libMesh
Loading...
Searching...
No Matches
vector_fe_ex6.C
Go to the documentation of this file.
1// The libMesh Finite Element Library.
2// Copyright (C) 2002-2026 Benjamin S. Kirk, John W. Peterson, Roy H. Stogner
3
4// This library is free software; you can redistribute it and/or
5// modify it under the terms of the GNU Lesser General Public
6// License as published by the Free Software Foundation; either
7// version 2.1 of the License, or (at your option) any later version.
8
9// This library is distributed in the hope that it will be useful,
10// but WITHOUT ANY WARRANTY; without even the implied warranty of
11// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
12// Lesser General Public License for more details.
13
14// You should have received a copy of the GNU Lesser General Public
15// License along with this library; if not, write to the Free Software
16// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
17
18
19// <h1>Vector Finite Elements Example 6 - Raviart-Thomas elements (div-grad)</h1>
20// \author Nuno Nobre
21// \date 2023
22//
23// This example uses Raviart-Thomas elements to solve a model div-grad problem
24// in H(div) in both 2d and 3d. The problem is simply a mixed div-grad
25// formulation, \vec{u} = -\nabla p, and -\nabla \cdot \vec{u} = -f, of the
26// Poisson problem in Introduction Example 3, \nabla^2 p = -f. In particular,
27// unlike in Introduction Example 3, where we solve solely for the scalar field
28// p, here we solve for both the vector field \vec{u} and the scalar field p.
29
30// Basic utilities.
31#include "libmesh/string_to_enum.h"
32
33// The solver packages supported by libMesh.
34#include "libmesh/enum_solver_package.h"
35
36// The mesh object and mesh generation and modification utilities.
37#include "libmesh/mesh.h"
38#include "libmesh/mesh_generation.h"
39#include "libmesh/mesh_modification.h"
40
41// Matrix and vector types.
42#include "libmesh/dense_matrix.h"
43#include "libmesh/sparse_matrix.h"
44#include "libmesh/dense_vector.h"
45#include "libmesh/numeric_vector.h"
46
47// The finite element object and the geometric element type.
48#include "libmesh/fe.h"
49#include "libmesh/elem.h"
50
51// Gauss quadrature rules.
52#include "libmesh/quadrature_gauss.h"
53
54// The dof map, which handles degree of freedom indexing.
55#include "libmesh/dof_map.h"
56
57// The system of equations.
58#include "libmesh/equation_systems.h"
59#include "libmesh/linear_implicit_system.h"
60
61// The exact solution and error computation.
62#include "libmesh/exact_solution.h"
63#include "libmesh/enum_norm_type.h"
64#include "solution_function.h"
65
66// I/O utilities.
67#include "libmesh/getpot.h"
68#include "libmesh/exodusII_io.h"
69
70
71// Bring in everything from the libMesh namespace.
72using namespace libMesh;
73
74// Function prototype. This is the function that will assemble
75// the linear system for our div-grad problem. Note that the
76// function will take the EquationSystems object and the
77// name of the system we are assembling as input. From the
78// EquationSystems object we have access to the Mesh and
79// other objects we might need.
81 const std::string & system_name);
82
83int main (int argc, char ** argv)
84{
85 // Initialize libMesh.
86 LibMeshInit init (argc, argv);
87
88 // This example requires a linear solver package.
89 libmesh_example_requires(libMesh::default_solver_package() != INVALID_SOLVER_PACKAGE,
90 "--enable-petsc, --enable-trilinos, or --enable-eigen");
91
92 // Parse the input file.
93 GetPot infile("vector_fe_ex6.in");
94
95 // But allow the command line to override it.
96 infile.parse_command_line(argc, argv);
97
98 // Read in parameters from the command line and the input file.
99 const unsigned int dimension = infile("dim", 2);
100 const unsigned int grid_size = infile("grid_size", 15);
101
102 // Skip higher-dimensional examples on a lower-dimensional libMesh build.
