libMesh::NoxNonlinearSolver< T > Class Template Reference

This class provides an interface to nox iterative solvers that is compatible with the libMesh NonlinearSolver<> More...

#include <trilinos_nox_nonlinear_solver.h>

Inheritance diagram for libMesh::NoxNonlinearSolver< T >:

Public Types
typedef NonlinearImplicitSystem	sys_type
	The type of system.

Public Member Functions
	NoxNonlinearSolver (sys_type &system)
	Constructor.
virtual	~NoxNonlinearSolver ()
	Destructor.
virtual void	clear () override
	Release all memory and clear data structures.
virtual void	init (const char *name=nullptr) override
	Initialize data structures if not done so already.
virtual std::pair< unsigned int, Real >	solve (SparseMatrix< T > &, NumericVector< T > &, NumericVector< T > &, const double, const unsigned int) override
	Call the Nox solver.
virtual int	get_total_linear_iterations () override
	Get the total number of linear iterations done in the last solve.
virtual unsigned	get_current_nonlinear_iteration_number () const override
bool	initialized () const
virtual void	print_converged_reason ()
	Prints a useful message about why the latest nonlinear solve con(di)verged.
const sys_type &	system () const
sys_type &	system ()
void	attach_preconditioner (Preconditioner< T > *preconditioner)
	Attaches a Preconditioner object to be used during the linear solves.
void	set_solver_configuration (SolverConfiguration &solver_configuration)
	Set the solver configuration object.
virtual bool	reuse_preconditioner () const
	Get the reuse_preconditioner flag.
virtual void	set_reuse_preconditioner (bool reuse)
	Set the reuse preconditioner flag.
virtual unsigned int	reuse_preconditioner_max_linear_its () const
	Get the reuse_preconditioner_max_linear_its parameter.
virtual void	set_reuse_preconditioner_max_linear_its (unsigned int i)
	Set the reuse_preconditioner_max_linear_its parameter.
virtual void	force_new_preconditioner ()
	Immediately force a new preconditioner.
virtual void	set_exact_constraint_enforcement (bool enable)
	Enable (or disable; it is true by default) exact enforcement of constraints at the solver level, correcting any constrained DoF coefficients in current_local_solution as well as applying nonlinear residual and Jacobian terms based on constraint equations.
bool	exact_constraint_enforcement ()
const Parallel::Communicator &	comm () const
processor_id_type	n_processors () const
processor_id_type	processor_id () const

Static Public Member Functions
static std::unique_ptr< NonlinearSolver< T > >	build (sys_type &s, const SolverPackage solver_package=libMesh::default_solver_package())
	Builds a NonlinearSolver using the nonlinear solver package specified by solver_package.
static std::string	get_info ()
	Gets a string containing the reference information.
static void	print_info (std::ostream &out_stream=libMesh::out)
	Prints the reference information, by default to libMesh::out.
static unsigned int	n_objects ()
	Prints the number of outstanding (created, but not yet destroyed) objects.
static void	enable_print_counter_info ()
	Methods to enable/disable the reference counter output from print_info().
static void	disable_print_counter_info ()

Public Attributes
void(*	residual )(const NumericVector< Number > &X, NumericVector< Number > &R, sys_type &S)
	Function that computes the residual R(X) of the nonlinear system at the input iterate X.
NonlinearImplicitSystem::ComputeResidual *	residual_object
	Object that computes the residual R(X) of the nonlinear system at the input iterate X.
NonlinearImplicitSystem::ComputeResidual *	fd_residual_object
	Object that computes the residual R(X) of the nonlinear system at the input iterate X for the purpose of forming a finite-differenced Jacobian.
NonlinearImplicitSystem::ComputeResidual *	mffd_residual_object
	Object that computes the residual R(X) of the nonlinear system at the input iterate X for the purpose of forming Jacobian-vector products via finite differencing.
void(*	jacobian )(const NumericVector< Number > &X, SparseMatrix< Number > &J, sys_type &S)
	Function that computes the Jacobian J(X) of the nonlinear system at the input iterate X.
NonlinearImplicitSystem::ComputeJacobian *	jacobian_object
	Object that computes the Jacobian J(X) of the nonlinear system at the input iterate X.
void(*	matvec )(const NumericVector< Number > &X, NumericVector< Number > *R, SparseMatrix< Number > *J, sys_type &S)
	Function that computes either the residual \( R(X) \) or the Jacobian \( J(X) \) of the nonlinear system at the input iterate \( X \).
NonlinearImplicitSystem::ComputeResidualandJacobian *	residual_and_jacobian_object
	Object that computes either the residual \( R(X) \) or the Jacobian \( J(X) \) of the nonlinear system at the input iterate \( X \).
void(*	bounds )(NumericVector< Number > &XL, NumericVector< Number > &XU, sys_type &S)
	Function that computes the lower and upper bounds XL and XU on the solution of the nonlinear system.
NonlinearImplicitSystem::ComputeBounds *	bounds_object
	Object that computes the bounds vectors \( XL \) and \( XU \).
void(*	nullspace )(std::vector< NumericVector< Number > * > &sp, sys_type &S)
	Function that computes a basis for the Jacobian's nullspace – the kernel or the "zero energy modes" – that can be used in solving a degenerate problem iteratively, if the solver supports it (e.g., PETSc's KSP).
NonlinearImplicitSystem::ComputeVectorSubspace *	nullspace_object
	A callable object that computes a basis for the Jacobian's nullspace – the kernel or the "zero energy modes" – that can be used in solving a degenerate problem iteratively, if the solver supports it (e.g., PETSc's KSP).
void(*	transpose_nullspace )(std::vector< NumericVector< Number > * > &sp, sys_type &S)
	Function that computes a basis for the transpose Jacobian's nullspace – when solving a degenerate problem iteratively, if the solver supports it (e.g., PETSc's KSP), it is used to remove contributions outside of R(jac)
NonlinearImplicitSystem::ComputeVectorSubspace *	transpose_nullspace_object
	A callable object that computes a basis for the transpose Jacobian's nullspace – when solving a degenerate problem iteratively, if the solver supports it (e.g., PETSc's KSP), it is used to remove contributions outside of R(jac)
void(*	nearnullspace )(std::vector< NumericVector< Number > * > &sp, sys_type &S)
	Function that computes a basis for the Jacobian's near nullspace – the set of "low energy modes" – that can be used for AMG coarsening, if the solver supports it (e.g., ML, PETSc's GAMG).
NonlinearImplicitSystem::ComputeVectorSubspace *	nearnullspace_object
	A callable object that computes a basis for the Jacobian's near nullspace – the set of "low energy modes" – that can be used for AMG coarsening, if the solver supports it (e.g., ML, PETSc's GAMG).
void(*	user_presolve )(sys_type &S)
	Customizable function pointer which users can attach to the solver.
void(*	postcheck )(const NumericVector< Number > &old_soln, NumericVector< Number > &search_direction, NumericVector< Number > &new_soln, bool &changed_search_direction, bool &changed_new_soln, sys_type &S)
	Function that performs a "check" on the Newton search direction and solution after each nonlinear step.
NonlinearImplicitSystem::ComputePostCheck *	postcheck_object
	A callable object that is executed after each nonlinear iteration.
NonlinearImplicitSystem::ComputePreCheck *	precheck_object
unsigned int	max_nonlinear_iterations
	Maximum number of non-linear iterations.
unsigned int	max_function_evaluations
	Maximum number of function evaluations.
double	absolute_residual_tolerance
	The NonlinearSolver should exit after the residual is reduced to either less than absolute_residual_tolerance or less than relative_residual_tolerance times the initial residual.
double	relative_residual_tolerance
double	divergence_tolerance
	The NonlinearSolver should exit if the residual becomes greater than the initial residual times the divergence_tolerance.
double	absolute_step_tolerance
	The NonlinearSolver should exit after the full nonlinear step norm is reduced to either less than absolute_step_tolerance or less than relative_step_tolerance times the largest nonlinear solution which has been seen so far.
double	relative_step_tolerance
unsigned int	max_linear_iterations
	Each linear solver step should exit after max_linear_iterations is exceeded.
double	initial_linear_tolerance
	Any required linear solves will at first be done with this tolerance; the NonlinearSolver may tighten the tolerance for later solves.
double	minimum_linear_tolerance
	The tolerance for linear solves is kept above this minimum.
bool	converged
	After a call to solve this will reflect whether or not the nonlinear solve was successful.

