GeochemistryTimeIndependentReactor Class Reference

Class that controls the time independent (and spatially independent) geochemistry reactions. More...

#include <GeochemistryTimeIndependentReactor.h>

Inheritance diagram for GeochemistryTimeIndependentReactor:

Public Types
enum	TEST_TYPE
typedef DataFileName	DataFileParameterType

Public Member Functions
	GeochemistryTimeIndependentReactor (const InputParameters &parameters)
virtual void	initialize () override
virtual void	finalize () override
virtual void	initialSetup () override
virtual void	execute () override
virtual const GeochemicalSystem &	getGeochemicalSystem (dof_id_type node_id) const override
virtual const std::stringstream &	getSolverOutput (dof_id_type node_id) const override
virtual unsigned	getSolverIterations (dof_id_type node_id) const override
virtual Real	getSolverResidual (dof_id_type node_id) const override
virtual const DenseVector< Real > &	getMoleAdditions (dof_id_type node_id) const override
virtual Real	getMolesDumped (dof_id_type node_id, const std::string &species) const override
virtual void	threadJoin (const UserObject &) override
const PertinentGeochemicalSystem &	getPertinentGeochemicalSystem () const
	returns a reference to the PertinentGeochemicalSystem used to creat the ModelGeochemicalDatabase
virtual void	subdomainSetup () override
bool	isUniqueNodeExecute ()
virtual Real	spatialValue (const Point &) const
virtual const std::vector< Point >	spatialPoints () const
void	setPrimaryThreadCopy (UserObject *primary)
UserObject *	primaryThreadCopy ()
SubProblem &	getSubProblem () const
bool	shouldDuplicateInitialExecution () const
void	gatherSum (T &value)
void	gatherMax (T &value)
void	gatherMin (T &value)
void	gatherProxyValueMax (T1 &proxy, T2 &value)
void	gatherProxyValueMin (T1 &proxy, T2 &value)
std::set< UserObjectName >	getDependObjects () const
const std::set< std::string > &	getRequestedItems () override
const std::set< std::string > &	getSuppliedItems () override
unsigned int	systemNumber () const
virtual bool	needThreadedCopy () const
virtual bool	enabled () const
std::shared_ptr< MooseObject >	getSharedPtr ()
std::shared_ptr< const MooseObject >	getSharedPtr () const
bool	isKokkosObject () const
MooseApp &	getMooseApp () const
const std::string &	type () const
const std::string &	name () const
std::string	typeAndName () const
MooseObjectParameterName	uniqueParameterName (const std::string &parameter_name) const
MooseObjectName	uniqueName () const
const InputParameters &	parameters () const
const hit::Node *	getHitNode () const
bool	hasBase () const
const std::string &	getBase () const
const T &	getParam (const std::string &name) const
std::vector< std::pair< T1, T2 > >	getParam (const std::string &param1, const std::string &param2) const
const T *	queryParam (const std::string &name) const
const T &	getRenamedParam (const std::string &old_name, const std::string &new_name) const
T	getCheckedPointerParam (const std::string &name, const std::string &error_string="") const
bool	isParamValid (const std::string &name) const
bool	isParamSetByUser (const std::string &name) const
void	connectControllableParams (const std::string &parameter, const std::string &object_type, const std::string &object_name, const std::string &object_parameter) const
void	paramError (const std::string &param, Args... args) const
void	paramWarning (const std::string &param, Args... args) const
void	paramWarning (const std::string &param, Args... args) const
void	paramInfo (const std::string &param, Args... args) const
std::string	messagePrefix (const bool hit_prefix=true) const
std::string	errorPrefix (const std::string &) const
void	mooseError (Args &&... args) const
void	mooseDocumentedError (const std::string &repo_name, const unsigned int issue_num, Args &&... args) const
void	mooseErrorNonPrefixed (Args &&... args) const
void	mooseWarning (Args &&... args) const
void	mooseWarning (Args &&... args) const
void	mooseWarningNonPrefixed (Args &&... args) const
void	mooseWarningNonPrefixed (Args &&... args) const
void	mooseDeprecated (Args &&... args) const
void	mooseDeprecated (Args &&... args) const
void	mooseDeprecatedNoTrace (Args &&... args) const
void	mooseInfo (Args &&... args) const
void	callMooseError (std::string msg, const bool with_prefix, const hit::Node *node=nullptr, const bool show_trace=true) const
std::string	getDataFileName (const std::string &param) const
std::string	getDataFileNameByName (const std::string &relative_path) const
std::string	getDataFilePath (const std::string &relative_path) const
virtual void	timestepSetup ()
virtual void	jacobianSetup ()
virtual void	residualSetup ()
virtual void	customSetup (const ExecFlagType &)
const ExecFlagEnum &	getExecuteOnEnum () const
UserObjectName	getUserObjectName (const std::string &param_name) const
const T &	getUserObject (const std::string &param_name, bool is_dependency=true) const
const T &	getUserObjectByName (const UserObjectName &object_name, bool is_dependency=true) const
const UserObjectBase &	getUserObjectBase (const std::string &param_name, bool is_dependency=true) const
const UserObjectBase &	getUserObjectBaseByName (const UserObjectName &object_name, bool is_dependency=true) const
const std::vector< SubdomainName > &	blocks () const
unsigned int	numBlocks () const
virtual const std::set< SubdomainID > &	blockIDs () const
unsigned int	blocksMaxDimension () const
bool	hasBlocks (const SubdomainName &name) const
bool	hasBlocks (const std::vector< SubdomainName > &names) const
bool	hasBlocks (const std::set< SubdomainName > &names) const
bool	hasBlocks (SubdomainID id) const
bool	hasBlocks (const std::vector< SubdomainID > &ids) const
bool	hasBlocks (const std::set< SubdomainID > &ids) const
bool	isBlockSubset (const std::set< SubdomainID > &ids) const
bool	isBlockSubset (const std::vector< SubdomainID > &ids) const
bool	hasBlockMaterialProperty (const std::string &prop_name)
const std::set< SubdomainID > &	meshBlockIDs () const
virtual bool	blockRestricted () const
virtual void	checkVariable (const MooseVariableFieldBase &variable) const
virtual const std::set< BoundaryID > &	boundaryIDs () const
const std::vector< BoundaryName > &	boundaryNames () const
unsigned int	numBoundaryIDs () const
bool	hasBoundary (const BoundaryName &name) const
bool	hasBoundary (const std::vector< BoundaryName > &names) const
bool	hasBoundary (const BoundaryID &id) const
bool	hasBoundary (const std::vector< BoundaryID > &ids, TEST_TYPE type=ALL) const
bool	hasBoundary (const std::set< BoundaryID > &ids, TEST_TYPE type=ALL) const
bool	hasBoundary (const std::vector< BoundaryID > &ids, TEST_TYPE type=ALL) const
bool	hasBoundary (const std::set< BoundaryID > &ids, TEST_TYPE type=ALL) const
bool	isBoundarySubset (const std::set< BoundaryID > &ids) const
bool	isBoundarySubset (const std::vector< BoundaryID > &ids) const
bool	hasBoundaryMaterialProperty (const std::string &prop_name) const
virtual bool	boundaryRestricted () const
const std::set< BoundaryID > &	meshBoundaryIDs () const
virtual bool	checkVariableBoundaryIntegrity () const
virtual const VariableValue &	coupledValueByName (const std::string &var_name)
virtual const ArrayVariableValue &	coupledArrayValueByName (const std::string &var_name)
const std::unordered_map< std::string, std::vector< MooseVariableFieldBase * > > &	getCoupledVars () const
const std::vector< MooseVariableFieldBase * > &	getCoupledMooseVars () const
const std::vector< MooseVariable * > &	getCoupledStandardMooseVars () const
const std::vector< VectorMooseVariable * > &	getCoupledVectorMooseVars () const
const std::vector< ArrayMooseVariable * > &	getCoupledArrayMooseVars () const
void	addFEVariableCoupleableVectorTag (TagID tag)
void	addFEVariableCoupleableMatrixTag (TagID tag)
std::set< TagID > &	getFEVariableCoupleableVectorTags ()
const std::set< TagID > &	getFEVariableCoupleableVectorTags () const
std::set< TagID > &	getFEVariableCoupleableMatrixTags ()
const std::set< TagID > &	getFEVariableCoupleableMatrixTags () const
auto &	getWritableCoupledVariables () const
bool	hasWritableCoupledVariables () const
const ADVariableValue *	getADDefaultValue (const std::string &var_name) const
const ADVectorVariableValue *	getADDefaultVectorValue (const std::string &var_name) const
const ADVariableGradient &	getADDefaultGradient () const
const ADVectorVariableGradient &	getADDefaultVectorGradient () const
const ADVariableSecond &	getADDefaultSecond () const
const ADVectorVariableCurl &	getADDefaultCurl () const
Moose::Kokkos::VariableValue	kokkosCoupledVectorTagValueByName (const std::string &var_name, const std::string &tag_name, unsigned int comp=0) const
Moose::Kokkos::VariableValue	kokkosCoupledVectorTagValuesByName (const std::string &var_name, const std::string &tag_name) const
Moose::Kokkos::VariableGradient	kokkosCoupledVectorTagGradientByName (const std::string &var_name, const std::string &tag_name, unsigned int comp=0) const
Moose::Kokkos::VariableGradient	kokkosCoupledVectorTagGradientsByName (const std::string &var_name, const std::string &tag_name) const
Moose::Kokkos::VariableValue	kokkosCoupledVectorTagNodalValueByName (const std::string &var_name, const std::string &tag_name, unsigned int comp=0) const
Moose::Kokkos::VariableValue	kokkosCoupledVectorTagNodalValuesByName (const std::string &var_name, const std::string &tag_name) const
Moose::Kokkos::VariableValue	kokkosCoupledVectorTagDofValueByName (const std::string &var_name, const std::string &tag_name, unsigned int comp=0) const
Moose::Kokkos::VariableValue	kokkosCoupledVectorTagDofValuesByName (const std::string &var_name, const std::string &tag_name) const
Moose::Kokkos::VariableValue	kokkosCoupledVectorTagValue (const std::string &var_name, const std::string &tag_param_name, unsigned int comp=0) const
Moose::Kokkos::VariableValue	kokkosCoupledVectorTagValues (const std::string &var_name, const std::string &tag_param_name) const
Moose::Kokkos::VariableGradient	kokkosCoupledVectorTagGradient (const std::string &var_name, const std::string &tag_param_name, unsigned int comp=0) const
Moose::Kokkos::VariableGradient	kokkosCoupledVectorTagGradients (const std::string &var_name, const std::string &tag_param_name) const
Moose::Kokkos::VariableValue	kokkosCoupledVectorTagNodalValue (const std::string &var_name, const std::string &tag_param_name, unsigned int comp=0) const
Moose::Kokkos::VariableValue	kokkosCoupledVectorTagNodalValues (const std::string &var_name, const std::string &tag_param_name) const
Moose::Kokkos::VariableValue	kokkosCoupledVectorTagDofValue (const std::string &var_name, const std::string &tag_param_name, unsigned int comp=0) const
Moose::Kokkos::VariableValue	kokkosCoupledVectorTagDofValues (const std::string &var_name, const std::string &tag_param_name) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorTagVectorValueByName (const std::string &var_name, const std::string &tag_name, unsigned int comp=0) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorTagVectorValuesByName (const std::string &var_name, const std::string &tag_name) const
Moose::Kokkos::VectorVariableGradient	kokkosCoupledVectorTagVectorGradientByName (const std::string &var_name, const std::string &tag_name, unsigned int comp=0) const
Moose::Kokkos::VectorVariableGradient	kokkosCoupledVectorTagVectorGradientsByName (const std::string &var_name, const std::string &tag_name) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorTagVectorNodalValueByName (const std::string &var_name, const std::string &tag_name, unsigned int comp=0) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorTagVectorNodalValuesByName (const std::string &var_name, const std::string &tag_name) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorTagVectorDofValueByName (const std::string &var_name, const std::string &tag_name, unsigned int comp=0) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorTagVectorDofValuesByName (const std::string &var_name, const std::string &tag_name) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorTagVectorValue (const std::string &var_name, const std::string &tag_param_name, unsigned int comp=0) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorTagVectorValues (const std::string &var_name, const std::string &tag_param_name) const
Moose::Kokkos::VectorVariableGradient	kokkosCoupledVectorTagVectorGradient (const std::string &var_name, const std::string &tag_param_name, unsigned int comp=0) const
Moose::Kokkos::VectorVariableGradient	kokkosCoupledVectorTagVectorGradients (const std::string &var_name, const std::string &tag_param_name) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorTagVectorNodalValue (const std::string &var_name, const std::string &tag_param_name, unsigned int comp=0) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorTagVectorNodalValues (const std::string &var_name, const std::string &tag_param_name) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorTagVectorDofValue (const std::string &var_name, const std::string &tag_param_name, unsigned int comp=0) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorTagVectorDofValues (const std::string &var_name, const std::string &tag_param_name) const
Moose::Kokkos::VariableValue	kokkosCoupledValue (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::VariableValue	kokkosCoupledValues (const std::string &var_name) const
Moose::Kokkos::VariableGradient	kokkosCoupledGradient (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::VariableGradient	kokkosCoupledGradients (const std::string &var_name) const
Moose::Kokkos::VariableValue	kokkosCoupledNodalValue (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::VariableValue	kokkosCoupledNodalValues (const std::string &var_name) const
Moose::Kokkos::VariableValue	kokkosCoupledDofValue (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::VariableValue	kokkosCoupledDofValues (const std::string &var_name) const
Moose::Kokkos::VariableValue	kokkosCoupledValueOld (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::VariableValue	kokkosCoupledValuesOld (const std::string &var_name) const
Moose::Kokkos::VariableGradient	kokkosCoupledGradientOld (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::VariableGradient	kokkosCoupledGradientsOld (const std::string &var_name) const
Moose::Kokkos::VariableValue	kokkosCoupledNodalValueOld (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::VariableValue	kokkosCoupledNodalValuesOld (const std::string &var_name) const
Moose::Kokkos::VariableValue	kokkosCoupledDofValueOld (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::VariableValue	kokkosCoupledDofValuesOld (const std::string &var_name) const
Moose::Kokkos::VariableValue	kokkosCoupledValueOlder (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::VariableValue	kokkosCoupledValuesOlder (const std::string &var_name) const
Moose::Kokkos::VariableGradient	kokkosCoupledGradientOlder (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::VariableGradient	kokkosCoupledGradientsOlder (const std::string &var_name) const
Moose::Kokkos::VariableValue	kokkosCoupledNodalValueOlder (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::VariableValue	kokkosCoupledNodalValuesOlder (const std::string &var_name) const
Moose::Kokkos::VariableValue	kokkosCoupledDofValueOlder (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::VariableValue	kokkosCoupledDofValuesOlder (const std::string &var_name) const
