MultiAppGeneralFieldFunctorTransfer.C

Go to the documentation of this file.

//* This file is part of the MOOSE framework
//* https://mooseframework.inl.gov
//*
//* All rights reserved, see COPYRIGHT for full restrictions
//* https://github.com/idaholab/moose/blob/master/COPYRIGHT
//*
//* Licensed under LGPL 2.1, please see LICENSE for details
//* https://www.gnu.org/licenses/lgpl-2.1.html
 
#include "MultiAppGeneralFieldFunctorTransfer.h"
 
// MOOSE includes
#include "FEProblem.h"
#include "MooseMesh.h"
#include "MooseTypes.h"
#include "MooseVariableFE.h"
#include "SystemBase.h"
#include "Positions.h"
#include "MooseAppCoordTransform.h"
#include "MooseFunctorArguments.h"
 
registerMooseObject("MooseApp", MultiAppGeneralFieldFunctorTransfer);
 
InputParameters
MultiAppGeneralFieldFunctorTransfer::validParams()
{
  InputParameters params = MultiAppGeneralFieldKDTreeTransferBase::validParams();
  params += NonADFunctorInterface::validParams();
  params.addClassDescription(
      "Transfers functor data at the MultiApp position by evaluating the functor inside its domain "
      "of definition and extrapolating with a user-selected behavior outside");
 
  // Input variables as functors instead
  params.suppressParameter<std::vector<VariableName>>("source_variable");
  // NOTE: could rename this instead once we support array or vector functor component transfer
  params.suppressParameter<std::vector<unsigned int>>("source_variable_components");
 
  params.addRequiredParam<std::vector<MooseFunctorName>>(
      "source_functors", "Functors providing the values to transfer to the target variables");
 
  // Potential additional parameters:
  // - functor evaluation spatial argument type
  // - functor evaluation time argument type
  // - number of points to use when creating extrapolation 'patches'
  // - other 'nearest' locations: node, element, side or a general 'location'
  // - options for a radius based search and build patches instead of 'nearest'
 
  MooseEnum extrapolation("flat evaluate_oob nearest-node nearest-elem", "nearest-node");
  params.addParam<MooseEnum>("extrapolation_behavior",
                             extrapolation,
                             "How to extrapolate the functors when a target point for the transfer "
                             "is outside the domain of evaluation");
 
  // This is a convenient heuristic to limit communication
  params.renameParam("use_nearest_app", "assume_nearest_app_holds_evaluation_location", "");
 
  return params;
}
 
MultiAppGeneralFieldFunctorTransfer::MultiAppGeneralFieldFunctorTransfer(
    const InputParameters & parameters)
  : MultiAppGeneralFieldKDTreeTransferBase(parameters),
    NonADFunctorInterface(this),
    _functor_names(getParam<std::vector<MooseFunctorName>>("source_functors")),
    _extrapolation_behavior(getParam<MooseEnum>("extrapolation_behavior"))
{
  // Check extrapolation options
  if (isParamSetByUser("extrapolation_constant") && _extrapolation_behavior != "flat")
    paramError("extrapolation_behavior",
               "Flat (single-constant) extrapolation must be selected if an extrapolation constant "
               "is specified");
  if (_post_transfer_extrapolation != "none" && _extrapolation_behavior != "flat")
    paramError("extrapolation_behavior",
               "Flat (single-constant) extrapolation must be selected if an extrapolation post-"
               "treatment is specified");
 
  // Check size
  if (_functor_names.size() != _to_var_names.size())
    paramError("source_functors", "Should be the same size as target 'variable'");
}
 
void
MultiAppGeneralFieldFunctorTransfer::initialSetup()
{
  MultiAppGeneralFieldKDTreeTransferBase::initialSetup();
 
  // Retrieve the functors
  _functors.resize(_from_problems.size());
  _functor_is_variable.resize(_functor_names.size());
  for (const auto i_functor : index_range(_functor_names))
  {
    const auto & fname = _functor_names[i_functor];
 
    // Different functors for every source
    for (const auto i_from : index_range(_from_problems))
      _functors[i_from].push_back(
          &_from_problems[i_from]->getFunctor<Real>(fname, /*thread*/ 0, name(), false));
 
