#include <MeshDiagnosticsGenerator.h>

Inheritance diagram for MeshDiagnosticsGenerator:

Public Types
using	DataFileParameterType = DataFileName
	The parameter type this interface expects for a data file name. More...

Public Member Functions
	MeshDiagnosticsGenerator (const InputParameters &parameters)

std::unique_ptr< MeshBase >	generate () override
	Generate / modify the mesh. More...

bool	hasGenerateData () const

std::unique_ptr< MeshBase >	generateInternal ()
	Internal generation method - this is what is actually called within MooseApp to execute the MeshGenerator. More...

const std::set< MeshGeneratorName > &	getRequestedMeshGenerators () const

const std::set< MeshGeneratorName > &	getRequestedMeshGeneratorsForSub () const

void	addParentMeshGenerator (const MeshGenerator &mg, const AddParentChildKey)
	Adds the MeshGenerator `mg` as a parent. More...

void	addChildMeshGenerator (const MeshGenerator &mg, const AddParentChildKey)
	Adds the MeshGenerator `mg` as a child. More...

const std::set< const MeshGenerator *, Comparator > &	getParentMeshGenerators () const
	Gets the MeshGenerators that are parents to this MeshGenerator. More...

const std::set< const MeshGenerator *, Comparator > &	getChildMeshGenerators () const
	Gets the MeshGenerators that are children to this MeshGenerator. More...

const std::set< const MeshGenerator *, Comparator > &	getSubMeshGenerators () const
	Gets the MeshGenerators that are children to this MeshGenerator. More...

bool	isParentMeshGenerator (const MeshGeneratorName &name, const bool direct=true) const

bool	isChildMeshGenerator (const MeshGeneratorName &name, const bool direct=true) const

bool	isNullMeshName (const MeshGeneratorName &name) const

bool	hasSaveMesh () const
	Return whether or not to save the current mesh. More...

bool	hasOutput () const

const std::string &	getSavedMeshName () const
	Return the name of the saved mesh. More...

bool	isDataOnly () const

virtual bool	enabled () const
	Return the enabled status of the object. More...

std::shared_ptr< MooseObject >	getSharedPtr ()
	Get another shared pointer to this object that has the same ownership group. More...

std::shared_ptr< const MooseObject >	getSharedPtr () const

MooseApp &	getMooseApp () const
	Get the MooseApp this class is associated with. More...

const std::string &	type () const
	Get the type of this class. More...

virtual const std::string &	name () const
	Get the name of the class. More...

std::string	typeAndName () const
	Get the class's combined type and name; useful in error handling. More...

std::string	errorPrefix (const std::string &error_type) const

void	callMooseError (std::string msg, const bool with_prefix) const
	Calls moose error with the message `msg`. More...

MooseObjectParameterName	uniqueParameterName (const std::string &parameter_name) const
	The unique parameter name of a valid parameter of this object for accessing parameter controls. More...

const InputParameters &	parameters () const
	Get the parameters of the object. More...

MooseObjectName	uniqueName () const
	The unique name for accessing input parameters of this object in the InputParameterWarehouse. More...

template<typename T >
const T &	getParam (const std::string &name) const
	Retrieve a parameter for the object. More...

template<typename T1 , typename T2 >
std::vector< std::pair< T1, T2 > >	getParam (const std::string &param1, const std::string &param2) const
	Retrieve two parameters and provide pair of parameters for the object. More...

template<typename T >
const T *	queryParam (const std::string &name) const
	Query a parameter for the object. More...

template<typename T >
const T &	getRenamedParam (const std::string &old_name, const std::string &new_name) const
	Retrieve a renamed parameter for the object. More...

template<typename T >
T	getCheckedPointerParam (const std::string &name, const std::string &error_string="") const
	Verifies that the requested parameter exists and is not NULL and returns it to the caller. More...

bool	isParamValid (const std::string &name) const
	Test if the supplied parameter is valid. More...

bool	isParamSetByUser (const std::string &nm) const
	Test if the supplied parameter is set by a user, as opposed to not set or set to default. More...

template<typename... Args>
void	paramError (const std::string &param, Args... args) const
	Emits an error prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message. More...

template<typename... Args>
void	paramWarning (const std::string &param, Args... args) const
	Emits a warning prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message. More...

template<typename... Args>
void	paramInfo (const std::string &param, Args... args) const
	Emits an informational message prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message. More...

void	connectControllableParams (const std::string &parameter, const std::string &object_type, const std::string &object_name, const std::string &object_parameter) const
	Connect controllable parameter of this action with the controllable parameters of the objects added by this action. More...

template<typename... Args>
void	mooseError (Args &&... args) const
	Emits an error prefixed with object name and type. More...

template<typename... Args>
void	mooseErrorNonPrefixed (Args &&... args) const
	Emits an error without the prefixing included in mooseError(). More...

template<typename... Args>
void	mooseDocumentedError (const std::string &repo_name, const unsigned int issue_num, Args &&... args) const
	Emits a documented error with object name and type. More...

template<typename... Args>
void	mooseWarning (Args &&... args) const
	Emits a warning prefixed with object name and type. More...

template<typename... Args>
void	mooseWarningNonPrefixed (Args &&... args) const
	Emits a warning without the prefixing included in mooseWarning(). More...

template<typename... Args>
void	mooseDeprecated (Args &&... args) const

template<typename... Args>
void	mooseInfo (Args &&... args) const

const Parallel::Communicator &	comm () const

processor_id_type	n_processors () const

processor_id_type	processor_id () const

std::string	getDataFileName (const std::string &param) const
	Deprecated method. More...

std::string	getDataFileNameByName (const std::string &relative_path) const
	Deprecated method. More...

std::string	getDataFilePath (const std::string &relative_path) const
	Returns the path of a data file for a given relative file path. More...

Static Public Member Functions
static InputParameters	validParams ()

static void	setHasGenerateData (InputParameters &params)
	Sets that a mesh generator has a generateData() implementation. More...

static bool	hasGenerateData (const InputParameters &params)

Public Attributes
const ConsoleStream	_console
	An instance of helper class to write streams to the Console objects. More...

Static Public Attributes
static const std::string	data_only_param = "_data_only"
	The name of the private parameter for setting data only. More...

static constexpr auto	SYSTEM = "MeshMetaData"
	The system name used when initializing the Restartable interface. More...

static constexpr auto	NAME = "<empty>"
	The data name used when initializing the Restartable interface for non-MeshGenerator objects. More...

Protected Member Functions
virtual void	generateData ()
	Generate the mesh data. More...

template<typename T >
T &	copyMeshProperty (const std::string &target_data_name, const std::string &source_data_name, const std::string &source_mesh)
	Method for copying attribute from input mesh meta-data store to current mesh meta-data store. More...

template<typename T >
T &	copyMeshProperty (const std::string &source_data_name, const std::string &source_mesh)
	Method for copying attribute from input mesh meta-data store to current mesh meta-data store, keeping source and target data names the same. More...

std::unique_ptr< MeshBase > &	getMesh (const std::string &param_name, const bool allow_invalid=false)
	Takes the name of a MeshGeneratorName parameter and then gets a pointer to the Mesh that MeshGenerator is going to create. More...

std::vector< std::unique_ptr< MeshBase > * >	getMeshes (const std::string &param_name)
	Like getMesh(), but for multiple generators. More...

std::unique_ptr< MeshBase > &	getMeshByName (const MeshGeneratorName &mesh_generator_name)
	Like `getMesh()`, but takes the name of another MeshGenerator directly. More...

std::vector< std::unique_ptr< MeshBase > * >	getMeshesByName (const std::vector< MeshGeneratorName > &mesh_generator_names)
	Like getMeshByName(), but for multiple generators. More...

void	declareMeshForSub (const std::string &param_name)
	Declares that a MeshGenerator referenced in the InputParameters is to be used as a dependency of a sub MeshGenerator created by this MeshGenerator (see addSubMeshGenerator) More...

void	declareMeshesForSub (const std::string &param_name)
	Like declareMeshForSub(), but for multiple generators. More...

void	declareMeshForSubByName (const MeshGeneratorName &mesh_generator_name)
	Like declareMeshForSub(), but takes the name of another MeshGenerator directly. More...

void	declareMeshesForSubByName (const std::vector< MeshGeneratorName > &mesh_generator_names)
	Like declareMeshForSubByName(), but for multiple generators. More...

std::unique_ptr< MeshBase >	buildMeshBaseObject (unsigned int dim=libMesh::invalid_uint)
	Build a `MeshBase` object whose underlying type will be determined by the Mesh input file block. More...

std::unique_ptr< ReplicatedMesh >	buildReplicatedMesh (unsigned int dim=libMesh::invalid_uint)
	Build a replicated mesh. More...

std::unique_ptr< DistributedMesh >	buildDistributedMesh (unsigned int dim=libMesh::invalid_uint)
	Build a distributed mesh that has correct remote element removal behavior and geometric ghosting functors based on the simulation objects. More...

template<typename... Ts>
void	addMeshSubgenerator (const std::string &type, const std::string &name, Ts... extra_input_parameters)
	Construct a "subgenerator", a different MeshGenerator subclass that will be added to the same MooseApp on the fly. More...

void	addMeshSubgenerator (const std::string &type, const std::string &name, InputParameters params)
	Construct a "subgenerator", as above. More...

void	declareNullMeshName (const MeshGeneratorName &name)
	Registers the name `name` as a "null" mesh, which is a MeshGenerator used in InputParameters that will not represent an input mesh when requested via getMesh. More...

template<typename T >
const T &	getMeshProperty (const std::string &data_name, const std::string &prefix)
	Method for retrieving a property with the given type and name exists in the mesh meta-data store. More...

template<typename T >
const T &	getMeshProperty (const std::string &data_name)

bool	hasMeshProperty (const std::string &data_name, const std::string &prefix) const

template<typename T >
bool	hasMeshProperty (const std::string &data_name, const std::string &prefix) const

bool	hasMeshProperty (const std::string &data_name) const

template<typename T >
bool	hasMeshProperty (const std::string &data_name) const

std::string	meshPropertyName (const std::string &data_name) const


template<typename T , typename... Args>
T &	declareMeshProperty (const std::string &data_name, Args &&... args)
	Methods for writing out attributes to the mesh meta-data store, which can be retrieved from most other MOOSE systems and is recoverable. More...

template<typename T >
T &	declareMeshProperty (const std::string &data_name, const T &data_value)


template<typename T , typename... Args>
T &	setMeshProperty (const std::string &data_name, Args &&... args)
	Method for updating attributes to the mesh meta-data store, which can only be invoked in the MeshGenerator generate routine only if the mesh generator property has already been declared. More...

template<typename T >
T &	setMeshProperty (const std::string &data_name, const T &data_value)

Static Protected Member Functions
static std::string	meshPropertyName (const std::string &data_name, const std::string &prefix)

Protected Attributes
std::unique_ptr< MeshBase > &	_input
	the input mesh to be diagnosed More...

MooseMesh *const	_mesh
	Pointer to the owning mesh. More...

const bool &	_enabled
	Reference to the "enable" InputParameters, used by Controls for toggling on/off MooseObjects. More...

MooseApp &	_app
	The MOOSE application this is associated with. More...

const std::string	_type
	The type of this class. More...

const std::string	_name
	The name of this class. More...

const InputParameters &	_pars
	Parameters of this object, references the InputParameters stored in the InputParametersWarehouse. More...

Factory &	_factory
	The Factory associated with the MooseApp. More...

ActionFactory &	_action_factory
	Builds Actions. More...

const Parallel::Communicator &	_communicator

Private Member Functions
void	checkSidesetsOrientation (const std::unique_ptr< MeshBase > &mesh) const
	Routine to check sideset orientation near subdomains. More...

void	checkWatertightSidesets (const std::unique_ptr< MeshBase > &mesh) const

void	checkWatertightNodesets (const std::unique_ptr< MeshBase > &mesh) const

std::vector< boundary_id_type >	findBoundaryOverlap (const std::vector< boundary_id_type > &watertight_boundaries, std::vector< boundary_id_type > &boundary_ids) const
	Helper function that finds the intersection between the given vectors. More...

void	checkElementVolumes (const std::unique_ptr< MeshBase > &mesh) const
	Routine to check the element volumes. More...

void	checkElementTypes (const std::unique_ptr< MeshBase > &mesh) const
	Routine to check the element types in each subdomain. More...

void	checkElementOverlap (const std::unique_ptr< MeshBase > &mesh) const
	Routine to check whether elements overlap in the mesh. More...

void	checkNonPlanarSides (const std::unique_ptr< MeshBase > &mesh) const
	Routine to check whether there are non-planar sides in the mesh. More...

void	checkNonConformalMesh (const std::unique_ptr< MeshBase > &mesh) const
	Routine to check whether a mesh presents non-conformality. More...

void	checkNonConformalMeshFromAdaptivity (const std::unique_ptr< MeshBase > &mesh) const
	Routine to check whether a mesh presents non-conformality born from adaptivity. More...

void	checkLocalJacobians (const std::unique_ptr< MeshBase > &mesh) const
	Routine to check whether the Jacobians (elem and side) are not negative. More...

void	checkNonMatchingEdges (const std::unique_ptr< MeshBase > &mesh) const

void	diagnosticsLog (std::string msg, const MooseEnum &log_level, bool problem_detected) const
	Utility routine to output the final diagnostics level in the desired mode. More...

Private Attributes
const MooseEnum	_check_sidesets_orientation
	whether to check that sidesets are consistently oriented using neighbor subdomains More...

const MooseEnum	_check_watertight_sidesets
	whether to check that each external side is assigned to a sideset More...

const MooseEnum	_check_watertight_nodesets
	whether to check that each external node is assigned to a nodeset More...

std::vector< BoundaryName >	_watertight_boundary_names
	Names of boundaries to be checked in watertight checks. More...

std::vector< BoundaryID >	_watertight_boundaries
	IDs of boundaries to be checked in watertight checks. More...

const MooseEnum	_check_element_volumes
	whether to check element volumes More...

const Real	_min_volume
	minimum size for element volume to be counted as a tiny element More...

const Real	_max_volume
	maximum size for element volume to be counted as a big element More...

const MooseEnum	_check_element_types
	whether to check different element types in the same sub-domain More...

const MooseEnum	_check_element_overlap
	whether to check for intersecting elements More...

const MooseEnum	_check_non_planar_sides
	whether to check for elements in different planes (non_planar) More...

const MooseEnum	_check_non_conformal_mesh
	whether to check for non-conformal meshes More...

const Real	_non_conformality_tol
	tolerance for detecting when meshes are not conformal More...

const MooseEnum	_check_non_matching_edges

const Real	_non_matching_edge_tol

const MooseEnum	_check_adaptivity_non_conformality
	whether to check for the adaptivity of non-conformal meshes More...

const MooseEnum	_check_local_jacobian
	whether to check for negative jacobians in the domain More...

const unsigned int	_num_outputs
	number of logs to output at most for each check More...

Detailed Description

Definition at line 18 of file MeshDiagnosticsGenerator.h.

Member Typedef Documentation

◆ DataFileParameterType

using DataFileInterface::DataFileParameterType = DataFileName

inherited

The parameter type this interface expects for a data file name.

Definition at line 27 of file DataFileInterface.h.

Constructor & Destructor Documentation

◆ MeshDiagnosticsGenerator()

MeshDiagnosticsGenerator::MeshDiagnosticsGenerator ( const InputParameters & parameters )

Definition at line 94 of file MeshDiagnosticsGenerator.C.

   : MeshGenerator(parameters),
     _input(getMesh("input")),
     _check_sidesets_orientation(getParam<MooseEnum>("examine_sidesets_orientation")),
     _check_watertight_sidesets(getParam<MooseEnum>("check_for_watertight_sidesets")),
     _check_watertight_nodesets(getParam<MooseEnum>("check_for_watertight_nodesets")),
     _watertight_boundary_names(getParam<std::vector<BoundaryName>>("boundaries_to_check")),
     _check_element_volumes(getParam<MooseEnum>("examine_element_volumes")),
     _min_volume(getParam<Real>("minimum_element_volumes")),
     _max_volume(getParam<Real>("maximum_element_volumes")),
     _check_element_types(getParam<MooseEnum>("examine_element_types")),
     _check_element_overlap(getParam<MooseEnum>("examine_element_overlap")),
     _check_non_planar_sides(getParam<MooseEnum>("examine_nonplanar_sides")),
     _check_non_conformal_mesh(getParam<MooseEnum>("examine_non_conformality")),
     _non_conformality_tol(getParam<Real>("nonconformal_tol")),
     _check_non_matching_edges(getParam<MooseEnum>("examine_non_matching_edges")),
     _non_matching_edge_tol(getParam<Real>("intersection_tol")),
     _check_adaptivity_non_conformality(
         getParam<MooseEnum>("search_for_adaptivity_nonconformality")),
     _check_local_jacobian(getParam<MooseEnum>("check_local_jacobian")),
     _num_outputs(getParam<unsigned int>("log_length_limit"))
 {
   // Check that no secondary parameters have been passed with the main check disabled
   if ((isParamSetByUser("minimum_element_volumes") ||
        isParamSetByUser("maximum_element_volumes")) &&
       _check_element_volumes == "NO_CHECK")
     paramError("examine_element_volumes",
                "You must set this parameter to true to trigger element size checks");
   if (isParamSetByUser("nonconformal_tol") && _check_non_conformal_mesh == "NO_CHECK")
     paramError("examine_non_conformality",
                "You must set this parameter to true to trigger mesh conformality check");
   if (_check_sidesets_orientation == "NO_CHECK" && _check_watertight_sidesets == "NO_CHECK" &&
       _check_watertight_nodesets == "NO_CHECK" && _check_element_volumes == "NO_CHECK" &&
       _check_element_types == "NO_CHECK" && _check_element_overlap == "NO_CHECK" &&
       _check_non_planar_sides == "NO_CHECK" && _check_non_conformal_mesh == "NO_CHECK" &&
       _check_adaptivity_non_conformality == "NO_CHECK" && _check_local_jacobian == "NO_CHECK" &&
       _check_non_matching_edges == "NO_CHECK")
     mooseError("You need to turn on at least one diagnostic. Did you misspell a parameter?");
 }

Member Function Documentation

◆ addChildMeshGenerator()

void MeshGenerator::addChildMeshGenerator	(	const MeshGenerator &	mg,
		const AddParentChildKey
	)

inherited

Adds the MeshGenerator mg as a child.

Protected by the AddParentChildKey so that parents can only be added by the MooseApp.

Definition at line 365 of file MeshGenerator.C.

 {
   mooseAssert(_app.constructingMeshGenerators(), "Should only be called at construction");
   _child_mesh_generators.insert(&mg);
 }

◆ addMeshSubgenerator() [1/2]

template<typename... Ts>

void MeshGenerator::addMeshSubgenerator	(	const std::string &	type,
		const std::string &	name,
		Ts...	extra_input_parameters
	)

protectedinherited

Construct a "subgenerator", a different MeshGenerator subclass that will be added to the same MooseApp on the fly.

Parameters

type	The type of MeshGenerator
name	The name of the MeshGenerator
extra_input_parameters	... Additional InputParameters to pass

Sub generators must be added in the order that they are executed.

Any input dependencies for a sub generator that come from inputs for this generator must first be declared with the declareMesh(es)ForSub() method.

You can use the output of a sub generator as a mesh in this generator by calling getMesh() with the sub generator's name after adding said sub generator.

Definition at line 513 of file MeshGenerator.h.

Referenced by OverlayMeshGenerator::OverlayMeshGenerator(), and SideSetExtruderGenerator::SideSetExtruderGenerator().

 {
   InputParameters subgenerator_params = _app.getFactory().getValidParams(type);
 
   subgenerator_params.setParameters(extra_input_parameters...);
 
   addMeshSubgenerator(type, name, subgenerator_params);
 }

◆ addMeshSubgenerator() [2/2]

void MeshGenerator::addMeshSubgenerator	(	const std::string &	type,
		const std::string &	name,
		InputParameters	params
	)

protectedinherited

Construct a "subgenerator", as above.

