PhysicsBasedPreconditioner Class Reference

Implements a segregated solve preconditioner. More...

#include <PhysicsBasedPreconditioner.h>

Inheritance diagram for PhysicsBasedPreconditioner:

Public Member Functions
	PhysicsBasedPreconditioner (const InputParameters &params)
	Constructor. More...
virtual	~PhysicsBasedPreconditioner ()
void	addSystem (unsigned int var, std::vector< unsigned int > off_diag, PreconditionerType type=AMG_PRECOND)
	Add a diagonal system + possibly off-diagonals ones as well, also specifying type of preconditioning. More...
virtual void	apply (const NumericVector< Number > &x, NumericVector< Number > &y)
	Computes the preconditioned vector "y" based on input "x". More...
virtual void	clear ()
	Release all memory and clear data structures. More...
virtual void	init ()
	Initialize data structures if not done so already. More...
virtual void	setup ()
	This is called every time the "operator might have changed". More...
const std::string &	type () const
	Get the type of this object. More...
const std::string &	name () const
	Get the name of the object. More...
const InputParameters &	parameters () const
	Get the parameters of the object. More...
template<typename T >
const T &	getParam (const std::string &name) const
	Retrieve a parameter for the object. More...
template<typename T >
T	getCheckedPointerParam (const std::string &name, const std::string &error_string="") const
	Verifies that the requested parameter exists and is not NULL and returns it to the caller. More...
bool	isParamValid (const std::string &name) const
	Test if the supplied parameter is valid. More...
MooseApp &	getMooseApp () const
	Get the MooseApp this object is associated with. More...
virtual bool	enabled () const
	Return the enabled status of the object. More...
template<typename... Args>
void	paramError (const std::string &param, Args... args)
	Emits an error prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message. More...
template<typename... Args>
void	paramWarning (const std::string &param, Args... args)
	Emits a warning prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message. More...
template<typename... Args>
void	paramInfo (const std::string &param, Args... args)
	Emits an informational message prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message. More...
template<typename... Args>
void	mooseError (Args &&... args) const
template<typename... Args>
void	mooseWarning (Args &&... args) const
template<typename... Args>
void	mooseDeprecated (Args &&... args) const
template<typename... Args>
void	mooseInfo (Args &&... args) const

Static Public Member Functions
static void	copyVarValues (MeshBase &mesh, const unsigned int from_system, const unsigned int from_var, const NumericVector< Number > &from_vector, const unsigned int to_system, const unsigned int to_var, NumericVector< Number > &to_vector)
	Helper function for copying values associated with variables in vectors from two different systems. More...

Public Attributes
const ConsoleStream	_console
	An instance of helper class to write streams to the Console objects. More...

Protected Member Functions
template<typename T >
T &	declareRestartableData (std::string data_name)
	Declare a piece of data as "restartable". More...
template<typename T >
T &	declareRestartableData (std::string data_name, const T &init_value)
	Declare a piece of data as "restartable" and initialize it. More...
template<typename T >
T &	declareRestartableDataWithContext (std::string data_name, void *context)
	Declare a piece of data as "restartable". More...
template<typename T >
T &	declareRestartableDataWithContext (std::string data_name, const T &init_value, void *context)
	Declare a piece of data as "restartable" and initialize it. More...
template<typename T >
T &	declareRecoverableData (std::string data_name)
	Declare a piece of data as "recoverable". More...
template<typename T >
T &	declareRecoverableData (std::string data_name, const T &init_value)
	Declare a piece of data as "restartable" and initialize it. More...
template<typename T >
T &	declareRestartableDataWithObjectName (std::string data_name, std::string object_name)
	Declare a piece of data as "restartable". More...
template<typename T >
T &	declareRestartableDataWithObjectNameWithContext (std::string data_name, std::string object_name, void *context)
	Declare a piece of data as "restartable". More...
PerfID	registerTimedSection (const std::string &section_name, const unsigned int level)
	Call to register a named section for timing. More...

Protected Attributes
NonlinearSystemBase &	_nl
	The nonlinear system this PBP is associated with (convenience reference) More...
std::vector< LinearImplicitSystem * >	_systems
	List of linear system that build up the preconditioner. More...
std::vector< std::unique_ptr< Preconditioner< Number > > >	_preconditioners
	Holds one Preconditioner object per small system to solve. More...
std::vector< unsigned int >	_solve_order
	Holds the order the blocks are solved for. More...
std::vector< PreconditionerType >	_pre_type
	Which preconditioner to use for each solve. More...
std::vector< std::vector< unsigned int > >	_off_diag
	Holds which off diagonal blocks to compute. More...
std::vector< std::vector< SparseMatrix< Number > * > >	_off_diag_mats
	Holds pointers to the off-diagonal matrices. More...
PerfID	_init_timer
	Timers. More...
PerfID	_apply_timer
FEProblemBase &	_fe_problem
	Subproblem this preconditioner is part of. More...
const InputParameters &	_pars
	Parameters of this object, references the InputParameters stored in the InputParametersWarehouse. More...
MooseApp &	_app
	The MooseApp this object is associated with. More...
const std::string &	_type
	The type of this object (the Class name) More...
const std::string &	_name
	The name of this object, reference to value stored in InputParameters. More...
const bool &	_enabled
	Reference to the "enable" InputParaemters, used by Controls for toggling on/off MooseObjects. More...
const InputParameters *	_pg_params
	Params. More...
PerfGraph &	_perf_graph
	The performance graph to add to. More...
std::string	_prefix
	A prefix to use for all sections. More...

Detailed Description

Implements a segregated solve preconditioner.

Definition at line 34 of file PhysicsBasedPreconditioner.h.

Constructor & Destructor Documentation

PhysicsBasedPreconditioner()

PhysicsBasedPreconditioner::PhysicsBasedPreconditioner

(

const InputParameters &

params

)

Constructor.

Initializes PhysicsBasedPreconditioner data structures

Definition at line 58 of file PhysicsBasedPreconditioner.C.

  : MoosePreconditioner(params),
    Preconditioner<Number>(MoosePreconditioner::_communicator),
    _nl(_fe_problem.getNonlinearSystemBase()),
    _init_timer(registerTimedSection("init", 2)),
    _apply_timer(registerTimedSection("apply", 1))
{
  unsigned int num_systems = _nl.system().n_vars();
  _systems.resize(num_systems);
  _preconditioners.resize(num_systems);
  _off_diag.resize(num_systems);
  _off_diag_mats.resize(num_systems);
  _pre_type.resize(num_systems);

  { // Setup the Coupling Matrix so MOOSE knows what we're doing
    NonlinearSystemBase & nl = _fe_problem.getNonlinearSystemBase();
    unsigned int n_vars = nl.nVariables();

    // The coupling matrix is held and released by FEProblemBase, so it is not released in this
    // object
    std::unique_ptr<CouplingMatrix> cm = libmesh_make_unique<CouplingMatrix>(n_vars);

    bool full = false; // getParam<bool>("full"); // TODO: add a FULL option for PBP

    if (!full)
    {
      // put 1s on diagonal
      for (unsigned int i = 0; i < n_vars; i++)
        (*cm)(i, i) = 1;

      // off-diagonal entries
      std::vector<std::vector<unsigned int>> off_diag(n_vars);
      for (unsigned int i = 0; i < getParam<std::vector<std::string>>("off_diag_row").size(); i++)
      {
        unsigned int row =
            nl.getVariable(0, getParam<std::vector<std::string>>("off_diag_row")[i]).number();
        unsigned int column =
            nl.getVariable(0, getParam<std::vector<std::string>>("off_diag_column")[i]).number();
        (*cm)(row, column) = 1;
      }

      // TODO: handle coupling entries between NL-vars and SCALAR-vars
    }
    else
    {
      for (unsigned int i = 0; i < n_vars; i++)
        for (unsigned int j = 0; j < n_vars; j++)
          (*cm)(i, j) = 1;
    }

    _fe_problem.setCouplingMatrix(std::move(cm));
  }

  // PC types
  const std::vector<std::string> & pc_types = getParam<std::vector<std::string>>("preconditioner");
  for (unsigned int i = 0; i < num_systems; i++)
    _pre_type[i] = Utility::string_to_enum<PreconditionerType>(pc_types[i]);

  // solve order
  const std::vector<std::string> & solve_order = getParam<std::vector<std::string>>("solve_order");
  _solve_order.resize(solve_order.size());
  for (unsigned int i = 0; i < solve_order.size(); i++)
    _solve_order[i] = _nl.system().variable_number(solve_order[i]);

  // diag and off-diag systems
  unsigned int n_vars = _nl.system().n_vars();

  // off-diagonal entries
  const std::vector<std::string> & odr = getParam<std::vector<std::string>>("off_diag_row");
  const std::vector<std::string> & odc = getParam<std::vector<std::string>>("off_diag_column");
  std::vector<std::vector<unsigned int>> off_diag(n_vars);
  for (unsigned int i = 0; i < odr.size(); i++)
  {
    unsigned int row = _nl.system().variable_number(odr[i]);
    unsigned int column = _nl.system().variable_number(odc[i]);
    off_diag[row].push_back(column);
  }
  // Add all of the preconditioning systems
  for (unsigned int var = 0; var < n_vars; var++)
    addSystem(var, off_diag[var], _pre_type[var]);

  _nl.nonlinearSolver()->attach_preconditioner(this);

  if (_fe_problem.solverParams()._type != Moose::ST_JFNK)
    mooseError("PBP must be used with JFNK solve type");
}

~PhysicsBasedPreconditioner()

PhysicsBasedPreconditioner::~PhysicsBasedPreconditioner ( )

virtual

Definition at line 145 of file PhysicsBasedPreconditioner.C.

{ this->clear(); }

Member Function Documentation

addSystem()

void PhysicsBasedPreconditioner::addSystem	(	unsigned int	var,
		std::vector< unsigned int >	off_diag,
		PreconditionerType	type = AMG_PRECOND
	)

Add a diagonal system + possibly off-diagonals ones as well, also specifying type of preconditioning.

Definition at line 148 of file PhysicsBasedPreconditioner.C.

Referenced by PhysicsBasedPreconditioner().

{
  std::string var_name = _nl.system().variable_name(var);

  LinearImplicitSystem & precond_system =
      _fe_problem.es().add_system<LinearImplicitSystem>(var_name + "_system");
  precond_system.assemble_before_solve = false;

  const std::set<SubdomainID> * active_subdomains = _nl.getVariableBlocks(var);
  precond_system.add_variable(
      var_name + "_prec", _nl.system().variable(var).type(), active_subdomains);

  _systems[var] = &precond_system;
  _pre_type[var] = type;

  _off_diag_mats[var].resize(off_diag.size());
  for (unsigned int i = 0; i < off_diag.size(); i++)
  {
    // Add the matrix to hold the off-diagonal piece
    _off_diag_mats[var][i] = &precond_system.add_matrix(_nl.system().variable_name(off_diag[i]));
  }

  _off_diag[var] = off_diag;
}

apply()

void PhysicsBasedPreconditioner::apply ( const NumericVector< Number > &  x, NumericVector< Number > &  y  )

virtual

Computes the preconditioned vector "y" based on input "x".

