libMesh
|
This class provides a nice interface to the Trilinos Epetra_Vector object. More...
#include <trilinos_epetra_vector.h>
Public Member Functions | |
EpetraVector (const Parallel::Communicator &comm, const ParallelType type=AUTOMATIC) | |
Dummy-Constructor. More... | |
EpetraVector (const Parallel::Communicator &comm, const numeric_index_type n, const ParallelType type=AUTOMATIC) | |
Constructor. More... | |
EpetraVector (const Parallel::Communicator &comm, const numeric_index_type n, const numeric_index_type n_local, const ParallelType type=AUTOMATIC) | |
Constructor. More... | |
EpetraVector (const Parallel::Communicator &comm, const numeric_index_type N, const numeric_index_type n_local, const std::vector< numeric_index_type > &ghost, const ParallelType type=AUTOMATIC) | |
Constructor. More... | |
EpetraVector (Epetra_Vector &v, const Parallel::Communicator &comm) | |
Constructor. More... | |
EpetraVector (EpetraVector &&)=delete | |
This class manages the lifetime of an Epetra_Vector manually, so we don't want to allow any automatic copy/move functions to be generated, and we can't default the destructor. More... | |
EpetraVector (const EpetraVector &)=delete | |
EpetraVector & | operator= (const EpetraVector &)=delete |
EpetraVector & | operator= (EpetraVector &&)=delete |
virtual | ~EpetraVector () |
virtual void | close () override |
Calls the NumericVector's internal assembly routines, ensuring that the values are consistent across processors. More... | |
virtual void | clear () noexcept override |
clear() is called from the destructor, so it should not throw. More... | |
virtual void | zero () override |
Set all entries to zero. More... | |
virtual std::unique_ptr< NumericVector< T > > | zero_clone () const override |
virtual std::unique_ptr< NumericVector< T > > | clone () const override |
virtual void | init (const numeric_index_type N, const numeric_index_type n_local, const bool fast=false, const ParallelType type=AUTOMATIC) override |
Change the dimension of the vector to n . More... | |
virtual void | init (const numeric_index_type N, const bool fast=false, const ParallelType type=AUTOMATIC) override |
Call init() with n_local = N. More... | |
virtual void | init (const numeric_index_type N, const numeric_index_type n_local, const std::vector< numeric_index_type > &ghost, const bool fast=false, const ParallelType=AUTOMATIC) override |
Create a vector that holds the local indices plus those specified in the ghost argument. More... | |
virtual void | init (const NumericVector< T > &other, const bool fast=false) override |
Creates a vector that has the same dimension and storage type as other , including ghost dofs. More... | |
virtual NumericVector< T > & | operator= (const T s) override |
Sets all entries of the vector to the value s . More... | |
virtual NumericVector< T > & | operator= (const NumericVector< T > &v) override |
This looks like a copy assignment operator, but note that, unlike normal copy assignment operators, it is pure virtual. More... | |
virtual NumericVector< T > & | operator= (const std::vector< T > &v) override |
Sets (*this)(i) = v(i) for each entry of the vector. More... | |
virtual Real | min () const override |
virtual Real | max () const override |
virtual T | sum () const override |
virtual Real | l1_norm () const override |
virtual Real | l2_norm () const override |
virtual Real | linfty_norm () const override |
virtual numeric_index_type | size () const override |
virtual numeric_index_type | local_size () const override |
virtual numeric_index_type | first_local_index () const override |
virtual numeric_index_type | last_local_index () const override |
virtual T | operator() (const numeric_index_type i) const override |
virtual NumericVector< T > & | operator+= (const NumericVector< T > &v) override |
Adds v to *this, \( \vec{u} \leftarrow \vec{u} + \vec{v} \). More... | |
virtual NumericVector< T > & | operator-= (const NumericVector< T > &v) override |
Subtracts v from *this, \( \vec{u} \leftarrow \vec{u} - \vec{v} \). More... | |
virtual NumericVector< T > & | operator*= (const NumericVector< T > &v) override |
Computes the component-wise multiplication of this vector's entries by another's, \( u_i \leftarrow u_i v_i \, \forall i\). More... | |
virtual NumericVector< T > & | operator/= (const NumericVector< T > &v) override |
Computes the component-wise division of this vector's entries by another's, \( u_i \leftarrow \frac{u_i}{v_i} \, \forall i\). More... | |
virtual void | reciprocal () override |
Computes the component-wise reciprocal, \( u_i \leftarrow \frac{1}{u_i} \, \forall i\). More... | |
virtual void | conjugate () override |
Negates the imaginary component of each entry in the vector. More... | |
virtual void | set (const numeric_index_type i, const T value) override |
Sets v(i) = value . More... | |
virtual void | add (const numeric_index_type i, const T value) override |
Adds value to the vector entry specified by i . More... | |
virtual void | add (const T s) override |
Adds s to each entry of the vector, \( u_i \leftarrow u_i + s \). More... | |
virtual void | add (const NumericVector< T > &v) override |
Adds v to this , \( \vec{u} \leftarrow \vec{u} + \vec{v} \). More... | |
virtual void | add (const T a, const NumericVector< T > &v) override |
Vector addition with a scalar multiple, \( \vec{u} \leftarrow \vec{u} + a\vec{v} \). More... | |
virtual void | add_vector (const T *v, const std::vector< numeric_index_type > &dof_indices) override |
Computes \( \vec{u} \leftarrow \vec{u} + \vec{v} \), where v is a pointer and each dof_indices [i] specifies where to add value v [i]. More... | |
virtual void | add_vector (const NumericVector< T > &v, const SparseMatrix< T > &A) override |
Computes \( \vec{u} \leftarrow \vec{u} + A \vec{v} \), i.e. More... | |
virtual void | add_vector_transpose (const NumericVector< T > &v, const SparseMatrix< T > &A) override |
Computes \( \vec{u} \leftarrow \vec{u} + A^T \vec{v} \), i.e. More... | |
virtual void | insert (const T *v, const std::vector< numeric_index_type > &dof_indices) override |
Inserts the entries of v in *this at the locations specified by v . More... | |
virtual void | scale (const T factor) override |
Scale each element of the vector by the given factor . More... | |
virtual void | abs () override |
Sets \( u_i \leftarrow |u_i| \) for each entry in the vector. More... | |
virtual T | dot (const NumericVector< T > &v) const override |
virtual void | localize (std::vector< T > &v_local) const override |
Creates a copy of the global vector in the local vector v_local . More... | |
virtual void | localize (NumericVector< T > &v_local) const override |
Same, but fills a NumericVector<T> instead of a std::vector . More... | |
virtual void | localize (NumericVector< T > &v_local, const std::vector< numeric_index_type > &send_list) const override |
Creates a local vector v_local containing only information relevant to this processor, as defined by the send_list . More... | |
virtual void | localize (std::vector< T > &v_local, const std::vector< numeric_index_type > &indices) const override |
Fill in the local std::vector "v_local" with the global indices given in "indices". More... | |
virtual void | localize (const numeric_index_type first_local_idx, const numeric_index_type last_local_idx, const std::vector< numeric_index_type > &send_list) override |
Updates a local vector with selected values from neighboring processors, as defined by send_list . More... | |
virtual void | localize_to_one (std::vector< T > &v_local, const processor_id_type proc_id=0) const override |
Creates a local copy of the global vector in v_local only on processor proc_id . More... | |
virtual void | pointwise_mult (const NumericVector< T > &vec1, const NumericVector< T > &vec2) override |
Computes \( u_i \leftarrow u_i v_i \) (summation not implied) i.e. More... | |
virtual void | swap (NumericVector< T > &v) override |
Swaps the contents of this with v . More... | |
virtual std::size_t | max_allowed_id () const override |
Epetra_Vector * | vec () |
virtual bool | initialized () const |
ParallelType | type () const |
ParallelType & | type () |
void | set_type (ParallelType t) |
Allow the user to change the ParallelType of the NumericVector under some circumstances. More... | |
virtual bool | closed () const |
virtual Real | subset_l1_norm (const std::set< numeric_index_type > &indices) const |
virtual Real | subset_l2_norm (const std::set< numeric_index_type > &indices) const |
virtual Real | subset_linfty_norm (const std::set< numeric_index_type > &indices) const |
Real | l2_norm_diff (const NumericVector< T > &other_vec) const |
Real | l1_norm_diff (const NumericVector< T > &other_vec) const |
virtual T | el (const numeric_index_type i) const |
virtual void | get (const std::vector< numeric_index_type > &index, T *values) const |
Access multiple components at once. More... | |
void | get (const std::vector< numeric_index_type > &index, std::vector< T > &values) const |
Access multiple components at once. More... | |
NumericVector< T > & | operator*= (const T a) |
Scales the vector by a , \( \vec{u} \leftarrow a\vec{u} \). More... | |
NumericVector< T > & | operator/= (const T a) |
Scales the vector by 1/a , \( \vec{u} \leftarrow \frac{1}{a}\vec{u} \). More... | |
void | add_vector (const std::vector< T > &v, const std::vector< numeric_index_type > &dof_indices) |
Computes \( \vec{u} \leftarrow \vec{u} + \vec{v} \), where v is a std::vector and each dof_indices [i] specifies where to add value v [i]. More... | |
void | add_vector (const NumericVector< T > &v, const std::vector< numeric_index_type > &dof_indices) |
Computes \( \vec{u} \leftarrow \vec{u} + \vec{v} \), where v is a NumericVector and each dof_indices [i] specifies where to add value v(i) . More... | |
void | add_vector (const DenseVector< T > &v, const std::vector< numeric_index_type > &dof_indices) |
Computes \( \vec{u} \leftarrow \vec{u} + \vec{v} \), where v is a DenseVector and each dof_indices [i] specifies where to add value v(i) . More... | |
void | add_vector (const NumericVector< T > &v, const ShellMatrix< T > &A) |
Computes \( \vec{u} \leftarrow \vec{u} + A \vec{v} \), i.e. More... | |
void | insert (const std::vector< T > &v, const std::vector< numeric_index_type > &dof_indices) |
Inserts the entries of v in *this at the locations specified by v . More... | |
void | insert (const NumericVector< T > &v, const std::vector< numeric_index_type > &dof_indices) |
Inserts the entries of v in *this at the locations specified by v . More... | |
void | insert (const DenseVector< T > &v, const std::vector< numeric_index_type > &dof_indices) |
Inserts the entries of v in *this at the locations specified by v . More... | |
void | insert (const DenseSubVector< T > &v, const std::vector< numeric_index_type > &dof_indices) |
Inserts the entries of v in *this at the locations specified by v . More... | |
virtual int | compare (const NumericVector< T > &other_vector, const Real threshold=TOLERANCE) const |
virtual int | local_relative_compare (const NumericVector< T > &other_vector, const Real threshold=TOLERANCE) const |
virtual int | global_relative_compare (const NumericVector< T > &other_vector, const Real threshold=TOLERANCE) const |
virtual void | pointwise_divide (const NumericVector< T > &vec1, const NumericVector< T > &vec2)=0 |
Computes \( u_i \leftarrow \frac{v_{1,i}}{v_{2,i}} \) (summation not implied) i.e. More... | |
virtual void | print (std::ostream &os=libMesh::out) const |
Prints the local contents of the vector, by default to libMesh::out. More... | |
template<> | |
void | print (std::ostream &os) const |
virtual void | print_global (std::ostream &os=libMesh::out) const |
Prints the global contents of the vector, by default to libMesh::out. More... | |
template<> | |
void | print_global (std::ostream &os) const |
virtual void | print_matlab (const std::string &filename="") const |
Print the contents of the vector in Matlab's sparse matrix format. More... | |
virtual void | read_matlab (const std::string &filename) |
Read the contents of the vector from the Matlab-script format used by PETSc. More... | |
virtual void | create_subvector (NumericVector< T > &, const std::vector< numeric_index_type > &, bool=true) const |
Fills in subvector from this vector using the indices in rows . More... | |
virtual std::unique_ptr< NumericVector< T > > | get_subvector (const std::vector< numeric_index_type > &) |
Creates a view into this vector using the indices in rows . More... | |
virtual void | restore_subvector (std::unique_ptr< NumericVector< T >>, const std::vector< numeric_index_type > &) |
Restores a view into this vector using the indices in rows . More... | |
bool | readable () const |
bool | compatible (const NumericVector< T > &v) const |
const Parallel::Communicator & | comm () const |
processor_id_type | n_processors () const |
processor_id_type | processor_id () const |
Static Public Member Functions | |
static std::unique_ptr< NumericVector< T > > | build (const Parallel::Communicator &comm, SolverPackage solver_package=libMesh::default_solver_package(), ParallelType parallel_type=AUTOMATIC) |
