A class for performing independent Metropolis-Hastings MCMC decision making. More...

#include <IndependentMHDecision.h>

Inheritance diagram for IndependentMHDecision:

Public Types
typedef DataFileName	DataFileParameterType

Public Member Functions
	IndependentMHDecision (const InputParameters &parameters)

virtual void	initialize () override

virtual void	finalize () override

virtual void	execute () override

void	threadJoin (const UserObject &) final

bool	shouldStore () const override final

virtual Real	spatialValue (const Point &) const

virtual const std::vector< Point >	spatialPoints () const

void	setPrimaryThreadCopy (UserObject *primary)

UserObject *	primaryThreadCopy ()

SubProblem &	getSubProblem () const

bool	shouldDuplicateInitialExecution () const

void	gatherSum (T &value)

void	gatherMax (T &value)

void	gatherMin (T &value)

void	gatherProxyValueMax (T1 &proxy, T2 &value)

void	gatherProxyValueMin (T1 &proxy, T2 &value)

std::set< UserObjectName >	getDependObjects () const

const std::set< std::string > &	getRequestedItems () override

const std::set< std::string > &	getSuppliedItems () override

unsigned int	systemNumber () const

virtual bool	needThreadedCopy () const

virtual bool	enabled () const

std::shared_ptr< MooseObject >	getSharedPtr ()

std::shared_ptr< const MooseObject >	getSharedPtr () const

bool	isKokkosObject () const

MooseApp &	getMooseApp () const

const std::string &	type () const

const std::string &	name () const

std::string	typeAndName () const

MooseObjectParameterName	uniqueParameterName (const std::string &parameter_name) const

MooseObjectName	uniqueName () const

const InputParameters &	parameters () const

const hit::Node *	getHitNode () const

bool	hasBase () const

const std::string &	getBase () const

const T &	getParam (const std::string &name) const

std::vector< std::pair< T1, T2 > >	getParam (const std::string &param1, const std::string &param2) const

const T *	queryParam (const std::string &name) const

const T &	getRenamedParam (const std::string &old_name, const std::string &new_name) const

T	getCheckedPointerParam (const std::string &name, const std::string &error_string="") const

bool	isParamValid (const std::string &name) const

bool	isParamSetByUser (const std::string &name) const

void	connectControllableParams (const std::string &parameter, const std::string &object_type, const std::string &object_name, const std::string &object_parameter) const

void	paramError (const std::string &param, Args... args) const

void	paramWarning (const std::string &param, Args... args) const

void	paramWarning (const std::string &param, Args... args) const

void	paramInfo (const std::string &param, Args... args) const

std::string	messagePrefix (const bool hit_prefix=true) const

std::string	errorPrefix (const std::string &) const

void	mooseError (Args &&... args) const

void	mooseDocumentedError (const std::string &repo_name, const unsigned int issue_num, Args &&... args) const

void	mooseErrorNonPrefixed (Args &&... args) const

void	mooseWarning (Args &&... args) const

void	mooseWarning (Args &&... args) const

void	mooseWarningNonPrefixed (Args &&... args) const

void	mooseWarningNonPrefixed (Args &&... args) const

void	mooseDeprecated (Args &&... args) const

void	mooseDeprecated (Args &&... args) const

void	mooseDeprecatedNoTrace (Args &&... args) const

void	mooseInfo (Args &&... args) const

void	callMooseError (std::string msg, const bool with_prefix, const hit::Node *node=nullptr, const bool show_trace=true) const

std::string	getDataFileName (const std::string &param) const

std::string	getDataFileNameByName (const std::string &relative_path) const

std::string	getDataFilePath (const std::string &relative_path) const

virtual void	initialSetup ()

virtual void	timestepSetup ()

virtual void	jacobianSetup ()

virtual void	residualSetup ()

virtual void	customSetup (const ExecFlagType &)

const ExecFlagEnum &	getExecuteOnEnum () const

UserObjectName	getUserObjectName (const std::string &param_name) const

const T &	getUserObject (const std::string &param_name, bool is_dependency=true) const

const T &	getUserObjectByName (const UserObjectName &object_name, bool is_dependency=true) const

const UserObjectBase &	getUserObjectBase (const std::string &param_name, bool is_dependency=true) const

const UserObjectBase &	getUserObjectBaseByName (const UserObjectName &object_name, bool is_dependency=true) const

const std::vector< MooseVariableScalar * > &	getCoupledMooseScalarVars ()

const std::set< TagID > &	getScalarVariableCoupleableVectorTags () const

const std::set< TagID > &	getScalarVariableCoupleableMatrixTags () const

const GenericMaterialProperty< T, is_ad > &	getGenericMaterialProperty (const std::string &name, MaterialData &material_data, const unsigned int state=0)

const GenericMaterialProperty< T, is_ad > &	getGenericMaterialProperty (const std::string &name, const unsigned int state=0)

const GenericMaterialProperty< T, is_ad > &	getGenericMaterialProperty (const std::string &name, const unsigned int state=0)

const MaterialProperty< T > &	getMaterialProperty (const std::string &name, MaterialData &material_data, const unsigned int state=0)

const MaterialProperty< T > &	getMaterialProperty (const std::string &name, const unsigned int state=0)

const MaterialProperty< T > &	getMaterialProperty (const std::string &name, const unsigned int state=0)

const ADMaterialProperty< T > &	getADMaterialProperty (const std::string &name, MaterialData &material_data)

const ADMaterialProperty< T > &	getADMaterialProperty (const std::string &name)

const ADMaterialProperty< T > &	getADMaterialProperty (const std::string &name)

const MaterialProperty< T > &	getMaterialPropertyOld (const std::string &name, MaterialData &material_data)

const MaterialProperty< T > &	getMaterialPropertyOld (const std::string &name)

const MaterialProperty< T > &	getMaterialPropertyOld (const std::string &name)

const MaterialProperty< T > &	getMaterialPropertyOlder (const std::string &name, MaterialData &material_data)

const MaterialProperty< T > &	getMaterialPropertyOlder (const std::string &name)

const MaterialProperty< T > &	getMaterialPropertyOlder (const std::string &name)

const GenericMaterialProperty< T, is_ad > &	getGenericMaterialPropertyByName (const MaterialPropertyName &name, MaterialData &material_data, const unsigned int state)

const GenericMaterialProperty< T, is_ad > &	getGenericMaterialPropertyByName (const MaterialPropertyName &name, const unsigned int state=0)

const GenericMaterialProperty< T, is_ad > &	getGenericMaterialPropertyByName (const MaterialPropertyName &name, const unsigned int state=0)

const MaterialProperty< T > &	getMaterialPropertyByName (const MaterialPropertyName &name, MaterialData &material_data, const unsigned int state=0)

const MaterialProperty< T > &	getMaterialPropertyByName (const MaterialPropertyName &name, const unsigned int state=0)

const MaterialProperty< T > &	getMaterialPropertyByName (const MaterialPropertyName &name, const unsigned int state=0)

const ADMaterialProperty< T > &	getADMaterialPropertyByName (const MaterialPropertyName &name, MaterialData &material_data)

const ADMaterialProperty< T > &	getADMaterialPropertyByName (const MaterialPropertyName &name)

const ADMaterialProperty< T > &	getADMaterialPropertyByName (const MaterialPropertyName &name)

const MaterialProperty< T > &	getMaterialPropertyOldByName (const MaterialPropertyName &name, MaterialData &material_data)

const MaterialProperty< T > &	getMaterialPropertyOldByName (const MaterialPropertyName &name)

const MaterialProperty< T > &	getMaterialPropertyOldByName (const MaterialPropertyName &name)

const MaterialProperty< T > &	getMaterialPropertyOlderByName (const MaterialPropertyName &name, MaterialData &material_data)

const MaterialProperty< T > &	getMaterialPropertyOlderByName (const MaterialPropertyName &name)

const MaterialProperty< T > &	getMaterialPropertyOlderByName (const MaterialPropertyName &name)