Usually by solving Py=x to get the action of P^-1 x.

Definition at line 248 of file PhysicsBasedPreconditioner.C.

{
  TIME_SECTION(_apply_timer);

  const unsigned int num_systems = _systems.size();

  MooseMesh & mesh = _fe_problem.mesh();

  // Zero out the solution vectors
  for (unsigned int sys = 0; sys < num_systems; sys++)
    _systems[sys]->solution->zero();

  // Loop over solve order
  for (unsigned int i = 0; i < _solve_order.size(); i++)
  {
    unsigned int system_var = _solve_order[i];

    LinearImplicitSystem & u_system = *_systems[system_var];

    // Copy rhs from the big system into the small one
    MoosePreconditioner::copyVarValues(
        mesh, _nl.system().number(), system_var, x, u_system.number(), 0, *u_system.rhs);

    // Modify the RHS by subtracting off the matvecs of the solutions for the other preconditioning
    // systems with the off diagonal blocks in this system.
    for (unsigned int diag = 0; diag < _off_diag[system_var].size(); diag++)
    {
      unsigned int coupled_var = _off_diag[system_var][diag];
      LinearImplicitSystem & coupled_system = *_systems[coupled_var];
      SparseMatrix<Number> & off_diag = *_off_diag_mats[system_var][diag];
      NumericVector<Number> & rhs = *u_system.rhs;

      // This next bit computes rhs -= A*coupled_solution
      // It does what it does because there is no vector_mult_sub()
      rhs.close();
      rhs.scale(-1.0);
      rhs.close();
      off_diag.vector_mult_add(rhs, *coupled_system.solution);
      rhs.close();
      rhs.scale(-1.0);
      rhs.close();
    }

    // Apply the preconditioner to the small system
    _preconditioners[system_var]->apply(*u_system.rhs, *u_system.solution);

    // Copy solution from small system into the big one
    // copyVarValues(mesh,system,0,*u_system.solution,0,system_var,y);
  }

  // Copy the solutions out
  for (unsigned int system_var = 0; system_var < num_systems; system_var++)
  {
    LinearImplicitSystem & u_system = *_systems[system_var];

    MoosePreconditioner::copyVarValues(
        mesh, u_system.number(), 0, *u_system.solution, _nl.system().number(), system_var, y);
  }

  y.close();
}

clear()

void PhysicsBasedPreconditioner::clear ( )

virtual

Release all memory and clear data structures.

Definition at line 311 of file PhysicsBasedPreconditioner.C.

Referenced by ~PhysicsBasedPreconditioner().

{
}

copyVarValues()

void MoosePreconditioner::copyVarValues ( MeshBase &  mesh, const unsigned int  from_system, const unsigned int  from_var, const NumericVector< Number > &  from_vector, const unsigned int  to_system, const unsigned int  to_var, NumericVector< Number > &  to_vector  )

staticinherited

Helper function for copying values associated with variables in vectors from two different systems.

Definition at line 51 of file MoosePreconditioner.C.

Referenced by apply().

{
  for (auto & node : mesh.local_node_ptr_range())
  {
    unsigned int n_comp = node->n_comp(from_system, from_var);

    mooseAssert(node->n_comp(from_system, from_var) == node->n_comp(to_system, to_var),
                "Number of components does not match in each system");

    for (unsigned int i = 0; i < n_comp; i++)
    {
      dof_id_type from_dof = node->dof_number(from_system, from_var, i);
      dof_id_type to_dof = node->dof_number(to_system, to_var, i);

      to_vector.set(to_dof, from_vector(from_dof));
    }
  }

  for (auto & elem : as_range(mesh.local_elements_begin(), mesh.local_elements_end()))
  {
    unsigned int n_comp = elem->n_comp(from_system, from_var);

    mooseAssert(elem->n_comp(from_system, from_var) == elem->n_comp(to_system, to_var),
                "Number of components does not match in each system");

    for (unsigned int i = 0; i < n_comp; i++)
    {
      dof_id_type from_dof = elem->dof_number(from_system, from_var, i);
      dof_id_type to_dof = elem->dof_number(to_system, to_var, i);

      to_vector.set(to_dof, from_vector(from_dof));
    }
  }
}

declareRecoverableData() [1/2]

template<typename T >

T & Restartable::declareRecoverableData ( std::string  data_name )

protectedinherited

Declare a piece of data as "recoverable".

This means that in the event of a recovery this piece of data will be restored back to its previous value.

Note - this data will NOT be restored on Restart!

NOTE: This returns a reference! Make sure you store it in a reference!

Parameters

data_name

The name of the data (usually just use the same name as the member variable)

Definition at line 269 of file Restartable.h.

{
  std::string full_name = _restartable_system_name + "/" + _restartable_name + "/" + data_name;

  registerRecoverableDataOnApp(full_name);

  return declareRestartableDataWithContext<T>(data_name, nullptr);
}

declareRecoverableData() [2/2]

template<typename T >

T & Restartable::declareRecoverableData ( std::string  data_name, const T &  init_value  )

protectedinherited

Declare a piece of data as "restartable" and initialize it.

This means that in the event of a restart this piece of data will be restored back to its previous value.

Note - this data will NOT be restored on Restart!

NOTE: This returns a reference! Make sure you store it in a reference!

Parameters

data_name	The name of the data (usually just use the same name as the member variable)
init_value	The initial value of the data

Definition at line 280 of file Restartable.h.

{
  std::string full_name = _restartable_system_name + "/" + _restartable_name + "/" + data_name;

  registerRecoverableDataOnApp(full_name);

  return declareRestartableDataWithContext<T>(data_name, init_value, nullptr);
}

declareRestartableData() [1/2]

template<typename T >

T & Restartable::declareRestartableData ( std::string  data_name )

protectedinherited

Declare a piece of data as "restartable".

This means that in the event of a restart this piece of data will be restored back to its previous value.

NOTE: This returns a reference! Make sure you store it in a reference!

Parameters

data_name

The name of the data (usually just use the same name as the member variable)

Definition at line 202 of file Restartable.h.

{
  return declareRestartableDataWithContext<T>(data_name, nullptr);
}

declareRestartableData() [2/2]

template<typename T >

T & Restartable::declareRestartableData ( std::string  data_name, const T &  init_value  )

protectedinherited

Declare a piece of data as "restartable" and initialize it.

This means that in the event of a restart this piece of data will be restored back to its previous value.

NOTE: This returns a reference! Make sure you store it in a reference!

Parameters

data_name	The name of the data (usually just use the same name as the member variable)
init_value	The initial value of the data

Definition at line 209 of file Restartable.h.

{
  return declareRestartableDataWithContext<T>(data_name, init_value, nullptr);
}

declareRestartableDataWithContext() [1/2]

template<typename T >

T & Restartable::declareRestartableDataWithContext ( std::string  data_name, void *  context  )

protectedinherited

Declare a piece of data as "restartable".

This means that in the event of a restart this piece of data will be restored back to its previous value.

NOTE: This returns a reference! Make sure you store it in a reference!

Parameters

data_name	The name of the data (usually just use the same name as the member variable)
context	Context pointer that will be passed to the load and store functions

Definition at line 216 of file Restartable.h.

{
  std::string full_name = _restartable_system_name + "/" + _restartable_name + "/" + data_name;
  auto data_ptr = libmesh_make_unique<RestartableData<T>>(full_name, context);
  T & restartable_data_ref = data_ptr->get();

  registerRestartableDataOnApp(full_name, std::move(data_ptr), _restartable_tid);

  return restartable_data_ref;
}

declareRestartableDataWithContext() [2/2]

template<typename T >

T & Restartable::declareRestartableDataWithContext ( std::string  data_name, const T &  init_value, void *  context  )

protectedinherited

Declare a piece of data as "restartable" and initialize it.

This means that in the event of a restart this piece of data will be restored back to its previous value.

NOTE: This returns a reference! Make sure you store it in a reference!

Parameters

data_name	The name of the data (usually just use the same name as the member variable)
init_value	The initial value of the data
context	Context pointer that will be passed to the load and store functions

Definition at line 229 of file Restartable.h.

{
  std::string full_name = _restartable_system_name + "/" + _restartable_name + "/" + data_name;
  auto data_ptr = libmesh_make_unique<RestartableData<T>>(full_name, context);
  data_ptr->set() = init_value;

  T & restartable_data_ref = data_ptr->get();
  registerRestartableDataOnApp(full_name, std::move(data_ptr), _restartable_tid);

  return restartable_data_ref;
}

declareRestartableDataWithObjectName()

template<typename T >

T & Restartable::declareRestartableDataWithObjectName ( std::string  data_name, std::string  object_name  )

protectedinherited

Declare a piece of data as "restartable".

This means that in the event of a restart this piece of data will be restored back to its previous value.

NOTE: This returns a reference! Make sure you store it in a reference!

Parameters

data_name	The name of the data (usually just use the same name as the member variable)
object_name	A supplied name for the object that is declaring this data.

Definition at line 245 of file Restartable.h.

{
  return declareRestartableDataWithObjectNameWithContext<T>(data_name, object_name, nullptr);
}

declareRestartableDataWithObjectNameWithContext()

template<typename T >

T & Restartable::declareRestartableDataWithObjectNameWithContext ( std::string  data_name, std::string  object_name, void *  context  )

protectedinherited

Declare a piece of data as "restartable".

This means that in the event of a restart this piece of data will be restored back to its previous value.

NOTE: This returns a reference! Make sure you store it in a reference!

Parameters

data_name	The name of the data (usually just use the same name as the member variable)
object_name	A supplied name for the object that is declaring this data.
context	Context pointer that will be passed to the load and store functions

Definition at line 252 of file Restartable.h.

{
  std::string old_name = _restartable_name;

  _restartable_name = object_name;

  T & value = declareRestartableDataWithContext<T>(data_name, context);

  _restartable_name = old_name;

  return value;
}

enabled()

virtual bool MooseObject::enabled ( ) const

inlinevirtualinherited

Return the enabled status of the object.

Reimplemented in EigenKernel.

Definition at line 91 of file MooseObject.h.

Referenced by EigenKernel::enabled().

{ return _enabled; }

getCheckedPointerParam()

template<typename T >

T MooseObject::getCheckedPointerParam ( const std::string &  name, const std::string &  error_string = ""  ) const

inlineinherited

Verifies that the requested parameter exists and is not NULL and returns it to the caller.

The template parameter must be a pointer or an error will be thrown.

Definition at line 72 of file MooseObject.h.

  {
    return parameters().getCheckedPointerParam<T>(name, error_string);
  }

getMooseApp()

MooseApp& MooseObject::getMooseApp ( ) const

inlineinherited

Get the MooseApp this object is associated with.

Definition at line 86 of file MooseObject.h.

Referenced by RestartableDataIO::createBackup(), RestartableDataIO::deserializeRestartableData(), ConsoleUtils::outputMeshInformation(), Resurrector::restartRestartableData(), and RestartableDataIO::restoreBackup().

{ return _app; }

getParam()

template<typename T >

const T & MooseObject::getParam ( const std::string &  name ) const

inherited

Retrieve a parameter for the object.

Parameters

name	The name of the parameter

Returns

The value of the parameter

Definition at line 185 of file MooseObject.h.