Moose::Kokkos::VariableValue	kokkosCoupledDot (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::VariableValue	kokkosCoupledDots (const std::string &var_name) const
Moose::Kokkos::VariableValue	kokkosCoupledNodalDot (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::VariableValue	kokkosCoupledNodalDots (const std::string &var_name) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorValue (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::VectorVariableGradient	kokkosCoupledVectorGradient (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorNodalValue (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorDofValue (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorValues (const std::string &var_name) const
Moose::Kokkos::VectorVariableGradient	kokkosCoupledVectorGradients (const std::string &var_name) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorNodalValues (const std::string &var_name) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorDofValues (const std::string &var_name) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorValueOld (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::VectorVariableGradient	kokkosCoupledVectorGradientOld (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorNodalValueOld (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorDofValueOld (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorValuesOld (const std::string &var_name) const
Moose::Kokkos::VectorVariableGradient	kokkosCoupledVectorGradientsOld (const std::string &var_name) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorNodalValuesOld (const std::string &var_name) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorDofValuesOld (const std::string &var_name) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorValueOlder (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::VectorVariableGradient	kokkosCoupledVectorGradientOlder (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorNodalValueOlder (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorDofValueOlder (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorValuesOlder (const std::string &var_name) const
Moose::Kokkos::VectorVariableGradient	kokkosCoupledVectorGradientsOlder (const std::string &var_name) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorNodalValuesOlder (const std::string &var_name) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorDofValuesOlder (const std::string &var_name) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorDot (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorNodalDot (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorDots (const std::string &var_name) const
Moose::Kokkos::VectorVariableValue	kokkosCoupledVectorNodalDots (const std::string &var_name) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledVectorTagValueByName (const std::string &var_name, const std::string &tag_name, unsigned int comp=0) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledVectorTagValuesByName (const std::string &var_name, const std::string &tag_name) const
Moose::Kokkos::ADVariableGradient	kokkosADCoupledVectorTagGradientByName (const std::string &var_name, const std::string &tag_name, unsigned int comp=0) const
Moose::Kokkos::ADVariableGradient	kokkosADCoupledVectorTagGradientsByName (const std::string &var_name, const std::string &tag_name) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledVectorTagNodalValueByName (const std::string &var_name, const std::string &tag_name, unsigned int comp=0) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledVectorTagNodalValuesByName (const std::string &var_name, const std::string &tag_name) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledVectorTagDofValueByName (const std::string &var_name, const std::string &tag_name, unsigned int comp=0) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledVectorTagDofValuesByName (const std::string &var_name, const std::string &tag_name) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledVectorTagValue (const std::string &var_name, const std::string &tag_param_name, unsigned int comp=0) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledVectorTagValues (const std::string &var_name, const std::string &tag_param_name) const
Moose::Kokkos::ADVariableGradient	kokkosADCoupledVectorTagGradient (const std::string &var_name, const std::string &tag_param_name, unsigned int comp=0) const
Moose::Kokkos::ADVariableGradient	kokkosADCoupledVectorTagGradients (const std::string &var_name, const std::string &tag_param_name) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledVectorTagNodalValue (const std::string &var_name, const std::string &tag_param_name, unsigned int comp=0) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledVectorTagNodalValues (const std::string &var_name, const std::string &tag_param_name) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledVectorTagDofValue (const std::string &var_name, const std::string &tag_param_name, unsigned int comp=0) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledVectorTagDofValues (const std::string &var_name, const std::string &tag_param_name) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledValue (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledValues (const std::string &var_name) const
Moose::Kokkos::ADVariableGradient	kokkosADCoupledGradient (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::ADVariableGradient	kokkosADCoupledGradients (const std::string &var_name) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledNodalValue (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledNodalValues (const std::string &var_name) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledDofValue (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledDofValues (const std::string &var_name) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledValueOld (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledValuesOld (const std::string &var_name) const
Moose::Kokkos::ADVariableGradient	kokkosADCoupledGradientOld (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::ADVariableGradient	kokkosADCoupledGradientsOld (const std::string &var_name) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledNodalValueOld (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledNodalValuesOld (const std::string &var_name) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledDofValueOld (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledDofValuesOld (const std::string &var_name) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledValueOlder (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledValuesOlder (const std::string &var_name) const
Moose::Kokkos::ADVariableGradient	kokkosADCoupledGradientOlder (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::ADVariableGradient	kokkosADCoupledGradientsOlder (const std::string &var_name) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledNodalValueOlder (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledNodalValuesOlder (const std::string &var_name) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledDofValueOlder (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledDofValuesOlder (const std::string &var_name) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledDot (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledDots (const std::string &var_name) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledNodalDot (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::ADVariableValue	kokkosADCoupledNodalDots (const std::string &var_name) const
Moose::Kokkos::Scalar< const Real >	kokkosCoupledDotDu (const std::string &var_name, unsigned int comp=0) const
Moose::Kokkos::VariableValue	kokkosZeroValue () const
Moose::Kokkos::VariableGradient	kokkosZeroGradient () const
Moose::Kokkos::VariableValue	kokkosZeroNodalValue () const
const std::vector< MooseVariableScalar * > &	getCoupledMooseScalarVars ()
const std::set< TagID > &	getScalarVariableCoupleableVectorTags () const
const std::set< TagID > &	getScalarVariableCoupleableMatrixTags () const
const std::set< MooseVariableFieldBase * > &	getMooseVariableDependencies () const
std::set< MooseVariableFieldBase * >	checkAllVariables (const DofObjectType &dof_object, const std::set< MooseVariableFieldBase * > &vars_to_omit={})
virtual std::set< MooseVariableFieldBase * >	checkVariables (const libMesh::Node &node, const std::set< MooseVariableFieldBase * > &vars_to_check)
std::set< MooseVariableFieldBase * >	checkVariables (const libMesh::Elem &element, const std::set< MooseVariableFieldBase * > &vars_to_check)
void	addMooseVariableDependency (MooseVariableFieldBase *var)
void	addMooseVariableDependency (const std::vector< MooseVariableFieldBase * > &vars)
bool	isImplicit ()
Moose::StateArg	determineState () const
void	setRandomResetFrequency (ExecFlagType exec_flag)
unsigned long	getRandomLong () const
Real	getRandomReal () const
unsigned int	getSeed (std::size_t id)
unsigned int	getMasterSeed () const
bool	isNodal () const
ExecFlagType	getResetOnTime () const
void	setRandomDataPointer (RandomData *random_data)
bool	hasUserObject (const std::string &param_name) const
bool	hasUserObject (const std::string &param_name) const
bool	hasUserObject (const std::string &param_name) const
bool	hasUserObject (const std::string &param_name) const
bool	hasUserObjectByName (const UserObjectName &object_name) const
bool	hasUserObjectByName (const UserObjectName &object_name) const
bool	hasUserObjectByName (const UserObjectName &object_name) const
bool	hasUserObjectByName (const UserObjectName &object_name) const
const Function &	getFunction (const std::string &name) const
const Function &	getFunctionByName (const FunctionName &name) const
bool	hasFunction (const std::string &param_name) const
bool	hasFunctionByName (const FunctionName &name) const
Moose::Kokkos::Function	getKokkosFunction (const std::string &name) const
const T &	getKokkosFunction (const std::string &name) const
Moose::Kokkos::Function	getKokkosFunctionByName (const FunctionName &name) const
const T &	getKokkosFunctionByName (const FunctionName &name) const
bool	hasKokkosFunction (const std::string &param_name) const
bool	hasKokkosFunctionByName (const FunctionName &name) const
bool	isDefaultPostprocessorValue (const std::string &param_name, const unsigned int index=0) const
bool	hasPostprocessor (const std::string &param_name, const unsigned int index=0) const
bool	hasPostprocessorByName (const PostprocessorName &name) const
std::size_t	coupledPostprocessors (const std::string &param_name) const
const PostprocessorName &	getPostprocessorName (const std::string &param_name, const unsigned int index=0) const
const VectorPostprocessorValue &	getVectorPostprocessorValue (const std::string &param_name, const std::string &vector_name) const
const VectorPostprocessorValue &	getVectorPostprocessorValue (const std::string &param_name, const std::string &vector_name, bool needs_broadcast) const
const VectorPostprocessorValue &	getVectorPostprocessorValueByName (const VectorPostprocessorName &name, const std::string &vector_name) const
const VectorPostprocessorValue &	getVectorPostprocessorValueByName (const VectorPostprocessorName &name, const std::string &vector_name, bool needs_broadcast) const
const VectorPostprocessorValue &	getVectorPostprocessorValueOld (const std::string &param_name, const std::string &vector_name) const
const VectorPostprocessorValue &	getVectorPostprocessorValueOld (const std::string &param_name, const std::string &vector_name, bool needs_broadcast) const
const VectorPostprocessorValue &	getVectorPostprocessorValueOldByName (const VectorPostprocessorName &name, const std::string &vector_name) const
const VectorPostprocessorValue &	getVectorPostprocessorValueOldByName (const VectorPostprocessorName &name, const std::string &vector_name, bool needs_broadcast) const
const ScatterVectorPostprocessorValue &	getScatterVectorPostprocessorValue (const std::string &param_name, const std::string &vector_name) const
const ScatterVectorPostprocessorValue &	getScatterVectorPostprocessorValueByName (const VectorPostprocessorName &name, const std::string &vector_name) const
const ScatterVectorPostprocessorValue &	getScatterVectorPostprocessorValueOld (const std::string &param_name, const std::string &vector_name) const
const ScatterVectorPostprocessorValue &	getScatterVectorPostprocessorValueOldByName (const VectorPostprocessorName &name, const std::string &vector_name) const
bool	hasVectorPostprocessor (const std::string &param_name, const std::string &vector_name) const
bool	hasVectorPostprocessor (const std::string &param_name) const
bool	hasVectorPostprocessorByName (const VectorPostprocessorName &name, const std::string &vector_name) const
bool	hasVectorPostprocessorByName (const VectorPostprocessorName &name) const
const VectorPostprocessorName &	getVectorPostprocessorName (const std::string &param_name) const
T &	getSampler (const std::string &name)
Sampler &	getSampler (const std::string &name)
T &	getSamplerByName (const SamplerName &name)
Sampler &	getSamplerByName (const SamplerName &name)
virtual void	meshChanged ()
virtual void	meshDisplaced ()
PerfGraph &	perfGraph ()
const PostprocessorValue &	getPostprocessorValue (const std::string &param_name, const unsigned int index=0) const
const PostprocessorValue &	getPostprocessorValue (const std::string &param_name, const unsigned int index=0) const
const PostprocessorValue &	getPostprocessorValueOld (const std::string &param_name, const unsigned int index=0) const
const PostprocessorValue &	getPostprocessorValueOld (const std::string &param_name, const unsigned int index=0) const
const PostprocessorValue &	getPostprocessorValueOlder (const std::string &param_name, const unsigned int index=0) const
const PostprocessorValue &	getPostprocessorValueOlder (const std::string &param_name, const unsigned int index=0) const
virtual const PostprocessorValue &	getPostprocessorValueByName (const PostprocessorName &name) const
virtual const PostprocessorValue &	getPostprocessorValueByName (const PostprocessorName &name) const
const PostprocessorValue &	getPostprocessorValueOldByName (const PostprocessorName &name) const
const PostprocessorValue &	getPostprocessorValueOldByName (const PostprocessorName &name) const
const PostprocessorValue &	getPostprocessorValueOlderByName (const PostprocessorName &name) const
const PostprocessorValue &	getPostprocessorValueOlderByName (const PostprocessorName &name) const
bool	isVectorPostprocessorDistributed (const std::string &param_name) const
bool	isVectorPostprocessorDistributed (const std::string &param_name) const
bool	isVectorPostprocessorDistributedByName (const VectorPostprocessorName &name) const
bool	isVectorPostprocessorDistributedByName (const VectorPostprocessorName &name) const
const Distribution &	getDistribution (const std::string &name) const
const T &	getDistribution (const std::string &name) const
const Distribution &	getDistribution (const std::string &name) const
const T &	getDistribution (const std::string &name) const
const Distribution &	getDistributionByName (const DistributionName &name) const
const T &	getDistributionByName (const std::string &name) const
const Distribution &	getDistributionByName (const DistributionName &name) const
const T &	getDistributionByName (const std::string &name) const
const Parallel::Communicator &	comm () const
processor_id_type	n_processors () const
processor_id_type	processor_id () const

