#include <RayTracingNemesis.h>

Inheritance diagram for RayTracingNemesis:

Public Types
typedef DataFileName	DataFileParameterType

Public Member Functions
	RayTracingNemesis (const InputParameters &parameters)

virtual void	outputMesh () override
	Output the mesh - to be overridden. More...

virtual std::string	filename () override

void	output () override

void	setFileBase (const std::string &file_base)

void	setFileNumber (unsigned int num)

unsigned int	getFileNumber ()

virtual Real	time () override

virtual Real	timeOld ()

virtual Real	dt ()

virtual Real	dtOld ()

virtual int	timeStep ()

const unsigned int &	interval () const

const MultiMooseEnum &	executeOn () const

bool	isAdvanced ()

virtual const OutputOnWarehouse &	advancedExecuteOn () const

void	allowOutput (bool state)

virtual void	outputStep (const ExecFlagType &type)

const std::set< Real > &	getSyncTimes ()

virtual bool	supportsMaterialPropertyOutput () const

virtual bool	enabled () const

std::shared_ptr< MooseObject >	getSharedPtr ()

std::shared_ptr< const MooseObject >	getSharedPtr () const

bool	isKokkosObject (IsKokkosObjectKey &&) const

MooseApp &	getMooseApp () const

const std::string &	type () const

const std::string &	name () const

std::string	typeAndName () const

MooseObjectParameterName	uniqueParameterName (const std::string &parameter_name) const

MooseObjectName	uniqueName () const

const InputParameters &	parameters () const

const hit::Node *	getHitNode () const

bool	hasBase () const

const std::string &	getBase () const

const T &	getParam (const std::string &name) const

std::vector< std::pair< T1, T2 > >	getParam (const std::string &param1, const std::string &param2) const

const T *	queryParam (const std::string &name) const

const T &	getRenamedParam (const std::string &old_name, const std::string &new_name) const

T	getCheckedPointerParam (const std::string &name, const std::string &error_string="") const

bool	isParamValid (const std::string &name) const

bool	isParamSetByUser (const std::string &name) const

void	connectControllableParams (const std::string &parameter, const std::string &object_type, const std::string &object_name, const std::string &object_parameter) const

void	paramError (const std::string &param, Args... args) const

void	paramWarning (const std::string &param, Args... args) const

void	paramWarning (const std::string &param, Args... args) const

void	paramInfo (const std::string &param, Args... args) const

std::string	messagePrefix (const bool hit_prefix=true) const

std::string	errorPrefix (const std::string &) const

void	mooseError (Args &&... args) const

void	mooseDocumentedError (const std::string &repo_name, const unsigned int issue_num, Args &&... args) const

void	mooseErrorNonPrefixed (Args &&... args) const

void	mooseWarning (Args &&... args) const

void	mooseWarning (Args &&... args) const

void	mooseWarningNonPrefixed (Args &&... args) const

void	mooseWarningNonPrefixed (Args &&... args) const

void	mooseDeprecated (Args &&... args) const

void	mooseDeprecated (Args &&... args) const

void	mooseInfo (Args &&... args) const

void	callMooseError (std::string msg, const bool with_prefix, const hit::Node *node=nullptr) const

std::string	getDataFileName (const std::string &param) const

std::string	getDataFileNameByName (const std::string &relative_path) const

std::string	getDataFilePath (const std::string &relative_path) const

virtual void	meshChanged ()

virtual void	initialSetup ()

virtual void	timestepSetup ()

virtual void	jacobianSetup ()

virtual void	residualSetup ()

virtual void	subdomainSetup ()

virtual void	customSetup (const ExecFlagType &)

const ExecFlagEnum &	getExecuteOnEnum () const

const Function &	getFunction (const std::string &name) const

const Function &	getFunctionByName (const FunctionName &name) const

bool	hasFunction (const std::string &param_name) const

bool	hasFunctionByName (const FunctionName &name) const

bool	isDefaultPostprocessorValue (const std::string &param_name, const unsigned int index=0) const