Protected Types
typedef std::map< std::string, std::pair< unsigned int, unsigned int > >	Counts
	Data structure to log the information.

Protected Member Functions
void	increment_constructor_count (const std::string &name) noexcept
	Increments the construction counter.
void	increment_destructor_count (const std::string &name) noexcept
	Increments the destruction counter.

Protected Attributes
bool	_reuse_preconditioner
	Whether we should reuse the linear preconditioner.
bool	_exact_constraint_enforcement
	Whether we should enforce exact constraints globally during a solve.
unsigned int	_reuse_preconditioner_max_linear_its
	Number of linear iterations to retain the preconditioner.
sys_type &	_system
	A reference to the system we are solving.
bool	_is_initialized
	Flag indicating if the data structures have been initialized.
Preconditioner< T > *	_preconditioner
	Holds the Preconditioner object to be used for the linear solves.
SolverConfiguration *	_solver_configuration
	Optionally store a SolverOptions object that can be used to set parameters like solver type, tolerances and iteration limits.
const Parallel::Communicator &	_communicator

Static Protected Attributes
static Counts	_counts
	Actually holds the data.
static Threads::atomic< unsigned int >	_n_objects
	The number of objects.
static Threads::spin_mutex	_mutex
	Mutual exclusion object to enable thread-safe reference counting.
static bool	_enable_print_counter = true
	Flag to control whether reference count information is printed when print_info is called.

Private Attributes
NOX::Solver::Generic *	_solver
	Nonlinear solver context.
Problem_Interface *	_interface
	Solver interface.
int	_n_linear_iterations
	Stores the total number of linear iterations from the last solve.

Detailed Description

template<typename T>
class libMesh::NoxNonlinearSolver< T >

This class provides an interface to nox iterative solvers that is compatible with the libMesh NonlinearSolver<>

Author

Chris Newman

Date

2008

Definition at line 61 of file trilinos_nox_nonlinear_solver.h.

Member Typedef Documentation

Counts

typedef std::map<std::string, std::pair<unsigned int, unsigned int> > libMesh::ReferenceCounter::Counts

protectedinherited

Data structure to log the information.

The log is identified by the class name.

Definition at line 119 of file reference_counter.h.

sys_type

template<typename T >

typedef NonlinearImplicitSystem libMesh::NoxNonlinearSolver< T >::sys_type

The type of system.

Definition at line 67 of file trilinos_nox_nonlinear_solver.h.

Constructor & Destructor Documentation

NoxNonlinearSolver()

template<typename T >

libMesh::NoxNonlinearSolver< T >::NoxNonlinearSolver ( sys_type &  system )

inlineexplicit

Constructor.

Initializes Nox data structures

Definition at line 137 of file trilinos_nox_nonlinear_solver.h.

                                                            :
  NonlinearSolver<T>(system),
  _solver(nullptr),
  _interface(nullptr),
  _n_linear_iterations(0)
{
}

~NoxNonlinearSolver()

template<typename T >

libMesh::NoxNonlinearSolver< T >::~NoxNonlinearSolver ( )

inlinevirtual

Destructor.

Definition at line 149 of file trilinos_nox_nonlinear_solver.h.

{
  this->clear ();
}

Member Function Documentation

attach_preconditioner()

template<typename T >

void libMesh::NonlinearSolver< T >::attach_preconditioner ( Preconditioner< T > *  preconditioner )

inherited

Attaches a Preconditioner object to be used during the linear solves.

Definition at line 74 of file nonlinear_solver.C.

{
  libmesh_error_msg_if(this->_is_initialized, "Preconditioner must be attached before the solver is initialized!");
 
  _preconditioner = preconditioner;
}

build()

template<typename T >

std::unique_ptr< NonlinearSolver< T > > libMesh::NonlinearSolver< T >::build ( sys_type &  s, const SolverPackage  solver_package = libMesh::default_solver_package()  )

staticinherited

Builds a NonlinearSolver using the nonlinear solver package specified by solver_package.

Definition at line 40 of file nonlinear_solver.C.