Static Public Member Functions
static InputParameters	validParams ()
static InputParameters	sharedParams ()
	contains params that are shared with AddGeochemistrySolverAction and its children
static void	callMooseError (MooseApp *const app, const InputParameters &params, std::string msg, const bool with_prefix, const hit::Node *node, const bool show_trace=true)
static void	sort (typename std::vector< T > &vector)
static void	sortDFS (typename std::vector< T > &vector)
static void	cyclicDependencyError (CyclicDependencyException< T2 > &e, const std::string &header, NameFunc &&name_func)
static void	cyclicDependencyError (CyclicDependencyException< T2 > &e, const std::string &header)
static bool	restricted (const std::set< BoundaryID > &ids)

Public Attributes
	ALL
	ANY
	usingCombinedWarningSolutionWarnings
const ConsoleStream	_console

Static Public Attributes
static const std::string	type_param
static const std::string	name_param
static const std::string	unique_name_param
static const std::string	app_param
static const std::string	moose_base_param
static const std::string	kokkos_object_param
static constexpr auto	SYSTEM
static constexpr auto	NAME

Protected Member Functions
virtual void	addPostprocessorDependencyHelper (const PostprocessorName &name) const override
virtual void	addVectorPostprocessorDependencyHelper (const VectorPostprocessorName &name) const override
virtual void	addUserObjectDependencyHelper (const UserObjectBase &uo) const override
void	addReporterDependencyHelper (const ReporterName &reporter_name) override
void	flagInvalidSolutionInternal (const InvalidSolutionID invalid_solution_id) const
InvalidSolutionID	registerInvalidSolutionInternal (const std::string &message, const bool warning) const
const ReporterContextBase &	getReporterContextBaseByName (const ReporterName &reporter_name) const
const ReporterName &	getReporterName (const std::string &param_name) const
T &	declareRestartableData (const std::string &data_name, Args &&... args)
ManagedValue< T >	declareManagedRestartableDataWithContext (const std::string &data_name, void *context, Args &&... args)
const T &	getRestartableData (const std::string &data_name) const
T &	declareRestartableDataWithContext (const std::string &data_name, void *context, Args &&... args)
T &	declareRecoverableData (const std::string &data_name, Args &&... args)
T &	declareRestartableDataWithObjectName (const std::string &data_name, const std::string &object_name, Args &&... args)
T &	declareRestartableDataWithObjectNameWithContext (const std::string &data_name, const std::string &object_name, void *context, Args &&... args)
std::string	restartableName (const std::string &data_name) const
const T &	getMeshProperty (const std::string &data_name, const std::string &prefix)
const T &	getMeshProperty (const std::string &data_name)
bool	hasMeshProperty (const std::string &data_name, const std::string &prefix) const
bool	hasMeshProperty (const std::string &data_name, const std::string &prefix) const
bool	hasMeshProperty (const std::string &data_name) const
bool	hasMeshProperty (const std::string &data_name) const
std::string	meshPropertyName (const std::string &data_name) const
PerfID	registerTimedSection (const std::string &section_name, const unsigned int level) const
PerfID	registerTimedSection (const std::string &section_name, const unsigned int level, const std::string &live_message, const bool print_dots=true) const
std::string	timedSectionName (const std::string &section_name) const
virtual bool	hasBlockMaterialPropertyHelper (const std::string &prop_name)
void	initializeBlockRestrictable (const MooseObject *moose_object)
void	initializeKokkosBlockRestrictable ()
Moose::CoordinateSystemType	getBlockCoordSystem ()
KOKKOS_FUNCTION dof_id_type	numKokkosBlockElements () const
KOKKOS_FUNCTION dof_id_type	numKokkosBlockNodes () const
KOKKOS_FUNCTION dof_id_type	numKokkosBlockSides () const
KOKKOS_FUNCTION ContiguousElementID	kokkosBlockElementID (Moose::Kokkos::ThreadID tid) const
KOKKOS_FUNCTION ContiguousElementID	kokkosBlockNodeID (Moose::Kokkos::ThreadID tid) const
KOKKOS_FUNCTION auto	kokkosBlockElementSideID (Moose::Kokkos::ThreadID tid) const
bool	hasBoundaryMaterialPropertyHelper (const std::string &prop_name) const
KOKKOS_FUNCTION dof_id_type	numKokkosBoundaryNodes () const
KOKKOS_FUNCTION dof_id_type	numKokkosBoundarySides () const
KOKKOS_FUNCTION ContiguousNodeID	kokkosBoundaryNodeID (Moose::Kokkos::ThreadID tid) const
KOKKOS_FUNCTION auto	kokkosBoundaryElementSideID (Moose::Kokkos::ThreadID tid) const
virtual void	coupledCallback (const std::string &, bool) const
virtual bool	isCoupled (const std::string &var_name, unsigned int i=0) const
virtual bool	isCoupledConstant (const std::string &var_name) const
unsigned int	coupledComponents (const std::string &var_name) const
VariableName	coupledName (const std::string &var_name, unsigned int comp=0) const
std::vector< VariableName >	coupledNames (const std::string &var_name) const
virtual unsigned int	coupled (const std::string &var_name, unsigned int comp=0) const
std::vector< unsigned int >	coupledIndices (const std::string &var_name) const
virtual const VariableValue &	coupledValue (const std::string &var_name, unsigned int comp=0) const
std::vector< const VariableValue * >	coupledValues (const std::string &var_name) const
std::vector< const VectorVariableValue * >	coupledVectorValues (const std::string &var_name) const
const GenericVariableValue< is_ad > &	coupledGenericValue (const std::string &var_name, unsigned int comp=0) const
const GenericVariableValue< false > &	coupledGenericValue (const std::string &var_name, unsigned int comp) const
const GenericVariableValue< true > &	coupledGenericValue (const std::string &var_name, unsigned int comp) const
const GenericVectorVariableValue< is_ad > &	coupledGenericVectorValue (const std::string &var_name, unsigned int comp=0) const
const GenericVectorVariableValue< false > &	coupledGenericVectorValue (const std::string &var_name, unsigned int comp) const
const GenericVectorVariableValue< true > &	coupledGenericVectorValue (const std::string &var_name, unsigned int comp) const
std::vector< const GenericVariableValue< is_ad > * >	coupledGenericValues (const std::string &var_name) const
std::vector< const GenericVariableValue< false > * >	coupledGenericValues (const std::string &var_name) const
std::vector< const GenericVariableValue< true > * >	coupledGenericValues (const std::string &var_name) const
const GenericVariableValue< is_ad > &	coupledGenericDofValue (const std::string &var_name, unsigned int comp=0) const
const GenericVariableValue< false > &	coupledGenericDofValue (const std::string &var_name, unsigned int comp) const
const GenericVariableValue< true > &	coupledGenericDofValue (const std::string &var_name, unsigned int comp) const
const GenericVariableValue< is_ad > &	coupledGenericDot (const std::string &var_name, unsigned int comp=0) const
const GenericVariableValue< false > &	coupledGenericDot (const std::string &var_name, unsigned int comp) const
const GenericVariableValue< true > &	coupledGenericDot (const std::string &var_name, unsigned int comp) const
const GenericVariableValue< is_ad > &	coupledGenericDotDot (const std::string &var_name, unsigned int comp=0) const
const GenericVariableValue< false > &	coupledGenericDotDot (const std::string &var_name, unsigned int comp) const
const GenericVariableValue< true > &	coupledGenericDotDot (const std::string &var_name, unsigned int comp) const
virtual const VariableValue &	coupledValueLower (const std::string &var_name, unsigned int comp=0) const
const ADVariableValue &	adCoupledValue (const std::string &var_name, unsigned int comp=0) const
std::vector< const ADVariableValue * >	adCoupledValues (const std::string &var_name) const
const ADVariableValue &	adCoupledLowerValue (const std::string &var_name, unsigned int comp=0) const
const ADVectorVariableValue &	adCoupledVectorValue (const std::string &var_name, unsigned int comp=0) const
std::vector< const ADVectorVariableValue * >	adCoupledVectorValues (const std::string &var_name) const
virtual const VariableValue &	coupledVectorTagValue (const std::string &var_names, TagID tag, unsigned int index=0) const
virtual const VariableValue &	coupledVectorTagValue (const std::string &var_names, const std::string &tag_name, unsigned int index=0) const
std::vector< const VariableValue * >	coupledVectorTagValues (const std::string &var_names, TagID tag) const
std::vector< const VariableValue * >	coupledVectorTagValues (const std::string &var_names, const std::string &tag_name) const
virtual const ArrayVariableValue &	coupledVectorTagArrayValue (const std::string &var_names, TagID tag, unsigned int index=0) const
virtual const ArrayVariableValue &	coupledVectorTagArrayValue (const std::string &var_names, const std::string &tag_name, unsigned int index=0) const
std::vector< const ArrayVariableValue * >	coupledVectorTagArrayValues (const std::string &var_names, TagID tag) const
std::vector< const ArrayVariableValue * >	coupledVectorTagArrayValues (const std::string &var_names, const std::string &tag_name) const
virtual const VariableGradient &	coupledVectorTagGradient (const std::string &var_names, TagID tag, unsigned int index=0) const
virtual const VariableGradient &	coupledVectorTagGradient (const std::string &var_names, const std::string &tag_name, unsigned int index=0) const
std::vector< const VariableGradient * >	coupledVectorTagGradients (const std::string &var_names, TagID tag) const
std::vector< const VariableGradient * >	coupledVectorTagGradients (const std::string &var_names, const std::string &tag_name) const
virtual const ArrayVariableGradient &	coupledVectorTagArrayGradient (const std::string &var_names, TagID tag, unsigned int index=0) const
virtual const ArrayVariableGradient &	coupledVectorTagArrayGradient (const std::string &var_names, const std::string &tag_name, unsigned int index=0) const
std::vector< const ArrayVariableGradient * >	coupledVectorTagArrayGradients (const std::string &var_names, TagID tag) const
std::vector< const ArrayVariableGradient * >	coupledVectorTagArrayGradients (const std::string &var_names, const std::string &tag_name) const
virtual const VariableValue &	coupledVectorTagDofValue (const std::string &var_name, TagID tag, unsigned int index=0) const
virtual const VariableValue &	coupledVectorTagDofValue (const std::string &var_names, const std::string &tag_name, unsigned int index=0) const
const ArrayVariableValue &	coupledVectorTagArrayDofValue (const std::string &var_name, const std::string &tag_name, unsigned int comp=0) const
std::vector< const VariableValue * >	coupledVectorTagDofValues (const std::string &var_names, TagID tag) const
std::vector< const VariableValue * >	coupledVectorTagDofValues (const std::string &var_names, const std::string &tag_name) const
virtual const VariableValue &	coupledMatrixTagValue (const std::string &var_names, TagID tag, unsigned int index=0) const
virtual const VariableValue &	coupledMatrixTagValue (const std::string &var_names, const std::string &tag_name, unsigned int index=0) const
std::vector< const VariableValue * >	coupledMatrixTagValues (const std::string &var_names, TagID tag) const
std::vector< const VariableValue * >	coupledMatrixTagValues (const std::string &var_names, const std::string &tag_name) const
virtual const VectorVariableValue &	coupledVectorValue (const std::string &var_name, unsigned int comp=0) const
virtual const ArrayVariableValue &	coupledArrayValue (const std::string &var_name, unsigned int comp=0) const
std::vector< const ArrayVariableValue * >	coupledArrayValues (const std::string &var_name) const
MooseWritableVariable &	writableVariable (const std::string &var_name, unsigned int comp=0)
virtual VariableValue &	writableCoupledValue (const std::string &var_name, unsigned int comp=0)
void	checkWritableVar (MooseWritableVariable *var)
virtual const VariableValue &	coupledValueOld (const std::string &var_name, unsigned int comp=0) const
std::vector< const VariableValue * >	coupledValuesOld (const std::string &var_name) const
std::vector< const VectorVariableValue * >	coupledVectorValuesOld (const std::string &var_name) const
virtual const VariableValue &	coupledValueOlder (const std::string &var_name, unsigned int comp=0) const
std::vector< const VariableValue * >	coupledValuesOlder (const std::string &var_name) const
virtual const VariableValue &	coupledValuePreviousNL (const std::string &var_name, unsigned int comp=0) const
virtual const VectorVariableValue &	coupledVectorValueOld (const std::string &var_name, unsigned int comp=0) const
virtual const VectorVariableValue &	coupledVectorValueOlder (const std::string &var_name, unsigned int comp=0) const
virtual const ArrayVariableValue &	coupledArrayValueOld (const std::string &var_name, unsigned int comp=0) const
virtual const ArrayVariableValue &	coupledArrayValueOlder (const std::string &var_name, unsigned int comp=0) const
virtual const VariableGradient &	coupledGradient (const std::string &var_name, unsigned int comp=0) const
std::vector< const VariableGradient * >	coupledGradients (const std::string &var_name) const
const ADVariableGradient &	adCoupledGradient (const std::string &var_name, unsigned int comp=0) const
const ADVariableGradient &	adCoupledGradientDot (const std::string &var_name, unsigned int comp=0) const
