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ParaviewComponentAnnotationMap Class Reference

Output annotation map for paraview. More...

#include <ParaviewComponentAnnotationMap.h>

Inheritance diagram for ParaviewComponentAnnotationMap:
[legend]

Public Types

typedef DataFileName DataFileParameterType
 

Public Member Functions

 ParaviewComponentAnnotationMap (const InputParameters &parameters)
 
void setFileBase (const std::string &file_base)
 
void setFileNumber (unsigned int num)
 
unsigned int getFileNumber ()
 
virtual Real time () override
 
virtual Real timeOld ()
 
virtual Real dt ()
 
virtual Real dtOld ()
 
virtual int timeStep ()
 
const unsigned int & interval () const
 
const MultiMooseEnum & executeOn () const
 
bool isAdvanced ()
 
virtual const OutputOnWarehouse & advancedExecuteOn () const
 
void allowOutput (bool state)
 
virtual void outputStep (const ExecFlagType &type)
 
const std::set< Real > & getSyncTimes ()
 
virtual bool supportsMaterialPropertyOutput () const
 
virtual bool enabled () const
 
std::shared_ptr< MooseObject > getSharedPtr ()
 
std::shared_ptr< const MooseObject > getSharedPtr () const
 
MooseApp & getMooseApp () const
 
const std::string & type () const
 
virtual const std::string & name () const
 
std::string typeAndName () const
 
std::string errorPrefix (const std::string &error_type) const
 
void callMooseError (std::string msg, const bool with_prefix) const
 
MooseObjectParameterName uniqueParameterName (const std::string &parameter_name) const
 
const InputParameters & parameters () const
 
MooseObjectName uniqueName () const
 
const T & getParam (const std::string &name) const
 
std::vector< std::pair< T1, T2 > > getParam (const std::string &param1, const std::string &param2) const
 
const T * queryParam (const std::string &name) const
 
const T & getRenamedParam (const std::string &old_name, const std::string &new_name) const
 
T getCheckedPointerParam (const std::string &name, const std::string &error_string="") const
 
bool isParamValid (const std::string &name) const
 
bool isParamSetByUser (const std::string &nm) const
 
void paramError (const std::string &param, Args... args) const
 
void paramWarning (const std::string &param, Args... args) const
 
void paramInfo (const std::string &param, Args... args) const
 
void connectControllableParams (const std::string &parameter, const std::string &object_type, const std::string &object_name, const std::string &object_parameter) const
 
void mooseError (Args &&... args) const
 
void mooseErrorNonPrefixed (Args &&... args) const
 
void mooseDocumentedError (const std::string &repo_name, const unsigned int issue_num, Args &&... args) const
 
void mooseWarning (Args &&... args) const
 
void mooseWarningNonPrefixed (Args &&... args) const
 
void mooseDeprecated (Args &&... args) const
 
void mooseInfo (Args &&... args) const
 
std::string getDataFileName (const std::string &param) const
 
std::string getDataFileNameByName (const std::string &relative_path) const
 
std::string getDataFilePath (const std::string &relative_path) const
 
virtual void meshChanged ()
 
virtual void initialSetup ()
 
virtual void timestepSetup ()
 
virtual void jacobianSetup ()
 
virtual void residualSetup ()
 
virtual void subdomainSetup ()
 
virtual void customSetup (const ExecFlagType &)
 
const ExecFlagEnum & getExecuteOnEnum () const
 
const Function & getFunction (const std::string &name) const
 
const Function & getFunctionByName (const FunctionName &name) const
 
bool hasFunction (const std::string &param_name) const
 
bool hasFunctionByName (const FunctionName &name) const
 
bool isDefaultPostprocessorValue (const std::string &param_name, const unsigned int index=0) const
 
bool hasPostprocessor (const std::string &param_name, const unsigned int index=0) const
 
bool hasPostprocessorByName (const PostprocessorName &name) const
 
std::size_t coupledPostprocessors (const std::string &param_name) const
 
const PostprocessorName & getPostprocessorName (const std::string &param_name, const unsigned int index=0) const
 
const VectorPostprocessorValue & getVectorPostprocessorValue (const std::string &param_name, const std::string &vector_name) const
 
const VectorPostprocessorValue & getVectorPostprocessorValue (const std::string &param_name, const std::string &vector_name, bool needs_broadcast) const
 
const VectorPostprocessorValue & getVectorPostprocessorValueByName (const VectorPostprocessorName &name, const std::string &vector_name) const
 
const VectorPostprocessorValue & getVectorPostprocessorValueByName (const VectorPostprocessorName &name, const std::string &vector_name, bool needs_broadcast) const
 