Builds a NumericVector on the processors in communicator comm using the linear solver package specified by solver_package . More... | |
static std::string | get_info () |
Gets a string containing the reference information. More... | |
static void | print_info (std::ostream &out_stream=libMesh::out) |
Prints the reference information, by default to libMesh::out . More... | |
static unsigned int | n_objects () |
Prints the number of outstanding (created, but not yet destroyed) objects. More... | |
static void | enable_print_counter_info () |
Methods to enable/disable the reference counter output from print_info() More... | |
static void | disable_print_counter_info () |
Protected Types | |
typedef std::map< std::string, std::pair< unsigned int, unsigned int > > | Counts |
Data structure to log the information. More... | |
Protected Member Functions | |
void | increment_constructor_count (const std::string &name) noexcept |
Increments the construction counter. More... | |
void | increment_destructor_count (const std::string &name) noexcept |
Increments the destruction counter. More... | |
Protected Attributes | |
bool | _is_closed |
Flag which tracks whether the vector's values are consistent on all processors after insertion or addition of values has occurred on some or all processors. More... | |
bool | _is_initialized |
true once init() has been called. More... | |
ParallelType | _type |
Type of vector. More... | |
std::mutex | _numeric_vector_mutex |
Mutex for performing thread-safe operations. More... | |
const Parallel::Communicator & | _communicator |
Static Protected Attributes | |
static Counts | _counts |
Actually holds the data. More... | |
static Threads::atomic< unsigned int > | _n_objects |
The number of objects. More... | |
static Threads::spin_mutex | _mutex |
Mutual exclusion object to enable thread-safe reference counting. More... | |
static bool | _enable_print_counter = true |
Flag to control whether reference count information is printed when print_info is called. More... | |
Private Member Functions | |
int | SumIntoGlobalValues (int numIDs, const int *GIDs, const double *values) |
Accumulate values into the vector, adding them to any values that already exist for the specified indices. More... | |
int | SumIntoGlobalValues (const Epetra_IntSerialDenseVector &GIDs, const Epetra_SerialDenseVector &values) |
Accumulate values into the vector, adding them to any values that already exist for the specified GIDs. More... | |
int | ReplaceGlobalValues (int numIDs, const int *GIDs, const double *values) |
Copy values into the vector overwriting any values that already exist for the specified indices. More... | |
int | ReplaceGlobalValues (const Epetra_IntSerialDenseVector &GIDs, const Epetra_SerialDenseVector &values) |
Copy values into the vector, replacing any values that already exist for the specified GIDs. More... | |
int | SumIntoGlobalValues (int numIDs, const int *GIDs, const int *numValuesPerID, const double *values) |
int | ReplaceGlobalValues (int numIDs, const int *GIDs, const int *numValuesPerID, const double *values) |
int | GlobalAssemble (Epetra_CombineMode mode=Add) |
Gather any overlapping/shared data into the non-overlapping partitioning defined by the Map that was passed to this vector at construction time. More... | |
void | setIgnoreNonLocalEntries (bool flag) |
Set whether or not non-local data values should be ignored. More... | |
void | FEoperatorequals (const EpetraVector &source) |
int | inputValues (int numIDs, const int *GIDs, const double *values, bool accumulate) |
int | inputValues (int numIDs, const int *GIDs, const int *numValuesPerID, const double *values, bool accumulate) |
int | inputNonlocalValue (int GID, double value, bool accumulate) |
int | inputNonlocalValues (int GID, int numValues, const double *values, bool accumulate) |
void | destroyNonlocalData () |
Private Attributes | |
Epetra_Vector * | _vec |
Actual Epetra vector datatype to hold vector entries. More... | |
std::unique_ptr< Epetra_Map > | _map |
Holds the distributed Map. More... | |
bool | _destroy_vec_on_exit |
This boolean value should only be set to false for the constructor which takes a Epetra Vec object. More... | |
int | myFirstID_ |
int | myNumIDs_ |
double * | myCoefs_ |
int * | nonlocalIDs_ |
int * | nonlocalElementSize_ |
int | numNonlocalIDs_ |
int | allocatedNonlocalLength_ |
double ** | nonlocalCoefs_ |
unsigned char | last_edit |
Keep track of whether the last write operation on this vector was nothing (0) or a sum (1) or an add (2), so we can decide how to do the GlobalAssemble() More... | |
bool | ignoreNonLocalEntries_ |
This class provides a nice interface to the Trilinos Epetra_Vector object.
All overridden virtual functions are documented in numeric_vector.h.
Definition at line 65 of file trilinos_epetra_vector.h.
|
protectedinherited |
Data structure to log the information.
The log is identified by the class name.
Definition at line 119 of file reference_counter.h.
|
inlineexplicit |
Dummy-Constructor.
Dimension=0
Definition at line 414 of file trilinos_epetra_vector.h.
References libMesh::NumericVector< T >::_type, and libMesh::NumericVector< T >::type().
|
inlineexplicit |
Constructor.
Set dimension to n
and initialize all elements with zero.
Definition at line 436 of file trilinos_epetra_vector.h.
References libMesh::EpetraVector< T >::init(), and libMesh::NumericVector< T >::type().
|
inline |
Constructor.
Set local dimension to n_local
, the global dimension to n
, and initialize all elements with zero.
Definition at line 460 of file trilinos_epetra_vector.h.
References libMesh::EpetraVector< T >::init(), and libMesh::NumericVector< T >::type().
|
inline |
Constructor.
Set local dimension to n_local
, the global dimension to n
, but additionally reserve memory for the indices specified by the ghost
argument.
Definition at line 526 of file trilinos_epetra_vector.h.
References libMesh::EpetraVector< T >::init(), and libMesh::NumericVector< T >::type().
|
inline |
Constructor.
Creates a EpetraVector assuming you already have a valid Epetra Vec object. In this case, v is NOT destroyed by the EpetraVector constructor when this object goes out of scope. This allows ownership of v to remain with the original creator, and to simply provide additional functionality with the EpetraVector.
Definition at line 485 of file trilinos_epetra_vector.h.
References libMesh::NumericVector< T >::_is_closed, libMesh::NumericVector< T >::_is_initialized, libMesh::EpetraVector< T >::_map, libMesh::NumericVector< T >::_type, libMesh::EpetraVector< T >::_vec, libMesh::ParallelObject::comm(), libMesh::EpetraVector< T >::myCoefs_, libMesh::EpetraVector< T >::myFirstID_, libMesh::EpetraVector< T >::myNumIDs_, and libMesh::PARALLEL.
|
delete |
This class manages the lifetime of an Epetra_Vector manually, so we don't want to allow any automatic copy/move functions to be generated, and we can't default the destructor.
|
delete |
|
inlinevirtual |
Definition at line 562 of file trilinos_epetra_vector.h.
|
overridevirtual |
Sets \( u_i \leftarrow |u_i| \) for each entry in the vector.
Implements libMesh::NumericVector< T >.
Definition at line 325 of file trilinos_epetra_vector.C.
|
overridevirtual |
Adds value
to the vector entry specified by i
.
Note that library implementations of this method are thread safe, e.g. we will lock _numeric_vector_mutex
before writing to the vector
Implements libMesh::NumericVector< T >.
Definition at line 214 of file trilinos_epetra_vector.C.
References value.
|
overridevirtual |
Adds s
to each entry of the vector, \( u_i \leftarrow u_i + s \).
Implements libMesh::NumericVector< T >.
Definition at line 271 of file trilinos_epetra_vector.C.
|
overridevirtual |
Adds v
to this
, \( \vec{u} \leftarrow \vec{u} + \vec{v} \).
Equivalent to calling operator+=()
.
Implements libMesh::NumericVector< T >.
Definition at line 285 of file trilinos_epetra_vector.C.
|
overridevirtual |
Vector addition with a scalar multiple, \( \vec{u} \leftarrow \vec{u} + a\vec{v} \).
Equivalent to calling operator+=()
.
Implements libMesh::NumericVector< T >.
Definition at line 292 of file trilinos_epetra_vector.C.
References libMesh::EpetraVector< T >::_vec, and libMesh::EpetraVector< T >::size().
|
overridevirtual |
Computes \( \vec{u} \leftarrow \vec{u} + \vec{v} \), where v
is a pointer and each dof_indices
[i] specifies where to add value v
[i].
This should be overridden in subclasses for efficiency. Note that library implementations of this method are thread safe
Reimplemented from libMesh::NumericVector< T >.
Definition at line 230 of file trilinos_epetra_vector.C.
References libMesh::numeric_trilinos_cast().
|
overridevirtual |
Computes \( \vec{u} \leftarrow \vec{u} + A \vec{v} \), i.e.
adds the product of a SparseMatrix
A
and a NumericVector
v
to this
.
Implements libMesh::NumericVector< T >.
Definition at line 245 of file trilinos_epetra_vector.C.
References libMesh::EpetraVector< T >::_vec, and libMesh::EpetraVector< T >::zero_clone().
|
inlineinherited |
Computes \( \vec{u} \leftarrow \vec{u} + \vec{v} \), where v
is a std::vector and each dof_indices
[i] specifies where to add value v
[i].
This method is guaranteed to be thread safe as long as library implementations of NumericVector
are used
Definition at line 959 of file numeric_vector.h.
|
inherited |
Computes \( \vec{u} \leftarrow \vec{u} + \vec{v} \), where v
is a NumericVector and each dof_indices
[i] specifies where to add value v(i)
.
This method is guaranteed to be thread-safe as long as library implementations of NumericVector
are used
Definition at line 660 of file numeric_vector.C.
|
inlineinherited |
Computes \( \vec{u} \leftarrow \vec{u} + \vec{v} \), where v
is a DenseVector and each dof_indices
[i] specifies where to add value v(i)
.
This method is guaranteed to be thread safe as long as library implementations of NumericVector
are used
Definition at line 971 of file numeric_vector.h.
|
inherited |
Computes \( \vec{u} \leftarrow \vec{u} + A \vec{v} \), i.e.
adds the product of a ShellMatrix
A
and a NumericVector
v
to this
.
Definition at line 674 of file numeric_vector.C.
|
overridevirtual |
Computes \( \vec{u} \leftarrow \vec{u} + A^T \vec{v} \), i.e.
adds the product of the transpose of a SparseMatrix
A
and a NumericVector
v
to this
.
Implements libMesh::NumericVector< T >.
Definition at line 262 of file trilinos_epetra_vector.C.
|
staticinherited |
Builds a NumericVector
on the processors in communicator comm
using the linear solver package specified by solver_package
.
Definition at line 61 of file numeric_vector.C.
Referenced by libMesh::ExactSolution::_compute_error(), libMesh::UniformRefinementEstimator::_estimate_error(), libMesh::System::add_vector(), libMesh::TransientRBConstruction::allocate_data_structures(), libMesh::RBConstruction::allocate_data_structures(), libMesh::TransientRBConstruction::assemble_affine_expansion(), libMesh::AdvectionSystem::assemble_claw_rhs(), libMesh::EquationSystems::build_parallel_elemental_solution_vector(), libMesh::EquationSystems::build_parallel_solution_vector(), libMesh::System::calculate_norm(), libMesh::RBConstruction::compute_Fq_representor_innerprods(), libMesh::RBConstruction::compute_output_dual_innerprods(), libMesh::RBConstruction::compute_residual_dual_norm_slow(), libMesh::DiagonalMatrix< T >::DiagonalMatrix(), libMesh::AdjointRefinementEstimator::estimate_error(), libMesh::ExactErrorEstimator::estimate_error(), libMesh::CondensedEigenSystem::get_eigenpair(), libMesh::StaticCondensation::init(), main(), libMesh::TransientRBConstruction::mass_matrix_scaled_matvec(), libMesh::DofMap::process_mesh_constraint_rows(), libMesh::InterMeshProjection::project_system_vectors(), libMesh::RBEvaluation::read_in_vectors_from_multiple_files(), libMesh::TransientRBConstruction::read_riesz_representors_from_files(), libMesh::RBConstruction::read_riesz_representors_from_files(), OverlappingAlgebraicGhostingTest::run_ghosting_test(), OverlappingCouplingGhostingTest::run_sparsity_pattern_test(), libMesh::TransientRBConstruction::set_error_temporal_data(), libMesh::ClawSystem::solve_conservation_law(), ConstraintOperatorTest::test1DCoarseningOperator(), MeshfunctionDFEM::test_mesh_function_dfem(), MeshfunctionDFEM::test_mesh_function_dfem_grad(), MeshFunctionTest::test_p_level(), DiagonalMatrixTest::testNumerics(), SystemsTest::testProjectCubeWithMeshFunction(), libMesh::RBConstruction::train_reduced_basis_with_POD(), libMesh::MeshFunctionSolutionTransfer::transfer(), libMesh::TransientRBConstruction::truth_assembly(), libMesh::RBConstruction::truth_assembly(), libMesh::TransientRBConstruction::update_RB_initial_condition_all_N(), libMesh::TransientRBConstruction::update_RB_system_matrices(), libMesh::RBConstruction::update_RB_system_matrices(), libMesh::TransientRBConstruction::update_residual_terms(), and libMesh::RBConstruction::update_residual_terms().
|
inlineoverridevirtualnoexcept |
clear() is called from the destructor, so it should not throw.