Referenced by FEProblemBase::addMaterialHelper(), ConstraintWarehouse::addObject(), BicubicSplineFunction::BicubicSplineFunction(), Piecewise::buildFromXandY(), DerivativeParsedMaterial::DerivativeParsedMaterial(), EigenKernel::EigenKernel(), FEProblemBase::FEProblemBase(), FieldSplitPreconditioner::FieldSplitPreconditioner(), FiniteDifferencePreconditioner::FiniteDifferencePreconditioner(), SideSetsBetweenSubdomainsGenerator::generate(), ExtraNodesetGenerator::generate(), MeshExtruderGenerator::generate(), SideSetsAroundSubdomainGenerator::generate(), GenericConstantRankTwoTensor::GenericConstantRankTwoTensor(), TimeSequenceStepper::init(), AttribThread::initFrom(), BlockRestrictable::initializeBlockRestrictable(), BoundaryRestrictable::initializeBoundaryRestrictable(), Console::initialSetup(), AdvancedOutput::initialSetup(), SideSetsBetweenSubdomains::modify(), AddExtraNodeset::modify(), MeshExtruder::modify(), SideSetsAroundSubdomain::modify(), ParsedAddSideset::ParsedAddSideset(), ParsedAux::ParsedAux(), ParsedGenerateSideset::ParsedGenerateSideset(), ParsedMaterial::ParsedMaterial(), ParsedODEKernel::ParsedODEKernel(), ParsedSubdomainMeshGenerator::ParsedSubdomainMeshGenerator(), ParsedSubdomainMeshModifier::ParsedSubdomainMeshModifier(), PhysicsBasedPreconditioner(), SingleMatrixPreconditioner::SingleMatrixPreconditioner(), TimePeriod::TimePeriod(), and VectorOfPostprocessors::VectorOfPostprocessors().

{
  return InputParameters::getParamHelper(name, _pars, static_cast<T *>(0));
}

init()

void PhysicsBasedPreconditioner::init ( )

virtual

Initialize data structures if not done so already.

Definition at line 176 of file PhysicsBasedPreconditioner.C.

{
  TIME_SECTION(_init_timer);

  // Tell libMesh that this is initialized!
  _is_initialized = true;

  const unsigned int num_systems = _systems.size();

  // If no order was specified, just solve them in increasing order
  if (_solve_order.size() == 0)
  {
    _solve_order.resize(num_systems);
    for (unsigned int i = 0; i < num_systems; i++)
      _solve_order[i] = i;
  }

  // Loop over variables
  for (unsigned int system_var = 0; system_var < num_systems; system_var++)
  {
    LinearImplicitSystem & u_system = *_systems[system_var];

    if (!_preconditioners[system_var])
      _preconditioners[system_var] =
          Preconditioner<Number>::build_preconditioner(MoosePreconditioner::_communicator);

    // we have to explicitly set the matrix in the preconditioner, because h-adaptivity could have
    // changed it and we have to work with the current one
    Preconditioner<Number> * preconditioner = _preconditioners[system_var].get();
    preconditioner->set_matrix(*u_system.matrix);
    preconditioner->set_type(_pre_type[system_var]);

    preconditioner->init();
  }
}

isParamValid()

bool MooseObject::isParamValid ( const std::string &  name ) const

inlineinherited

Test if the supplied parameter is valid.

Parameters

name	The name of the parameter to test

Definition at line 81 of file MooseObject.h.

Referenced by AdvancedOutput::AdvancedOutput(), BicubicSplineFunction::BicubicSplineFunction(), Piecewise::buildFromFile(), Piecewise::buildFromXandY(), DistributedGeneratedMesh::buildMesh(), GeneratedMesh::buildMesh(), LibmeshPartitioner::clone(), OversampleOutput::cloneMesh(), CSVReader::CSVReader(), MultiAppNearestNodeTransfer::execute(), Exodus::Exodus(), FEProblemBase::FEProblemBase(), FileOutput::FileOutput(), MultiApp::fillPositions(), FunctionDT::FunctionDT(), RenameBoundaryGenerator::generate(), ElementSubdomainIDGenerator::generate(), BreakBoundaryOnSubdomainGenerator::generate(), ExtraNodesetGenerator::generate(), LowerDBlockFromSidesetGenerator::generate(), MeshSideSetGenerator::generate(), RenameBlockGenerator::generate(), GeneratedMeshGenerator::generate(), ParsedSubdomainMeshGenerator::generate(), MeshExtruderGenerator::generate(), SubdomainBoundingBoxGenerator::generate(), PatternedMeshGenerator::generate(), MultiAppNearestNodeTransfer::getLocalEntities(), MeshGenerator::getMesh(), MultiAppNearestNodeTransfer::getNearestNode(), IterationAdaptiveDT::init(), EigenExecutionerBase::init(), MooseMesh::init(), AdvancedOutput::initExecutionTypes(), BlockRestrictable::initializeBlockRestrictable(), BoundaryRestrictable::initializeBoundaryRestrictable(), SolutionAux::initialSetup(), MooseParsedVectorFunction::initialSetup(), Console::initialSetup(), Receiver::initialSetup(), SolutionFunction::initialSetup(), MooseParsedGradFunction::initialSetup(), MooseParsedFunction::initialSetup(), AdvancedOutput::initialSetup(), AdvancedOutput::initPostprocessorOrVectorPostprocessorLists(), IterationAdaptiveDT::IterationAdaptiveDT(), LeastSquaresFit::LeastSquaresFit(), LibmeshPartitioner::LibmeshPartitioner(), BreakBoundaryOnSubdomain::modify(), MeshExtruder::modify(), MeshSideSet::modify(), LowerDBlockFromSideset::modify(), AssignElementSubdomainID::modify(), ParsedSubdomainMeshModifier::modify(), RenameBlock::modify(), SubdomainBoundingBox::modify(), MooseMesh::MooseMesh(), EigenExecutionerBase::normalizeSolution(), Output::Output(), PetscOutput::PetscOutput(), Piecewise::Piecewise(), SolutionUserObject::readExodusII(), RenameBlock::RenameBlock(), RenameBlockGenerator::RenameBlockGenerator(), RenameBoundaryGenerator::RenameBoundaryGenerator(), SolutionUserObject::SolutionUserObject(), and TimePeriod::TimePeriod().

{ return _pars.isParamValid(name); }

mooseDeprecated()

template<typename... Args>

void MooseObject::mooseDeprecated ( Args &&...  args ) const

inlineinherited

Definition at line 155 of file MooseObject.h.

Referenced by FEProblemBase::advanceMultiApps(), MultiApp::advanceStep(), MultiApp::appProblem(), MooseMesh::buildSideList(), ChangeOverTimestepPostprocessor::ChangeOverTimestepPostprocessor(), FEProblemBase::computeResidual(), Material::declarePropertyOld(), Material::declarePropertyOlder(), MooseMesh::elem(), MultiAppTransfer::execFlags(), UserForcingFunction::f(), FaceFaceConstraint::FaceFaceConstraint(), FunctionDT::FunctionDT(), RandomICBase::generateRandom(), Control::getExecuteOptions(), Output::getExecuteOptions(), FEProblemBase::getNonlinearSystem(), FEProblemBase::getUserObjects(), FEProblemBase::getVectorPostprocessorValue(), FEProblemBase::getVectorPostprocessorValueOld(), NodalScalarKernel::NodalScalarKernel(), MooseMesh::node(), PercentChangePostprocessor::PercentChangePostprocessor(), MooseMesh::setBoundaryToNormalMap(), and UserForcingFunction::UserForcingFunction().

  {
    moose::internal::mooseDeprecatedStream(_console, false, std::forward<Args>(args)...);
  }

mooseError()

template<typename... Args>

void MooseObject::mooseError ( Args &&...  args ) const

inlineinherited

Definition at line 140 of file MooseObject.h.