{
  // Build the appropriate solver
  switch (solver_package)
    {
 
#ifdef LIBMESH_HAVE_PETSC
    case PETSC_SOLVERS:
      return std::make_unique<PetscNonlinearSolver<T>>(s);
#endif // LIBMESH_HAVE_PETSC
 
#if defined(LIBMESH_TRILINOS_HAVE_NOX) && defined(LIBMESH_TRILINOS_HAVE_EPETRA)
    case TRILINOS_SOLVERS:
      return std::make_unique<NoxNonlinearSolver<T>>(s);
#endif
 
    default:
      libmesh_error_msg("ERROR:  Unrecognized solver package: " << solver_package);
    }
}

References libMesh::PETSC_SOLVERS, and libMesh::TRILINOS_SOLVERS.

clear()

template<typename T >

void libMesh::NoxNonlinearSolver< T >::clear ( )

overridevirtual

Release all memory and clear data structures.

Reimplemented from libMesh::NonlinearSolver< T >.

Definition at line 277 of file trilinos_nox_nonlinear_solver.C.

{
}

comm()

const Parallel::Communicator & libMesh::ParallelObject::comm ( ) const

inlineinherited

Returns

A reference to the Parallel::Communicator object used by this mesh.

Definition at line 97 of file parallel_object.h.

  { return _communicator; }

References libMesh::ParallelObject::_communicator.