const VectorPostprocessorValue & getVectorPostprocessorValueOld (const std::string &param_name, const std::string &vector_name) const
 
const VectorPostprocessorValue & getVectorPostprocessorValueOld (const std::string &param_name, const std::string &vector_name, bool needs_broadcast) const
 
const VectorPostprocessorValue & getVectorPostprocessorValueOldByName (const VectorPostprocessorName &name, const std::string &vector_name) const
 
const VectorPostprocessorValue & getVectorPostprocessorValueOldByName (const VectorPostprocessorName &name, const std::string &vector_name, bool needs_broadcast) const
 
const ScatterVectorPostprocessorValue & getScatterVectorPostprocessorValue (const std::string &param_name, const std::string &vector_name) const
 
const ScatterVectorPostprocessorValue & getScatterVectorPostprocessorValueByName (const VectorPostprocessorName &name, const std::string &vector_name) const
 
const ScatterVectorPostprocessorValue & getScatterVectorPostprocessorValueOld (const std::string &param_name, const std::string &vector_name) const
 
const ScatterVectorPostprocessorValue & getScatterVectorPostprocessorValueOldByName (const VectorPostprocessorName &name, const std::string &vector_name) const
 
bool hasVectorPostprocessor (const std::string &param_name, const std::string &vector_name) const
 
bool hasVectorPostprocessor (const std::string &param_name) const
 
bool hasVectorPostprocessorByName (const VectorPostprocessorName &name, const std::string &vector_name) const
 
bool hasVectorPostprocessorByName (const VectorPostprocessorName &name) const
 
const VectorPostprocessorName & getVectorPostprocessorName (const std::string &param_name) const
 
PerfGraph & perfGraph ()
 
const PostprocessorValue & getPostprocessorValue (const std::string &param_name, const unsigned int index=0) const
 
const PostprocessorValue & getPostprocessorValue (const std::string &param_name, const unsigned int index=0) const
 
const PostprocessorValue & getPostprocessorValueOld (const std::string &param_name, const unsigned int index=0) const
 
const PostprocessorValue & getPostprocessorValueOld (const std::string &param_name, const unsigned int index=0) const
 
const PostprocessorValue & getPostprocessorValueOlder (const std::string &param_name, const unsigned int index=0) const
 
const PostprocessorValue & getPostprocessorValueOlder (const std::string &param_name, const unsigned int index=0) const
 
virtual const PostprocessorValue & getPostprocessorValueByName (const PostprocessorName &name) const
 
virtual const PostprocessorValue & getPostprocessorValueByName (const PostprocessorName &name) const
 
const PostprocessorValue & getPostprocessorValueOldByName (const PostprocessorName &name) const
 
const PostprocessorValue & getPostprocessorValueOldByName (const PostprocessorName &name) const
 
const PostprocessorValue & getPostprocessorValueOlderByName (const PostprocessorName &name) const
 
const PostprocessorValue & getPostprocessorValueOlderByName (const PostprocessorName &name) const
 
bool isVectorPostprocessorDistributed (const std::string &param_name) const
 
bool isVectorPostprocessorDistributed (const std::string &param_name) const
 
bool isVectorPostprocessorDistributedByName (const VectorPostprocessorName &name) const
 
bool isVectorPostprocessorDistributedByName (const VectorPostprocessorName &name) const
 
const Parallel::Communicator & comm () const
 
processor_id_type n_processors () const
 
processor_id_type processor_id () const
 

Static Public Member Functions

static InputParameters validParams ()
 
static ExecFlagEnum getDefaultExecFlagEnum ()
 
static void addDeprecatedInputParameters (InputParameters &params)
 

Public Attributes

const ConsoleStream _console
 

Protected Member Functions

virtual void output ()
 
virtual std::string filename ()
 
virtual bool shouldOutput () override
 
bool checkFilename ()
 
virtual void setFileBaseInternal (const std::string &file_base)
 
bool inNonlinearTimeWindow ()
 
bool inLinearTimeWindow ()
 
virtual Real getOutputTime ()
 
virtual bool onInterval ()
 
void setWallTimeIntervalFromCommandLineParam ()
 
T & declareRestartableData (const std::string &data_name, Args &&... args)
 
ManagedValue< T > declareManagedRestartableDataWithContext (const std::string &data_name, void *context, Args &&... args)
 
const T & getRestartableData (const std::string &data_name) const
 
T & declareRestartableDataWithContext (const std::string &data_name, void *context, Args &&... args)
 
T & declareRecoverableData (const std::string &data_name, Args &&... args)
 
T & declareRestartableDataWithObjectName (const std::string &data_name, const std::string &object_name, Args &&... args)
 