103 libmesh_example_requires(dimension <= LIBMESH_DIM, dimension << "D support");
104
105 // Create a mesh, with dimension to be overridden later, distributed
106 // across the default MPI communicator.
107 Mesh mesh(init.comm());
108
109 // Use the MeshTools::Generation mesh generator to create a uniform
110 // grid on the cube [-1,1]^D. To accomodate Raviart-Thomas elements, we must
111 // use TRI6/7 or QUAD8/9 elements in 2d, or TET14 or HEX27 in 3d.
112 const std::string elem_str = infile("element_type", std::string("TRI6"));
113
114 libmesh_error_msg_if((dimension == 2 && elem_str != "TRI6" && elem_str != "TRI7" && elem_str != "QUAD8" && elem_str != "QUAD9") ||
115 (dimension == 3 && elem_str != "TET14" && elem_str != "HEX27"),
116 "You selected " << elem_str <<
117 " but this example must be run with TRI6, TRI7, QUAD8, or QUAD9 in 2d" <<
118 " or with TET14, or HEX27 in 3d.");
119
120 const std::string bc_str = infile("boundary_condition", std::string("neumann"));
121 libmesh_error_msg_if(
122 (bc_str != "neumann") && (bc_str != "dirichlet"),
123 "You selected '" << bc_str << "', however, the valid options are 'dirichlet' or 'neumann'");
124 const bool neumann = (bc_str == "neumann");
125
126 if (dimension == 2)
128 grid_size,
129 grid_size,
130 -1., 1.,
131 -1., 1.,
132 Utility::string_to_enum<ElemType>(elem_str));
133 else if (dimension == 3)
135 grid_size,
136 grid_size,
137 grid_size,
138 -1., 1.,
139 -1., 1.,
140 -1., 1.,
141 Utility::string_to_enum<ElemType>(elem_str));
142
143 // Make sure the code is robust against nodal reorderings.
145
146 // Print information about the mesh to the screen.
148
149 // Create an equation systems object.
150 EquationSystems equation_systems (mesh);
151 equation_systems.parameters.set<bool>("neumann") = neumann;
152
153 // Declare the system "DivGrad" and its variables.
154 LinearImplicitSystem & system = equation_systems.add_system<LinearImplicitSystem>("DivGrad");
155
156 // Set the FE approximation order for the vector and scalar field variables.
157 const Order vector_order = static_cast<Order>(infile("order", 1u));
158 const Order scalar_order = static_cast<Order>(vector_order - 1u);
159
160 libmesh_error_msg_if(vector_order < FIRST || vector_order > ((dimension == 3) ? FIRST : FIFTH),
161 "You selected: " << vector_order <<
162 " but this example must be run with either 1 <= order <= 5 in 2d"
163 " or with order 1 in 3d.");
164
165 // Adds the variables "u" and "p" to "DivGrad". "u" will be our vector field
166 // whereas "p" will be the scalar field.
167 system.add_variable("u", vector_order, RAVIART_THOMAS);
168 system.add_variable("p", scalar_order, scalar_order == CONSTANT ? MONOMIAL : L2_HIERARCHIC);
169
170 // Add a scalar Lagrange multiplier to remove the nullspace if imposing the Neumann condition.
171 if (neumann)
172 system.add_variable("l", FIRST, SCALAR);
173
174 // Give the system a pointer to the matrix assembly
175 // function. This will be called when needed by the library.
176 system.attach_assemble_function(assemble_divgrad);
177
178 // Initialize the data structures for the equation system.
179 equation_systems.init();
180
181 // Prints information about the system to the screen.
182 equation_systems.print_info();
183
184 // Solve the system "DivGrad". Note that calling this
185 // member will assemble the linear system and invoke
186 // the default numerical solver.
187 system.solve();
188
189 ExactSolution exact_sol(equation_systems);
190
191 if (dimension == 2)
192 {
193 SolutionFunction<2> soln_func;
194 SolutionGradient<2> soln_grad;
195
196 // Build FunctionBase* containers to attach to the ExactSolution object.