Referenced by libMesh::__libmesh_petsc_diff_solver_jacobian(), libMesh::__libmesh_petsc_diff_solver_monitor(), libMesh::__libmesh_petsc_diff_solver_residual(), libMesh::ExactSolution::_compute_error(), libMesh::UniformRefinementEstimator::_estimate_error(), libMesh::Partitioner::_find_global_index_by_pid_map(), libMesh::BoundaryInfo::_find_id_maps(), libMesh::PetscLinearSolver< T >::_petsc_shell_matrix_get_diagonal(), libMesh::SlepcEigenSolver< T >::_petsc_shell_matrix_get_diagonal(), libMesh::PetscLinearSolver< T >::_petsc_shell_matrix_mult(), libMesh::SlepcEigenSolver< T >::_petsc_shell_matrix_mult(), libMesh::PetscLinearSolver< T >::_petsc_shell_matrix_mult_add(), libMesh::DofMap::add_constraints_to_send_list(), add_cube_convex_hull_to_mesh(), libMesh::PetscDMWrapper::add_dofs_helper(), libMesh::PetscDMWrapper::add_dofs_to_section(), libMesh::TransientRBConstruction::add_IC_to_RB_space(), libMesh::RBEIMEvaluation::add_interpolation_data(), libMesh::CondensedEigenSystem::add_matrices(), libMesh::EigenSystem::add_matrices(), libMesh::System::add_matrix(), libMesh::System::add_matrix(), libMesh::System::add_matrix(), libMesh::RBConstruction::add_scaled_matrix_and_vector(), libMesh::System::add_vector(), libMesh::MeshTools::Modification::all_tri(), libMesh::LaplaceMeshSmoother::allgather_graph(), libMesh::DofMap::allgather_recursive_constraints(), libMesh::RBConstruction::allocate_data_structures(), libMesh::TransientRBConstruction::allocate_data_structures(), libMesh::TransientRBConstruction::assemble_affine_expansion(), libMesh::AdvectionSystem::assemble_claw_rhs(), libMesh::FEMSystem::assemble_qoi(), libMesh::Nemesis_IO::assert_symmetric_cmaps(), libMesh::MeshCommunication::assign_global_indices(), libMesh::Partitioner::assign_partitioning(), libMesh::MeshTools::Generation::build_extrusion(), libMesh::Partitioner::build_graph(), libMesh::InfElemBuilder::build_inf_elem(), libMesh::BoundaryInfo::build_node_list_from_side_list(), libMesh::EquationSystems::build_parallel_elemental_solution_vector(), libMesh::EquationSystems::build_parallel_solution_vector(), libMesh::PetscDMWrapper::build_section(), libMesh::PetscDMWrapper::build_sf(), libMesh::MeshBase::cache_elem_data(), libMesh::DofMap::check_dirichlet_bcid_consistency(), libMesh::MeshTetInterface::check_hull_integrity(), libMesh::MeshBase::complete_preparation(), libMesh::RBConstruction::compute_Fq_representor_innerprods(), libMesh::RBConstruction::compute_max_error_bound(), libMesh::Nemesis_IO_Helper::compute_num_global_elem_blocks(), libMesh::Nemesis_IO_Helper::compute_num_global_nodesets(), libMesh::Nemesis_IO_Helper::compute_num_global_sidesets(), libMesh::RBConstruction::compute_output_dual_innerprods(), libMesh::RBConstruction::compute_residual_dual_norm_slow(), libMesh::RBSCMConstruction::compute_SCM_bounds_on_training_set(), libMesh::DofMap::computed_sparsity_already(), libMesh::Problem_Interface::computeJacobian(), libMesh::Problem_Interface::computePreconditioner(), PetscSolverConfiguration::configure_solver(), libMesh::ContinuationSystem::ContinuationSystem(), libMesh::MeshBase::copy_constraint_rows(), libMesh::ExodusII_IO::copy_elemental_solution(), libMesh::ExodusII_IO::copy_nodal_solution(), libMesh::ExodusII_IO::copy_scalar_solution(), libMesh::CondensedEigenSystem::copy_super_to_sub(), libMesh::MeshTools::correct_node_proc_ids(), libMesh::MeshTools::create_bounding_box(), libMesh::DofMap::create_dof_constraints(), libMesh::MeshTools::create_nodal_bounding_box(), libMesh::MeshRefinement::create_parent_error_vector(), libMesh::MeshTools::create_processor_bounding_box(), libMesh::MeshTools::create_subdomain_bounding_box(), libMesh::PetscMatrix< T >::create_submatrix_nosort(), create_wrapped_function(), libMesh::MeshCommunication::delete_remote_elements(), libMesh::MeshBase::detect_interior_parents(), libMesh::RBEIMEvaluation::distribute_bfs(), DMlibMeshFunction(), DMlibMeshJacobian(), DMlibMeshSetSystem_libMesh(), DMVariableBounds_libMesh(), libMesh::DTKSolutionTransfer::DTKSolutionTransfer(), libMesh::MeshRefinement::eliminate_unrefined_patches(), libMesh::RBEIMConstruction::enrich_eim_approximation_on_interiors(), libMesh::RBEIMConstruction::enrich_eim_approximation_on_nodes(), libMesh::RBEIMConstruction::enrich_eim_approximation_on_sides(), libMesh::TransientRBConstruction::enrich_RB_space(), libMesh::EpetraVector< T >::EpetraVector(), AssembleOptimization::equality_constraints(), libMesh::AdjointRefinementEstimator::estimate_error(), libMesh::ExactErrorEstimator::estimate_error(), libMesh::JumpErrorEstimator::estimate_error(), libMesh::PatchRecoveryErrorEstimator::estimate_error(), libMesh::WeightedPatchRecoveryErrorEstimator::estimate_error(), libMesh::SmoothnessEstimator::estimate_smoothness(), libMesh::MeshRefinement::flag_elements_by_elem_fraction(), libMesh::MeshRefinement::flag_elements_by_error_fraction(), libMesh::MeshRefinement::flag_elements_by_error_tolerance(), libMesh::MeshRefinement::flag_elements_by_mean_stddev(), libMesh::MeshRefinement::flag_elements_by_nelem_target(), libMesh::RBEIMEvaluation::gather_bfs(), libMesh::DofMap::gather_constraints(), libMesh::MeshfreeInterpolation::gather_remote_data(), libMesh::CondensedEigenSystem::get_eigenpair(), libMesh::RBEIMEvaluation::get_eim_basis_function_node_value(), libMesh::RBEIMEvaluation::get_eim_basis_function_side_value(), libMesh::RBEIMEvaluation::get_eim_basis_function_value(), libMesh::MeshBase::get_info(), libMesh::RBEIMEvaluation::get_interior_basis_functions_as_vecs(), libMesh::ImplicitSystem::get_linear_solver(), libMesh::RBEIMConstruction::get_max_abs_value(), libMesh::RBEIMConstruction::get_node_max_abs_value(), libMesh::RBEIMEvaluation::get_parametrized_function_node_value(), libMesh::RBEIMEvaluation::get_parametrized_function_side_value(), libMesh::RBEIMEvaluation::get_parametrized_function_value(), libMesh::RBEIMConstruction::get_random_point(), libMesh::RBEIMConstruction::get_random_point(), libMesh::RBEIMConstruction::get_random_point(), libMesh::MeshTetInterface::improve_hull_integrity(), AssembleOptimization::inequality_constraints(), AssembleOptimization::inequality_constraints_jacobian(), libMesh::StaticCondensation::init(), libMesh::TimeSolver::init(), libMesh::SystemSubsetBySubdomain::init(), libMesh::LocationMap< T >::init(), libMesh::PetscDMWrapper::init_and_attach_petscdm(), libMesh::PetscDMWrapper::init_and_attach_petscdm(), ElasticitySystem::init_data(), libMesh::AdvectionSystem::init_data(), libMesh::ClawSystem::init_data(), libMesh::PetscDMWrapper::init_petscdm(), libMesh::ExodusII_IO_Helper::initialize(), libMesh::OptimizationSystem::initialize_equality_constraints_storage(), libMesh::OptimizationSystem::initialize_inequality_constraints_storage(), libMesh::RBEIMConstruction::initialize_parametrized_functions_in_training_set(), libMesh::RBEIMConstruction::inner_product(), integrate_function(), libMesh::MeshTools::Modification::interpolate_surface(), libMesh::MeshTools::libmesh_assert_consistent_distributed(), libMesh::MeshTools::libmesh_assert_consistent_distributed_nodes(), libMesh::MeshTools::libmesh_assert_contiguous_dof_ids(), libMesh::MeshTools::libmesh_assert_equal_connectivity(), libMesh::MeshTools::libmesh_assert_equal_points(), libMesh::MeshTools::libmesh_assert_parallel_consistent_new_node_procids(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Elem >(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Node >(), libMesh::MeshTools::libmesh_assert_topology_consistent_procids< Node >(), libMesh::MeshTools::libmesh_assert_valid_boundary_ids(), libMesh::MeshTools::libmesh_assert_valid_constraint_rows(), libMesh::MeshTools::libmesh_assert_valid_dof_ids(), libMesh::MeshTools::libmesh_assert_valid_neighbors(), libMesh::DistributedMesh::libmesh_assert_valid_parallel_flags(), libMesh::DistributedMesh::libmesh_assert_valid_parallel_object_ids(), libMesh::DistributedMesh::libmesh_assert_valid_parallel_p_levels(), libMesh::MeshTools::libmesh_assert_valid_refinement_flags(), libMesh::MeshTools::libmesh_assert_valid_unique_ids(), libMesh::libmesh_petsc_linesearch_shellfunc(), libMesh::libmesh_petsc_preconditioner_apply(), libMesh::libmesh_petsc_snes_mffd_interface(), libMesh::libmesh_petsc_snes_postcheck(), libMesh::MeshRefinement::limit_level_mismatch_at_edge(), libMesh::MeshRefinement::limit_level_mismatch_at_node(), libMesh::MeshRefinement::limit_overrefined_boundary(), libMesh::MeshRefinement::limit_underrefined_boundary(), libMesh::LinearImplicitSystem::LinearImplicitSystem(), main(), libMesh::MeshCommunication::make_elems_parallel_consistent(), libMesh::MeshCommunication::make_new_node_proc_ids_parallel_consistent(), libMesh::MeshCommunication::make_new_nodes_parallel_consistent(), libMesh::MeshCommunication::make_node_bcids_parallel_consistent(), libMesh::MeshCommunication::make_node_ids_parallel_consistent(), libMesh::MeshCommunication::make_node_proc_ids_parallel_consistent(), libMesh::MeshCommunication::make_node_unique_ids_parallel_consistent(), libMesh::MeshCommunication::make_nodes_parallel_consistent(), libMesh::MeshCommunication::make_p_levels_parallel_consistent(), libMesh::TransientRBConstruction::mass_matrix_scaled_matvec(), libMesh::FEMSystem::mesh_position_set(), libMesh::TriangulatorInterface::MeshedHole::MeshedHole(), LinearElasticityWithContact::move_mesh(), libMesh::DistributedMesh::n_active_elem(), libMesh::MeshTools::n_active_levels(), libMesh::BoundaryInfo::n_boundary_conds(), libMesh::MeshTools::n_connected_components(), libMesh::DofMap::n_constrained_dofs(), libMesh::MeshBase::n_constraint_rows(), libMesh::DofMap::n_dofs(), libMesh::DofMap::n_dofs_per_processor(), libMesh::BoundaryInfo::n_edge_conds(), libMesh::CondensedEigenSystem::n_global_non_condensed_dofs(), libMesh::MeshTools::n_levels(), MixedOrderTest::n_neighbor_links(), libMesh::BoundaryInfo::n_nodeset_conds(), libMesh::SparsityPattern::Build::n_nonzeros(), libMesh::MeshTools::n_p_levels(), libMesh::BoundaryInfo::n_shellface_conds(), libMesh::RBEIMEvaluation::node_distribute_bfs(), libMesh::RBEIMEvaluation::node_gather_bfs(), libMesh::RBEIMConstruction::node_inner_product(), libMesh::PetscVector< T >::operator=(), libMesh::MeshBase::operator==(), libMesh::DistributedMesh::parallel_max_elem_id(), libMesh::DistributedMesh::parallel_max_node_id(), libMesh::DistributedMesh::parallel_max_unique_id(), libMesh::ReplicatedMesh::parallel_max_unique_id(), libMesh::DistributedMesh::parallel_n_elem(), libMesh::DistributedMesh::parallel_n_nodes(), libMesh::SparsityPattern::Build::parallel_sync(), libMesh::BoundaryInfo::parallel_sync_node_ids(), libMesh::BoundaryInfo::parallel_sync_side_ids(), libMesh::MeshTools::paranoid_n_levels(), libMesh::Partitioner::partition(), libMesh::Partitioner::partition_unpartitioned_elements(), libMesh::petsc_auto_fieldsplit(), LaplaceSystem::postprocess(), PoissonSystem::postprocess(), libMesh::MeshBase::print_constraint_rows(), libMesh::DofMap::print_dof_constraints(), libMesh::DofMap::process_mesh_constraint_rows(), libMesh::Partitioner::processor_pairs_to_interface_nodes(), libMesh::InterMeshProjection::project_system_vectors(), libMesh::XdrIO::read(), libMesh::Nemesis_IO::read(), FEMParameters::read(), libMesh::EquationSystems::read(), libMesh::CheckpointIO::read_header(), libMesh::ExodusII_IO::read_header(), libMesh::System::read_header(), libMesh::XdrIO::read_header(), libMesh::RBEIMEvaluation::read_in_interior_basis_functions(), libMesh::RBEIMEvaluation::read_in_node_basis_functions(), libMesh::RBEIMEvaluation::read_in_side_basis_functions(), libMesh::RBEvaluation::read_in_vectors_from_multiple_files(), libMesh::RBConstruction::read_riesz_representors_from_files(), libMesh::TransientRBConstruction::read_riesz_representors_from_files(), libMesh::System::read_SCALAR_dofs(), libMesh::XdrIO::read_serialized_bc_names(), libMesh::XdrIO::read_serialized_bcs_helper(), libMesh::System::read_serialized_blocked_dof_objects(), libMesh::XdrIO::read_serialized_connectivity(), libMesh::XdrIO::read_serialized_nodes(), libMesh::XdrIO::read_serialized_nodesets(), libMesh::XdrIO::read_serialized_subdomain_names(), libMesh::System::read_serialized_vector(), libMesh::Nemesis_IO_Helper::read_var_names_impl(), MeshFunctionTest::read_variable_info_from_output_data(), libMesh::MeshBase::recalculate_n_partitions(), libMesh::SimplexRefiner::refine_via_edges(), libMesh::StaticCondensationDofMap::reinit(), libMesh::BoundaryInfo::remove_edge_id(), libMesh::BoundaryInfo::remove_node_id(), libMesh::BoundaryInfo::remove_shellface_id(), libMesh::BoundaryInfo::remove_side_id(), libMesh::DistributedMesh::renumber_dof_objects(), libMesh::DistributedMesh::renumber_nodes_and_elements(), LinearElasticityWithContact::residual_and_jacobian(), OverlappingAlgebraicGhostingTest::run_ghosting_test(), OverlappingCouplingGhostingTest::run_sparsity_pattern_test(), scale_mesh_and_plot(), libMesh::DofMap::scatter_constraints(), libMesh::CheckpointIO::select_split_config(), libMesh::GenericProjector< FFunctor, GFunctor, FValue, ProjectionAction >::send_and_insert_dof_values(), libMesh::TransientRBConstruction::set_error_temporal_data(), libMesh::Partitioner::set_interface_node_processor_ids_BFS(), libMesh::Partitioner::set_interface_node_processor_ids_linear(), libMesh::Partitioner::set_interface_node_processor_ids_petscpartitioner(), libMesh::Partitioner::set_node_processor_ids(), libMesh::DofMap::set_nonlocal_dof_objects(), libMesh::Partitioner::set_parent_processor_ids(), libMesh::PetscDMWrapper::set_point_range_in_section(), libMesh::PetscDiffSolver::setup_petsc_data(), libMesh::RBEIMEvaluation::side_distribute_bfs(), libMesh::RBEIMEvaluation::side_gather_bfs(), libMesh::RBEIMConstruction::side_inner_product(), libMesh::Partitioner::single_partition(), libMesh::LaplaceMeshSmoother::smooth(), libMesh::VariationalMeshSmoother::smooth(), libMesh::NoxNonlinearSolver< Number >::solve(), libMesh::ClawSystem::solve_conservation_law(), libMesh::split_mesh(), libMesh::RBEIMConstruction::store_eim_solutions_for_training_set(), libMesh::MeshBase::subdomain_ids(), libMesh::BoundaryInfo::sync(), libMesh::MeshBase::sync_subdomain_name_map(), ConstraintOperatorTest::test1DCoarseningNewNodes(), ConstraintOperatorTest::test1DCoarseningOperator(), MeshFunctionTest::test_bad_gradient_var_with_out_of_mesh_value(), MeshFunctionTest::test_bad_hessian_var_with_out_of_mesh_value(), MeshfunctionDFEM::test_mesh_function_dfem(), MeshfunctionDFEM::test_mesh_function_dfem_grad(), MeshFunctionTest::test_p_level(), ExodusC0PolyhedronTest::test_write_and_read_hexagonal_prism(), ExodusC0PolygonTest::test_write_and_read_pentagon(), DofMapTest::testBadElemFECombo(), SystemsTest::testBlockRestrictedVarNDofs(), BoundaryInfoTest::testBoundaryOnChildrenErrors(), CheckpointIOTest::testC0PolygonCheckpoint(), VolumeTest::testC0PolygonMethods(), CheckpointIOTest::testC0PolyhedronCheckpoint(), VolumeTest::testC0PolyhedronMethods(), ConstraintOperatorTest::testCoreform(), ConnectedComponentsTest::testEdge(), MeshInputTest::testExodusIGASidesets(), MeshTriangulationTest::testFoundCenters(), PointLocatorTest::testLocator(), BoundaryInfoTest::testMesh(), BoundaryMeshSubdomainTest::testPerBoundarySubdomain(), PointLocatorTest::testPlanar(), MeshTriangulationTest::testPoly2TriEdge3ToTri7CenterFixup(), MeshTriangulationTest::testPoly2TriRefinementBase(), SystemsTest::testProjectCubeWithMeshFunction(), SystemsTest::testProjectScalarCoarsening(), BoundaryInfoTest::testRenumber(), BoundaryInfoTest::testSelectiveRenumber(), BoundaryMeshSubdomainTest::testSingleSubdomain(), CheckpointIOTest::testSplitter(), MeshInputTest::testTetgenIO(), MeshTriangulationTest::testTriangulatorInterp(), MeshTriangulationTest::testTriangulatorMeshedHoles(), MeshTriangulationTest::testTriangulatorRoundHole(), MeshSmootherTest::testVariationalSmoother(), libMesh::MeshTools::total_weight(), libMesh::RBConstruction::train_reduced_basis_with_POD(), libMesh::MeshfreeSolutionTransfer::transfer(), libMesh::MeshFunctionSolutionTransfer::transfer(), libMesh::Poly2TriTriangulator::triangulate(), libMesh::RBConstruction::truth_assembly(), libMesh::TransientRBConstruction::truth_assembly(), update_current_local_solution(), libMesh::TransientRBConstruction::update_RB_initial_condition_all_N(), libMesh::RBConstruction::update_RB_system_matrices(), libMesh::TransientRBConstruction::update_RB_system_matrices(), libMesh::TransientRBConstruction::update_residual_terms(), libMesh::RBConstruction::update_residual_terms(), libMesh::MeshTools::volume(), libMesh::STLIO::write(), libMesh::XdrIO::write(), libMesh::NameBasedIO::write(), libMesh::VTKIO::write_nodal_data(), libMesh::RBEIMEvaluation::write_out_interior_basis_functions(), libMesh::RBEIMEvaluation::write_out_node_basis_functions(), libMesh::RBEIMEvaluation::write_out_side_basis_functions(), libMesh::RBEvaluation::write_out_vectors(), libMesh::RBConstruction::write_riesz_representors_to_files(), libMesh::TransientRBConstruction::write_riesz_representors_to_files(), libMesh::System::write_SCALAR_dofs(), libMesh::XdrIO::write_serialized_bcs_helper(), libMesh::System::write_serialized_blocked_dof_objects(), libMesh::XdrIO::write_serialized_connectivity(), libMesh::XdrIO::write_serialized_nodes(), libMesh::XdrIO::write_serialized_nodesets(), libMesh::RBDataSerialization::RBEvaluationSerialization::write_to_file(), libMesh::RBDataSerialization::TransientRBEvaluationSerialization::write_to_file(), libMesh::RBDataSerialization::RBEIMEvaluationSerialization::write_to_file(), and libMesh::RBDataSerialization::RBSCMEvaluationSerialization::write_to_file().