bool	hasPostprocessor (const std::string &param_name, const unsigned int index=0) const

bool	hasPostprocessorByName (const PostprocessorName &name) const

std::size_t	coupledPostprocessors (const std::string &param_name) const

const PostprocessorName &	getPostprocessorName (const std::string &param_name, const unsigned int index=0) const

const VectorPostprocessorValue &	getVectorPostprocessorValue (const std::string &param_name, const std::string &vector_name) const

const VectorPostprocessorValue &	getVectorPostprocessorValue (const std::string &param_name, const std::string &vector_name, bool needs_broadcast) const

const VectorPostprocessorValue &	getVectorPostprocessorValueByName (const VectorPostprocessorName &name, const std::string &vector_name) const

const VectorPostprocessorValue &	getVectorPostprocessorValueByName (const VectorPostprocessorName &name, const std::string &vector_name, bool needs_broadcast) const

const VectorPostprocessorValue &	getVectorPostprocessorValueOld (const std::string &param_name, const std::string &vector_name) const

const VectorPostprocessorValue &	getVectorPostprocessorValueOld (const std::string &param_name, const std::string &vector_name, bool needs_broadcast) const

const VectorPostprocessorValue &	getVectorPostprocessorValueOldByName (const VectorPostprocessorName &name, const std::string &vector_name) const

const VectorPostprocessorValue &	getVectorPostprocessorValueOldByName (const VectorPostprocessorName &name, const std::string &vector_name, bool needs_broadcast) const

const ScatterVectorPostprocessorValue &	getScatterVectorPostprocessorValue (const std::string &param_name, const std::string &vector_name) const

const ScatterVectorPostprocessorValue &	getScatterVectorPostprocessorValueByName (const VectorPostprocessorName &name, const std::string &vector_name) const

const ScatterVectorPostprocessorValue &	getScatterVectorPostprocessorValueOld (const std::string &param_name, const std::string &vector_name) const

const ScatterVectorPostprocessorValue &	getScatterVectorPostprocessorValueOldByName (const VectorPostprocessorName &name, const std::string &vector_name) const

bool	hasVectorPostprocessor (const std::string &param_name, const std::string &vector_name) const

bool	hasVectorPostprocessor (const std::string &param_name) const

bool	hasVectorPostprocessorByName (const VectorPostprocessorName &name, const std::string &vector_name) const

bool	hasVectorPostprocessorByName (const VectorPostprocessorName &name) const

const VectorPostprocessorName &	getVectorPostprocessorName (const std::string &param_name) const

PerfGraph &	perfGraph ()

const PostprocessorValue &	getPostprocessorValue (const std::string &param_name, const unsigned int index=0) const

const PostprocessorValue &	getPostprocessorValue (const std::string &param_name, const unsigned int index=0) const

const PostprocessorValue &	getPostprocessorValueOld (const std::string &param_name, const unsigned int index=0) const

const PostprocessorValue &	getPostprocessorValueOld (const std::string &param_name, const unsigned int index=0) const

const PostprocessorValue &	getPostprocessorValueOlder (const std::string &param_name, const unsigned int index=0) const

const PostprocessorValue &	getPostprocessorValueOlder (const std::string &param_name, const unsigned int index=0) const

virtual const PostprocessorValue &	getPostprocessorValueByName (const PostprocessorName &name) const

virtual const PostprocessorValue &	getPostprocessorValueByName (const PostprocessorName &name) const

const PostprocessorValue &	getPostprocessorValueOldByName (const PostprocessorName &name) const

const PostprocessorValue &	getPostprocessorValueOldByName (const PostprocessorName &name) const

const PostprocessorValue &	getPostprocessorValueOlderByName (const PostprocessorName &name) const

const PostprocessorValue &	getPostprocessorValueOlderByName (const PostprocessorName &name) const

bool	isVectorPostprocessorDistributed (const std::string &param_name) const

bool	isVectorPostprocessorDistributed (const std::string &param_name) const

bool	isVectorPostprocessorDistributedByName (const VectorPostprocessorName &name) const