    // Need to keep track of variables because of ghosting needs
    // NOTE: we don't really expect the functor type to vary between problems
    for (const auto i_from : index_range(_from_problems))
      _functor_is_variable[i_functor] =
          _functor_is_variable[i_functor] || _from_problems[i_from]->hasVariable(fname);
  }
}
 
void
MultiAppGeneralFieldFunctorTransfer::execute()
{
  // Execute the user object if it was specified to execute on TRANSFER
  for (const auto & fname : _functor_names)
    switch (_current_direction)
    {
      case TO_MULTIAPP:
      {
        if (!_fe_problem.hasUserObject(fname))
          continue;
        checkParentAppUserObjectExecuteOn(fname);
        _fe_problem.computeUserObjectByName(EXEC_TRANSFER, Moose::PRE_AUX, fname);
        _fe_problem.computeUserObjectByName(EXEC_TRANSFER, Moose::POST_AUX, fname);
        break;
      }
      case FROM_MULTIAPP:
        errorIfObjectExecutesOnTransferInSourceApp(fname);
    }
 
  // Perfom the actual transfer
  MultiAppGeneralFieldKDTreeTransferBase::execute();
}
 
void
MultiAppGeneralFieldFunctorTransfer::prepareEvaluationOfInterpValues(const unsigned int var_index)
{
  MultiAppGeneralFieldKDTreeTransferBase::prepareEvaluationOfInterpValues(var_index);
 
  // Get the point locators
  _point_locators.resize(_from_problems.size());
  for (const auto app_index : index_range(_from_problems))
    _point_locators[app_index] =
        _from_problems[app_index]->mesh(_displaced_source_mesh).getPointLocator();
}
 
void
MultiAppGeneralFieldFunctorTransfer::buildKDTrees(const unsigned int var_index)
{
  computeNumSources();
  const auto num_apps_per_tree = getNumAppsPerTree();
  _local_kdtrees.resize(_num_sources);
  _local_points.resize(_num_sources);
  _local_values.resize(_num_sources);
  unsigned int max_leaf_size = 0;
 
  // Construct a local KDTree for each source. A source can be a single app or multiple apps
  // combined (option for nearest-position / mesh-divisions)
  for (const auto i_source : make_range(_num_sources))
  {
    // Nest a loop on apps in case multiple apps contribute to the same KD-Tree source
    for (const auto app_i : make_range(num_apps_per_tree))
    {
      // Get the current app index
      const auto i_from = getAppIndex(i_source, app_i);
      // Current position index, if using nearest positions (not used for use_nearest_app)
      const auto i_pos = _group_subapps ? i_source : (i_source % getNumDivisions());
 
      // Get access to the variable and some variable information
      FEProblemBase & from_problem = *_from_problems[i_from];
      auto & from_mesh = from_problem.mesh(_displaced_source_mesh);
      // No need for displaced mesh for checking domain of definition
      const auto & node_to_elem_map = from_problem.mesh().nodeToElemMap();
 
      // Get functor for that app
      const auto & functor = _functors[i_from][var_index];
 
      // Form the block restriction for evaluation. We need to prevent evaluation outside the
      // domain of evaluation of the functor (could crash) or the transfer (disobeys user)
      // Note: the functor subdomains of evaluation are checked below as well, so we
      // should be fairly safe
      std::set<SubdomainID> from_blocks;
      if (_from_blocks.size())
      {
        for (const auto bl : _from_blocks)
          if (functor->hasBlocks(bl))
            from_blocks.insert(bl);
      }
      else
        from_blocks = Moose::NodeArg::undefined_subdomain_connection;
 
      // We need to loop over the nodes at the edge of the domain of definition of the
      // current functor
      if (_extrapolation_behavior == 2) // nearest-node
        for (const auto & node : from_mesh.getMesh().local_node_ptr_range())
        {
          // No way to check number of dofs for a functor
          // Functor should be defined on at least one block by the block to have a value
          // Node should be either on a functor or a mesh boundary to be relevant for extrapolation
          bool on_at_least_one_block = false;
          bool on_boundary = false;
          for (const auto eid : libmesh_map_find(node_to_elem_map, node->id()))
          {
            bool has_block = functor->hasBlocks(from_mesh.elemPtr(eid)->subdomain_id());
            if (has_block)
              on_at_least_one_block = true;
            else
              on_boundary = true;
            // Detect a mesh boundary
            const auto elem = from_mesh.elemPtr(eid);
            for (const auto side : elem->side_index_range())
              if (!elem->neighbor_ptr(side) &&
                  elem->is_node_on_side(elem->get_node_index(node), side))
                on_boundary = true;
          }
 