Moose::Kokkos::MaterialProperty< T, dimension >	getKokkosMaterialPropertyByName (const std::string &prop_name_in)

Moose::Kokkos::MaterialProperty< T, dimension >	getKokkosMaterialPropertyOldByName (const std::string &prop_name)

Moose::Kokkos::MaterialProperty< T, dimension >	getKokkosMaterialPropertyOlderByName (const std::string &prop_name)

Moose::Kokkos::MaterialProperty< T, dimension >	getKokkosMaterialProperty (const std::string &name)

Moose::Kokkos::MaterialProperty< T, dimension >	getKokkosMaterialPropertyOld (const std::string &name)

Moose::Kokkos::MaterialProperty< T, dimension >	getKokkosMaterialPropertyOlder (const std::string &name)

std::pair< const MaterialProperty< T > *, std::set< SubdomainID > >	getBlockMaterialProperty (const MaterialPropertyName &name)

std::pair< Moose::Kokkos::MaterialProperty< T, dimension >, std::set< SubdomainID > >	getKokkosBlockMaterialProperty (const MaterialPropertyName &name)

const GenericMaterialProperty< T, is_ad > &	getGenericZeroMaterialProperty (const std::string &name)

const GenericMaterialProperty< T, is_ad > &	getGenericZeroMaterialProperty ()

const GenericMaterialProperty< T, is_ad > &	getGenericZeroMaterialPropertyByName (const std::string &prop_name)

const MaterialProperty< T > &	getZeroMaterialProperty (Ts... args)

std::set< SubdomainID >	getMaterialPropertyBlocks (const std::string &name)

std::vector< SubdomainName >	getMaterialPropertyBlockNames (const std::string &name)

std::set< BoundaryID >	getMaterialPropertyBoundaryIDs (const std::string &name)

std::vector< BoundaryName >	getMaterialPropertyBoundaryNames (const std::string &name)

void	checkBlockAndBoundaryCompatibility (std::shared_ptr< MaterialBase > discrete)

std::unordered_map< SubdomainID, std::vector< MaterialBase * > >	buildRequiredMaterials (bool allow_stateful=true)

void	statefulPropertiesAllowed (bool)

virtual bool	getMaterialPropertyCalled () const

virtual const std::unordered_set< unsigned int > &	getMatPropDependencies () const

virtual void	resolveOptionalProperties ()

const GenericMaterialProperty< T, is_ad > &	getPossiblyConstantGenericMaterialPropertyByName (const MaterialPropertyName &prop_name, MaterialData &material_data, const unsigned int state)

bool	isImplicit ()

Moose::StateArg	determineState () const

virtual void	store (nlohmann::json &json) const

virtual void	declareLateValues ()

void	buildOutputHideVariableList (std::set< std::string > variable_names)

const std::set< OutputName > &	getOutputs ()

virtual void	subdomainSetup () override

virtual void	subdomainSetup () override

bool	hasUserObject (const std::string &param_name) const

bool	hasUserObject (const std::string &param_name) const

bool	hasUserObject (const std::string &param_name) const

bool	hasUserObject (const std::string &param_name) const

bool	hasUserObjectByName (const UserObjectName &object_name) const

bool	hasUserObjectByName (const UserObjectName &object_name) const

bool	hasUserObjectByName (const UserObjectName &object_name) const

bool	hasUserObjectByName (const UserObjectName &object_name) const

const GenericOptionalMaterialProperty< T, is_ad > &	getGenericOptionalMaterialProperty (const std::string &name, const unsigned int state=0)

const GenericOptionalMaterialProperty< T, is_ad > &	getGenericOptionalMaterialProperty (const std::string &name, const unsigned int state=0)

const OptionalMaterialProperty< T > &	getOptionalMaterialProperty (const std::string &name, const unsigned int state=0)

const OptionalMaterialProperty< T > &	getOptionalMaterialProperty (const std::string &name, const unsigned int state=0)

const OptionalADMaterialProperty< T > &	getOptionalADMaterialProperty (const std::string &name)

const OptionalADMaterialProperty< T > &	getOptionalADMaterialProperty (const std::string &name)

const OptionalMaterialProperty< T > &	getOptionalMaterialPropertyOld (const std::string &name)

const OptionalMaterialProperty< T > &	getOptionalMaterialPropertyOld (const std::string &name)

const OptionalMaterialProperty< T > &	getOptionalMaterialPropertyOlder (const std::string &name)

const OptionalMaterialProperty< T > &	getOptionalMaterialPropertyOlder (const std::string &name)

MaterialBase &	getMaterial (const std::string &name)

MaterialBase &	getMaterial (const std::string &name)

MaterialBase &	getMaterialByName (const std::string &name, bool no_warn=false)

MaterialBase &	getMaterialByName (const std::string &name, bool no_warn=false)

bool	hasMaterialProperty (const std::string &name)

bool	hasMaterialProperty (const std::string &name)

bool	hasMaterialPropertyByName (const std::string &name)

bool	hasMaterialPropertyByName (const std::string &name)

bool	hasADMaterialProperty (const std::string &name)

bool	hasADMaterialProperty (const std::string &name)

bool	hasADMaterialPropertyByName (const std::string &name)

bool	hasADMaterialPropertyByName (const std::string &name)

bool	hasKokkosMaterialProperty (const std::string &name)

bool	hasKokkosMaterialProperty (const std::string &name)

bool	hasKokkosMaterialPropertyByName (const std::string &name)

bool	hasKokkosMaterialPropertyByName (const std::string &name)

bool	hasGenericMaterialProperty (const std::string &name)

bool	hasGenericMaterialProperty (const std::string &name)

bool	hasGenericMaterialPropertyByName (const std::string &name)

bool	hasGenericMaterialPropertyByName (const std::string &name)

const Function &	getFunction (const std::string &name) const

const Function &	getFunctionByName (const FunctionName &name) const

bool	hasFunction (const std::string &param_name) const

bool	hasFunctionByName (const FunctionName &name) const

Moose::Kokkos::Function	getKokkosFunction (const std::string &name) const

const T &	getKokkosFunction (const std::string &name) const

Moose::Kokkos::Function	getKokkosFunctionByName (const FunctionName &name) const

const T &	getKokkosFunctionByName (const FunctionName &name) const

bool	hasKokkosFunction (const std::string &param_name) const

bool	hasKokkosFunctionByName (const FunctionName &name) const

bool	isDefaultPostprocessorValue (const std::string &param_name, const unsigned int index=0) const

bool	hasPostprocessor (const std::string &param_name, const unsigned int index=0) const

bool	hasPostprocessorByName (const PostprocessorName &name) const

std::size_t	coupledPostprocessors (const std::string &param_name) const

const PostprocessorName &	getPostprocessorName (const std::string &param_name, const unsigned int index=0) const

const VectorPostprocessorValue &	getVectorPostprocessorValue (const std::string &param_name, const std::string &vector_name) const