User code is responsible for constructing valid InputParameters.

Parameters

type	The type of MeshGenerator
name	The name of the MeshGenerator
params	The parameters to use to construct the MeshGenerator

Definition at line 334 of file MeshGenerator.C.

 {
   if (!_app.constructingMeshGenerators())
     mooseError("Can only call addMeshSubgenerator() during MeshGenerator construction");
 
   // In case the user forgot it
   params.set<MooseApp *>("_moose_app") = &_app;
 
   // Set this to be data-only if this generator is data only
   params.set<bool>(data_only_param) = isDataOnly();
 
   _app.addMeshGenerator(type, name, params);
   _sub_mesh_generators.insert(&std::as_const(_app).getMeshGenerator(name));
 }

◆ addParentMeshGenerator()

void MeshGenerator::addParentMeshGenerator	(	const MeshGenerator &	mg,
		const AddParentChildKey
	)

inherited

Adds the MeshGenerator mg as a parent.

Protected by the AddParentChildKey so that parents can only be added by the MooseApp.

Definition at line 358 of file MeshGenerator.C.

 {
   mooseAssert(_app.constructingMeshGenerators(), "Should only be called at construction");
   _parent_mesh_generators.insert(&mg);
 }

◆ buildDistributedMesh()

std::unique_ptr< DistributedMesh > MeshGenerator::buildDistributedMesh ( unsigned int dim = libMesh::invalid_uint )

protectedinherited

Build a distributed mesh that has correct remote element removal behavior and geometric ghosting functors based on the simulation objects.

Parameters

dim	The logical dimension of the mesh, e.g. 3 for hexes/tets, 2 for quads/tris. If the caller doesn't specify a value for `dim`, then the value in the `Mesh` input file block will be used

Definition at line 253 of file MeshGenerator.C.

Referenced by DistributedRectilinearMeshGenerator::generate().

 {
   mooseAssert(_mesh, "Need a MooseMesh object");
   return _mesh->buildTypedMesh<DistributedMesh>(dim);
 }

◆ buildMeshBaseObject()

std::unique_ptr< MeshBase > MeshGenerator::buildMeshBaseObject ( unsigned int dim = libMesh::invalid_uint )

protectedinherited

Build a MeshBase object whose underlying type will be determined by the Mesh input file block.

Parameters

dim	The logical dimension of the mesh, e.g. 3 for hexes/tets, 2 for quads/tris. If the caller doesn't specify a value for `dim`, then the value in the `Mesh` input file block will be used

Definition at line 239 of file MeshGenerator.C.

Referenced by BlockToMeshConverterGenerator::generate(), ElementGenerator::generate(), FileMeshGenerator::generate(), SphereMeshGenerator::generate(), PolyLineMeshGenerator::generate(), ExamplePatchMeshGenerator::generate(), AnnularMeshGenerator::generate(), CartesianMeshGenerator::generate(), GeneratedMeshGenerator::generate(), AdvancedExtruderGenerator::generate(), MeshExtruderGenerator::generate(), and TransfiniteMeshGenerator::generate().

 {
   mooseAssert(_mesh, "Need a MooseMesh object");
   return _mesh->buildMeshBaseObject(dim);
 }

◆ buildReplicatedMesh()

std::unique_ptr< ReplicatedMesh > MeshGenerator::buildReplicatedMesh ( unsigned int dim = libMesh::invalid_uint )

protectedinherited

Build a replicated mesh.

Parameters

dim	The logical dimension of the mesh, e.g. 3 for hexes/tets, 2 for quads/tris. If the caller doesn't specify a value for `dim`, then the value in the `Mesh` input file block will be used

Definition at line 246 of file MeshGenerator.C.

Referenced by FillBetweenCurvesGenerator::generate(), FillBetweenSidesetsGenerator::generate(), FillBetweenPointVectorsGenerator::generate(), ConcentricCircleMeshGenerator::generate(), ImageMeshGenerator::generate(), ParsedCurveGenerator::generate(), RinglebMeshGenerator::generate(), and SpiralAnnularMeshGenerator::generate().

 {
   mooseAssert(_mesh, "Need a MooseMesh object");
   return _mesh->buildTypedMesh<ReplicatedMesh>(dim);
 }

◆ callMooseError()

void MooseBase::callMooseError	(	std::string	msg,
		const bool	with_prefix
	)		const

inherited

Calls moose error with the message msg.

Will prefix the message with the subapp name if one exists.

If with_prefix, then add the prefix from errorPrefix() to the error.

Definition at line 33 of file MooseBase.C.

Referenced by InputParameters::callMooseErrorHelper(), MooseBaseErrorInterface::mooseDocumentedError(), MooseBaseErrorInterface::mooseError(), MooseBaseErrorInterface::mooseErrorNonPrefixed(), and MooseBaseParameterInterface::paramError().

 {
   _app.getOutputWarehouse().mooseConsole();
   const std::string prefix = _app.isUltimateMaster() ? "" : _app.name();
   if (with_prefix)
     msg = errorPrefix("error") + msg;
   moose::internal::mooseErrorRaw(msg, prefix);
 }

◆ checkElementOverlap()

void MeshDiagnosticsGenerator::checkElementOverlap ( const std::unique_ptr< MeshBase > & mesh ) const

private

Routine to check whether elements overlap in the mesh.

Definition at line 532 of file MeshDiagnosticsGenerator.C.

Referenced by generate().

 {
   {
     unsigned int num_elem_overlaps = 0;
     auto pl = mesh->sub_point_locator();
     // loop on nodes, assumed replicated mesh
     for (auto & node : mesh->node_ptr_range())
     {
       // find all the elements around this node
       std::set<const Elem *> elements;
       (*pl)(*node, elements);
 
       for (auto & elem : elements)
       {
         if (!elem->contains_point(*node))
           continue;
 
         // not overlapping inside the element if part of its nodes
         bool found = false;
         for (auto & elem_node : elem->node_ref_range())
           if (*node == elem_node)
           {
             found = true;
             break;
           }
         // not overlapping inside the element if right on its side
         bool on_a_side = false;
         for (const auto & elem_side_index : elem->side_index_range())
           if (elem->side_ptr(elem_side_index)->contains_point(*node, _non_conformality_tol))
             on_a_side = true;
         if (!found && !on_a_side)
         {
           num_elem_overlaps++;
           if (num_elem_overlaps < _num_outputs)
             _console << "Element overlap detected at : " << *node << std::endl;
           else if (num_elem_overlaps == _num_outputs)
             _console << "Maximum output reached, log is silenced" << std::endl;
         }
       }
     }
 
     diagnosticsLog("Number of elements overlapping (node-based heuristics): " +
                        Moose::stringify(num_elem_overlaps),
                    _check_element_overlap,
                    num_elem_overlaps);
     num_elem_overlaps = 0;
 
     // loop on all elements in mesh: assumes a replicated mesh
     for (auto & elem : mesh->active_element_ptr_range())
     {
       // find all the elements around the centroid of this element
       std::set<const Elem *> overlaps;
       (*pl)(elem->vertex_average(), overlaps);
 
       if (overlaps.size() > 1)
       {
         num_elem_overlaps++;
         if (num_elem_overlaps < _num_outputs)
           _console << "Element overlap detected with element : " << elem->id() << " near point "
                    << elem->vertex_average() << std::endl;
         else if (num_elem_overlaps == _num_outputs)
           _console << "Maximum output reached, log is silenced" << std::endl;
       }
     }
     diagnosticsLog("Number of elements overlapping (centroid-based heuristics): " +
                        Moose::stringify(num_elem_overlaps),
                    _check_element_overlap,
                    num_elem_overlaps);
   }
 }

◆ checkElementTypes()

void MeshDiagnosticsGenerator::checkElementTypes ( const std::unique_ptr< MeshBase > & mesh ) const

private

Routine to check the element types in each subdomain.

Definition at line 504 of file MeshDiagnosticsGenerator.C.

Referenced by generate().

 {
   std::set<subdomain_id_type> ids;
   mesh->subdomain_ids(ids);
   // loop on sub-domain
   for (auto & id : ids)
   {
     // ElemType defines an enum for geometric element types
     std::set<ElemType> types;
     // loop on elements within this sub-domain
     for (auto & elem : mesh->active_subdomain_elements_ptr_range(id))
       types.insert(elem->type());
 
     std::string elem_type_names = "";
     for (auto & elem_type : types)
       elem_type_names += " " + Moose::stringify(elem_type);
 
     _console << "Element type in subdomain " + mesh->subdomain_name(id) + " (" +
                     std::to_string(id) + ") :" + elem_type_names
              << std::endl;
     if (types.size() > 1)
       diagnosticsLog("Two different element types in subdomain " + std::to_string(id),
                      _check_element_types,
                      true);
   }
 }

◆ checkElementVolumes()

void MeshDiagnosticsGenerator::checkElementVolumes ( const std::unique_ptr< MeshBase > & mesh ) const

private

Routine to check the element volumes.

Definition at line 463 of file MeshDiagnosticsGenerator.C.

Referenced by generate().

 {
   unsigned int num_tiny_elems = 0;
   unsigned int num_negative_elems = 0;
   unsigned int num_big_elems = 0;
   // loop elements within the mesh (assumes replicated)
   for (auto & elem : mesh->active_element_ptr_range())
   {
     if (elem->volume() <= _min_volume)
     {
       if (num_tiny_elems < _num_outputs)
         _console << "Element with volume below threshold detected : \n"
                  << "id " << elem->id() << " near point " << elem->vertex_average() << std::endl;
       else if (num_tiny_elems == _num_outputs)
         _console << "Maximum output reached, log is silenced" << std::endl;
       num_tiny_elems++;
     }
     if (elem->volume() >= _max_volume)
     {
       if (num_big_elems < _num_outputs)
         _console << "Element with volume above threshold detected : \n"
                  << elem->get_info() << std::endl;
       else if (num_big_elems == _num_outputs)
         _console << "Maximum output reached, log is silenced" << std::endl;
       num_big_elems++;
     }
   }
   diagnosticsLog("Number of elements below prescribed minimum volume : " +
                      std::to_string(num_tiny_elems),
                  _check_element_volumes,
                  num_tiny_elems);
   diagnosticsLog("Number of elements with negative volume : " + std::to_string(num_negative_elems),
                  _check_element_volumes,
                  num_negative_elems);
   diagnosticsLog("Number of elements above prescribed maximum volume : " +
                      std::to_string(num_big_elems),
                  _check_element_volumes,
                  num_big_elems);
 }

◆ checkLocalJacobians()

void MeshDiagnosticsGenerator::checkLocalJacobians ( const std::unique_ptr< MeshBase > & mesh ) const

private

Routine to check whether the Jacobians (elem and side) are not negative.

Definition at line 1324 of file MeshDiagnosticsGenerator.C.

Referenced by generate().

 {
   unsigned int num_negative_elem_qp_jacobians = 0;
   // Get a high-ish order quadrature
   auto qrule_dimension = mesh->mesh_dimension();
   libMesh::QGauss qrule(qrule_dimension, FIFTH);
 
   // Use a constant monomial
   const libMesh::FEType fe_type(CONSTANT, libMesh::MONOMIAL);
 
   // Initialize a basic constant monomial shape function everywhere
   std::unique_ptr<libMesh::FEBase> fe_elem;
   if (mesh->mesh_dimension() == 1)
     fe_elem = std::make_unique<libMesh::FEMonomial<1>>(fe_type);
   if (mesh->mesh_dimension() == 2)
     fe_elem = std::make_unique<libMesh::FEMonomial<2>>(fe_type);
   else
     fe_elem = std::make_unique<libMesh::FEMonomial<3>>(fe_type);
 
   fe_elem->get_JxW();
   fe_elem->attach_quadrature_rule(&qrule);
 
   // Check elements (assumes serialized mesh)
   for (const auto & elem : mesh->element_ptr_range())
   {
     // Handle mixed-dimensional meshes
     if (qrule_dimension != elem->dim())
     {
       // Re-initialize a quadrature
       qrule_dimension = elem->dim();
       qrule = libMesh::QGauss(qrule_dimension, FIFTH);
 
       // Re-initialize a monomial FE
       if (elem->dim() == 1)
         fe_elem = std::make_unique<libMesh::FEMonomial<1>>(fe_type);
       if (elem->dim() == 2)
         fe_elem = std::make_unique<libMesh::FEMonomial<2>>(fe_type);
       else
         fe_elem = std::make_unique<libMesh::FEMonomial<3>>(fe_type);
 
       fe_elem->get_JxW();
       fe_elem->attach_quadrature_rule(&qrule);
     }
 
     try
     {
       fe_elem->reinit(elem);
     }
     catch (libMesh::LogicError & e)
     {
       num_negative_elem_qp_jacobians++;
       const auto msg = std::string(e.what());
       if (msg.find("negative Jacobian") != std::string::npos)
       {
         if (num_negative_elem_qp_jacobians < _num_outputs)
           _console << "Negative Jacobian found in element " << elem->id() << " near point "
                    << elem->vertex_average() << std::endl;
         else if (num_negative_elem_qp_jacobians == _num_outputs)
           _console << "Maximum log output reached, silencing output" << std::endl;
       }
       else
         _console << e.what() << std::endl;
     }
   }
   diagnosticsLog("Number of elements with a negative Jacobian: " +
                      Moose::stringify(num_negative_elem_qp_jacobians),
                  _check_local_jacobian,
                  num_negative_elem_qp_jacobians);
 
   unsigned int num_negative_side_qp_jacobians = 0;
   // Get a high-ish order side quadrature
   auto qrule_side_dimension = mesh->mesh_dimension() - 1;
   libMesh::QGauss qrule_side(qrule_side_dimension, FIFTH);
 
   // Use the side quadrature now
   fe_elem->attach_quadrature_rule(&qrule_side);
 
   // Check element sides
   for (const auto & elem : mesh->element_ptr_range())
   {
     // Handle mixed-dimensional meshes
     if (int(qrule_side_dimension) != elem->dim() - 1)
     {
       qrule_side_dimension = elem->dim() - 1;
       qrule_side = libMesh::QGauss(qrule_side_dimension, FIFTH);
 
       // Re-initialize a side FE
       if (elem->dim() == 1)
         fe_elem = std::make_unique<libMesh::FEMonomial<1>>(fe_type);
       if (elem->dim() == 2)
         fe_elem = std::make_unique<libMesh::FEMonomial<2>>(fe_type);
       else
         fe_elem = std::make_unique<libMesh::FEMonomial<3>>(fe_type);
 
       fe_elem->get_JxW();
       fe_elem->attach_quadrature_rule(&qrule_side);
     }
 
     for (const auto & side : elem->side_index_range())
     {
       try
       {
         fe_elem->reinit(elem, side);
       }
       catch (libMesh::LogicError & e)
       {
         const auto msg = std::string(e.what());
         if (msg.find("negative Jacobian") != std::string::npos)
         {
           num_negative_side_qp_jacobians++;
           if (num_negative_side_qp_jacobians < _num_outputs)
             _console << "Negative Jacobian found in side " << side << " of element" << elem->id()
                      << " near point " << elem->vertex_average() << std::endl;
           else if (num_negative_side_qp_jacobians == _num_outputs)
             _console << "Maximum log output reached, silencing output" << std::endl;
         }
         else
           _console << e.what() << std::endl;
       }
     }
   }
   diagnosticsLog("Number of element sides with negative Jacobians: " +
                      Moose::stringify(num_negative_side_qp_jacobians),
                  _check_local_jacobian,
                  num_negative_side_qp_jacobians);
 }

◆ checkNonConformalMesh()

void MeshDiagnosticsGenerator::checkNonConformalMesh ( const std::unique_ptr< MeshBase > & mesh ) const

private

Routine to check whether a mesh presents non-conformality.

Definition at line 665 of file MeshDiagnosticsGenerator.C.

Referenced by generate().

 {
   unsigned int num_nonconformal_nodes = 0;
   MeshBaseDiagnosticsUtils::checkNonConformalMesh(
       mesh, _console, _num_outputs, _non_conformality_tol, num_nonconformal_nodes);
   diagnosticsLog("Number of non-conformal nodes: " + Moose::stringify(num_nonconformal_nodes),
                  _check_non_conformal_mesh,
                  num_nonconformal_nodes);
 }

◆ checkNonConformalMeshFromAdaptivity()

void MeshDiagnosticsGenerator::checkNonConformalMeshFromAdaptivity ( const std::unique_ptr< MeshBase > & mesh ) const

private

Routine to check whether a mesh presents non-conformality born from adaptivity.

Definition at line 676 of file MeshDiagnosticsGenerator.C.

Referenced by generate().

 {
   unsigned int num_likely_AMR_created_nonconformality = 0;
   auto pl = mesh->sub_point_locator();
   pl->set_close_to_point_tol(_non_conformality_tol);
 
   // We have to make a copy because adding the new parent element to the mesh
   // will modify the mesh for the analysis of the next nodes
   // Make a copy of the mesh, add this element
   auto mesh_copy = mesh->clone();
   libMesh::MeshRefinement mesh_refiner(*mesh_copy);
 
   // loop on nodes, assumes a replicated mesh
   for (auto & node : mesh->node_ptr_range())
   {
     // find all the elements around this node
     std::set<const Elem *> elements_around;
     (*pl)(*node, elements_around);
 
     // Keep track of the refined elements and the coarse element
     std::set<const Elem *> fine_elements;
     std::set<const Elem *> coarse_elements;
 
     // loop through the set of elements near this node
     for (auto elem : elements_around)
     {
       // If the node is not part of this element's nodes, it is a
       // case of non-conformality
       bool node_on_elem = false;
 
       if (elem->get_node_index(node) != libMesh::invalid_uint)
       {
         node_on_elem = true;
         // non-vertex nodes are not cause for the kind of non-conformality we are looking for
         if (!elem->is_vertex(elem->get_node_index(node)))
           continue;
       }
 
       // Keep track of all the elements this node is a part of. They are potentially the
       // 'fine' (refined) elements next to a coarser element
       if (node_on_elem)
         fine_elements.insert(elem);
       // Else, the node is not part of the element considered, so if the element had been part
       // of an AMR-created non-conformality, this element is on the coarse side
       if (!node_on_elem)
         coarse_elements.insert(elem);
     }
 
     // all the elements around contained the node as one of their nodes
     // if the coarse and refined sides are not stitched together, this check can fail,
     // as nodes that are physically near one element are not part of it because of the lack of
     // stitching (overlapping nodes)
     if (fine_elements.size() == elements_around.size())
       continue;
 
     if (fine_elements.empty())
       continue;
 
     // Depending on the type of element, we already know the number of elements we expect
     // to be part of this set of likely refined candidates for a given non-conformal node to
     // examine. We can only decide if it was born out of AMR if it's the center node of the face
     // of a coarse element near refined elements
     const auto elem_type = (*fine_elements.begin())->type();
     if ((elem_type == QUAD4 || elem_type == QUAD8 || elem_type == QUAD9) &&
         fine_elements.size() != 2)
       continue;
     else if ((elem_type == HEX8 || elem_type == HEX20 || elem_type == HEX27) &&
              fine_elements.size() != 4)
       continue;
     else if ((elem_type == TRI3 || elem_type == TRI6 || elem_type == TRI7) &&
              fine_elements.size() != 3)
       continue;
     else if ((elem_type == TET4 || elem_type == TET10 || elem_type == TET14) &&
              (fine_elements.size() % 2 != 0))
       continue;
 
     // only one coarse element in front of refined elements except for tets. Whatever we're
     // looking at is not the interface between coarse and refined elements
     // Tets are split on their edges (rather than the middle of a face) so there could be any
     // number of coarse elements in front of the node non-conformality created by refinement
     if (elem_type != TET4 && elem_type != TET10 && elem_type != TET14 && coarse_elements.size() > 1)
       continue;
 