197 std::vector<FunctionBase<Number> *> sols(1, &soln_func);
198 std::vector<FunctionBase<Gradient> *> grads(1, &soln_grad);
199
200 exact_sol.attach_exact_values(sols);
201 exact_sol.attach_exact_derivs(grads);
202 }
203 else if (dimension == 3)
204 {
205 SolutionFunction<3> soln_func;
206 SolutionGradient<3> soln_grad;
207
208 // Build FunctionBase* containers to attach to the ExactSolution object.
209 std::vector<FunctionBase<Number> *> sols(1, &soln_func);
210 std::vector<FunctionBase<Gradient> *> grads(1, &soln_grad);
211
212 exact_sol.attach_exact_values(sols);
213 exact_sol.attach_exact_derivs(grads);
214 }
215
216 // Use higher quadrature order for more accurate error results.
217 int extra_error_quadrature = infile("extra_error_quadrature", 2);
218 exact_sol.extra_quadrature_order(extra_error_quadrature);
219
220 // Compute the error.
221 exact_sol.compute_error("DivGrad", "u");
222 exact_sol.compute_error("DivGrad", "p");
223
224 // Print out the error values.
225 libMesh::out << "~~ Vector field (u) ~~"
226 << std::endl;
227 libMesh::out << "L2 error is: "
228 << exact_sol.l2_error("DivGrad", "u")
229 << std::endl;
230 libMesh::out << "HDiv semi-norm error is: "
231 << exact_sol.error_norm("DivGrad", "u", HDIV_SEMINORM)
232 << std::endl;
233 libMesh::out << "HDiv error is: "
234 << exact_sol.hdiv_error("DivGrad", "u")
235 << std::endl;
236 libMesh::out << "~~ Scalar field (p) ~~"
237 << std::endl;
238 libMesh::out << "L2 error is: "
239 << exact_sol.l2_error("DivGrad", "p")
240 << std::endl;
241
242#ifdef LIBMESH_HAVE_EXODUS_API
243
244 // We write the file in the ExodusII format.
245 ExodusII_IO(mesh).write_equation_systems("out.e", equation_systems);
246
247#endif // #ifdef LIBMESH_HAVE_EXODUS_API
248
249 // All done.
250 return 0;
251}
252
253
254
255// We now define the matrix assembly function for the
256// div-grad system. We need to first compute element
257// matrices and right-hand sides, and then take into
258// account the boundary conditions, which will be handled
259// via a penalty method.
261 const std::string & libmesh_dbg_var(system_name))
262{
263
264 // It is a good idea to make sure we are assembling
265 // the proper system.
266 libmesh_assert_equal_to (system_name, "DivGrad");
267
268 // Retrieve our boundary condition type. If not Neumann, then it is Dirichlet.
269 const bool neumann = es.parameters.get<bool>("neumann");
270
271 // Get a constant reference to the mesh object.
272 const MeshBase & mesh = es.get_mesh();
273
274 // The dimension that we are running.
275 const unsigned int dim = mesh.mesh_dimension();
276
277 // Get a reference to the LinearImplicitSystem we are solving.
278 LinearImplicitSystem & system = es.get_system<LinearImplicitSystem>("DivGrad");
279
280 // A reference to the DofMap object for this system. The DofMap
281 // object handles the index translation from node and element numbers
282 // to degree of freedom numbers.
283 const DofMap & dof_map = system.get_dof_map();
284
285 // Get a constant reference to the Finite Element type
286 // for the two variables in the system.
287 FEType vector_fe_type = dof_map.variable_type(system.variable_number("u"));
288 FEType scalar_fe_type = dof_map.variable_type(system.variable_number("p"));
289
290 // Build two Finite Element objects, one of each specified type. Since the
291 // FEBase::build() member dynamically creates memory we will
292 // store the object as a std::unique_ptr<FEBase>. This can be thought
293 // of as a pointer that will clean up after itself. Introduction Example 4
294 // describes some advantages of std::unique_ptr's in the context of
295 // quadrature rules.