disable_print_counter_info()

void libMesh::ReferenceCounter::disable_print_counter_info ( )

staticinherited

Definition at line 100 of file reference_counter.C.

{
  _enable_print_counter = false;
  return;
}

References libMesh::ReferenceCounter::_enable_print_counter.

enable_print_counter_info()

void libMesh::ReferenceCounter::enable_print_counter_info ( )

staticinherited

Methods to enable/disable the reference counter output from print_info().

Enabled by default.

Definition at line 94 of file reference_counter.C.

{
  _enable_print_counter = true;
  return;
}

References libMesh::ReferenceCounter::_enable_print_counter.

Referenced by libMesh::LibMeshInit::~LibMeshInit().

exact_constraint_enforcement()

template<typename T >

bool libMesh::NonlinearSolver< T >::exact_constraint_enforcement ( )

inlineinherited

Definition at line 403 of file nonlinear_solver.h.

  {
    return _exact_constraint_enforcement;
  }

References libMesh::NonlinearSolver< T >::_exact_constraint_enforcement.

force_new_preconditioner()

template<typename T >

virtual void libMesh::NonlinearSolver< T >::force_new_preconditioner ( )

inlinevirtualinherited

Immediately force a new preconditioner.

Reimplemented in libMesh::PetscNonlinearSolver< T >, and libMesh::PetscNonlinearSolver< Number >.

Definition at line 382 of file nonlinear_solver.h.

{};

get_current_nonlinear_iteration_number()

template<typename T >

virtual unsigned libMesh::NoxNonlinearSolver< T >::get_current_nonlinear_iteration_number ( ) const

inlineoverridevirtual

Returns

The current nonlinear iteration number if called during the solve(), for example by the user-specified residual or Jacobian function.

Note

Not currently implemented for the NoxNonlinearSolver.

Implements libMesh::NonlinearSolver< T >.

Definition at line 112 of file trilinos_nox_nonlinear_solver.h.

  { libmesh_not_implemented(); return 0; }

get_info()

std::string libMesh::ReferenceCounter::get_info ( )

staticinherited

Gets a string containing the reference information.

Definition at line 47 of file reference_counter.C.