bool	isVectorPostprocessorDistributedByName (const VectorPostprocessorName &name) const

const Parallel::Communicator &	comm () const

processor_id_type	n_processors () const

processor_id_type	processor_id () const

UserObjectName	getUserObjectName (const std::string &param_name) const

const T &	getUserObject (const std::string &param_name, bool is_dependency=true) const

const T &	getUserObjectByName (const UserObjectName &object_name, bool is_dependency=true) const

const UserObject &	getUserObjectBase (const std::string &param_name, bool is_dependency=true) const

const UserObject &	getUserObjectBaseByName (const UserObjectName &object_name, bool is_dependency=true) const

bool	hasUserObject (const std::string &param_name) const

bool	hasUserObject (const std::string &param_name) const

bool	hasUserObject (const std::string &param_name) const

bool	hasUserObject (const std::string &param_name) const

bool	hasUserObjectByName (const UserObjectName &object_name) const

bool	hasUserObjectByName (const UserObjectName &object_name) const

bool	hasUserObjectByName (const UserObjectName &object_name) const

bool	hasUserObjectByName (const UserObjectName &object_name) const

Static Public Member Functions
static InputParameters	validParams ()

static void	callMooseError (MooseApp const app, const InputParameters &params, std::string msg, const bool with_prefix, const hit::Node node)

static ExecFlagEnum	getDefaultExecFlagEnum ()

static void	addDeprecatedInputParameters (InputParameters &params)

Public Attributes
	usingCombinedWarningSolutionWarnings

const ConsoleStream	_console

Static Public Attributes
static const std::string	type_param

static const std::string	name_param

static const std::string	unique_name_param

static const std::string	app_param

static const std::string	moose_base_param

static const std::string	kokkos_object_param

Protected Member Functions
virtual bool	shouldOutput () override

bool	checkFilename ()

virtual void	setFileBaseInternal (const std::string &file_base)

bool	inNonlinearTimeWindow ()

bool	inLinearTimeWindow ()

virtual Real	getOutputTime ()

virtual bool	onInterval ()

void	setWallTimeIntervalFromCommandLineParam ()

void	flagInvalidSolutionInternal (const InvalidSolutionID invalid_solution_id) const

InvalidSolutionID	registerInvalidSolutionInternal (const std::string &message, const bool warning) const

T &	declareRestartableData (const std::string &data_name, Args &&... args)

ManagedValue< T >	declareManagedRestartableDataWithContext (const std::string &data_name, void *context, Args &&... args)

const T &	getRestartableData (const std::string &data_name) const

T &	declareRestartableDataWithContext (const std::string &data_name, void *context, Args &&... args)

T &	declareRecoverableData (const std::string &data_name, Args &&... args)

T &	declareRestartableDataWithObjectName (const std::string &data_name, const std::string &object_name, Args &&... args)

T &	declareRestartableDataWithObjectNameWithContext (const std::string &data_name, const std::string &object_name, void *context, Args &&... args)

std::string	restartableName (const std::string &data_name) const

virtual void	addPostprocessorDependencyHelper (const PostprocessorName &) const

virtual void	addVectorPostprocessorDependencyHelper (const VectorPostprocessorName &) const

const ReporterContextBase &	getReporterContextBaseByName (const ReporterName &reporter_name) const

const ReporterName &	getReporterName (const std::string &param_name) const

virtual void	addReporterDependencyHelper (const ReporterName &)

PerfID	registerTimedSection (const std::string &section_name, const unsigned int level) const