296 std::unique_ptr<FEVectorBase> vector_fe (FEVectorBase::build(dim, vector_fe_type));
297 std::unique_ptr<FEBase> scalar_fe (FEBase::build(dim, scalar_fe_type));
298
299 // A just-high-enough Gauss quadrature rule for numerical integration.
300 QGauss qrule (dim, vector_fe_type.default_quadrature_order());
301
302 // Tell the finite element objects to use our quadrature rule.
303 vector_fe->attach_quadrature_rule (&qrule);
304 scalar_fe->attach_quadrature_rule (&qrule);
305
306 // Declare a special finite element object for boundary integration.
307 std::unique_ptr<FEVectorBase> vector_fe_face (FEVectorBase::build(dim, vector_fe_type));
308
309 // Boundary integration requires one quadrature rule with dimensionality one
310 // less than the dimensionality of the element.
311 QGauss qface(dim-1, vector_fe_type.default_quadrature_order());
312
313 // Tell the finite element object to use our quadrature rule.
314 vector_fe_face->attach_quadrature_rule (&qface);
315
316 // Here we define some references to cell-specific data that
317 // will be used to assemble the linear system.
318 //
319 // The element Jacobian * quadrature weight at each integration point.
320 const std::vector<Real> & JxW = vector_fe->get_JxW();
321
322 // The physical XY locations of the quadrature points on the element.
323 // These might be useful for evaluating spatially varying material
324 // properties at the quadrature points.
325 const std::vector<Point> & q_point = vector_fe->get_xyz();
326
327 // The element shape functions evaluated at the quadrature points.
328 const std::vector<std::vector<RealGradient>> & vector_phi = vector_fe->get_phi();
329 const std::vector<std::vector<Real>> & scalar_phi = scalar_fe->get_phi();
330
331 // The divergence of the element vector shape functions evaluated at the
332 // quadrature points.
333 const std::vector<std::vector<Real>> & div_vector_phi = vector_fe->get_div_phi();
334
335 // Define data structures to contain the element matrix
336 // and right-hand-side vector contribution. Following
337 // basic finite element terminology we will denote these
338 // "Ke" and "Fe". These datatypes are templated on
339 // Number, which allows the same code to work for real
340 // or complex numbers.
343
344 // These vectors will hold the degree of freedom indices for
345 // the element. These define where in the global system
346 // the element degrees of freedom get mapped.
347 std::vector<dof_id_type> dof_indices;
348 std::vector<dof_id_type> vector_dof_indices;
349 std::vector<dof_id_type> scalar_dof_indices;
350 std::vector<dof_id_type> lambda_dof_indices;
351
352 // The global system matrix
353 SparseMatrix<Number> & matrix = system.get_system_matrix();
354
355 // Now we will loop over all the elements in the mesh.
356 // We will compute the element matrix and right-hand-side
357 // contribution.
358 //
359 // Element ranges are a nice way to iterate through all the
360 // elements, or all the elements that have some property. The
361 // range will iterate from the first to the last element on
362 // the local processor.
363 // It is smart to make this one const so that we don't accidentally
364 // mess it up! In case users later modify this program to include
365 // refinement, we will be safe and will only consider the active
366 // elements; hence we use a variant of the
367 // active_local_element_ptr_range.
368 for (const auto & elem : mesh.active_local_element_ptr_range())
369 {
370 // Get the degree of freedom indices for the
371 // current element. These define where in the global
372 // matrix and right-hand-side this element will
373 // contribute to.
374 dof_map.dof_indices (elem, dof_indices);
375 dof_map.dof_indices (elem, vector_dof_indices, system.variable_number("u"));
376 dof_map.dof_indices (elem, scalar_dof_indices, system.variable_number("p"));
377 if (neumann)
378 dof_map.dof_indices (elem, lambda_dof_indices, system.variable_number("l"));
379
380 // Cache the number of degrees of freedom, in total and for each
381 // variable, on this element, for use as array and loop bounds later.