{
#if defined(LIBMESH_ENABLE_REFERENCE_COUNTING) && defined(DEBUG)
 
  std::ostringstream oss;
 
  oss << '\n'
      << " ---------------------------------------------------------------------------- \n"
      << "| Reference count information                                                |\n"
      << " ---------------------------------------------------------------------------- \n";
 
  for (const auto & [name, cd] : _counts)
    oss << "| " << name << " reference count information:\n"
        << "|  Creations:    " << cd.first    << '\n'
        << "|  Destructions: " << cd.second << '\n';
 
  oss << " ---------------------------------------------------------------------------- \n";
 
  return oss.str();
 
#else
 
  return "";
 
#endif
}

References libMesh::ReferenceCounter::_counts.

Referenced by libMesh::ReferenceCounter::print_info().

get_total_linear_iterations()

template<typename T >

int libMesh::NoxNonlinearSolver< T >::get_total_linear_iterations ( )

overridevirtual

Get the total number of linear iterations done in the last solve.

Implements libMesh::NonlinearSolver< T >.

Definition at line 438 of file trilinos_nox_nonlinear_solver.C.

{
  return _n_linear_iterations;
}

increment_constructor_count()

void libMesh::ReferenceCounter::increment_constructor_count ( const std::string &  name )

inlineprotectednoexceptinherited

Increments the construction counter.

Should be called in the constructor of any derived class that will be reference counted.

Definition at line 183 of file reference_counter.h.

{
  libmesh_try
  {
    Threads::spin_mutex::scoped_lock lock(Threads::spin_mtx);
    std::pair<unsigned int, unsigned int> & p = _counts[name];
    p.first++;
  }
  libmesh_catch (...)
  {
    auto stream = libMesh::err.get();
    stream->exceptions(stream->goodbit); // stream must not throw
    libMesh::err << "Encountered unrecoverable error while calling "
                 << "ReferenceCounter::increment_constructor_count() "
                 << "for a(n) " << name << " object." << std::endl;
    std::terminate();
  }
}

References libMesh::err, libMesh::BasicOStreamProxy< charT, traits >::get(), and libMesh::Threads::spin_mtx.

Referenced by libMesh::ReferenceCountedObject< T >::ReferenceCountedObject(), libMesh::ReferenceCountedObject< T >::ReferenceCountedObject(), and libMesh::ReferenceCountedObject< T >::ReferenceCountedObject().

increment_destructor_count()

void libMesh::ReferenceCounter::increment_destructor_count ( const std::string &  name )

inlineprotectednoexceptinherited

Increments the destruction counter.

Should be called in the destructor of any derived class that will be reference counted.

Definition at line 207 of file reference_counter.h.

{
  libmesh_try
  {
    Threads::spin_mutex::scoped_lock lock(Threads::spin_mtx);
    std::pair<unsigned int, unsigned int> & p = _counts[name];
    p.second++;
  }
  libmesh_catch (...)
  {
    auto stream = libMesh::err.get();
    stream->exceptions(stream->goodbit); // stream must not throw
    libMesh::err << "Encountered unrecoverable error while calling "
                 << "ReferenceCounter::increment_destructor_count() "
                 << "for a(n) " << name << " object." << std::endl;
    std::terminate();
  }
}

References libMesh::err, libMesh::BasicOStreamProxy< charT, traits >::get(), and libMesh::Threads::spin_mtx.

Referenced by libMesh::ReferenceCountedObject< T >::~ReferenceCountedObject().

init()

template<typename T >

void libMesh::NoxNonlinearSolver< T >::init ( const char *  name = nullptr )

overridevirtual

Initialize data structures if not done so already.

Implements libMesh::NonlinearSolver< T >.

Definition at line 284 of file trilinos_nox_nonlinear_solver.C.

{
  if (!this->initialized())
    _interface = new Problem_Interface(this);
}

References libMesh::initialized().

initialized()

template<typename T >

bool libMesh::NonlinearSolver< T >::initialized ( ) const

inlineinherited

Returns

true if the data structures are initialized, false otherwise.

Definition at line 83 of file nonlinear_solver.h.

{ return _is_initialized; }

References libMesh::NonlinearSolver< T >::_is_initialized.

n_objects()

static unsigned int libMesh::ReferenceCounter::n_objects ( )

inlinestaticinherited

Prints the number of outstanding (created, but not yet destroyed) objects.

Definition at line 85 of file reference_counter.h.

  { return _n_objects; }

References libMesh::ReferenceCounter::_n_objects.

Referenced by libMesh::LibMeshInit::~LibMeshInit().

n_processors()

processor_id_type libMesh::ParallelObject::n_processors ( ) const

inlineinherited

Returns

The number of processors in the group.

Definition at line 103 of file parallel_object.h.

  {
    processor_id_type returnval =
      cast_int<processor_id_type>(_communicator.size());
    libmesh_assert(returnval); // We never have an empty comm
    return returnval;
  }

References libMesh::ParallelObject::_communicator, libMesh::libmesh_assert(), and libMesh::Parallel::Communicator::size().