PerfID	registerTimedSection (const std::string &section_name, const unsigned int level, const std::string &live_message, const bool print_dots=true) const

std::string	timedSectionName (const std::string &section_name) const

const T &	getReporterValue (const std::string &param_name, const std::size_t time_index=0)

const T &	getReporterValue (const std::string &param_name, ReporterMode mode, const std::size_t time_index=0)

const T &	getReporterValue (const std::string &param_name, const std::size_t time_index=0)

const T &	getReporterValue (const std::string &param_name, ReporterMode mode, const std::size_t time_index=0)

const T &	getReporterValueByName (const ReporterName &reporter_name, const std::size_t time_index=0)

const T &	getReporterValueByName (const ReporterName &reporter_name, ReporterMode mode, const std::size_t time_index=0)

const T &	getReporterValueByName (const ReporterName &reporter_name, const std::size_t time_index=0)

const T &	getReporterValueByName (const ReporterName &reporter_name, ReporterMode mode, const std::size_t time_index=0)

bool	hasReporterValue (const std::string &param_name) const

bool	hasReporterValue (const std::string &param_name) const

bool	hasReporterValue (const std::string &param_name) const

bool	hasReporterValue (const std::string &param_name) const

bool	hasReporterValueByName (const ReporterName &reporter_name) const

bool	hasReporterValueByName (const ReporterName &reporter_name) const

bool	hasReporterValueByName (const ReporterName &reporter_name) const

bool	hasReporterValueByName (const ReporterName &reporter_name) const

virtual void	addUserObjectDependencyHelper (const UserObject &) const

Static Protected Member Functions
static PetscErrorCode	petscNonlinearOutput (SNES, PetscInt its, PetscReal fnorm, void *void_ptr)

static PetscErrorCode	petscLinearOutput (KSP, PetscInt its, PetscReal fnorm, void *void_ptr)

Protected Attributes
const RayTracingStudy &	_study
	The RayTracingStudy. More...

const bool	_output_data
	Whether or not to output all of the Ray's data. More...

const std::vector< std::string > *const	_output_data_names
	Specific Ray data to output. More...

const bool	_output_data_nodal
	Whether or not to output the Ray's data in a nodal, linear sense. More...

const bool	_output_aux_data
	Whether or not to output the Ray's aux data. More...

const std::vector< std::string > *const	_output_aux_data_names
	Specific Ray Aux data to output. More...

std::unique_ptr< MeshBase >	_segment_mesh
	The mesh that contains the segments. More...

std::unique_ptr< libMesh::EquationSystems >	_es
	The EquationSystems. More...

libMesh::ExplicitSystem *	_sys
	The system that stores the field data. More...

unsigned int &	_file_num

unsigned int	_padding

std::vector< std::string >	_output_if_base_contains

std::string	_file_base

Real	_norm

PetscInt	_nonlinear_iter

PetscInt	_linear_iter

bool	_on_linear_residual

bool	_on_nonlinear_residual

FEProblemBase *	_problem_ptr

bool	_transient

bool	_use_displaced

libMesh::EquationSystems *	_es_ptr

MooseMesh *	_mesh_ptr

bool	_sequence

ExecFlagEnum	_execute_on

ExecFlagType	_current_execute_flag

Real &	_time

Real &	_time_old

int &	_t_step

Real &	_dt

Real &	_dt_old

unsigned int	_num

const bool	_time_step_interval_set_by_addparam

unsigned int	_time_step_interval

const Real	_min_simulation_time_interval

const Real	_simulation_time_interval

Real	_wall_time_interval

std::set< Real >	_sync_times

const Times *const	_sync_times_object

Real	_start_time

Real	_end_time

int	_start_step

int	_end_step

Real	_t_tol

bool	_sync_only

bool	_allow_output

bool	_is_advanced

OutputOnWarehouse	_advanced_execute_on

Real &	_last_output_simulation_time

std::chrono::time_point< std::chrono::steady_clock >	_last_output_wall_time

Real	_wall_time_since_last_output

const bool &	_enabled

MooseApp &	_app

Factory &	_factory

ActionFactory &	_action_factory

const std::string &	_type

const std::string &	_name

const InputParameters &	_pars

MooseApp &	_restartable_app

const std::string	_restartable_system_name

const THREAD_ID	_restartable_tid

const bool	_restartable_read_only

FEProblemBase &	_mci_feproblem

const ExecFlagEnum &	_execute_enum

MooseApp &	_pg_moose_app

const std::string	_prefix

PetscOutput *	_petsc_output

const Parallel::Communicator &	_communicator

Detailed Description

Definition at line 14 of file RayTracingNemesis.h.