382 // We use cast_int to explicitly convert from size() (which may be
383 // 64-bit) to unsigned int (which may be 32-bit but which is definitely
384 // enough to count *local* degrees of freedom.
385 const unsigned int n_dofs =
386 cast_int<unsigned int>(dof_indices.size());
387 const unsigned int vector_n_dofs =
388 cast_int<unsigned int>(vector_dof_indices.size());
389 const unsigned int scalar_n_dofs =
390 cast_int<unsigned int>(scalar_dof_indices.size());
391 const unsigned int lambda_n_dofs =
392 cast_int<unsigned int>(lambda_dof_indices.size());
393
394 // Compute the element-specific data for the current
395 // element. This involves computing the location of the
396 // quadrature points (q_point) and the shape functions
397 // and their divergences for the current element.
398 vector_fe->reinit (elem);
399 scalar_fe->reinit (elem);
400
401 // The total number of degrees of freedom is just the sum of the number
402 // of degrees of freedom per variable. We should also have the same
403 // number of degrees of freedom as shape functions for each variable.
404 libmesh_assert_equal_to (n_dofs, vector_n_dofs + scalar_n_dofs + lambda_n_dofs);
405 libmesh_assert_equal_to (vector_n_dofs, vector_phi.size());
406 libmesh_assert_equal_to (scalar_n_dofs, scalar_phi.size());
407
408 // Zero the element matrix and right-hand side before
409 // summing them. We use the resize member here because
410 // the number of degrees of freedom might have changed from
411 // the last element. Note that this will be the case if the
412 // element type is different (i.e. the last element was a
413 // triangle, now we are on a quadrilateral).
414
415 // The DenseMatrix::resize() and the DenseVector::resize()
416 // members will automatically zero out the matrix and vector.
417 Ke.resize (n_dofs, n_dofs);
418 Fe.resize (n_dofs);
419
420 // Now loop over the quadrature points. This handles
421 // the numeric integration.
422 for (unsigned int qp=0; qp<qrule.n_points(); qp++)
423 {
424
425 // Now we will build the element matrix.
426 // The upper-left block involves a double loop to integrate the
427 // vector test functions (i) against the vector trial functions (j).
428 for (unsigned int i = 0; i != vector_n_dofs; i++)
429 for (unsigned int j = 0; j != vector_n_dofs; j++)
430 {
431 Ke(i, j) += JxW[qp]*(vector_phi[i][qp]*vector_phi[j][qp]);
432 }
433
434 // The upper-right block involves a double loop to integrate the
435 // divergence of the vector test functions (i) against the scalar
436 // trial functions (l).
437 for (unsigned int i = 0; i != vector_n_dofs; i++)
438 for (unsigned int l = 0; l != scalar_n_dofs; l++)
439 {
440 Ke(i, l + vector_n_dofs) -= JxW[qp]*(div_vector_phi[i][qp]*scalar_phi[l][qp]);
441 }
442
443 // The lower-left block involves a double loop to integrate the
444 // scalar test functions (k) against the divergence of the vector
445 // trial functions (j).
446 for (unsigned int k = 0; k != scalar_n_dofs; k++)
447 for (unsigned int j = 0; j != vector_n_dofs; j++)
448 {
449 Ke(k + vector_n_dofs, j) -= JxW[qp]*(div_vector_phi[j][qp]*scalar_phi[k][qp]);
450 }
451
452 // This is the end of the matrix summation loop
453 // Now we build the element right-hand-side contribution.
454 // This involves a single loop in which we integrate the "forcing
455 // function" in the PDE against the scalar test functions (k).
456 {
457 // The location of the current quadrature point.
458 const Real x = q_point[qp](0);
459 const Real y = q_point[qp](1);
460 const Real z = q_point[qp](2);
461
462 // "f" is the forcing function for the Poisson equation, which is
463 // just the divergence of the exact solution for the vector field.
464 // This is the well-known "method of manufactured solutions".
465 Real f = 0;
466 if (dim == 2)
467 f = DivGradExactSolution().forcing(x, y);
468 else if (dim == 3)
469 f = DivGradExactSolution().forcing(x, y, z);
470
471 // Loop to integrate the scalar test functions (k) against the
472 // forcing function.