Referenced by PetscExternalPartitioner::_do_partition(), GridPartitioner::_do_partition(), FEProblemBase::addConstraint(), FEProblemBase::addInitialCondition(), FEProblem::addLineSearch(), FEProblemBase::addLineSearch(), FEProblemBase::addOutput(), DiracKernel::addPointWithValidId(), FEProblemBase::addPostprocessor(), MooseMesh::addQuadratureNode(), FEProblemBase::addVectorPostprocessor(), Output::advancedExecuteOn(), AllSideSetsByNormalsGenerator::AllSideSetsByNormalsGenerator(), AnnularMesh::AnnularMesh(), AnnularMeshGenerator::AnnularMeshGenerator(), MultiApp::appPostprocessorValue(), MultiApp::appProblem(), MultiApp::appProblemBase(), MultiApp::appUserObjectBase(), DerivativeParsedMaterialHelper::assembleDerivatives(), Function::average(), Axisymmetric2D3DSolutionFunction::Axisymmetric2D3DSolutionFunction(), BicubicSplineFunction::BicubicSplineFunction(), BoundingValueElementDamper::BoundingValueElementDamper(), BoundingValueNodalDamper::BoundingValueNodalDamper(), BoundsAux::BoundsAux(), BreakMeshByBlockGenerator::BreakMeshByBlockGenerator(), BreakMeshByBlockGeneratorBase::BreakMeshByBlockGeneratorBase(), MooseMesh::buildCoarseningMap(), Piecewise::buildFromFile(), Piecewise::buildFromXandY(), Piecewise::buildFromXY(), TiledMesh::buildMesh(), FileMesh::buildMesh(), SpiralAnnularMesh::buildMesh(), DistributedGeneratedMesh::buildMesh(), GeneratedMesh::buildMesh(), ImageMeshGenerator::buildMesh3D(), ImageMesh::buildMesh3D(), MooseMesh::buildRefinementMap(), MooseMesh::buildSideList(), ChangeOverTimePostprocessor::ChangeOverTimePostprocessor(), EigenExecutionerBase::chebyshev(), SubProblem::checkBlockMatProps(), SubProblem::checkBoundaryMatProps(), FEProblemBase::checkCoordinateSystems(), FEProblemBase::checkDependMaterialsHelper(), FEProblemBase::checkDisplacementOrders(), Material::checkExecutionStage(), BreakMeshByBlockBase::checkInputParameter(), Steady::checkIntegrity(), EigenExecutionerBase::checkIntegrity(), ActuallyExplicitEuler::checkLinearConvergence(), FEProblemBase::checkProblemIntegrity(), Material::checkStatefulSanity(), FEProblemBase::checkUserObjects(), LibmeshPartitioner::clone(), MooseMesh::clone(), ComparisonPostprocessor::comparisonIsTrue(), CompositeFunction::CompositeFunction(), ElementLpNormAux::compute(), ElementH1ErrorFunctionAux::compute(), NodalPatchRecovery::compute(), InterfaceKernel::computeElemNeighJacobian(), TimeSequenceStepperBase::computeFailedDT(), IterationAdaptiveDT::computeFailedDT(), TimeStepper::computeFailedDT(), HistogramVectorPostprocessor::computeHistogram(), EqualValueEmbeddedConstraint::computeQpJacobian(), EqualValueEmbeddedConstraint::computeQpOffDiagJacobian(), FEProblemBase::computeResidualInternal(), FEProblemBase::computeResidualTag(), FEProblemBase::computeResidualType(), StatisticsVectorPostprocessor::computeStatValue(), Material::computeSubdomainProperties(), BDF2::computeTimeDerivatives(), ExplicitEuler::computeTimeDerivatives(), ImplicitEuler::computeTimeDerivatives(), NewmarkBeta::computeTimeDerivatives(), CrankNicolson::computeTimeDerivatives(), ActuallyExplicitEuler::computeTimeDerivatives(), LStableDirk2::computeTimeDerivatives(), LStableDirk3::computeTimeDerivatives(), ImplicitMidpoint::computeTimeDerivatives(), ExplicitTVDRK2::computeTimeDerivatives(), AStableDirk4::computeTimeDerivatives(), LStableDirk4::computeTimeDerivatives(), ExplicitRK2::computeTimeDerivatives(), PenetrationAux::computeValue(), ConcentricCircleMesh::ConcentricCircleMesh(), ConcentricCircleMeshGenerator::ConcentricCircleMeshGenerator(), TimeStepper::constrainStep(), AuxKernel::coupledDot(), AuxKernel::coupledDotDu(), CoupledForce::CoupledForce(), DebugResidualAux::DebugResidualAux(), BicubicSplineFunction::derivative(), DerivativeSumMaterial::DerivativeSumMaterial(), DGKernel::DGKernel(), FEProblemBase::duplicateVariableCheck(), EigenProblem::EigenProblem(), Eigenvalues::Eigenvalues(), ElementalVariableValue::ElementalVariableValue(), ElementQualityAux::ElementQualityAux(), MooseMesh::errorIfDistributedMesh(), SolutionUserObject::evalMeshFunction(), SolutionUserObject::evalMeshFunctionGradient(), SolutionUserObject::evalMultiValuedMeshFunction(), SolutionUserObject::evalMultiValuedMeshFunctionGradient(), PerflogDumper::execute(), MultiAppPostprocessorTransfer::execute(), DiscreteElementUserObject::execute(), MultiAppPostprocessorInterpolationTransfer::execute(), MultiAppVariableValueSamplePostprocessorTransfer::execute(), ElementQualityChecker::execute(), NodalValueSampler::execute(), MultiAppNearestNodeTransfer::execute(), PointValue::execute(), MultiAppPostprocessorToAuxScalarTransfer::execute(), MultiAppScalarToAuxScalarTransfer::execute(), MultiAppVariableValueSampleTransfer::execute(), MultiAppInterpolationTransfer::execute(), MultiAppUserObjectTransfer::execute(), FindValueOnLine::execute(), TimeExtremeValue::execute(), VectorPostprocessorComparison::execute(), LeastSquaresFit::execute(), LeastSquaresFitHistory::execute(), FEProblemBase::executeControls(), MultiAppVectorPostprocessorTransfer::executeFromMultiapp(), MultiAppVectorPostprocessorTransfer::executeToMultiapp(), Exodus::Exodus(), FileOutput::FileOutput(), CentroidMultiApp::fillPositions(), MultiApp::fillPositions(), VerifyElementUniqueID::finalize(), VerifyNodalUniqueID::finalize(), DiscreteElementUserObject::finalize(), ElementQualityChecker::finalize(), MemoryUsage::finalize(), PointSamplerBase::finalize(), Transfer::find_sys(), BreakMeshByBlockBase::findFreeBoundaryId(), BreakMeshByBlockGeneratorBase::findFreeBoundaryId(), FunctionDT::FunctionDT(), FunctionMaterialBase::FunctionMaterialBase(), ParsedMaterialHelper::functionParse(), FunctionScalarAux::FunctionScalarAux(), FunctionScalarIC::FunctionScalarIC(), GapValueAux::GapValueAux(), ExtraNodesetGenerator::generate(), ElementSubdomainIDGenerator::generate(), RenameBlockGenerator::generate(), RenameBoundaryGenerator::generate(), StitchedMeshGenerator::generate(), GeneratedMeshGenerator::generate(), MeshExtruderGenerator::generate(), SpiralAnnularMeshGenerator::generate(), SideSetsFromBoundingBoxGenerator::generate(), BoundingBoxNodeSetGenerator::generate(), PatternedMeshGenerator::generate(), GeneratedMesh::GeneratedMesh(), GeneratedMeshGenerator::GeneratedMeshGenerator(), RandomICBase::generateRandom(), GenericConstantMaterial::GenericConstantMaterial(), GenericFunctionMaterial::GenericFunctionMaterial(), MooseMesh::getBoundaryID(), MultiApp::getBoundingBox(), MooseMesh::getCoarseningMap(), Control::getControllableParameterByName(), FEProblemBase::getCoordSystem(), PiecewiseConstant::getDirection(), FEProblemBase::getDistribution(), ElementGenerator::getElemType(), MultiApp::getExecutioner(), FEProblemBase::getFunction(), SolutionUserObject::getLocalVarIndex(), AuxKernel::getMaterialProperty(), AuxKernel::getMaterialPropertyOld(), AuxKernel::getMaterialPropertyOlder(), SubProblem::getMatrixTagID(), AnnularMesh::getMaxInDimension(), DistributedGeneratedMesh::getMaxInDimension(), GeneratedMesh::getMaxInDimension(), FEProblemBase::getMaxQps(), FEProblemBase::getMaxShapeFunctions(), AnnularMesh::getMinInDimension(), DistributedGeneratedMesh::getMinInDimension(), GeneratedMesh::getMinInDimension(), MooseMesh::getMortarInterface(), MooseMesh::getMortarInterfaceByName(), MooseMesh::getNodeBlockIds(), MooseMesh::getNodeList(), FEProblemBase::getNonlinearSystem(), MooseMesh::getPairedBoundaryMapping(), ImageMeshGenerator::GetPixelInfo(), ImageMesh::GetPixelInfo(), MaterialStdVectorAux::getRealValue(), MooseMesh::getRefinementMap(), FEProblemBase::getSampler(), DisplacedProblem::getScalarVariable(), FEProblemBase::getScalarVariable(), DisplacedProblem::getStandardVariable(), FEProblemBase::getStandardVariable(), MooseMesh::getSubdomainBoundaryIds(), MooseMesh::getSubdomainID(), DisplacedProblem::getSystem(), FEProblemBase::getSystem(), FEProblemBase::getUserObject(), FEProblemBase::getUserObjectBase(), PerformanceData::getValue(), Residual::getValue(), PerfGraphData::getValue(), LineValueSampler::getValue(), FindValueOnLine::getValueAtPoint(), SubProblem::getVariableHelper(), SubProblem::getVectorTagID(), DisplacedProblem::getVectorVariable(), FEProblemBase::getVectorVariable(), MultiApp::globalAppToLocal(), MooseParsedVectorFunction::gradient(), AdvancedOutput::hasOutputHelper(), CrankNicolson::init(), CSVTimeSequenceStepper::init(), IterationAdaptiveDT::init(), EigenExecutionerBase::init(), Transient::init(), MooseMesh::init(), FEProblemBase::init(), NumPicardIterations::initialize(), PiecewiseBase::initialSetup(), FullSolveMultiApp::initialSetup(), SolutionAux::initialSetup(), Axisymmetric2D3DSolutionFunction::initialSetup(), Exodus::initialSetup(), SolutionFunction::initialSetup(), SolutionUserObject::initialSetup(), FEProblemBase::initialSetup(), AdvancedOutput::initOutputList(), AdvancedOutput::initShowHideLists(), Material::initStatefulProperties(), Function::integral(), InterfaceKernel::InterfaceKernel(), InterfaceTimeKernel::InterfaceTimeKernel(), EigenExecutionerBase::inversePowerIteration(), InversePowerMethod::InversePowerMethod(), IterationAdaptiveDT::IterationAdaptiveDT(), LayeredSideIntegral::LayeredSideIntegral(), LeastSquaresFit::LeastSquaresFit(), LibmeshPartitioner::LibmeshPartitioner(), LinearCombinationFunction::LinearCombinationFunction(), LinearCombinationPostprocessor::LinearCombinationPostprocessor(), LinearNodalConstraint::LinearNodalConstraint(), LineMaterialSamplerBase< Real >::LineMaterialSamplerBase(), LineSearch::lineSearch(), LineValueSampler::LineValueSampler(), MaterialRealTensorValueAux::MaterialRealTensorValueAux(), MaterialRealVectorValueAux::MaterialRealVectorValueAux(), MaterialStdVectorRealGradientAux::MaterialStdVectorRealGradientAux(), MaterialVectorPostprocessor::MaterialVectorPostprocessor(), Distribution::median(), SubProblem::meshChanged(), MeshExtruder::MeshExtruder(), MeshExtruderGenerator::MeshExtruderGenerator(), MeshSideSetGenerator::MeshSideSetGenerator(), SideSetsFromNormals::modify(), SideSetsFromPoints::modify(), BreakMeshByBlockBase::modify(), MeshExtruder::modify(), AddExtraNodeset::modify(), AssignElementSubdomainID::modify(), SmoothMesh::modify(), AddAllSideSetsByNormals::modify(), ElementDeleterBase::modify(), ParsedSubdomainMeshModifier::modify(), RenameBlock::modify(), ImageSubdomain::modify(), BoundingBoxNodeSet::modify(), OrientedSubdomainBoundingBox::modify(), AddSideSetsFromBoundingBox::modify(), SubdomainBoundingBox::modify(), MooseMesh::MooseMesh(), MultiAppMeshFunctionTransfer::MultiAppMeshFunctionTransfer(), MultiAppPostprocessorTransfer::MultiAppPostprocessorTransfer(), NearestNodeDistanceAux::NearestNodeDistanceAux(), NearestNodeValueAux::NearestNodeValueAux(), RenameBlockGenerator::newBlockID(), RenameBlock::newBlockID(), RenameBlockGenerator::newBlockName(), RenameBlock::newBlockName(), NewmarkBeta::NewmarkBeta(), NodalConstraint::NodalConstraint(), NodalScalarKernel::NodalScalarKernel(), NodalVariableValue::NodalVariableValue(), NumDOFs::NumDOFs(), NumNonlinearIterations::NumNonlinearIterations(), NumVars::NumVars(), ElementSideNeighborLayers::operator()(), ElementPointNeighbors::operator()(), RelationshipManager::operator==(), XDA::output(), SolutionHistory::output(), AdvancedOutput::outputElementalVariables(), AdvancedOutput::outputInput(), AdvancedOutput::outputNodalVariables(), AdvancedOutput::outputPostprocessors(), AdvancedOutput::outputScalarVariables(), Exodus::outputSetup(), AdvancedOutput::outputSystemInformation(), Console::outputVectorPostprocessors(), AdvancedOutput::outputVectorPostprocessors(), MooseObject::paramError(), PiecewiseBilinear::parse(), ParsedAddSideset::ParsedAddSideset(), ParsedAux::ParsedAux(), ParsedGenerateSideset::ParsedGenerateSideset(), ParsedODEKernel::ParsedODEKernel(), ParsedSubdomainMeshGenerator::ParsedSubdomainMeshGenerator(), ParsedSubdomainMeshModifier::ParsedSubdomainMeshModifier(), PatternedMesh::PatternedMesh(), PetscExternalPartitioner::PetscExternalPartitioner(), PhysicsBasedPreconditioner(), Piecewise::Piecewise(), PiecewiseBilinear::PiecewiseBilinear(), PiecewiseLinearInterpolationMaterial::PiecewiseLinearInterpolationMaterial(), PiecewiseMulticonstant::PiecewiseMulticonstant(), PiecewiseMultiInterpolation::PiecewiseMultiInterpolation(), SolutionUserObject::pointValueGradientWrapper(), SolutionUserObject::pointValueWrapper(), LStableDirk2::postResidual(), LStableDirk3::postResidual(), ImplicitMidpoint::postResidual(), ExplicitTVDRK2::postResidual(), LStableDirk4::postResidual(), AStableDirk4::postResidual(), ExplicitRK2::postResidual(), Predictor::Predictor(), SolutionUserObject::readExodusII(), SolutionUserObject::readXda(), EqualValueEmbeddedConstraint::reinitConstraint(), RelativeSolutionDifferenceNorm::RelativeSolutionDifferenceNorm(), RenameBlock::RenameBlock(), RenameBlockGenerator::RenameBlockGenerator(), RenameBoundaryGenerator::RenameBoundaryGenerator(), RinglebMesh::RinglebMesh(), RinglebMeshGenerator::RinglebMeshGenerator(), ScalarComponentIC::ScalarComponentIC(), BicubicSplineFunction::secondDerivative(), FEProblemBase::setCoordSystem(), PiecewiseBase::setData(), EigenProblem::setEigenproblemType(), Sampler::setNumberOfRequiedRandomSeeds(), Exodus::setOutputDimension(), Split::setup(), TransientMultiApp::setupApp(), TimeSequenceStepperBase::setupSequence(), Transient::setupTimeIntegrator(), SideSetsFromBoundingBoxGenerator::SideSetsFromBoundingBoxGenerator(), SideSetsFromNormals::SideSetsFromNormals(), SideSetsFromNormalsGenerator::SideSetsFromNormalsGenerator(), SideSetsFromPoints::SideSetsFromPoints(), SideSetsFromPointsGenerator::SideSetsFromPointsGenerator(), SolutionTimeAdaptiveDT::SolutionTimeAdaptiveDT(), SolutionUserObject::SolutionUserObject(), ActuallyExplicitEuler::solve(), FullSolveMultiApp::solveStep(), UserObject::spatialValue(), SphericalAverage::SphericalAverage(), SpiralAnnularMesh::SpiralAnnularMesh(), SpiralAnnularMeshGenerator::SpiralAnnularMeshGenerator(), StitchedMesh::StitchedMesh(), NodalUserObject::subdomainSetup(), GeneralUserObject::subdomainSetup(), Constraint::subdomainSetup(), Console::systemInfoFlags(), Terminator::Terminator(), TestSetupPostprocessorDataActionFunction::TestSetupPostprocessorDataActionFunction(), ThreadedGeneralUserObject::ThreadedGeneralUserObject(), ThreadedGeneralUserObject::threadJoin(), DiscreteElementUserObject::threadJoin(), GeneralUserObject::threadJoin(), TiledMeshGenerator::TiledMeshGenerator(), Function::timeDerivative(), TimeExtremeValue::TimeExtremeValue(), TimePeriod::TimePeriod(), VectorPostprocessorVisualizationAux::timestepSetup(), MultiAppCopyTransfer::transfer(), MultiAppMeshFunctionTransfer::transferVariable(), Transient::Transient(), TransientMultiApp::TransientMultiApp(), FEProblemBase::uDotDotOldRequested(), FEProblemBase::uDotOldRequested(), EqualValueBoundaryConstraint::updateConstrainedNodes(), SolutionUserObject::updateExodusBracketingTimeIndices(), Axisymmetric2D3DSolutionFunction::value(), ValueRangeMarker::ValueRangeMarker(), ValueThresholdMarker::ValueThresholdMarker(), MultiAppTransfer::variableIntegrityCheck(), VariableTimeIntegrationAux::VariableTimeIntegrationAux(), VectorNodalBC::VectorNodalBC(), VectorOfPostprocessors::VectorOfPostprocessors(), VectorPostprocessorFunction::VectorPostprocessorFunction(), MooseParsedGradFunction::vectorValue(), MooseParsedFunction::vectorValue(), VolumeHistogram::VolumeHistogram(), VTKOutput::VTKOutput(), DOFMapOutput::writeStreamToFile(), and Console::writeStreamToFile().