const VectorPostprocessorValue &	getVectorPostprocessorValue (const std::string &param_name, const std::string &vector_name, bool needs_broadcast) const

const VectorPostprocessorValue &	getVectorPostprocessorValueByName (const VectorPostprocessorName &name, const std::string &vector_name) const

const VectorPostprocessorValue &	getVectorPostprocessorValueByName (const VectorPostprocessorName &name, const std::string &vector_name, bool needs_broadcast) const

const VectorPostprocessorValue &	getVectorPostprocessorValueOld (const std::string &param_name, const std::string &vector_name) const

const VectorPostprocessorValue &	getVectorPostprocessorValueOld (const std::string &param_name, const std::string &vector_name, bool needs_broadcast) const

const VectorPostprocessorValue &	getVectorPostprocessorValueOldByName (const VectorPostprocessorName &name, const std::string &vector_name) const

const VectorPostprocessorValue &	getVectorPostprocessorValueOldByName (const VectorPostprocessorName &name, const std::string &vector_name, bool needs_broadcast) const

const ScatterVectorPostprocessorValue &	getScatterVectorPostprocessorValue (const std::string &param_name, const std::string &vector_name) const

const ScatterVectorPostprocessorValue &	getScatterVectorPostprocessorValueByName (const VectorPostprocessorName &name, const std::string &vector_name) const

const ScatterVectorPostprocessorValue &	getScatterVectorPostprocessorValueOld (const std::string &param_name, const std::string &vector_name) const

const ScatterVectorPostprocessorValue &	getScatterVectorPostprocessorValueOldByName (const VectorPostprocessorName &name, const std::string &vector_name) const

bool	hasVectorPostprocessor (const std::string &param_name, const std::string &vector_name) const

bool	hasVectorPostprocessor (const std::string &param_name) const

bool	hasVectorPostprocessorByName (const VectorPostprocessorName &name, const std::string &vector_name) const

bool	hasVectorPostprocessorByName (const VectorPostprocessorName &name) const

const VectorPostprocessorName &	getVectorPostprocessorName (const std::string &param_name) const

T &	getSampler (const std::string &name)

Sampler &	getSampler (const std::string &name)

T &	getSamplerByName (const SamplerName &name)

Sampler &	getSamplerByName (const SamplerName &name)

virtual void	meshChanged ()

virtual void	meshDisplaced ()

PerfGraph &	perfGraph ()

const PostprocessorValue &	getPostprocessorValue (const std::string &param_name, const unsigned int index=0) const

const PostprocessorValue &	getPostprocessorValue (const std::string &param_name, const unsigned int index=0) const

const PostprocessorValue &	getPostprocessorValueOld (const std::string &param_name, const unsigned int index=0) const

const PostprocessorValue &	getPostprocessorValueOld (const std::string &param_name, const unsigned int index=0) const

const PostprocessorValue &	getPostprocessorValueOlder (const std::string &param_name, const unsigned int index=0) const

const PostprocessorValue &	getPostprocessorValueOlder (const std::string &param_name, const unsigned int index=0) const

virtual const PostprocessorValue &	getPostprocessorValueByName (const PostprocessorName &name) const

virtual const PostprocessorValue &	getPostprocessorValueByName (const PostprocessorName &name) const

const PostprocessorValue &	getPostprocessorValueOldByName (const PostprocessorName &name) const

const PostprocessorValue &	getPostprocessorValueOldByName (const PostprocessorName &name) const

const PostprocessorValue &	getPostprocessorValueOlderByName (const PostprocessorName &name) const

const PostprocessorValue &	getPostprocessorValueOlderByName (const PostprocessorName &name) const

bool	isVectorPostprocessorDistributed (const std::string &param_name) const

bool	isVectorPostprocessorDistributed (const std::string &param_name) const

bool	isVectorPostprocessorDistributedByName (const VectorPostprocessorName &name) const

bool	isVectorPostprocessorDistributedByName (const VectorPostprocessorName &name) const

const Distribution &	getDistribution (const std::string &name) const

const T &	getDistribution (const std::string &name) const

const Distribution &	getDistribution (const std::string &name) const

const T &	getDistribution (const std::string &name) const

const Distribution &	getDistributionByName (const DistributionName &name) const

const T &	getDistributionByName (const std::string &name) const

const Distribution &	getDistributionByName (const DistributionName &name) const

const T &	getDistributionByName (const std::string &name) const

const Parallel::Communicator &	comm () const

processor_id_type	n_processors () const

processor_id_type	processor_id () const

Static Public Member Functions
static InputParameters	validParams ()

static void	callMooseError (MooseApp const app, const InputParameters &params, std::string msg, const bool with_prefix, const hit::Node node, const bool show_trace=true)

static void	sort (typename std::vector< T > &vector)

static void	sortDFS (typename std::vector< T > &vector)

static void	cyclicDependencyError (CyclicDependencyException< T2 > &e, const std::string &header, NameFunc &&name_func)

static void	cyclicDependencyError (CyclicDependencyException< T2 > &e, const std::string &header)

Public Attributes
	usingCombinedWarningSolutionWarnings

const ConsoleStream	_console

Static Public Attributes
static const std::string	type_param

static const std::string	name_param

static const std::string	unique_name_param

static const std::string	app_param

static const std::string	moose_base_param

static const std::string	kokkos_object_param

static constexpr PropertyValue::id_type	default_property_id

static constexpr PropertyValue::id_type	zero_property_id

static constexpr auto	SYSTEM

static constexpr auto	NAME

Protected Member Functions
virtual void	computeEvidence (std::vector< Real > &evidence, const DenseMatrix< Real > &input_matrix) override
	Compute the evidence (aka, betterness of the proposed sample vs the previous)

virtual void	computeTransitionVector (std::vector< Real > &tv, const std::vector< Real > &evidence) override
	Compute the transition probability vector (after the computation of evidence)

virtual void	nextSamples (std::vector< Real > &req_inputs, DenseMatrix< Real > &input_matrix, const std::vector< Real > &tv, const unsigned int &parallel_index) override
	Resample inputs given the transition vector (after transition vector computed)

virtual void	nextSeeds () override
	Compute the next set of seeds to facilitate proposals.

virtual bool	usingGP () const
	Flag to specify if a pre-trained Gaussian process model is used.

virtual void	addPostprocessorDependencyHelper (const PostprocessorName &name) const override

virtual void	addVectorPostprocessorDependencyHelper (const VectorPostprocessorName &name) const override

virtual void	addUserObjectDependencyHelper (const UserObjectBase &uo) const override

void	addReporterDependencyHelper (const ReporterName &reporter_name) override

void	flagInvalidSolutionInternal (const InvalidSolutionID invalid_solution_id) const

InvalidSolutionID	registerInvalidSolutionInternal (const std::string &message, const bool warning) const

const ReporterContextBase &	getReporterContextBaseByName (const ReporterName &reporter_name) const

const ReporterName &	getReporterName (const std::string &param_name) const

T &	declareRestartableData (const std::string &data_name, Args &&... args)

ManagedValue< T >	declareManagedRestartableDataWithContext (const std::string &data_name, void *context, Args &&... args)

const T &	getRestartableData (const std::string &data_name) const

T &	declareRestartableDataWithContext (const std::string &data_name, void *context, Args &&... args)

T &	declareRecoverableData (const std::string &data_name, Args &&... args)

T &	declareRestartableDataWithObjectName (const std::string &data_name, const std::string &object_name, Args &&... args)