Constructor & Destructor Documentation

◆ RayTracingNemesis()

RayTracingNemesis::RayTracingNemesis ( const InputParameters & parameters )

Definition at line 33 of file RayTracingNemesis.C.

                                                                    : RayTracingMeshOutput(params)
 {
 }

Member Function Documentation

◆ filename()

std::string RayTracingMeshOutput::filename ( )

overridevirtualinherited

Reimplemented from FileOutput.

Definition at line 102 of file RayTracingMeshOutput.C.

Referenced by RayTracingExodus::outputMesh(), and outputMesh().

 {
   // Append the .e extension on the base file name
   std::ostringstream output;
   output << _file_base << ".e";
 
   // Add the _000x extension to the file
   if (_file_num > 0)
     output << "-s" << std::setw(_padding) << std::setprecision(0) << std::setfill('0') << std::right
            << _file_num;
 
   // Return the filename
   return output.str();
 }

◆ output()

void RayTracingMeshOutput::output ( )

overridevirtualinherited

Implements FileOutput.

Definition at line 118 of file RayTracingMeshOutput.C.

Referenced by RayTracingMeshOutput::filename().

 {
   // Do we even have any traces?
   auto num_segments = _study.getCachedTraces().size();
   _communicator.sum(num_segments);
   if (!num_segments)
     mooseError("No cached trace segments were found in the study '", _study.name(), "'.");
 
   // Build the _inflated_neighbor_bboxes
   buildBoundingBoxes();
 
   // Build the _segment_mesh
   buildSegmentMesh();
 
   // Setup the system to store the Ray field data
   setupEquationSystem();
 
   // Fill the field data
   fillFields();
 
   // And output
   outputMesh();
 
   // Done with these
   // We don't necessarily need to create a new mesh every time, but it's easier than
   // checking if the Rays have changed from last time we built a mesh
   _es = nullptr;
   _sys = nullptr;
   _segment_mesh = nullptr;
 }

◆ outputMesh()

void RayTracingNemesis::outputMesh ( )

overridevirtual

Output the mesh - to be overridden.

Implements RayTracingMeshOutput.

Definition at line 38 of file RayTracingNemesis.C.

 {
   TIME_SECTION("outputMesh", 3, "Outputting Nemesis RayTracing Mesh");
 
   // Build the nemesis IO object
   libMesh::Nemesis_IO nemesis_io(*_segment_mesh);
   nemesis_io.set_hdf5_writing(false);
 
   // With nodal data, we need to output these variables in write_timestep
   if (_output_data_nodal)
     nemesis_io.set_output_variables(_study.rayDataNames());
   // Otherwise, there's no variables to write in write_timestep
   else
     nemesis_io.set_output_variables(std::vector<std::string>());
   // Write the timestep, which is the mesh + nodal vars (if any)
   nemesis_io.write_timestep(filename(), *_es, 1, time() + _app.getGlobalTimeOffset());
 
   // This will default to write_element_data getting all available elemental vars
   nemesis_io.set_output_variables(std::vector<std::string>());
   // Write the elemental variables, which are the variables with the constant Ray field data
   nemesis_io.write_element_data(*_es);
 
   // We write a new file every time as we don't keep track of whether or not the rays change
   ++_file_num;
 }

◆ validParams()

InputParameters RayTracingNemesis::validParams ( )

static

Definition at line 26 of file RayTracingNemesis.C.

 {
   auto params = RayTracingMeshOutput::validParams();
   params.addClassDescription("Outputs ray segments and data as segments using the Nemesis format.");
   return params;
 }

Member Data Documentation

◆ _es

std::unique_ptr<libMesh::EquationSystems> RayTracingMeshOutput::_es

protectedinherited

The EquationSystems.

Definition at line 67 of file RayTracingMeshOutput.h.

Referenced by RayTracingMeshOutput::output(), outputMesh(), RayTracingExodus::outputMesh(), and RayTracingMeshOutput::setupEquationSystem().