Reimplemented from libMesh::NumericVector< T >.
Definition at line 676 of file trilinos_epetra_vector.h.
References libMesh::libMeshPrivateData::_is_initialized, and libMesh::initialized().
|
inlineoverridevirtual |
Implements libMesh::NumericVector< T >.
Definition at line 722 of file trilinos_epetra_vector.h.
References libMesh::AUTOMATIC.
|
inlineoverridevirtual |
Calls the NumericVector's internal assembly routines, ensuring that the values are consistent across processors.
Implements libMesh::NumericVector< T >.
Definition at line 652 of file trilinos_epetra_vector.h.
References libMesh::initialized(), and libMesh::libmesh_assert().
Referenced by libMesh::EpetraVector< T >::localize().
|
inlinevirtualinherited |
true
if the vector is closed and ready for computation, false otherwise. Definition at line 182 of file numeric_vector.h.
Referenced by libMesh::System::add_vector(), libMesh::PetscVector< libMesh::Number >::localize(), libMesh::DofMap::max_constraint_error(), libMesh::EigenSparseVector< T >::operator=(), libMesh::LaspackVector< T >::operator=(), and libMesh::PetscVector< libMesh::Number >::operator=().
|
inlineinherited |
Parallel::Communicator
object used by this mesh. Definition at line 97 of file parallel_object.h.
References libMesh::ParallelObject::_communicator.
Referenced by libMesh::__libmesh_petsc_diff_solver_jacobian(), libMesh::__libmesh_petsc_diff_solver_monitor(), libMesh::__libmesh_petsc_diff_solver_residual(), libMesh::__libmesh_tao_equality_constraints(), libMesh::__libmesh_tao_equality_constraints_jacobian(), libMesh::__libmesh_tao_gradient(), libMesh::__libmesh_tao_hessian(), libMesh::__libmesh_tao_inequality_constraints(), libMesh::__libmesh_tao_inequality_constraints_jacobian(), libMesh::__libmesh_tao_objective(), libMesh::MeshRefinement::_coarsen_elements(), libMesh::ExactSolution::_compute_error(), libMesh::UniformRefinementEstimator::_estimate_error(), libMesh::Partitioner::_find_global_index_by_pid_map(), libMesh::BoundaryInfo::_find_id_maps(), libMesh::PetscLinearSolver< Number >::_petsc_shell_matrix_get_diagonal(), libMesh::SlepcEigenSolver< libMesh::Number >::_petsc_shell_matrix_get_diagonal(), libMesh::PetscLinearSolver< Number >::_petsc_shell_matrix_mult(), libMesh::SlepcEigenSolver< libMesh::Number >::_petsc_shell_matrix_mult(), libMesh::PetscLinearSolver< Number >::_petsc_shell_matrix_mult_add(), libMesh::MeshRefinement::_refine_elements(), libMesh::MeshRefinement::_smooth_flags(), libMesh::DofMap::add_constraints_to_send_list(), add_cube_convex_hull_to_mesh(), libMesh::PetscDMWrapper::add_dofs_helper(), libMesh::PetscDMWrapper::add_dofs_to_section(), libMesh::TransientRBConstruction::add_IC_to_RB_space(), libMesh::RBEIMEvaluation::add_interpolation_data(), libMesh::CondensedEigenSystem::add_matrices(), libMesh::EigenSystem::add_matrices(), libMesh::System::add_matrix(), libMesh::RBConstruction::add_scaled_matrix_and_vector(), libMesh::System::add_variable(), libMesh::System::add_variables(), libMesh::System::add_vector(), libMesh::MeshTools::Modification::all_tri(), libMesh::LaplaceMeshSmoother::allgather_graph(), libMesh::DofMap::allgather_recursive_constraints(), libMesh::TransientRBConstruction::allocate_data_structures(), libMesh::RBConstruction::allocate_data_structures(), libMesh::TransientRBConstruction::assemble_affine_expansion(), libMesh::AdvectionSystem::assemble_claw_rhs(), libMesh::FEMSystem::assemble_qoi(), libMesh::Nemesis_IO::assert_symmetric_cmaps(), libMesh::MeshCommunication::assign_global_indices(), libMesh::Partitioner::assign_partitioning(), libMesh::MeshTools::Generation::build_extrusion(), libMesh::Partitioner::build_graph(), libMesh::BoundaryInfo::build_node_list_from_side_list(), libMesh::EquationSystems::build_parallel_elemental_solution_vector(), libMesh::EquationSystems::build_parallel_solution_vector(), libMesh::PetscDMWrapper::build_section(), libMesh::PetscDMWrapper::build_sf(), libMesh::MeshBase::cache_elem_data(), libMesh::System::calculate_norm(), libMesh::DofMap::check_dirichlet_bcid_consistency(), libMesh::RBConstruction::compute_Fq_representor_innerprods(), libMesh::RBConstruction::compute_max_error_bound(), libMesh::Nemesis_IO_Helper::compute_num_global_elem_blocks(), libMesh::Nemesis_IO_Helper::compute_num_global_nodesets(), libMesh::Nemesis_IO_Helper::compute_num_global_sidesets(), libMesh::RBConstruction::compute_output_dual_innerprods(), libMesh::RBConstruction::compute_residual_dual_norm_slow(), libMesh::RBSCMConstruction::compute_SCM_bounds_on_training_set(), libMesh::DofMap::computed_sparsity_already(), libMesh::Problem_Interface::computeF(), libMesh::Problem_Interface::computeJacobian(), libMesh::Problem_Interface::computePreconditioner(), libMesh::ContinuationSystem::ContinuationSystem(), libMesh::MeshBase::copy_constraint_rows(), libMesh::ExodusII_IO::copy_elemental_solution(), libMesh::ExodusII_IO::copy_nodal_solution(), libMesh::ExodusII_IO::copy_scalar_solution(), libMesh::CondensedEigenSystem::copy_super_to_sub(), libMesh::MeshTools::correct_node_proc_ids(), libMesh::MeshTools::create_bounding_box(), libMesh::DofMap::create_dof_constraints(), libMesh::MeshTools::create_nodal_bounding_box(), libMesh::MeshRefinement::create_parent_error_vector(), libMesh::MeshTools::create_processor_bounding_box(), libMesh::MeshTools::create_subdomain_bounding_box(), libMesh::PetscMatrix< T >::create_submatrix_nosort(), create_wrapped_function(), libMesh::MeshCommunication::delete_remote_elements(), libMesh::RBEIMEvaluation::distribute_bfs(), DMlibMeshFunction(), DMlibMeshJacobian(), DMlibMeshSetSystem_libMesh(), DMVariableBounds_libMesh(), libMesh::DTKSolutionTransfer::DTKSolutionTransfer(), libMesh::MeshRefinement::eliminate_unrefined_patches(), libMesh::RBEIMConstruction::enrich_eim_approximation_on_interiors(), libMesh::RBEIMConstruction::enrich_eim_approximation_on_nodes(), libMesh::RBEIMConstruction::enrich_eim_approximation_on_sides(), libMesh::TransientRBConstruction::enrich_RB_space(), libMesh::EpetraVector< T >::EpetraVector(), AssembleOptimization::equality_constraints(), libMesh::PatchRecoveryErrorEstimator::estimate_error(), libMesh::WeightedPatchRecoveryErrorEstimator::estimate_error(), libMesh::AdjointRefinementEstimator::estimate_error(), libMesh::ExactErrorEstimator::estimate_error(), libMesh::MeshRefinement::flag_elements_by_elem_fraction(), libMesh::MeshRefinement::flag_elements_by_error_fraction(), libMesh::MeshRefinement::flag_elements_by_error_tolerance(), libMesh::MeshRefinement::flag_elements_by_mean_stddev(), libMesh::MeshRefinement::flag_elements_by_nelem_target(), libMesh::RBEIMEvaluation::gather_bfs(), libMesh::DofMap::gather_constraints(), libMesh::MeshfreeInterpolation::gather_remote_data(), libMesh::CondensedEigenSystem::get_eigenpair(), libMesh::RBEIMEvaluation::get_eim_basis_function_node_value(), libMesh::RBEIMEvaluation::get_eim_basis_function_side_value(), libMesh::RBEIMEvaluation::get_eim_basis_function_value(), libMesh::MeshBase::get_info(), libMesh::System::get_info(), libMesh::DofMap::get_info(), libMesh::RBEIMEvaluation::get_interior_basis_functions_as_vecs(), libMesh::ImplicitSystem::get_linear_solver(), libMesh::RBEIMConstruction::get_max_abs_value(), libMesh::RBEIMConstruction::get_node_max_abs_value(), libMesh::RBEIMEvaluation::get_parametrized_function_node_value(), libMesh::RBEIMEvaluation::get_parametrized_function_side_value(), libMesh::RBEIMEvaluation::get_parametrized_function_value(), libMesh::RBEIMConstruction::get_random_point(), AssembleOptimization::inequality_constraints(), AssembleOptimization::inequality_constraints_jacobian(), libMesh::LocationMap< T >::init(), libMesh::TimeSolver::init(), libMesh::StaticCondensation::init(), libMesh::SystemSubsetBySubdomain::init(), libMesh::PetscDMWrapper::init_and_attach_petscdm(), libMesh::AdvectionSystem::init_data(), libMesh::ClawSystem::init_data(), libMesh::PetscDMWrapper::init_petscdm(), libMesh::ExodusII_IO_Helper::initialize(), libMesh::OptimizationSystem::initialize_equality_constraints_storage(), libMesh::OptimizationSystem::initialize_inequality_constraints_storage(), libMesh::RBEIMConstruction::initialize_parametrized_functions_in_training_set(), libMesh::RBEIMConstruction::inner_product(), integrate_function(), libMesh::MeshTools::libmesh_assert_consistent_distributed(), libMesh::MeshTools::libmesh_assert_consistent_distributed_nodes(), libMesh::MeshTools::libmesh_assert_contiguous_dof_ids(), libMesh::MeshTools::libmesh_assert_equal_connectivity(), libMesh::MeshTools::libmesh_assert_equal_points(), libMesh::MeshTools::libmesh_assert_parallel_consistent_new_node_procids(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Elem >(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Node >(), libMesh::MeshTools::libmesh_assert_topology_consistent_procids< Node >(), libMesh::MeshTools::libmesh_assert_valid_boundary_ids(), libMesh::MeshTools::libmesh_assert_valid_constraint_rows(), libMesh::MeshTools::libmesh_assert_valid_dof_ids(), libMesh::MeshTools::libmesh_assert_valid_neighbors(), libMesh::DistributedMesh::libmesh_assert_valid_parallel_flags(), libMesh::DistributedMesh::libmesh_assert_valid_parallel_object_ids(), libMesh::DistributedMesh::libmesh_assert_valid_parallel_p_levels(), libMesh::MeshTools::libmesh_assert_valid_refinement_flags(), libMesh::MeshTools::libmesh_assert_valid_unique_ids(), libMesh::libmesh_petsc_linesearch_shellfunc(), libMesh::libmesh_petsc_preconditioner_apply(), libMesh::libmesh_petsc_recalculate_monitor(), libMesh::libmesh_petsc_snes_fd_residual(), libMesh::libmesh_petsc_snes_jacobian(), libMesh::libmesh_petsc_snes_mffd_interface(), libMesh::libmesh_petsc_snes_mffd_residual(), libMesh::libmesh_petsc_snes_postcheck(), libMesh::libmesh_petsc_snes_precheck(), libMesh::libmesh_petsc_snes_residual(), libMesh::libmesh_petsc_snes_residual_helper(), libMesh::MeshRefinement::limit_level_mismatch_at_edge(), libMesh::MeshRefinement::limit_level_mismatch_at_node(), libMesh::MeshRefinement::limit_overrefined_boundary(), libMesh::MeshRefinement::limit_underrefined_boundary(), libMesh::LinearImplicitSystem::LinearImplicitSystem(), main(), libMesh::MeshRefinement::make_coarsening_compatible(), libMesh::MeshCommunication::make_elems_parallel_consistent(), libMesh::MeshRefinement::make_flags_parallel_consistent(), libMesh::MeshCommunication::make_new_node_proc_ids_parallel_consistent(), libMesh::MeshCommunication::make_new_nodes_parallel_consistent(), libMesh::MeshCommunication::make_node_bcids_parallel_consistent(), libMesh::MeshCommunication::make_node_ids_parallel_consistent(), libMesh::MeshCommunication::make_node_proc_ids_parallel_consistent(), libMesh::MeshCommunication::make_node_unique_ids_parallel_consistent(), libMesh::MeshCommunication::make_nodes_parallel_consistent(), libMesh::MeshCommunication::make_p_levels_parallel_consistent(), libMesh::MeshRefinement::make_refinement_compatible(), libMesh::TransientRBConstruction::mass_matrix_scaled_matvec(), libMesh::FEMSystem::mesh_position_set(), libMesh::TriangulatorInterface::MeshedHole::MeshedHole(), LinearElasticityWithContact::move_mesh(), libMesh::DistributedMesh::n_active_elem(), libMesh::MeshTools::n_active_levels(), libMesh::BoundaryInfo::n_boundary_conds(), libMesh::MeshTools::n_connected_components(), libMesh::DofMap::n_constrained_dofs(), libMesh::MeshBase::n_constraint_rows(), libMesh::DofMap::n_dofs(), libMesh::DofMap::n_dofs_per_processor(), libMesh::BoundaryInfo::n_edge_conds(), libMesh::CondensedEigenSystem::n_global_non_condensed_dofs(), libMesh::MeshTools::n_levels(), MixedOrderTest::n_neighbor_links(), libMesh::BoundaryInfo::n_nodeset_conds(), libMesh::SparsityPattern::Build::n_nonzeros(), libMesh::MeshTools::n_p_levels(), libMesh::BoundaryInfo::n_shellface_conds(), libMesh::RBEIMEvaluation::node_distribute_bfs(), libMesh::RBEIMEvaluation::node_gather_bfs(), libMesh::RBEIMConstruction::node_inner_product(), libMesh::MeshBase::operator==(), libMesh::DistributedMesh::parallel_max_elem_id(), libMesh::DistributedMesh::parallel_max_node_id(), libMesh::ReplicatedMesh::parallel_max_unique_id(), libMesh::DistributedMesh::parallel_max_unique_id(), libMesh::DistributedMesh::parallel_n_elem(), libMesh::DistributedMesh::parallel_n_nodes(), libMesh::SparsityPattern::Build::parallel_sync(), libMesh::BoundaryInfo::parallel_sync_node_ids(), libMesh::BoundaryInfo::parallel_sync_side_ids(), libMesh::MeshTools::paranoid_n_levels(), libMesh::Partitioner::partition(), libMesh::Partitioner::partition_unpartitioned_elements(), libMesh::petsc_auto_fieldsplit(), libMesh::System::point_gradient(), libMesh::System::point_hessian(), libMesh::System::point_value(), libMesh::MeshBase::prepare_for_use(), libMesh::MeshBase::print_constraint_rows(), libMesh::DofMap::print_dof_constraints(), libMesh::DofMap::process_mesh_constraint_rows(), libMesh::Partitioner::processor_pairs_to_interface_nodes(), libMesh::InterMeshProjection::project_system_vectors(), FEMParameters::read(), libMesh::Nemesis_IO::read(), libMesh::XdrIO::read(), libMesh::EquationSystems::read(), libMesh::ExodusII_IO::read_header(), libMesh::CheckpointIO::read_header(), libMesh::XdrIO::read_header(), libMesh::System::read_header(), libMesh::RBEIMEvaluation::read_in_interior_basis_functions(), libMesh::RBEIMEvaluation::read_in_node_basis_functions(), libMesh::RBEIMEvaluation::read_in_side_basis_functions(), libMesh::RBEvaluation::read_in_vectors_from_multiple_files(), libMesh::System::read_legacy_data(), libMesh::TransientRBConstruction::read_riesz_representors_from_files(), libMesh::RBConstruction::read_riesz_representors_from_files(), libMesh::System::read_SCALAR_dofs(), libMesh::XdrIO::read_serialized_bc_names(), libMesh::XdrIO::read_serialized_bcs_helper(), libMesh::System::read_serialized_blocked_dof_objects(), libMesh::XdrIO::read_serialized_connectivity(), libMesh::XdrIO::read_serialized_nodes(), libMesh::XdrIO::read_serialized_nodesets(), libMesh::XdrIO::read_serialized_subdomain_names(), libMesh::System::read_serialized_vector(), libMesh::Nemesis_IO_Helper::read_var_names_impl(), libMesh::MeshBase::recalculate_n_partitions(), libMesh::MeshRefinement::refine_and_coarsen_elements(), libMesh::SimplexRefiner::refine_via_edges(), libMesh::StaticCondensationDofMap::reinit(), libMesh::DistributedMesh::renumber_dof_objects(), libMesh::DistributedMesh::renumber_nodes_and_elements(), LinearElasticityWithContact::residual_and_jacobian(), OverlappingAlgebraicGhostingTest::run_ghosting_test(), OverlappingCouplingGhostingTest::run_sparsity_pattern_test(), scale_mesh_and_plot(), libMesh::DofMap::scatter_constraints(), libMesh::CheckpointIO::select_split_config(), libMesh::GenericProjector< FFunctor, GFunctor, FValue, ProjectionAction >::send_and_insert_dof_values(), libMesh::TransientRBConstruction::set_error_temporal_data(), libMesh::Partitioner::set_interface_node_processor_ids_BFS(), libMesh::Partitioner::set_interface_node_processor_ids_linear(), libMesh::Partitioner::set_interface_node_processor_ids_petscpartitioner(), libMesh::Partitioner::set_node_processor_ids(), libMesh::DofMap::set_nonlocal_dof_objects(), libMesh::Partitioner::set_parent_processor_ids(), libMesh::PetscDMWrapper::set_point_range_in_section(), libMesh::PetscDiffSolver::setup_petsc_data(), libMesh::RBEIMEvaluation::side_distribute_bfs(), libMesh::RBEIMEvaluation::side_gather_bfs(), libMesh::RBEIMConstruction::side_inner_product(), libMesh::Partitioner::single_partition(), libMesh::LaplaceMeshSmoother::smooth(), libMesh::VariationalMeshSmoother::smooth(), libMesh::ClawSystem::solve_conservation_law(), libMesh::split_mesh(), libMesh::RBEIMConstruction::store_eim_solutions_for_training_set(), libMesh::MeshBase::subdomain_ids(), libMesh::BoundaryInfo::sync(), ConstraintOperatorTest::test1DCoarseningNewNodes(), ConstraintOperatorTest::test1DCoarseningOperator(), libMesh::MeshRefinement::test_level_one(), MeshfunctionDFEM::test_mesh_function_dfem(), MeshfunctionDFEM::test_mesh_function_dfem_grad(), MeshFunctionTest::test_p_level(), libMesh::MeshRefinement::test_unflagged(), DofMapTest::testBadElemFECombo(), SystemsTest::testBlockRestrictedVarNDofs(), BoundaryInfoTest::testBoundaryOnChildrenErrors(), VolumeTest::testC0PolygonMethods(), VolumeTest::testC0PolyhedronMethods(), ConstraintOperatorTest::testCoreform(), ConnectedComponentsTest::testEdge(), MeshInputTest::testExodusIGASidesets(), MeshTriangulationTest::testFoundCenters(), PointLocatorTest::testLocator(), BoundaryInfoTest::testMesh(), PointLocatorTest::testPlanar(), MeshTriangulationTest::testPoly2TriRefinementBase(), SystemsTest::testProjectCubeWithMeshFunction(), BoundaryInfoTest::testRenumber(), CheckpointIOTest::testSplitter(), MeshInputTest::testTetgenIO(), MeshTriangulationTest::testTriangulatorInterp(), MeshTriangulationTest::testTriangulatorMeshedHoles(), MeshTriangulationTest::testTriangulatorRoundHole(), libMesh::MeshTools::total_weight(), libMesh::RBConstruction::train_reduced_basis_with_POD(), libMesh::MeshFunctionSolutionTransfer::transfer(), libMesh::MeshfreeSolutionTransfer::transfer(), libMesh::Poly2TriTriangulator::triangulate(), libMesh::TransientRBConstruction::truth_assembly(), libMesh::RBConstruction::truth_assembly(), libMesh::MeshRefinement::uniformly_coarsen(), update_current_local_solution(), libMesh::TransientRBConstruction::update_RB_initial_condition_all_N(), libMesh::TransientRBConstruction::update_RB_system_matrices(), libMesh::RBConstruction::update_RB_system_matrices(), libMesh::TransientRBConstruction::update_residual_terms(), libMesh::RBConstruction::update_residual_terms(), libMesh::MeshTools::volume(), libMesh::STLIO::write(), libMesh::NameBasedIO::write(), libMesh::XdrIO::write(), libMesh::VTKIO::write_nodal_data(), libMesh::RBEIMEvaluation::write_out_interior_basis_functions(), libMesh::RBEIMEvaluation::write_out_node_basis_functions(), libMesh::RBEIMEvaluation::write_out_side_basis_functions(), libMesh::RBEvaluation::write_out_vectors(), libMesh::TransientRBConstruction::write_riesz_representors_to_files(), libMesh::RBConstruction::write_riesz_representors_to_files(), libMesh::System::write_SCALAR_dofs(), libMesh::XdrIO::write_serialized_bcs_helper(), libMesh::System::write_serialized_blocked_dof_objects(), libMesh::XdrIO::write_serialized_connectivity(), libMesh::XdrIO::write_serialized_nodes(), libMesh::XdrIO::write_serialized_nodesets(), libMesh::RBDataSerialization::RBEvaluationSerialization::write_to_file(), libMesh::RBDataSerialization::TransientRBEvaluationSerialization::write_to_file(), libMesh::RBDataSerialization::RBEIMEvaluationSerialization::write_to_file(), and libMesh::RBDataSerialization::RBSCMEvaluationSerialization::write_to_file().
|
virtualinherited |
-1
when this
is equivalent to other_vector
(up to the given threshold
), or the first index where abs
(a[i]-b[i]) exceeds the threshold. Definition at line 153 of file numeric_vector.C.
|
inherited |
v
are able to be read for global operations with one-another Definition at line 692 of file numeric_vector.C.
|
overridevirtual |
Negates the imaginary component of each entry in the vector.
Implements libMesh::NumericVector< T >.
Definition at line 206 of file trilinos_epetra_vector.C.
|
inlinevirtualinherited |
Fills in subvector
from this vector using the indices in rows
.
Similar to the create_submatrix()
routine for the SparseMatrix class, it is currently only implemented for PetscVectors. The boolean parameter communicates whether the supplied vector of rows corresponds to all the rows that should be used in the subvector's index set, e.g. whether the rows correspond to the global collective. If the rows supplied are only the local indices, then the boolean parameter should be set to false
Reimplemented in libMesh::PetscVector< T >.
Definition at line 762 of file numeric_vector.h.
Referenced by libMesh::StaticCondensation::forward_elimination().
|
private |
Definition at line 906 of file trilinos_epetra_vector.C.
|
staticinherited |
Definition at line 100 of file reference_counter.C.
References libMesh::ReferenceCounter::_enable_print_counter.
|
overridevirtual |
v
.Uses the complex-conjugate of v
in the complex-valued case.
Implements libMesh::NumericVector< T >.
Definition at line 332 of file trilinos_epetra_vector.C.
References libMesh::EpetraVector< T >::_vec.
|
inlinevirtualinherited |
|
staticinherited |
Methods to enable/disable the reference counter output from print_info()
Definition at line 94 of file reference_counter.C.