  {
    std::ostringstream oss;
    moose::internal::mooseStreamAll(oss, std::forward<Args>(args)...);
    std::string msg = oss.str();
    callMooseErrorRaw(msg, &_app);
  }

mooseInfo()

template<typename... Args>

void MooseObject::mooseInfo ( Args &&...  args ) const

inlineinherited

Definition at line 161 of file MooseObject.h.

Referenced by DerivativeParsedMaterialHelper::assembleDerivatives(), AStableDirk4::AStableDirk4(), ExplicitRK2::ExplicitRK2(), ExplicitTVDRK2::ExplicitTVDRK2(), ParsedMaterialHelper::functionsOptimize(), ImplicitMidpoint::ImplicitMidpoint(), LStableDirk2::LStableDirk2(), LStableDirk3::LStableDirk3(), LStableDirk4::LStableDirk4(), and MooseObject::paramInfo().

  {
    moose::internal::mooseInfoStream(_console, std::forward<Args>(args)...);
  }

mooseWarning()

template<typename... Args>

void MooseObject::mooseWarning ( Args &&...  args ) const

inlineinherited

Definition at line 149 of file MooseObject.h.

Referenced by OversampleOutput::cloneMesh(), GapValueAux::computeValue(), PerflogDumper::execute(), ElementQualityChecker::finalize(), FiniteDifferencePreconditioner::FiniteDifferencePreconditioner(), ElementSubdomainIDGenerator::generate(), MooseMesh::getBoundaryIDs(), FEProblemBase::getMaterial(), MooseMesh::getSubdomainIDs(), DerivativeFunctionMaterialBase::initialSetup(), AdvancedOutput::initPostprocessorOrVectorPostprocessorLists(), LeastSquaresFit::LeastSquaresFit(), MaterialVectorPostprocessor::MaterialVectorPostprocessor(), AssignElementSubdomainID::modify(), MultiAppTransfer::MultiAppTransfer(), NewmarkBeta::NewmarkBeta(), NodalPatchRecovery::NodalPatchRecovery(), NonlocalIntegratedBC::NonlocalIntegratedBC(), NonlocalKernel::NonlocalKernel(), Output::Output(), MooseObject::paramWarning(), Executioner::problem(), Material::resetQpProperties(), FEProblemBase::sizeZeroes(), TransientMultiApp::solveStep(), Tecplot::Tecplot(), and Checkpoint::updateCheckpointFiles().

  {
    moose::internal::mooseWarningStream(_console, std::forward<Args>(args)...);
  }

name()

const std::string& MooseObject::name ( ) const

inlineinherited

Get the name of the object.

Returns

The name of the object

Definition at line 51 of file MooseObject.h.