          // Not on a boundary
          if (!on_at_least_one_block || !on_boundary)
            continue;
 
          if (!_from_blocks.empty() && !inBlocks(_from_blocks, from_mesh, node))
            continue;
 
          if (!_from_boundaries.empty() && !onBoundaries(_from_boundaries, from_mesh, node))
            continue;
 
          // Handle the various source mesh divisions behaviors
          // NOTE: This could be more efficient, as instead of rejecting points in the
          // wrong division, we could just be adding them to the tree for the right division
          if (!_from_mesh_divisions.empty())
          {
            const auto tree_division_index = i_source % getNumDivisions();
            const auto node_div_index = _from_mesh_divisions[i_from]->divisionIndex(*node);
 
            // Spatial restriction is always active
            if (node_div_index == MooseMeshDivision::INVALID_DIVISION_INDEX)
              continue;
            // We fill one tree per division index for matching subapp index or division index. We
            // only accept source data from the division index
            else if ((_from_mesh_division_behavior ==
                          MeshDivisionTransferUse::MATCH_DIVISION_INDEX ||
                      _to_mesh_division_behavior == MeshDivisionTransferUse::MATCH_DIVISION_INDEX ||
                      _from_mesh_division_behavior ==
                          MeshDivisionTransferUse::MATCH_SUBAPP_INDEX) &&
                     tree_division_index != node_div_index)
              continue;
          }
 
          // Transformed node is in the reference space, as is the _nearest_positions_obj
          const auto transformed_node = (*_from_transforms[getGlobalSourceAppIndex(i_from)])(*node);
 
          // Only add to the KDTree nodes that are closest to the 'position'
          // When querying values at a target point, the KDTree associated to the closest
          // position to the target point is queried
          // We do not need to check the positions when using nearest app as we will assume
          // (somewhat incorrectly) that all the points in each subapp are closer to that subapp
          // than to any other
          if (!_use_nearest_app && _nearest_positions_obj &&
              !closestToPosition(i_pos, transformed_node))
            continue;
 
          _local_points[i_source].push_back(transformed_node);
 
          // Evaluate the functor on the boundary node
          Moose::NodeArg node_arg = {node, &from_blocks};
          Moose::StateArg time_arg(0, Moose::SolutionIterationType::Time);
          _local_values[i_source].push_back((*functor)(node_arg, time_arg));
        }
      // Nearest-element option
      // We also use this for 'evaluate_oob', which will influence the distance found and used to
      // select the nearest value from out of bounds evaluations. It will not influence the result
      // of the evaluation
      else
        for (const auto & elem : from_mesh.getMesh().local_element_ptr_range())
        {
          // No way to check number of dofs for a functor
          if (!functor->hasBlocks(elem->subdomain_id()))
            continue;
 
          // Make sure sure it is at a boundary, for either the mesh or a functor
          bool at_a_boundary = false;
          for (const auto side : elem->side_index_range())
          {
            // Boundary of the mesh
            if (!elem->neighbor_ptr(side))
            {
              at_a_boundary = true;
              break;
            }
            // Boundary of the domain of definition of the functor
            else if (!functor->hasBlocks(elem->neighbor_ptr(side)->subdomain_id()))
            {
              at_a_boundary = true;
              break;
            }
          }
          // Non boundary elements are not relevant as we can just evaluate the functor
          if (!at_a_boundary)
            continue;
 
          if (!_from_blocks.empty() && !inBlocks(_from_blocks, from_mesh, elem))
            continue;
 
          if (!_from_boundaries.empty() && !onBoundaries(_from_boundaries, from_mesh, elem))
            continue;
 
          // Handle the various source mesh divisions behaviors
          // NOTE: This could be more efficient, as instead of rejecting points in the
          // wrong division, we could just be adding them to the tree for the right division
          if (!_from_mesh_divisions.empty())
          {
            const auto tree_division_index = i_source % getNumDivisions();
            const auto node_div_index =
                _from_mesh_divisions[i_from]->divisionIndex(elem->vertex_average());
 
            // Spatial restriction is always active
            if (node_div_index == MooseMeshDivision::INVALID_DIVISION_INDEX)
              continue;
            // We fill one tree per division index for matching subapp index or division index. We
            // only accept source data from the division index
            else if ((_from_mesh_division_behavior ==
                          MeshDivisionTransferUse::MATCH_DIVISION_INDEX ||
                      _to_mesh_division_behavior == MeshDivisionTransferUse::MATCH_DIVISION_INDEX ||
                      _from_mesh_division_behavior ==
                          MeshDivisionTransferUse::MATCH_SUBAPP_INDEX) &&
                     tree_division_index != node_div_index)
              continue;
          }
 
