), and subdomainChanged().

◆ _marker_whs

const MooseObjectWarehouse<Marker>& ComputeMarkerThread::_marker_whs
protected

Reference to the Marker warhouse in FEProblemBase.

Definition at line 43 of file ComputeMarkerThread.h.

Referenced by onElement(), and subdomainChanged().

◆ _mesh

MooseMesh& ThreadedElementLoopBase< ConstElemRange >::_mesh
protectedinherited

Definition at line 138 of file ThreadedElementLoopBase.h.

◆ _neighbor_subdomain

SubdomainID ThreadedElementLoopBase< ConstElemRange >::_neighbor_subdomain
protectedinherited

The subdomain for the current neighbor.

Definition at line 148 of file ThreadedElementLoopBase.h.

◆ _old_neighbor_subdomain

SubdomainID ThreadedElementLoopBase< ConstElemRange >::_old_neighbor_subdomain
protectedinherited

The subdomain for the last neighbor.

Definition at line 151 of file ThreadedElementLoopBase.h.

◆ _old_subdomain

SubdomainID ThreadedElementLoopBase< ConstElemRange >::_old_subdomain
protectedinherited

The subdomain for the last element.

Definition at line 145 of file ThreadedElementLoopBase.h.

◆ _subdomain

SubdomainID ThreadedElementLoopBase< ConstElemRange >::_subdomain
protectedinherited

◆ _tid

THREAD_ID ThreadedElementLoopBase< ConstElemRange >::_tid
protectedinherited

Definition at line 139 of file ThreadedElementLoopBase.h.

Referenced by ComputeFullJacobianThread::computeFaceJacobian(), ComputeJacobianThread::computeFaceJacobian(), ComputeFullJacobianThread::computeInternalFaceJacobian(), ComputeJacobianThread::computeInternalFaceJacobian(), ComputeFullJacobianThread::computeInternalInterFaceJacobian(), ComputeJacobianThread::computeInternalInterFaceJacobian(), ComputeFullJacobianThread::computeJacobian(), ComputeJacobianThread::computeJacobian(), ComputeJacobianThread::onBoundary(), ComputeResidualThread::onBoundary(), ComputeMaterialsObjectThread::onBoundary(), ComputeUserObjectsThread::onBoundary(), onElement(), ComputeElemDampingThread::onElement(), ComputeJacobianThread::onElement(), ComputeIndicatorThread::onElement(), ComputeResidualThread::onElement(), ComputeMaterialsObjectThread::onElement(), ComputeUserObjectsThread::onElement(), ComputeJacobianThread::onInterface(), ComputeResidualThread::onInterface(), ComputeUserObjectsThread::onInterface(), ComputeJacobianThread::onInternalSide(), ComputeIndicatorThread::onInternalSide(), ComputeResidualThread::onInternalSide(), ComputeMaterialsObjectThread::onInternalSide(), ComputeUserObjectsThread::onInternalSide(), post(), ComputeMaterialsObjectThread::post(), ComputeJacobianThread::post(), ComputeIndicatorThread::post(), ComputeResidualThread::post(), ComputeUserObjectsThread::post(), ComputeJacobianThread::postElement(), ComputeResidualThread::postElement(), ComputeJacobianBlocksThread::postElement(), ComputeUserObjectsThread::queryBoundary(), ComputeUserObjectsThread::querySubdomain(), subdomainChanged(), ComputeJacobianThread::subdomainChanged(), ComputeIndicatorThread::subdomainChanged(), ComputeResidualThread::subdomainChanged(), ComputeMaterialsObjectThread::subdomainChanged(), and ComputeUserObjectsThread::subdomainChanged().


The documentation for this class was generated from the following files: