libMesh
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libMesh::EigenSparseVector< T > Class Template Reference

This class provides a nice interface to the Eigen C++-based data structures for serial vectors. More...

#include <eigen_sparse_matrix.h>

Inheritance diagram for libMesh::EigenSparseVector< T >:
[legend]

Public Types

typedef EigenSV DataType
 Convenient typedefs. More...
 

Public Member Functions

 EigenSparseVector (const Parallel::Communicator &comm_in, const ParallelType=AUTOMATIC)
 Dummy-Constructor. More...
 
 EigenSparseVector (const Parallel::Communicator &comm_in, const numeric_index_type n, const ParallelType=AUTOMATIC)
 Constructor. More...
 
 EigenSparseVector (const Parallel::Communicator &comm_in, const numeric_index_type n, const numeric_index_type n_local, const ParallelType=AUTOMATIC)
 Constructor. More...
 
 EigenSparseVector (const Parallel::Communicator &comm_in, const numeric_index_type N, const numeric_index_type n_local, const std::vector< numeric_index_type > &ghost, const ParallelType=AUTOMATIC)
 Constructor. More...
 
EigenSparseVector< T > & operator= (const EigenSparseVector< T > &v)
 Copy assignment operator. More...
 
 EigenSparseVector (EigenSparseVector &&)=default
 The 5 special functions can be defaulted for this class, as it does not manage any memory itself. More...
 
 EigenSparseVector (const EigenSparseVector &)=default
 
EigenSparseVector & operator= (EigenSparseVector &&)=default
 
virtual ~EigenSparseVector ()=default
 
virtual void close () override
 Calls the NumericVector's internal assembly routines, ensuring that the values are consistent across processors. More...
 
virtual void clear () override
 Restores the NumericVector<T> to a pristine state. More...
 
virtual void zero () override
 Set all entries to zero. More...
 
virtual std::unique_ptr< NumericVector< T > > zero_clone () const override
 
virtual std::unique_ptr< NumericVector< T > > clone () const override
 
virtual void init (const numeric_index_type N, const numeric_index_type n_local, const bool fast=false, const ParallelType ptype=AUTOMATIC) override
 Change the dimension of the vector to n. More...
 
virtual void init (const numeric_index_type N, const bool fast=false, const ParallelType ptype=AUTOMATIC) override
 Call init() with n_local = N. More...
 
virtual void init (const numeric_index_type N, const numeric_index_type n_local, const std::vector< numeric_index_type > &ghost, const bool fast=false, const ParallelType=AUTOMATIC) override
 Create a vector that holds tha local indices plus those specified in the ghost argument. More...
 
virtual void init (const NumericVector< T > &other, const bool fast=false) override
 Creates a vector that has the same dimension and storage type as other, including ghost dofs. More...
 
virtual NumericVector< T > & operator= (const T s) override
 Sets all entries of the vector to the value s. More...
 
virtual NumericVector< T > & operator= (const NumericVector< T > &v) override
 This looks like a copy assignment operator, but note that, unlike normal copy assignment operators, it is pure virtual. More...
 
virtual NumericVector< T > & operator= (const std::vector< T > &v) override
 Sets (*this)(i) = v(i) for each entry of the vector. More...
 
virtual Real min () const override
 
virtual Real max () const override
 
virtual T sum () const override
 
virtual Real l1_norm () const override
 
virtual Real l2_norm () const override
 
virtual Real linfty_norm () const override
 
virtual numeric_index_type size () const override
 
virtual numeric_index_type local_size () const override
 
virtual numeric_index_type first_local_index () const override
 
virtual numeric_index_type last_local_index () const override
 
virtual T operator() (const numeric_index_type i) const override
 
virtual NumericVector< T > & operator+= (const NumericVector< T > &v) override
 Adds v to *this, $ \vec{u} \leftarrow \vec{u} + \vec{v} $. More...
 
virtual NumericVector< T > & operator-= (const NumericVector< T > &v) override
 Subtracts v from *this, $ \vec{u} \leftarrow \vec{u} - \vec{v} $. More...
 
virtual NumericVector< T > & operator/= (const NumericVector< T > &v_in) override
 Computes the pointwise division of this vector's entries by another's, $ u_i \leftarrow \frac{u_i}{v_i} \, \forall i$. More...
 
virtual void reciprocal () override
 Computes the pointwise reciprocal, $ u_i \leftarrow \frac{1}{u_i} \, \forall i$. More...
 
virtual void conjugate () override
 Negates the imaginary component of each entry in the vector. More...
 
virtual void set (const numeric_index_type i, const T value) override
 Sets v(i) = value. More...
 
virtual void add (const numeric_index_type i, const T value) override
 Adds value to each entry of the vector. More...
 
virtual void add (const T s) override
 Adds s to each entry of the vector, $ u_i \leftarrow u_i + s $. More...
 
virtual void add (const NumericVector< T > &v) override
 Adds v to this, $ \vec{u} \leftarrow \vec{u} + \vec{v} $. More...
 
virtual void add (const T a, const NumericVector< T > &v) override
 Vector addition with a scalar multiple, $ \vec{u} \leftarrow \vec{u} + a\vec{v} $. More...
 
virtual void add_vector (const NumericVector< T > &v, const SparseMatrix< T > &A) override
 Computes $ \vec{u} \leftarrow \vec{u} + A \vec{v} $, i.e. More...
 
virtual void add_vector_transpose (const NumericVector< T > &v, const SparseMatrix< T > &A) override
 Computes $ \vec{u} \leftarrow \vec{u} + A^T \vec{v} $, i.e. More...
 
virtual void scale (const T factor) override
 Scale each element of the vector by the given factor. More...
 
virtual void abs () override
 Sets $ u_i \leftarrow |u_i| $ for each entry in the vector. More...
 
virtual T dot (const NumericVector< T > &v) const override
 
virtual void localize (std::vector< T > &v_local) const override
 Creates a copy of the global vector in the local vector v_local. More...
 
virtual void localize (NumericVector< T > &v_local) const override
 Same, but fills a NumericVector<T> instead of a std::vector. More...
 
virtual void localize (NumericVector< T > &v_local, const std::vector< numeric_index_type > &send_list) const override
 Creates a local vector v_local containing only information relevant to this processor, as defined by the send_list. More...
 
virtual void localize (std::vector< T > &v_local, const std::vector< numeric_index_type > &indices) const override
 
Fill in the local std::vector "v_local" with the global indices given in "indices". More...
 
virtual void localize (const numeric_index_type first_local_idx, const numeric_index_type last_local_idx, const std::vector< numeric_index_type > &send_list) override
 Updates a local vector with selected values from neighboring processors, as defined by send_list. More...
 
virtual void localize_to_one (std::vector< T > &v_local, const processor_id_type proc_id=0) const override
 Creates a local copy of the global vector in v_local only on processor proc_id. More...
 
virtual void pointwise_mult (const NumericVector< T > &vec1, const NumericVector< T > &vec2) override
 Computes $ u_i \leftarrow u_i v_i $ (summation not implied) i.e. More...
 
virtual void swap (NumericVector< T > &v) override
 Swaps the contents of this with v. More...
 
DataType & vec ()
 References to the underlying Eigen data types. More...
 
const DataType & vec () const
 
virtual bool initialized () const
 
ParallelType type () const
 
ParallelType & type ()
 
virtual bool closed () const
 
virtual Real subset_l1_norm (const std::set< numeric_index_type > &indices) const
 
virtual Real subset_l2_norm (const std::set< numeric_index_type > &indices) const
 
virtual Real subset_linfty_norm (const std::set< numeric_index_type > &indices) const
 
virtual T el (const numeric_index_type i) const
 
virtual void get (const std::vector< numeric_index_type > &index, T *values) const
 Access multiple components at once. More...
 
void get (const std::vector< numeric_index_type > &index, std::vector< T > &values) const
 Access multiple components at once. More...
 
NumericVector< T > & operator*= (const T a)
 Scales the vector by a, $ \vec{u} \leftarrow a\vec{u} $. More...
 
NumericVector< T > & operator/= (const T a)
 Scales the vector by 1/a, $ \vec{u} \leftarrow \frac{1}{a}\vec{u} $. More...
 
virtual void add_vector (const T *v, const std::vector< numeric_index_type > &dof_indices)
 Computes $ \vec{u} \leftarrow \vec{u} + \vec{v} $, where v is a pointer and each dof_indices[i] specifies where to add value v[i]. More...
 
void add_vector (const std::vector< T > &v, const std::vector< numeric_index_type > &dof_indices)
 Computes $ \vec{u} \leftarrow \vec{u} + \vec{v} $, where v is a std::vector and each dof_indices[i] specifies where to add value v[i]. More...
 
virtual void add_vector (const NumericVector< T > &v, const std::vector< numeric_index_type > &dof_indices)
 Computes $ \vec{u} \leftarrow \vec{u} + \vec{v} $, where v is a NumericVector and each dof_indices[i] specifies where to add value v(i). More...
 
void add_vector (const DenseVector< T > &v, const std::vector< numeric_index_type > &dof_indices)
 Computes $ \vec{u} \leftarrow \vec{u} + \vec{v} $, where v is a DenseVector and each dof_indices[i] specifies where to add value v(i). More...
 
void add_vector (const NumericVector< T > &v, const ShellMatrix< T > &A)
 Computes $ \vec{u} \leftarrow \vec{u} + A \vec{v} $, i.e. More...
 
virtual void insert (const T *v, const std::vector< numeric_index_type > &dof_indices)
 Inserts the entries of v in *this at the locations specified by v. More...
 
void insert (const std::vector< T > &v, const std::vector< numeric_index_type > &dof_indices)
 Inserts the entries of v in *this at the locations specified by v. More...
 
virtual void insert (const NumericVector< T > &v, const std::vector< numeric_index_type > &dof_indices)
 Inserts the entries of v in *this at the locations specified by v. More...
 
void insert (const DenseVector< T > &v, const std::vector< numeric_index_type > &dof_indices)
 Inserts the entries of v in *this at the locations specified by v. More...
 
void insert (const DenseSubVector< T > &v, const std::vector< numeric_index_type > &dof_indices)
 Inserts the entries of v in *this at the locations specified by v. More...
 
virtual int compare (const NumericVector< T > &other_vector, const Real threshold=TOLERANCE) const
 
virtual int local_relative_compare (const NumericVector< T > &other_vector, const Real threshold=TOLERANCE) const
 
virtual int global_relative_compare (const NumericVector< T > &other_vector, const Real threshold=TOLERANCE) const
 
virtual void print (std::ostream &os=libMesh::out) const
 Prints the local contents of the vector, by default to libMesh::out. More...
 
template<>
void print (std::ostream &os) const
 
virtual void print_global (std::ostream &os=libMesh::out) const
 Prints the global contents of the vector, by default to libMesh::out. More...
 
template<>
void print_global (std::ostream &os) const
 
virtual void print_matlab (const std::string &="") const
 Print the contents of the vector in Matlab's sparse matrix format. More...
 
virtual void create_subvector (NumericVector< T > &, const std::vector< numeric_index_type > &) const
 Fills in subvector from this vector using the indices in rows. More...
 
const Parallel::Communicator & comm () const
 
processor_id_type n_processors () const
 
processor_id_type processor_id () const
 

Static Public Member Functions

static std::unique_ptr< NumericVector< T > > build (const Parallel::Communicator &comm, const SolverPackage solver_package=libMesh::default_solver_package())
 Builds a NumericVector on the processors in communicator comm using the linear solver package specified by solver_package. More...
 
static std::string get_info ()
 Gets a string containing the reference information. More...
 
static void print_info (std::ostream &out=libMesh::out)
 Prints the reference information, by default to libMesh::out. More...
 
static unsigned int n_objects ()
 Prints the number of outstanding (created, but not yet destroyed) objects. More...
 
static void enable_print_counter_info ()
 Methods to enable/disable the reference counter output from print_info() More...
 
static void disable_print_counter_info ()
 

Protected Types

typedef std::map< std::string, std::pair< unsigned int, unsigned int > > Counts
 Data structure to log the information. More...
 

Protected Member Functions

void increment_constructor_count (const std::string &name)
 Increments the construction counter. More...
 
void increment_destructor_count (const std::string &name)
 Increments the destruction counter. More...
 

Protected Attributes

bool _is_closed
 Flag which tracks whether the vector's values are consistent on all processors after insertion or addition of values has occurred on some or all processors. More...
 
bool _is_initialized
 true once init() has been called. More...
 
ParallelType _type
 Type of vector. More...
 
const Parallel::Communicator & _communicator
 

Static Protected Attributes

static Counts _counts
 Actually holds the data. More...
 
static Threads::atomic< unsigned int > _n_objects
 The number of objects. More...
 
static Threads::spin_mutex _mutex
 Mutual exclusion object to enable thread-safe reference counting. More...
 
static bool _enable_print_counter
 Flag to control whether reference count information is printed when print_info is called. More...
 

Private Attributes

DataType _vec
 Actual Eigen::SparseVector<> we are wrapping. More...
 

Friends

class EigenSparseMatrix< T >
 Make other Eigen datatypes friends. More...
 
class EigenSparseLinearSolver< T >
 

Detailed Description

template<typename T>
class libMesh::EigenSparseVector< T >

This class provides a nice interface to the Eigen C++-based data structures for serial vectors.

All overridden virtual functions are documented in numeric_vector.h.

Author
Benjamin S. Kirk
Date
2002

Definition at line 42 of file eigen_sparse_matrix.h.

Member Typedef Documentation

◆ Counts

typedef std::map<std::string, std::pair<unsigned int, unsigned int> > libMesh::ReferenceCounter::Counts
protectedinherited

Data structure to log the information.

The log is identified by the class name.

Definition at line 117 of file reference_counter.h.

◆ DataType

template<typename T >
typedef EigenSV libMesh::EigenSparseVector< T >::DataType

Convenient typedefs.

Definition at line 109 of file eigen_sparse_vector.h.

Constructor & Destructor Documentation

◆ EigenSparseVector() [1/6]

template<typename T >
libMesh::EigenSparseVector< T >::EigenSparseVector ( const Parallel::Communicator &  comm_in,
const ParallelType  ptype = AUTOMATIC 
)
explicit

Dummy-Constructor.

Dimension=0

Definition at line 255 of file eigen_sparse_vector.h.

References libMesh::NumericVector< T >::_type.

257  : NumericVector<T>(comm_in, ptype)
258 {
259  this->_type = ptype;
260 }
libMesh::NumericVector::_type
ParallelType _type
Type of vector.
Definition: numeric_vector.h:722

◆ EigenSparseVector() [2/6]

template<typename T >
libMesh::EigenSparseVector< T >::EigenSparseVector ( const Parallel::Communicator &  comm_in,
const numeric_index_type  n,
const ParallelType  ptype = AUTOMATIC 
)
explicit

Constructor.

Set dimension to n and initialize all elements with zero.

Definition at line 266 of file eigen_sparse_vector.h.

References libMesh::EigenSparseVector< T >::init().

269  : NumericVector<T>(comm_in, ptype)
270 {
271  this->init(n, n, false, ptype);
272 }
libMesh::EigenSparseVector::init
virtual void init(const numeric_index_type N, const numeric_index_type n_local, const bool fast=false, const ParallelType ptype=AUTOMATIC) override
Change the dimension of the vector to n.
Definition: eigen_sparse_vector.h:305

◆ EigenSparseVector() [3/6]

template<typename T >
libMesh::EigenSparseVector< T >::EigenSparseVector ( const Parallel::Communicator &  comm_in,
const numeric_index_type  n,
const numeric_index_type  n_local,
const ParallelType  ptype = AUTOMATIC 
)

Constructor.

Set local dimension to n_local, the global dimension to n, and initialize all elements with zero.

Definition at line 278 of file eigen_sparse_vector.h.

References libMesh::EigenSparseVector< T >::init().

282  : NumericVector<T>(comm_in, ptype)
283 {
284  this->init(n, n_local, false, ptype);
285 }
libMesh::EigenSparseVector::init
virtual void init(const numeric_index_type N, const numeric_index_type n_local, const bool fast=false, const ParallelType ptype=AUTOMATIC) override
Change the dimension of the vector to n.
Definition: eigen_sparse_vector.h:305

◆ EigenSparseVector() [4/6]

template<typename T >
libMesh::EigenSparseVector< T >::EigenSparseVector ( const Parallel::Communicator &  comm_in,
const numeric_index_type  N,
const numeric_index_type  n_local,
const std::vector< numeric_index_type > &  ghost,
const ParallelType  ptype = AUTOMATIC 
)

Constructor.

Set local dimension to n_local, the global dimension to n, but additionally reserve memory for the indices specified by the ghost argument.

Definition at line 291 of file eigen_sparse_vector.h.

References libMesh::EigenSparseVector< T >::init().

296  : NumericVector<T>(comm_in, ptype)
297 {
298  this->init(N, n_local, ghost, false, ptype);
299 }
libMesh::EigenSparseVector::init
virtual void init(const numeric_index_type N, const numeric_index_type n_local, const bool fast=false, const ParallelType ptype=AUTOMATIC) override
Change the dimension of the vector to n.
Definition: eigen_sparse_vector.h:305

◆ EigenSparseVector() [5/6]

template<typename T >
libMesh::EigenSparseVector< T >::EigenSparseVector ( EigenSparseVector< T > &&  )
default

The 5 special functions can be defaulted for this class, as it does not manage any memory itself.

◆ EigenSparseVector() [6/6]

template<typename T >
libMesh::EigenSparseVector< T >::EigenSparseVector ( const EigenSparseVector< T > &  )
default

◆ ~EigenSparseVector()

template<typename T >
virtual libMesh::EigenSparseVector< T >::~EigenSparseVector ( )
virtualdefault

Member Function Documentation

◆ abs()

template<typename T >
virtual void libMesh::EigenSparseVector< T >::abs ( )
overridevirtual

Sets $ u_i \leftarrow |u_i| $ for each entry in the vector.

Implements libMesh::NumericVector< T >.

◆ add() [1/4]

template<typename T >
void libMesh::EigenSparseVector< T >::add ( const numeric_index_type  i,
const T  value 
)
overridevirtual

Adds value to each entry of the vector.

Implements libMesh::NumericVector< T >.

Definition at line 495 of file eigen_sparse_vector.h.

References libMesh::initialized().

496 {
497  libmesh_assert (this->initialized());
498  libmesh_assert_less (i, this->size());
499 
500  _vec[static_cast<eigen_idx_type>(i)] += value;
501 
502 #ifndef NDEBUG
503  this->_is_closed = false;
504 #endif
505 }
libMesh::EigenSparseVector::_vec
DataType _vec
Actual Eigen::SparseVector<> we are wrapping.
Definition: eigen_sparse_vector.h:240
libMesh::NumericVector::initialized
virtual bool initialized() const
Definition: numeric_vector.h:149
libMesh::eigen_idx_type
int32_t eigen_idx_type
Definition: eigen_core_support.h:66
libMesh::EigenSparseVector::size
virtual numeric_index_type size() const override
Definition: eigen_sparse_vector.h:435
libMesh::NumericVector::_is_closed
bool _is_closed
Flag which tracks whether the vector&#39;s values are consistent on all processors after insertion or add...
Definition: numeric_vector.h:712

◆ add() [2/4]

template<typename T >
virtual void libMesh::EigenSparseVector< T >::add ( const T  s)
overridevirtual

Adds s to each entry of the vector, $ u_i \leftarrow u_i + s $.

Implements libMesh::NumericVector< T >.

◆ add() [3/4]

template<typename T >
virtual void libMesh::EigenSparseVector< T >::add ( const NumericVector< T > &  v)
overridevirtual

Adds v to this, $ \vec{u} \leftarrow \vec{u} + \vec{v} $.

Equivalent to calling operator+=().

Implements libMesh::NumericVector< T >.

◆ add() [4/4]

template<typename T >
virtual void libMesh::EigenSparseVector< T >::add ( const T  a,
const NumericVector< T > &  v 
)
overridevirtual

Vector addition with a scalar multiple, $ \vec{u} \leftarrow \vec{u} + a\vec{v} $.

Equivalent to calling operator+=().

Implements libMesh::NumericVector< T >.

◆ add_vector() [1/6]

template<typename T >
virtual void libMesh::EigenSparseVector< T >::add_vector ( const NumericVector< T > &  v,
const SparseMatrix< T > &  A 
)
overridevirtual

Computes $ \vec{u} \leftarrow \vec{u} + A \vec{v} $, i.e.

adds the product of a SparseMatrix A and a NumericVector v to this.

Implements libMesh::NumericVector< T >.

◆ add_vector() [2/6]

template<typename T>
virtual void libMesh::NumericVector< T >::add_vector ( const T *  v,
const std::vector< numeric_index_type > &  dof_indices 
)
virtualinherited

Computes $ \vec{u} \leftarrow \vec{u} + \vec{v} $, where v is a pointer and each dof_indices[i] specifies where to add value v[i].

This should be overridden in subclasses for efficiency.

Reimplemented in libMesh::PetscVector< T >, libMesh::PetscVector< libMesh::Real >, and libMesh::EpetraVector< T >.

◆ add_vector() [3/6]

template<typename T>
void libMesh::NumericVector< T >::add_vector ( const std::vector< T > &  v,
const std::vector< numeric_index_type > &  dof_indices 
)
inherited

Computes $ \vec{u} \leftarrow \vec{u} + \vec{v} $, where v is a std::vector and each dof_indices[i] specifies where to add value v[i].

Definition at line 835 of file numeric_vector.h.

837 {
838  libmesh_assert(v.size() == dof_indices.size());
839  if (!v.empty())
840  this->add_vector(v.data(), dof_indices);
841 }
libMesh::NumericVector::add_vector
virtual void add_vector(const T *v, const std::vector< numeric_index_type > &dof_indices)
Computes , where v is a pointer and each dof_indices[i] specifies where to add value v[i]...

◆ add_vector() [4/6]

template<typename T>
virtual void libMesh::NumericVector< T >::add_vector ( const NumericVector< T > &  v,
const std::vector< numeric_index_type > &  dof_indices 
)
virtualinherited

Computes $ \vec{u} \leftarrow \vec{u} + \vec{v} $, where v is a NumericVector and each dof_indices[i] specifies where to add value v(i).

◆ add_vector() [5/6]

template<typename T>
void libMesh::NumericVector< T >::add_vector ( const DenseVector< T > &  v,
const std::vector< numeric_index_type > &  dof_indices 
)
inherited

Computes $ \vec{u} \leftarrow \vec{u} + \vec{v} $, where v is a DenseVector and each dof_indices[i] specifies where to add value v(i).

Definition at line 847 of file numeric_vector.h.

849 {
850  libmesh_assert(v.size() == dof_indices.size());
851  if (!v.empty())
852  this->add_vector(&v(0), dof_indices);
853 }
libMesh::NumericVector::add_vector
virtual void add_vector(const T *v, const std::vector< numeric_index_type > &dof_indices)
Computes , where v is a pointer and each dof_indices[i] specifies where to add value v[i]...

◆ add_vector() [6/6]

template<typename T>
void libMesh::NumericVector< T >::add_vector ( const NumericVector< T > &  v,
const ShellMatrix< T > &  A 
)
inherited

Computes $ \vec{u} \leftarrow \vec{u} + A \vec{v} $, i.e.

adds the product of a ShellMatrix A and a NumericVector v to this.

◆ add_vector_transpose()

template<typename T >
virtual void libMesh::EigenSparseVector< T >::add_vector_transpose ( const NumericVector< T > &  v,
const SparseMatrix< T > &  A 
)
overridevirtual

Computes $ \vec{u} \leftarrow \vec{u} + A^T \vec{v} $, i.e.

adds the product of the transpose of a SparseMatrix A and a NumericVector v to this.

Implements libMesh::NumericVector< T >.

◆ build()

template<typename T>
static std::unique_ptr<NumericVector<T> > libMesh::NumericVector< T >::build ( const Parallel::Communicator &  comm,
const SolverPackage  solver_package = libMesh::default_solver_package() 
)
staticinherited

Builds a NumericVector on the processors in communicator comm using the linear solver package specified by solver_package.

◆ clear()

template<typename T >
void libMesh::EigenSparseVector< T >::clear ( )
overridevirtual

Restores the NumericVector<T> to a pristine state.

Reimplemented from libMesh::NumericVector< T >.

Definition at line 387 of file eigen_sparse_vector.h.

388 {
389  _vec.resize(0);
390 
391  this->_is_initialized = false;
392 #ifndef NDEBUG
393  this->_is_closed = false;
394 #endif
395 }
libMesh::EigenSparseVector::_vec
DataType _vec
Actual Eigen::SparseVector<> we are wrapping.
Definition: eigen_sparse_vector.h:240
libMesh::NumericVector::_is_initialized
bool _is_initialized
true once init() has been called.
Definition: numeric_vector.h:717
libMesh::NumericVector::_is_closed
bool _is_closed
Flag which tracks whether the vector&#39;s values are consistent on all processors after insertion or add...
Definition: numeric_vector.h:712

◆ clone()

template<typename T >
std::unique_ptr< NumericVector< T > > libMesh::EigenSparseVector< T >::clone ( ) const
overridevirtual
Returns
A copy of this vector wrapped in a smart pointer.
Note
This must be overridden in the derived classes.

Implements libMesh::NumericVector< T >.

Definition at line 423 of file eigen_sparse_vector.h.

References libMesh::NumericVector< T >::init().

424 {
425  NumericVector<T> * cloned_vector = new EigenSparseVector<T>(this->comm());
426  cloned_vector->init(*this, true);
427  *cloned_vector = *this;
428  return std::unique_ptr<NumericVector<T>>(cloned_vector);
429 }
libMesh::ParallelObject::comm
const Parallel::Communicator & comm() const
Definition: parallel_object.h:89

◆ close()

template<typename T >
void libMesh::EigenSparseVector< T >::close ( )
overridevirtual

Calls the NumericVector's internal assembly routines, ensuring that the values are consistent across processors.

Implements libMesh::NumericVector< T >.

Definition at line 374 of file eigen_sparse_vector.h.

References libMesh::initialized().

375 {
376  libmesh_assert (this->initialized());
377 
378 #ifndef NDEBUG
379  this->_is_closed = true;
380 #endif
381 }
libMesh::NumericVector::initialized
virtual bool initialized() const
Definition: numeric_vector.h:149
libMesh::NumericVector::_is_closed
bool _is_closed
Flag which tracks whether the vector&#39;s values are consistent on all processors after insertion or add...
Definition: numeric_vector.h:712

◆ closed()

template<typename T>
virtual bool libMesh::NumericVector< T >::closed ( ) const
virtualinherited
Returns
true if the vector is closed and ready for computation, false otherwise.

Definition at line 165 of file numeric_vector.h.

165 { return _is_closed; }
libMesh::NumericVector::_is_closed
bool _is_closed
Flag which tracks whether the vector&#39;s values are consistent on all processors after insertion or add...
Definition: numeric_vector.h:712

◆ comm()

const Parallel::Communicator& libMesh::ParallelObject::comm ( ) const
inherited
Returns
A reference to the Parallel::Communicator object used by this mesh.

Definition at line 89 of file parallel_object.h.

References libMesh::ParallelObject::_communicator.

Referenced by libMesh::EpetraVector< T >::EpetraVector(), libMesh::Parallel::sync_element_data_by_parent_id(), libMesh::Parallel::sync_node_data_by_element_id(), and libMesh::Parallel::sync_node_data_by_element_id_once().

90  { return _communicator; }
libMesh::ParallelObject::_communicator
const Parallel::Communicator & _communicator
Definition: parallel_object.h:107

◆ compare()

template<typename T>
virtual int libMesh::NumericVector< T >::compare ( const NumericVector< T > &  other_vector,
const Real  threshold = TOLERANCE 
) const
virtualinherited
Returns
-1 when this is equivalent to other_vector (up to the given threshold), or the first index where abs(a[i]-b[i]) exceeds the threshold.

◆ conjugate()

template<typename T >
virtual void libMesh::EigenSparseVector< T >::conjugate ( )
overridevirtual

Negates the imaginary component of each entry in the vector.

Implements libMesh::NumericVector< T >.

◆ create_subvector()

template<typename T>
virtual void libMesh::NumericVector< T >::create_subvector ( NumericVector< T > &  ,
const std::vector< numeric_index_type > &   
) const
virtualinherited

Fills in subvector from this vector using the indices in rows.

Similar to the create_submatrix() routine for the SparseMatrix class, it is currently only implemented for PetscVectors.

Reimplemented in libMesh::PetscVector< T >, libMesh::PetscVector< libMesh::Real >, and libMesh::EpetraVector< T >.

Definition at line 692 of file numeric_vector.h.

694  {
695  libmesh_not_implemented();
696  }

◆ disable_print_counter_info()

static void libMesh::ReferenceCounter::disable_print_counter_info ( )
staticinherited

◆ dot()

template<typename T >
virtual T libMesh::EigenSparseVector< T >::dot ( const NumericVector< T > &  v) const
overridevirtual
Returns
$ \vec{u} \cdot \vec{v} $, the dot product of (*this) with the vector v.

Uses the complex-conjugate of v in the complex-valued case.

Implements libMesh::NumericVector< T >.

◆ el()

template<typename T>
virtual T libMesh::NumericVector< T >::el ( const numeric_index_type  i) const
virtualinherited
Returns
(*this)(i).

Definition at line 346 of file numeric_vector.h.

346 { return (*this)(i); }

◆ enable_print_counter_info()

static void libMesh::ReferenceCounter::enable_print_counter_info ( )
staticinherited

Methods to enable/disable the reference counter output from print_info()

◆ first_local_index()

template<typename T >
numeric_index_type libMesh::EigenSparseVector< T >::first_local_index ( ) const
overridevirtual
Returns
The index of the first vector element actually stored on this processor.
Note
The minimum for this index is 0.

Implements libMesh::NumericVector< T >.

Definition at line 457 of file eigen_sparse_vector.h.

References libMesh::initialized().

458 {
459  libmesh_assert (this->initialized());
460 
461  return 0;
462 }
libMesh::NumericVector::initialized
virtual bool initialized() const
Definition: numeric_vector.h:149

◆ get() [1/2]

template<typename T>
void libMesh::NumericVector< T >::get ( const std::vector< numeric_index_type > &  index,
T *  values 
) const
virtualinherited

Access multiple components at once.

values will not be reallocated; it should already have enough space. The default implementation calls operator() for each index, but some implementations may supply faster methods here.

Reimplemented in libMesh::PetscVector< T >, and libMesh::PetscVector< libMesh::Real >.

Definition at line 806 of file numeric_vector.h.

808 {
809  const std::size_t num = index.size();
810  for (std::size_t i=0; i<num; i++)
811  {
812  values[i] = (*this)(index[i]);
813  }
814 }

◆ get() [2/2]

template<typename T>
void libMesh::NumericVector< T >::get ( const std::vector< numeric_index_type > &  index,
std::vector< T > &  values 
) const
inherited

Access multiple components at once.

values will be resized, if necessary, and filled. The default implementation calls operator() for each index, but some implementations may supply faster methods here.

Definition at line 820 of file numeric_vector.h.

822 {
823  const std::size_t num = index.size();
824  values.resize(num);
825  if (!num)
826  return;
827 
828  this->get(index, values.data());
829 }

◆ get_info()

static std::string libMesh::ReferenceCounter::get_info ( )
staticinherited

Gets a string containing the reference information.

◆ global_relative_compare()

template<typename T>
virtual int libMesh::NumericVector< T >::global_relative_compare ( const NumericVector< T > &  other_vector,
const Real  threshold = TOLERANCE 
) const
virtualinherited
Returns
-1 when this is equivalent to other_vector (up to the given global relative threshold), or the first index where abs(a[i]-b[i])/max_j(a[j],b[j]) exceeds the threshold.

◆ increment_constructor_count()

void libMesh::ReferenceCounter::increment_constructor_count ( const std::string &  name)
protectedinherited

Increments the construction counter.

Should be called in the constructor of any derived class that will be reference counted.

Definition at line 181 of file reference_counter.h.

References libMesh::ReferenceCounter::_counts, libMesh::Quality::name(), and libMesh::Threads::spin_mtx.

Referenced by libMesh::ReferenceCountedObject< RBParametrized >::ReferenceCountedObject().

182 {
183  Threads::spin_mutex::scoped_lock lock(Threads::spin_mtx);
184  std::pair<unsigned int, unsigned int> & p = _counts[name];
185 
186  p.first++;
187 }
libMesh::Quality::name
std::string name(const ElemQuality q)
libMesh::ReferenceCounter::_counts
static Counts _counts
Actually holds the data.
Definition: reference_counter.h:122
libMesh::Threads::spin_mtx
spin_mutex spin_mtx
A convenient spin mutex object which can be used for obtaining locks.

◆ increment_destructor_count()

void libMesh::ReferenceCounter::increment_destructor_count ( const std::string &  name)
protectedinherited

Increments the destruction counter.

Should be called in the destructor of any derived class that will be reference counted.

Definition at line 194 of file reference_counter.h.

References libMesh::ReferenceCounter::_counts, libMesh::Quality::name(), and libMesh::Threads::spin_mtx.

Referenced by libMesh::ReferenceCountedObject< RBParametrized >::~ReferenceCountedObject().

195 {
196  Threads::spin_mutex::scoped_lock lock(Threads::spin_mtx);
197  std::pair<unsigned int, unsigned int> & p = _counts[name];
198 
199  p.second++;
200 }
libMesh::Quality::name
std::string name(const ElemQuality q)
libMesh::ReferenceCounter::_counts
static Counts _counts
Actually holds the data.
Definition: reference_counter.h:122
libMesh::Threads::spin_mtx
spin_mutex spin_mtx
A convenient spin mutex object which can be used for obtaining locks.

◆ init() [1/4]

template<typename T >
void libMesh::EigenSparseVector< T >::init ( const numeric_index_type  n,
const numeric_index_type  n_local,
const bool  fast = false,
const ParallelType  ptype = AUTOMATIC 
)
overridevirtual

Change the dimension of the vector to n.

The reserved memory for this vector remains unchanged if possible. If n==0, all memory is freed. Therefore, if you want to resize the vector and release the memory not needed, you have to first call init(0) and then init(n). This behaviour is analogous to that of the STL containers.

On fast==false, the vector is filled by zeros.

Implements libMesh::NumericVector< T >.

Definition at line 305 of file eigen_sparse_vector.h.

References libMesh::initialized(), libMesh::SERIAL, and libMesh::zero.

Referenced by libMesh::EigenSparseVector< T >::EigenSparseVector().

309 {
310  // Eigen vectors only for serial cases,
311  // but can provide a "parallel" vector on one processor.
312  if (n != n_local)
313  libmesh_error_msg("Error: EigenSparseVectors can only be used in serial!");
314 
315  this->_type = SERIAL;
316 
317  // Clear initialized vectors
318  if (this->initialized())
319  this->clear();
320 
321  _vec.resize(n);
322 
323  this->_is_initialized = true;
324 #ifndef NDEBUG
325  this->_is_closed = true;
326 #endif
327 
328  // Optionally zero out all components
329  if (fast == false)
330  this->zero ();
331 
332  return;
333 }
libMesh::EigenSparseVector::_vec
DataType _vec
Actual Eigen::SparseVector<> we are wrapping.
Definition: eigen_sparse_vector.h:240
libMesh::NumericVector::initialized
virtual bool initialized() const
Definition: numeric_vector.h:149
libMesh::NumericVector::_is_initialized
bool _is_initialized
true once init() has been called.
Definition: numeric_vector.h:717
libMesh::EigenSparseVector::clear
virtual void clear() override
Restores the NumericVector<T> to a pristine state.
Definition: eigen_sparse_vector.h:387
libMesh::NumericVector::_type
ParallelType _type
Type of vector.
Definition: numeric_vector.h:722
libMesh::EigenSparseVector::zero
virtual void zero() override
Set all entries to zero.
Definition: eigen_sparse_vector.h:400
libMesh::NumericVector::_is_closed
bool _is_closed
Flag which tracks whether the vector&#39;s values are consistent on all processors after insertion or add...
Definition: numeric_vector.h:712

◆ init() [2/4]

template<typename T >
void libMesh::EigenSparseVector< T >::init ( const numeric_index_type  n,
const bool  fast = false,
const ParallelType  ptype = AUTOMATIC 
)
overridevirtual

Call init() with n_local = N.

Implements libMesh::NumericVector< T >.

Definition at line 339 of file eigen_sparse_vector.h.

References libMesh::TriangleWrapper::init().

342 {
343  this->init(n,n,fast,ptype);
344 }
libMesh::EigenSparseVector::init
virtual void init(const numeric_index_type N, const numeric_index_type n_local, const bool fast=false, const ParallelType ptype=AUTOMATIC) override
Change the dimension of the vector to n.
Definition: eigen_sparse_vector.h:305

◆ init() [3/4]

template<typename T >
virtual void libMesh::EigenSparseVector< T >::init ( const numeric_index_type  n,
const numeric_index_type  n_local,
const std::vector< numeric_index_type > &  ghost,
const bool  fast = false,
const ParallelType  ptype = AUTOMATIC 
)
overridevirtual

Create a vector that holds tha local indices plus those specified in the ghost argument.

Implements libMesh::NumericVector< T >.

◆ init() [4/4]

template<class T >
void libMesh::EigenSparseVector< T >::init ( const NumericVector< T > &  other,
const bool  fast = false 
)
overridevirtual

Creates a vector that has the same dimension and storage type as other, including ghost dofs.

Implements libMesh::NumericVector< T >.

Definition at line 364 of file eigen_sparse_vector.h.

References libMesh::TriangleWrapper::init(), libMesh::NumericVector< T >::local_size(), libMesh::NumericVector< T >::size(), and libMesh::NumericVector< T >::type().

366 {
367  this->init(other.size(),other.local_size(),fast,other.type());
368 }
libMesh::EigenSparseVector::init
virtual void init(const numeric_index_type N, const numeric_index_type n_local, const bool fast=false, const ParallelType ptype=AUTOMATIC) override
Change the dimension of the vector to n.
Definition: eigen_sparse_vector.h:305

◆ initialized()

template<typename T>
virtual bool libMesh::NumericVector< T >::initialized ( ) const
virtualinherited
Returns
true if the vector has been initialized, false otherwise.

Definition at line 149 of file numeric_vector.h.

Referenced by libMesh::PetscVector< libMesh::Real >::init().

149 { return _is_initialized; }
libMesh::NumericVector::_is_initialized
bool _is_initialized
true once init() has been called.
Definition: numeric_vector.h:717

◆ insert() [1/5]

template<typename T>
virtual void libMesh::NumericVector< T >::insert ( const T *  v,
const std::vector< numeric_index_type > &  dof_indices 
)
virtualinherited

Inserts the entries of v in *this at the locations specified by v.

Reimplemented in libMesh::PetscVector< T >, libMesh::PetscVector< libMesh::Real >, and libMesh::EpetraVector< T >.

◆ insert() [2/5]

template<typename T>
void libMesh::NumericVector< T >::insert ( const std::vector< T > &  v,
const std::vector< numeric_index_type > &  dof_indices 
)
inherited

Inserts the entries of v in *this at the locations specified by v.

Definition at line 859 of file numeric_vector.h.

861 {
862  libmesh_assert(v.size() == dof_indices.size());
863  if (!v.empty())
864  this->insert(v.data(), dof_indices);
865 }
libMesh::NumericVector::insert
virtual void insert(const T *v, const std::vector< numeric_index_type > &dof_indices)
Inserts the entries of v in *this at the locations specified by v.

◆ insert() [3/5]

template<typename T>
virtual void libMesh::NumericVector< T >::insert ( const NumericVector< T > &  v,
const std::vector< numeric_index_type > &  dof_indices 
)
virtualinherited

Inserts the entries of v in *this at the locations specified by v.

◆ insert() [4/5]

template<typename T>
void libMesh::NumericVector< T >::insert ( const DenseVector< T > &  v,
const std::vector< numeric_index_type > &  dof_indices 
)
inherited

Inserts the entries of v in *this at the locations specified by v.

Definition at line 871 of file numeric_vector.h.

873 {
874  libmesh_assert(v.size() == dof_indices.size());
875  if (!v.empty())
876  this->insert(&v(0), dof_indices);
877 }
libMesh::NumericVector::insert
virtual void insert(const T *v, const std::vector< numeric_index_type > &dof_indices)
Inserts the entries of v in *this at the locations specified by v.

◆ insert() [5/5]

template<typename T>
void libMesh::NumericVector< T >::insert ( const DenseSubVector< T > &  v,
const std::vector< numeric_index_type > &  dof_indices 
)
inherited

Inserts the entries of v in *this at the locations specified by v.

Definition at line 883 of file numeric_vector.h.

885 {
886  libmesh_assert(v.size() == dof_indices.size());
887  if (!v.empty())
888  this->insert(&v(0), dof_indices);
889 }
libMesh::NumericVector::insert
virtual void insert(const T *v, const std::vector< numeric_index_type > &dof_indices)
Inserts the entries of v in *this at the locations specified by v.

◆ l1_norm()

template<typename T >
virtual Real libMesh::EigenSparseVector< T >::l1_norm ( ) const
overridevirtual
Returns
The $ \ell_1 $-norm of the vector, i.e. the sum of the absolute values of the entries.

Implements libMesh::NumericVector< T >.

◆ l2_norm()

template<typename T >
virtual Real libMesh::EigenSparseVector< T >::l2_norm ( ) const
overridevirtual
Returns
The $ \ell_2 $-norm of the vector, i.e. the square root of the sum of the squares of the entries.

Implements libMesh::NumericVector< T >.

◆ last_local_index()

template<typename T >
numeric_index_type libMesh::EigenSparseVector< T >::last_local_index ( ) const
overridevirtual
Returns
The index+1 of the last vector element actually stored on this processor.
Note
The maximum for this index is size().

Implements libMesh::NumericVector< T >.

Definition at line 468 of file eigen_sparse_vector.h.

References libMesh::initialized().

469 {
470  libmesh_assert (this->initialized());
471 
472  return this->size();
473 }
libMesh::NumericVector::initialized
virtual bool initialized() const
Definition: numeric_vector.h:149
libMesh::EigenSparseVector::size
virtual numeric_index_type size() const override
Definition: eigen_sparse_vector.h:435

◆ linfty_norm()

template<typename T >
virtual Real libMesh::EigenSparseVector< T >::linfty_norm ( ) const
overridevirtual
Returns
The $ \ell_{\infty} $-norm of the vector, i.e. the maximum absolute value of the entries of the vector.

Implements libMesh::NumericVector< T >.

◆ local_relative_compare()

template<typename T>
virtual int libMesh::NumericVector< T >::local_relative_compare ( const NumericVector< T > &  other_vector,
const Real  threshold = TOLERANCE 
) const
virtualinherited
Returns
-1 when this is equivalent to other_vector, (up to the given local relative threshold), or the first index where abs(a[i]-b[i])/max(a[i],b[i]) exceeds the threshold.

◆ local_size()

template<typename T >
numeric_index_type libMesh::EigenSparseVector< T >::local_size ( ) const
overridevirtual
Returns
The local size of the vector, i.e. index_stop - index_start.

Implements libMesh::NumericVector< T >.

Definition at line 446 of file eigen_sparse_vector.h.

References libMesh::initialized().

447 {
448  libmesh_assert (this->initialized());
449 
450  return this->size();
451 }
libMesh::NumericVector::initialized
virtual bool initialized() const
Definition: numeric_vector.h:149
libMesh::EigenSparseVector::size
virtual numeric_index_type size() const override
Definition: eigen_sparse_vector.h:435

◆ localize() [1/5]

template<typename T >
virtual void libMesh::EigenSparseVector< T >::localize ( std::vector< T > &  v_local) const
overridevirtual

Creates a copy of the global vector in the local vector v_local.

Implements libMesh::NumericVector< T >.

◆ localize() [2/5]

template<typename T >
virtual void libMesh::EigenSparseVector< T >::localize ( NumericVector< T > &  v_local) const
overridevirtual

Same, but fills a NumericVector<T> instead of a std::vector.

Implements libMesh::NumericVector< T >.

◆ localize() [3/5]

template<typename T >
virtual void libMesh::EigenSparseVector< T >::localize ( NumericVector< T > &  v_local,
const std::vector< numeric_index_type > &  send_list 
) const
overridevirtual

Creates a local vector v_local containing only information relevant to this processor, as defined by the send_list.

Implements libMesh::NumericVector< T >.

◆ localize() [4/5]

template<typename T >
virtual void libMesh::EigenSparseVector< T >::localize ( std::vector< T > &  v_local,
const std::vector< numeric_index_type > &  indices 
) const
overridevirtual


Fill in the local std::vector "v_local" with the global indices given in "indices".

Note
The indices can be different on every processor, and the same index can be localized to more than one processor. The resulting v_local can be shorter than the original, and the entries will be in the order specified by indices.

Example: 

*   On 4 procs *this = {a, b, c, d, e, f, g, h, i} is a parallel vector.
*   On each proc, the indices arrays are set up as:
*   proc0, indices = {1,2,4,5}
*   proc1, indices = {2,5,6,8}
*   proc2, indices = {2,3,6,7}
*   proc3, indices = {0,1,2,3}
*
*   After calling this version of localize, the v_local vectors are:
*   proc0, v_local = {b,c,e,f}
*   proc1, v_local = {c,f,g,i}
*   proc2, v_local = {c,d,g,h}
*   proc3, v_local = {a,b,c,d}
*

This function is useful in parallel I/O routines, when you have a parallel vector of solution values which you want to write a subset of.

Implements libMesh::NumericVector< T >.

◆ localize() [5/5]

template<typename T >
virtual void libMesh::EigenSparseVector< T >::localize ( const numeric_index_type  first_local_idx,
const numeric_index_type  last_local_idx,
const std::vector< numeric_index_type > &  send_list 
)
overridevirtual

Updates a local vector with selected values from neighboring processors, as defined by send_list.

Implements libMesh::NumericVector< T >.

◆ localize_to_one()

template<typename T >
virtual void libMesh::EigenSparseVector< T >::localize_to_one ( std::vector< T > &  v_local,
const processor_id_type  proc_id = 0 
) const
overridevirtual

Creates a local copy of the global vector in v_local only on processor proc_id.

By default the data is sent to processor 0. This method is useful for outputting data from one processor.

Implements libMesh::NumericVector< T >.

◆ max()

template<typename T >
virtual Real libMesh::EigenSparseVector< T >::max ( ) const
overridevirtual
Returns
The maximum entry in the vector, or the maximum real part in the case of complex numbers.

Implements libMesh::NumericVector< T >.

◆ min()

template<typename T >
virtual Real libMesh::EigenSparseVector< T >::min ( ) const
overridevirtual
Returns
The minimum entry in the vector, or the minimum real part in the case of complex numbers.

Implements libMesh::NumericVector< T >.

◆ n_objects()

static unsigned int libMesh::ReferenceCounter::n_objects ( )
staticinherited

Prints the number of outstanding (created, but not yet destroyed) objects.

Definition at line 83 of file reference_counter.h.

References libMesh::ReferenceCounter::_n_objects.

84  { return _n_objects; }
libMesh::ReferenceCounter::_n_objects
static Threads::atomic< unsigned int > _n_objects
The number of objects.
Definition: reference_counter.h:130

◆ n_processors()

processor_id_type libMesh::ParallelObject::n_processors ( ) const
inherited
Returns
The number of processors in the group.

Definition at line 95 of file parallel_object.h.

References libMesh::ParallelObject::_communicator, and libMesh::Parallel::Communicator::size().

Referenced by libMesh::MeshBase::partition().

96  { return cast_int<processor_id_type>(_communicator.size()); }
libMesh::Parallel::Communicator::size
processor_id_type size() const
Definition: communicator.h:175
libMesh::ParallelObject::_communicator
const Parallel::Communicator & _communicator
Definition: parallel_object.h:107

◆ operator()()

template<typename T >
T libMesh::EigenSparseVector< T >::operator() ( const numeric_index_type  i) const
overridevirtual
Returns
A copy of the ith entry of the vector.

Implements libMesh::NumericVector< T >.

Definition at line 511 of file eigen_sparse_vector.h.

References libMesh::initialized().

512 {
513  libmesh_assert (this->initialized());
514  libmesh_assert ( ((i >= this->first_local_index()) &&
515  (i < this->last_local_index())) );
516 
517  return _vec[static_cast<eigen_idx_type>(i)];
518 }
libMesh::EigenSparseVector::_vec
DataType _vec
Actual Eigen::SparseVector<> we are wrapping.
Definition: eigen_sparse_vector.h:240
libMesh::NumericVector::initialized
virtual bool initialized() const
Definition: numeric_vector.h:149
libMesh::EigenSparseVector::last_local_index
virtual numeric_index_type last_local_index() const override
Definition: eigen_sparse_vector.h:468
libMesh::eigen_idx_type
int32_t eigen_idx_type
Definition: eigen_core_support.h:66
libMesh::EigenSparseVector::first_local_index
virtual numeric_index_type first_local_index() const override
Definition: eigen_sparse_vector.h:457

◆ operator*=()

template<typename T>
NumericVector<T>& libMesh::NumericVector< T >::operator*= ( const T  a)
inherited

Scales the vector by a, $ \vec{u} \leftarrow a\vec{u} $.

Equivalent to u.scale(a)

Returns
A reference to *this.

Definition at line 391 of file numeric_vector.h.

391 { this->scale(a); return *this; }
libMesh::NumericVector::scale
virtual void scale(const T factor)=0
Scale each element of the vector by the given factor.

◆ operator+=()

template<typename T >
virtual NumericVector<T>& libMesh::EigenSparseVector< T >::operator+= ( const NumericVector< T > &  v)
overridevirtual

Adds v to *this, $ \vec{u} \leftarrow \vec{u} + \vec{v} $.

Equivalent to u.add(1, v).

Returns
A reference to *this.

Implements libMesh::NumericVector< T >.

◆ operator-=()

template<typename T >
virtual NumericVector<T>& libMesh::EigenSparseVector< T >::operator-= ( const NumericVector< T > &  v)
overridevirtual

Subtracts v from *this, $ \vec{u} \leftarrow \vec{u} - \vec{v} $.

Equivalent to u.add(-1, v).

Returns
A reference to *this.

Implements libMesh::NumericVector< T >.

◆ operator/=() [1/2]

template<typename T >
virtual NumericVector<T>& libMesh::EigenSparseVector< T >::operator/= ( const NumericVector< T > &  )
overridevirtual

Computes the pointwise division of this vector's entries by another's, $ u_i \leftarrow \frac{u_i}{v_i} \, \forall i$.

Returns
A reference to *this.

Implements libMesh::NumericVector< T >.

◆ operator/=() [2/2]

template<typename T>
NumericVector<T>& libMesh::NumericVector< T >::operator/= ( const T  a)
inherited

Scales the vector by 1/a, $ \vec{u} \leftarrow \frac{1}{a}\vec{u} $.

Equivalent to u.scale(1./a)

Returns
A reference to *this.

Definition at line 400 of file numeric_vector.h.

400 { this->scale(1./a); return *this; }
libMesh::NumericVector::scale
virtual void scale(const T factor)=0
Scale each element of the vector by the given factor.

◆ operator=() [1/5]

template<typename T >
EigenSparseVector<T>& libMesh::EigenSparseVector< T >::operator= ( const EigenSparseVector< T > &  v)

Copy assignment operator.

Does some state checks before copying the underlying Eigen data type.

Returns
A reference to *this as the derived type.

◆ operator=() [2/5]

template<typename T >
EigenSparseVector& libMesh::EigenSparseVector< T >::operator= ( EigenSparseVector< T > &&  )
default

◆ operator=() [3/5]

template<typename T >
virtual NumericVector<T>& libMesh::EigenSparseVector< T >::operator= ( const T  s)
overridevirtual

Sets all entries of the vector to the value s.

Returns
A reference to *this.

Implements libMesh::NumericVector< T >.

◆ operator=() [4/5]

template<typename T >
virtual NumericVector<T>& libMesh::EigenSparseVector< T >::operator= ( const NumericVector< T > &  v)
overridevirtual

This looks like a copy assignment operator, but note that, unlike normal copy assignment operators, it is pure virtual.

This function should be overridden in derived classes so that they can be copied correctly via references to the base class. This design usually isn't a good idea in general, but in this context it works because we usually don't have a mix of different kinds of NumericVectors active in the library at a single time.

Returns
A reference to *this as the base type.

Implements libMesh::NumericVector< T >.

◆ operator=() [5/5]

template<typename T >
virtual NumericVector<T>& libMesh::EigenSparseVector< T >::operator= ( const std::vector< T > &  v)
overridevirtual

Sets (*this)(i) = v(i) for each entry of the vector.

Returns
A reference to *this as the base type.

Implements libMesh::NumericVector< T >.

◆ pointwise_mult()

template<typename T >
virtual void libMesh::EigenSparseVector< T >::pointwise_mult ( const NumericVector< T > &  vec1,
const NumericVector< T > &  vec2 
)
overridevirtual

Computes $ u_i \leftarrow u_i v_i $ (summation not implied) i.e.

the pointwise (component-wise) product of vec1 and vec2, and stores the result in *this.

Implements libMesh::NumericVector< T >.

◆ print() [1/2]

template<typename T >
void libMesh::NumericVector< T >::print ( std::ostream &  os = libMesh::out) const
virtualinherited

Prints the local contents of the vector, by default to libMesh::out.

Definition at line 916 of file numeric_vector.h.