T & declareRestartableDataWithObjectNameWithContext (const std::string &data_name, const std::string &object_name, void *context, Args &&... args)
 
std::string restartableName (const std::string &data_name) const
 
virtual void addPostprocessorDependencyHelper (const PostprocessorName &) const
 
virtual void addVectorPostprocessorDependencyHelper (const VectorPostprocessorName &) const
 
const ReporterName & getReporterName (const std::string &param_name) const
 
virtual void addReporterDependencyHelper (const ReporterName &)
 
PerfID registerTimedSection (const std::string &section_name, const unsigned int level) const
 
PerfID registerTimedSection (const std::string &section_name, const unsigned int level, const std::string &live_message, const bool print_dots=true) const
 
std::string timedSectionName (const std::string &section_name) const
 
const T & getReporterValue (const std::string &param_name, const std::size_t time_index=0)
 
const T & getReporterValue (const std::string &param_name, ReporterMode mode, const std::size_t time_index=0)
 
const T & getReporterValue (const std::string &param_name, const std::size_t time_index=0)
 
const T & getReporterValue (const std::string &param_name, ReporterMode mode, const std::size_t time_index=0)
 
const T & getReporterValueByName (const ReporterName &reporter_name, const std::size_t time_index=0)
 
const T & getReporterValueByName (const ReporterName &reporter_name, ReporterMode mode, const std::size_t time_index=0)
 
const T & getReporterValueByName (const ReporterName &reporter_name, const std::size_t time_index=0)
 
const T & getReporterValueByName (const ReporterName &reporter_name, ReporterMode mode, const std::size_t time_index=0)
 
bool hasReporterValue (const std::string &param_name) const
 
bool hasReporterValue (const std::string &param_name) const
 
bool hasReporterValue (const std::string &param_name) const
 
bool hasReporterValue (const std::string &param_name) const
 
bool hasReporterValueByName (const ReporterName &reporter_name) const
 
bool hasReporterValueByName (const ReporterName &reporter_name) const
 
bool hasReporterValueByName (const ReporterName &reporter_name) const
 
bool hasReporterValueByName (const ReporterName &reporter_name) const
 

Static Protected Member Functions

static PetscErrorCode petscNonlinearOutput (SNES, PetscInt its, PetscReal fnorm, void *void_ptr)
 
static PetscErrorCode petscLinearOutput (KSP, PetscInt its, PetscReal fnorm, void *void_ptr)
 

Protected Attributes

unsigned int & _file_num
 
unsigned int _padding
 
std::vector< std::string > _output_if_base_contains
 
std::string _file_base
 
Real _norm
 
PetscInt _nonlinear_iter
 
PetscInt _linear_iter
 
bool _on_linear_residual
 
bool _on_nonlinear_residual
 
FEProblemBase * _problem_ptr
 
bool _transient
 
bool _use_displaced
 
libMesh::EquationSystems * _es_ptr
 
MooseMesh * _mesh_ptr
 
bool _sequence
 
ExecFlagEnum _execute_on
 
ExecFlagType _current_execute_flag
 
Real & _time
 
Real & _time_old
 
int & _t_step
 
Real & _dt
 
Real & _dt_old
 
unsigned int _num
 
const bool _time_step_interval_set_by_addparam
 
unsigned int _time_step_interval
 
const Real _min_simulation_time_interval
 
const Real _simulation_time_interval
 
Real _wall_time_interval
 
std::set< Real > _sync_times
 
const Times *const _sync_times_object
 
Real _start_time
 
Real _end_time
 
int _start_step
 
int _end_step
 
Real _t_tol
 
bool _sync_only
 
bool _allow_output
 
bool _is_advanced
 
OutputOnWarehouse _advanced_execute_on
 
Real & _last_output_simulation_time
 
std::chrono::time_point< std::chrono::steady_clock > _last_output_wall_time
 
Real _wall_time_since_last_output
 
const bool & _enabled
 
MooseApp & _app
 
const std::string _type
 
const std::string _name
 
const InputParameters & _pars
 
Factory & _factory
 
ActionFactory & _action_factory
 
MooseApp & _restartable_app
 
const std::string _restartable_system_name
 
const THREAD_ID _restartable_tid
 
const bool _restartable_read_only
 
FEProblemBase & _mci_feproblem
 
const ExecFlagEnum & _execute_enum
 
MooseApp & _pg_moose_app
 
const std::string _prefix
 
PetscOutput * _petsc_output
 
const Parallel::Communicator & _communicator
 

Detailed Description

Output annotation map for paraview.

The map is a JSON file that can be loaded in paraview to see the mapping from block color to component name

Note: the annotation map works with paraview 5.8+

Definition at line 22 of file ParaviewComponentAnnotationMap.h.