T &	declareRestartableDataWithObjectNameWithContext (const std::string &data_name, const std::string &object_name, void *context, Args &&... args)

std::string	restartableName (const std::string &data_name) const

const T &	getMeshProperty (const std::string &data_name, const std::string &prefix)

const T &	getMeshProperty (const std::string &data_name)

bool	hasMeshProperty (const std::string &data_name, const std::string &prefix) const

bool	hasMeshProperty (const std::string &data_name, const std::string &prefix) const

bool	hasMeshProperty (const std::string &data_name) const

bool	hasMeshProperty (const std::string &data_name) const

std::string	meshPropertyName (const std::string &data_name) const

PerfID	registerTimedSection (const std::string &section_name, const unsigned int level) const

PerfID	registerTimedSection (const std::string &section_name, const unsigned int level, const std::string &live_message, const bool print_dots=true) const

std::string	timedSectionName (const std::string &section_name) const

bool	isCoupledScalar (const std::string &var_name, unsigned int i=0) const

unsigned int	coupledScalarComponents (const std::string &var_name) const

unsigned int	coupledScalar (const std::string &var_name, unsigned int comp=0) const

libMesh::Order	coupledScalarOrder (const std::string &var_name, unsigned int comp=0) const

const VariableValue &	coupledScalarValue (const std::string &var_name, unsigned int comp=0) const

const ADVariableValue &	adCoupledScalarValue (const std::string &var_name, unsigned int comp=0) const

const GenericVariableValue< is_ad > &	coupledGenericScalarValue (const std::string &var_name, unsigned int comp=0) const

const GenericVariableValue< false > &	coupledGenericScalarValue (const std::string &var_name, const unsigned int comp) const

const GenericVariableValue< true > &	coupledGenericScalarValue (const std::string &var_name, const unsigned int comp) const

const VariableValue &	coupledVectorTagScalarValue (const std::string &var_name, const std::string &tag_param_name, unsigned int comp=0) const

const VariableValue &	coupledMatrixTagScalarValue (const std::string &var_name, const std::string &tag_param_name, unsigned int comp=0) const

const VariableValue &	coupledScalarValueOld (const std::string &var_name, unsigned int comp=0) const

const VariableValue &	coupledScalarValueOlder (const std::string &var_name, unsigned int comp=0) const

const VariableValue &	coupledScalarDot (const std::string &var_name, unsigned int comp=0) const

const ADVariableValue &	adCoupledScalarDot (const std::string &var_name, unsigned int comp=0) const

const VariableValue &	coupledScalarDotDot (const std::string &var_name, unsigned int comp=0) const

const VariableValue &	coupledScalarDotOld (const std::string &var_name, unsigned int comp=0) const

const VariableValue &	coupledScalarDotDotOld (const std::string &var_name, unsigned int comp=0) const

const VariableValue &	coupledScalarDotDu (const std::string &var_name, unsigned int comp=0) const

const VariableValue &	coupledScalarDotDotDu (const std::string &var_name, unsigned int comp=0) const

Moose::Kokkos::VariableValue	kokkosCoupledVectorTagScalarValueByName (const std::string &var_name, const std::string &tag_name, unsigned int comp=0) const

Moose::Kokkos::VariableValue	kokkosCoupledVectorTagScalarValue (const std::string &var_name, const std::string &tag_param_name, unsigned int comp=0) const

Moose::Kokkos::VariableValue	kokkosCoupledScalarValue (const std::string &var_name, unsigned int comp=0) const

Moose::Kokkos::VariableValue	kokkosCoupledScalarValueOld (const std::string &var_name, unsigned int comp=0) const

Moose::Kokkos::VariableValue	kokkosCoupledScalarValueOlder (const std::string &var_name, unsigned int comp=0) const

Moose::Kokkos::VariableValue	kokkosCoupledScalarDot (const std::string &var_name, unsigned int comp=0) const

Moose::Kokkos::Scalar< const Real >	kokkosCoupledScalarDotDu (const std::string &var_name, unsigned int comp=0) const

const MooseVariableScalar *	getScalarVar (const std::string &var_name, unsigned int comp) const

virtual void	checkMaterialProperty (const std::string &name, const unsigned int state)

virtual void	getKokkosMaterialPropertyHook (const std::string &, const unsigned int)

void	markMatPropRequested (const std::string &)

MaterialPropertyName	getMaterialPropertyName (const std::string &name) const

void	checkExecutionStage ()

T &	declareUnusedValue (Args &&... args)

const T &	getReporterValue (const std::string &param_name, const std::size_t time_index=0)

const T &	getReporterValue (const std::string &param_name, ReporterMode mode, const std::size_t time_index=0)

const T &	getReporterValue (const std::string &param_name, const std::size_t time_index=0)

const T &	getReporterValue (const std::string &param_name, ReporterMode mode, const std::size_t time_index=0)

const T &	getReporterValueByName (const ReporterName &reporter_name, const std::size_t time_index=0)

const T &	getReporterValueByName (const ReporterName &reporter_name, ReporterMode mode, const std::size_t time_index=0)

const T &	getReporterValueByName (const ReporterName &reporter_name, const std::size_t time_index=0)

const T &	getReporterValueByName (const ReporterName &reporter_name, ReporterMode mode, const std::size_t time_index=0)

bool	hasReporterValue (const std::string &param_name) const

bool	hasReporterValue (const std::string &param_name) const

bool	hasReporterValue (const std::string &param_name) const

bool	hasReporterValue (const std::string &param_name) const

bool	hasReporterValueByName (const ReporterName &reporter_name) const

bool	hasReporterValueByName (const ReporterName &reporter_name) const

bool	hasReporterValueByName (const ReporterName &reporter_name) const

bool	hasReporterValueByName (const ReporterName &reporter_name) const

const GenericMaterialProperty< T, is_ad > *	defaultGenericMaterialProperty (const std::string &name)

const GenericMaterialProperty< T, is_ad > *	defaultGenericMaterialProperty (const std::string &name)

const MaterialProperty< T > *	defaultMaterialProperty (const std::string &name)

const MaterialProperty< T > *	defaultMaterialProperty (const std::string &name)

const ADMaterialProperty< T > *	defaultADMaterialProperty (const std::string &name)

const ADMaterialProperty< T > *	defaultADMaterialProperty (const std::string &name)

T &	declareValue (const std::string &param_name, Args &&... args)

T &	declareValue (const std::string &param_name, ReporterMode mode, Args &&... args)

T &	declareValue (const std::string &param_name, Args &&... args)

T &	declareValue (const std::string &param_name, ReporterMode mode, Args &&... args)

T &	declareValue (const std::string &param_name, Args &&... args)

T &	declareValue (const std::string &param_name, ReporterMode mode, Args &&... args)

T &	declareValue (const std::string &param_name, Args &&... args)

T &	declareValue (const std::string &param_name, ReporterMode mode, Args &&... args)

T &	declareValueByName (const ReporterValueName &value_name, Args &&... args)

T &	declareValueByName (const ReporterValueName &value_name, ReporterMode mode, Args &&... args)

T &	declareValueByName (const ReporterValueName &value_name, Args &&... args)

T &	declareValueByName (const ReporterValueName &value_name, ReporterMode mode, Args &&... args)

T &	declareValueByName (const ReporterValueName &value_name, Args &&... args)

T &	declareValueByName (const ReporterValueName &value_name, ReporterMode mode, Args &&... args)

T &	declareValueByName (const ReporterValueName &value_name, Args &&... args)

T &	declareValueByName (const ReporterValueName &value_name, ReporterMode mode, Args &&... args)

LikelihoodFunctionBase *	getLikelihoodFunctionByName (const UserObjectName &name) const
	Lookup a LikelihoodFunction object by name and return pointer.