Referenced by GridPartitioner::_do_partition(), FEProblemBase::addADJacobianMaterial(), FEProblemBase::addADResidualMaterial(), Executioner::addAttributeReporter(), DumpObjectsProblem::addAuxKernel(), FEProblemBase::addAuxKernel(), DumpObjectsProblem::addAuxScalarKernel(), FEProblemBase::addAuxScalarKernel(), DumpObjectsProblem::addBoundaryCondition(), FEProblemBase::addBoundaryCondition(), DumpObjectsProblem::addConstraint(), FEProblemBase::addConstraint(), FEProblemBase::addDamper(), DumpObjectsProblem::addDGKernel(), FEProblemBase::addDGKernel(), DumpObjectsProblem::addDiracKernel(), FEProblemBase::addDiracKernel(), FEProblemBase::addDistribution(), DumpObjectsProblem::addFunction(), FEProblemBase::addFunction(), FEProblemBase::addIndicator(), DumpObjectsProblem::addInitialCondition(), FEProblemBase::addInitialCondition(), DumpObjectsProblem::addInterfaceKernel(), FEProblemBase::addInterfaceKernel(), DumpObjectsProblem::addKernel(), FEProblemBase::addKernel(), FEProblemBase::addMarker(), DumpObjectsProblem::addMaterial(), FEProblemBase::addMaterial(), FEProblemBase::addMaterialHelper(), MooseMesh::addMortarInterface(), FEProblemBase::addMultiApp(), DumpObjectsProblem::addNodalKernel(), FEProblemBase::addNodalKernel(), FEProblemBase::addPostprocessor(), FEProblemBase::addPredictor(), FEProblemBase::addSampler(), DumpObjectsProblem::addScalarKernel(), FEProblemBase::addScalarKernel(), FEProblemBase::addTimeIntegrator(), FEProblemBase::addTransfer(), FEProblemBase::addUserObject(), FEProblemBase::addVectorPostprocessor(), Output::advancedExecuteOn(), AllSideSetsByNormalsGenerator::AllSideSetsByNormalsGenerator(), MultiApp::appPostprocessorValue(), MultiApp::appProblem(), MultiApp::appProblemBase(), MultiApp::appUserObjectBase(), DerivativeParsedMaterialHelper::assembleDerivatives(), AStableDirk4::AStableDirk4(), Function::average(), BreakMeshByBlockGenerator::BreakMeshByBlockGenerator(), ChangeOverTimePostprocessor::ChangeOverTimePostprocessor(), FEProblemBase::checkDependMaterialsHelper(), Damper::checkMinDamping(), Material::checkStatefulSanity(), CompositeFunction::CompositeFunction(), Material::computeSubdomainProperties(), VectorPostprocessorVisualizationAux::computeValue(), AuxKernel::coupledCallback(), AuxKernel::coupledDot(), AuxKernel::coupledDotDu(), MultiApp::createApp(), FEProblemBase::declareVectorPostprocessorVector(), DOFMapOutput::demangle(), DerivativeSumMaterial::DerivativeSumMaterial(), DGKernel::DGKernel(), DumpObjectsProblem::dumpObjectHelper(), ElementValueSampler::ElementValueSampler(), MooseMesh::errorIfDistributedMesh(), AB2PredictorCorrector::estimateTimeError(), SolutionUserObject::evalMeshFunction(), SolutionUserObject::evalMeshFunctionGradient(), SolutionUserObject::evalMultiValuedMeshFunction(), SolutionUserObject::evalMultiValuedMeshFunctionGradient(), MultiAppPostprocessorTransfer::execute(), MultiAppPostprocessorInterpolationTransfer::execute(), MultiAppVariableValueSamplePostprocessorTransfer::execute(), StatisticsVectorPostprocessor::execute(), MultiAppNearestNodeTransfer::execute(), PointValue::execute(), MultiAppPostprocessorToAuxScalarTransfer::execute(), MultiAppScalarToAuxScalarTransfer::execute(), MultiAppVariableValueSampleTransfer::execute(), MultiAppMeshFunctionTransfer::execute(), MultiAppInterpolationTransfer::execute(), MultiAppUserObjectTransfer::execute(), MultiAppProjectionTransfer::execute(), MultiAppVectorPostprocessorTransfer::execute(), HistogramVectorPostprocessor::execute(), MultiAppCopyTransfer::execute(), Exodus::Exodus(), FileOutput::FileOutput(), MultiApp::fillPositions(), PointSamplerBase::finalize(), DerivativeParsedMaterialHelper::findMatPropDerivative(), FunctionDT::FunctionDT(), GeneralUserObject::GeneralUserObject(), LowerDBlockFromSidesetGenerator::generate(), StitchedMeshGenerator::generate(), Material::getADMaterialProperty(), MultiApp::getBoundingBox(), MooseObject::getCheckedPointerParam(), Control::getControllableParameterByName(), Control::getControllableValue(), Control::getControllableValueByName(), FEProblemBase::getDistribution(), MultiApp::getExecutioner(), OutputWarehouse::getFileNumbers(), FEProblemBase::getFunction(), SolutionUserObject::getLocalVarIndex(), Marker::getMarkerValue(), FEProblemBase::getMaterial(), NodalPatchRecovery::getMaterialProperty(), AuxKernel::getMaterialProperty(), Material::getMaterialProperty(), SubProblem::getMaterialPropertyBlockNames(), SubProblem::getMaterialPropertyBoundaryNames(), NodalPatchRecovery::getMaterialPropertyOld(), AuxKernel::getMaterialPropertyOld(), Material::getMaterialPropertyOld(), NodalPatchRecovery::getMaterialPropertyOlder(), AuxKernel::getMaterialPropertyOlder(), Material::getMaterialPropertyOlder(), MeshGenerator::getMesh(), MooseMesh::getMortarInterfaceByName(), OutputWarehouse::getOutput(), MooseObject::getParam(), GeneralUserObject::getPostprocessorValue(), AuxKernel::getPostprocessorValue(), FEProblemBase::getPostprocessorValue(), GeneralUserObject::getPostprocessorValueByName(), AuxKernel::getPostprocessorValueByName(), FEProblemBase::getPostprocessorValueOld(), FEProblemBase::getPostprocessorValueOlder(), FEProblemBase::getSampler(), AuxKernel::getScatterVectorPostprocessorValue(), FEProblemBase::getScatterVectorPostprocessorValue(), AuxKernel::getScatterVectorPostprocessorValueByName(), FEProblemBase::getScatterVectorPostprocessorValueOld(), Transient::getTimeStepperName(), AuxKernel::getUserObject(), InitialConditionBase::getUserObject(), FEProblemBase::getUserObject(), InitialConditionBase::getUserObjectBase(), AuxKernel::getUserObjectBase(), FEProblemBase::getUserObjectBase(), AuxKernel::getUserObjectByName(), InitialConditionBase::getUserObjectByName(), GeneralUserObject::getVectorPostprocessorValue(), AuxKernel::getVectorPostprocessorValue(), FEProblemBase::getVectorPostprocessorValue(), GeneralUserObject::getVectorPostprocessorValueByName(), AuxKernel::getVectorPostprocessorValueByName(), FEProblemBase::getVectorPostprocessorValueOld(), FEProblemBase::hasFunction(), AdvancedOutput::hasOutputHelper(), FEProblemBase::hasPostprocessor(), FEProblemBase::hasUserObject(), FEProblemBase::hasVectorPostprocessor(), FEProblemBase::init(), AdvancedOutput::initExecutionTypes(), AttribName::initFrom(), CSVReader::initialize(), StatisticsVectorPostprocessor::initialize(), HistogramVectorPostprocessor::initialize(), MultiAppProjectionTransfer::initialSetup(), DerivativeFunctionMaterialBase::initialSetup(), SolutionUserObject::initialSetup(), AdvancedOutput::initOutputList(), FEProblemBase::initPostprocessorData(), AdvancedOutput::initPostprocessorOrVectorPostprocessorLists(), Material::initStatefulProperties(), FEProblemBase::initVectorPostprocessorData(), Function::integral(), InterfaceKernel::InterfaceKernel(), MooseObject::isParamValid(), LinearCombinationFunction::LinearCombinationFunction(), Marker::Marker(), MatDiffusionBase< Real >::MatDiffusionBase(), MaterialDerivativeTestKernelBase< Real >::MaterialDerivativeTestKernelBase(), MaterialVectorPostprocessor::MaterialVectorPostprocessor(), Distribution::median(), MemoryUsageReporter::MemoryUsageReporter(), MeshSideSetGenerator::MeshSideSetGenerator(), ElementDeleterBase::modify(), MooseVariableInterface< Real >::MooseVariableInterface(), NearestPointBase< LayeredAverage >::NearestPointBase(), NodalValueSampler::NodalValueSampler(), NodalVariableValue::NodalVariableValue(), DOFMapOutput::output(), Output::Output(), AdvancedOutput::outputElementalVariables(), AdvancedOutput::outputInput(), AdvancedOutput::outputNodalVariables(), ConsoleUtils::outputOutputInformation(), Nemesis::outputPostprocessors(), Exodus::outputPostprocessors(), AdvancedOutput::outputPostprocessors(), AdvancedOutput::outputScalarVariables(), AdvancedOutput::outputSystemInformation(), AdvancedOutput::outputVectorPostprocessors(), ParsedAddSideset::ParsedAddSideset(), ParsedAux::ParsedAux(), ParsedGenerateSideset::ParsedGenerateSideset(), ParsedODEKernel::ParsedODEKernel(), ParsedSubdomainMeshGenerator::ParsedSubdomainMeshGenerator(), ParsedSubdomainMeshModifier::ParsedSubdomainMeshModifier(), PointSamplerBase::PointSamplerBase(), Registry::registerObjectsTo(), FEProblemBase::registerRandomInterface(), Material::resetQpProperties(), Sampler::Sampler(), ScalarComponentIC::ScalarComponentIC(), MooseMesh::setBoundaryName(), Control::setControllableValue(), Control::setControllableValueByName(), OutputWarehouse::setFileNumbers(), Exodus::setOutputDimension(), MooseMesh::setSubdomainName(), Split::setup(), TransientMultiApp::setupApp(), SideSetsFromNormalsGenerator::SideSetsFromNormalsGenerator(), SideSetsFromPointsGenerator::SideSetsFromPointsGenerator(), SideValueSampler::SideValueSampler(), TransientMultiApp::solveStep(), UserObject::spatialValue(), SphericalAverage::SphericalAverage(), StitchedMesh::StitchedMesh(), SubProblem::storeBoundaryDelayedCheckMatProp(), SubProblem::storeBoundaryMatPropName(), SubProblem::storeBoundaryZeroMatProp(), SubProblem::storeSubdomainDelayedCheckMatProp(), SubProblem::storeSubdomainMatPropName(), SubProblem::storeSubdomainZeroMatProp(), TaggingInterface::TaggingInterface(), ThreadedGeneralUserObject::ThreadedGeneralUserObject(), TiledMeshGenerator::TiledMeshGenerator(), Function::timeDerivative(), VectorPostprocessorVisualizationAux::timestepSetup(), TransientMultiApp::TransientMultiApp(), MultiAppTransfer::variableIntegrityCheck(), and AdvancedOutput::wantOutput().

{ return _name; }

paramError()

template<typename... Args>

void MooseObject::paramError ( const std::string &  param, Args...  args  )

inlineinherited

Emits an error prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message.

If this object's parameters were not created directly by the Parser, then this function falls back to the normal behavior of mooseError - only printing a message using the given args.

Definition at line 100 of file MooseObject.h.

Referenced by ADKernel< compute_stage >::ADKernel(), DGKernel::DGKernel(), ElementValueSampler::ElementValueSampler(), IntegratedBC::IntegratedBC(), Kernel::Kernel(), NodalBC::NodalBC(), NodalEqualValueConstraint::NodalEqualValueConstraint(), NodalKernel::NodalKernel(), NodalValueSampler::NodalValueSampler(), RandomIC::RandomIC(), and MultiAppCopyTransfer::transfer().

  {
    auto prefix = param + ": ";
    if (!_pars.inputLocation(param).empty())
      prefix = _pars.inputLocation(param) + ": (" + _pars.paramFullpath(param) + "):\n";
    mooseError(prefix, args...);
  }

parameters()

const InputParameters& MooseObject::parameters ( ) const

inlineinherited

Get the parameters of the object.

Returns

The parameters of the object

Definition at line 57 of file MooseObject.h.

Referenced by FEProblemBase::addADJacobianMaterial(), FEProblemBase::addADResidualMaterial(), DumpObjectsProblem::addAuxKernel(), FEProblemBase::addAuxKernel(), DumpObjectsProblem::addAuxScalarKernel(), FEProblemBase::addAuxScalarKernel(), DumpObjectsProblem::addBoundaryCondition(), FEProblemBase::addBoundaryCondition(), DumpObjectsProblem::addConstraint(), FEProblemBase::addConstraint(), FEProblemBase::addDamper(), DumpObjectsProblem::addDGKernel(), FEProblemBase::addDGKernel(), DumpObjectsProblem::addDiracKernel(), FEProblemBase::addDiracKernel(), FEProblemBase::addDistribution(), DumpObjectsProblem::addFunction(), FEProblemBase::addFunction(), FEProblemBase::addIndicator(), DumpObjectsProblem::addInitialCondition(), FEProblemBase::addInitialCondition(), DumpObjectsProblem::addInterfaceKernel(), FEProblemBase::addInterfaceKernel(), DumpObjectsProblem::addKernel(), FEProblemBase::addKernel(), FEProblem::addLineSearch(), FEProblemBase::addMarker(), DumpObjectsProblem::addMaterial(), FEProblemBase::addMaterial(), FEProblemBase::addMaterialHelper(), FEProblemBase::addMultiApp(), DumpObjectsProblem::addNodalKernel(), FEProblemBase::addNodalKernel(), FEProblemBase::addOutput(), FEProblemBase::addPostprocessor(), FEProblemBase::addPredictor(), FEProblemBase::addSampler(), DumpObjectsProblem::addScalarKernel(), FEProblemBase::addScalarKernel(), FEProblemBase::addTimeIntegrator(), FEProblemBase::addTransfer(), FEProblemBase::addUserObject(), FEProblemBase::addVectorPostprocessor(), AdvancedOutput::AdvancedOutput(), assemble_l2(), Moose::assemble_matrix(), AuxKernel::AuxKernel(), AuxScalarKernel::AuxScalarKernel(), BoundsAux::BoundsAux(), LibmeshPartitioner::clone(), OversampleOutput::cloneMesh(), Moose::compute_bounds(), Moose::compute_jacobian(), Moose::compute_nearnullspace(), Moose::compute_nullspace(), Moose::compute_postcheck(), Moose::compute_transpose_nullspace(), Console::Console(), DumpObjectsProblem::deduceNecessaryParameters(), DumpObjectsProblem::dumpObjectHelper(), EigenProblem::EigenProblem(), Eigenvalue::Eigenvalue(), Executioner::Executioner(), Exodus::Exodus(), FEProblem::FEProblem(), GapValueAux::GapValueAux(), MooseObject::getCheckedPointerParam(), MooseMesh::init(), BlockRestrictable::initializeBlockRestrictable(), FEProblemBase::initNullSpaceVectors(), InterfaceKernel::InterfaceKernel(), isValid(), LayeredSideIntegral::LayeredSideIntegral(), MooseVariableInterface< Real >::MooseVariableInterface(), NearestPointBase< LayeredAverage >::NearestPointBase(), NodeFaceConstraint::NodeFaceConstraint(), PenetrationAux::PenetrationAux(), PiecewiseBilinear::PiecewiseBilinear(), PiecewiseLinearInterpolationMaterial::PiecewiseLinearInterpolationMaterial(), MultiAppProjectionTransfer::projectSolution(), RandomIC::RandomIC(), InputParameterWarehouse::removeInputParameters(), FEProblem::setInputParametersFEProblem(), FEProblemBase::setInputParametersFEProblem(), DumpObjectsProblem::stringifyParameters(), and Transient::Transient().