917 {
918  libmesh_assert (this->initialized());
919  os << "Size\tglobal = " << this->size()
920  << "\t\tlocal = " << this->local_size() << std::endl;
921 
922  os << "#\tValue" << std::endl;
923  for (numeric_index_type i=this->first_local_index(); i<this->last_local_index(); i++)
924  os << i << "\t" << (*this)(i) << std::endl;
925 }
libMesh::NumericVector::initialized
virtual bool initialized() const
Definition: numeric_vector.h:149
libMesh::NumericVector::size
virtual numeric_index_type size() const =0
libMesh::numeric_index_type
dof_id_type numeric_index_type
Definition: id_types.h:92
libMesh::NumericVector::first_local_index
virtual numeric_index_type first_local_index() const =0
libMesh::NumericVector::local_size
virtual numeric_index_type local_size() const =0
libMesh::NumericVector::last_local_index
virtual numeric_index_type last_local_index() const =0

◆ print() [2/2]

template<>
void libMesh::NumericVector< Complex >::print ( std::ostream &  os) const
inherited

Definition at line 898 of file numeric_vector.h.

899 {
900  libmesh_assert (this->initialized());
901  os << "Size\tglobal = " << this->size()
902  << "\t\tlocal = " << this->local_size() << std::endl;
903 
904  // std::complex<>::operator<<() is defined, but use this form
905  os << "#\tReal part\t\tImaginary part" << std::endl;
906  for (numeric_index_type i=this->first_local_index(); i<this->last_local_index(); i++)
907  os << i << "\t"
908  << (*this)(i).real() << "\t\t"
909  << (*this)(i).imag() << std::endl;
910 }
libMesh::NumericVector::initialized
virtual bool initialized() const
Definition: numeric_vector.h:149
libMesh::NumericVector::size
virtual numeric_index_type size() const =0
libMesh::numeric_index_type
dof_id_type numeric_index_type
Definition: id_types.h:92
libMesh::NumericVector::first_local_index
virtual numeric_index_type first_local_index() const =0
libMesh::NumericVector::local_size
virtual numeric_index_type local_size() const =0
libMesh::NumericVector::last_local_index
virtual numeric_index_type last_local_index() const =0

◆ print_global() [1/2]

template<typename T >
void libMesh::NumericVector< T >::print_global ( std::ostream &  os = libMesh::out) const
virtualinherited

Prints the global contents of the vector, by default to libMesh::out.

Definition at line 953 of file numeric_vector.h.

954 {
955  libmesh_assert (this->initialized());
956 
957  std::vector<T> v(this->size());
958  this->localize(v);
959 
960  // Right now we only want one copy of the output
961  if (this->processor_id())
962  return;
963 
964  os << "Size\tglobal = " << this->size() << std::endl;
965  os << "#\tValue" << std::endl;
966  for (numeric_index_type i=0; i!=v.size(); i++)
967  os << i << "\t" << v[i] << std::endl;
968 }
libMesh::NumericVector::initialized
virtual bool initialized() const
Definition: numeric_vector.h:149
libMesh::NumericVector::size
virtual numeric_index_type size() const =0
libMesh::numeric_index_type
dof_id_type numeric_index_type
Definition: id_types.h:92
libMesh::ParallelObject::processor_id
processor_id_type processor_id() const
Definition: parallel_object.h:101
libMesh::NumericVector::localize
virtual void localize(std::vector< T > &v_local) const =0
Creates a copy of the global vector in the local vector v_local.

◆ print_global() [2/2]

template<>
void libMesh::NumericVector< Complex >::print_global ( std::ostream &  os) const
inherited

Definition at line 931 of file numeric_vector.h.

932 {
933  libmesh_assert (this->initialized());
934 
935  std::vector<Complex> v(this->size());
936  this->localize(v);
937 
938  // Right now we only want one copy of the output
939  if (this->processor_id())
940  return;
941 
942  os << "Size\tglobal = " << this->size() << std::endl;
943  os << "#\tReal part\t\tImaginary part" << std::endl;
944  for (numeric_index_type i=0; i!=v.size(); i++)
945  os << i << "\t"
946  << v[i].real() << "\t\t"
947  << v[i].imag() << std::endl;
948 }
libMesh::NumericVector::initialized
virtual bool initialized() const
Definition: numeric_vector.h:149
libMesh::NumericVector::size
virtual numeric_index_type size() const =0
libMesh::numeric_index_type
dof_id_type numeric_index_type
Definition: id_types.h:92
libMesh::ParallelObject::processor_id
processor_id_type processor_id() const
Definition: parallel_object.h:101
libMesh::NumericVector::localize
virtual void localize(std::vector< T > &v_local) const =0
Creates a copy of the global vector in the local vector v_local.

◆ print_info()

static void libMesh::ReferenceCounter::print_info ( std::ostream &  out = libMesh::out)
staticinherited

Prints the reference information, by default to libMesh::out.

◆ print_matlab()

template<typename T>
virtual void libMesh::NumericVector< T >::print_matlab ( const std::string &  = "") const
virtualinherited

Print the contents of the vector in Matlab's sparse matrix format.

Optionally prints the vector to the file named name. If name is not specified it is dumped to the screen.

Reimplemented in libMesh::PetscVector< T >, and libMesh::PetscVector< libMesh::Real >.

Definition at line 681 of file numeric_vector.h.

682  {
683  libmesh_not_implemented();
684  }

◆ processor_id()

processor_id_type libMesh::ParallelObject::processor_id ( ) const
inherited
Returns
The rank of this processor in the group.

Definition at line 101 of file parallel_object.h.

References libMesh::ParallelObject::_communicator, and libMesh::Parallel::Communicator::rank().

Referenced by libMesh::DofMap::end_dof(), libMesh::DofMap::end_old_dof(), libMesh::DofMap::first_dof(), libMesh::DofMap::first_old_dof(), libMesh::DofMap::last_dof(), libMesh::MeshBase::n_active_local_elem(), libMesh::DofMap::n_local_dofs(), libMesh::MeshBase::n_local_elem(), libMesh::MeshBase::n_local_nodes(), and libMesh::MeshTools::weight().

102  { return cast_int<processor_id_type>(_communicator.rank()); }
libMesh::ParallelObject::_communicator
const Parallel::Communicator & _communicator
Definition: parallel_object.h:107
libMesh::Parallel::Communicator::rank
processor_id_type rank() const
Definition: communicator.h:173

◆ reciprocal()

template<typename T >
virtual void libMesh::EigenSparseVector< T >::reciprocal ( )
overridevirtual

Computes the pointwise reciprocal, $ u_i \leftarrow \frac{1}{u_i} \, \forall i$.

Implements libMesh::NumericVector< T >.

◆ scale()

template<typename T >
virtual void libMesh::EigenSparseVector< T >::scale ( const T  factor)
overridevirtual

Scale each element of the vector by the given factor.

Implements libMesh::NumericVector< T >.

◆ set()

template<typename T >
void libMesh::EigenSparseVector< T >::set ( const numeric_index_type  i,
const T  value 
)
overridevirtual

Sets v(i) = value.

Implements libMesh::NumericVector< T >.

Definition at line 479 of file eigen_sparse_vector.h.

References libMesh::initialized().

480 {
481  libmesh_assert (this->initialized());
482  libmesh_assert_less (i, this->size());
483 
484  _vec[static_cast<eigen_idx_type>(i)] = value;
485 
486 #ifndef NDEBUG
487  this->_is_closed = false;
488 #endif
489 }
libMesh::EigenSparseVector::_vec
DataType _vec
Actual Eigen::SparseVector<> we are wrapping.
Definition: eigen_sparse_vector.h:240
libMesh::NumericVector::initialized
virtual bool initialized() const
Definition: numeric_vector.h:149
libMesh::eigen_idx_type
int32_t eigen_idx_type
Definition: eigen_core_support.h:66
libMesh::EigenSparseVector::size
virtual numeric_index_type size() const override
Definition: eigen_sparse_vector.h:435
libMesh::NumericVector::_is_closed
bool _is_closed
Flag which tracks whether the vector&#39;s values are consistent on all processors after insertion or add...
Definition: numeric_vector.h:712

◆ size()

template<typename T >
numeric_index_type libMesh::EigenSparseVector< T >::size ( ) const
overridevirtual
Returns
The size of the vector.

Implements libMesh::NumericVector< T >.

Definition at line 435 of file eigen_sparse_vector.h.

References libMesh::initialized().

436 {
437  libmesh_assert (this->initialized());
438 
439  return static_cast<numeric_index_type>(_vec.size());
440 }
libMesh::EigenSparseVector::_vec
DataType _vec
Actual Eigen::SparseVector<> we are wrapping.
Definition: eigen_sparse_vector.h:240
libMesh::NumericVector::initialized
virtual bool initialized() const
Definition: numeric_vector.h:149
libMesh::numeric_index_type
dof_id_type numeric_index_type
Definition: id_types.h:92

◆ subset_l1_norm()

template<typename T>
virtual Real libMesh::NumericVector< T >::subset_l1_norm ( const std::set< numeric_index_type > &  indices) const
virtualinherited
Returns
The $ \ell_1 $-norm of the vector, i.e. the sum of the absolute values for the specified entries in the vector.
Note
The indices must necessarily live on this processor.

◆ subset_l2_norm()

template<typename T>
virtual Real libMesh::NumericVector< T >::subset_l2_norm ( const std::set< numeric_index_type > &  indices) const
virtualinherited
Returns
The $ \ell_2 $-norm of the vector, i.e. the square root of the sum of the squares of the elements for the specified entries in the vector.
Note
The indices must necessarily live on this processor.