Static Protected Member Functions
static std::string	meshPropertyName (const std::string &data_name, const std::string &prefix)

Protected Attributes
std::vector< std::vector< Real > > &	_inputs
	Model input data that is uncertain.

std::vector< Real > &	_tpm
	Transition probability matrix.

std::vector< Real > &	_variance
	Model variance term.

Real &	_noise
	Model noise term to pass to Likelihoods object.

std::vector< const LikelihoodFunctionBase * >	_likelihoods
	Storage for the likelihood objects to be utilized.

Sampler &	_sampler
	The MCMC sampler.

const PMCMCBase *const	_pmcmc
	MCMC sampler base.

dof_id_type	_props
	Storage for the number of parallel proposals.

const std::vector< Real > &	_rnd_vec
	Storage for the random numbers for decision making.

const std::vector< Real > &	_new_var_samples
	Storage for new proposed variance samples.

const std::vector< const Distribution * >	_priors
	Storage for the priors.

const Distribution *	_var_prior
	Storage for the prior over the variance.

std::vector< Real > *	_outputs_required
	Transfer the right outputs to the file.

dof_id_type	_num_confg_values
	Storage for the number of experimental configuration values.

dof_id_type	_num_confg_params
	Storage for the number of experimental configuration parameters.

DenseMatrix< Real > &	_data_prev
	Storage for previous inputs.

std::vector< Real > &	_var_prev
	Storage for previous variances.

std::vector< Real > &	_outputs_prev
	Storage for previous outputs.

const std::vector< Real > *	_output_value
	Current output values.

int &	_check_step
	Ensure that the MCMC algorithm proceeds in a sequential fashion.

const Moose::CoordinateSystemType &	_coord_sys

const THREAD_ID	_tid

SubProblem &	_subproblem

FEProblemBase &	_fe_problem

SystemBase &	_sys

Assembly &	_assembly

const bool	_duplicate_initial_execution

std::set< std::string >	_depend_uo

const bool &	_enabled

MooseApp &	_app

Factory &	_factory

ActionFactory &	_action_factory

const std::string &	_type

const std::string &	_name

const InputParameters &	_pars

const ExecFlagEnum &	_execute_enum

const ExecFlagType &	_current_execute_flag

MooseApp &	_restartable_app

const std::string	_restartable_system_name

const THREAD_ID	_restartable_tid

const bool	_restartable_read_only

FEProblemBase &	_mci_feproblem

FEProblemBase &	_mdi_feproblem

MooseApp &	_pg_moose_app

const std::string	_prefix

FEProblemBase &	_sc_fe_problem

const THREAD_ID	_sc_tid

const Real &	_real_zero

const VariableValue &	_scalar_zero

const Point &	_point_zero

const InputParameters &	_mi_params

const std::string	_mi_name

const MooseObjectName	_mi_moose_object_name

FEProblemBase &	_mi_feproblem

SubProblem &	_mi_subproblem

const THREAD_ID	_mi_tid

const bool	_is_kokkos_object

const Moose::MaterialDataType	_material_data_type

MaterialData &	_material_data

bool	_stateful_allowed

bool	_get_material_property_called

std::vector< std::unique_ptr< PropertyValue > >	_default_properties

std::unordered_set< unsigned int >	_material_property_dependencies

const MaterialPropertyName	_get_suffix

const bool	_use_interpolated_state

const InputParameters &	_ti_params

FEProblemBase &	_ti_feproblem

bool	_is_implicit

Real &	_t

const Real &	_t_old

int &	_t_step

Real &	_dt

Real &	_dt_old

bool	_is_transient

const Parallel::Communicator &	_communicator

Static Protected Attributes
static const std::string	_interpolated_old

static const std::string	_interpolated_older

Private Member Functions
const Moose::FunctionBase *	getKokkosFunctionByNameHelper (const FunctionName &name) const

const UserObjectBase &	getUserObjectFromFEProblem (const UserObjectName &object_name, const THREAD_ID tid=0) const

const T &	castUserObject (const UserObjectBase &uo_base, const std::string &param_name="") const

void	mooseObjectError (const std::string &param_name, std::stringstream &oss) const

const std::string &	userObjectType (const UserObjectBase &uo) const

const std::string &	userObjectName (const UserObjectBase &uo) const

const PostprocessorName &	getPostprocessorNameInternal (const std::string &param_name, const unsigned int index, const bool allow_default_value=true) const

bool	isDefaultPostprocessorValueByName (const PostprocessorName &name) const

PostprocessorValue	getDefaultPostprocessorValueByName (const PostprocessorName &name) const

void	checkParam (const std::string &param_name, const unsigned int index=std::numeric_limits< unsigned int >::max()) const

bool	postprocessorsAdded () const

const VectorPostprocessorValue &	getVectorPostprocessorByNameHelper (const VectorPostprocessorName &name, const std::string &vector_name, bool broadcast, std::size_t t_index) const

const VectorPostprocessorContext< VectorPostprocessorValue > &	getVectorPostprocessorContextByNameHelper (const VectorPostprocessorName &name, const std::string &vector_name) const

bool	vectorPostprocessorsAdded () const

bool	reportersAdded () const

void	possiblyCheckHasReporter (const ReporterName &reporter_name, const std::string &param_name="") const

RestartableDataValue &	registerRestartableDataOnApp (std::unique_ptr< RestartableDataValue > data, THREAD_ID tid) const

void	registerRestartableNameWithFilterOnApp (const std::string &name, Moose::RESTARTABLE_FILTER filter)

RestartableData< T > &	declareRestartableDataHelper (const std::string &data_name, void *context, Args &&... args) const

virtual std::string	meshPropertyPrefix (const std::string &data_name) const

const RestartableDataValue &	getMeshPropertyInternal (const std::string &data_name, const std::string &prefix) const

void	mooseErrorInternal (Args &&... args) const

const VariableValue *	getDefaultValue (const std::string &var_name) const

const ADVariableValue *	getADDefaultValue (const std::string &var_name) const

void	checkVar (const std::string &var_name) const

void	validateExecutionerType (const std::string &name, const std::string &fn_name) const

Moose::Kokkos::Variable	kokkosCoupledVectorTagScalarVariable (const std::string &var_name, const std::string &tag_name, unsigned int comp) const

Moose::MaterialDataType	getMaterialDataType (const std::set< BoundaryID > &boundary_ids) const

unsigned int	getMaxQps () const

void	addConsumedPropertyName (const MooseObjectName &obj_name, const std::string &prop_name)

const ReporterValueName &	getReporterValueName (const std::string &param_name) const

const PostprocessorValue &	getPostprocessorValueInternal (const std::string &param_name, unsigned int index, std::size_t t_index) const

const PostprocessorValue &	getPostprocessorValueInternal (const std::string &param_name, unsigned int index, std::size_t t_index) const

const PostprocessorValue &	getPostprocessorValueByNameInternal (const PostprocessorName &name, std::size_t t_index) const

const PostprocessorValue &	getPostprocessorValueByNameInternal (const PostprocessorName &name, std::size_t t_index) const

void	possiblyCheckHasVectorPostprocessor (const std::string &param_name, const std::string &vector_name) const

void	possiblyCheckHasVectorPostprocessor (const std::string &param_name, const std::string &vector_name) const

void	possiblyCheckHasVectorPostprocessorByName (const VectorPostprocessorName &name, const std::string &vector_name) const

void	possiblyCheckHasVectorPostprocessorByName (const VectorPostprocessorName &name, const std::string &vector_name) const