References libMesh::ReferenceCounter::_enable_print_counter.
|
private |
Definition at line 878 of file trilinos_epetra_vector.C.
References libMesh::EpetraVector< T >::_vec, libMesh::EpetraVector< T >::allocatedNonlocalLength_, libMesh::EpetraVector< T >::nonlocalCoefs_, libMesh::EpetraVector< T >::nonlocalElementSize_, libMesh::EpetraVector< T >::nonlocalIDs_, and libMesh::EpetraVector< T >::numNonlocalIDs_.
|
inlineoverridevirtual |
0
. Implements libMesh::NumericVector< T >.
Definition at line 755 of file trilinos_epetra_vector.h.
References libMesh::initialized(), and libMesh::libmesh_assert().
|
inlinevirtualinherited |
Access multiple components at once.
values
will not be reallocated; it should already have enough space. The default implementation calls operator()
for each index, but some implementations may supply faster methods here.
Reimplemented in libMesh::PetscVector< T >.
Definition at line 930 of file numeric_vector.h.
Referenced by libMesh::UniformRefinementEstimator::_estimate_error(), libMesh::EquationSystems::build_parallel_solution_vector(), compute_residual(), libMesh::JumpErrorEstimator::estimate_error(), libMesh::AdjointRefinementEstimator::estimate_error(), libMesh::HDGProblem::jacobian(), libMesh::FEMContext::pre_fe_reinit(), libMesh::System::project_vector(), libMesh::System::request_vector(), libMesh::HDGProblem::residual(), libMesh::System::restrict_vectors(), libMesh::StaticCondensation::set_local_vectors(), libMesh::System::solve_for_unconstrained_dofs(), and libMesh::System::vector_name().
|
inlineinherited |
Access multiple components at once.
values
will be resized, if necessary, and filled. The default implementation calls operator()
for each index, but some implementations may supply faster methods here.
Definition at line 944 of file numeric_vector.h.
|
staticinherited |
Gets a string containing the reference information.
Definition at line 47 of file reference_counter.C.
References libMesh::ReferenceCounter::_counts, and libMesh::Quality::name().
Referenced by libMesh::ReferenceCounter::print_info().
|
inlinevirtualinherited |
Creates a view into this vector using the indices in rows
.
Similar to the create_submatrix()
routine for the SparseMatrix class, it is currently only implemented for PetscVectors.
Reimplemented in libMesh::PetscVector< T >, and libMesh::PetscVector< libMesh::Number >.
Definition at line 776 of file numeric_vector.h.
Referenced by libMesh::StaticCondensation::apply(), libMesh::CondensedEigenSystem::copy_sub_to_super(), and libMesh::CondensedEigenSystem::copy_super_to_sub().
|
virtualinherited |
-1
when this
is equivalent to other_vector
(up to the given global relative threshold
), or the first index where abs
(a[i]-b[i])/max_j(a[j],b[j]) exceeds the threshold. Definition at line 211 of file numeric_vector.C.
|
private |
Gather any overlapping/shared data into the non-overlapping partitioning defined by the Map that was passed to this vector at construction time.
Data imported from other processors is stored on the owning processor with a "sumInto" or accumulate operation. This is a collective method – every processor must enter it before any will complete it.
Definition at line 832 of file trilinos_epetra_vector.C.
|
inlineprotectednoexceptinherited |
Increments the construction counter.
Should be called in the constructor of any derived class that will be reference counted.
Definition at line 183 of file reference_counter.h.
References libMesh::err, libMesh::BasicOStreamProxy< charT, traits >::get(), libMesh::Quality::name(), and libMesh::Threads::spin_mtx.
Referenced by libMesh::ReferenceCountedObject< RBParametrized >::ReferenceCountedObject().
|
inlineprotectednoexceptinherited |
Increments the destruction counter.
Should be called in the destructor of any derived class that will be reference counted.
Definition at line 207 of file reference_counter.h.
References libMesh::err, libMesh::BasicOStreamProxy< charT, traits >::get(), libMesh::Quality::name(), and libMesh::Threads::spin_mtx.
Referenced by libMesh::ReferenceCountedObject< RBParametrized >::~ReferenceCountedObject().
|
inlineoverridevirtual |
Change the dimension of the vector to n
.
The reserved memory for this vector remains unchanged if possible. If n==0
, all memory is freed. Therefore, if you want to resize the vector and release the memory not needed, you have to first call init(0)
and then init(n)
. This behaviour is analogous to that of the STL containers.
On fast==false
, the vector is filled by zeros.
Implements libMesh::NumericVector< T >.
Definition at line 571 of file trilinos_epetra_vector.h.
References libMesh::libMeshPrivateData::_is_initialized, libMesh::AUTOMATIC, libMesh::GHOSTED, libMesh::libmesh_assert(), libMesh::PARALLEL, libMesh::SERIAL, and libMesh::zero.
Referenced by libMesh::EpetraVector< T >::EpetraVector(), and libMesh::EpetraVector< T >::localize().
|
inlineoverridevirtual |
Call init()
with n_local = N.
Implements libMesh::NumericVector< T >.
Definition at line 641 of file trilinos_epetra_vector.h.
References libMesh::TriangleWrapper::init().
|
inlineoverridevirtual |
Create a vector that holds the local indices plus those specified in the ghost
argument.
Implements libMesh::NumericVector< T >.
Definition at line 627 of file trilinos_epetra_vector.h.
References libMesh::TriangleWrapper::init().
|
overridevirtual |
Creates a vector that has the same dimension and storage type as other
, including ghost dofs.
Implements libMesh::NumericVector< T >.
Definition at line 552 of file trilinos_epetra_vector.h.
References libMesh::TriangleWrapper::init(), libMesh::NumericVector< T >::local_size(), libMesh::NumericVector< T >::size(), and libMesh::NumericVector< T >::type().
|
inlinevirtualinherited |
true
if the vector has been initialized, false otherwise. Definition at line 149 of file numeric_vector.h.
Referenced by libMesh::System::add_vector(), libMesh::ImplicitSystem::assemble(), libMesh::PetscVector< libMesh::Number >::create_subvector(), and libMesh::PetscVector< libMesh::Number >::init().
|
private |
Definition at line 730 of file trilinos_epetra_vector.C.
References value.
|
private |
Definition at line 773 of file trilinos_epetra_vector.C.
References libMesh::err.
|
private |
Definition at line 650 of file trilinos_epetra_vector.C.
References libMesh::libmesh_assert().
|
private |
Definition at line 687 of file trilinos_epetra_vector.C.
References libMesh::libmesh_assert().
|
overridevirtual |
Inserts the entries of v
in *this at the locations specified by v
.
Note that library implementations of this method are thread safe
Reimplemented from libMesh::NumericVector< T >.
Definition at line 304 of file trilinos_epetra_vector.C.
References libMesh::numeric_trilinos_cast().
|
inlineinherited |
Inserts the entries of v
in *this at the locations specified by v
.
This method is guaranteed to be thread-safe as long as library implementations of NumericVector
are used
Definition at line 983 of file numeric_vector.h.
|
inherited |
Inserts the entries of v
in *this at the locations specified by v
.
This method is guaranteed to be thread-safe as long as library implementations of NumericVector
are used
Definition at line 140 of file numeric_vector.C.
|
inlineinherited |
Inserts the entries of v
in *this at the locations specified by v
.
This method is guaranteed to be thread-safe as long as library implementations of NumericVector
are used
Definition at line 995 of file numeric_vector.h.
|
inlineinherited |
Inserts the entries of v
in *this at the locations specified by v
.
This method is guaranteed to be thread-safe as long as library implementations of NumericVector
are used
Definition at line 1007 of file numeric_vector.h.
|
overridevirtual |
Implements libMesh::NumericVector< T >.
Definition at line 69 of file trilinos_epetra_vector.C.
References libMesh::closed(), libMesh::libmesh_assert(), libMesh::Real, and value.
|
inherited |
this
. Definition at line 632 of file numeric_vector.C.
|
overridevirtual |
Implements libMesh::NumericVector< T >.
Definition at line 81 of file trilinos_epetra_vector.C.
References libMesh::closed(), libMesh::libmesh_assert(), libMesh::Real, and value.
|
inherited |
this
. Definition at line 616 of file numeric_vector.C.
|
inlineoverridevirtual |
size()
. Implements libMesh::NumericVector< T >.
Definition at line 766 of file trilinos_epetra_vector.h.
References libMesh::initialized(), and libMesh::libmesh_assert().
|
overridevirtual |
Implements libMesh::NumericVector< T >.
Definition at line 93 of file trilinos_epetra_vector.C.
References libMesh::closed(), libMesh::libmesh_assert(), libMesh::Real, and value.
|
virtualinherited |
-1
when this
is equivalent to other_vector
, (up to the given local relative threshold
), or the first index where abs
(a[i]-b[i])/max(a[i],b[i]) exceeds the threshold. Definition at line 181 of file numeric_vector.C.
|
inlineoverridevirtual |
index_stop
- index_start
. Implements libMesh::NumericVector< T >.
Definition at line 746 of file trilinos_epetra_vector.h.
References libMesh::initialized(), and libMesh::libmesh_assert().
|
overridevirtual |
Creates a copy of the global vector in the local vector v_local
.
Implements libMesh::NumericVector< T >.
Definition at line 532 of file trilinos_epetra_vector.C.
References libMesh::libmesh_assert().
Referenced by libMesh::EpetraVector< T >::localize().
|
overridevirtual |
Same, but fills a NumericVector<T>
instead of a std::vector
.
Implements libMesh::NumericVector< T >.
Definition at line 420 of file trilinos_epetra_vector.C.
References libMesh::EpetraVector< T >::_vec.
|
overridevirtual |
Creates a local vector v_local
containing only information relevant to this processor, as defined by the send_list
.
Implements libMesh::NumericVector< T >.
Definition at line 434 of file trilinos_epetra_vector.C.
|
overridevirtual |
Fill in the local std::vector "v_local" with the global indices given in "indices".
Example:
* On 4 procs *this = {a, b, c, d, e, f, g, h, i} is a parallel vector. * On each proc, the indices arrays are set up as: * proc0, indices = {1,2,4,5} * proc1, indices = {2,5,6,8} * proc2, indices = {2,3,6,7} * proc3, indices = {0,1,2,3} * * After calling this version of localize, the v_local vectors are: * proc0, v_local = {b,c,e,f} * proc1, v_local = {c,f,g,i} * proc2, v_local = {c,d,g,h} * proc3, v_local = {a,b,c,d} *
This function is useful in parallel I/O routines, when you have a parallel vector of solution values which you want to write a subset of.
Implements libMesh::NumericVector< T >.
Definition at line 456 of file trilinos_epetra_vector.C.
References libMesh::index_range().
|
overridevirtual |
Updates a local vector with selected values from neighboring processors, as defined by send_list
.
Implements libMesh::NumericVector< T >.
Definition at line 495 of file trilinos_epetra_vector.C.
References libMesh::EpetraVector< T >::close(), libMesh::EpetraVector< T >::init(), libMesh::EpetraVector< T >::localize(), libMesh::PARALLEL, and libMesh::EpetraVector< T >::set().
|
overridevirtual |
Creates a local copy of the global vector in v_local
only on processor proc_id
.
By default the data is sent to processor 0. This method is useful for outputting data from one processor.
Implements libMesh::NumericVector< T >.
Definition at line 555 of file trilinos_epetra_vector.C.
References libMesh::libmesh_assert().
|
inlineoverridevirtual |
Implements libMesh::NumericVector< T >.
Definition at line 804 of file trilinos_epetra_vector.h.
References libMesh::initialized(), libMesh::libmesh_assert(), and value.
|
inlineoverridevirtual |
Although we define numeric_index_type, and it is typically required that the NumericVector's underlying implementation's indices have size equal to sizeof(numeric_index_type), these two types can still have different signedness, which affects the maximum number of values which can be stored in the NumericVector.
Implements libMesh::NumericVector< T >.
Definition at line 844 of file trilinos_epetra_vector.h.
|
inlineoverridevirtual |
Implements libMesh::NumericVector< T >.
Definition at line 789 of file trilinos_epetra_vector.h.
References libMesh::initialized(), libMesh::libmesh_assert(), and value.
|
inlinestaticinherited |
Prints the number of outstanding (created, but not yet destroyed) objects.
Definition at line 85 of file reference_counter.h.