          // Transformed centroid is in the reference space, as is the _nearest_positions_obj
          const auto transformed_centroid =
              (*_from_transforms[getGlobalSourceAppIndex(i_from)])(elem->vertex_average());
 
          // Only add to the KDTree nodes that are closest to the 'position'
          // When querying values at a target point, the KDTree associated to the closest
          // position to the target point is queried
          // We do not need to check the positions when using nearest app as we will assume
          // (somewhat incorrectly) that all the points in each subapp are closer to that subapp
          // than to any other
          if (!_use_nearest_app && _nearest_positions_obj &&
              !closestToPosition(i_pos, transformed_centroid))
            continue;
 
          _local_points[i_source].push_back(transformed_centroid);
 
          // Evaluate the functor on the boundary node
          Moose::ElemArg elem_arg = {elem, /*sknewness*/ false};
          Moose::StateArg time_arg(0, Moose::SolutionIterationType::Time);
          _local_values[i_source].push_back((*functor)(elem_arg, time_arg));
        }
 
      max_leaf_size = std::max(max_leaf_size, from_mesh.getMaxLeafSize());
    }
 
    // Make a KDTree from the accumulated points data
    std::shared_ptr<KDTree> _kd_tree =
        std::make_shared<KDTree>(_local_points[i_source], max_leaf_size);
    _local_kdtrees[i_source] = _kd_tree;
  }
}
 
void
MultiAppGeneralFieldFunctorTransfer::evaluateInterpValues(
    const unsigned int var_index,
    const std::vector<std::pair<Point, unsigned int>> & incoming_points,
    std::vector<std::pair<Real, Real>> & outgoing_vals)
{
  evaluateValues(var_index, incoming_points, outgoing_vals);
}
 
void
MultiAppGeneralFieldFunctorTransfer::evaluateValues(
    const unsigned int var_index,
    const std::vector<std::pair<Point, unsigned int>> & incoming_points,
    std::vector<std::pair<Real, Real>> & outgoing_vals)
{
  dof_id_type i_pt = 0;
  std::set<const Elem *> elem_candidates;
  const auto num_apps_per_tree = getNumAppsPerTree();
 
  for (const auto & [pt, mesh_div] : incoming_points)
  {
    // Reset distance
    outgoing_vals[i_pt].second = std::numeric_limits<Real>::max();
    bool point_found = false;
 
    // Loop on all sources: locate the point and evaluate the functor if it is in-domain.
    // Extrapolation (all modes) is handled after this loop, only when no in-domain hit is found.
    for (const auto i_source : make_range(_num_sources))
    {
      // Examine all restrictions for the point. This source (KDTree+values) could be ruled out
      if (!checkRestrictionsForSource(pt, mesh_div, i_source))
        continue;
      // Note: because this transfer is intended for extrapolation,
      // this will usually not restrict the source. The distance comparisons will be crucial
 
      // Inner loop: when group_subapps is true, multiple apps contribute to the same source
      // (one KD-tree per position). Mirror the structure of buildKDTrees.
      for (const auto app_i : make_range(num_apps_per_tree))
      {
        const auto app_index = getAppIndex(i_source, app_i);
 
        // Point locators and functor evaluation work in each app's local frame
        const Point app_local_pt =
            getPointInSourceAppFrame(pt, app_index, "Functor value evaluation");
 
        // Retrieve the functor
        const auto & functor = *_functors[app_index][var_index];
 
        // Get the intersection of the functor and transfer source block restrictions
        std::set<SubdomainID> from_blocks;
        for (const auto bl :
             _from_blocks.size()
                 ? _from_blocks
                 : _from_problems[app_index]->mesh().getMesh().get_mesh_subdomains())
          if (functor.hasBlocks(bl))
            from_blocks.insert(bl);
 
        // If in domain, use the functor evaluation at the point
        // Locate the point and an element
        // Clear the nearest candidates
        elem_candidates.clear();
        if (from_blocks.size())
          (*_point_locators[app_index])(app_local_pt, elem_candidates, &from_blocks);
        else
          (*_point_locators[app_index])(app_local_pt, elem_candidates);
        if (elem_candidates.size())
        {
          // Register conflict if any
          if (point_found && _search_value_conflicts)
          {
            // In the nearest-position/app mode, we save conflicts in the reference frame
            if (_nearest_positions_obj)
              registerConflict(i_source, /*dof*/ 0, pt, 0, true);
            else
              registerConflict(i_source, 0, app_local_pt, 0, true);
          }
 