std::vector< const ADVariableGradient * >	adCoupledGradients (const std::string &var_name) const
const GenericVariableGradient< is_ad > &	coupledGenericGradient (const std::string &var_name, unsigned int comp=0) const
const GenericVariableGradient< false > &	coupledGenericGradient (const std::string &var_name, unsigned int comp) const
const GenericVariableGradient< true > &	coupledGenericGradient (const std::string &var_name, unsigned int comp) const
std::vector< const GenericVariableGradient< is_ad > * >	coupledGenericGradients (const std::string &var_name) const
std::vector< const GenericVariableGradient< false > * >	coupledGenericGradients (const std::string &var_name) const
std::vector< const GenericVariableGradient< true > * >	coupledGenericGradients (const std::string &var_name) const
const ADVectorVariableGradient &	adCoupledVectorGradient (const std::string &var_name, unsigned int comp=0) const
const ADVariableSecond &	adCoupledSecond (const std::string &var_name, unsigned int comp=0) const
const ADVectorVariableSecond &	adCoupledVectorSecond (const std::string &var_name, unsigned int comp=0) const
virtual const VariableGradient &	coupledGradientOld (const std::string &var_name, unsigned int comp=0) const
std::vector< const VariableGradient * >	coupledGradientsOld (const std::string &var_name) const
virtual const VariableGradient &	coupledGradientOlder (const std::string &var_name, unsigned int comp=0) const
virtual const VariableGradient &	coupledGradientPreviousNL (const std::string &var_name, unsigned int comp=0) const
virtual const VariableGradient &	coupledGradientDot (const std::string &var_name, unsigned int comp=0) const
virtual const VariableGradient &	coupledGradientDotDot (const std::string &var_name, unsigned int comp=0) const
virtual const VectorVariableGradient &	coupledVectorGradient (const std::string &var_name, unsigned int comp=0) const
virtual const VectorVariableGradient &	coupledVectorGradientOld (const std::string &var_name, unsigned int comp=0) const
virtual const VectorVariableGradient &	coupledVectorGradientOlder (const std::string &var_name, unsigned int comp=0) const
virtual const ArrayVariableGradient &	coupledArrayGradient (const std::string &var_name, unsigned int comp=0) const
virtual const ArrayVariableGradient &	coupledArrayGradientOld (const std::string &var_name, unsigned int comp=0) const
virtual const ArrayVariableGradient &	coupledArrayGradientOlder (const std::string &var_name, unsigned int comp=0) const
virtual const ArrayVariableGradient &	coupledArrayGradientDot (const std::string &var_name, unsigned int comp=0) const
virtual const VectorVariableCurl &	coupledCurl (const std::string &var_name, unsigned int comp=0) const
virtual const VectorVariableCurl &	coupledCurlOld (const std::string &var_name, unsigned int comp=0) const
virtual const VectorVariableCurl &	coupledCurlOlder (const std::string &var_name, unsigned int comp=0) const
const ADVectorVariableCurl &	adCoupledCurl (const std::string &var_name, unsigned int comp=0) const
virtual const VectorVariableDivergence &	coupledDiv (const std::string &var_name, unsigned int comp=0) const
virtual const VectorVariableDivergence &	coupledDivOld (const std::string &var_name, unsigned int comp=0) const
virtual const VectorVariableDivergence &	coupledDivOlder (const std::string &var_name, unsigned int comp=0) const
virtual const VariableSecond &	coupledSecond (const std::string &var_name, unsigned int comp=0) const
virtual const VariableSecond &	coupledSecondOld (const std::string &var_name, unsigned int comp=0) const
virtual const VariableSecond &	coupledSecondOlder (const std::string &var_name, unsigned int comp=0) const
virtual const VariableSecond &	coupledSecondPreviousNL (const std::string &var_name, unsigned int comp=0) const
virtual const VariableValue &	coupledDot (const std::string &var_name, unsigned int comp=0) const
std::vector< const VariableValue * >	coupledDots (const std::string &var_name) const
virtual const VariableValue &	coupledDotDot (const std::string &var_name, unsigned int comp=0) const
virtual const VariableValue &	coupledDotOld (const std::string &var_name, unsigned int comp=0) const
virtual const VariableValue &	coupledDotDotOld (const std::string &var_name, unsigned int comp=0) const
const ADVariableValue &	adCoupledDot (const std::string &var_name, unsigned int comp=0) const
std::vector< const ADVariableValue * >	adCoupledDots (const std::string &var_name) const
const ADVariableValue &	adCoupledDotDot (const std::string &var_name, unsigned int comp=0) const
const ADVectorVariableValue &	adCoupledVectorDot (const std::string &var_name, unsigned int comp=0) const
virtual const VectorVariableValue &	coupledVectorDot (const std::string &var_name, unsigned int comp=0) const
virtual const VectorVariableValue &	coupledVectorDotDot (const std::string &var_name, unsigned int comp=0) const
virtual const VectorVariableValue &	coupledVectorDotOld (const std::string &var_name, unsigned int comp=0) const
virtual const VectorVariableValue &	coupledVectorDotDotOld (const std::string &var_name, unsigned int comp=0) const
virtual const VariableValue &	coupledVectorDotDu (const std::string &var_name, unsigned int comp=0) const
virtual const VariableValue &	coupledVectorDotDotDu (const std::string &var_name, unsigned int comp=0) const
virtual const ArrayVariableValue &	coupledArrayDot (const std::string &var_name, unsigned int comp=0) const
virtual const ArrayVariableValue &	coupledArrayDotDot (const std::string &var_name, unsigned int comp=0) const
virtual const ArrayVariableValue &	coupledArrayDotOld (const std::string &var_name, unsigned int comp=0) const
virtual const ArrayVariableValue &	coupledArrayDotDotOld (const std::string &var_name, unsigned int comp=0) const
virtual const VariableValue &	coupledDotDu (const std::string &var_name, unsigned int comp=0) const
virtual const VariableValue &	coupledDotDotDu (const std::string &var_name, unsigned int comp=0) const
const VariableValue &	coupledArrayDotDu (const std::string &var_name, unsigned int comp=0) const
const T &	coupledNodalValue (const std::string &var_name, unsigned int comp=0) const
const Moose::ADType< T >::type &	adCoupledNodalValue (const std::string &var_name, unsigned int comp=0) const
const T &	coupledNodalValueOld (const std::string &var_name, unsigned int comp=0) const
const T &	coupledNodalValueOlder (const std::string &var_name, unsigned int comp=0) const
const T &	coupledNodalValuePreviousNL (const std::string &var_name, unsigned int comp=0) const
const T &	coupledNodalDot (const std::string &var_name, unsigned int comp=0) const
virtual const VariableValue &	coupledNodalDotDot (const std::string &var_name, unsigned int comp=0) const
virtual const VariableValue &	coupledNodalDotOld (const std::string &var_name, unsigned int comp=0) const
virtual const VariableValue &	coupledNodalDotDotOld (const std::string &var_name, unsigned int comp=0) const
virtual const VariableValue &	coupledDofValues (const std::string &var_name, unsigned int comp=0) const
std::vector< const VariableValue * >	coupledAllDofValues (const std::string &var_name) const
virtual const VariableValue &	coupledDofValuesOld (const std::string &var_name, unsigned int comp=0) const
std::vector< const VariableValue * >	coupledAllDofValuesOld (const std::string &var_name) const
virtual const VariableValue &	coupledDofValuesOlder (const std::string &var_name, unsigned int comp=0) const
std::vector< const VariableValue * >	coupledAllDofValuesOlder (const std::string &var_name) const
virtual const ArrayVariableValue &	coupledArrayDofValues (const std::string &var_name, unsigned int comp=0) const
virtual const ADVariableValue &	adCoupledDofValues (const std::string &var_name, unsigned int comp=0) const
const ADVariableValue &	adZeroValue () const
const ADVariableGradient &	adZeroGradient () const
const ADVariableSecond &	adZeroSecond () const
const GenericVariableValue< is_ad > &	genericZeroValue ()
const GenericVariableValue< false > &	genericZeroValue ()
const GenericVariableValue< true > &	genericZeroValue ()
const GenericVariableGradient< is_ad > &	genericZeroGradient ()
const GenericVariableGradient< false > &	genericZeroGradient ()
const GenericVariableGradient< true > &	genericZeroGradient ()
const GenericVariableSecond< is_ad > &	genericZeroSecond ()
const GenericVariableSecond< false > &	genericZeroSecond ()
const GenericVariableSecond< true > &	genericZeroSecond ()
bool	checkVar (const std::string &var_name, unsigned int comp=0, unsigned int comp_bound=0) const
const MooseVariableFieldBase *	getFEVar (const std::string &var_name, unsigned int comp) const
const MooseVariableFieldBase *	getFieldVar (const std::string &var_name, unsigned int comp) const
MooseVariableFieldBase *	getFieldVar (const std::string &var_name, unsigned int comp)
std::vector< const MooseVariableFieldBase * >	getFieldVars (const std::string &var_name) const
const T *	getVarHelper (const std::string &var_name, unsigned int comp) const
T *	getVarHelper (const std::string &var_name, unsigned int comp)
std::vector< const T * >	getVarsHelper (const std::string &var_name) const
MooseVariable *	getVar (const std::string &var_name, unsigned int comp)
const MooseVariable *	getVar (const std::string &var_name, unsigned int comp) const
VectorMooseVariable *	getVectorVar (const std::string &var_name, unsigned int comp)
const VectorMooseVariable *	getVectorVar (const std::string &var_name, unsigned int comp) const
ArrayMooseVariable *	getArrayVar (const std::string &var_name, unsigned int comp)
const ArrayMooseVariable *	getArrayVar (const std::string &var_name, unsigned int comp) const
void	validateExecutionerType (const std::string &name, const std::string &fn_name) const
std::vector< T >	coupledVectorHelper (const std::string &var_name, const Func &func) const
bool	isCoupledScalar (const std::string &var_name, unsigned int i=0) const
unsigned int	coupledScalarComponents (const std::string &var_name) const
unsigned int	coupledScalar (const std::string &var_name, unsigned int comp=0) const
libMesh::Order	coupledScalarOrder (const std::string &var_name, unsigned int comp=0) const
const VariableValue &	coupledScalarValue (const std::string &var_name, unsigned int comp=0) const
const ADVariableValue &	adCoupledScalarValue (const std::string &var_name, unsigned int comp=0) const
const GenericVariableValue< is_ad > &	coupledGenericScalarValue (const std::string &var_name, unsigned int comp=0) const
const GenericVariableValue< false > &	coupledGenericScalarValue (const std::string &var_name, const unsigned int comp) const
const GenericVariableValue< true > &	coupledGenericScalarValue (const std::string &var_name, const unsigned int comp) const
const VariableValue &	coupledVectorTagScalarValue (const std::string &var_name, TagID tag, unsigned int comp=0) const
const VariableValue &	coupledMatrixTagScalarValue (const std::string &var_name, TagID tag, unsigned int comp=0) const
const VariableValue &	coupledScalarValueOld (const std::string &var_name, unsigned int comp=0) const
const VariableValue &	coupledScalarValueOlder (const std::string &var_name, unsigned int comp=0) const
const VariableValue &	coupledScalarDot (const std::string &var_name, unsigned int comp=0) const
const ADVariableValue &	adCoupledScalarDot (const std::string &var_name, unsigned int comp=0) const
const VariableValue &	coupledScalarDotDot (const std::string &var_name, unsigned int comp=0) const
const VariableValue &	coupledScalarDotOld (const std::string &var_name, unsigned int comp=0) const
const VariableValue &	coupledScalarDotDotOld (const std::string &var_name, unsigned int comp=0) const
const VariableValue &	coupledScalarDotDu (const std::string &var_name, unsigned int comp=0) const
const VariableValue &	coupledScalarDotDotDu (const std::string &var_name, unsigned int comp=0) const
const MooseVariableScalar *	getScalarVar (const std::string &var_name, unsigned int comp) const
const T &	getReporterValue (const std::string &param_name, const std::size_t time_index=0)
const T &	getReporterValue (const std::string &param_name, ReporterMode mode, const std::size_t time_index=0)
const T &	getReporterValue (const std::string &param_name, const std::size_t time_index=0)
const T &	getReporterValue (const std::string &param_name, ReporterMode mode, const std::size_t time_index=0)
const T &	getReporterValueByName (const ReporterName &reporter_name, const std::size_t time_index=0)
const T &	getReporterValueByName (const ReporterName &reporter_name, ReporterMode mode, const std::size_t time_index=0)
const T &	getReporterValueByName (const ReporterName &reporter_name, const std::size_t time_index=0)
const T &	getReporterValueByName (const ReporterName &reporter_name, ReporterMode mode, const std::size_t time_index=0)
bool	hasReporterValue (const std::string &param_name) const
bool	hasReporterValue (const std::string &param_name) const
bool	hasReporterValue (const std::string &param_name) const
bool	hasReporterValue (const std::string &param_name) const
bool	hasReporterValueByName (const ReporterName &reporter_name) const
bool	hasReporterValueByName (const ReporterName &reporter_name) const
bool	hasReporterValueByName (const ReporterName &reporter_name) const
bool	hasReporterValueByName (const ReporterName &reporter_name) const