◆ _output_aux_data

const bool RayTracingMeshOutput::_output_aux_data

protectedinherited

Whether or not to output the Ray's aux data.

Definition at line 60 of file RayTracingMeshOutput.h.

Referenced by RayTracingMeshOutput::RayTracingMeshOutput(), and RayTracingMeshOutput::setupEquationSystem().

◆ _output_aux_data_names

const std::vector<std::string>* const RayTracingMeshOutput::_output_aux_data_names

protectedinherited

Specific Ray Aux data to output.

Definition at line 62 of file RayTracingMeshOutput.h.

Referenced by RayTracingMeshOutput::RayTracingMeshOutput(), and RayTracingMeshOutput::setupEquationSystem().

◆ _output_data

const bool RayTracingMeshOutput::_output_data

protectedinherited

Whether or not to output all of the Ray's data.

Definition at line 54 of file RayTracingMeshOutput.h.

Referenced by RayTracingMeshOutput::RayTracingMeshOutput(), and RayTracingMeshOutput::setupEquationSystem().

◆ _output_data_names

const std::vector<std::string>* const RayTracingMeshOutput::_output_data_names

protectedinherited

Specific Ray data to output.

Definition at line 56 of file RayTracingMeshOutput.h.

Referenced by RayTracingMeshOutput::RayTracingMeshOutput(), and RayTracingMeshOutput::setupEquationSystem().

◆ _output_data_nodal

const bool RayTracingMeshOutput::_output_data_nodal

protectedinherited

Whether or not to output the Ray's data in a nodal, linear sense.

Definition at line 58 of file RayTracingMeshOutput.h.

Referenced by RayTracingMeshOutput::fillFields(), outputMesh(), RayTracingExodus::outputMesh(), RayTracingMeshOutput::RayTracingMeshOutput(), and RayTracingMeshOutput::setupEquationSystem().

◆ _segment_mesh

std::unique_ptr<MeshBase> RayTracingMeshOutput::_segment_mesh

protectedinherited

The mesh that contains the segments.

Definition at line 65 of file RayTracingMeshOutput.h.

Referenced by RayTracingMeshOutput::buildSegmentMesh(), RayTracingMeshOutput::fillFields(), RayTracingMeshOutput::output(), RayTracingExodus::outputMesh(), and outputMesh().

◆ _study

const RayTracingStudy& RayTracingMeshOutput::_study

protectedinherited

The RayTracingStudy.

Definition at line 51 of file RayTracingMeshOutput.h.

Referenced by RayTracingMeshOutput::buildIDMap(), RayTracingMeshOutput::buildSegmentMesh(), RayTracingMeshOutput::fillFields(), RayTracingMeshOutput::neededNodes(), RayTracingMeshOutput::output(), outputMesh(), RayTracingExodus::outputMesh(), RayTracingMeshOutput::RayTracingMeshOutput(), RayTracingMeshOutput::setupEquationSystem(), and RayTracingMeshOutput::startingIDs().

◆ _sys

libMesh::ExplicitSystem* RayTracingMeshOutput::_sys

protectedinherited

The system that stores the field data.

Definition at line 69 of file RayTracingMeshOutput.h.

Referenced by RayTracingMeshOutput::fillFields(), RayTracingMeshOutput::output(), and RayTracingMeshOutput::setupEquationSystem().

The documentation for this class was generated from the following files:

ray_tracing/include/outputs/RayTracingNemesis.h
ray_tracing/src/outputs/RayTracingNemesis.C

Public Types

Public Member Functions

Static Public Member Functions

Public Attributes

Static Public Attributes

Protected Member Functions

Static Protected Member Functions

Protected Attributes

Detailed Description

Constructor & Destructor Documentation

◆ RayTracingNemesis()

Member Function Documentation

◆ filename()

◆ output()

◆ outputMesh()

◆ validParams()

Member Data Documentation

◆ _es

◆ _output_aux_data

◆ _output_aux_data_names

◆ _output_data

◆ _output_data_names

◆ _output_data_nodal

◆ _segment_mesh

◆ _study

◆ _sys