          // Average the result for now
          // TODO: if we knew the functor were continuous, we could return earlier
          Real value = 0;
          unsigned int num_values = 0;
          for (const auto elem : elem_candidates)
          {
            // Variables would hit a ghosting error; compare against the sub-app communicator rank,
            // not the parent communicator rank - each sub-app runs in its own sub-communicator
            // where ranks start at 0, regardless of the global rank of the owning process
            if (_functor_is_variable[var_index] &&
                elem->processor_id() != _from_problems[app_index]->processor_id())
              continue;
            // Avoid evaluating outside of element
            if (!elem->contains_point(app_local_pt, libMesh::TOLERANCE * libMesh::TOLERANCE))
              continue;
            Moose::ElemPointArg elem_pt_arg = {elem, app_local_pt, /*correct skewness*/ false};
            Moose::StateArg time_arg(0, Moose::SolutionIterationType::Time);
            value += functor(elem_pt_arg, time_arg);
            num_values++;
          }
          if (num_values == 0)
            continue;
 
          value /= num_values;
          point_found = true;
          outgoing_vals[i_pt] = {value, 0};
        }
      }
    }
 
    // Extrapolation: only reached when no in-domain functor evaluation was found.
    //   flat:          return OutOfMeshValue; the base class post-transfer step handles
    //                  any user-specified constant or nearest-node fill on the target mesh
    //   evaluate_oob:  find the nearest boundary point via KD-tree, then evaluate the functor
    //                  there (out-of-bounds evaluation with a nullptr element)
    //   nearest-node / nearest-elem: delegate to the shared KD-tree method on the base class,
    //                  which also handles search_value_conflicts detection
    if (!point_found)
    {
      if (_extrapolation_behavior == 0) /*flat*/
        // The base class will take care of replacing the value
        outgoing_vals[i_pt] = {GeneralFieldTransfer::OutOfMeshValue,
                               GeneralFieldTransfer::OutOfMeshValue};
 
      else if (_extrapolation_behavior == 1) /*evaluate_oob*/
        for (const auto i_source : make_range(_num_sources))
        {
          if (!checkRestrictionsForSource(pt, mesh_div, i_source))
            continue;
 
          // TODO: Pre-allocate these two work arrays. They will be regularly resized by the
          // searches
          std::vector<std::size_t> return_index(_num_nearest_points);
          std::vector<Real> return_dist_sqr(_num_nearest_points);
 
          // KD-tree neighbor search uses global pt (KD-trees store global coords);
          // functor evaluation needs the per-app local coordinate
          const auto first_app = getAppIndex(i_source, 0);
          const Point oob_local_pt =
              getPointInSourceAppFrame(pt, first_app, "Out-of-bounds functor extrapolation");
          const auto & functor = *_functors[first_app][var_index];
 
          if (_local_kdtrees[i_source]->numberCandidatePoints())
          {
            point_found = true;
            _local_kdtrees[i_source]->neighborSearch(
                pt, _num_nearest_points, return_index, return_dist_sqr);
            Real dist_sum = 0;
            for (const auto index : return_index)
              dist_sum += (_local_points[i_source][index] - pt).norm();
 
            const auto new_distance = dist_sum / return_dist_sqr.size();
            if (new_distance < outgoing_vals[i_pt].second)
            {
              Moose::ElemPointArg elem_pt_arg = {nullptr, oob_local_pt, /*correct skewness*/ false};
              Moose::StateArg time_arg(0, Moose::SolutionIterationType::Time);
              outgoing_vals[i_pt] = {functor(elem_pt_arg, time_arg), new_distance};
            }
          }
        }
      else if (_extrapolation_behavior == 2 /*nearest-node*/ ||
               _extrapolation_behavior == 3 /*nearest-elem*/)
        evaluateNearestNodeFromKDTrees(pt, mesh_div, outgoing_vals[i_pt], point_found);
      else
        mooseAssert(false,
                    "Unexpected extrapolation behavior '" << std::to_string(_extrapolation_behavior)
                                                          << "'");
    }
 
    // Move to next point
    i_pt++;
  }
}