References libMesh::ReferenceCounter::_n_objects.
Referenced by libMesh::LibMeshInit::~LibMeshInit().
|
inlineinherited |
Definition at line 103 of file parallel_object.h.
References libMesh::ParallelObject::_communicator, libMesh::libmesh_assert(), and TIMPI::Communicator::size().
Referenced by libMesh::Partitioner::_find_global_index_by_pid_map(), libMesh::BoundaryInfo::_find_id_maps(), libMesh::DofMap::add_constraints_to_send_list(), libMesh::PetscDMWrapper::add_dofs_to_section(), libMesh::DistributedMesh::add_elem(), libMesh::DofMap::add_neighbors_to_send_list(), libMesh::DistributedMesh::add_node(), libMesh::System::add_vector(), libMesh::LaplaceMeshSmoother::allgather_graph(), libMesh::DofMap::allgather_recursive_constraints(), libMesh::FEMSystem::assembly(), libMesh::Nemesis_IO::assert_symmetric_cmaps(), libMesh::Partitioner::assign_partitioning(), libMesh::AztecLinearSolver< T >::AztecLinearSolver(), libMesh::Partitioner::build_graph(), libMesh::EquationSystems::build_parallel_elemental_solution_vector(), libMesh::DistributedMesh::clear(), libMesh::DistributedMesh::clear_elems(), libMesh::Nemesis_IO_Helper::compute_border_node_ids(), libMesh::Nemesis_IO_Helper::construct_nemesis_filename(), libMesh::UnstructuredMesh::copy_nodes_and_elements(), libMesh::ExodusII_IO::copy_scalar_solution(), libMesh::Nemesis_IO::copy_scalar_solution(), libMesh::UnstructuredMesh::create_pid_mesh(), libMesh::MeshTools::create_processor_bounding_box(), libMesh::DofMap::distribute_dofs(), libMesh::DofMap::distribute_scalar_dofs(), libMesh::DistributedMesh::DistributedMesh(), libMesh::EnsightIO::EnsightIO(), libMesh::RBEIMEvaluation::gather_bfs(), libMesh::MeshBase::get_info(), libMesh::StaticCondensation::init(), libMesh::SystemSubsetBySubdomain::init(), libMesh::PetscDMWrapper::init_petscdm(), libMesh::Nemesis_IO_Helper::initialize(), libMesh::ExodusII_IO_Helper::initialize(), libMesh::DistributedMesh::insert_elem(), libMesh::MeshTools::libmesh_assert_contiguous_dof_ids(), libMesh::MeshTools::libmesh_assert_parallel_consistent_new_node_procids(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Elem >(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Node >(), libMesh::MeshTools::libmesh_assert_topology_consistent_procids< Node >(), libMesh::MeshTools::libmesh_assert_valid_boundary_ids(), libMesh::MeshTools::libmesh_assert_valid_dof_ids(), libMesh::MeshTools::libmesh_assert_valid_neighbors(), libMesh::MeshTools::libmesh_assert_valid_refinement_flags(), libMesh::DofMap::local_variable_indices(), libMesh::MeshRefinement::make_coarsening_compatible(), libMesh::MeshBase::n_active_elem_on_proc(), libMesh::DofMap::n_dofs_per_processor(), libMesh::MeshBase::n_elem_on_proc(), libMesh::MeshBase::n_nodes_on_proc(), libMesh::RBEIMEvaluation::node_gather_bfs(), libMesh::Partitioner::partition(), libMesh::MeshBase::partition(), libMesh::Partitioner::partition_unpartitioned_elements(), libMesh::System::point_gradient(), libMesh::System::point_hessian(), libMesh::System::point_value(), libMesh::DofMap::prepare_send_list(), libMesh::MeshBase::print_constraint_rows(), libMesh::DofMap::print_dof_constraints(), libMesh::NameBasedIO::read(), libMesh::Nemesis_IO::read(), libMesh::CheckpointIO::read(), libMesh::CheckpointIO::read_connectivity(), libMesh::XdrIO::read_header(), libMesh::CheckpointIO::read_nodes(), libMesh::System::read_parallel_data(), libMesh::System::read_SCALAR_dofs(), libMesh::System::read_serialized_blocked_dof_objects(), libMesh::System::read_serialized_vector(), libMesh::DistributedMesh::renumber_dof_objects(), libMesh::Partitioner::repartition(), OverlappingFunctorTest::run_partitioner_test(), libMesh::DofMap::scatter_constraints(), libMesh::DistributedMesh::set_next_unique_id(), libMesh::DofMap::set_nonlocal_dof_objects(), libMesh::PetscDMWrapper::set_point_range_in_section(), WriteVecAndScalar::setupTests(), libMesh::RBEIMEvaluation::side_gather_bfs(), DistributedMeshTest::testRemoteElemError(), CheckpointIOTest::testSplitter(), libMesh::MeshRefinement::uniformly_coarsen(), libMesh::DistributedMesh::update_parallel_id_counts(), libMesh::GMVIO::write_binary(), libMesh::GMVIO::write_discontinuous_gmv(), libMesh::ExodusII_IO_Helper::write_nodal_coordinates(), libMesh::VTKIO::write_nodal_data(), libMesh::ExodusII_IO::write_nodal_data(), libMesh::System::write_parallel_data(), libMesh::System::write_SCALAR_dofs(), libMesh::XdrIO::write_serialized_bcs_helper(), libMesh::System::write_serialized_blocked_dof_objects(), libMesh::XdrIO::write_serialized_connectivity(), libMesh::XdrIO::write_serialized_nodes(), and libMesh::XdrIO::write_serialized_nodesets().
|
inlineoverridevirtual |
Implements libMesh::NumericVector< T >.
Definition at line 776 of file trilinos_epetra_vector.h.
References libMesh::initialized(), and libMesh::libmesh_assert().
|
overridevirtual |
Computes the component-wise multiplication of this vector's entries by another's, \( u_i \leftarrow u_i v_i \, \forall i\).
Implements libMesh::NumericVector< T >.
Definition at line 131 of file trilinos_epetra_vector.C.
References libMesh::closed(), libMesh::libmesh_assert(), and libMesh::NumericVector< T >::size().
|
inlineinherited |
Scales the vector by a
, \( \vec{u} \leftarrow a\vec{u} \).
Equivalent to u.scale(a)
Definition at line 420 of file numeric_vector.h.
|
overridevirtual |
Adds v
to *this, \( \vec{u} \leftarrow \vec{u} + \vec{v} \).
Equivalent to u.add(1, v)
.
Implements libMesh::NumericVector< T >.
Definition at line 106 of file trilinos_epetra_vector.C.
References libMesh::closed(), and libMesh::libmesh_assert().
|
overridevirtual |
Subtracts v
from *this, \( \vec{u} \leftarrow \vec{u} - \vec{v} \).
Equivalent to u.add
(-1, v).
Implements libMesh::NumericVector< T >.
Definition at line 119 of file trilinos_epetra_vector.C.
References libMesh::closed(), and libMesh::libmesh_assert().
|
overridevirtual |
Computes the component-wise division of this vector's entries by another's, \( u_i \leftarrow \frac{u_i}{v_i} \, \forall i\).
Implements libMesh::NumericVector< T >.
Definition at line 146 of file trilinos_epetra_vector.C.
References libMesh::closed(), libMesh::libmesh_assert(), and libMesh::NumericVector< T >::size().
|
inlineinherited |
Scales the vector by 1/a
, \( \vec{u} \leftarrow \frac{1}{a}\vec{u} \).
Equivalent to u.scale
(1./a)
Definition at line 438 of file numeric_vector.h.
|
delete |
|
delete |
|
overridevirtual |
Sets all entries of the vector to the value s
.
Implements libMesh::NumericVector< T >.
Definition at line 357 of file trilinos_epetra_vector.C.
|
overridevirtual |
This looks like a copy assignment operator, but note that, unlike normal copy assignment operators, it is pure virtual.
This function should be overridden in derived classes so that they can be copied correctly via references to the base class. This design usually isn't a good idea in general, but in this context it works because we usually don't have a mix of different kinds of NumericVectors active in the library at a single time.
Implements libMesh::NumericVector< T >.
Definition at line 368 of file trilinos_epetra_vector.C.
|
overridevirtual |
Sets (*this)(i) = v(i) for each entry of the vector.
Case 1: The vector is the same size of The global vector. Only add the local components.
Case 2: The vector is the same size as our local piece. Insert directly to the local piece.
Implements libMesh::NumericVector< T >.
Definition at line 383 of file trilinos_epetra_vector.C.
|
pure virtualinherited |
Computes \( u_i \leftarrow \frac{v_{1,i}}{v_{2,i}} \) (summation not implied) i.e.
the pointwise (component-wise) division of vec1
and vec2
, and stores the result in *this
.
Implemented in libMesh::PetscVector< T >, libMesh::EigenSparseVector< T >, libMesh::DistributedVector< T >, and libMesh::LaspackVector< T >.
|
overridevirtual |
Computes \( u_i \leftarrow u_i v_i \) (summation not implied) i.e.
the pointwise (component-wise) product of vec1
and vec2
, and stores the result in *this
.
Implements libMesh::NumericVector< T >.
Definition at line 345 of file trilinos_epetra_vector.C.
References libMesh::EpetraVector< T >::_vec.
|
inlinevirtualinherited |
Prints the local contents of the vector, by default to libMesh::out.
Definition at line 1040 of file numeric_vector.h.
|
inlineinherited |
Definition at line 1022 of file numeric_vector.h.
|
inlinevirtualinherited |
Prints the global contents of the vector, by default to libMesh::out.
Definition at line 1077 of file numeric_vector.h.
|
inlineinherited |
Definition at line 1055 of file numeric_vector.h.
|
staticinherited |
Prints the reference information, by default to libMesh::out
.
Definition at line 81 of file reference_counter.C.
References libMesh::ReferenceCounter::_enable_print_counter, and libMesh::ReferenceCounter::get_info().
Referenced by libMesh::LibMeshInit::~LibMeshInit().
|
virtualinherited |
Print the contents of the vector in Matlab's sparse matrix format.
Optionally prints the vector to the file named name
. If name
is not specified it is dumped to the screen.
Reimplemented in libMesh::PetscVector< T >, and libMesh::PetscVector< libMesh::Number >.
Definition at line 245 of file numeric_vector.C.
Referenced by libMesh::RBConstruction::enrich_basis_from_rhs_terms().
|
inlineinherited |
Definition at line 114 of file parallel_object.h.
References libMesh::ParallelObject::_communicator, and TIMPI::Communicator::rank().