Constructor & Destructor Documentation

◆ ParaviewComponentAnnotationMap()

ParaviewComponentAnnotationMap::ParaviewComponentAnnotationMap ( const InputParameters &  parameters)

Definition at line 37 of file ParaviewComponentAnnotationMap.C.

38  : FileOutput(parameters)
39 {
40  THMProblem * thm_problem = dynamic_cast<THMProblem *>(_problem_ptr);
41  if (!thm_problem)
42  mooseError(name(),
43  ": ParaviewComponentAnnotationMap can only be used with THM-based simulation.");
44 }
THMProblem
Specialization of FEProblem to run with component subsystem.
Definition: THMProblem.h:18
FileOutput::name
virtual const std::string & name() const
FileOutput::_problem_ptr
FEProblemBase * _problem_ptr
FileOutput::mooseError
void mooseError(Args &&... args) const
FileOutput::parameters
const InputParameters & parameters() const
FileOutput::FileOutput
FileOutput(const InputParameters &parameters)

Member Function Documentation

◆ filename()

std::string ParaviewComponentAnnotationMap::filename ( )
protectedvirtual

Reimplemented from FileOutput.

Definition at line 87 of file ParaviewComponentAnnotationMap.C.

Referenced by output().

88 {
89  return _file_base + ".json";
90 }
FileOutput::_file_base
std::string _file_base

◆ output()

void ParaviewComponentAnnotationMap::output ( )
protectedvirtual

Implements FileOutput.

Definition at line 47 of file ParaviewComponentAnnotationMap.C.

48 {
49  if (processor_id() == 0)
50  {
51  THMProblem * thm_problem = dynamic_cast<THMProblem *>(_problem_ptr);
52  const std::vector<std::shared_ptr<Component>> & comps = thm_problem->getComponents();
53 
54  std::vector<Real> clrs;
55  unsigned int clr_idx = 0;
56 
57  std::vector<std::string> anns;
58  for (auto & comp : comps)
59  {
60  const auto & subdomains = comp->getSubdomainNames();
61  for (auto & sn : subdomains)
62  {
63  SubdomainID sid = _mesh_ptr->getSubdomainID(sn);
64 
65  anns.push_back(Moose::stringify(sid));
66  anns.push_back(sn);
67 
68  clrs.push_back(kaams_colors[clr_idx++]);
69  clrs.push_back(kaams_colors[clr_idx++]);
70  clrs.push_back(kaams_colors[clr_idx++]);
71  // 12 colors with RGB values
72  clr_idx = clr_idx % (12 * 3);
73  }
74  }
75 
76  nlohmann::json json;
77  json[0]["Annotations"] = anns;
78  json[0]["IndexedColors"] = clrs;
79  json[0]["Name"] = _file_base;
80 
81  std::ofstream out(filename().c_str());
82  out << std::setw(4) << json << std::endl;
83  }
84 }
THMProblem
Specialization of FEProblem to run with component subsystem.
Definition: THMProblem.h:18
FileOutput::_file_base
std::string _file_base
kaams_colors
static const std::vector< Real > kaams_colors
KAAMS color profile from paraview.
Definition: ParaviewComponentAnnotationMap.C:22
FileOutput::_problem_ptr
FEProblemBase * _problem_ptr
Moose::stringify
std::string stringify(const T &t)
out
OStreamProxy out
FileOutput::_mesh_ptr
MooseMesh * _mesh_ptr
Simulation::getComponents
const std::vector< std::shared_ptr< Component > > & getComponents()
Return list of components available in the simulation.
Definition: Simulation.h:117
libMesh::ParallelObject::processor_id
processor_id_type processor_id() const
MooseMesh::getSubdomainID
SubdomainID getSubdomainID(const SubdomainName &subdomain_name) const

◆ validParams()

InputParameters ParaviewComponentAnnotationMap::validParams ( )
static

Definition at line 28 of file ParaviewComponentAnnotationMap.C.

29 {
30  InputParameters params = FileOutput::validParams();
31  ExecFlagEnum execute_options = MooseUtils::getDefaultExecFlagEnum();
32  execute_options = {EXEC_INITIAL};
33  params.set<ExecFlagEnum>("execute_on") = execute_options;
34  return params;
35 }
InputParameters::set
T & set(const std::string &name, bool quiet_mode=false)
MooseUtils::getDefaultExecFlagEnum
ExecFlagEnum getDefaultExecFlagEnum()
FileOutput::validParams
static InputParameters validParams()
EXEC_INITIAL
const ExecFlagType EXEC_INITIAL
The documentation for this class was generated from the following files:
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