Static Private Member Functions
static const hit::Node *	getHitNode (const InputParameters &params)

static std::string	messagePrefix (const InputParameters &params, const bool hit_prefix)

Private Attributes
const IndependentGaussianMH *const	_igmh
	IndependentGaussianMH sampler.

std::vector< Real > &	_seed_input
	Seed vector input for proposing new samples.

std::vector< Real > &	_seed_outputs
	Outputs corresponding to the seed input vector.

std::vector< Real >	_tpm_modified
	Modified transition vector considering the seed input.

std::vector< Real >	_outputs_sto
	Store the gathered outputs.

const bool	_always_store

UserObject *	_primary_thread_copy

std::set< std::string >	_supplied_uo

const ParallelParamObject &	_parent

const MooseBase &	_si_moose_base

const FEProblemBase *	_si_problem

ExecFlagEnum	_empty_execute_enum

const MooseObject &	_fni_object

const InputParameters &	_fni_params

FEProblemBase &	_fni_feproblem

const THREAD_ID	_fni_tid

const MooseObject &	_uoi_moose_object

const FEProblemBase &	_uoi_feproblem

const THREAD_ID	_uoi_tid

const MooseObject &	_ppi_moose_object

const InputParameters &	_ppi_params

const FEProblemBase &	_ppi_feproblem

std::map< PostprocessorName, std::unique_ptr< PostprocessorValue > >	_default_values

const bool	_broadcast_by_default

const MooseObject &	_vpi_moose_object

const FEProblemBase &	_vpi_feproblem

const THREAD_ID	_vpi_tid

const InputParameters &	_ri_params

FEProblemBase &	_ri_fe_problem_base

const ReporterData &	_ri_reporter_data

const MooseObject &	_ri_moose_object

const InputParameters &	_dni_params

FEProblemBase &	_dni_feproblem

const MooseObject *const	_dni_moose_object_ptr

const InputParameters &	_si_params

FEProblemBase &	_si_feproblem

THREAD_ID	_si_tid

const RestartableDataMapName	_metaname

std::string	_restartable_name

MooseApp &	_meta_data_app

const MooseObject *const	_meta_data_object

const InputParameters &	_sc_parameters

const std::string &	_sc_name

const bool	_sc_is_implicit

std::unordered_map< std::string, std::vector< MooseVariableScalar * > >	_coupled_scalar_vars

std::unordered_map< std::string, std::unique_ptr< VariableValue > >	_default_value

std::unordered_map< std::string, std::unique_ptr< ADVariableValue > >	_dual_default_value

std::vector< MooseVariableScalar * >	_coupled_moose_scalar_vars

std::unordered_map< std::string, std::vector< MooseVariableFieldBase * > >	_sc_coupled_vars

std::set< TagID >	_sc_coupleable_vector_tags

std::set< TagID >	_sc_coupleable_matrix_tags

const MooseObject &	_mi_moose_object

const bool	_mi_boundary_restricted

const std::set< SubdomainID > &	_mi_block_ids

const std::set< BoundaryID > &	_mi_boundary_ids

std::vector< std::unique_ptr< OptionalMaterialPropertyProxyBase< MaterialPropertyInterface > > >	_optional_property_proxies

const std::string	_ti_name

const MooseObject &	_reporter_moose_object

const InputParameters &	_reporter_params

const std::string &	_reporter_name

FEProblemBase &	_reporter_fe_problem

ReporterData &	_reporter_data

std::vector< std::unique_ptr< UnusedWrapperBase > >	_unused_values

MooseApp &	_oi_moose_app

OutputWarehouse &	_oi_output_warehouse

std::set< OutputName >	_oi_outputs

FEProblemBase &	_likelihood_feproblem
	Reference to FEProblemBase instance.

Detailed Description

A class for performing independent Metropolis-Hastings MCMC decision making.

Definition at line 19 of file IndependentMHDecision.h.

Constructor & Destructor Documentation

◆ IndependentMHDecision()

IndependentMHDecision::IndependentMHDecision ( const InputParameters & parameters )

Definition at line 24 of file IndependentMHDecision.C.

  : PMCMCDecision(parameters),
    _igmh(dynamic_cast<const IndependentGaussianMH *>(&_sampler)),
    _seed_input(declareValue<std::vector<Real>>("seed_input")),
    _seed_outputs(declareRestartableData<std::vector<Real>>("seed_outputs"))
{
  // Check whether the selected sampler is a M-H sampler or not
  if (!_igmh)
    paramError("sampler", "The selected sampler is not of type IndependentGaussianMH.");
 
  _seed_outputs.resize(_num_confg_values);
  _tpm_modified.assign(_props + 1, 1.0 / (_props + 1));
}

Member Function Documentation

◆ computeEvidence()

void IndependentMHDecision::computeEvidence	(	std::vector< Real > &	evidence,
		const DenseMatrix< Real > &	input_matrix
	)

overrideprotectedvirtual

Compute the evidence (aka, betterness of the proposed sample vs the previous)

Parameters

evidence	The evidence vector to be filled
input_matrix	The matrix of proposed inputs that are provided

Reimplemented from PMCMCDecision.

Definition at line 39 of file IndependentMHDecision.C.

{
  std::vector<Real> out(_num_confg_values);
  for (unsigned int i = 0; i < evidence.size(); ++i)
  {
    evidence[i] = 0.0;
    for (unsigned int j = 0; j < _priors.size(); ++j)
      evidence[i] += (std::log(_priors[j]->pdf(input_matrix(i, j))) -
                      std::log(_priors[j]->pdf(_seed_input[j])));
    for (unsigned int j = 0; j < _num_confg_values; ++j)
      out[j] = (*_outputs_required)[j * _props + i];
    for (unsigned int j = 0; j < _likelihoods.size(); ++j)
      evidence[i] += (_likelihoods[j]->function(out) - _likelihoods[j]->function(_seed_outputs));
  }
}

◆ computeTransitionVector()

void IndependentMHDecision::computeTransitionVector	(	std::vector< Real > &	tv,
		const std::vector< Real > &	evidence
	)

overrideprotectedvirtual

Compute the transition probability vector (after the computation of evidence)

Parameters

tv	The transition probability vector to be filled
evidence	The vector of evidences provided

Reimplemented from PMCMCDecision.

Definition at line 57 of file IndependentMHDecision.C.

{
  for (unsigned int i = 0; i < tv.size(); ++i)
    tv[i] = (1.0 / tv.size()) * std::exp(std::min(evidence[i], 0.0));
  _tpm_modified = tv;
  _tpm_modified.push_back((1.0 - std::accumulate(tv.begin(), tv.end(), 0.0)));
  _outputs_sto = (*_outputs_required);
}

◆ execute()

void PMCMCDecision::execute ( )

overridevirtualinherited

Implements GeneralReporter.

Definition at line 161 of file PMCMCDecision.C.