     // There exists non-conformality, the node should have been a node of all the elements
     // that are close enough to the node, and it is not
 
     // Nodes of the tentative parent element
     std::vector<const Node *> tentative_coarse_nodes;
 
     // For quads and hexes, there is one (quad) or four (hexes) sides that are tied to this node
     // at the non-conformal interface between the refined elements and a coarse element
     if (elem_type == QUAD4 || elem_type == QUAD8 || elem_type == QUAD9 || elem_type == HEX8 ||
         elem_type == HEX20 || elem_type == HEX27)
     {
       const auto elem = *fine_elements.begin();
 
       // Find which sides (of the elements) the node considered is part of
       std::vector<Elem *> node_on_sides;
       unsigned int side_inside_parent = std::numeric_limits<unsigned int>::max();
       for (auto i : make_range(elem->n_sides()))
       {
         const auto side = elem->side_ptr(i);
         std::vector<const Node *> other_nodes_on_side;
         bool node_on_side = false;
         for (const auto & elem_node : side->node_ref_range())
         {
           if (*node == elem_node)
             node_on_side = true;
           else
             other_nodes_on_side.emplace_back(&elem_node);
         }
         // node is on the side, but is it the side that goes away from the coarse element?
         if (node_on_side)
         {
           // if all the other nodes on this side are in one of the other potentially refined
           // elements, it's one of the side(s) (4 sides in a 3D hex for example) inside the
           // parent
           bool all_side_nodes_are_shared = true;
           for (const auto & other_node : other_nodes_on_side)
           {
             bool shared_with_a_fine_elem = false;
             for (const auto & other_elem : fine_elements)
               if (other_elem != elem &&
                   other_elem->get_node_index(other_node) != libMesh::invalid_uint)
                 shared_with_a_fine_elem = true;
 
             if (!shared_with_a_fine_elem)
               all_side_nodes_are_shared = false;
           }
           if (all_side_nodes_are_shared)
           {
             side_inside_parent = i;
             // We stop examining sides, it does not matter which side we pick inside the parent
             break;
           }
         }
       }
       if (side_inside_parent == std::numeric_limits<unsigned int>::max())
         continue;
 
       // Gather the other potential elements in the refined element:
       // they are point neighbors of the node that is shared between all the elements flagged
       // for the non-conformality
       // Find shared node
       const auto interior_side = elem->side_ptr(side_inside_parent);
       const Node * interior_node = nullptr;
       for (const auto & other_node : interior_side->node_ref_range())
       {
         if (other_node == *node)
           continue;
         bool in_all_node_neighbor_elements = true;
         for (auto other_elem : fine_elements)
         {
           if (other_elem->get_node_index(&other_node) == libMesh::invalid_uint)
             in_all_node_neighbor_elements = false;
         }
         if (in_all_node_neighbor_elements)
         {
           interior_node = &other_node;
           break;
         }
       }
       // Did not find interior node. Probably not AMR
       if (!interior_node)
         continue;
 
       // Add point neighbors of interior node to list of potentially refined elements
       std::set<const Elem *> all_elements;
       elem->find_point_neighbors(*interior_node, all_elements);
 
       if (elem_type == QUAD4 || elem_type == QUAD8 || elem_type == QUAD9)
       {
         const auto success = MeshCoarseningUtils::getFineElementsFromInteriorNode(
             *interior_node, *node, *elem, tentative_coarse_nodes, fine_elements);
         if (!success)
           continue;
       }
       // For hexes we first look at the fine-neighbors of the non-conformality
       // then the fine elements neighbors of the center 'node' of the potential parent
       else
       {
         // Get the coarse neighbor side to be able to recognize nodes that should become part of
         // the coarse parent
         const auto & coarse_elem = *coarse_elements.begin();
         unsigned short coarse_side_i = 0;
         for (const auto & coarse_side_index : coarse_elem->side_index_range())
         {
           const auto coarse_side_ptr = coarse_elem->side_ptr(coarse_side_index);
           // The side of interest is the side that contains the non-conformality
           if (!coarse_side_ptr->close_to_point(*node, 10 * _non_conformality_tol))
             continue;
           else
           {
             coarse_side_i = coarse_side_index;
             break;
           }
         }
         const auto coarse_side = coarse_elem->side_ptr(coarse_side_i);
 
         // We did not find the side of the coarse neighbor near the refined elements
         // Try again at another node
         if (!coarse_side)
           continue;
 
         // We cant directly use the coarse neighbor nodes
         // - The user might be passing a disjoint mesh
         // - There could two levels of refinement separating the coarse neighbor and its refined
         // counterparts
         // We use the fine element nodes
         unsigned int i = 0;
         tentative_coarse_nodes.resize(4);
         for (const auto & elem_1 : fine_elements)
           for (const auto & coarse_node : elem_1->node_ref_range())
           {
             bool node_shared = false;
             for (const auto & elem_2 : fine_elements)
             {
               if (elem_2 != elem_1)
                 if (elem_2->get_node_index(&coarse_node) != libMesh::invalid_uint)
                   node_shared = true;
             }
             // A node for the coarse parent will appear in only one fine neighbor (not shared)
             // and will lay on the side of the coarse neighbor
             // We only care about the coarse neighbor vertex nodes
             if (!node_shared && coarse_side->close_to_point(coarse_node, _non_conformality_tol) &&
                 elem_1->is_vertex(elem_1->get_node_index(&coarse_node)))
               tentative_coarse_nodes[i++] = &coarse_node;
             mooseAssert(i <= 5, "We went too far in this index");
           }
 
         // We did not find 4 coarse nodes. Mesh might be disjoint and the coarse element does not
         // contain the fine elements nodes we found
         if (i != 4)
           continue;
 
         // Need to order these nodes to form a valid quad / base of an hex
         // We go around the axis formed by the node and the interior node
         Point axis = *interior_node - *node;
         const auto start_circle = elem->vertex_average();
         MeshCoarseningUtils::reorderNodes(
             tentative_coarse_nodes, *interior_node, start_circle, axis);
         tentative_coarse_nodes.resize(8);
 
         // Use the neighbors of the fine elements that contain these nodes to get the vertex
         // nodes
         for (const auto & elem : fine_elements)
         {
           // Find the index of the coarse node for the starting element
           unsigned int node_index = 0;
           for (const auto & coarse_node : tentative_coarse_nodes)
           {
             if (elem->get_node_index(coarse_node) != libMesh::invalid_uint)
               break;
             node_index++;
           }
 
           // Get the neighbor element that is part of the fine elements to coarsen together
           for (const auto & neighbor : elem->neighbor_ptr_range())
             if (all_elements.count(neighbor) && !fine_elements.count(neighbor))
             {
               // Find the coarse node for the neighbor
               const Node * coarse_elem_node = nullptr;
               for (const auto & fine_node : neighbor->node_ref_range())
               {
                 if (!neighbor->is_vertex(neighbor->get_node_index(&fine_node)))
                   continue;
                 bool node_shared = false;
                 for (const auto & elem_2 : all_elements)
                   if (elem_2 != neighbor &&
                       elem_2->get_node_index(&fine_node) != libMesh::invalid_uint)
                     node_shared = true;
                 if (!node_shared)
                 {
                   coarse_elem_node = &fine_node;
                   break;
                 }
               }
               // Insert the coarse node at the right place
               tentative_coarse_nodes[node_index + 4] = coarse_elem_node;
               mooseAssert(node_index + 4 < tentative_coarse_nodes.size(), "Indexed too far");
               mooseAssert(coarse_elem_node, "Did not find last coarse element node");
             }
         }
       }
 
       // No need to separate fine elements near the non-conformal node and away from it
       fine_elements = all_elements;
     }
     // For TRI elements, we use the fine triangle element at the center of the potential
     // coarse triangle element
     else if (elem_type == TRI3 || elem_type == TRI6 || elem_type == TRI7)
     {
       // Find the center element
       // It's the only element that shares a side with both of the other elements near the node
       // considered
       const Elem * center_elem = nullptr;
       for (const auto refined_elem_1 : fine_elements)
       {
         unsigned int num_neighbors = 0;
         for (const auto refined_elem_2 : fine_elements)
         {
           if (refined_elem_1 == refined_elem_2)
             continue;
           if (refined_elem_1->has_neighbor(refined_elem_2))
             num_neighbors++;
         }
         if (num_neighbors >= 2)
           center_elem = refined_elem_1;
       }
       // Did not find the center fine element, probably not AMR
       if (!center_elem)
         continue;
       // Now get the tentative coarse element nodes
       for (const auto refined_elem : fine_elements)
       {
         if (refined_elem == center_elem)
           continue;
         for (const auto & other_node : refined_elem->node_ref_range())
           if (center_elem->get_node_index(&other_node) == libMesh::invalid_uint &&
               refined_elem->is_vertex(refined_elem->get_node_index(&other_node)))
             tentative_coarse_nodes.push_back(&other_node);
       }
 
       // Get the final tentative new coarse element node, on the other side of the center
       // element from the non-conformality
       unsigned int center_side_opposite_node = std::numeric_limits<unsigned int>::max();
       for (auto side_index : center_elem->side_index_range())
         if (center_elem->side_ptr(side_index)->get_node_index(node) == libMesh::invalid_uint)
           center_side_opposite_node = side_index;
       const auto neighbor_on_other_side_of_opposite_center_side =
           center_elem->neighbor_ptr(center_side_opposite_node);
 
       // Element is on a boundary, cannot form a coarse element
       if (!neighbor_on_other_side_of_opposite_center_side)
         continue;
 
       fine_elements.insert(neighbor_on_other_side_of_opposite_center_side);
       for (const auto & tri_node : neighbor_on_other_side_of_opposite_center_side->node_ref_range())
         if (neighbor_on_other_side_of_opposite_center_side->is_vertex(
                 neighbor_on_other_side_of_opposite_center_side->get_node_index(&tri_node)) &&
             center_elem->side_ptr(center_side_opposite_node)->get_node_index(&tri_node) ==
                 libMesh::invalid_uint)
           tentative_coarse_nodes.push_back(&tri_node);
 
       mooseAssert(center_side_opposite_node != std::numeric_limits<unsigned int>::max(),
                   "Did not find the side opposite the non-conformality");
       mooseAssert(tentative_coarse_nodes.size() == 3,
                   "We are forming a coarsened triangle element");
     }
     // For TET elements, it's very different because the non-conformality does not happen inside
     // of a face, but on an edge of one or more coarse elements
     else if (elem_type == TET4 || elem_type == TET10 || elem_type == TET14)
     {
       // There are 4 tets on the tips of the coarsened tet and 4 tets inside
       // let's identify all of them
       std::set<const Elem *> tips_tets;
       std::set<const Elem *> inside_tets;
 
       // pick a coarse element and work with its fine neighbors
       const Elem * coarse_elem = nullptr;
       std::set<const Elem *> fine_tets;
       for (auto & coarse_one : coarse_elements)
       {
         for (const auto & elem : fine_elements)
           // for two levels of refinement across, this is not working
           // we would need a "has_face_embedded_in_this_other_ones_face" routine
           if (elem->has_neighbor(coarse_one))
             fine_tets.insert(elem);
 
         if (fine_tets.size())
         {
           coarse_elem = coarse_one;
           break;
         }
       }
       // There's no coarse element neighbor to a group of finer tets, not AMR
       if (!coarse_elem)
         continue;
 
       // There is one last point neighbor of the node that is sandwiched between two neighbors
       for (const auto & elem : fine_elements)
       {
         int num_face_neighbors = 0;
         for (const auto & tet : fine_tets)
           if (tet->has_neighbor(elem))
             num_face_neighbors++;
         if (num_face_neighbors == 2)
         {
           fine_tets.insert(elem);
           break;
         }
       }
 
       // There should be two other nodes with non-conformality near this coarse element
       // Find both, as they will be nodes of the rest of the elements to add to the potential
       // fine tet list. They are shared by two of the fine tets we have already found
       std::set<const Node *> other_nodes;
       for (const auto & tet_1 : fine_tets)
       {
         for (const auto & node_1 : tet_1->node_ref_range())
         {
           if (&node_1 == node)
             continue;
           if (!tet_1->is_vertex(tet_1->get_node_index(&node_1)))
             continue;
           for (const auto & tet_2 : fine_tets)
           {
             if (tet_2 == tet_1)
               continue;
             if (tet_2->get_node_index(&node_1) != libMesh::invalid_uint)
               // check that it's near the coarse element as well
               if (coarse_elem->close_to_point(node_1, 10 * _non_conformality_tol))
                 other_nodes.insert(&node_1);
           }
         }
       }
       mooseAssert(other_nodes.size() == 2,
                   "Should find only two extra non-conformal nodes near the coarse element");
 
       // Now we can go towards this tip element next to two non-conformalities
       for (const auto & tet_1 : fine_tets)
       {
         for (const auto & neighbor : tet_1->neighbor_ptr_range())
           if (neighbor->get_node_index(*other_nodes.begin()) != libMesh::invalid_uint &&
               neighbor->is_vertex(neighbor->get_node_index(*other_nodes.begin())) &&
               neighbor->get_node_index(*other_nodes.rbegin()) != libMesh::invalid_uint &&
               neighbor->is_vertex(neighbor->get_node_index(*other_nodes.rbegin())))
             fine_tets.insert(neighbor);
       }
       // Now that the element next to the time is in the fine_tets, we can get the tip
       for (const auto & tet_1 : fine_tets)
       {
         for (const auto & neighbor : tet_1->neighbor_ptr_range())
           if (neighbor->get_node_index(*other_nodes.begin()) != libMesh::invalid_uint &&
               neighbor->is_vertex(neighbor->get_node_index(*other_nodes.begin())) &&
               neighbor->get_node_index(*other_nodes.rbegin()) != libMesh::invalid_uint &&
               neighbor->is_vertex(neighbor->get_node_index(*other_nodes.rbegin())))
             fine_tets.insert(neighbor);
       }
 
       // Get the sandwiched tets between the tets we already found
       for (const auto & tet_1 : fine_tets)
         for (const auto & neighbor : tet_1->neighbor_ptr_range())
           for (const auto & tet_2 : fine_tets)
             if (tet_1 != tet_2 && tet_2->has_neighbor(neighbor) && neighbor != coarse_elem)
               fine_tets.insert(neighbor);
 
       // tips tests are the only ones to have a node that is shared by no other tet in the group
       for (const auto & tet_1 : fine_tets)
       {
         unsigned int unshared_nodes = 0;
         for (const auto & other_node : tet_1->node_ref_range())
         {
           if (!tet_1->is_vertex(tet_1->get_node_index(&other_node)))
             continue;
           bool node_shared = false;
           for (const auto & tet_2 : fine_tets)
             if (tet_2 != tet_1 && tet_2->get_node_index(&other_node) != libMesh::invalid_uint)
               node_shared = true;
           if (!node_shared)
             unshared_nodes++;
         }
         if (unshared_nodes == 1)
           tips_tets.insert(tet_1);
         else if (unshared_nodes == 0)
           inside_tets.insert(tet_1);
         else
           mooseError("Did not expect a tet to have two unshared vertex nodes here");
       }
 
       // Finally grab the last tip of the tentative coarse tet. It shares:
       // - 3 nodes with the other tips, only one with each
       // - 1 face with only one tet of the fine tet group
       // - it has a node that no other fine tet shares (the tip node)
       for (const auto & tet : inside_tets)
       {
         for (const auto & neighbor : tet->neighbor_ptr_range())
         {
           // Check that it shares a face with no other potential fine tet
           bool shared_with_another_tet = false;
           for (const auto & tet_2 : fine_tets)
           {
             if (tet_2 == tet)
               continue;
             if (tet_2->has_neighbor(neighbor))
               shared_with_another_tet = true;
           }
           if (shared_with_another_tet)
             continue;
 
           // Used to count the nodes shared with tip tets. Can only be 1 per tip tet
           std::vector<const Node *> tip_nodes_shared;
           unsigned int unshared_nodes = 0;
           for (const auto & other_node : neighbor->node_ref_range())
           {
             if (!neighbor->is_vertex(neighbor->get_node_index(&other_node)))
               continue;
 
             // Check for being a node-neighbor of the 3 other tip tets
             for (const auto & tip_tet : tips_tets)
             {
               if (neighbor == tip_tet)
                 continue;
 
               // we could break here but we want to check that no other tip shares that node
               if (tip_tet->get_node_index(&other_node) != libMesh::invalid_uint)
                 tip_nodes_shared.push_back(&other_node);
             }
             // Check for having a node shared with no other tet
             bool node_shared = false;
             for (const auto & tet_2 : fine_tets)
               if (tet_2 != neighbor && tet_2->get_node_index(&other_node) != libMesh::invalid_uint)
                 node_shared = true;
             if (!node_shared)
               unshared_nodes++;
           }
           if (tip_nodes_shared.size() == 3 && unshared_nodes == 1)
             tips_tets.insert(neighbor);
         }
       }
 
       // append the missing fine tets (inside the coarse element, away from the node considered)
       // into the fine elements set for the check on "did it refine the tentative coarse tet
       // onto the same fine tets"
       fine_elements.clear();
       for (const auto & elem : tips_tets)
         fine_elements.insert(elem);
       for (const auto & elem : inside_tets)
         fine_elements.insert(elem);
 
       // get the vertex of the coarse element from the tip tets
       for (const auto & tip : tips_tets)
       {
         for (const auto & node : tip->node_ref_range())
         {
           bool outside = true;
 
           const auto id = tip->get_node_index(&node);
           if (!tip->is_vertex(id))
             continue;
           for (const auto & tet : inside_tets)
             if (tet->get_node_index(&node) != libMesh::invalid_uint)
               outside = false;
           if (outside)
           {
             tentative_coarse_nodes.push_back(&node);
             // only one tip node per tip tet
             break;
           }
         }
       }
 
       std::sort(tentative_coarse_nodes.begin(), tentative_coarse_nodes.end());
       tentative_coarse_nodes.erase(
           std::unique(tentative_coarse_nodes.begin(), tentative_coarse_nodes.end()),
           tentative_coarse_nodes.end());
 
       // The group of fine elements ended up having less or more than 4 tips, so it's clearly
       // not forming a coarse tetrahedral
       if (tentative_coarse_nodes.size() != 4)
         continue;
     }
     else
     {
       mooseInfo("Unsupported element type ",
                 elem_type,
                 ". Skipping detection for this node and all future nodes near only this "
                 "element type");
       continue;
     }
 
     // Check the fine element types: if not all the same then it's not uniform AMR
     for (auto elem : fine_elements)
       if (elem->type() != elem_type)
         continue;
 
     // Check the number of coarse element nodes gathered
     for (const auto & check_node : tentative_coarse_nodes)
       if (check_node == nullptr)
         continue;
 
     // Form a parent, of a low order type as we only have the extreme vertex nodes
     std::unique_ptr<Elem> parent = Elem::build(Elem::first_order_equivalent_type(elem_type));
     auto parent_ptr = mesh_copy->add_elem(parent.release());
 
     // Set the nodes to the coarse element
     for (auto i : index_range(tentative_coarse_nodes))
       parent_ptr->set_node(i, mesh_copy->node_ptr(tentative_coarse_nodes[i]->id()));
 
     // Refine this parent
     parent_ptr->set_refinement_flag(Elem::REFINE);
     parent_ptr->refine(mesh_refiner);
     const auto num_children = parent_ptr->n_children();
 
     // Compare with the original set of elements
     // We already know the child share the exterior node. If they share the same vertex
     // average as the group of unrefined elements we will call this good enough for now
     // For tetrahedral elements we cannot rely on the children all matching as the choice in
     // the diagonal selection can be made differently. We'll just say 4 matching children is
     // good enough for the heuristic
     unsigned int num_children_match = 0;
     for (const auto & child : parent_ptr->child_ref_range())
     {
       for (const auto & potential_children : fine_elements)
         if (MooseUtils::absoluteFuzzyEqual(child.vertex_average()(0),
                                            potential_children->vertex_average()(0),
                                            _non_conformality_tol) &&
             MooseUtils::absoluteFuzzyEqual(child.vertex_average()(1),
                                            potential_children->vertex_average()(1),
                                            _non_conformality_tol) &&
             MooseUtils::absoluteFuzzyEqual(child.vertex_average()(2),
                                            potential_children->vertex_average()(2),
                                            _non_conformality_tol))
         {
           num_children_match++;
           break;
         }
     }
 
     if (num_children_match == num_children ||
         ((elem_type == TET4 || elem_type == TET10 || elem_type == TET14) &&
          num_children_match == 4))
     {
       num_likely_AMR_created_nonconformality++;
       if (num_likely_AMR_created_nonconformality < _num_outputs)
       {
         _console << "Detected non-conformality likely created by AMR near" << *node
                  << Moose::stringify(elem_type)
                  << " elements that could be merged into a coarse element:" << std::endl;
         for (const auto & elem : fine_elements)
           _console << elem->id() << " ";
         _console << std::endl;
       }
       else if (num_likely_AMR_created_nonconformality == _num_outputs)
         _console << "Maximum log output reached, silencing output" << std::endl;
     }
   }
 
   diagnosticsLog(
       "Number of non-conformal nodes likely due to mesh refinement detected by heuristic: " +
           Moose::stringify(num_likely_AMR_created_nonconformality),
       _check_adaptivity_non_conformality,
       num_likely_AMR_created_nonconformality);
   pl->unset_close_to_point_tol();
 }

◆ checkNonMatchingEdges()

void MeshDiagnosticsGenerator::checkNonMatchingEdges ( const std::unique_ptr< MeshBase > & mesh ) const

private

Definition at line 1452 of file MeshDiagnosticsGenerator.C.

Referenced by generate().

 {
   /*Algorithm Overview
     1)Prechecks
       a)This algorithm only works for 3D so check for that first
     2)Loop
       a)Loop through every element
       b)For each element get the edges associated with it
       c)For each edge check overlap with any edges of nearby elements
       d)Have check to make sure the same pair of edges are not being tested twice for overlap
     3)Overlap check
       a)Shortest line that connects both lines is perpendicular to both lines
       b)A good overview of the math for finding intersecting lines can be found
     here->paulbourke.net/geometry/pointlineplane/
   */
   if (mesh->mesh_dimension() != 3)
   {
     mooseWarning("The edge intersection algorithm only works with 3D meshes. "
                  "'examine_non_matching_edges' is skipped");
     return;
   }
   if (!mesh->is_serial())
     mooseError("Only serialized/replicated meshes are supported");
   unsigned int num_intersecting_edges = 0;
 
   // Create map of element to bounding box to avoing reinitializing the same bounding box multiple
   // times
   std::unordered_map<Elem *, BoundingBox> bounding_box_map;
   for (const auto elem : mesh->active_element_ptr_range())
   {
     const auto boundingBox = elem->loose_bounding_box();
     bounding_box_map.insert({elem, boundingBox});
   }
 
   std::unique_ptr<PointLocatorBase> point_locator = mesh->sub_point_locator();
   std::set<std::array<dof_id_type, 4>> overlapping_edges_nodes;
   for (const auto elem : mesh->active_element_ptr_range())
   {
     // loop through elem's nodes and find nearby elements with it
     std::set<const Elem *> candidate_elems;
     std::set<const Elem *> nearby_elems;
     for (unsigned int i = 0; i < elem->n_nodes(); i++)
     {
       (*point_locator)(elem->point(i), candidate_elems);
       nearby_elems.insert(candidate_elems.begin(), candidate_elems.end());
     }
     std::vector<std::unique_ptr<const Elem>> elem_edges(elem->n_edges());
     for (auto i : elem->edge_index_range())
       elem_edges[i] = elem->build_edge_ptr(i);
     for (const auto other_elem : nearby_elems)
     {
       // If they're the same element then there's no need to check for overlap
       if (elem->id() >= other_elem->id())
         continue;
 
       std::vector<std::unique_ptr<const Elem>> other_edges(other_elem->n_edges());
       for (auto j : other_elem->edge_index_range())
         other_edges[j] = other_elem->build_edge_ptr(j);
       for (auto & edge : elem_edges)
       {
         for (auto & other_edge : other_edges)
         {
           // Get nodes from edges
           const Node * n1 = edge->get_nodes()[0];
           const Node * n2 = edge->get_nodes()[1];
           const Node * n3 = other_edge->get_nodes()[0];
           const Node * n4 = other_edge->get_nodes()[1];
 
           // Create array<dof_id_type, 4> to check against set
           std::array<dof_id_type, 4> node_id_array = {n1->id(), n2->id(), n3->id(), n4->id()};
           std::sort(node_id_array.begin(), node_id_array.end());
 
           // Check if the edges have already been added to our check_edges list
           if (overlapping_edges_nodes.count(node_id_array))
           {
             continue;
           }
 
           // Check element/edge type
           if (edge->type() != EDGE2)
           {
             std::string element_message = "Edge of type " + Utility::enum_to_string(edge->type()) +
                                           " was found in cell " + std::to_string(elem->id()) +
                                           " which is of type " +
                                           Utility::enum_to_string(elem->type()) + '\n' +
                                           "The edge intersection check only works for EDGE2 "
                                           "elements.\nThis message will not be output again";
             mooseDoOnce(_console << element_message << std::endl);
             continue;
           }
           if (other_edge->type() != EDGE2)
             continue;
 
           // Now compare edge with other_edge
           Point intersection_coords;
           bool overlap = MeshBaseDiagnosticsUtils::checkFirstOrderEdgeOverlap(
               *edge, *other_edge, intersection_coords, _non_matching_edge_tol);
           if (overlap)
           {
             // Add the nodes that make up the 2 edges to the vector overlapping_edges_nodes
             overlapping_edges_nodes.insert(node_id_array);
             num_intersecting_edges += 2;
             if (num_intersecting_edges < _num_outputs)
             {
               // Print error message
               std::string elem_id = std::to_string(elem->id());
               std::string other_elem_id = std::to_string(other_elem->id());
               std::string x_coord = std::to_string(intersection_coords(0));
               std::string y_coord = std::to_string(intersection_coords(1));
               std::string z_coord = std::to_string(intersection_coords(2));
               std::string message = "Intersecting edges found between elements " + elem_id +
                                     " and " + other_elem_id + " near point (" + x_coord + ", " +
                                     y_coord + ", " + z_coord + ")";
               _console << message << std::endl;
             }
           }
         }
       }
     }
   }
   diagnosticsLog("Number of intersecting element edges: " +
                      Moose::stringify(num_intersecting_edges),
                  _check_non_matching_edges,
                  num_intersecting_edges);
 }

◆ checkNonPlanarSides()

void MeshDiagnosticsGenerator::checkNonPlanarSides ( const std::unique_ptr< MeshBase > & mesh ) const

private

Routine to check whether there are non-planar sides in the mesh.

Definition at line 604 of file MeshDiagnosticsGenerator.C.

Referenced by generate().

 {
   unsigned int sides_non_planar = 0;
   // loop on all elements in mesh: assumes a replicated mesh
   for (auto & elem : mesh->active_element_ptr_range())
   {
     for (auto i : make_range(elem->n_sides()))
     {
       auto side = elem->side_ptr(i);
       std::vector<const Point *> nodes;
       for (auto & node : side->node_ref_range())
         nodes.emplace_back(&node);
 
       if (nodes.size() <= 3)
         continue;
       // First vector of the base
       const RealVectorValue v1 = *nodes[0] - *nodes[1];
 
       // Find another node so that we can form a basis. It should just be node 0, 1, 2
       // to form two independent vectors, but degenerate elements can make them aligned
       bool aligned = true;
       unsigned int third_node_index = 2;
       RealVectorValue v2;
       while (aligned && third_node_index < nodes.size())
       {
         v2 = *nodes[0] - *nodes[third_node_index++];
         aligned = MooseUtils::absoluteFuzzyEqual(v1 * v2 - v1.norm() * v2.norm(), 0);
       }
 
       // Degenerate element, could not find a third node that is not aligned
       if (aligned)
         continue;
 
       bool found_non_planar = false;
 
       for (auto node_offset : make_range(nodes.size() - 3))
       {
         RealVectorValue v3 = *nodes[0] - *nodes[node_offset + 3];
         bool planar = MooseUtils::absoluteFuzzyEqual(v2.cross(v1) * v3, 0);
         if (!planar)
           found_non_planar = true;
       }
 
       if (found_non_planar)
       {
         sides_non_planar++;
         if (sides_non_planar < _num_outputs)
           _console << "Nonplanar side detected for side " << i
                    << " of element :" << elem->get_info() << std::endl;
         else if (sides_non_planar == _num_outputs)
           _console << "Maximum output reached, log is silenced" << std::endl;
       }
     }
   }
   diagnosticsLog("Number of non-planar element sides detected: " +
                      Moose::stringify(sides_non_planar),
                  _check_non_planar_sides,
                  sides_non_planar);
 }

◆ checkSidesetsOrientation()

void MeshDiagnosticsGenerator::checkSidesetsOrientation ( const std::unique_ptr< MeshBase > & mesh ) const

private

Routine to check sideset orientation near subdomains.

Definition at line 193 of file MeshDiagnosticsGenerator.C.

Referenced by generate().

 {
   auto & boundary_info = mesh->get_boundary_info();
   auto side_tuples = boundary_info.build_side_list();
 
   for (const auto bid : boundary_info.get_boundary_ids())
   {
     // This check only looks at subdomains on both sides of the sideset
     // it wont pick up if the sideset is changing orientations while inside of a subdomain
     std::set<std::pair<subdomain_id_type, subdomain_id_type>> block_neighbors;
     for (const auto index : index_range(side_tuples))
     {
       if (std::get<2>(side_tuples[index]) != bid)
         continue;
       const auto elem_ptr = mesh->elem_ptr(std::get<0>(side_tuples[index]));
       if (elem_ptr->neighbor_ptr(std::get<1>(side_tuples[index])))
         block_neighbors.insert(std::make_pair(
             elem_ptr->subdomain_id(),
             elem_ptr->neighbor_ptr(std::get<1>(side_tuples[index]))->subdomain_id()));
     }
 
     // Check that there is no flipped pair
     std::set<std::pair<subdomain_id_type, subdomain_id_type>> flipped_pairs;
     for (const auto & block_pair_1 : block_neighbors)
       for (const auto & block_pair_2 : block_neighbors)
         if (block_pair_1 != block_pair_2)
           if (block_pair_1.first == block_pair_2.second &&
               block_pair_1.second == block_pair_2.first)
             flipped_pairs.insert(block_pair_1);
 
     std::string message;
     const std::string sideset_full_name =
         boundary_info.sideset_name(bid) + " (" + std::to_string(bid) + ")";
     if (!flipped_pairs.empty())
     {
       std::string block_pairs_string = "";
       for (const auto & pair : flipped_pairs)
         block_pairs_string +=
             " [" + mesh->subdomain_name(pair.first) + " (" + std::to_string(pair.first) + "), " +
             mesh->subdomain_name(pair.second) + " (" + std::to_string(pair.second) + ")]";
       message = "Inconsistent orientation of sideset " + sideset_full_name +
                 " with regards to subdomain pairs" + block_pairs_string;
     }
     else
       message = "Sideset " + sideset_full_name +
                 " is consistently oriented with regards to the blocks it neighbors";
 
     diagnosticsLog(message, _check_sidesets_orientation, flipped_pairs.size());
 
     // Now check that there is no sideset radically flipping from one side's normal to another
     // side next to it, in the same sideset
     // We'll consider pi / 2 to be the most steep angle we'll pass
     unsigned int num_normals_flipping = 0;
     Real steepest_side_angles = 0;
     for (const auto & [elem_id, side_id, side_bid] : side_tuples)
     {
       if (side_bid != bid)
         continue;
       const auto & elem_ptr = mesh->elem_ptr(elem_id);
 
       // Get side normal
       const std::unique_ptr<const Elem> face = elem_ptr->build_side_ptr(side_id);
       std::unique_ptr<libMesh::FEBase> fe(
           libMesh::FEBase::build(elem_ptr->dim(), libMesh::FEType(elem_ptr->default_order())));
       libMesh::QGauss qface(elem_ptr->dim() - 1, CONSTANT);
       fe->attach_quadrature_rule(&qface);
       const auto & normals = fe->get_normals();
       fe->reinit(elem_ptr, side_id);
       mooseAssert(normals.size() == 1, "We expected only one normal here");
       const auto & side_normal = normals[0];
 
       // Compare to the sideset normals of neighbor sides in that sideset
       for (const auto neighbor : elem_ptr->neighbor_ptr_range())
         if (neighbor)
           for (const auto neigh_side_index : neighbor->side_index_range())
           {
             // Check that the neighbor side is also in the sideset being examined
             if (!boundary_info.has_boundary_id(neighbor, neigh_side_index, bid))
               continue;
 
             // We re-init everything for the neighbor in case it's a different dimension
             std::unique_ptr<libMesh::FEBase> fe_neighbor(libMesh::FEBase::build(
                 neighbor->dim(), libMesh::FEType(neighbor->default_order())));
             libMesh::QGauss qface(neighbor->dim() - 1, CONSTANT);
             fe_neighbor->attach_quadrature_rule(&qface);
             const auto & neigh_normals = fe_neighbor->get_normals();
             fe_neighbor->reinit(neighbor, neigh_side_index);
             mooseAssert(neigh_normals.size() == 1, "We expected only one normal here");
             const auto & neigh_side_normal = neigh_normals[0];
 
             // Check the angle by computing the dot product
             if (neigh_side_normal * side_normal <= 0)
             {
               num_normals_flipping++;
               steepest_side_angles =
                   std::max(std::acos(neigh_side_normal * side_normal), steepest_side_angles);
               if (num_normals_flipping <= _num_outputs)
                 _console << "Side normals changed by more than pi/2 for sideset "
                          << sideset_full_name << " between side " << side_id << " of element "
                          << elem_ptr->id() << " and side " << neigh_side_index
                          << " of neighbor element " << neighbor->id() << std::endl;
               else if (num_normals_flipping == _num_outputs + 1)
                 _console << "Maximum output reached for sideset normal flipping check. Silencing "
                             "output from now on"
                          << std::endl;
             }
           }
     }
 
     if (num_normals_flipping)
       message = "Sideset " + sideset_full_name +
                 " has two neighboring sides with a very large angle. Largest angle detected: " +
                 std::to_string(steepest_side_angles) + " rad (" +
                 std::to_string(steepest_side_angles * 180 / libMesh::pi) + " degrees).";
     else
       message = "Sideset " + sideset_full_name +
                 " does not appear to have side-to-neighbor-side orientation flips. All neighbor "
                 "sides normal differ by less than pi/2";
 
     diagnosticsLog(message, _check_sidesets_orientation, num_normals_flipping);
   }
 }

◆ checkWatertightNodesets()

void MeshDiagnosticsGenerator::checkWatertightNodesets ( const std::unique_ptr< MeshBase > & mesh ) const

private

Definition at line 382 of file MeshDiagnosticsGenerator.C.

Referenced by generate().

 {
   /*
   Diagnostic Overview:
   1) Mesh precheck
   2) Loop through all elements
   3) Loop through all sides of that element
   4) If side is external loop through its nodes
   5) If node is not associated with any nodeset add to list
   6) Print out node id
   */
   if (mesh->mesh_dimension() < 2)
     mooseError("The nodeset check only works for 2D and 3D meshes");
   auto & boundary_info = mesh->get_boundary_info();
   unsigned int num_nodes_without_nodeset = 0;
   std::set<dof_id_type> checked_nodes_id;
 
   for (const auto elem : mesh->active_element_ptr_range())
   {
     for (const auto i : elem->side_index_range())
     {
       // Check if side is external
       if (elem->neighbor_ptr(i) == nullptr)
       {
         // Side is external, now check nodes
         auto side = elem->side_ptr(i);
         const auto & node_list = side->get_nodes();
         for (unsigned int j = 0; j < side->n_nodes(); j++)
         {
           const auto node = node_list[j];
           if (checked_nodes_id.count(node->id()))
             continue;
           // get vector of node's boundaries (in most cases it will only have one)
           std::vector<boundary_id_type> boundary_ids;
           boundary_info.boundary_ids(node, boundary_ids);
           std::vector<boundary_id_type> intersection =
               findBoundaryOverlap(_watertight_boundaries, boundary_ids);
 
           bool no_specified_ids = boundary_info.n_boundary_ids(node) == 0;
           bool specified_ids = !_watertight_boundaries.empty() && intersection.empty();
           std::string message =
               "Node " + std::to_string(node->id()) +
               " is on an external boundary of the mesh, but has not been assigned to ";
           if (no_specified_ids)
             message = message + "a nodeset";
           else if (specified_ids)
             message = message + "one of the specified nodesets";
           if ((no_specified_ids || specified_ids) && num_nodes_without_nodeset < _num_outputs)
           {
             checked_nodes_id.insert(node->id());
             num_nodes_without_nodeset++;
             _console << message << std::endl;
           }
         }
       }
     }
   }
   std::string message;
   message = "Number of external nodes that have not been assigned to a nodeset: " +
             std::to_string(num_nodes_without_nodeset);
   diagnosticsLog(message, _check_watertight_nodesets, num_nodes_without_nodeset);
 }

◆ checkWatertightSidesets()

void MeshDiagnosticsGenerator::checkWatertightSidesets ( const std::unique_ptr< MeshBase > & mesh ) const

private

Definition at line 317 of file MeshDiagnosticsGenerator.C.

Referenced by generate().

 {
   /*
   Algorithm Overview:
   1) Loop through all elements
   2) For each element loop through all its sides
   3) If it has no neighbors it's an external side
   4) If external check if it's part of a sideset
   */
   if (mesh->mesh_dimension() < 2)
     mooseError("The sideset check only works for 2D and 3D meshes");
   auto & boundary_info = mesh->get_boundary_info();
   boundary_info.build_side_list();
   const auto sideset_map = boundary_info.get_sideset_map();
   unsigned int num_faces_without_sideset = 0;
 
   for (const auto elem : mesh->active_element_ptr_range())
   {
     for (auto i : elem->side_index_range())
     {
       // Check if side is external
       if (elem->neighbor_ptr(i) == nullptr)
       {
         // If external get the boundary ids associated with this side
         std::vector<boundary_id_type> boundary_ids;
         auto side_range = sideset_map.equal_range(elem);
         for (const auto & itr : as_range(side_range))
           if (itr.second.first == i)
             boundary_ids.push_back(i);
         // get intersection of boundary_ids and _watertight_boundaries
         std::vector<boundary_id_type> intersections =
             findBoundaryOverlap(_watertight_boundaries, boundary_ids);
 
         bool no_specified_ids = boundary_ids.empty();
         bool specified_ids = !_watertight_boundaries.empty() && intersections.empty();
         std::string message;
         if (mesh->mesh_dimension() == 3)
           message = "Element " + std::to_string(elem->id()) +
                     " contains an external face which has not been assigned to ";
         else
           message = "Element " + std::to_string(elem->id()) +
                     " contains an external edge which has not been assigned to ";
         if (no_specified_ids)
           message = message + "a sideset";
         else if (specified_ids)
           message = message + "one of the specified sidesets";
         if ((no_specified_ids || specified_ids) && num_faces_without_sideset < _num_outputs)
         {
           _console << message << std::endl;
           num_faces_without_sideset++;
         }
       }
     }
   }
   std::string message;
   if (mesh->mesh_dimension() == 3)
     message = "Number of external element faces that have not been assigned to a sideset: " +
               std::to_string(num_faces_without_sideset);
   else
     message = "Number of external element edges that have not been assigned to a sideset: " +
               std::to_string(num_faces_without_sideset);
   diagnosticsLog(message, _check_watertight_sidesets, num_faces_without_sideset);
 }

◆ connectControllableParams()

void MooseBaseParameterInterface::connectControllableParams	(	const std::string &	parameter,
		const std::string &	object_type,
		const std::string &	object_name,
		const std::string &	object_parameter
	)		const

inherited

Connect controllable parameter of this action with the controllable parameters of the objects added by this action.

Parameters

parameter	Name of the controllable parameter of this action
object_type	Type of the object added by this action.
object_name	Name of the object added by this action.
object_parameter	Name of the parameter of the object.

Definition at line 33 of file MooseBaseParameterInterface.C.

 {
   MooseObjectParameterName primary_name(uniqueName(), parameter);
   const auto base_type = _factory.getValidParams(object_type).get<std::string>("_moose_base");
   MooseObjectParameterName secondary_name(base_type, object_name, object_parameter);
   _moose_base.getMooseApp().getInputParameterWarehouse().addControllableParameterConnection(
       primary_name, secondary_name);
 
   const auto & tags = _pars.get<std::vector<std::string>>("control_tags");
   for (const auto & tag : tags)
   {
     if (!tag.empty())
     {
       // Only adds the parameter with the different control tags if the derived class
       // properly registers the parameter to its own syntax
       MooseObjectParameterName tagged_name(tag, _moose_base.name(), parameter);
       _moose_base.getMooseApp().getInputParameterWarehouse().addControllableParameterConnection(
           tagged_name, secondary_name, /*error_on_empty=*/false);
     }
   }
 }

◆ copyMeshProperty() [1/2]

template<typename T >

T& MeshGenerator::copyMeshProperty	(	const std::string &	target_data_name,
		const std::string &	source_data_name,
		const std::string &	source_mesh
	)

inlineprotectedinherited

Method for copying attribute from input mesh meta-data store to current mesh meta-data store.

This may often be avoided as getMeshProperty calls can traverse the tree of mesh generators to find a metadata instance

Definition at line 233 of file MeshGenerator.h.

   {
     return declareMeshProperty(target_data_name, getMeshProperty<T>(source_data_name, source_mesh));
   }

◆ copyMeshProperty() [2/2]

template<typename T >

T& MeshGenerator::copyMeshProperty	(	const std::string &	source_data_name,
		const std::string &	source_mesh
	)

inlineprotectedinherited

Method for copying attribute from input mesh meta-data store to current mesh meta-data store, keeping source and target data names the same.

This may often be avoided as getMeshProperty calls can traverse the tree of mesh generators to find a metadata instance

Definition at line 246 of file MeshGenerator.h.

   {
     return copyMeshProperty<T>(source_data_name, source_data_name, source_mesh);
   }

◆ declareMeshesForSub()

void MeshGenerator::declareMeshesForSub ( const std::string & param_name )

protectedinherited

Like declareMeshForSub(), but for multiple generators.

Definition at line 215 of file MeshGenerator.C.

 {
   declareMeshesForSubByName(getMeshGeneratorNamesFromParam(param_name));
 }

◆ declareMeshesForSubByName()

void MeshGenerator::declareMeshesForSubByName ( const std::vector< MeshGeneratorName > & mesh_generator_names )

protectedinherited

Like declareMeshForSubByName(), but for multiple generators.

Definition at line 231 of file MeshGenerator.C.

Referenced by MeshGenerator::declareMeshesForSub().

 {
   for (const auto & name : mesh_generator_names)
     declareMeshForSubByName(name);
 }

◆ declareMeshForSub()

void MeshGenerator::declareMeshForSub ( const std::string & param_name )

protectedinherited

Declares that a MeshGenerator referenced in the InputParameters is to be used as a dependency of a sub MeshGenerator created by this MeshGenerator (see addSubMeshGenerator)

You must declare all such MeshGenerators that are passed by parameter to this MeshGenerator but instead used in a sub MeshGenerator. This is in order to declare the intention to use an input mesh as a dependency for a sub generator instead of this one.

Definition at line 209 of file MeshGenerator.C.

Referenced by OverlayMeshGenerator::OverlayMeshGenerator(), and SideSetExtruderGenerator::SideSetExtruderGenerator().

 {
   declareMeshForSubByName(*getMeshGeneratorNameFromParam(param_name, false));
 }

◆ declareMeshForSubByName()

void MeshGenerator::declareMeshForSubByName ( const MeshGeneratorName & mesh_generator_name )

protectedinherited

Like declareMeshForSub(), but takes the name of another MeshGenerator directly.

Definition at line 221 of file MeshGenerator.C.

Referenced by MeshGenerator::declareMeshesForSubByName(), and MeshGenerator::declareMeshForSub().

 {
   checkGetMesh(mesh_generator_name, "");
   if (isNullMeshName(mesh_generator_name))
     return;
 
   _requested_mesh_generators_for_sub.insert(mesh_generator_name);
 }

◆ declareMeshProperty() [1/2]

template<typename T , typename... Args>

T & MeshGenerator::declareMeshProperty	(	const std::string &	data_name,
		Args &&...	args
	)

protectedinherited

Methods for writing out attributes to the mesh meta-data store, which can be retrieved from most other MOOSE systems and is recoverable.

Definition at line 455 of file MeshGenerator.h.

Referenced by AddMetaDataGenerator::AddMetaDataGenerator(), ConcentricCircleMeshGenerator::ConcentricCircleMeshGenerator(), MeshGenerator::copyMeshProperty(), DistributedRectilinearMeshGenerator::DistributedRectilinearMeshGenerator(), ImageMeshGenerator::ImageMeshGenerator(), RinglebMeshGenerator::RinglebMeshGenerator(), and SpiralAnnularMeshGenerator::SpiralAnnularMeshGenerator().

 {
   if (!_app.constructingMeshGenerators())
     mooseError("Can only call declareMeshProperty() during MeshGenerator construction");
 
   // We sort construction ordering so that we _must_ declare before retrieving
   if (hasMeshProperty(data_name))
     mooseError("While declaring mesh property '",
                data_name,
                "' with type '",
                MooseUtils::prettyCppType<T>(),
                "',\nsaid property has already been declared with type '",
                setMeshPropertyHelper(data_name).type(),
                "'");
 
   const auto full_name = meshPropertyName(data_name);
   auto new_T_value =
       std::make_unique<RestartableData<T>>(full_name, nullptr, std::forward<Args>(args)...);
   auto value =
       &_app.registerRestartableData(std::move(new_T_value), 0, false, MooseApp::MESH_META_DATA);
   mooseAssert(value->declared(), "Should be declared");
 
   RestartableData<T> * T_value = dynamic_cast<RestartableData<T> *>(value);
   mooseAssert(T_value, "Bad cast");
 
   return T_value->set();
 }

◆ declareMeshProperty() [2/2]

template<typename T >

T& MeshGenerator::declareMeshProperty	(	const std::string &	data_name,
		const T &	data_value
	)

inlineprotectedinherited

Definition at line 206 of file MeshGenerator.h.

   {
     return declareMeshProperty<T, const T &>(data_name, data_value);
   }

◆ declareNullMeshName()

void MeshGenerator::declareNullMeshName ( const MeshGeneratorName & name )

protectedinherited

Registers the name name as a "null" mesh, which is a MeshGenerator used in InputParameters that will not represent an input mesh when requested via getMesh.

An example use case for this is when you as a developer want users to represent a hole in a mesh pattern that is defined in input.

Definition at line 398 of file MeshGenerator.C.

 {
   mooseAssert(_app.constructingMeshGenerators(), "Should only be called at construction");
   mooseAssert(!_null_mesh_names.count(name), "Already declared");
   _null_mesh_names.insert(name);
 }

◆ diagnosticsLog()

void MeshDiagnosticsGenerator::diagnosticsLog	(	std::string	msg,
		const MooseEnum &	log_level,
		bool	problem_detected
	)		const

private

Utility routine to output the final diagnostics level in the desired mode.

Parameters

msg	the message to output
log_level	the log level to output the message at
problem_detected	if set to false, prevents erroring from the log, despite the log level problem_detected is used to avoid erroring when the log is requested but there are no issues so it should just say "0 problems" with an info message

Definition at line 1579 of file MeshDiagnosticsGenerator.C.

Referenced by checkElementOverlap(), checkElementTypes(), checkElementVolumes(), checkLocalJacobians(), checkNonConformalMesh(), checkNonConformalMeshFromAdaptivity(), checkNonMatchingEdges(), checkNonPlanarSides(), checkSidesetsOrientation(), checkWatertightNodesets(), and checkWatertightSidesets().

 {
   mooseAssert(log_level != "NO_CHECK",
               "We should not be outputting logs if the check had been disabled");
   if (log_level == "INFO" || !problem_detected)
     mooseInfoRepeated(msg);
   else if (log_level == "WARNING")
     mooseWarning(msg);
   else if (log_level == "ERROR")
     mooseError(msg);
   else
     mooseError("Should not reach here");
 }

◆ enabled()

virtual bool MooseObject::enabled ( ) const

inlinevirtualinherited

Return the enabled status of the object.

Reimplemented in EigenKernel.

Definition at line 40 of file MooseObject.h.

Referenced by EigenKernel::enabled().

40 { return _enabled; }

MooseObject::_enabled

const bool & _enabled

Reference to the "enable" InputParameters, used by Controls for toggling on/off MooseObjects.

Definition: MooseObject.h:51

◆ errorPrefix()

std::string MooseBase::errorPrefix ( const std::string & error_type ) const

inherited

Returns: A prefix to be used in errors that contains the input file location associated with this object (if any) and the name and type of the object.

Definition at line 43 of file MooseBase.C.

Referenced by MooseBase::callMooseError(), MooseBaseErrorInterface::mooseDeprecated(), MooseBaseErrorInterface::mooseInfo(), MooseBaseErrorInterface::mooseWarning(), and MooseBaseParameterInterface::paramErrorMsg().

 {
   std::stringstream oss;
   if (const auto node = _params.getHitNode())
     if (!node->isRoot())
       oss << node->fileLocation() << ":\n";
   oss << "The following " << error_type << " occurred in the ";
   if (const auto base_ptr = _params.getBase())
     oss << *base_ptr;
   else
     oss << "object";
   oss << " '" << name() << "' of type " << type() << ".\n\n";
   return oss.str();
 }

◆ findBoundaryOverlap()

std::vector< boundary_id_type > MeshDiagnosticsGenerator::findBoundaryOverlap	(	const std::vector< boundary_id_type > &	watertight_boundaries,
		std::vector< boundary_id_type > &	boundary_ids
	)		const

private

Helper function that finds the intersection between the given vectors.

Definition at line 446 of file MeshDiagnosticsGenerator.C.

Referenced by checkWatertightNodesets(), and checkWatertightSidesets().

 {
   // Only the boundary_ids vector is sorted here. watertight_boundaries has to be sorted beforehand
   // Returns their intersection (elements that they share)
   std::sort(boundary_ids.begin(), boundary_ids.end());
   std::vector<boundary_id_type> boundary_intersection;
   std::set_intersection(watertight_boundaries.begin(),
                         watertight_boundaries.end(),
                         boundary_ids.begin(),
                         boundary_ids.end(),
                         std::back_inserter(boundary_intersection));
   return boundary_intersection;
 }

◆ generate()

std::unique_ptr< MeshBase > MeshDiagnosticsGenerator::generate ( )

overridevirtual

Generate / modify the mesh.

Implements MeshGenerator.

Definition at line 135 of file MeshDiagnosticsGenerator.C.

 {
   std::unique_ptr<MeshBase> mesh = std::move(_input);
 
   // Most of the checks assume we have the full mesh
   if (!mesh->is_serial())
     mooseError("Only serialized meshes are supported");
 
   // We prepare for use at the beginning to facilitate diagnosis
   // This deliberately does not trust the mesh to know whether it's already prepared or not
   mesh->prepare_for_use();
 
   // check that specified boundary is valid, convert BoundaryNames to BoundaryIDs, and sort
   for (const auto & boundary_name : _watertight_boundary_names)
   {
     if (!MooseMeshUtils::hasBoundaryName(*mesh, boundary_name))
       mooseError("User specified boundary_to_check \'", boundary_name, "\' does not exist");
   }
   _watertight_boundaries = MooseMeshUtils::getBoundaryIDs(*mesh, _watertight_boundary_names, false);
   std::sort(_watertight_boundaries.begin(), _watertight_boundaries.end());
 
   if (_check_sidesets_orientation != "NO_CHECK")
     checkSidesetsOrientation(mesh);
 
   if (_check_watertight_sidesets != "NO_CHECK")
     checkWatertightSidesets(mesh);
 
   if (_check_watertight_nodesets != "NO_CHECK")
     checkWatertightNodesets(mesh);
 
   if (_check_element_volumes != "NO_CHECK")
     checkElementVolumes(mesh);
 
   if (_check_element_types != "NO_CHECK")
     checkElementTypes(mesh);
 
   if (_check_element_overlap != "NO_CHECK")
     checkElementOverlap(mesh);
 
   if (_check_non_planar_sides != "NO_CHECK")
     checkNonPlanarSides(mesh);
 
   if (_check_non_conformal_mesh != "NO_CHECK")
     checkNonConformalMesh(mesh);
 
   if (_check_adaptivity_non_conformality != "NO_CHECK")
     checkNonConformalMeshFromAdaptivity(mesh);
 
   if (_check_local_jacobian != "NO_CHECK")
     checkLocalJacobians(mesh);
 
   if (_check_non_matching_edges != "NO_CHECK")
     checkNonMatchingEdges(mesh);
 
   return dynamic_pointer_cast<MeshBase>(mesh);
 }

◆ generateData()

void MeshGenerator::generateData ( )

protectedvirtualinherited

Generate the mesh data.

Reimplemented in AddMetaDataGenerator.

Definition at line 424 of file MeshGenerator.C.

Referenced by MeshGenerator::generateInternal().

 {
   mooseAssert(!hasGenerateData(), "Inconsistent flag");
   mooseError("This MeshGenerator does not have a generateData() implementation.");
 }

◆ generateInternal()

std::unique_ptr< MeshBase > MeshGenerator::generateInternal ( )

inherited

Internal generation method - this is what is actually called within MooseApp to execute the MeshGenerator.

Definition at line 260 of file MeshGenerator.C.

 {
   libmesh_parallel_only(comm());
   mooseAssert(comm().verify(type() + name()), "Inconsistent execution ordering");
 
   if (hasGenerateData())
     generateData();
 
   if (isDataOnly())
     return nullptr;
 
   auto mesh = generate();
   if (!mesh)
     mooseError("A mesh was not generated by this generator (it was nullptr).");
 
   for (const auto & [requested_name, requested_mesh] : _requested_meshes)
     if (*requested_mesh)
       mooseError(
           "The mesh from input ",
           _app.getMeshGenerator(requested_name).type(),
           " '",
           _app.getMeshGenerator(requested_name).name(),
           "' was not moved.\n\nThe MeshGenerator system requires that the memory from all input "
           "meshes\nare managed by the requesting MeshGenerator during the generate phase.\n\nThis "
           "is achieved with a std::move() operation within the generate() method.");
 
   if (getParam<bool>("show_info"))
   {
     const auto mesh_info = mesh->get_info(/* verbosity = */ 2);
 
     // We will prefix all information with "type() 'name()':" because this could potentially
     // output a ton of information and looks a bit better with a prefix
     std::stringstream oss;
     const auto split = MooseUtils::split(mesh_info, "\n");
     if (split.size())
       for (std::size_t i = 0; i < split.size() - 1; ++i) // ignore the last line break
         oss << COLOR_CYAN << "" << type() << " '" << name() << "': " << COLOR_DEFAULT << split[i]
             << std::endl;
     _console << oss.str() << std::flush;
   }
 
   // output the current mesh block to file
   if (hasOutput())
   {
     if (!mesh->is_prepared())
       mesh->prepare_for_use();
 
     if (!getParam<bool>("nemesis"))
     {
       libMesh::ExodusII_IO exio(*mesh);
 
       if (mesh->mesh_dimension() == 1)
         exio.write_as_dimension(3);
 
       // Default to non-HDF5 output for wider compatibility
       exio.set_hdf5_writing(false);
 
       exio.write(name() + "_in.e");
     }
     else
     {
       libMesh::Nemesis_IO nemesis_io(*mesh);
 
       // Default to non-HDF5 output for wider compatibility
       nemesis_io.set_hdf5_writing(false);
 
       nemesis_io.write(name() + "_in.e");
     }
   }
 
   return mesh;
 }

◆ getCheckedPointerParam()

template<typename T >

T MooseBaseParameterInterface::getCheckedPointerParam	(	const std::string &	name,
		const std::string &	error_string = `""`
	)		const

inherited

Verifies that the requested parameter exists and is not NULL and returns it to the caller.

The template parameter must be a pointer or an error will be thrown.

Definition at line 286 of file MooseBaseParameterInterface.h.

 {
   return parameters().getCheckedPointerParam<T>(name, error_string);
 }

◆ getChildMeshGenerators()

const std::set<const MeshGenerator *, Comparator>& MeshGenerator::getChildMeshGenerators ( ) const

inlineinherited

Gets the MeshGenerators that are children to this MeshGenerator.

Definition at line 129 of file MeshGenerator.h.

Referenced by MeshGenerator::isChildMeshGenerator().

   {
     return _child_mesh_generators;
   }

◆ getDataFileName()

std::string DataFileInterface::getDataFileName ( const std::string & param ) const

inherited

Deprecated method.

The data file paths are now automatically set within the InputParameters object, so using getParam<DataFileName>("param_name") is now sufficient.

Definition at line 21 of file DataFileInterface.C.

 {
   _parent.mooseDeprecated("getDataFileName() is deprecated. The file path is now directly set "
                           "within the InputParameters.\nUse getParam<DataFileName>(\"",
                           param,
                           "\") instead.");
   return _parent.getParam<DataFileName>(param);
 }

◆ getDataFileNameByName()

std::string DataFileInterface::getDataFileNameByName ( const std::string & relative_path ) const

inherited

Deprecated method.

Use getDataFilePath() instead.

Definition at line 31 of file DataFileInterface.C.

 {
   _parent.mooseDeprecated("getDataFileNameByName() is deprecated. Use getDataFilePath(\"",
                           relative_path,
                           "\") instead.");
   return getDataFilePath(relative_path);
 }

◆ getDataFilePath()

std::string DataFileInterface::getDataFilePath ( const std::string & relative_path ) const

inherited

Returns the path of a data file for a given relative file path.

This can be used for hardcoded datafile names and will search the same locations as getDataFileName

Definition at line 40 of file DataFileInterface.C.

Referenced by DataFileInterface::getDataFileNameByName().

 {
   // This should only ever be used with relative paths. There is no point to
   // use this search path with an absolute path.
   if (std::filesystem::path(relative_path).is_absolute())
     _parent.mooseWarning("While using getDataFilePath(\"",
                          relative_path,
                          "\"): This API should not be used for absolute paths.");
 
   // Throw on error so that if getPath() fails, we can throw an error
   // with the context of _parent.mooseError()
   const auto throw_on_error_before = Moose::_throw_on_error;
   Moose::_throw_on_error = true;
   std::optional<std::string> error;
 
   // This will search the data paths for this relative path
   Moose::DataFileUtils::Path found_path;
   try
   {
     found_path = Moose::DataFileUtils::getPath(relative_path);
   }
   catch (std::exception & e)
   {
     error = e.what();
   }
 
   Moose::_throw_on_error = throw_on_error_before;
   if (error)
     _parent.mooseError(*error);
 
   mooseAssert(found_path.context == Moose::DataFileUtils::Context::DATA,
               "Should only ever obtain data");
   mooseAssert(found_path.data_name, "Should be set");
 
   const std::string msg =
       "Using data file '" + found_path.path + "' from " + *found_path.data_name + " data";
   _parent.mooseInfo(msg);
 
   return found_path.path;
 }

◆ getMesh()

std::unique_ptr< MeshBase > & MeshGenerator::getMesh	(	const std::string &	param_name,
		const bool	allow_invalid = `false`
	)

protectedinherited

Takes the name of a MeshGeneratorName parameter and then gets a pointer to the Mesh that MeshGenerator is going to create.

That MeshGenerator is made to be a dependency of this one, so will generate() its mesh first.

Parameters

param_name	The name of the parameter that contains the name of the MeshGenerator
allow_invalid	If true, will allow for invalid parameters and will return a nullptr mesh if said parameter does not exist

Returns: The Mesh generated by that MeshGenerator

NOTE: You MUST catch this by reference!

Definition at line 172 of file MeshGenerator.C.

 {
   const MeshGeneratorName * name = getMeshGeneratorNameFromParam(param_name, allow_invalid);
   if (!name)
     return _null_mesh;
   return getMeshByName(*name);
 }

◆ getMeshByName()

std::unique_ptr< MeshBase > & MeshGenerator::getMeshByName ( const MeshGeneratorName & mesh_generator_name )

protectedinherited

Like getMesh(), but takes the name of another MeshGenerator directly.

NOTE: You MUST catch this by reference!

Returns: The Mesh generated by that MeshGenerator

Definition at line 187 of file MeshGenerator.C.

Referenced by MeshGenerator::getMesh(), MeshGenerator::getMeshesByName(), OverlayMeshGenerator::OverlayMeshGenerator(), and SideSetExtruderGenerator::SideSetExtruderGenerator().

 {
   checkGetMesh(mesh_generator_name, "");
   if (isNullMeshName(mesh_generator_name))
     return _null_mesh;
 
   _requested_mesh_generators.insert(mesh_generator_name);
   auto & mesh = _app.getMeshGeneratorSystem().getMeshGeneratorOutput(mesh_generator_name);
   _requested_meshes.emplace_back(mesh_generator_name, &mesh);
   return mesh;
 }

◆ getMeshes()

std::vector< std::unique_ptr< MeshBase > * > MeshGenerator::getMeshes ( const std::string & param_name )

protectedinherited

Like getMesh(), but for multiple generators.

Returns: The generated meshes

Definition at line 181 of file MeshGenerator.C.

 {
   return getMeshesByName(getMeshGeneratorNamesFromParam(param_name));
 }

◆ getMeshesByName()

std::vector< std::unique_ptr< MeshBase > * > MeshGenerator::getMeshesByName ( const std::vector< MeshGeneratorName > & mesh_generator_names )

protectedinherited

Like getMeshByName(), but for multiple generators.

Returns: The generated meshes

Definition at line 200 of file MeshGenerator.C.

Referenced by MeshGenerator::getMeshes().

 {
   std::vector<std::unique_ptr<MeshBase> *> meshes;
   for (const auto & name : mesh_generator_names)
     meshes.push_back(&getMeshByName(name));
   return meshes;
 }

◆ getMeshProperty() [1/2]

template<typename T >

const T & MeshMetaDataInterface::getMeshProperty	(	const std::string &	data_name,
		const std::string &	prefix
	)

protectedinherited

Method for retrieving a property with the given type and name exists in the mesh meta-data store.

This method will throw an error if the property does not exist.

Definition at line 134 of file MeshMetaDataInterface.h.

 {
   if (!hasMeshProperty(data_name, prefix))
     mooseErrorInternal("Failed to get mesh property '", prefix, "/", data_name, "'");
 
   auto value = &getMeshPropertyInternal(data_name, prefix);
   mooseAssert(value->declared(), "Value has not been declared");
   const RestartableData<T> * T_value = dynamic_cast<const RestartableData<T> *>(value);
   if (!T_value)
     mooseErrorInternal("While retrieving mesh property '",
                        prefix,
                        "/",
                        data_name,
                        "' with type '",
                        MooseUtils::prettyCppType<T>(),
                        "',\nthe property exists with different type '",
                        value->type(),
                        "'");
   return T_value->get();
 }

◆ getMeshProperty() [2/2]

template<typename T >

const T& MeshMetaDataInterface::getMeshProperty ( const std::string & data_name )

inlineprotectedinherited

Definition at line 56 of file MeshMetaDataInterface.h.

   {
     return getMeshProperty<T>(data_name, meshPropertyPrefix(data_name));
   }

◆ getMooseApp()

MooseApp& MooseBase::getMooseApp ( ) const

inlineinherited

Get the MooseApp this class is associated with.

Definition at line 45 of file MooseBase.h.

Referenced by ChainControlSetupAction::act(), AddDefaultConvergenceAction::addDefaultMultiAppFixedPointConvergence(), AddDefaultConvergenceAction::addDefaultNonlinearConvergence(), FEProblemBase::advanceState(), ParsedChainControl::buildFunction(), ReporterTransferInterface::checkHasReporterValue(), AddDefaultConvergenceAction::checkUnusedMultiAppFixedPointConvergenceParameters(), AddDefaultConvergenceAction::checkUnusedNonlinearConvergenceParameters(), Coupleable::checkWritableVar(), ComponentPhysicsInterface::ComponentPhysicsInterface(), MooseBaseParameterInterface::connectControllableParams(), Coupleable::Coupleable(), MortarData::createMortarInterface(), EigenProblem::doFreeNonlinearPowerIterations(), Terminator::execute(), FEProblemSolve::FEProblemSolve(), SolutionInvalidInterface::flagInvalidSolutionInternal(), ChainControl::getChainControlDataSystem(), DefaultConvergenceBase::getSharedExecutionerParam(), ChainControlDataPostprocessor::initialSetup(), MaterialPropertyInterface::MaterialPropertyInterface(), MooseVariableDataFV< OutputType >::MooseVariableDataFV(), ProgressOutput::output(), PetscOutputInterface::petscLinearOutput(), PetscOutputInterface::petscNonlinearOutput(), PetscOutputInterface::PetscOutputInterface(), PostprocessorInterface::postprocessorsAdded(), MultiApp::preTransfer(), Reporter::Reporter(), ReporterInterface::reportersAdded(), and VectorPostprocessorInterface::vectorPostprocessorsAdded().

45 { return _app; }

MooseBase::_app

MooseApp & _app

The MOOSE application this is associated with.

Definition: MooseBase.h:84

◆ getParam() [1/2]

template<typename T >

const T & MooseBaseParameterInterface::getParam ( const std::string & name ) const

inherited

Retrieve a parameter for the object.

Parameters

name	The name of the parameter

Returns: The value of the parameter

Definition at line 215 of file MooseBaseParameterInterface.h.

 {
   return InputParameters::getParamHelper(name, _pars, static_cast<T *>(0), &_moose_base);
 }

◆ getParam() [2/2]

template<typename T1 , typename T2 >

std::vector< std::pair< T1, T2 > > MooseBaseParameterInterface::getParam	(	const std::string &	param1,
		const std::string &	param2
	)		const

inherited

Retrieve two parameters and provide pair of parameters for the object.

Parameters

param1	The name of first parameter
param2	The name of second parameter

Returns: Vector of pairs of first and second parameters

Definition at line 279 of file MooseBaseParameterInterface.h.

 {
   return _pars.get<T1, T2>(param1, param2);
 }

◆ getParentMeshGenerators()

const std::set<const MeshGenerator *, Comparator>& MeshGenerator::getParentMeshGenerators ( ) const

inlineinherited

Gets the MeshGenerators that are parents to this MeshGenerator.

Definition at line 122 of file MeshGenerator.h.

Referenced by MeshGeneratorSystem::createMeshGeneratorOrder(), and MeshGenerator::isParentMeshGenerator().

   {
     return _parent_mesh_generators;
   }

◆ getRenamedParam()

template<typename T >

const T & MooseBaseParameterInterface::getRenamedParam	(	const std::string &	old_name,
		const std::string &	new_name
	)		const

inherited

Retrieve a renamed parameter for the object.

This helper makes sure we check both names before erroring, and that only one parameter is passed to avoid silent errors

Parameters

old_name	the old name for the parameter
new_name	the new name for the parameter

Definition at line 229 of file MooseBaseParameterInterface.h.

 {
   // this enables having a default on the new parameter but bypassing it with the old one
   // Most important: accept new parameter
   if (isParamSetByUser(new_name) && !isParamValid(old_name))
     return InputParameters::getParamHelper(new_name, _pars, static_cast<T *>(0), &_moose_base);
   // Second most: accept old parameter
   else if (isParamValid(old_name) && !isParamSetByUser(new_name))
     return InputParameters::getParamHelper(old_name, _pars, static_cast<T *>(0), &_moose_base);
   // Third most: accept default for new parameter
   else if (isParamValid(new_name) && !isParamValid(old_name))
     return InputParameters::getParamHelper(new_name, _pars, static_cast<T *>(0), &_moose_base);
   // Refuse: no default, no value passed
   else if (!isParamValid(old_name) && !isParamValid(new_name))
     mooseError(_pars.blockFullpath() + ": parameter '" + new_name +
                "' is being retrieved without being set.\n"
                "Did you misspell it?");
   // Refuse: both old and new parameters set by user
   else
     mooseError(_pars.blockFullpath() + ": parameter '" + new_name +
                "' may not be provided alongside former parameter '" + old_name + "'");
 }

◆ getRequestedMeshGenerators()

const std::set<MeshGeneratorName>& MeshGenerator::getRequestedMeshGenerators ( ) const

inlineinherited

Returns: The names of the MeshGenerators that were requested in the getMesh methods

Definition at line 80 of file MeshGenerator.h.

   {
     return _requested_mesh_generators;
   }

◆ getRequestedMeshGeneratorsForSub()

const std::set<MeshGeneratorName>& MeshGenerator::getRequestedMeshGeneratorsForSub ( ) const

inlineinherited

Returns: The names of the MeshGenerators that were requested in the declareMeshForSub methods

Definition at line 88 of file MeshGenerator.h.

   {
     return _requested_mesh_generators_for_sub;
   }

◆ getSavedMeshName()

const std::string & MeshGenerator::getSavedMeshName ( ) const

inherited

Return the name of the saved mesh.

Definition at line 418 of file MeshGenerator.C.

 {
   return _save_with_name;
 }

◆ getSharedPtr() [1/2]

std::shared_ptr< MooseObject > MooseObject::getSharedPtr ( )

inherited

Get another shared pointer to this object that has the same ownership group.

Wrapper around shared_from_this().

Definition at line 68 of file MooseObject.C.

Referenced by MFEMProblem::addBoundaryCondition(), MFEMProblem::addKernel(), and MFEMProblem::addMFEMSolver().

 {
   try
   {
     return shared_from_this();
   }
   catch (std::bad_weak_ptr &)
   {
     mooseError(not_shared_error);
   }
 }

◆ getSharedPtr() [2/2]

std::shared_ptr< const MooseObject > MooseObject::getSharedPtr ( ) const

inherited

Definition at line 81 of file MooseObject.C.

 {
   try
   {
     return shared_from_this();
   }
   catch (std::bad_weak_ptr &)
   {
     mooseError(not_shared_error);
   }
 }

◆ getSubMeshGenerators()

const std::set<const MeshGenerator *, Comparator>& MeshGenerator::getSubMeshGenerators ( ) const

inlineinherited

Gets the MeshGenerators that are children to this MeshGenerator.

Definition at line 136 of file MeshGenerator.h.

   {
     return _sub_mesh_generators;
   }

◆ hasGenerateData() [1/2]

bool MeshGenerator::hasGenerateData ( const InputParameters & params )

staticinherited

Returns: Whether or not the mesh generator noted by the given parameters has a generateData() implementation

Definition at line 86 of file MeshGenerator.C.

 {
   return params.get<bool>("_has_generate_data");
 }

◆ hasGenerateData() [2/2]

bool MeshGenerator::hasGenerateData ( ) const

inlineinherited

Returns: Whether or not this generator has a generateData() implementation

Definition at line 185 of file MeshGenerator.h.

Referenced by MeshGenerator::generateData(), MeshGenerator::generateInternal(), MeshGenerator::hasGenerateData(), and MeshGenerator::MeshGenerator().

185 { return hasGenerateData(_pars); }

MeshGenerator::hasGenerateData

bool hasGenerateData() const

Definition: MeshGenerator.h:185

MooseBaseParameterInterface::_pars

const InputParameters & _pars

Parameters of this object, references the InputParameters stored in the InputParametersWarehouse.

Definition: MooseBaseParameterInterface.h:173

◆ hasMeshProperty() [1/4]

bool MeshMetaDataInterface::hasMeshProperty	(	const std::string &	data_name,
		const std::string &	prefix
	)		const

protectedinherited

Returns: Whether or not a mesh meta-data exists.

Definition at line 25 of file MeshMetaDataInterface.C.

Referenced by MeshGenerator::declareMeshProperty(), MeshMetaDataInterface::getMeshProperty(), MeshMetaDataInterface::hasMeshProperty(), and MeshGenerator::setMeshProperty().

 {
   return _meta_data_app.hasRestartableMetaData(meshPropertyName(data_name, prefix),
                                                MooseApp::MESH_META_DATA);
 }

◆ hasMeshProperty() [2/4]

template<typename T >

bool MeshMetaDataInterface::hasMeshProperty	(	const std::string &	data_name,
		const std::string &	prefix
	)		const

protectedinherited

Returns: Whether or not a mesh meta-data exists with the given type.

Definition at line 158 of file MeshMetaDataInterface.h.

 {
   if (!hasMeshProperty(data_name, prefix))
     return false;
   const auto & value = getMeshPropertyInternal(data_name, prefix);
   return dynamic_cast<const RestartableData<T> *>(&value) != nullptr;
 }

◆ hasMeshProperty() [3/4]

bool MeshMetaDataInterface::hasMeshProperty ( const std::string & data_name ) const

inlineprotectedinherited

Returns: Whether or not a mesh meta-data exists with the default prefix.

Definition at line 74 of file MeshMetaDataInterface.h.

   {
     return hasMeshProperty(data_name, meshPropertyPrefix(data_name));
   }

◆ hasMeshProperty() [4/4]

template<typename T >

bool MeshMetaDataInterface::hasMeshProperty ( const std::string & data_name ) const

inlineprotectedinherited

Returns: Whether or not a mesh meta-data exists with the default prefix and the given type.

Definition at line 82 of file MeshMetaDataInterface.h.

   {
     return hasMeshProperty<T>(data_name, meshPropertyPrefix(data_name));
   }

◆ hasOutput()

bool MeshGenerator::hasOutput ( ) const

inherited

Returns: Whether or not to output this mesh generator separately (output parameter is set)

Definition at line 412 of file MeshGenerator.C.

Referenced by MeshGeneratorSystem::createMeshGeneratorOrder(), and MeshGenerator::generateInternal().

 {
   return getParam<bool>("output");
 }

◆ hasSaveMesh()

bool MeshGenerator::hasSaveMesh ( ) const

inherited

Return whether or not to save the current mesh.

Definition at line 406 of file MeshGenerator.C.

Referenced by MeshGeneratorSystem::createMeshGeneratorOrder(), and MeshGenerator::MeshGenerator().

 {
   return _save_with_name.size();
 }

◆ isChildMeshGenerator()

bool MeshGenerator::isChildMeshGenerator	(	const MeshGeneratorName &	name,
		const bool	direct = `true`
	)		const

inherited

Returns: Whether or not the MeshGenerator with the name name is a child of this MeshGenerator.

If direct = true, check only immediate children of this generator. Otherwise, check all children.

Definition at line 385 of file MeshGenerator.C.

Referenced by MeshGeneratorSystem::createMeshGeneratorOrder().

 {
   return std::find_if(getChildMeshGenerators().begin(),
                       getChildMeshGenerators().end(),
                       [&name, &direct](const auto & mg)
                       {
                         return mg->name() == name ||
                                (!direct && mg->isChildMeshGenerator(name, /* direct = */ false));
                       }) != getChildMeshGenerators().end();
 }

◆ isDataOnly()

bool MeshGenerator::isDataOnly ( ) const

inlineinherited

Returns: Whether or not this generator is to be generated in data-only mode

Definition at line 190 of file MeshGenerator.h.

Referenced by MeshGenerator::addMeshSubgenerator(), MeshGenerator::generateInternal(), and MeshGenerator::MeshGenerator().

190 { return _data_only; }

MeshGenerator::_data_only

const bool _data_only

Whether or not this mesh generator will run in data only mode.

Definition: MeshGenerator.h:450

◆ isNullMeshName()

bool MeshGenerator::isNullMeshName ( const MeshGeneratorName & name ) const

inlineinherited

Returns: Whether or not the name name is registered as a "null" mesh, that is, a MeshGenerator that will not represent an input mesh when requested via getMesh.

See declareNullMeshName().

Definition at line 165 of file MeshGenerator.h.

Referenced by MeshGenerator::checkGetMesh(), MeshGenerator::declareMeshForSubByName(), and MeshGenerator::getMeshByName().

165 { return _null_mesh_names.count(name); }

MeshGenerator::_null_mesh_names

std::set< std::string > _null_mesh_names

The declared "null" mesh names that will not represent a mesh in input; see declareNullMeshName() ...

Definition: MeshGenerator.h:444

MooseBase::name

virtual const std::string & name() const

Get the name of the class.

Definition: MooseBase.h:57

◆ isParamSetByUser()

bool MooseBaseParameterInterface::isParamSetByUser ( const std::string & nm ) const

inlineinherited

Test if the supplied parameter is set by a user, as opposed to not set or set to default.

Parameters

nm	The name of the parameter to test

Definition at line 128 of file MooseBaseParameterInterface.h.

Referenced by SetupDebugAction::act(), ADConservativeAdvectionBC::ADConservativeAdvectionBC(), DiffusionCG::addFEBCs(), DiffusionPhysicsBase::addInitialConditions(), MFEMMesh::buildMesh(), LibtorchNeuralNetControl::conditionalParameterError(), DiffusionPhysicsBase::DiffusionPhysicsBase(), ElementSubdomainModifierBase::ElementSubdomainModifierBase(), MooseBaseParameterInterface::getRenamedParam(), DefaultConvergenceBase::getSharedExecutionerParam(), AddVariableAction::init(), PhysicsBase::initializePhysics(), ElementSubdomainModifierBase::initialSetup(), MatrixSymmetryCheck::MatrixSymmetryCheck(), MeshDiagnosticsGenerator(), MultiAppGeneralFieldTransfer::MultiAppGeneralFieldTransfer(), SolutionInvalidityOutput::output(), Output::Output(), MultiAppGeneralFieldTransfer::outputValueConflicts(), PetscExternalPartitioner::partition(), PiecewiseTabularBase::PiecewiseTabularBase(), MooseMesh::prepare(), SolutionUserObjectBase::readXda(), PhysicsBase::reportPotentiallyMissedParameters(), MFEMSolverBase::setPreconditioner(), SideSetsFromBoundingBoxGenerator::SideSetsFromBoundingBoxGenerator(), TimedSubdomainModifier::TimedSubdomainModifier(), and XYDelaunayGenerator::XYDelaunayGenerator().

128 { return _pars.isParamSetByUser(nm); }

InputParameters::isParamSetByUser

bool isParamSetByUser(const std::string &name) const

Method returns true if the parameter was set by the user.

Definition: InputParameters.C:1178

MooseBaseParameterInterface::_pars

const InputParameters & _pars

Parameters of this object, references the InputParameters stored in the InputParametersWarehouse.

Definition: MooseBaseParameterInterface.h:173

◆ isParamValid()

bool MooseBaseParameterInterface::isParamValid ( const std::string & name ) const

inlineinherited

Test if the supplied parameter is valid.

Parameters

name	The name of the parameter to test

Definition at line 122 of file MooseBaseParameterInterface.h.