473 for (unsigned int k = 0; k != scalar_n_dofs; k++)
474 {
475 Fe(k + vector_n_dofs) -= JxW[qp]*f*scalar_phi[k][qp];
476 }
477 }
478
479 // We have now reached the end of the RHS summation. In addition,
480 // however, since the scalar variable is defined only up
481 // to an additive constant with purely Neumann boundary conditions, we
482 // constrain the integral of the scalar variable to the integral
483 // of the exact solution we seek.
484 {
485 // The location of the current quadrature point.
486 const Real x = q_point[qp](0);
487 const Real y = q_point[qp](1);
488 const Real z = q_point[qp](2);
489
490 // The value of the scalar variable.
491 Real scalar_value = 0;
492 if (dim == 2)
493 scalar_value = DivGradExactSolution().scalar(x, y);
494 else if (dim == 3)
495 scalar_value = DivGradExactSolution().scalar(x, y, z);
496
497 // A double loop to integrate the
498 // scalar test functions (k) against the Lagrange dof (n).
499 for (unsigned int k = 0; k != scalar_n_dofs; k++)
500 for (unsigned int n = 0; n != lambda_n_dofs; n++)
501 {
502 Ke(k + vector_n_dofs, n + vector_n_dofs + scalar_n_dofs) += JxW[qp]*scalar_phi[k][qp];
503 }
504
505 // A double loop to integrate the Lagrange dof (m) against the
506 // scalar trial functions (l).
507 for (unsigned int m = 0; m != lambda_n_dofs; m++)
508 for (unsigned int l = 0; l != scalar_n_dofs; l++)
509 {
510 Ke(m + vector_n_dofs + scalar_n_dofs, l + vector_n_dofs) += JxW[qp]*scalar_phi[l][qp];
511 }
512
513 // Loop to integrate the exact solution for the scalar variable.
514 for (unsigned int m = 0; m != lambda_n_dofs; m++)
515 {
516 Fe(m + vector_n_dofs + scalar_n_dofs) += JxW[qp]*scalar_value;
517 }
518 }
519 }
520
521 // We have now reached the end of the quadrature point loop, so
522 // the interior element integration has
523 // been completed. However, we have not yet addressed
524 // boundary conditions. For this Poisson example, we consider either
525 // Dirichlet or Neumann for the scalar solution field p. Note that in
526 // the mixed formulation a Neumann condition for p corresponds to a
527 // Dirichlet condition for u.
528 {
529
530 // The following loop is over the sides of the element.
531 // If the element has no neighbor on a side then that
532 // side MUST live on a boundary of the domain.
533 for (auto side : elem->side_index_range())
534 if (elem->neighbor_ptr(side) == nullptr)
535 {
536 // The value of the shape functions at the quadrature points.
537 const std::vector<std::vector<RealGradient>> & vector_phi_face = vector_fe_face->get_phi();
538
539 // The Jacobian * Quadrature Weight at the quadrature
540 // points on the face.
541 const std::vector<Real> & JxW_face = vector_fe_face->get_JxW();
542
543 // The XYZ locations (in physical space) of, and the normals at,
544 // the quadrature points on the face. This is where
545 // we will interpolate the boundary value function.
546 const std::vector<Point> & qface_point = vector_fe_face->get_xyz();
547 const std::vector<Point> & normals = vector_fe_face->get_normals();
548
549 // Compute the vector shape function values on the element face.
550 vector_fe_face->reinit(elem, side);
551
552 // Some shape functions will be 0 on the face, but for ease of
553 // indexing and generality of code we loop over them anyway.
554 libmesh_assert_equal_to (vector_n_dofs, vector_phi_face.size());
555
556 // Loop over the face quadrature points for integration.
557 for (unsigned int qp=0; qp<qface.n_points(); qp++)
558 {
559 // The location on the boundary of the current
560 // face quadrature point.