Referenced by libMesh::BoundaryInfo::_find_id_maps(), libMesh::PetscDMWrapper::add_dofs_to_section(), libMesh::DistributedMesh::add_elem(), libMesh::BoundaryInfo::add_elements(), libMesh::DofMap::add_neighbors_to_send_list(), libMesh::DistributedMesh::add_node(), libMesh::MeshTools::Modification::all_tri(), libMesh::DofMap::allgather_recursive_constraints(), libMesh::FEMSystem::assembly(), libMesh::Nemesis_IO::assert_symmetric_cmaps(), libMesh::Partitioner::assign_partitioning(), libMesh::Nemesis_IO_Helper::build_element_and_node_maps(), libMesh::Partitioner::build_graph(), libMesh::InfElemBuilder::build_inf_elem(), libMesh::BoundaryInfo::build_node_list_from_side_list(), libMesh::EquationSystems::build_parallel_elemental_solution_vector(), libMesh::EquationSystems::build_parallel_solution_vector(), libMesh::MeshFunction::check_found_elem(), libMesh::DistributedMesh::clear(), libMesh::DistributedMesh::clear_elems(), libMesh::ExodusII_IO_Helper::close(), libMesh::Nemesis_IO_Helper::compute_border_node_ids(), libMesh::Nemesis_IO_Helper::compute_communication_map_parameters(), libMesh::Nemesis_IO_Helper::compute_internal_and_border_elems_and_internal_nodes(), libMesh::RBConstruction::compute_max_error_bound(), libMesh::Nemesis_IO_Helper::compute_node_communication_maps(), libMesh::Nemesis_IO_Helper::compute_num_global_elem_blocks(), libMesh::Nemesis_IO_Helper::compute_num_global_nodesets(), libMesh::Nemesis_IO_Helper::compute_num_global_sidesets(), libMesh::Nemesis_IO_Helper::construct_nemesis_filename(), libMesh::ExodusII_IO::copy_elemental_solution(), libMesh::ExodusII_IO::copy_nodal_solution(), libMesh::ExodusII_IO::copy_scalar_solution(), libMesh::Nemesis_IO::copy_scalar_solution(), libMesh::MeshTools::correct_node_proc_ids(), libMesh::ExodusII_IO_Helper::create(), libMesh::DistributedMesh::delete_elem(), libMesh::MeshCommunication::delete_remote_elements(), libMesh::DofMap::distribute_dofs(), libMesh::DofMap::distribute_scalar_dofs(), libMesh::DistributedMesh::DistributedMesh(), libMesh::DofMapBase::end_dof(), libMesh::DofMapBase::end_old_dof(), libMesh::EnsightIO::EnsightIO(), libMesh::GenericProjector< FFunctor, GFunctor, FValue, ProjectionAction >::SubFunctor::find_dofs_to_send(), libMesh::UnstructuredMesh::find_neighbors(), libMesh::DofMapBase::first_dof(), libMesh::DofMapBase::first_old_dof(), libMesh::RBEIMEvaluation::gather_bfs(), libMesh::Nemesis_IO_Helper::get_cmap_params(), libMesh::Nemesis_IO_Helper::get_eb_info_global(), libMesh::Nemesis_IO_Helper::get_elem_cmap(), libMesh::Nemesis_IO_Helper::get_elem_map(), libMesh::MeshBase::get_info(), libMesh::DofMap::get_info(), libMesh::Nemesis_IO_Helper::get_init_global(), libMesh::Nemesis_IO_Helper::get_init_info(), libMesh::RBEIMEvaluation::get_interior_basis_functions_as_vecs(), libMesh::Nemesis_IO_Helper::get_loadbal_param(), libMesh::DofMap::get_local_constraints(), libMesh::MeshBase::get_local_constraints(), libMesh::Nemesis_IO_Helper::get_node_cmap(), libMesh::Nemesis_IO_Helper::get_node_map(), libMesh::Nemesis_IO_Helper::get_ns_param_global(), libMesh::Nemesis_IO_Helper::get_ss_param_global(), libMesh::SparsityPattern::Build::handle_vi_vj(), libMesh::LaplaceMeshSmoother::init(), libMesh::SystemSubsetBySubdomain::init(), HeatSystem::init_data(), libMesh::ExodusII_IO_Helper::initialize(), libMesh::ExodusII_IO_Helper::initialize_element_variables(), libMesh::ExodusII_IO_Helper::initialize_global_variables(), libMesh::ExodusII_IO_Helper::initialize_nodal_variables(), libMesh::DistributedMesh::insert_elem(), libMesh::DofMap::is_evaluable(), libMesh::SparsityPattern::Build::join(), libMesh::TransientRBEvaluation::legacy_write_offline_data_to_files(), libMesh::RBSCMEvaluation::legacy_write_offline_data_to_files(), libMesh::RBEvaluation::legacy_write_offline_data_to_files(), libMesh::MeshTools::libmesh_assert_consistent_distributed(), libMesh::MeshTools::libmesh_assert_consistent_distributed_nodes(), libMesh::MeshTools::libmesh_assert_contiguous_dof_ids(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Elem >(), libMesh::MeshTools::libmesh_assert_valid_neighbors(), libMesh::DistributedMesh::libmesh_assert_valid_parallel_object_ids(), libMesh::DofMap::local_variable_indices(), main(), libMesh::MeshRefinement::make_coarsening_compatible(), AugmentSparsityOnInterface::mesh_reinit(), libMesh::TriangulatorInterface::MeshedHole::MeshedHole(), libMesh::MeshBase::n_active_local_elem(), libMesh::BoundaryInfo::n_boundary_conds(), libMesh::MeshTools::n_connected_components(), libMesh::MeshBase::n_constraint_rows(), libMesh::BoundaryInfo::n_edge_conds(), libMesh::DofMapBase::n_local_dofs(), libMesh::MeshBase::n_local_elem(), libMesh::MeshBase::n_local_nodes(), libMesh::BoundaryInfo::n_nodeset_conds(), libMesh::BoundaryInfo::n_shellface_conds(), libMesh::RBEIMEvaluation::node_gather_bfs(), libMesh::DistributedMesh::own_node(), libMesh::BoundaryInfo::parallel_sync_node_ids(), libMesh::BoundaryInfo::parallel_sync_side_ids(), libMesh::System::point_gradient(), libMesh::System::point_hessian(), libMesh::System::point_value(), libMesh::MeshBase::print_constraint_rows(), libMesh::DofMap::print_dof_constraints(), libMesh::DofMap::process_mesh_constraint_rows(), libMesh::Nemesis_IO_Helper::put_cmap_params(), libMesh::Nemesis_IO_Helper::put_elem_cmap(), libMesh::Nemesis_IO_Helper::put_elem_map(), libMesh::Nemesis_IO_Helper::put_loadbal_param(), libMesh::Nemesis_IO_Helper::put_node_cmap(), libMesh::Nemesis_IO_Helper::put_node_map(), libMesh::NameBasedIO::read(), libMesh::Nemesis_IO::read(), libMesh::XdrIO::read(), libMesh::CheckpointIO::read(), libMesh::EquationSystems::read(), libMesh::ExodusII_IO_Helper::read_elem_num_map(), libMesh::ExodusII_IO_Helper::read_global_values(), libMesh::ExodusII_IO::read_header(), libMesh::CheckpointIO::read_header(), libMesh::XdrIO::read_header(), libMesh::System::read_header(), libMesh::System::read_legacy_data(), libMesh::DynaIO::read_mesh(), libMesh::ExodusII_IO_Helper::read_node_num_map(), libMesh::System::read_parallel_data(), libMesh::TransientRBConstruction::read_riesz_representors_from_files(), libMesh::RBConstruction::read_riesz_representors_from_files(), libMesh::System::read_SCALAR_dofs(), libMesh::XdrIO::read_serialized_bc_names(), libMesh::XdrIO::read_serialized_bcs_helper(), libMesh::System::read_serialized_blocked_dof_objects(), libMesh::XdrIO::read_serialized_connectivity(), libMesh::System::read_serialized_data(), libMesh::XdrIO::read_serialized_nodes(), libMesh::XdrIO::read_serialized_nodesets(), libMesh::XdrIO::read_serialized_subdomain_names(), libMesh::System::read_serialized_vector(), libMesh::System::read_serialized_vectors(), libMesh::Nemesis_IO_Helper::read_var_names_impl(), libMesh::SimplexRefiner::refine_via_edges(), libMesh::StaticCondensationDofMap::reinit(), libMesh::DistributedMesh::renumber_dof_objects(), libMesh::DistributedMesh::renumber_nodes_and_elements(), libMesh::DofMap::scatter_constraints(), libMesh::CheckpointIO::select_split_config(), libMesh::DistributedMesh::set_next_unique_id(), libMesh::DofMap::set_nonlocal_dof_objects(), libMesh::PetscDMWrapper::set_point_range_in_section(), libMesh::RBEIMEvaluation::side_gather_bfs(), ExodusTest< elem_type >::test_read_gold(), ExodusTest< elem_type >::test_write(), MeshInputTest::testAbaqusRead(), MeshInputTest::testBadGmsh(), MeshInputTest::testCopyElementSolutionImpl(), MeshInputTest::testCopyElementVectorImpl(), MeshInputTest::testCopyNodalSolutionImpl(), DefaultCouplingTest::testCoupling(), PointNeighborCouplingTest::testCoupling(), MeshInputTest::testDynaFileMappings(), MeshInputTest::testDynaNoSplines(), MeshInputTest::testDynaReadElem(), MeshInputTest::testDynaReadPatch(), MeshInputTest::testExodusFileMappings(), MeshInputTest::testExodusIGASidesets(), MeshInputTest::testExodusWriteElementDataFromDiscontinuousNodalData(), MeshInputTest::testGmshBCIDOverlap(), MeshInputTest::testGoodGmsh(), MeshInputTest::testGoodSTL(), MeshInputTest::testGoodSTLBinary(), MeshInputTest::testLowOrderEdgeBlocks(), SystemsTest::testProjectMatrix3D(), BoundaryInfoTest::testShellFaceConstraints(), MeshInputTest::testSingleElementImpl(), WriteVecAndScalar::testSolution(), CheckpointIOTest::testSplitter(), MeshInputTest::testTetgenIO(), libMesh::MeshTools::total_weight(), libMesh::NetGenMeshInterface::triangulate(), libMesh::MeshRefinement::uniformly_coarsen(), libMesh::DistributedMesh::update_parallel_id_counts(), libMesh::DTKAdapter::update_variable_values(), libMesh::MeshTools::volume(), libMesh::STLIO::write(), libMesh::NameBasedIO::write(), libMesh::XdrIO::write(), libMesh::CheckpointIO::write(), libMesh::EquationSystems::write(), libMesh::GMVIO::write_discontinuous_gmv(), libMesh::ExodusII_IO::write_element_data(), libMesh::ExodusII_IO_Helper::write_element_values(), libMesh::ExodusII_IO_Helper::write_element_values_element_major(), libMesh::ExodusII_IO_Helper::write_elements(), libMesh::ExodusII_IO_Helper::write_elemset_data(), libMesh::ExodusII_IO_Helper::write_elemsets(), libMesh::ExodusII_IO::write_global_data(), libMesh::ExodusII_IO_Helper::write_global_values(), libMesh::System::write_header(), libMesh::ExodusII_IO::write_information_records(), libMesh::ExodusII_IO_Helper::write_information_records(), libMesh::ExodusII_IO_Helper::write_nodal_coordinates(), libMesh::UCDIO::write_nodal_data(), libMesh::VTKIO::write_nodal_data(), libMesh::ExodusII_IO::write_nodal_data(), libMesh::ExodusII_IO::write_nodal_data_common(), libMesh::ExodusII_IO::write_nodal_data_discontinuous(), libMesh::ExodusII_IO_Helper::write_nodal_values(), libMesh::ExodusII_IO_Helper::write_nodeset_data(), libMesh::Nemesis_IO_Helper::write_nodesets(), libMesh::ExodusII_IO_Helper::write_nodesets(), libMesh::RBEIMEvaluation::write_out_interior_basis_functions(), libMesh::RBEIMEvaluation::write_out_node_basis_functions(), libMesh::RBEIMEvaluation::write_out_side_basis_functions(), write_output_solvedata(), libMesh::System::write_parallel_data(), libMesh::RBConstruction::write_riesz_representors_to_files(), libMesh::System::write_SCALAR_dofs(), libMesh::XdrIO::write_serialized_bc_names(), libMesh::XdrIO::write_serialized_bcs_helper(), libMesh::System::write_serialized_blocked_dof_objects(), libMesh::XdrIO::write_serialized_connectivity(), libMesh::System::write_serialized_data(), libMesh::XdrIO::write_serialized_nodes(), libMesh::XdrIO::write_serialized_nodesets(), libMesh::XdrIO::write_serialized_subdomain_names(), libMesh::System::write_serialized_vector(), libMesh::System::write_serialized_vectors(), libMesh::ExodusII_IO_Helper::write_sideset_data(), libMesh::Nemesis_IO_Helper::write_sidesets(), libMesh::ExodusII_IO_Helper::write_sidesets(), libMesh::ExodusII_IO::write_timestep(), libMesh::ExodusII_IO_Helper::write_timestep(), and libMesh::ExodusII_IO::write_timestep_discontinuous().
|
virtualinherited |
Read the contents of the vector from the Matlab-script format used by PETSc.
If the size of the matrix in filename
appears consistent with the existing partitioning of this
then the existing parallel decomposition will be retained. If not, then this
will be initialized with the size from the file, linearly partitioned onto the number of processors available.
Definition at line 297 of file numeric_vector.C.
|
inherited |
Definition at line 685 of file numeric_vector.C.
Referenced by libMesh::NumericVector< Number >::add_vector(), libMesh::NumericVector< Number >::compatible(), and libMesh::NumericVector< Number >::insert().
|
overridevirtual |
Computes the component-wise reciprocal, \( u_i \leftarrow \frac{1}{u_i} \, \forall i\).
Implements libMesh::NumericVector< T >.
Definition at line 178 of file trilinos_epetra_vector.C.
|
private |
Copy values into the vector overwriting any values that already exist for the specified indices.