Static Protected Member Functions
static std::string	meshPropertyName (const std::string &data_name, const std::string &prefix)

Protected Attributes
const Real	_temperature
GeochemicalSystem	_egs
	The equilibrium geochemical system that holds all the molalities, activities, etc.
GeochemicalSolver	_solver
	The solver.
DenseVector< Real >	_mole_additions
	mole additions: these are always zero but are used in getMoleAdditions and the solve
const unsigned	_num_my_nodes
	Number of nodes handled by this processor (will need to be made un-const when mesh adaptivity is handled)
ModelGeochemicalDatabase	_mgd
	my copy of the underlying ModelGeochemicalDatabase
const PertinentGeochemicalSystem &	_pgs
	Reference to the original PertinentGeochemicalSystem used to create the ModelGeochemicalDatabase.
const unsigned	_num_basis
	number of basis species
const unsigned	_num_eqm
	number of equilibrium species
const Real	_initial_max_ionic_str
	Initial value of maximum ionic strength.
GeochemistryIonicStrength	_is
	The ionic strength calculator.
GeochemistryActivityCoefficientsDebyeHuckel	_gac
	The activity calculator.
const unsigned	_max_swaps_allowed
	Maximum number of swaps allowed during a single solve.
GeochemistrySpeciesSwapper	_swapper
	The species swapper.
const Real	_small_molality
	A small value of molality.
std::vector< std::stringstream >	_solver_output
	The solver output at each node.
std::vector< unsigned >	_tot_iter
	Number of iterations used by the solver at each node.
std::vector< Real >	_abs_residual
	L1norm of the solver residual at each node.
MooseMesh &	_mesh
const unsigned int	_qp
const Node *const &	_current_node
const bool &	_unique_node_execute
const Moose::CoordinateSystemType &	_coord_sys
const THREAD_ID	_tid
SubProblem &	_subproblem
FEProblemBase &	_fe_problem
SystemBase &	_sys
Assembly &	_assembly
const bool	_duplicate_initial_execution
std::set< std::string >	_depend_uo
const bool &	_enabled
MooseApp &	_app
Factory &	_factory
ActionFactory &	_action_factory
const std::string &	_type
const std::string &	_name
const InputParameters &	_pars
const ExecFlagEnum &	_execute_enum
const ExecFlagType &	_current_execute_flag
MooseApp &	_restartable_app
const std::string	_restartable_system_name
const THREAD_ID	_restartable_tid
const bool	_restartable_read_only
FEProblemBase &	_mci_feproblem
FEProblemBase &	_mdi_feproblem
MooseApp &	_pg_moose_app
const std::string	_prefix
const MaterialData *	_blk_material_data
const InputParameters &	_c_parameters
const std::string &	_c_name
const std::string &	_c_type
FEProblemBase &	_c_fe_problem
const SystemBase *const	_c_sys
std::unordered_map< std::string, std::vector< MooseVariableFieldBase * > >	_coupled_vars
std::vector< MooseVariableFieldBase * >	_coupled_moose_vars
std::vector< MooseVariable * >	_coupled_standard_moose_vars
std::vector< VectorMooseVariable * >	_coupled_vector_moose_vars
std::vector< ArrayMooseVariable * >	_coupled_array_moose_vars
std::vector< MooseVariableField< Real > * >	_coupled_fv_moose_vars
const std::unordered_map< std::string, std::string > &	_new_to_deprecated_coupled_vars
bool	_c_nodal
bool	_c_is_implicit
const bool	_c_allow_element_to_nodal_coupling
THREAD_ID	_c_tid
std::unordered_map< std::string, std::vector< std::unique_ptr< VariableValue > > >	_default_value
std::unordered_map< std::string, std::unique_ptr< MooseArray< ADReal > > >	_ad_default_value
std::unordered_map< std::string, std::unique_ptr< VectorVariableValue > >	_default_vector_value
std::unordered_map< std::string, std::unique_ptr< ArrayVariableValue > >	_default_array_value
std::unordered_map< std::string, std::unique_ptr< MooseArray< ADRealVectorValue > > >	_ad_default_vector_value
VariableValue	_default_value_zero
VariableGradient	_default_gradient
MooseArray< ADRealVectorValue >	_ad_default_gradient
MooseArray< ADRealTensorValue >	_ad_default_vector_gradient
VariableSecond	_default_second
MooseArray< ADRealTensorValue >	_ad_default_second
MooseArray< ADRealVectorValue >	_ad_default_curl
const VariableValue &	_zero
const VariablePhiValue &	_phi_zero
const MooseArray< ADReal > &	_ad_zero
const VariableGradient &	_grad_zero
const MooseArray< ADRealVectorValue > &	_ad_grad_zero
const VariablePhiGradient &	_grad_phi_zero
const VariableSecond &	_second_zero
const MooseArray< ADRealTensorValue > &	_ad_second_zero
const VariablePhiSecond &	_second_phi_zero
const VectorVariableValue &	_vector_zero
const VectorVariableCurl &	_vector_curl_zero
VectorVariableValue	_default_vector_value_zero
VectorVariableGradient	_default_vector_gradient
VectorVariableCurl	_default_vector_curl
VectorVariableDivergence	_default_div
ArrayVariableValue	_default_array_value_zero
ArrayVariableGradient	_default_array_gradient
bool	_coupleable_neighbor
FEProblemBase &	_sc_fe_problem
const THREAD_ID	_sc_tid
const Real &	_real_zero
const VariableValue &	_scalar_zero
const Point &	_point_zero
const InputParameters &	_ti_params
FEProblemBase &	_ti_feproblem
bool	_is_implicit
Real &	_t
const Real &	_t_old
int &	_t_step
Real &	_dt
Real &	_dt_old
bool	_is_transient
const Parallel::Communicator &	_communicator