561 const Real xf = qface_point[qp](0);
562 const Real yf = qface_point[qp](1);
563 const Real zf = qface_point[qp](2);
564
565 if (neumann)
566 {
567 // The boundary value for the vector variable.
568 RealGradient vector_value;
569 if (dim == 2)
570 vector_value = DivGradExactSolution()(xf, yf);
571 else if (dim == 3)
572 vector_value = DivGradExactSolution()(xf, yf, zf);
573
574 // We use the penalty method to set the flux of the vector
575 // variable at the boundary, i.e. the RT vector boundary dof.
576 const Real penalty = 1.e10;
577
578 // A double loop to integrate the normal component of the
579 // vector test functions (i) against the normal component of
580 // the vector trial functions (j).
581 for (unsigned int i = 0; i != vector_n_dofs; i++)
582 for (unsigned int j = 0; j != vector_n_dofs; j++)
583 {
584 Ke(i, j) += JxW_face[qp]*penalty*vector_phi_face[i][qp]*
585 normals[qp]*vector_phi_face[j][qp]*normals[qp];
586 }
587
588 // Loop to integrate the normal component of the vector test
589 // functions (i) against the normal component of the
590 // exact solution for the vector variable.
591 for (unsigned int i = 0; i != vector_n_dofs; i++)
592 {
593 Fe(i) += JxW_face[qp]*penalty*vector_phi_face[i][qp]*normals[qp]*
594 vector_value*normals[qp];
595 }
596 }
597 else
598 {
599 // The boundary value for scalar field.
600 Real scalar_value = 0;
601 if (dim == 2)
602 scalar_value = DivGradExactSolution().scalar(xf, yf);
603 else if (dim == 3)
604 scalar_value = DivGradExactSolution().scalar(xf, yf, zf);
605
606 // Loop to integrate the normal component of the vector test
607 // functions (i) against the exact solution for the scalar variable.
608 for (unsigned int i = 0; i != vector_n_dofs; i++)
609 {
610 Fe(i) += -JxW_face[qp]*vector_phi_face[i][qp]*normals[qp]*scalar_value;
611 }
612 }
613 }
614 }
615 }
616
617 // We have now finished the quadrature point loop,
618 // and have therefore applied all the boundary conditions.
619
620 // If this assembly program were to be used on an adaptive mesh,
621 // we would have to apply any hanging node constraint equations.
622 dof_map.constrain_element_matrix_and_vector (Ke, Fe, dof_indices);
623
624 // The element matrix and right-hand-side are now built
625 // for this element. Add them to the global matrix and
626 // right-hand-side vector. The SparseMatrix::add_matrix()
627 // and NumericVector::add_vector() members do this for us.
628 matrix.add_matrix (Ke, dof_indices);
629 system.rhs->add_vector (Fe, dof_indices);
630 }
631
632 // All done!
633}
unsigned int dim
Real forcing(Real x, Real y)
Real scalar(Real x, Real y)
Defines a dense matrix for use in Finite Element-type computations.
void resize(const unsigned int new_m, const unsigned int new_n)
Resizes the matrix to the specified size and calls zero().
Defines a dense vector for use in Finite Element-type computations.
void resize(const unsigned int n)
Resize the vector.
This class handles the numbering of degrees of freedom on a mesh.
Definition dof_map.h:181
This is the EquationSystems class.
void print_info(std::ostream &os=libMesh::out) const
Prints information about the equation systems, by default to libMesh::out.
const MeshBase & get_mesh() const
Parameters parameters
Data structure holding arbitrary parameters.
virtual void init()
Initialize all the systems.
virtual System & add_system(std::string_view system_type, std::string_view name)
Add the system of type system_type named name to the systems array.
const T_sys & get_system(std::string_view name) const
This class handles the computation of the L2 and/or H1 error for the Systems in the EquationSystems o...
Real l2_error(std::string_view sys_name, std::string_view unknown_name)
Real error_norm(std::string_view sys_name, std::string_view unknown_name, const FEMNormType &norm)
void attach_exact_values(const std::vector< FunctionBase< Number > * > &f)
Clone and attach arbitrary functors which compute the exact values of the EquationSystems' solutions ...