122 { return _pars.isParamValid(name); }

MooseBaseParameterInterface::_pars

const InputParameters & _pars

Parameters of this object, references the InputParameters stored in the InputParametersWarehouse.

Definition: MooseBaseParameterInterface.h:173

InputParameters::isParamValid

bool isParamValid(const std::string &name) const

This method returns parameters that have been initialized in one fashion or another, i.e.

Definition: InputParameters.C:390

◆ isParentMeshGenerator()

bool MeshGenerator::isParentMeshGenerator	(	const MeshGeneratorName &	name,
		const bool	direct = `true`
	)		const

inherited

Returns: Whether or not the MeshGenerator with the name name is a parent of this MeshGenerator.

If direct = true, check only immediate parents of this generator. Otherwise, check all parents.

Definition at line 372 of file MeshGenerator.C.

 {
   return std::find_if(getParentMeshGenerators().begin(),
                       getParentMeshGenerators().end(),
                       [&name, &direct](const auto & mg)
                       {
                         return mg->name() == name ||
                                (!direct && mg->isParentMeshGenerator(name, /* direct = */ false));
                       }) != getParentMeshGenerators().end();
 }

◆ meshPropertyName() [1/2]

std::string MeshMetaDataInterface::meshPropertyName	(	const std::string &	data_name,
		const std::string &	prefix
	)

staticprotectedinherited

Returns: The full name for mesh property data.

Definition at line 33 of file MeshMetaDataInterface.C.

Referenced by MeshGenerator::declareMeshProperty(), MeshMetaDataInterface::getMeshPropertyInternal(), MeshMetaDataInterface::hasMeshProperty(), MeshMetaDataInterface::meshPropertyName(), and MeshGenerator::setMeshPropertyHelper().

 {
   return std::string(SYSTEM) + "/" + prefix + "/" + data_name;
 }

◆ meshPropertyName() [2/2]

std::string MeshMetaDataInterface::meshPropertyName ( const std::string & data_name ) const

inlineprotectedinherited

Returns: The default mesh property name for mesh property data

Definition at line 95 of file MeshMetaDataInterface.h.

   {
     return meshPropertyName(data_name, meshPropertyPrefix(data_name));
   }

◆ mooseDeprecated()

template<typename... Args>

void MooseBaseErrorInterface::mooseDeprecated ( Args &&... args ) const

inlineinherited

Definition at line 91 of file MooseBaseErrorInterface.h.

Referenced by FEProblemBase::addAuxArrayVariable(), FEProblemBase::addAuxScalarVariable(), FEProblemBase::addAuxVariable(), FEProblemBase::advanceMultiApps(), MultiApp::appProblem(), MooseMesh::buildSideList(), ChangeOverTimestepPostprocessor::ChangeOverTimestepPostprocessor(), AddVariableAction::determineType(), EigenProblem::EigenProblem(), Eigenvalue::Eigenvalue(), MooseMesh::elem(), UserForcingFunction::f(), FaceFaceConstraint::FaceFaceConstraint(), FunctionDT::FunctionDT(), RandomICBase::generateRandom(), MooseMesh::getBoundariesToElems(), DataFileInterface::getDataFileName(), DataFileInterface::getDataFileNameByName(), Control::getExecuteOptions(), FEProblemBase::getNonlinearSystem(), FEProblemBase::getUserObjects(), FEProblemBase::hasPostprocessor(), MatDiffusionBase< Real >::MatDiffusionBase(), MultiAppNearestNodeTransfer::MultiAppNearestNodeTransfer(), MultiAppShapeEvaluationTransfer::MultiAppShapeEvaluationTransfer(), MultiAppUserObjectTransfer::MultiAppUserObjectTransfer(), NodalScalarKernel::NodalScalarKernel(), MooseMesh::node(), FixedPointSolve::numPicardIts(), RelationshipManager::operator>=(), PercentChangePostprocessor::PercentChangePostprocessor(), ReferenceResidualConvergence::ReferenceResidualConvergence(), Residual::Residual(), MooseMesh::setBoundaryToNormalMap(), Exodus::setOutputDimension(), and UserForcingFunction::UserForcingFunction().

   {
     moose::internal::mooseDeprecatedStream(
         _console, false, true, _moose_base.errorPrefix("deprecation"), std::forward<Args>(args)...);
   }

◆ mooseDocumentedError()

template<typename... Args>

void MooseBaseErrorInterface::mooseDocumentedError	(	const std::string &	repo_name,
		const unsigned int	issue_num,
		Args &&...	args
	)		const

inlineinherited

Emits a documented error with object name and type.

Documented errors are errors that have an issue associated with them.

The repository name repo_name links a named repository to a URL and should be registered at the application level with registerRepository(). See Moose.C for an example of the "moose" repository registration.

Parameters

repo_name	The repository name where the issue resides
issue_num	The number of the issue
args	The error message to be combined

Definition at line 61 of file MooseBaseErrorInterface.h.

Referenced by ArrayDGLowerDKernel::ArrayDGLowerDKernel(), ArrayHFEMDirichletBC::ArrayHFEMDirichletBC(), ArrayLowerDIntegratedBC::ArrayLowerDIntegratedBC(), DGLowerDKernel::DGLowerDKernel(), HFEMDirichletBC::HFEMDirichletBC(), and LowerDIntegratedBC::LowerDIntegratedBC().

   {
     std::ostringstream oss;
     moose::internal::mooseStreamAll(oss, std::forward<Args>(args)...);
     const auto msg = moose::internal::formatMooseDocumentedError(repo_name, issue_num, oss.str());
     _moose_base.callMooseError(msg, /* with_prefix = */ true);
   }

◆ mooseError()

template<typename... Args>

void MooseBaseErrorInterface::mooseError ( Args &&... args ) const

inlineinherited

Emits an error prefixed with object name and type.

Definition at line 29 of file MooseBaseErrorInterface.h.

   {
     std::ostringstream oss;
     moose::internal::mooseStreamAll(oss, std::forward<Args>(args)...);
     _moose_base.callMooseError(oss.str(), /* with_prefix = */ true);
   }

◆ mooseErrorNonPrefixed()

template<typename... Args>

void MooseBaseErrorInterface::mooseErrorNonPrefixed ( Args &&... args ) const

inlineinherited

Emits an error without the prefixing included in mooseError().

Definition at line 40 of file MooseBaseErrorInterface.h.

   {
     std::ostringstream oss;
     moose::internal::mooseStreamAll(oss, std::forward<Args>(args)...);
     _moose_base.callMooseError(oss.str(), /* with_prefix = */ false);
   }

◆ mooseInfo()

template<typename... Args>

void MooseBaseErrorInterface::mooseInfo ( Args &&... args ) const

inlineinherited

Definition at line 98 of file MooseBaseErrorInterface.h.

Referenced by SetupRecoverFileBaseAction::act(), AStableDirk4::AStableDirk4(), checkNonConformalMeshFromAdaptivity(), MultiAppGeneralFieldNearestLocationTransfer::evaluateInterpValuesNearestNode(), PIDTransientControl::execute(), ExplicitRK2::ExplicitRK2(), ExplicitTVDRK2::ExplicitTVDRK2(), DataFileInterface::getDataFilePath(), MFEMScalarFESpace::getFECName(), MultiAppTransfer::getPointInTargetAppFrame(), ImplicitMidpoint::ImplicitMidpoint(), ParsedDownSelectionPositions::initialize(), PropertyReadFile::initialize(), MultiAppGeneralFieldTransfer::initialSetup(), InversePowerMethod::InversePowerMethod(), LStableDirk2::LStableDirk2(), LStableDirk3::LStableDirk3(), LStableDirk4::LStableDirk4(), PNGOutput::makeMeshFunc(), NonlinearEigen::NonlinearEigen(), SolutionInvalidityOutput::output(), MultiAppGeneralFieldTransfer::outputValueConflicts(), ProjectionAux::ProjectionAux(), ReferenceResidualConvergence::ReferenceResidualConvergence(), MFEMDataCollection::registerFields(), FEProblemBase::setRestartFile(), SolutionUserObjectBase::SolutionUserObjectBase(), and SymmetryTransformGenerator::SymmetryTransformGenerator().

   {
     moose::internal::mooseInfoStream(
         _console, _moose_base.errorPrefix("information"), std::forward<Args>(args)...);
   }

◆ mooseWarning()

template<typename... Args>

void MooseBaseErrorInterface::mooseWarning ( Args &&... args ) const

inlineinherited

Emits a warning prefixed with object name and type.

Definition at line 75 of file MooseBaseErrorInterface.h.

Referenced by CopyMeshPartitioner::_do_partition(), AddKernelAction::act(), MeshOnlyAction::act(), AddFunctionAction::act(), MaterialOutputAction::act(), CommonOutputAction::act(), MFEMProblem::addFunction(), MooseMesh::addPeriodicVariable(), DiracKernelBase::addPoint(), BoundaryMarker::BoundaryMarker(), DistributedRectilinearMeshGenerator::buildCube(), MultiAppVariableValueSamplePostprocessorTransfer::cacheElemToPostprocessorData(), CartesianMeshGenerator::CartesianMeshGenerator(), CheckOutputAction::checkConsoleOutput(), MultiAppTransfer::checkMultiAppExecuteOn(), checkNonMatchingEdges(), ActionComponent::checkRequiredTasks(), PhysicsBase::checkRequiredTasks(), SampledOutput::cloneMesh(), MultiAppGeneralFieldTransfer::closestToPosition(), VariableValueElementSubdomainModifier::computeSubdomainID(), GapValueAux::computeValue(), MultiApp::createApp(), DebugResidualAux::DebugResidualAux(), diagnosticsLog(), CylindricalGridDivision::divisionIndex(), SphericalGridDivision::divisionIndex(), CartesianGridDivision::divisionIndex(), ElementMaterialSampler::ElementMaterialSampler(), Postprocessor::evaluateDotWarning(), MeshDivisionFunctorReductionVectorPostprocessor::execute(), ElementQualityChecker::finalize(), FiniteDifferencePreconditioner::FiniteDifferencePreconditioner(), FixedPointSolve::FixedPointSolve(), SubdomainPerElementGenerator::generate(), StitchedMeshGenerator::generate(), ParsedGenerateSideset::generate(), MultiAppTransfer::getAppInfo(), FunctorBinnedValuesDivision::getBinIndex(), DataFileInterface::getDataFilePath(), PointSamplerBase::getLocalElemContainingPoint(), FEProblemBase::getMaterial(), LineValueSampler::getValue(), Terminator::handleMessage(), IndicatorMarker::IndicatorMarker(), SphericalGridDivision::initialize(), CylindricalGridDivision::initialize(), ElementGroupCentroidPositions::initialize(), CartesianGridDivision::initialize(), MultiAppGeneralFieldNearestLocationTransfer::initialSetup(), BoundsBase::initialSetup(), ReferenceResidualConvergence::initialSetup(), MultiAppGeneralFieldTransfer::initialSetup(), FEProblemBase::initialSetup(), AdvancedOutput::initPostprocessorOrVectorPostprocessorLists(), MaterialBase::initStatefulProperties(), LeastSquaresFit::LeastSquaresFit(), IterationAdaptiveDT::limitDTToPostprocessorValue(), FEProblemBase::mesh(), MultiAppGeneralFieldTransfer::MultiAppGeneralFieldTransfer(), NewmarkBeta::NewmarkBeta(), NodalPatchRecovery::NodalPatchRecovery(), NonlocalIntegratedBC::NonlocalIntegratedBC(), NonlocalKernel::NonlocalKernel(), Output::Output(), MultiAppGeneralFieldTransfer::outputValueConflicts(), PiecewiseConstantFromCSV::PiecewiseConstantFromCSV(), Executioner::problem(), PropertyReadFile::readData(), TestSourceStepper::rejectStep(), PhysicsBase::reportPotentiallyMissedParameters(), MaterialBase::resetQpProperties(), SecondTimeDerivativeAux::SecondTimeDerivativeAux(), MooseMesh::setCoordSystem(), SidesetAroundSubdomainUpdater::SidesetAroundSubdomainUpdater(), FEProblemBase::sizeZeroes(), TransientMultiApp::solveStep(), Tecplot::Tecplot(), TimeDerivativeAux::TimeDerivativeAux(), Checkpoint::updateCheckpointFiles(), SampledOutput::updateSample(), PiecewiseConstantFromCSV::value(), and VariableCondensationPreconditioner::VariableCondensationPreconditioner().

   {
     moose::internal::mooseWarningStream(
         _console, _moose_base.errorPrefix("warning"), std::forward<Args>(args)...);
   }

◆ mooseWarningNonPrefixed()

template<typename... Args>

void MooseBaseErrorInterface::mooseWarningNonPrefixed ( Args &&... args ) const

inlineinherited

Emits a warning without the prefixing included in mooseWarning().

Definition at line 85 of file MooseBaseErrorInterface.h.

   {
     moose::internal::mooseWarningStream(_console, std::forward<Args>(args)...);
   }

◆ name()

virtual const std::string& MooseBase::name ( ) const

inlinevirtualinherited

Get the name of the class.

Returns: The name of the class

Reimplemented in MooseVariableBase.

Definition at line 57 of file MooseBase.h.

57 { return _name; }

MooseBase::_name

const std::string _name

The name of this class.

Definition: MooseBase.h:90

◆ paramError()

template<typename... Args>

void MooseBaseParameterInterface::paramError	(	const std::string &	param,
		Args...	args
	)		const

inherited

Emits an error prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message.

If this object's parameters were not created directly by the Parser, then this function falls back to the normal behavior of mooseError - only printing a message using the given args.

Definition at line 255 of file MooseBaseParameterInterface.h.

 {
   Moose::show_trace = false;
   _moose_base.callMooseError(paramErrorMsg(param, std::forward<Args>(args)...),
                              /* with_prefix = */ false);
   Moose::show_trace = true;
 }

◆ parameters()

const InputParameters& MooseBaseParameterInterface::parameters ( ) const

inlineinherited

Get the parameters of the object.

Returns: The parameters of the object

Definition at line 62 of file MooseBaseParameterInterface.h.

62 { return _pars; }

MooseBaseParameterInterface::_pars

const InputParameters & _pars

Parameters of this object, references the InputParameters stored in the InputParametersWarehouse.

Definition: MooseBaseParameterInterface.h:173

◆ paramInfo()

template<typename... Args>

void MooseBaseParameterInterface::paramInfo	(	const std::string &	param,
		Args...	args
	)		const

inherited

Emits an informational message prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message.

If this object's parameters were not created directly by the Parser, then this function falls back to the normal behavior of mooseInfo - only printing a message using the given args.

Definition at line 272 of file MooseBaseParameterInterface.h.

Referenced by GridPartitioner::_do_partition(), ComboMarker::ComboMarker(), FunctorIC::FunctorIC(), and TransientMultiApp::TransientMultiApp().

 {
   mooseInfo(paramErrorMsg(param, std::forward<Args>(args)...));
 }

◆ paramWarning()

template<typename... Args>

void MooseBaseParameterInterface::paramWarning	(	const std::string &	param,
		Args...	args
	)		const

inherited

Emits a warning prefixed with the file and line number of the given param (from the input file) along with the full parameter path+name followed by the given args as the message.

If this object's parameters were not created directly by the Parser, then this function falls back to the normal behavior of mooseWarning - only printing a message using the given args.

Definition at line 265 of file MooseBaseParameterInterface.h.

Referenced by GridPartitioner::_do_partition(), EigenProblem::checkProblemIntegrity(), CombinerGenerator::copyIntoMesh(), DefaultMultiAppFixedPointConvergence::DefaultMultiAppFixedPointConvergence(), MultiAppNearestNodeTransfer::execute(), FEProblemSolve::FEProblemSolve(), UniqueExtraIDMeshGenerator::generate(), PlaneIDMeshGenerator::generate(), Terminator::initialSetup(), SampledOutput::initSample(), MooseMesh::MooseMesh(), FEProblemBase::setPreserveMatrixSparsityPattern(), and Terminator::Terminator().

 {
   mooseWarning(paramErrorMsg(param, std::forward<Args>(args)...));
 }

◆ queryParam()

template<typename T >

const T * MooseBaseParameterInterface::queryParam ( const std::string & name ) const

inherited

Query a parameter for the object.

If the parameter is not valid, nullptr will be returned

Parameters

name	The name of the parameter

Returns: A pointer to the parameter value, if it exists

Definition at line 222 of file MooseBaseParameterInterface.h.

 {
   return isParamValid(name) ? &getParam<T>(name) : nullptr;
 }

◆ setHasGenerateData()

void MeshGenerator::setHasGenerateData ( InputParameters & params )

staticinherited

Sets that a mesh generator has a generateData() implementation.

This must be called in the validParams() implementation for all mesh generators that implement generateData().

Definition at line 80 of file MeshGenerator.C.

Referenced by AddMetaDataGenerator::validParams().

 {
   params.set<bool>("_has_generate_data") = true;
 }

◆ setMeshProperty() [1/2]

template<typename T , typename... Args>

T & MeshGenerator::setMeshProperty	(	const std::string &	data_name,
		Args &&...	args
	)

protectedinherited

Method for updating attributes to the mesh meta-data store, which can only be invoked in the MeshGenerator generate routine only if the mesh generator property has already been declared.

Definition at line 485 of file MeshGenerator.h.

 {
   if (_app.actionWarehouse().getCurrentTaskName() != "execute_mesh_generators")
     mooseError("Updating mesh meta data with setMeshProperty() can only be called during "
                "MeshGenerator::generate()");
 
   if (!hasMeshProperty(data_name))
     mooseError("Failed to get the mesh property '", data_name, "'");
   RestartableDataValue * value = &setMeshPropertyHelper(data_name);
   RestartableData<T> * T_value = dynamic_cast<RestartableData<T> *>(value);
   if (!T_value)
     mooseError("While retrieving mesh property '",
                data_name,
                "' with type '",
                MooseUtils::prettyCppType<T>(),
                "',\nthe property was found with type '",
                value->type(),
                "'");
 
   // Set the value if someone provided arguments to set it to
   if constexpr (sizeof...(args) > 0)
     T_value->set() = T(std::forward<Args>(args)...);
 
   return T_value->set();
 }

◆ setMeshProperty() [2/2]

template<typename T >

T& MeshGenerator::setMeshProperty	(	const std::string &	data_name,
		const T &	data_value
	)

inlineprotectedinherited

Definition at line 221 of file MeshGenerator.h.

   {
     return setMeshProperty<T, const T &>(data_name, data_value);
   }

◆ type()

const std::string& MooseBase::type ( ) const

inlineinherited

Get the type of this class.

Returns: the name of the type of this class

Definition at line 51 of file MooseBase.h.

51 { return _type; }

MooseBase::_type

const std::string _type

The type of this class.

Definition: MooseBase.h:87

◆ typeAndName()

std::string MooseBase::typeAndName ( ) const

inherited

Get the class's combined type and name; useful in error handling.

Returns: The type and name of this class in the form '<type()> "<name()>"'.

Definition at line 27 of file MooseBase.C.

Referenced by MaterialPropertyStorage::addProperty(), MeshGeneratorSystem::dataDrivenError(), ReporterContext< std::vector< T > >::finalize(), and ReporterData::getReporterInfo().

 {
   return type() + std::string(" \"") + name() + std::string("\"");
 }

◆ uniqueName()

MooseObjectName MooseBaseParameterInterface::uniqueName ( ) const

inlineinherited

The unique name for accessing input parameters of this object in the InputParameterWarehouse.

Definition at line 67 of file MooseBaseParameterInterface.h.

Referenced by MooseBaseParameterInterface::connectControllableParams(), and Action::uniqueActionName().

   {
     return MooseObjectName(_pars.get<std::string>("_unique_name"));
   }

◆ uniqueParameterName()

MooseObjectParameterName MooseBaseParameterInterface::uniqueParameterName ( const std::string & parameter_name ) const

inlineinherited

The unique parameter name of a valid parameter of this object for accessing parameter controls.