Private Types
enum	FuncAge
enum	VarType

Private Member Functions
const Moose::FunctionBase *	getKokkosFunctionByNameHelper (const FunctionName &name) const
const UserObjectBase &	getUserObjectFromFEProblem (const UserObjectName &object_name, const THREAD_ID tid=0) const
const T &	castUserObject (const UserObjectBase &uo_base, const std::string &param_name="") const
void	mooseObjectError (const std::string &param_name, std::stringstream &oss) const
const std::string &	userObjectType (const UserObjectBase &uo) const
const std::string &	userObjectName (const UserObjectBase &uo) const
const PostprocessorName &	getPostprocessorNameInternal (const std::string &param_name, const unsigned int index, const bool allow_default_value=true) const
bool	isDefaultPostprocessorValueByName (const PostprocessorName &name) const
PostprocessorValue	getDefaultPostprocessorValueByName (const PostprocessorName &name) const
void	checkParam (const std::string &param_name, const unsigned int index=std::numeric_limits< unsigned int >::max()) const
bool	postprocessorsAdded () const
const VectorPostprocessorValue &	getVectorPostprocessorByNameHelper (const VectorPostprocessorName &name, const std::string &vector_name, bool broadcast, std::size_t t_index) const
const VectorPostprocessorContext< VectorPostprocessorValue > &	getVectorPostprocessorContextByNameHelper (const VectorPostprocessorName &name, const std::string &vector_name) const
bool	vectorPostprocessorsAdded () const
bool	reportersAdded () const
void	possiblyCheckHasReporter (const ReporterName &reporter_name, const std::string &param_name="") const
RestartableDataValue &	registerRestartableDataOnApp (std::unique_ptr< RestartableDataValue > data, THREAD_ID tid) const
void	registerRestartableNameWithFilterOnApp (const std::string &name, Moose::RESTARTABLE_FILTER filter)
RestartableData< T > &	declareRestartableDataHelper (const std::string &data_name, void *context, Args &&... args) const
virtual std::string	meshPropertyPrefix (const std::string &data_name) const
const RestartableDataValue &	getMeshPropertyInternal (const std::string &data_name, const std::string &prefix) const
void	mooseErrorInternal (Args &&... args) const
void	initializeBoundaryRestrictable ()
void	initializeKokkosBoundaryRestrictable ()
const OutputTools< T >::VariableValue &	vectorTagValueHelper (const std::string &var_names, TagID tag, unsigned int index=0) const
const OutputTools< T >::VariableValue &	vectorTagValueHelper (const std::string &var_names, const std::string &tag_name, unsigned int index=0) const
const OutputTools< T >::VariableValue &	vectorTagDofValueHelper (const std::string &var_name, TagID tag, unsigned int comp=0) const
const OutputTools< T >::VariableValue &	vectorTagDofValueHelper (const std::string &var_name, const std::string &tag_name, unsigned int comp=0) const
void	requestStates (const std::string &var_name, const TagName &tag_name, const unsigned int comp)
void	checkFuncType (const std::string var_name, VarType t, FuncAge age) const
const VariableValue *	getDefaultValue (const std::string &var_name, unsigned int comp) const
const VectorVariableValue *	getDefaultVectorValue (const std::string &var_name) const
const ArrayVariableValue *	getDefaultArrayValue (const std::string &var_name) const
const T &	getDefaultNodalValue (const std::string &var_name, unsigned int comp=0) const
const RealVectorValue &	getDefaultNodalValue (const std::string &var_name, unsigned int) const
const RealEigenVector &	getDefaultNodalValue (const std::string &var_name, unsigned int) const
const Moose::Functor< T > &	getDefaultFunctor (const std::string &var_name) const
Moose::Kokkos::Variable	kokkosCoupledVectorTagVariable (const std::string &var_name, const std::string &tag_name, unsigned int comp) const
Moose::Kokkos::Variable	kokkosCoupledVectorTagVariables (const std::string &var_name, const std::string &tag_name) const
Moose::Kokkos::Variable	kokkosCoupledVectorTagVectorVariable (const std::string &var_name, const std::string &tag_name, unsigned int comp) const
Moose::Kokkos::Variable	kokkosCoupledVectorTagVectorVariables (const std::string &var_name, const std::string &tag_name) const
Moose::Kokkos::Variable	kokkosZeroVariable () const
std::set< MooseVariableFieldBase * >	checkVariablesHelper (const DofObjectType &dof_object, const std::set< MooseVariableFieldBase * > &vars_to_check)
const PostprocessorValue &	getPostprocessorValueInternal (const std::string &param_name, unsigned int index, std::size_t t_index) const
const PostprocessorValue &	getPostprocessorValueInternal (const std::string &param_name, unsigned int index, std::size_t t_index) const
const PostprocessorValue &	getPostprocessorValueByNameInternal (const PostprocessorName &name, std::size_t t_index) const
const PostprocessorValue &	getPostprocessorValueByNameInternal (const PostprocessorName &name, std::size_t t_index) const
void	possiblyCheckHasVectorPostprocessor (const std::string &param_name, const std::string &vector_name) const
void	possiblyCheckHasVectorPostprocessor (const std::string &param_name, const std::string &vector_name) const
void	possiblyCheckHasVectorPostprocessorByName (const VectorPostprocessorName &name, const std::string &vector_name) const
void	possiblyCheckHasVectorPostprocessorByName (const VectorPostprocessorName &name, const std::string &vector_name) const

Static Private Member Functions
static const hit::Node *	getHitNode (const InputParameters &params)
static std::string	messagePrefix (const InputParameters &params, const bool hit_prefix)

Private Attributes
UserObject *	_primary_thread_copy
std::set< std::string >	_supplied_uo
const ParallelParamObject &	_parent
const MooseBase &	_si_moose_base
const FEProblemBase *	_si_problem
ExecFlagEnum	_empty_execute_enum
const MooseObject &	_fni_object
const InputParameters &	_fni_params
FEProblemBase &	_fni_feproblem
const THREAD_ID	_fni_tid
const MooseObject &	_uoi_moose_object
const FEProblemBase &	_uoi_feproblem
const THREAD_ID	_uoi_tid
const MooseObject &	_ppi_moose_object
const InputParameters &	_ppi_params
const FEProblemBase &	_ppi_feproblem
std::map< PostprocessorName, std::unique_ptr< PostprocessorValue > >	_default_values
const bool	_broadcast_by_default
const MooseObject &	_vpi_moose_object
const FEProblemBase &	_vpi_feproblem
const THREAD_ID	_vpi_tid
const InputParameters &	_ri_params
FEProblemBase &	_ri_fe_problem_base
const ReporterData &	_ri_reporter_data
const MooseObject &	_ri_moose_object
const InputParameters &	_dni_params
FEProblemBase &	_dni_feproblem
const MooseObject *const	_dni_moose_object_ptr
const InputParameters &	_si_params
FEProblemBase &	_si_feproblem
THREAD_ID	_si_tid
const RestartableDataMapName	_metaname
std::string	_restartable_name
MooseApp &	_meta_data_app
const MooseObject *const	_meta_data_object
std::set< SubdomainID >	_blk_ids
std::vector< SubdomainID >	_vec_ids
std::vector< SubdomainName >	_blocks
const bool	_blk_dual_restrictable
FEProblemBase *	_blk_feproblem
const MooseMesh *	_blk_mesh
const std::set< BoundaryID >	_empty_boundary_ids
const std::set< BoundaryID > &	_boundary_ids
THREAD_ID	_blk_tid
const std::string &	_blk_name
unsigned int	_blk_dim
const MooseObject *	_moose_object
Moose::Kokkos::Array< ContiguousElementID >	_kokkos_element_ids
Moose::Kokkos::Array< ContiguousNodeID >	_kokkos_node_ids
Moose::Kokkos::Array< Moose::Kokkos::Pair< ContiguousElementID, unsigned int > >	_kokkos_element_side_ids
FEProblemBase *	_bnd_feproblem
MooseMesh *	_bnd_mesh
std::set< BoundaryID >	_bnd_ids
std::vector< BoundaryName >	_boundary_names
const bool	_bnd_dual_restrictable
const std::set< SubdomainID >	_empty_block_ids
const std::set< SubdomainID > &	_block_ids
THREAD_ID	_bnd_tid
const MaterialData &	_bnd_material_data
bool	_bnd_nodal
unsigned int	_coupleable_max_qps
std::unordered_map< std::string, std::vector< unsigned int > >	_optional_var_index
std::unordered_map< std::string, std::vector< MooseVariableScalar * > >	_c_coupled_scalar_vars
std::set< TagID >	_fe_coupleable_vector_tags
std::set< TagID >	_fe_coupleable_matrix_tags
const bool	_is_fv
const MooseObject *const	_obj
const std::set< std::string >	_older_state_tags
std::vector< std::set< MooseWritableVariable * > >	_writable_coupled_variables
const Real	_kokkos_default_value_zero
const InputParameters &	_sc_parameters
const std::string &	_sc_name
const bool	_sc_is_implicit
std::unordered_map< std::string, std::vector< MooseVariableScalar * > >	_coupled_scalar_vars
std::unordered_map< std::string, std::unique_ptr< ADVariableValue > >	_dual_default_value
std::vector< MooseVariableScalar * >	_coupled_moose_scalar_vars
std::unordered_map< std::string, std::vector< MooseVariableFieldBase * > >	_sc_coupled_vars
std::set< TagID >	_sc_coupleable_vector_tags
std::set< TagID >	_sc_coupleable_matrix_tags
std::set< MooseVariableFieldBase * >	_moose_variable_dependencies
std::vector< libMesh::dof_id_type >	_dof_indices
const std::string	_ti_name
RandomData *	_random_data
MooseRandom *	_generator
FEProblemBase &	_ri_problem
const std::string	_ri_name
unsigned int	_master_seed
bool	_is_nodal
ExecFlagType	_reset_on
const Node *const &	_curr_node
const Elem *const &	_curr_element

Detailed Description

Class that controls the time independent (and spatially independent) geochemistry reactions.