Definition at line 619 of file trilinos_epetra_vector.C.
|
private |
Copy values into the vector, replacing any values that already exist for the specified GIDs.
GIDs | List of global ids. Must be the same length as the accompanying list of values. |
values | List of coefficient values. Must be the same length as the accompanying list of GIDs. |
Definition at line 628 of file trilinos_epetra_vector.C.
|
private |
Definition at line 640 of file trilinos_epetra_vector.C.
|
inlinevirtualinherited |
Restores a view into this vector using the indices in rows
.
This is currently only implemented for PetscVectors.
Reimplemented in libMesh::PetscVector< T >.
Definition at line 786 of file numeric_vector.h.
Referenced by libMesh::StaticCondensation::apply(), libMesh::CondensedEigenSystem::copy_sub_to_super(), and libMesh::CondensedEigenSystem::copy_super_to_sub().
|
overridevirtual |
Scale each element of the vector by the given factor
.
Implements libMesh::NumericVector< T >.
Definition at line 319 of file trilinos_epetra_vector.C.
|
overridevirtual |
Sets v(i) = value
.
Note that library implementations of this method are thread safe, e.g. we will lock _numeric_vector_mutex
before writing to the vector
Implements libMesh::NumericVector< T >.
Definition at line 162 of file trilinos_epetra_vector.C.
References value.
Referenced by libMesh::EpetraVector< T >::localize().
|
inherited |
Allow the user to change the ParallelType of the NumericVector under some circumstances.
If the NumericVector has not been initialized yet, then it is generally safe to change the ParallelType. otherwise, if the NumericVector has already been initialized with a specific type, we cannot change it without doing some extra copying/reinitialization work, and we currently throw an error if this is requested.
Definition at line 97 of file numeric_vector.C.
Referenced by libMesh::System::add_vector().
|
inlineprivate |
Set whether or not non-local data values should be ignored.
Definition at line 358 of file trilinos_epetra_vector.h.
References libMesh::EpetraVector< T >::ignoreNonLocalEntries_.
|
inlineoverridevirtual |
Implements libMesh::NumericVector< T >.
Definition at line 735 of file trilinos_epetra_vector.h.
References libMesh::initialized(), and libMesh::libmesh_assert().
Referenced by libMesh::EpetraVector< T >::add().
|
virtualinherited |
Definition at line 559 of file numeric_vector.C.
Referenced by libMesh::System::discrete_var_norm().
|
virtualinherited |
Definition at line 576 of file numeric_vector.C.
Referenced by libMesh::System::discrete_var_norm().
|
virtualinherited |
Definition at line 593 of file numeric_vector.C.
Referenced by libMesh::System::discrete_var_norm().
|
overridevirtual |
Implements libMesh::NumericVector< T >.
Definition at line 50 of file trilinos_epetra_vector.C.
References libMesh::closed(), and libMesh::libmesh_assert().
|
private |
Accumulate values into the vector, adding them to any values that already exist for the specified indices.
Definition at line 588 of file trilinos_epetra_vector.C.
|
private |
Accumulate values into the vector, adding them to any values that already exist for the specified GIDs.
GIDs | List of global ids. Must be the same length as the accompanying list of values. |
values | List of coefficient values. Must be the same length as the accompanying list of GIDs. |
Definition at line 597 of file trilinos_epetra_vector.C.
|
private |
Definition at line 609 of file trilinos_epetra_vector.C.
|
inlineoverridevirtual |
Swaps the contents of this with v
.
There should be enough indirection in subclasses to make this an O(1) header-swap operation.
Reimplemented from libMesh::NumericVector< T >.
Definition at line 819 of file trilinos_epetra_vector.h.
References libMesh::EpetraVector< T >::_destroy_vec_on_exit, libMesh::EpetraVector< T >::_map, libMesh::EpetraVector< T >::_vec, libMesh::EpetraVector< T >::allocatedNonlocalLength_, libMesh::EpetraVector< T >::ignoreNonLocalEntries_, libMesh::EpetraVector< T >::last_edit, libMesh::EpetraVector< T >::myCoefs_, libMesh::EpetraVector< T >::myFirstID_, libMesh::EpetraVector< T >::myNumIDs_, libMesh::EpetraVector< T >::nonlocalCoefs_, libMesh::EpetraVector< T >::nonlocalElementSize_, libMesh::EpetraVector< T >::nonlocalIDs_, libMesh::EpetraVector< T >::numNonlocalIDs_, and libMesh::NumericVector< T >::swap().
Referenced by libMesh::Problem_Interface::computeF(), libMesh::Problem_Interface::computeJacobian(), and libMesh::Problem_Interface::computePreconditioner().
|
inlineinherited |
Definition at line 154 of file numeric_vector.h.
Referenced by libMesh::System::add_vector(), libMesh::MeshFunction::check_found_elem(), libMesh::DofMap::constrain_element_residual(), libMesh::PetscVector< libMesh::Number >::create_subvector(), libMesh::EpetraVector< T >::EpetraVector(), libMesh::DofMap::heterogeneously_constrain_element_jacobian_and_residual(), libMesh::DofMap::heterogeneously_constrain_element_residual(), libMesh::DistributedVector< T >::init(), libMesh::LaspackVector< T >::init(), libMesh::EigenSparseVector< T >::init(), libMesh::EpetraVector< T >::init(), libMesh::PetscVector< libMesh::Number >::localize(), libMesh::System::project_vector(), and libMesh::System::read_serialized_vector().
|
inlineinherited |
Definition at line 164 of file numeric_vector.h.
|
inline |
Definition at line 268 of file trilinos_epetra_vector.h.
References libMesh::EpetraVector< T >::_vec, and libMesh::libmesh_assert().
Referenced by libMesh::EpetraMatrix< T >::get_diagonal(), and libMesh::NoxNonlinearSolver< Number >::solve().
|
inlineoverridevirtual |
Set all entries to zero.
Equivalent to v
= 0, but more obvious and faster.
Implements libMesh::NumericVector< T >.
Definition at line 698 of file trilinos_epetra_vector.h.
References libMesh::closed(), libMesh::initialized(), and libMesh::libmesh_assert().
|
inlineoverridevirtual |
Implements libMesh::NumericVector< T >.
Definition at line 710 of file trilinos_epetra_vector.h.
References libMesh::AUTOMATIC.
Referenced by libMesh::EpetraVector< T >::add_vector().
|
protectedinherited |
Definition at line 120 of file parallel_object.h.
Referenced by libMesh::EquationSystems::build_parallel_elemental_solution_vector(), libMesh::EquationSystems::build_parallel_solution_vector(), libMesh::StaticCondensation::close(), libMesh::ParallelObject::comm(), libMesh::CondensedEigenSystem::initialize_condensed_matrices(), libMesh::ParallelObject::n_processors(), libMesh::ParallelObject::operator=(), libMesh::ParallelObject::processor_id(), libMesh::BoundaryInfo::regenerate_id_sets(), and libMesh::StaticCondensationDofMap::reinit().
|
staticprotectedinherited |
Actually holds the data.
Definition at line 124 of file reference_counter.h.
Referenced by libMesh::ReferenceCounter::get_info().
|
private |
This boolean value should only be set to false for the constructor which takes a Epetra Vec object.
Definition at line 286 of file trilinos_epetra_vector.h.
Referenced by libMesh::EpetraVector< T >::swap().
|
staticprotectedinherited |
Flag to control whether reference count information is printed when print_info is called.
Definition at line 143 of file reference_counter.h.
Referenced by libMesh::ReferenceCounter::disable_print_counter_info(), libMesh::ReferenceCounter::enable_print_counter_info(), and libMesh::ReferenceCounter::print_info().
|
protectedinherited |
Flag which tracks whether the vector's values are consistent on all processors after insertion or addition of values has occurred on some or all processors.
Definition at line 831 of file numeric_vector.h.
Referenced by libMesh::NumericVector< Number >::closed(), libMesh::PetscVector< libMesh::Number >::create_subvector(), libMesh::EpetraVector< T >::EpetraVector(), libMesh::DistributedVector< T >::localize(), libMesh::DistributedVector< T >::operator=(), and libMesh::DistributedVector< T >::swap().
|
protectedinherited |
true
once init() has been called.
Definition at line 836 of file numeric_vector.h.
Referenced by libMesh::PetscVector< libMesh::Number >::create_subvector(), libMesh::EpetraVector< T >::EpetraVector(), libMesh::NumericVector< Number >::initialized(), libMesh::DistributedVector< T >::localize(), libMesh::DistributedVector< T >::operator=(), and libMesh::DistributedVector< T >::swap().
|
private |
Holds the distributed Map.
Definition at line 280 of file trilinos_epetra_vector.h.
Referenced by libMesh::EpetraVector< T >::EpetraVector(), and libMesh::EpetraVector< T >::swap().
|
staticprotectedinherited |
Mutual exclusion object to enable thread-safe reference counting.
Definition at line 137 of file reference_counter.h.
|
staticprotectedinherited |
The number of objects.
Print the reference count information when the number returns to 0.
Definition at line 132 of file reference_counter.h.
Referenced by libMesh::ReferenceCounter::n_objects(), libMesh::ReferenceCounter::ReferenceCounter(), and libMesh::ReferenceCounter::~ReferenceCounter().
|
protectedinherited |
Mutex for performing thread-safe operations.
Definition at line 846 of file numeric_vector.h.
|
protectedinherited |
Type of vector.
Definition at line 841 of file numeric_vector.h.
Referenced by libMesh::PetscVector< libMesh::Number >::create_subvector(), libMesh::DistributedVector< T >::DistributedVector(), libMesh::EigenSparseVector< T >::EigenSparseVector(), libMesh::EpetraVector< T >::EpetraVector(), libMesh::PetscVector< libMesh::Number >::init(), libMesh::LaspackVector< T >::LaspackVector(), and libMesh::NumericVector< Number >::type().
|
private |
Actual Epetra vector datatype to hold vector entries.
Definition at line 275 of file trilinos_epetra_vector.h.
Referenced by libMesh::EpetraVector< T >::add(), libMesh::EpetraVector< T >::add_vector(), libMesh::EpetraVector< T >::dot(), libMesh::EpetraVector< T >::EpetraVector(), libMesh::EpetraVector< T >::FEoperatorequals(), libMesh::EpetraVector< T >::localize(), libMesh::EpetraVector< T >::pointwise_mult(), libMesh::EpetraVector< T >::swap(), and libMesh::EpetraVector< T >::vec().
|
private |
Definition at line 394 of file trilinos_epetra_vector.h.
Referenced by libMesh::EpetraVector< T >::FEoperatorequals(), and libMesh::EpetraVector< T >::swap().
|
private |
Definition at line 404 of file trilinos_epetra_vector.h.
Referenced by libMesh::EpetraVector< T >::setIgnoreNonLocalEntries(), and libMesh::EpetraVector< T >::swap().
|
private |
Keep track of whether the last write operation on this vector was nothing (0) or a sum (1) or an add (2), so we can decide how to do the GlobalAssemble()
Definition at line 402 of file trilinos_epetra_vector.h.
Referenced by libMesh::EpetraVector< T >::swap().
|
private |
Definition at line 389 of file trilinos_epetra_vector.h.
Referenced by libMesh::EpetraVector< T >::EpetraVector(), and libMesh::EpetraVector< T >::swap().
|
private |
Definition at line 387 of file trilinos_epetra_vector.h.
Referenced by libMesh::EpetraVector< T >::EpetraVector(), and libMesh::EpetraVector< T >::swap().
|
private |
Definition at line 388 of file trilinos_epetra_vector.h.
Referenced by libMesh::EpetraVector< T >::EpetraVector(), and libMesh::EpetraVector< T >::swap().
|
private |
Definition at line 395 of file trilinos_epetra_vector.h.
Referenced by libMesh::EpetraVector< T >::FEoperatorequals(), and libMesh::EpetraVector< T >::swap().
|
private |
Definition at line 392 of file trilinos_epetra_vector.h.
Referenced by libMesh::EpetraVector< T >::FEoperatorequals(), and libMesh::EpetraVector< T >::swap().
|
private |
Definition at line 391 of file trilinos_epetra_vector.h.
Referenced by libMesh::EpetraVector< T >::FEoperatorequals(), and libMesh::EpetraVector< T >::swap().
|
private |
Definition at line 393 of file trilinos_epetra_vector.h.
Referenced by libMesh::EpetraVector< T >::FEoperatorequals(), and libMesh::EpetraVector< T >::swap().