Definition at line 52 of file MooseBaseParameterInterface.h.

   {
     return MooseObjectParameterName(
         _pars.get<std::string>("_moose_base"), _moose_base.name(), parameter_name);
   }

◆ validParams()

InputParameters MeshDiagnosticsGenerator::validParams ( )

static

Definition at line 30 of file MeshDiagnosticsGenerator.C.

 {
 
   InputParameters params = MeshGenerator::validParams();
 
   params.addRequiredParam<MeshGeneratorName>("input", "The mesh we want to diagnose");
   params.addClassDescription("Runs a series of diagnostics on the mesh to detect potential issues "
                              "such as unsupported features");
 
   // Options for the output level
   MooseEnum chk_option("NO_CHECK INFO WARNING ERROR", "NO_CHECK");
 
   params.addParam<MooseEnum>(
       "examine_sidesets_orientation",
       chk_option,
       "whether to check that sidesets are consistently oriented using neighbor subdomains. If a "
       "sideset is inconsistently oriented within a subdomain, this will not be detected");
   params.addParam<MooseEnum>(
       "check_for_watertight_sidesets",
       chk_option,
       "whether to check for external sides that are not assigned to any sidesets");
   params.addParam<MooseEnum>(
       "check_for_watertight_nodesets",
       chk_option,
       "whether to check for external nodes that are not assigned to any nodeset");
   params.addParam<std::vector<BoundaryName>>(
       "boundaries_to_check",
       {},
       "Names boundaries that should form a watertight envelope around the mesh. Defaults to all "
       "the boundaries combined.");
   params.addParam<MooseEnum>(
       "examine_element_volumes", chk_option, "whether to examine volume of the elements");
   params.addParam<Real>("minimum_element_volumes", 1e-16, "minimum size for element volume");
   params.addParam<Real>("maximum_element_volumes", 1e16, "Maximum size for element volume");
 
   params.addParam<MooseEnum>("examine_element_types",
                              chk_option,
                              "whether to look for multiple element types in the same sub-domain");
   params.addParam<MooseEnum>(
       "examine_element_overlap", chk_option, "whether to find overlapping elements");
   params.addParam<MooseEnum>(
       "examine_nonplanar_sides", chk_option, "whether to check element sides are planar");
   params.addParam<MooseEnum>("examine_non_conformality",
                              chk_option,
                              "whether to examine the conformality of elements in the mesh");
   params.addParam<MooseEnum>("examine_non_matching_edges",
                              chk_option,
                              "Whether to check if there are any intersecting edges");
   params.addParam<Real>("intersection_tol", TOLERANCE, "tolerence for intersecting edges");
   params.addParam<Real>("nonconformal_tol", TOLERANCE, "tolerance for element non-conformality");
   params.addParam<MooseEnum>(
       "search_for_adaptivity_nonconformality",
       chk_option,
       "whether to check for non-conformality arising from adaptive mesh refinement");
   params.addParam<MooseEnum>("check_local_jacobian",
                              chk_option,
                              "whether to check the local Jacobian for negative values");
   params.addParam<unsigned int>(
       "log_length_limit",
       10,
       "How many problematic element/nodes/sides/etc are explicitly reported on by each check");
   return params;
 }

Member Data Documentation

◆ _action_factory

ActionFactory& MooseBaseParameterInterface::_action_factory

protectedinherited

Builds Actions.

Definition at line 179 of file MooseBaseParameterInterface.h.

Referenced by AddActionComponentAction::act(), CreateMeshSetupActionsForComponents::act(), ActionComponent::checkRequiredTasks(), PhysicsBase::checkRequiredTasks(), CommonOutputAction::create(), AddVariableAction::createInitialConditionAction(), DynamicObjectRegistrationAction::DynamicObjectRegistrationAction(), CreateExecutionerAction::setupAutoPreconditioning(), and ReadExecutorParamsAction::setupAutoPreconditioning().

◆ _app

MooseApp& MooseBase::_app

protectedinherited

The MOOSE application this is associated with.

Definition at line 84 of file MooseBase.h.

◆ _check_adaptivity_non_conformality

const MooseEnum MeshDiagnosticsGenerator::_check_adaptivity_non_conformality

private

whether to check for the adaptivity of non-conformal meshes

Definition at line 100 of file MeshDiagnosticsGenerator.h.

Referenced by checkNonConformalMeshFromAdaptivity(), generate(), and MeshDiagnosticsGenerator().

◆ _check_element_overlap

const MooseEnum MeshDiagnosticsGenerator::_check_element_overlap

private

whether to check for intersecting elements

Definition at line 88 of file MeshDiagnosticsGenerator.h.

Referenced by checkElementOverlap(), generate(), and MeshDiagnosticsGenerator().

◆ _check_element_types

const MooseEnum MeshDiagnosticsGenerator::_check_element_types

private

whether to check different element types in the same sub-domain

Definition at line 86 of file MeshDiagnosticsGenerator.h.

Referenced by checkElementTypes(), generate(), and MeshDiagnosticsGenerator().

◆ _check_element_volumes

const MooseEnum MeshDiagnosticsGenerator::_check_element_volumes

private

whether to check element volumes

Definition at line 80 of file MeshDiagnosticsGenerator.h.

Referenced by checkElementVolumes(), generate(), and MeshDiagnosticsGenerator().

◆ _check_local_jacobian

const MooseEnum MeshDiagnosticsGenerator::_check_local_jacobian

private

whether to check for negative jacobians in the domain

Definition at line 102 of file MeshDiagnosticsGenerator.h.

Referenced by checkLocalJacobians(), generate(), and MeshDiagnosticsGenerator().

◆ _check_non_conformal_mesh

const MooseEnum MeshDiagnosticsGenerator::_check_non_conformal_mesh

private

whether to check for non-conformal meshes

Definition at line 92 of file MeshDiagnosticsGenerator.h.

Referenced by checkNonConformalMesh(), generate(), and MeshDiagnosticsGenerator().

◆ _check_non_matching_edges

const MooseEnum MeshDiagnosticsGenerator::_check_non_matching_edges

private

Definition at line 96 of file MeshDiagnosticsGenerator.h.

Referenced by checkNonMatchingEdges(), generate(), and MeshDiagnosticsGenerator().

◆ _check_non_planar_sides

const MooseEnum MeshDiagnosticsGenerator::_check_non_planar_sides

private

whether to check for elements in different planes (non_planar)

Definition at line 90 of file MeshDiagnosticsGenerator.h.

Referenced by checkNonPlanarSides(), generate(), and MeshDiagnosticsGenerator().

◆ _check_sidesets_orientation

const MooseEnum MeshDiagnosticsGenerator::_check_sidesets_orientation

private

whether to check that sidesets are consistently oriented using neighbor subdomains

Definition at line 70 of file MeshDiagnosticsGenerator.h.

Referenced by checkSidesetsOrientation(), generate(), and MeshDiagnosticsGenerator().

◆ _check_watertight_nodesets

const MooseEnum MeshDiagnosticsGenerator::_check_watertight_nodesets

private

whether to check that each external node is assigned to a nodeset

Definition at line 74 of file MeshDiagnosticsGenerator.h.

Referenced by checkWatertightNodesets(), generate(), and MeshDiagnosticsGenerator().

◆ _check_watertight_sidesets

const MooseEnum MeshDiagnosticsGenerator::_check_watertight_sidesets

private

whether to check that each external side is assigned to a sideset

Definition at line 72 of file MeshDiagnosticsGenerator.h.

Referenced by checkWatertightSidesets(), generate(), and MeshDiagnosticsGenerator().

◆ _console

const ConsoleStream ConsoleStreamInterface::_console

inherited

An instance of helper class to write streams to the Console objects.

Definition at line 31 of file ConsoleStreamInterface.h.

◆ _enabled

const bool& MooseObject::_enabled

protectedinherited

Reference to the "enable" InputParameters, used by Controls for toggling on/off MooseObjects.

Definition at line 51 of file MooseObject.h.

Referenced by MooseObject::enabled().

◆ _factory

Factory& MooseBaseParameterInterface::_factory

protectedinherited

The Factory associated with the MooseApp.

Definition at line 176 of file MooseBaseParameterInterface.h.

Referenced by ElementIDOutputAction::act(), AutoCheckpointAction::act(), PartitionerAction::act(), CreateExecutionerAction::act(), CreateProblemAction::act(), CreateProblemDefaultAction::act(), AdaptivityAction::act(), CombineComponentsMeshes::act(), SetupMeshAction::act(), SetupPredictorAction::act(), SetupTimeStepperAction::act(), ComposeTimeStepperAction::act(), SetupDebugAction::act(), SetupPreconditionerAction::act(), SetupResidualDebugAction::act(), CreateDisplacedProblemAction::act(), MaterialDerivativeTestAction::act(), SetAdaptivityOptionsAction::act(), DisplayGhostingAction::act(), AddControlAction::act(), MaterialOutputAction::act(), AddPeriodicBCAction::act(), CommonOutputAction::act(), AddNodalNormalsAction::act(), ComponentMeshTransformHelper::addMeshGenerators(), CylinderComponent::addMeshGenerators(), DiffusionPhysicsBase::addPostprocessors(), CreateDisplacedProblemAction::addProxyRelationshipManagers(), Action::addRelationshipManager(), SampledOutput::cloneMesh(), MooseBaseParameterInterface::connectControllableParams(), DynamicObjectRegistrationAction::DynamicObjectRegistrationAction(), ActionComponent::getFactory(), PhysicsBase::getFactory(), MaterialOutputAction::getParams(), and ProjectedStatefulMaterialStorageAction::processProperty().

◆ _input

std::unique_ptr<MeshBase>& MeshDiagnosticsGenerator::_input

protected

the input mesh to be diagnosed

Definition at line 29 of file MeshDiagnosticsGenerator.h.

Referenced by generate().

◆ _max_volume

const Real MeshDiagnosticsGenerator::_max_volume

private

maximum size for element volume to be counted as a big element

Definition at line 84 of file MeshDiagnosticsGenerator.h.

Referenced by checkElementVolumes().

◆ _mesh

MooseMesh* const MeshGenerator::_mesh

protectedinherited

Pointer to the owning mesh.

Definition at line 388 of file MeshGenerator.h.

Referenced by MeshGenerator::buildDistributedMesh(), MeshGenerator::buildMeshBaseObject(), MeshGenerator::buildReplicatedMesh(), and DistributedRectilinearMeshGenerator::generate().

◆ _min_volume

const Real MeshDiagnosticsGenerator::_min_volume

private

minimum size for element volume to be counted as a tiny element

Definition at line 82 of file MeshDiagnosticsGenerator.h.

Referenced by checkElementVolumes().

◆ _name

const std::string MooseBase::_name

protectedinherited

The name of this class.

Definition at line 90 of file MooseBase.h.

Referenced by AddBCAction::act(), AddConstraintAction::act(), PartitionerAction::act(), AddFVInterfaceKernelAction::act(), AddUserObjectAction::act(), AddFVInitialConditionAction::act(), AddMultiAppAction::act(), AddKernelAction::act(), AddInterfaceKernelAction::act(), AddMeshGeneratorAction::act(), AddVectorPostprocessorAction::act(), AddDGKernelAction::act(), AddMarkerAction::act(), AddNodalKernelAction::act(), AddInitialConditionAction::act(), AddIndicatorAction::act(), AddPostprocessorAction::act(), AddDamperAction::act(), AddMaterialAction::act(), AddScalarKernelAction::act(), AddTransferAction::act(), AddFunctorMaterialAction::act(), AddDiracKernelAction::act(), ReadExecutorParamsAction::act(), AddPositionsAction::act(), AddReporterAction::act(), AddTimesAction::act(), AddFieldSplitAction::act(), AddFVKernelAction::act(), AddFVBCAction::act(), AddFunctionAction::act(), AddConvergenceAction::act(), AddMeshDivisionAction::act(), AddHDGKernelAction::act(), AddTimeStepperAction::act(), AddDistributionAction::act(), SetupPreconditionerAction::act(), SetupTimeIntegratorAction::act(), AddOutputAction::act(), AddLinearFVBCAction::act(), AddLinearFVKernelAction::act(), AddCorrectorAction::act(), AddMeshModifiersAction::act(), AddSamplerAction::act(), AddControlAction::act(), AddMFEMSolverAction::act(), AddMFEMPreconditionerAction::act(), AddMFEMSubMeshAction::act(), AddMFEMFESpaceAction::act(), AddPeriodicBCAction::act(), ADPiecewiseLinearInterpolationMaterial::ADPiecewiseLinearInterpolationMaterial(), BatchMeshGeneratorAction::BatchMeshGeneratorAction(), PiecewiseTabularBase::buildFromFile(), PiecewiseTabularBase::buildFromXY(), PiecewiseLinearBase::buildInterpolation(), CombinerGenerator::CombinerGenerator(), Executor::Executor(), ExtraIDIntegralReporter::ExtraIDIntegralReporter(), QuadraturePointMultiApp::fillPositions(), CentroidMultiApp::fillPositions(), MultiApp::fillPositions(), FunctionDT::FunctionDT(), FillBetweenCurvesGenerator::generate(), FillBetweenPointVectorsGenerator::generate(), FillBetweenSidesetsGenerator::generate(), NearestPointBase< LayeredSideDiffusiveFluxAverage, SideIntegralVariableUserObject >::name(), ParsedFunctorMaterialTempl< is_ad >::ParsedFunctorMaterialTempl(), PiecewiseBilinear::PiecewiseBilinear(), PiecewiseLinearInterpolationMaterial::PiecewiseLinearInterpolationMaterial(), PiecewiseBase::setData(), and AddVariableAction::varName().

◆ _non_conformality_tol

const Real MeshDiagnosticsGenerator::_non_conformality_tol

private

tolerance for detecting when meshes are not conformal

Definition at line 94 of file MeshDiagnosticsGenerator.h.

Referenced by checkElementOverlap(), checkNonConformalMesh(), and checkNonConformalMeshFromAdaptivity().

◆ _non_matching_edge_tol

const Real MeshDiagnosticsGenerator::_non_matching_edge_tol

private

Definition at line 98 of file MeshDiagnosticsGenerator.h.

Referenced by checkNonMatchingEdges().

◆ _num_outputs

const unsigned int MeshDiagnosticsGenerator::_num_outputs

private

number of logs to output at most for each check

Definition at line 104 of file MeshDiagnosticsGenerator.h.

Referenced by checkElementOverlap(), checkElementVolumes(), checkLocalJacobians(), checkNonConformalMesh(), checkNonConformalMeshFromAdaptivity(), checkNonMatchingEdges(), checkNonPlanarSides(), checkSidesetsOrientation(), checkWatertightNodesets(), and checkWatertightSidesets().

◆ _pars

const InputParameters& MooseBaseParameterInterface::_pars

protectedinherited

Parameters of this object, references the InputParameters stored in the InputParametersWarehouse.

Definition at line 173 of file MooseBaseParameterInterface.h.

◆ _type

const std::string MooseBase::_type

protectedinherited

The type of this class.

Definition at line 87 of file MooseBase.h.

Referenced by ExplicitTimeIntegrator::ExplicitTimeIntegrator(), FEProblemSolve::FEProblemSolve(), FillBetweenPointVectorsGenerator::generate(), FillBetweenSidesetsGenerator::generate(), FillBetweenCurvesGenerator::generate(), ExplicitTimeIntegrator::init(), FEProblemBase::init(), MooseStaticCondensationPreconditioner::MooseStaticCondensationPreconditioner(), PhysicsBasedPreconditioner::PhysicsBasedPreconditioner(), FEProblemBase::solverTypeString(), and MooseBase::type().

◆ _watertight_boundaries

std::vector<BoundaryID> MeshDiagnosticsGenerator::_watertight_boundaries

private

IDs of boundaries to be checked in watertight checks.

Definition at line 78 of file MeshDiagnosticsGenerator.h.

Referenced by checkWatertightNodesets(), checkWatertightSidesets(), and generate().

◆ _watertight_boundary_names

std::vector<BoundaryName> MeshDiagnosticsGenerator::_watertight_boundary_names

private

Names of boundaries to be checked in watertight checks.

Definition at line 76 of file MeshDiagnosticsGenerator.h.

Referenced by generate().

◆ data_only_param

const std::string MeshGenerator::data_only_param = "_data_only"

staticinherited

The name of the private parameter for setting data only.

Definition at line 62 of file MeshGenerator.h.

Referenced by MeshGenerator::addMeshSubgenerator(), MeshGeneratorSystem::createAddedMeshGenerators(), and MeshGenerator::validParams().

◆ NAME

constexpr auto MeshMetaDataInterface::NAME = "<empty>"

staticinherited

The data name used when initializing the Restartable interface for non-MeshGenerator objects.

Definition at line 33 of file MeshMetaDataInterface.h.

◆ SYSTEM

constexpr auto MeshMetaDataInterface::SYSTEM = "MeshMetaData"

staticinherited

The system name used when initializing the Restartable interface.

Definition at line 30 of file MeshMetaDataInterface.h.

Referenced by MeshMetaDataInterface::meshPropertyName().

The documentation for this class was generated from the following files:

include/meshgenerators/MeshDiagnosticsGenerator.h
src/meshgenerators/MeshDiagnosticsGenerator.C

Public Types

Public Member Functions

Static Public Member Functions

Public Attributes

Static Public Attributes

Protected Member Functions

Static Protected Member Functions

Protected Attributes

Private Member Functions

Private Attributes

Detailed Description

Member Typedef Documentation

◆ DataFileParameterType

Constructor & Destructor Documentation

◆ MeshDiagnosticsGenerator()

Member Function Documentation

◆ addChildMeshGenerator()

◆ addMeshSubgenerator() [1/2]

◆ addMeshSubgenerator() [2/2]

◆ addParentMeshGenerator()

◆ buildDistributedMesh()

◆ buildMeshBaseObject()

◆ buildReplicatedMesh()

◆ callMooseError()

◆ checkElementOverlap()

◆ checkElementTypes()

◆ checkElementVolumes()

◆ checkLocalJacobians()

◆ checkNonConformalMesh()

◆ checkNonConformalMeshFromAdaptivity()

◆ checkNonMatchingEdges()

◆ checkNonPlanarSides()

◆ checkSidesetsOrientation()

◆ checkWatertightNodesets()

◆ checkWatertightSidesets()

◆ connectControllableParams()

◆ copyMeshProperty() [1/2]

◆ copyMeshProperty() [2/2]

◆ declareMeshesForSub()

◆ declareMeshesForSubByName()

◆ declareMeshForSub()

◆ declareMeshForSubByName()

◆ declareMeshProperty() [1/2]

◆ declareMeshProperty() [2/2]

◆ declareNullMeshName()

◆ diagnosticsLog()

◆ enabled()

◆ errorPrefix()

◆ findBoundaryOverlap()

◆ generate()

◆ generateData()

◆ generateInternal()

◆ getCheckedPointerParam()

◆ getChildMeshGenerators()

◆ getDataFileName()

◆ getDataFileNameByName()

◆ getDataFilePath()

◆ getMesh()

◆ getMeshByName()

◆ getMeshes()

◆ getMeshesByName()

◆ getMeshProperty() [1/2]

◆ getMeshProperty() [2/2]

◆ getMooseApp()

◆ getParam() [1/2]

◆ getParam() [2/2]

◆ getParentMeshGenerators()

◆ getRenamedParam()

◆ getRequestedMeshGenerators()

◆ getRequestedMeshGeneratorsForSub()

◆ getSavedMeshName()

◆ getSharedPtr() [1/2]

◆ getSharedPtr() [2/2]

◆ getSubMeshGenerators()

◆ hasGenerateData() [1/2]

◆ hasGenerateData() [2/2]

◆ hasMeshProperty() [1/4]

◆ hasMeshProperty() [2/4]

◆ hasMeshProperty() [3/4]

◆ hasMeshProperty() [4/4]