Real hdiv_error(std::string_view sys_name, std::string_view unknown_name)
void compute_error(std::string_view sys_name, std::string_view unknown_name)
Computes and stores the error in the solution value e = u-u_h, the gradient grad(e) = grad(u) - grad(...
void extra_quadrature_order(const int extraorder)
Increases or decreases the order of the quadrature rule used for numerical integration.
void attach_exact_derivs(const std::vector< FunctionBase< Gradient > * > &g)
Clone and attach arbitrary functors which compute the exact gradients of the EquationSystems' solutio...
The ExodusII_IO class implements reading meshes in the ExodusII file format from Sandia National Labs...
Definition exodusII_io.h:53
virtual void write_equation_systems(const std::string &fname, const EquationSystems &es, const std::set< std::string > *system_names=nullptr) override
Writes out the solution for no specific time or timestep.
NumericVector< Number > * rhs
The system matrix.
static std::unique_ptr< FEGenericBase > build(const unsigned int dim, const FEType &type)
Builds a specific finite element type.
class FEType hides (possibly multiple) FEFamily and approximation orders, thereby enabling specialize...
Definition fe_type.h:197
Order default_quadrature_order() const
Definition fe_type.h:415
const SparseMatrix< Number > & get_system_matrix() const
The LibMeshInit class, when constructed, initializes the dependent libraries (e.g.
Definition libmesh.h:92
Manages consistently variables, degrees of freedom, coefficient vectors, matrices and linear solvers ...
This is the MeshBase class.
Definition mesh_base.h:81
unsigned int mesh_dimension() const
Definition mesh_base.C:430
void print_info(std::ostream &os=libMesh::out, const unsigned int verbosity=0, const bool global=true) const
Prints relevant information about the mesh.
Definition mesh_base.C:1755
The Mesh class is a thin wrapper, around the ReplicatedMesh class by default.
Definition mesh.h:51
virtual void add_vector(const T *v, const std::vector< numeric_index_type > &dof_indices)
Computes , where v is a pointer and each dof_indices[i] specifies where to add value v[i].
T & set(const std::string &)
Definition parameters.h:494
const T & get(std::string_view) const
Definition parameters.h:451
unsigned int n_points() const
Definition quadrature.h:131
This class implements specific orders of Gauss quadrature.
Generic sparse matrix.
virtual void add_matrix(const DenseMatrix< T > &dm, const std::vector< numeric_index_type > &rows, const std::vector< numeric_index_type > &cols)=0
Add the full matrix dm to the SparseMatrix.
unsigned int variable_number(std::string_view var) const
Definition system.C:1398
const DofMap & get_dof_map() const
Definition system.h:2417
MeshBase & mesh
void build_square(UnstructuredMesh &mesh, const unsigned int nx, const unsigned int ny, const Real xmin=0., const Real xmax=1., const Real ymin=0., const Real ymax=1., const ElemType type=INVALID_ELEM, const bool gauss_lobatto_grid=false)
A specialized build_cube() for 2D meshes.
void build_cube(UnstructuredMesh &mesh, const unsigned int nx=0, const unsigned int ny=0, const unsigned int nz=0, const Real xmin=0., const Real xmax=1., const Real ymin=0., const Real ymax=1., const Real zmin=0., const Real zmax=1., const ElemType type=INVALID_ELEM, const bool gauss_lobatto_grid=false)
Builds a (elements) cube.
void permute_elements(MeshBase &mesh)
Randomly permute the nodal ordering of each element (without twisting the element mapping).
The libMesh namespace provides an interface to certain functionality in the library.
SolverPackage default_solver_package()
Definition libmesh.C:1064
OStreamProxy out
DIE A HORRIBLE DEATH HERE typedef LIBMESH_DEFAULT_SCALAR_TYPE Real
void assemble_divgrad(EquationSystems &es, const std::string &system_name)
int main()