◆ subset_linfty_norm()

template<typename T>
virtual Real libMesh::NumericVector< T >::subset_linfty_norm ( const std::set< numeric_index_type > &  indices) const
virtualinherited
Returns
The maximum absolute value of the specified entries of this vector, which is the $ \ell_{\infty} $-norm of a vector.
Note
The indices must necessarily live on this processor.

◆ sum()

template<typename T >
virtual T libMesh::EigenSparseVector< T >::sum ( ) const
overridevirtual
Returns
The sum of all values in the vector.

Implements libMesh::NumericVector< T >.

◆ swap()

template<typename T >
void libMesh::EigenSparseVector< T >::swap ( NumericVector< T > &  v)
overridevirtual

Swaps the contents of this with v.

There should be enough indirection in subclasses to make this an O(1) header-swap operation.

Reimplemented from libMesh::NumericVector< T >.

Definition at line 524 of file eigen_sparse_vector.h.

References libMesh::EigenSparseVector< T >::swap(), and swap().

Referenced by libMesh::EigenSparseVector< T >::swap().

525 {
526  EigenSparseVector<T> & v = cast_ref<EigenSparseVector<T> &>(other);
527 
528  _vec.swap(v._vec);
529 
530  std::swap (this->_is_closed, v._is_closed);
531  std::swap (this->_is_initialized, v._is_initialized);
532  std::swap (this->_type, v._type);
533 }
libMesh::EigenSparseVector::_vec
DataType _vec
Actual Eigen::SparseVector<> we are wrapping.
Definition: eigen_sparse_vector.h:240
libMesh::NumericVector::_is_initialized
bool _is_initialized
true once init() has been called.
Definition: numeric_vector.h:717
libMesh::NumericVector::_type
ParallelType _type
Type of vector.
Definition: numeric_vector.h:722
swap
void swap(Iterator &lhs, Iterator &rhs)
swap, used to implement op=
Definition: variant_filter_iterator.h:478
libMesh::NumericVector::_is_closed
bool _is_closed
Flag which tracks whether the vector&#39;s values are consistent on all processors after insertion or add...
Definition: numeric_vector.h:712

◆ type() [1/2]

template<typename T>
ParallelType libMesh::NumericVector< T >::type ( ) const
inherited
Returns
The type (SERIAL, PARALLEL, GHOSTED) of the vector.

Definition at line 154 of file numeric_vector.h.

Referenced by libMesh::EpetraVector< T >::EpetraVector(), libMesh::DistributedVector< T >::init(), libMesh::EigenSparseVector< T >::init(), libMesh::LaspackVector< T >::init(), and libMesh::EpetraVector< T >::init().

154 { return _type; }
libMesh::NumericVector::_type
ParallelType _type
Type of vector.
Definition: numeric_vector.h:722

◆ type() [2/2]

template<typename T>
ParallelType& libMesh::NumericVector< T >::type ( )
inherited
Returns
The type (SERIAL, PARALLEL, GHOSTED) of the vector.

Definition at line 159 of file numeric_vector.h.

159 { return _type; }
libMesh::NumericVector::_type
ParallelType _type
Type of vector.
Definition: numeric_vector.h:722

◆ vec() [1/2]

template<typename T >
DataType& libMesh::EigenSparseVector< T >::vec ( )

References to the underlying Eigen data types.

Note
This is generally not required in user-level code.

Definition at line 232 of file eigen_sparse_vector.h.

References libMesh::EigenSparseVector< T >::_vec.

232 { return _vec; }
libMesh::EigenSparseVector::_vec
DataType _vec
Actual Eigen::SparseVector<> we are wrapping.
Definition: eigen_sparse_vector.h:240

◆ vec() [2/2]

template<typename T >
const DataType& libMesh::EigenSparseVector< T >::vec ( ) const

Definition at line 233 of file eigen_sparse_vector.h.

References libMesh::EigenSparseVector< T >::_vec.

233 { return _vec; }
libMesh::EigenSparseVector::_vec
DataType _vec
Actual Eigen::SparseVector<> we are wrapping.
Definition: eigen_sparse_vector.h:240

◆ zero()

template<typename T >
void libMesh::EigenSparseVector< T >::zero ( )
overridevirtual

Set all entries to zero.

Equivalent to v = 0, but more obvious and faster.

Implements libMesh::NumericVector< T >.

Definition at line 400 of file eigen_sparse_vector.h.

References libMesh::closed(), and libMesh::initialized().

401 {
402  libmesh_assert (this->initialized());
403  libmesh_assert (this->closed());
404 
405  _vec.setZero();
406 }
libMesh::EigenSparseVector::_vec
DataType _vec
Actual Eigen::SparseVector<> we are wrapping.
Definition: eigen_sparse_vector.h:240
libMesh::NumericVector::initialized
virtual bool initialized() const
Definition: numeric_vector.h:149
libMesh::NumericVector::closed
virtual bool closed() const
Definition: numeric_vector.h:165

◆ zero_clone()

template<typename T >
std::unique_ptr< NumericVector< T > > libMesh::EigenSparseVector< T >::zero_clone ( ) const
overridevirtual
Returns
A smart pointer to a copy of this vector with the same type, size, and partitioning, but with all zero entries.
Note
This must be overridden in the derived classes.

Implements libMesh::NumericVector< T >.

Definition at line 412 of file eigen_sparse_vector.h.

References libMesh::NumericVector< T >::init().

413 {
414  NumericVector<T> * cloned_vector = new EigenSparseVector<T>(this->comm());
415  cloned_vector->init(*this);
416  return std::unique_ptr<NumericVector<T>>(cloned_vector);
417 }
libMesh::ParallelObject::comm
const Parallel::Communicator & comm() const
Definition: parallel_object.h:89

Friends And Related Function Documentation

◆ EigenSparseLinearSolver< T >

template<typename T >
friend class EigenSparseLinearSolver< T >
friend

Definition at line 246 of file eigen_sparse_vector.h.

◆ EigenSparseMatrix< T >

template<typename T >
friend class EigenSparseMatrix< T >
friend

Make other Eigen datatypes friends.

Definition at line 245 of file eigen_sparse_vector.h.

Member Data Documentation

◆ _communicator

const Parallel::Communicator& libMesh::ParallelObject::_communicator
protectedinherited

Definition at line 107 of file parallel_object.h.

Referenced by libMesh::ParallelObject::comm(), libMesh::ParallelObject::n_processors(), libMesh::ParallelObject::operator=(), and libMesh::ParallelObject::processor_id().

◆ _counts

Counts libMesh::ReferenceCounter::_counts
staticprotectedinherited

Actually holds the data.

Definition at line 122 of file reference_counter.h.

Referenced by libMesh::ReferenceCounter::increment_constructor_count(), and libMesh::ReferenceCounter::increment_destructor_count().

◆ _enable_print_counter

bool libMesh::ReferenceCounter::_enable_print_counter
staticprotectedinherited

Flag to control whether reference count information is printed when print_info is called.

Definition at line 141 of file reference_counter.h.

◆ _is_closed

template<typename T>
bool libMesh::NumericVector< T >::_is_closed
protectedinherited

Flag which tracks whether the vector's values are consistent on all processors after insertion or addition of values has occurred on some or all processors.

Definition at line 712 of file numeric_vector.h.

Referenced by libMesh::NumericVector< Number >::closed(), and libMesh::EpetraVector< T >::EpetraVector().

◆ _is_initialized

template<typename T>
bool libMesh::NumericVector< T >::_is_initialized
protectedinherited

true once init() has been called.

Definition at line 717 of file numeric_vector.h.

Referenced by libMesh::EpetraVector< T >::EpetraVector(), and libMesh::NumericVector< Number >::initialized().

◆ _mutex

Threads::spin_mutex libMesh::ReferenceCounter::_mutex
staticprotectedinherited

Mutual exclusion object to enable thread-safe reference counting.

Definition at line 135 of file reference_counter.h.

◆ _n_objects

Threads::atomic<unsigned int> libMesh::ReferenceCounter::_n_objects
staticprotectedinherited

The number of objects.

Print the reference count information when the number returns to 0.

Definition at line 130 of file reference_counter.h.

Referenced by libMesh::ReferenceCounter::n_objects(), libMesh::ReferenceCounter::ReferenceCounter(), and libMesh::ReferenceCounter::~ReferenceCounter().

◆ _type

template<typename T>
ParallelType libMesh::NumericVector< T >::_type
protectedinherited

Type of vector.

Definition at line 722 of file numeric_vector.h.

Referenced by libMesh::DistributedVector< T >::DistributedVector(), libMesh::EigenSparseVector< T >::EigenSparseVector(), libMesh::EpetraVector< T >::EpetraVector(), libMesh::PetscVector< libMesh::Real >::init(), libMesh::LaspackVector< T >::LaspackVector(), and libMesh::NumericVector< Number >::type().

◆ _vec

template<typename T >
DataType libMesh::EigenSparseVector< T >::_vec
private

Actual Eigen::SparseVector<> we are wrapping.

Definition at line 240 of file eigen_sparse_vector.h.

Referenced by libMesh::EigenSparseVector< T >::vec().

The documentation for this class was generated from the following files:
Generated on Thu Apr 25 2019 13:34:10 for libMesh by   doxygen 1.8.14