{
  if (_sampler.getNumberOfLocalRows() == 0 || _check_step == _t_step)
  {
    _check_step = _t_step;
    return;
  }
 
  // Gather inputs and outputs from the sampler and subApps
  DenseMatrix<Real> data_in = _sampler.getGlobalSamples();
  if (!usingGP())
  {
    mooseAssert(_output_value->size() >= _sampler.getNumberOfLocalRows(),
                "Incorrectly sized outputs.");
    _outputs_required->assign(_output_value->begin(),
                              _output_value->begin() + _sampler.getNumberOfLocalRows());
    _communicator.allgather((*_outputs_required));
  }
 
  // Compute the evidence and transitimkon vectors
  std::vector<Real> evidence(_props);
  if (_t_step > _pmcmc->decisionStep())
  {
    computeEvidence(evidence, data_in);
    computeTransitionVector(_tpm, evidence);
  }
  else
    _tpm.assign(_props, 1.0);
 
  // Accept/reject the proposed samples and assign the correct outputs
  std::vector<Real> req_inputs(_sampler.getNumberOfCols() - _num_confg_params);
  for (unsigned int i = 0; i < _props; ++i)
  {
    nextSamples(req_inputs, data_in, _tpm, i);
    _inputs[i] = req_inputs;
  }
 
  // Compute the next seeds to facilitate proposals (not always required)
  nextSeeds();
 
  // Store data from previous step
  _data_prev = data_in;
  _var_prev = _variance;
  if (!usingGP())
    _outputs_prev = (*_outputs_required);
 
  // Track the current step
  _check_step = _t_step;
}

◆ finalize()

virtual void PMCMCDecision::finalize ( )

inlineoverridevirtualinherited

Implements GeneralReporter.

Definition at line 28 of file PMCMCDecision.h.

28{}

◆ getLikelihoodFunctionByName()

LikelihoodFunctionBase * LikelihoodInterface::getLikelihoodFunctionByName ( const UserObjectName & name ) const

protectedinherited

Lookup a LikelihoodFunction object by name and return pointer.

Definition at line 24 of file LikelihoodInterface.C.

{
  std::vector<LikelihoodFunctionBase *> models;
  _likelihood_feproblem.theWarehouse()
      .query()
      .condition<AttribName>(name)
      .condition<AttribSystem>("LikelihoodFunctionBase")
      .queryInto(models);
 
  if (models.empty())
    mooseError("Unable to find a LikelihoodFunction object with the name '" + name + "'");
  return models[0];
}

Referenced by BayesianActiveLearner::BayesianActiveLearner(), PMCMCDecision::PMCMCDecision(), and TestLikelihood::TestLikelihood().

◆ initialize()

void PMCMCDecision::initialize ( )

overridevirtualinherited

Implements GeneralReporter.

Definition at line 87 of file PMCMCDecision.C.

{
  if (!isParamValid("output_value") && !usingGP())
    paramError("output_value", "Value of the model output from the SubApp should be specified.");
}

◆ nextSamples()

void IndependentMHDecision::nextSamples	(	std::vector< Real > &	req_inputs,
		DenseMatrix< Real > &	input_matrix,
		const std::vector< Real > &	tv,
		const unsigned int &	parallel_index
	)

overrideprotectedvirtual

Resample inputs given the transition vector (after transition vector computed)

Parameters

req_inputs	The vector of accepted samples to be filled
input_matrix	The matrix of proposed inputs provided
tv	The vector of transition probabilities provided
parallel_index	The current parallel proposal index provided

Reimplemented from PMCMCDecision.

Definition at line 68 of file IndependentMHDecision.C.

{
  const bool value = (_tpm_modified[0] == 1.0 / (_props + 1));
  if (!value)
  {
    unsigned int index =
        AdaptiveMonteCarloUtils::weightedResample(_tpm_modified, _rnd_vec[parallel_index]);
    if (index < _props)
    {
      for (unsigned int k = 0; k < _sampler.getNumberOfCols() - _num_confg_params; ++k)
        req_inputs[k] = input_matrix(index, k);
      for (unsigned int k = 0; k < _num_confg_values; ++k)
        (*_outputs_required)[k * _props + parallel_index] = _outputs_sto[k * _props + index];
    }
    else
    {
      req_inputs = _seed_input;
      for (unsigned int k = 0; k < _num_confg_values; ++k)
        (*_outputs_required)[k * _props + parallel_index] = _seed_outputs[k];
    }
  }
  else
  {
    for (unsigned int k = 0; k < _sampler.getNumberOfCols() - _num_confg_params; ++k)
      req_inputs[k] = input_matrix(parallel_index, k);
    _variance[parallel_index] = _new_var_samples[parallel_index];
  }
}

◆ nextSeeds()

void IndependentMHDecision::nextSeeds ( )

overrideprotectedvirtual

Compute the next set of seeds to facilitate proposals.

Set to empty in base to permit flexibility for MCMC samplers

Reimplemented from PMCMCDecision.

Definition at line 101 of file IndependentMHDecision.C.

{
  _seed_input = _inputs[_props - 1];
  for (unsigned int k = 0; k < _num_confg_values; ++k)
    _seed_outputs[k] = (*_outputs_required)[(k + 1) * _props - 1];
}

◆ usingGP()

virtual bool PMCMCDecision::usingGP ( ) const

inlineprotectedvirtualinherited

Flag to specify if a pre-trained Gaussian process model is used.

Definition at line 66 of file PMCMCDecision.h.

66{ return false; }

Referenced by PMCMCDecision::execute(), and PMCMCDecision::initialize().

◆ validParams()

InputParameters IndependentMHDecision::validParams ( )

static

Definition at line 15 of file IndependentMHDecision.C.

{
  InputParameters params = PMCMCDecision::validParams();
  params.addClassDescription("Perform decision making for independent Metropolis-Hastings MCMC.");
  params.addParam<ReporterValueName>(
      "seed_input", "seed_input", "The seed vector input for proposing new samples.");
  return params;
}

Member Data Documentation

◆ _check_step

int& PMCMCDecision::_check_step

protectedinherited

Ensure that the MCMC algorithm proceeds in a sequential fashion.

Definition at line 126 of file PMCMCDecision.h.

Referenced by PMCMCDecision::execute().

◆ _data_prev

DenseMatrix<Real>& PMCMCDecision::_data_prev

protectedinherited

Storage for previous inputs.

Definition at line 114 of file PMCMCDecision.h.

Referenced by PMCMCDecision::computeEvidence(), PMCMCDecision::execute(), and PMCMCDecision::nextSamples().

◆ _igmh

const IndependentGaussianMH* const IndependentMHDecision::_igmh

private

IndependentGaussianMH sampler.

Definition at line 42 of file IndependentMHDecision.h.

Referenced by IndependentMHDecision().

◆ _inputs

std::vector<std::vector<Real> >& PMCMCDecision::_inputs

protectedinherited

Model input data that is uncertain.

Definition at line 69 of file PMCMCDecision.h.

Referenced by PMCMCDecision::execute(), nextSeeds(), and PMCMCDecision::PMCMCDecision().

◆ _likelihood_feproblem

FEProblemBase& LikelihoodInterface::_likelihood_feproblem

privateinherited

Reference to FEProblemBase instance.

Definition at line 29 of file LikelihoodInterface.h.

Referenced by LikelihoodInterface::getLikelihoodFunctionByName().

◆ _likelihoods

std::vector<const LikelihoodFunctionBase *> PMCMCDecision::_likelihoods

protectedinherited

Storage for the likelihood objects to be utilized.

Definition at line 81 of file PMCMCDecision.h.

Referenced by PMCMCDecision::computeEvidence(), computeEvidence(), and PMCMCDecision::PMCMCDecision().

◆ _new_var_samples

const std::vector<Real>& PMCMCDecision::_new_var_samples

protectedinherited

Storage for new proposed variance samples.