Definition at line 18 of file GeochemistryTimeIndependentReactor.h.

Constructor & Destructor Documentation

GeochemistryTimeIndependentReactor()

GeochemistryTimeIndependentReactor::GeochemistryTimeIndependentReactor

(

const InputParameters &

parameters

)

Definition at line 25 of file GeochemistryTimeIndependentReactor.C.

  : GeochemistryReactorBase(parameters),
    _temperature(getParam<Real>("temperature")),
    _egs(_mgd,
         _gac,
         _is,
         _swapper,
         getParam<std::vector<std::string>>("swap_out_of_basis"),
         getParam<std::vector<std::string>>("swap_into_basis"),
         getParam<std::string>("charge_balance_species"),
         getParam<std::vector<std::string>>("constraint_species"),
         getParam<std::vector<Real>>("constraint_value"),
         getParam<MultiMooseEnum>("constraint_unit"),
         getParam<MultiMooseEnum>("constraint_meaning"),
         _temperature,
         getParam<unsigned>("extra_iterations_to_make_consistent"),
         getParam<Real>("min_initial_molality"),
         {},
         {},
         MultiMooseEnum("")),
    _solver(_mgd.basis_species_name.size(),
            _mgd.kin_species_name.size(),
            _is,
            getParam<Real>("abs_tol"),
            getParam<Real>("rel_tol"),
            getParam<unsigned>("max_iter"),
            getParam<Real>("max_initial_residual"),
            _small_molality,
            _max_swaps_allowed,
            getParam<std::vector<std::string>>("prevent_precipitation"),
            getParam<Real>("max_ionic_strength"),
            getParam<unsigned>("ramp_max_ionic_strength_initial"),
            false),
    _mole_additions(DenseVector<Real>(_num_basis, 0.0))
{
}

Member Function Documentation

execute()

void GeochemistryTimeIndependentReactor::execute ( )

overridevirtual

Reimplemented from GeochemistryReactorBase.

Definition at line 75 of file GeochemistryTimeIndependentReactor.C.

{
  GeochemistryReactorBase::execute();
}

finalize()

void GeochemistryTimeIndependentReactor::finalize ( )

overridevirtual

Reimplemented from GeochemistryReactorBase.

Definition at line 69 of file GeochemistryTimeIndependentReactor.C.

{
  GeochemistryReactorBase::finalize();
}

getGeochemicalSystem()

const GeochemicalSystem & GeochemistryTimeIndependentReactor::getGeochemicalSystem ( dof_id_type  node_id ) const

overridevirtual

Returns

a reference to the equilibrium geochemical system at the given node

Parameters

node_id

the ID of the node

Implements GeochemistryReactorBase.

Definition at line 96 of file GeochemistryTimeIndependentReactor.C.

{
  return _egs;
}

getMoleAdditions()

const DenseVector< Real > & GeochemistryTimeIndependentReactor::getMoleAdditions ( dof_id_type  node_id ) const

overridevirtual

Returns

the mole additions (the first num_basis of these are additions to the bulk composition of the equilibrium system, the last num_kin of these are -dt*kinetic_reaction_rate, ie dt*dissolution_rate) at the specified node_id

Parameters

node_id

the node ID

Implements GeochemistryReactorBase.

Definition at line 120 of file GeochemistryTimeIndependentReactor.C.

{
  return _mole_additions;
}

getMolesDumped()

Real GeochemistryTimeIndependentReactor::getMolesDumped ( dof_id_type  node_id, const std::string &  species  ) const

overridevirtual

Returns

the moles dumped of the given species at the specified node_id

Parameters

species	the name of the species
node_id	the node ID

Implements GeochemistryReactorBase.

Definition at line 126 of file GeochemistryTimeIndependentReactor.C.

{
  return 0.0;
}

getPertinentGeochemicalSystem()

const PertinentGeochemicalSystem & GeochemistryReactorBase::getPertinentGeochemicalSystem ( ) const

inlineinherited

returns a reference to the PertinentGeochemicalSystem used to creat the ModelGeochemicalDatabase

Definition at line 73 of file GeochemistryReactorBase.h.

{ return _pgs; };

Referenced by GeochemistryQuantityAux::computeValue(), GeochemistryQuantityAux::GeochemistryQuantityAux(), and GeochemistryConsoleOutput::output().

getSolverIterations()

unsigned GeochemistryTimeIndependentReactor::getSolverIterations ( dof_id_type  node_id ) const

overridevirtual

Returns

the total number of iterations used by the most recent solve at the specified node_id

Parameters

node_id

the node ID

Implements GeochemistryReactorBase.

Definition at line 108 of file GeochemistryTimeIndependentReactor.C.

{
  return _tot_iter[0];
}

getSolverOutput()

const std::stringstream & GeochemistryTimeIndependentReactor::getSolverOutput ( dof_id_type  node_id ) const

overridevirtual

Returns

a reference to the most recent solver output (containing iteration info, swap info, residuals, etc) at the specified node_id

Parameters

node_id

the node ID

Implements GeochemistryReactorBase.

Definition at line 102 of file GeochemistryTimeIndependentReactor.C.

{
  return _solver_output[0];
}

getSolverResidual()

Real GeochemistryTimeIndependentReactor::getSolverResidual ( dof_id_type  node_id ) const

overridevirtual

Returns

the L1norm of the residual at the end of the most recent solve at the specified node_id

Parameters

node_id

the node ID

Implements GeochemistryReactorBase.

Definition at line 114 of file GeochemistryTimeIndependentReactor.C.

{
  return _abs_residual[0];
}

initialize()

void GeochemistryTimeIndependentReactor::initialize ( )

overridevirtual

Reimplemented from GeochemistryReactorBase.

Definition at line 64 of file GeochemistryTimeIndependentReactor.C.

{
  GeochemistryReactorBase::initialize();
}

initialSetup()

void GeochemistryTimeIndependentReactor::initialSetup ( )

overridevirtual

Reimplemented from NodalUserObject.

Definition at line 81 of file GeochemistryTimeIndependentReactor.C.

{
  if (_num_my_nodes == 0)
    return; // rather peculiar case where user has used many processors
  DenseMatrix<Real> dmole_additions(_num_basis, _num_basis);
  _solver.solveSystem(_egs,
                      _solver_output[0],
                      _tot_iter[0],
                      _abs_residual[0],
                      0.0,
                      _mole_additions,
                      dmole_additions);
}

sharedParams()

InputParameters GeochemistryReactorBase::sharedParams ( )

staticinherited

contains params that are shared with AddGeochemistrySolverAction and its children

Definition at line 13 of file GeochemistryReactorBase.C.

{
  InputParameters params = emptyInputParameters();
  params.addParam<std::vector<std::string>>(
      "swap_out_of_basis",
      {},
      "Species that should be removed from the model_definition's basis and be replaced with the "
      "swap_into_basis species");
  params.addParam<std::vector<std::string>>(
      "swap_into_basis",
      {},
      "Species that should be removed from the model_definition's equilibrium species list and "
      "added to the basis.  There must be the same number of species in swap_out_of_basis and "
      "swap_into_basis.  These swaps are performed before any other computations during the "
      "initial problem setup. If this list contains more than one species, the swapping is "
      "performed one-by-one, starting with the first pair (swap_out_of_basis[0] and "
      "swap_into_basis[0]), then the next pair, etc");
  MultiMooseEnum constraint_user_meaning(
      "kg_solvent_water bulk_composition bulk_composition_with_kinetic free_concentration "
      "free_mineral activity log10activity fugacity log10fugacity");
  params.addRequiredParam<MultiMooseEnum>(
      "constraint_meaning",
      constraint_user_meaning,
      "Meanings of the numerical values given in constraint_value.  kg_solvent_water: can only be "
      "applied to H2O and units must be kg.  bulk_composition: can be applied to all non-gas "
      "species, and represents the total amount of the basis species contained as free species as "
      "well as the amount found in secondary species but not in kinetic species, and units must be "
      "moles or mass (kg, g, etc).  bulk_composition_with_kinetic: can be applied to all non-gas "
      "species, and represents the total amount of the basis species contained as free species as "
      "well as the amount found in secondary species and in kinetic species, and units must be "
      "moles or mass (kg, g, etc).  free_concentration: can be applied to all basis species that "
      "are not gas and not H2O and not mineral, and represents the total amount of the basis "
      "species existing freely (not as secondary species) within the solution, and units must be "
      "molal or mass_per_kg_solvent.  free_mineral: can be applied to all mineral basis species, "
      "and represents the total amount of the mineral existing freely (precipitated) within the "
      "solution, and units must be moles, mass or cm3.  activity and log10activity: can be applied "
      "to basis species that are not gas and not mineral and not sorbing sites, and represents the "
      "activity of the basis species (recall pH = -log10activity), and units must be "
      "dimensionless.  fugacity and log10fugacity: can be applied to gases, and units must be "
      "dimensionless");
  MultiMooseEnum constraint_unit("dimensionless moles molal kg g mg ug kg_per_kg_solvent "
                                 "g_per_kg_solvent mg_per_kg_solvent ug_per_kg_solvent cm3");
  params.addRequiredParam<MultiMooseEnum>(
      "constraint_unit",
      constraint_unit,
      "Units of the numerical values given in constraint_value.  Dimensionless: should only be "
      "used for activity or fugacity constraints.  Moles: mole number.  Molal: moles per kg "
      "solvent water.  kg: kilograms.  g: grams.  mg: milligrams.  ug: micrograms.  "
      "kg_per_kg_solvent: kilograms per kg solvent water.  g_per_kg_solvent: grams per kg solvent "
      "water.  mg_per_kg_solvent: milligrams per kg solvent water.  ug_per_kg_solvent: micrograms "
      "per kg solvent water.  cm3: cubic centimeters");
  params.addRequiredParam<std::vector<std::string>>(
      "constraint_species",
      "Names of the species that have their values fixed to constraint_value with meaning "
      "constraint_meaning.  All basis species (after swap_into_basis and swap_out_of_basis) must "
      "be provided with exactly one constraint.  These constraints are used to compute the "
      "configuration during the initial problem setup, and in time-dependent simulations they may "
      "be modified as time progresses.");
  params.addRequiredParam<std::vector<Real>>(
      "constraint_value", "Numerical value of the containts on constraint_species");
  params.addRangeCheckedParam<Real>(
      "max_ionic_strength", 3.0, "max_ionic_strength >= 0.0", "Maximum value of ionic strength");
  params.addParam<unsigned>(
      "extra_iterations_to_make_consistent",
      0,
      "Extra iterations to make the molalities, activities, etc, consistent "
      "before commencing the Newton process to find the aqueous configuration");
  params.addRequiredParam<std::string>(
      "charge_balance_species",
      "Charge balance will be enforced on this basis species.  This means that its bulk mole "
      "number may be changed from the initial value you provide in order to ensure charge "
      "neutrality.  After the initial swaps have been performed, this must be in the basis, and it "
      "must be provided with a bulk_composition constraint_meaning.");
  params.addParam<std::vector<std::string>>(
      "prevent_precipitation",
      {},
      "Mineral species in this list will be prevented from precipitating, irrespective of their "
      "saturation index (unless they are initially in the basis)");
  params.addParam<Real>(
      "abs_tol",
      1E-10,
      "If the residual of the algebraic system (measured in mol) is lower than this value, the "
      "Newton process (that finds the aqueous configuration) is deemed to have converged");
  params.addParam<Real>("rel_tol",
                        1E-200,
                        "If the residual of the algebraic system (measured in mol) is lower than "
                        "this value times the initial residual, the Newton process (that finds the "
                        "aqueous configuration) is deemed to have converged");
  params.addRangeCheckedParam<Real>("min_initial_molality",
                                    1E-20,
                                    "min_initial_molality > 0.0",
                                    "Minimum value of the initial-guess molality used in the "
                                    "Newton process to find the aqueous configuration");
  params.addParam<unsigned>(
      "max_iter",
      100,
      "Maximum number of Newton iterations allowed when finding the aqueous configuration");
  params.addParam<Real>(
      "max_initial_residual",
      1E3,
      "Attempt to alter the initial-guess molalities so that the initial residual for the Newton "
      "process (that finds the aqueous configuration) is less than this number of moles");
  params.addRangeCheckedParam<Real>(
      "swap_threshold",
      0.1,
      "swap_threshold >= 0.0",
      "If the molality of a basis species in the algebraic system falls below swap_threshold * "
      "abs_tol then it is swapped out of the basis.  The dimensions of swap_threshold are "
      "1/kg(solvent water)");
  params.addParam<unsigned>(
      "max_swaps_allowed",
      20,
      "Maximum number of swaps allowed during a single attempt at finding the aqueous "
      "configuration.  Usually only a handful of swaps are used: this parameter prevents endless "
      "cyclic swapping that prevents the algorithm from progressing");
  params.addParam<unsigned>(
      "ramp_max_ionic_strength_initial",
      20,
      "The number of iterations over which to progressively increase the maximum ionic strength "
      "(from zero to max_ionic_strength) during the initial equilibration.  Increasing this can "
      "help in convergence of the Newton process, at the cost of spending more time finding the "
      "aqueous configuration.");
  params.addParam<bool>(
      "ionic_str_using_basis_only",
      false,
      "If set to true, ionic strength and stoichiometric ionic strength will be computed using "
      "only the basis molalities, ignoring molalities of equilibrium species.  Since basis "
      "molality is usually greater than equilibrium molality, and the whole Debye-Huckel concept "
      "of activity coefficients depending on ionic strength is only approximate in practice, "
      "setting this parameter true often results in a reasonable approximation.  It can aid in "
      "convergence since it eliminates problems associated with unphysical huge equilibrium "
      "molalities that can occur during Newton iteration to the solution");
  params.addParam<bool>("stoichiometric_ionic_str_using_Cl_only",
                        false,
                        "If set to true, the stoichiometric ionic strength will be set equal to "
                        "Cl- molality (or max_ionic_strength if the Cl- molality is too "
                        "big).  This flag overrides ionic_str_using_basis_molality_only");
  return params;
}