{ return _pars; }

paramInfo()

template<typename... Args>

void MooseObject::paramInfo ( const std::string &  param, Args...  args  )

inlineinherited

Emits an informational message prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message.

If this object's parameters were not created directly by the Parser, then this function falls back to the normal behavior of mooseInfo - only printing a message using the given args.

Definition at line 131 of file MooseObject.h.

  {
    auto prefix = param + ": ";
    if (!_pars.inputLocation(param).empty())
      prefix = _pars.inputLocation(param) + ": (" + _pars.paramFullpath(param) + "):\n";
    mooseInfo(prefix, args...);
  }

paramWarning()

template<typename... Args>

void MooseObject::paramWarning ( const std::string &  param, Args...  args  )

inlineinherited

Emits a warning prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message.

If this object's parameters were not created directly by the Parser, then this function falls back to the normal behavior of mooseWarning - only printing a message using the given args.

Definition at line 115 of file MooseObject.h.

  {
    auto prefix = param + ": ";
    if (!_pars.inputLocation(param).empty())
      prefix = _pars.inputLocation(param) + ": (" + _pars.paramFullpath(param) + "):\n";
    mooseWarning(prefix, args...);
  }

registerTimedSection()

PerfID PerfGraphInterface::registerTimedSection ( const std::string &  section_name, const unsigned int  level  )

protectedinherited

Call to register a named section for timing.

Parameters

section_name	The name of the code section to be timed
level	The importance of the timer - lower is more important (0 will always come out)

Returns

The ID of the section - use when starting timing

Definition at line 50 of file PerfGraphInterface.C.

{
  if (_prefix != "")
    return _perf_graph.registerSection(_prefix + "::" + section_name, level);
  else
    return _perf_graph.registerSection(section_name, level);
}

setup()

void PhysicsBasedPreconditioner::setup ( )

virtual

This is called every time the "operator might have changed".

This is essentially where you need to fill in your preconditioning matrix.

Definition at line 213 of file PhysicsBasedPreconditioner.C.

{
  const unsigned int num_systems = _systems.size();

  std::vector<JacobianBlock *> blocks;

  // Loop over variables
  for (unsigned int system_var = 0; system_var < num_systems; system_var++)
  {
    LinearImplicitSystem & u_system = *_systems[system_var];

    {
      JacobianBlock * block = new JacobianBlock(u_system, *u_system.matrix, system_var, system_var);
      blocks.push_back(block);
    }

    for (unsigned int diag = 0; diag < _off_diag[system_var].size(); diag++)
    {
      unsigned int coupled_var = _off_diag[system_var][diag];
      std::string coupled_name = _nl.system().variable_name(coupled_var);

      JacobianBlock * block =
          new JacobianBlock(u_system, *_off_diag_mats[system_var][diag], system_var, coupled_var);
      blocks.push_back(block);
    }
  }

  _fe_problem.computeJacobianBlocks(blocks);

  // cleanup
  for (auto & block : blocks)
    delete block;
}

type()

const std::string& MooseObject::type ( ) const

inlineinherited

Get the type of this object.

Returns

the name of the type of this object

Definition at line 45 of file MooseObject.h.

Referenced by DumpObjectsProblem::addAuxKernel(), DumpObjectsProblem::addAuxScalarKernel(), FEProblemBase::addAuxScalarVariable(), DumpObjectsProblem::addAuxVariable(), DisplacedProblem::addAuxVariable(), FEProblemBase::addAuxVariable(), DumpObjectsProblem::addBoundaryCondition(), DumpObjectsProblem::addConstraint(), DumpObjectsProblem::addDGKernel(), DumpObjectsProblem::addDiracKernel(), FEProblemBase::addDistribution(), DumpObjectsProblem::addFunction(), FEProblemBase::addFunction(), DumpObjectsProblem::addInitialCondition(), DumpObjectsProblem::addInterfaceKernel(), DumpObjectsProblem::addKernel(), DumpObjectsProblem::addMaterial(), DumpObjectsProblem::addNodalKernel(), FEProblemBase::addPredictor(), FEProblemBase::addSampler(), DumpObjectsProblem::addScalarKernel(), FEProblemBase::addScalarVariable(), addSystem(), FEProblemBase::addTimeIntegrator(), DumpObjectsProblem::addVariable(), DisplacedProblem::addVariable(), FEProblemBase::addVariable(), FEProblemBase::advanceMultiApps(), FEProblemBase::backupMultiApps(), MooseMesh::buildRefinementAndCoarseningMaps(), FEProblemBase::computeAuxiliaryKernels(), ElemElemConstraint::computeElemNeighJacobian(), InterfaceKernel::computeElemNeighJacobian(), DGKernel::computeElemNeighJacobian(), ElemElemConstraint::computeElemNeighResidual(), InterfaceKernel::computeElemNeighResidual(), DGKernel::computeElemNeighResidual(), FEProblemBase::computeMultiAppsDT(), InterfaceKernel::computeOffDiagElemNeighJacobian(), DGKernel::computeOffDiagElemNeighJacobian(), DGConvection::computeQpJacobian(), CoupledTiedValueConstraint::computeQpJacobian(), TiedValueConstraint::computeQpJacobian(), DGDiffusion::computeQpJacobian(), LinearNodalConstraint::computeQpJacobian(), EqualValueBoundaryConstraint::computeQpJacobian(), EqualValueEmbeddedConstraint::computeQpJacobian(), CoupledTiedValueConstraint::computeQpOffDiagJacobian(), EqualValueEmbeddedConstraint::computeQpOffDiagJacobian(), DGConvection::computeQpResidual(), CoupledTiedValueConstraint::computeQpResidual(), TiedValueConstraint::computeQpResidual(), LinearNodalConstraint::computeQpResidual(), DGDiffusion::computeQpResidual(), EqualValueBoundaryConstraint::computeQpResidual(), EqualValueEmbeddedConstraint::computeQpResidual(), FEProblemBase::computeUserObjects(), DisplacedProblem::createQRules(), FEProblemBase::createQRules(), DumpObjectsProblem::deduceNecessaryParameters(), DumpObjectsProblem::dumpObjectHelper(), FEProblemBase::duplicateVariableCheck(), FEProblemBase::execMultiApps(), FEProblemBase::execMultiAppTransfers(), FEProblemBase::execTransfers(), FEProblemBase::finishMultiAppStep(), ElementSubdomainIDGenerator::generate(), ElementGenerator::getElemType(), FEProblemBase::getMaterial(), FEProblemBase::getMaterialData(), FEProblemBase::getTransfers(), AdvancedOutput::hasOutput(), FEProblemBase::incrementMultiAppTStep(), AdvancedOutput::initAvailableLists(), SolutionUserObject::initialSetup(), AdvancedOutput::initShowHideLists(), AssignElementSubdomainID::modify(), ControlOutput::output(), Gnuplot::output(), Exodus::output(), CSV::output(), Console::output(), Nemesis::output(), AdvancedOutput::output(), OversampleOutput::outputStep(), Output::outputStep(), FEProblemBase::outputStep(), FEProblemBase::restoreMultiApps(), FEProblemBase::setCoupling(), FileOutput::shouldOutput(), Output::shouldOutput(), AdvancedOutput::shouldOutput(), DisplacedProblem::updateGeomSearch(), FEProblemBase::updateGeomSearch(), and AdvancedOutput::wantOutput().

{ return _type; }

Member Data Documentation

_app

MooseApp& MooseObject::_app

protectedinherited

The MooseApp this object is associated with.

Definition at line 171 of file MooseObject.h.

Referenced by GridPartitioner::_do_partition(), AB2PredictorCorrector::AB2PredictorCorrector(), Executioner::addAttributeReporter(), FEProblemBase::addMaterialHelper(), FEProblemBase::addMultiApp(), FEProblemBase::addOutput(), FEProblemBase::allowOutput(), AStableDirk4::AStableDirk4(), AlgebraicRelationshipManager::attachAlgebraicFunctorHelper(), RelationshipManager::attachRelationshipManagers(), ElementSideNeighborLayers::attachRelationshipManagersInternal(), ElementPointNeighbors::attachRelationshipManagersInternal(), FileMesh::buildMesh(), MeshGeneratorMesh::buildMesh(), FEProblemBase::checkNonlinearConvergence(), OversampleOutput::cloneMesh(), FEProblemBase::computeJacobianTags(), FEProblemBase::computeResidualTags(), Console::Console(), TimeStepper::constrainStep(), MultiApp::createApp(), DumpObjectsProblem::dumpObjectHelper(), DumpObjectsProblem::dumpVariableHelper(), EigenExecutionerBase::EigenExecutionerBase(), EigenKernel::EigenKernel(), NonlinearEigen::execute(), InversePowerMethod::execute(), Transient::execute(), Steady::execute(), FileOutput::FileOutput(), FEProblemBase::forceOutput(), MeshGenerator::getMesh(), MeshGenerator::getMeshByName(), MooseObject::getMooseApp(), InversePowerMethod::init(), NonlinearEigen::init(), Transient::init(), Steady::init(), MooseMesh::init(), NumPicardIterations::initialize(), TimePeriod::initialSetup(), Console::initialSetup(), MultiApp::initialSetup(), FEProblemBase::initialSetup(), AdvancedOutput::initOutputList(), FEProblemBase::initPetscOutput(), AdvancedOutput::initPostprocessorOrVectorPostprocessorLists(), InversePowerMethod::InversePowerMethod(), MooseObject::mooseError(), MooseMesh::MooseMesh(), NonlinearEigen::NonlinearEigen(), EigenExecutionerBase::normalizeSolution(), PerfGraphOutput::output(), Tecplot::output(), Exodus::output(), Nemesis::output(), ControlOutput::outputActiveObjects(), ControlOutput::outputChangedControls(), ControlOutput::outputControls(), Exodus::outputEmptyTimestep(), Console::outputInput(), Exodus::outputInput(), Exodus::outputNodalVariables(), OversampleOutput::outputStep(), Output::outputStep(), FEProblemBase::outputStep(), Console::outputSystemInformation(), MultiApp::parentOutputPositionChanged(), PerformanceData::PerformanceData(), PetscOutput::petscLinearOutput(), PetscOutput::petscNonlinearOutput(), FEProblemBase::projectSolution(), FEProblemBase::setRestartFile(), TransientMultiApp::setupApp(), TimeSequenceStepperBase::setupSequence(), Transient::setupTimeIntegrator(), TransientMultiApp::solveStep(), FEProblemBase::subdomainSetup(), FEProblemBase::theWarehouse(), TimeExtremeValue::TimeExtremeValue(), TimePeriod::TimePeriod(), FEProblemBase::timestepSetup(), Transient::Transient(), and Console::write().