Definition at line 96 of file PMCMCDecision.h.

Referenced by PMCMCDecision::computeEvidence(), PMCMCDecision::nextSamples(), and nextSamples().

◆ _noise

Real& PMCMCDecision::_noise

protectedinherited

Model noise term to pass to Likelihoods object.

Definition at line 78 of file PMCMCDecision.h.

Referenced by PMCMCDecision::computeEvidence().

◆ _num_confg_params

dof_id_type PMCMCDecision::_num_confg_params

protectedinherited

Storage for the number of experimental configuration parameters.

Definition at line 111 of file PMCMCDecision.h.

Referenced by PMCMCDecision::execute(), PMCMCDecision::nextSamples(), nextSamples(), and PMCMCDecision::PMCMCDecision().

◆ _num_confg_values

dof_id_type PMCMCDecision::_num_confg_values

protectedinherited

Storage for the number of experimental configuration values.

Definition at line 108 of file PMCMCDecision.h.

Referenced by PMCMCDecision::computeEvidence(), computeEvidence(), IndependentMHDecision(), PMCMCDecision::nextSamples(), nextSamples(), nextSeeds(), and PMCMCDecision::PMCMCDecision().

◆ _output_value

const std::vector<Real>* PMCMCDecision::_output_value

protectedinherited

Current output values.

Definition at line 123 of file PMCMCDecision.h.

Referenced by PMCMCDecision::execute().

◆ _outputs_prev

std::vector<Real>& PMCMCDecision::_outputs_prev

protectedinherited

Storage for previous outputs.

Definition at line 120 of file PMCMCDecision.h.

Referenced by PMCMCDecision::computeEvidence(), PMCMCDecision::execute(), and PMCMCDecision::nextSamples().

◆ _outputs_required

std::vector<Real>* PMCMCDecision::_outputs_required

protectedinherited

Transfer the right outputs to the file.

Definition at line 105 of file PMCMCDecision.h.

Referenced by computeEvidence(), PMCMCDecision::execute(), PMCMCDecision::nextSamples(), nextSamples(), nextSeeds(), and PMCMCDecision::PMCMCDecision().

◆ _outputs_sto

std::vector<Real> IndependentMHDecision::_outputs_sto

private

Store the gathered outputs.

Definition at line 54 of file IndependentMHDecision.h.

Referenced by computeTransitionVector(), and nextSamples().

◆ _pmcmc

const PMCMCBase* const PMCMCDecision::_pmcmc

protectedinherited

MCMC sampler base.

Definition at line 87 of file PMCMCDecision.h.

Referenced by PMCMCDecision::execute(), and PMCMCDecision::PMCMCDecision().

◆ _priors

const std::vector<const Distribution *> PMCMCDecision::_priors

protectedinherited

Storage for the priors.

Definition at line 99 of file PMCMCDecision.h.

Referenced by PMCMCDecision::computeEvidence(), computeEvidence(), and AffineInvariantStretchDecision::computeTransitionVector().

◆ _props

dof_id_type PMCMCDecision::_props

protectedinherited

Storage for the number of parallel proposals.

Definition at line 90 of file PMCMCDecision.h.

Referenced by PMCMCDecision::computeEvidence(), computeEvidence(), PMCMCDecision::computeTransitionVector(), PMCMCDecision::execute(), IndependentMHDecision(), PMCMCDecision::nextSamples(), nextSamples(), nextSeeds(), and PMCMCDecision::PMCMCDecision().

◆ _rnd_vec

const std::vector<Real>& PMCMCDecision::_rnd_vec

protectedinherited

Storage for the random numbers for decision making.

Definition at line 93 of file PMCMCDecision.h.

Referenced by PMCMCDecision::nextSamples(), and nextSamples().

◆ _sampler

Sampler& PMCMCDecision::_sampler

protectedinherited

The MCMC sampler.

Definition at line 84 of file PMCMCDecision.h.

Referenced by PMCMCDecision::execute(), PMCMCDecision::nextSamples(), nextSamples(), and PMCMCDecision::PMCMCDecision().

◆ _seed_input

std::vector<Real>& IndependentMHDecision::_seed_input

private

Seed vector input for proposing new samples.

Definition at line 45 of file IndependentMHDecision.h.

Referenced by computeEvidence(), nextSamples(), and nextSeeds().

◆ _seed_outputs

std::vector<Real>& IndependentMHDecision::_seed_outputs

private

Outputs corresponding to the seed input vector.

Definition at line 48 of file IndependentMHDecision.h.

Referenced by computeEvidence(), IndependentMHDecision(), nextSamples(), and nextSeeds().

◆ _tpm

std::vector<Real>& PMCMCDecision::_tpm

protectedinherited

Transition probability matrix.

Definition at line 72 of file PMCMCDecision.h.

Referenced by PMCMCDecision::execute(), and PMCMCDecision::PMCMCDecision().

◆ _tpm_modified

std::vector<Real> IndependentMHDecision::_tpm_modified

private

Modified transition vector considering the seed input.

Definition at line 51 of file IndependentMHDecision.h.

Referenced by computeTransitionVector(), IndependentMHDecision(), and nextSamples().

◆ _var_prev

std::vector<Real>& PMCMCDecision::_var_prev

protectedinherited

Storage for previous variances.

Definition at line 117 of file PMCMCDecision.h.

Referenced by PMCMCDecision::computeEvidence(), PMCMCDecision::execute(), and PMCMCDecision::nextSamples().

◆ _var_prior

const Distribution* PMCMCDecision::_var_prior

protectedinherited

Storage for the prior over the variance.

Definition at line 102 of file PMCMCDecision.h.

Referenced by PMCMCDecision::computeEvidence(), and PMCMCDecision::nextSamples().

◆ _variance

std::vector<Real>& PMCMCDecision::_variance

protectedinherited

Model variance term.

Definition at line 75 of file PMCMCDecision.h.

Referenced by PMCMCDecision::execute(), PMCMCDecision::nextSamples(), nextSamples(), and PMCMCDecision::PMCMCDecision().

The documentation for this class was generated from the following files:

stochastic_tools/include/reporters/IndependentMHDecision.h
stochastic_tools/src/reporters/IndependentMHDecision.C

Public Types

Public Member Functions

Static Public Member Functions

Public Attributes

Static Public Attributes

Protected Member Functions

Static Protected Member Functions

Protected Attributes

Static Protected Attributes

Private Member Functions

Static Private Member Functions

Private Attributes

Detailed Description

Constructor & Destructor Documentation

◆ IndependentMHDecision()

Member Function Documentation

◆ computeEvidence()

◆ computeTransitionVector()

◆ execute()

◆ finalize()

◆ getLikelihoodFunctionByName()

◆ initialize()

◆ nextSamples()

◆ nextSeeds()

◆ usingGP()

◆ validParams()

Member Data Documentation

◆ _check_step

◆ _data_prev

◆ _igmh

◆ _inputs

◆ _likelihood_feproblem

◆ _likelihoods

◆ _new_var_samples

◆ _noise

◆ _num_confg_params

◆ _num_confg_values

◆ _output_value

◆ _outputs_prev

◆ _outputs_required

◆ _outputs_sto

◆ _pmcmc

◆ _priors

◆ _props

◆ _rnd_vec

◆ _sampler

◆ _seed_input

◆ _seed_outputs

◆ _tpm

◆ _tpm_modified

◆ _var_prev

◆ _var_prior

◆ _variance