Referenced by AddGeochemistrySolverAction::validParams(), and GeochemistryReactorBase::validParams().

threadJoin()

virtual void GeochemistryReactorBase::threadJoin ( const UserObject &  )

inlineoverridevirtualinherited

Implements NodalUserObject.

Reimplemented in GeochemistrySpatialReactor.

Definition at line 28 of file GeochemistryReactorBase.h.

{}

validParams()

InputParameters GeochemistryTimeIndependentReactor::validParams ( )

static

Definition at line 15 of file GeochemistryTimeIndependentReactor.C.

{
  InputParameters params = GeochemistryReactorBase::validParams();
  params.addParam<Real>("temperature", 25.0, "The temperature (degC) of the aqueous solution");
  params.addClassDescription("UserObject that controls the time-independent geochemistry reaction "
                             "processes.  Spatial dependence is not possible using this class");
  params.set<ExecFlagEnum>("execute_on") = {EXEC_FINAL};
  return params;
}

Member Data Documentation

_abs_residual

std::vector<Real> GeochemistryReactorBase::_abs_residual

protectedinherited

L1norm of the solver residual at each node.

Definition at line 103 of file GeochemistryReactorBase.h.

Referenced by GeochemistrySpatialReactor::execute(), GeochemistryTimeDependentReactor::execute(), GeochemistrySpatialReactor::getSolverResidual(), GeochemistryTimeDependentReactor::getSolverResidual(), getSolverResidual(), GeochemistrySpatialReactor::initialSetup(), GeochemistryTimeDependentReactor::initialSetup(), initialSetup(), GeochemistryTimeDependentReactor::postSolveExchanger(), and GeochemistrySpatialReactor::threadJoin().

_egs

GeochemicalSystem GeochemistryTimeIndependentReactor::_egs

protected

The equilibrium geochemical system that holds all the molalities, activities, etc.

Definition at line 40 of file GeochemistryTimeIndependentReactor.h.

Referenced by getGeochemicalSystem(), and initialSetup().

_gac

GeochemistryActivityCoefficientsDebyeHuckel GeochemistryReactorBase::_gac

protectedinherited

The activity calculator.

Definition at line 91 of file GeochemistryReactorBase.h.

Referenced by GeochemistrySpatialReactor::GeochemistrySpatialReactor().

_initial_max_ionic_str

const Real GeochemistryReactorBase::_initial_max_ionic_str

protectedinherited

Initial value of maximum ionic strength.

Definition at line 87 of file GeochemistryReactorBase.h.

_is

GeochemistryIonicStrength GeochemistryReactorBase::_is

protectedinherited

The ionic strength calculator.

Definition at line 89 of file GeochemistryReactorBase.h.

Referenced by GeochemistrySpatialReactor::GeochemistrySpatialReactor().

_max_swaps_allowed

const unsigned GeochemistryReactorBase::_max_swaps_allowed

protectedinherited

Maximum number of swaps allowed during a single solve.

Definition at line 93 of file GeochemistryReactorBase.h.

_mgd

ModelGeochemicalDatabase GeochemistryReactorBase::_mgd

protectedinherited

my copy of the underlying ModelGeochemicalDatabase

Definition at line 79 of file GeochemistryReactorBase.h.

Referenced by GeochemistryTimeDependentReactor::execute(), GeochemistrySpatialReactor::GeochemistrySpatialReactor(), GeochemistryTimeDependentReactor::GeochemistryTimeDependentReactor(), GeochemistryTimeDependentReactor::newTemperature(), GeochemistryTimeDependentReactor::postSolveFlowThrough(), GeochemistryTimeDependentReactor::preSolveDump(), and GeochemistryTimeDependentReactor::preSolveFlush().

_mole_additions

DenseVector<Real> GeochemistryTimeIndependentReactor::_mole_additions

protected

mole additions: these are always zero but are used in getMoleAdditions and the solve

Definition at line 44 of file GeochemistryTimeIndependentReactor.h.

Referenced by getMoleAdditions(), and initialSetup().

_num_basis

const unsigned GeochemistryReactorBase::_num_basis

protectedinherited

number of basis species

Definition at line 83 of file GeochemistryReactorBase.h.

Referenced by GeochemistrySpatialReactor::execute(), GeochemistryTimeDependentReactor::execute(), initialSetup(), GeochemistryTimeDependentReactor::newTemperature(), GeochemistryTimeDependentReactor::postSolveExchanger(), GeochemistryTimeDependentReactor::postSolveFlowThrough(), GeochemistryTimeDependentReactor::preSolveDump(), GeochemistryTimeDependentReactor::preSolveFlush(), and GeochemistryTimeDependentReactor::removeCurrentSpecies().

_num_eqm

const unsigned GeochemistryReactorBase::_num_eqm

protectedinherited

number of equilibrium species

Definition at line 85 of file GeochemistryReactorBase.h.

_num_my_nodes

const unsigned GeochemistryReactorBase::_num_my_nodes

protectedinherited

Number of nodes handled by this processor (will need to be made un-const when mesh adaptivity is handled)

Definition at line 77 of file GeochemistryReactorBase.h.

Referenced by GeochemistrySpatialReactor::buildMyNodeNumber(), GeochemistrySpatialReactor::GeochemistrySpatialReactor(), GeochemistrySpatialReactor::initialize(), GeochemistrySpatialReactor::initialSetup(), GeochemistryTimeDependentReactor::initialSetup(), initialSetup(), and GeochemistrySpatialReactor::threadJoin().

_pgs

const PertinentGeochemicalSystem& GeochemistryReactorBase::_pgs

protectedinherited

Reference to the original PertinentGeochemicalSystem used to create the ModelGeochemicalDatabase.

Definition at line 81 of file GeochemistryReactorBase.h.

Referenced by GeochemistryReactorBase::getPertinentGeochemicalSystem().

_small_molality

const Real GeochemistryReactorBase::_small_molality

protectedinherited

A small value of molality.

Definition at line 97 of file GeochemistryReactorBase.h.

Referenced by GeochemistryTimeDependentReactor::postSolveFlowThrough().

_solver

GeochemicalSolver GeochemistryTimeIndependentReactor::_solver

protected

The solver.

Definition at line 42 of file GeochemistryTimeIndependentReactor.h.

Referenced by initialSetup().

_solver_output

std::vector<std::stringstream> GeochemistryReactorBase::_solver_output

protectedinherited

The solver output at each node.

Definition at line 99 of file GeochemistryReactorBase.h.

Referenced by GeochemistrySpatialReactor::execute(), GeochemistryTimeDependentReactor::execute(), GeochemistrySpatialReactor::getSolverOutput(), GeochemistryTimeDependentReactor::getSolverOutput(), getSolverOutput(), GeochemistrySpatialReactor::initialSetup(), GeochemistryTimeDependentReactor::initialSetup(), initialSetup(), GeochemistryTimeDependentReactor::postSolveExchanger(), and GeochemistrySpatialReactor::threadJoin().

_swapper

GeochemistrySpeciesSwapper GeochemistryReactorBase::_swapper

protectedinherited

The species swapper.

Definition at line 95 of file GeochemistryReactorBase.h.

Referenced by GeochemistrySpatialReactor::GeochemistrySpatialReactor().

_temperature

const Real GeochemistryTimeIndependentReactor::_temperature

protected

Definition at line 38 of file GeochemistryTimeIndependentReactor.h.

_tot_iter

std::vector<unsigned> GeochemistryReactorBase::_tot_iter

protectedinherited

Number of iterations used by the solver at each node.

Definition at line 101 of file GeochemistryReactorBase.h.

Referenced by GeochemistrySpatialReactor::execute(), GeochemistryTimeDependentReactor::execute(), GeochemistrySpatialReactor::getSolverIterations(), GeochemistryTimeDependentReactor::getSolverIterations(), getSolverIterations(), GeochemistrySpatialReactor::initialSetup(), GeochemistryTimeDependentReactor::initialSetup(), initialSetup(), GeochemistryTimeDependentReactor::postSolveExchanger(), and GeochemistrySpatialReactor::threadJoin().

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The documentation for this class was generated from the following files:

• geochemistry/include/userobjects/GeochemistryTimeIndependentReactor.h
• geochemistry/src/userobjects/GeochemistryTimeIndependentReactor.C