_apply_timer

PerfID PhysicsBasedPreconditioner::_apply_timer

protected

Definition at line 100 of file PhysicsBasedPreconditioner.h.

Referenced by apply().

_console

const ConsoleStream ConsoleStreamInterface::_console

inherited

An instance of helper class to write streams to the Console objects.

Definition at line 32 of file ConsoleStreamInterface.h.

Referenced by IterationAdaptiveDT::acceptStep(), SetupRecoverFileBaseAction::act(), Adaptivity::adaptMesh(), FEProblemBase::adaptMesh(), SimplePredictor::apply(), FEProblemBase::backupMultiApps(), FEProblemBase::checkProblemIntegrity(), IterationAdaptiveDT::computeAdaptiveDT(), Transient::computeConstrainedDT(), NonlinearSystemBase::computeDamping(), IterationAdaptiveDT::computeDT(), IterationAdaptiveDT::computeFailedDT(), IterationAdaptiveDT::computeInterpolationDT(), FEProblemBase::computeResidualTags(), IterationAdaptiveDT::constrainStep(), TimeStepper::constrainStep(), AB2PredictorCorrector::converged(), FEProblemBase::execMultiApps(), FEProblemBase::execMultiAppTransfers(), MultiAppPostprocessorTransfer::execute(), MultiAppPostprocessorInterpolationTransfer::execute(), MultiAppVariableValueSamplePostprocessorTransfer::execute(), MultiAppNearestNodeTransfer::execute(), MultiAppPostprocessorToAuxScalarTransfer::execute(), MultiAppScalarToAuxScalarTransfer::execute(), MultiAppVariableValueSampleTransfer::execute(), MultiAppInterpolationTransfer::execute(), MultiAppMeshFunctionTransfer::execute(), MultiAppUserObjectTransfer::execute(), MultiAppProjectionTransfer::execute(), MultiAppVectorPostprocessorTransfer::execute(), MultiAppCopyTransfer::execute(), Steady::execute(), MultiAppDTKUserObjectTransfer::execute(), ActionWarehouse::executeActionsWithAction(), ActionWarehouse::executeAllActions(), FEProblemBase::FEProblemBase(), ElementQualityChecker::finalize(), FEProblemBase::finishMultiAppStep(), MultiApp::globalAppToLocal(), InversePowerMethod::init(), NonlinearEigen::init(), Steady::init(), FEProblemBase::initialAdaptMesh(), FEProblemBase::initialSetup(), EigenExecutionerBase::inversePowerIteration(), Transient::keepGoing(), IterationAdaptiveDT::limitDTByFunction(), IterationAdaptiveDT::limitDTToPostprocessorValue(), EigenExecutionerBase::makeBXConsistent(), Console::meshChanged(), MooseObject::mooseDeprecated(), MooseObject::mooseInfo(), MooseObject::mooseWarning(), PerfGraphOutput::output(), DOFMapOutput::output(), VariableResidualNormsDebugOutput::output(), Console::output(), ControlOutput::outputActiveObjects(), ControlOutput::outputChangedControls(), ControlOutput::outputControls(), Console::outputInput(), Console::outputPostprocessors(), Console::outputScalarVariables(), Console::outputSystemInformation(), FEProblemBase::possiblyRebuildGeomSearchPatches(), EigenExecutionerBase::postExecute(), ActionWarehouse::printActionDependencySets(), EigenExecutionerBase::printEigenvalue(), MaterialPropertyDebugOutput::printMaterialMap(), SolutionTimeAdaptiveDT::rejectStep(), DT2::rejectStep(), FEProblemBase::restoreMultiApps(), SimplePredictor::shouldApply(), NonlinearSystem::solve(), LStableDirk2::solve(), LStableDirk3::solve(), ImplicitMidpoint::solve(), ExplicitTVDRK2::solve(), LStableDirk4::solve(), AStableDirk4::solve(), ExplicitRK2::solve(), TransientMultiApp::solveStep(), Transient::solveStep(), DT2::step(), AB2PredictorCorrector::step(), NonlinearEigen::takeStep(), Console::writeTimestepInformation(), Console::writeVariableNorms(), and FEProblemBase::~FEProblemBase().

_enabled

const bool& MooseObject::_enabled

protectedinherited

Reference to the "enable" InputParaemters, used by Controls for toggling on/off MooseObjects.

Definition at line 180 of file MooseObject.h.

Referenced by MooseObject::enabled().

_fe_problem

FEProblemBase& MoosePreconditioner::_fe_problem

protectedinherited

Subproblem this preconditioner is part of.

Definition at line 55 of file MoosePreconditioner.h.

Referenced by addSystem(), apply(), FieldSplitPreconditioner::FieldSplitPreconditioner(), FiniteDifferencePreconditioner::FiniteDifferencePreconditioner(), MoosePreconditioner::MoosePreconditioner(), PhysicsBasedPreconditioner(), setup(), and SingleMatrixPreconditioner::SingleMatrixPreconditioner().

_init_timer

PerfID PhysicsBasedPreconditioner::_init_timer

protected

Timers.

Definition at line 99 of file PhysicsBasedPreconditioner.h.

Referenced by init().

_name

const std::string& MooseObject::_name

protectedinherited

The name of this object, reference to value stored in InputParameters.

Definition at line 177 of file MooseObject.h.

Referenced by DerivativeParsedMaterialHelper::assembleDerivatives(), Piecewise::buildFromFile(), Piecewise::buildFromXandY(), Piecewise::buildFromXY(), CentroidMultiApp::fillPositions(), MultiApp::fillPositions(), FunctionDT::FunctionDT(), PiecewiseBase::initialSetup(), MooseObject::name(), PiecewiseBilinear::parse(), Piecewise::Piecewise(), PiecewiseBilinear::PiecewiseBilinear(), PiecewiseLinearInterpolationMaterial::PiecewiseLinearInterpolationMaterial(), PiecewiseBase::setData(), Split::setup(), and VectorPostprocessorFunction::VectorPostprocessorFunction().

_nl

NonlinearSystemBase& PhysicsBasedPreconditioner::_nl

protected

The nonlinear system this PBP is associated with (convenience reference)

Definition at line 77 of file PhysicsBasedPreconditioner.h.

Referenced by addSystem(), apply(), PhysicsBasedPreconditioner(), and setup().

_off_diag

std::vector<std::vector<unsigned int> > PhysicsBasedPreconditioner::_off_diag

protected

Holds which off diagonal blocks to compute.

Definition at line 87 of file PhysicsBasedPreconditioner.h.

Referenced by addSystem(), apply(), PhysicsBasedPreconditioner(), and setup().

_off_diag_mats

std::vector<std::vector<SparseMatrix<Number> *> > PhysicsBasedPreconditioner::_off_diag_mats

protected

Holds pointers to the off-diagonal matrices.

This is in the same order as _off_diag.

This is really just for convenience so we don't have to keep looking this thing up through it's name.

Definition at line 96 of file PhysicsBasedPreconditioner.h.

Referenced by addSystem(), apply(), PhysicsBasedPreconditioner(), and setup().

_pars

const InputParameters& MooseObject::_pars

protectedinherited

Parameters of this object, references the InputParameters stored in the InputParametersWarehouse.

Definition at line 168 of file MooseObject.h.

Referenced by GridPartitioner::_do_partition(), BreakMeshByBlockGeneratorBase::BreakMeshByBlockGeneratorBase(), BreakMeshByBlockBase::checkInputParameter(), PetscExternalPartitioner::clone(), GridPartitioner::clone(), Console::Console(), Eigenvalue::Eigenvalue(), PerflogDumper::execute(), Eigenvalue::execute(), Executioner::Executioner(), FunctionMaterialBase::FunctionMaterialBase(), ParsedMaterialHelper::functionParse(), ExtraNodesetGenerator::generate(), MooseObject::getParam(), GeneralUserObject::getPostprocessorValue(), AuxKernel::getPostprocessorValue(), AuxKernel::getScatterVectorPostprocessorValue(), AuxKernel::getUserObject(), InitialConditionBase::getUserObject(), InitialConditionBase::getUserObjectBase(), AuxKernel::getUserObjectBase(), GeneralUserObject::getVectorPostprocessorValue(), AuxKernel::getVectorPostprocessorValue(), Transient::init(), AdvancedOutput::initExecutionTypes(), Console::initialSetup(), MooseObject::isParamValid(), AddExtraNodeset::modify(), MooseObject::paramError(), MooseObject::parameters(), MooseObject::paramInfo(), MooseObject::paramWarning(), and Transient::setupTimeIntegrator().

_perf_graph

PerfGraph& PerfGraphInterface::_perf_graph

protectedinherited

The performance graph to add to.

Definition at line 66 of file PerfGraphInterface.h.

Referenced by PerfGraphData::getValue(), and PerfGraphInterface::registerTimedSection().

_pg_params

const InputParameters* PerfGraphInterface::_pg_params

protectedinherited

Params.

Definition at line 63 of file PerfGraphInterface.h.

_pre_type

std::vector<PreconditionerType> PhysicsBasedPreconditioner::_pre_type

protected

Which preconditioner to use for each solve.

Definition at line 85 of file PhysicsBasedPreconditioner.h.

Referenced by addSystem(), init(), and PhysicsBasedPreconditioner().

_preconditioners

std::vector<std::unique_ptr<Preconditioner<Number> > > PhysicsBasedPreconditioner::_preconditioners

protected

Holds one Preconditioner object per small system to solve.

Definition at line 81 of file PhysicsBasedPreconditioner.h.

Referenced by apply(), init(), and PhysicsBasedPreconditioner().

_prefix

std::string PerfGraphInterface::_prefix

protectedinherited

A prefix to use for all sections.

Definition at line 69 of file PerfGraphInterface.h.

Referenced by PerfGraphInterface::registerTimedSection().

_solve_order

std::vector<unsigned int> PhysicsBasedPreconditioner::_solve_order

protected

Holds the order the blocks are solved for.

Definition at line 83 of file PhysicsBasedPreconditioner.h.

Referenced by apply(), init(), and PhysicsBasedPreconditioner().

_systems

std::vector<LinearImplicitSystem *> PhysicsBasedPreconditioner::_systems

protected

List of linear system that build up the preconditioner.

Definition at line 79 of file PhysicsBasedPreconditioner.h.

Referenced by addSystem(), apply(), init(), PhysicsBasedPreconditioner(), and setup().

_type

const std::string& MooseObject::_type

protectedinherited

The type of this object (the Class name)

Definition at line 174 of file MooseObject.h.

Referenced by FEProblemBase::init(), and MooseObject::type().

---

The documentation for this class was generated from the following files:

• include/preconditioners/PhysicsBasedPreconditioner.h
• src/preconditioners/PhysicsBasedPreconditioner.C