Referenced by libMesh::Partitioner::_find_global_index_by_pid_map(), libMesh::BoundaryInfo::_find_id_maps(), libMesh::DofMap::add_constraints_to_send_list(), libMesh::PetscDMWrapper::add_dofs_to_section(), libMesh::DistributedMesh::add_elem(), libMesh::DistributedMesh::add_node(), libMesh::System::add_vector(), libMesh::LaplaceMeshSmoother::allgather_graph(), libMesh::DofMap::allgather_recursive_constraints(), libMesh::FEMSystem::assembly(), libMesh::Nemesis_IO::assert_symmetric_cmaps(), libMesh::Partitioner::assign_partitioning(), libMesh::AztecLinearSolver< T >::AztecLinearSolver(), libMesh::Partitioner::build_graph(), libMesh::EquationSystems::build_parallel_elemental_solution_vector(), libMesh::DistributedMesh::clear(), libMesh::DistributedMesh::clear_elems(), libMesh::Nemesis_IO_Helper::compute_border_node_ids(), libMesh::Nemesis_IO_Helper::construct_nemesis_filename(), libMesh::UnstructuredMesh::copy_nodes_and_elements(), libMesh::ExodusII_IO::copy_scalar_solution(), libMesh::Nemesis_IO::copy_scalar_solution(), libMesh::UnstructuredMesh::create_pid_mesh(), libMesh::MeshTools::create_processor_bounding_box(), libMesh::DistributedMesh::DistributedMesh(), libMesh::EnsightIO::EnsightIO(), libMesh::RBEIMEvaluation::gather_bfs(), libMesh::MeshBase::get_info(), libMesh::StaticCondensation::init(), libMesh::SystemSubsetBySubdomain::init(), libMesh::PetscDMWrapper::init_petscdm(), libMesh::ExodusII_IO_Helper::initialize(), libMesh::Nemesis_IO_Helper::initialize(), libMesh::DistributedMesh::insert_elem(), libMesh::NumericVector< T >::is_effectively_ghosted(), libMesh::NumericVector< T >::is_effectively_serial(), libMesh::MeshTools::libmesh_assert_contiguous_dof_ids(), libMesh::MeshTools::libmesh_assert_parallel_consistent_new_node_procids(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Elem >(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Node >(), libMesh::MeshTools::libmesh_assert_topology_consistent_procids< Node >(), libMesh::MeshTools::libmesh_assert_valid_boundary_ids(), libMesh::MeshTools::libmesh_assert_valid_dof_ids(), libMesh::MeshTools::libmesh_assert_valid_neighbors(), libMesh::MeshTools::libmesh_assert_valid_refinement_flags(), libMesh::MeshBase::n_active_elem_on_proc(), libMesh::DofMap::n_dofs_per_processor(), libMesh::MeshBase::n_elem_on_proc(), libMesh::MeshBase::n_nodes_on_proc(), libMesh::RBEIMEvaluation::node_gather_bfs(), libMesh::MeshBase::partition(), libMesh::Partitioner::partition(), libMesh::Partitioner::partition_unpartitioned_elements(), libMesh::Partitioner::partition_unpartitioned_elements(), libMesh::MeshBase::print_constraint_rows(), libMesh::DofMap::print_dof_constraints(), libMesh::Nemesis_IO::read(), libMesh::CheckpointIO::read(), libMesh::NameBasedIO::read(), libMesh::CheckpointIO::read_connectivity(), libMesh::XdrIO::read_header(), libMesh::CheckpointIO::read_nodes(), libMesh::System::read_parallel_data(), libMesh::System::read_SCALAR_dofs(), libMesh::System::read_serialized_blocked_dof_objects(), libMesh::System::read_serialized_vector(), libMesh::DistributedMesh::renumber_dof_objects(), libMesh::Partitioner::repartition(), OverlappingFunctorTest::run_partitioner_test(), libMesh::DofMap::scatter_constraints(), libMesh::DistributedMesh::set_next_unique_id(), libMesh::DofMap::set_nonlocal_dof_objects(), libMesh::PetscDMWrapper::set_point_range_in_section(), WriteVecAndScalar::setupTests(), libMesh::RBEIMEvaluation::side_gather_bfs(), DistributedMeshTest::testRemoteElemError(), CheckpointIOTest::testSplitter(), libMesh::DistributedMesh::update_parallel_id_counts(), libMesh::GMVIO::write_binary(), libMesh::GMVIO::write_discontinuous_gmv(), libMesh::ExodusII_IO_Helper::write_nodal_coordinates(), libMesh::ExodusII_IO::write_nodal_data(), libMesh::VTKIO::write_nodal_data(), libMesh::System::write_parallel_data(), libMesh::System::write_SCALAR_dofs(), libMesh::XdrIO::write_serialized_bcs_helper(), libMesh::System::write_serialized_blocked_dof_objects(), libMesh::XdrIO::write_serialized_connectivity(), libMesh::XdrIO::write_serialized_nodes(), and libMesh::XdrIO::write_serialized_nodesets().

print_converged_reason()

template<typename T >

virtual void libMesh::NonlinearSolver< T >::print_converged_reason ( )

inlinevirtualinherited

Prints a useful message about why the latest nonlinear solve con(di)verged.

Reimplemented in libMesh::PetscNonlinearSolver< T >, and libMesh::PetscNonlinearSolver< Number >.

Definition at line 109 of file nonlinear_solver.h.

{ libmesh_not_implemented(); }

print_info()

void libMesh::ReferenceCounter::print_info ( std::ostream &  out_stream = libMesh::out )

staticinherited

Prints the reference information, by default to libMesh::out.

Definition at line 81 of file reference_counter.C.

{
  if (_enable_print_counter)
    out_stream << ReferenceCounter::get_info();
}

References libMesh::ReferenceCounter::_enable_print_counter, and libMesh::ReferenceCounter::get_info().

Referenced by libMesh::LibMeshInit::~LibMeshInit().

processor_id()

processor_id_type libMesh::ParallelObject::processor_id ( ) const

inlineinherited

Returns

The rank of this processor in the group.

Definition at line 114 of file parallel_object.h.

  { return cast_int<processor_id_type>(_communicator.rank()); }

References libMesh::ParallelObject::_communicator, and libMesh::Parallel::Communicator::rank().

Referenced by libMesh::BoundaryInfo::_find_id_maps(), libMesh::PetscDMWrapper::add_dofs_to_section(), libMesh::DistributedMesh::add_elem(), libMesh::BoundaryInfo::add_elements(), libMesh::DistributedMesh::add_node(), libMesh::MeshTools::Modification::all_tri(), libMesh::FEMSystem::assembly(), libMesh::Nemesis_IO::assert_symmetric_cmaps(), libMesh::Partitioner::assign_partitioning(), libMesh::Nemesis_IO_Helper::build_element_and_node_maps(), libMesh::Partitioner::build_graph(), libMesh::InfElemBuilder::build_inf_elem(), libMesh::BoundaryInfo::build_node_list_from_side_list(), libMesh::EquationSystems::build_parallel_elemental_solution_vector(), libMesh::EquationSystems::build_parallel_solution_vector(), libMesh::MeshFunction::check_found_elem(), libMesh::DistributedMesh::clear(), libMesh::DistributedMesh::clear_elems(), libMesh::ExodusII_IO_Helper::close(), libMesh::Nemesis_IO_Helper::compute_border_node_ids(), libMesh::Nemesis_IO_Helper::compute_communication_map_parameters(), libMesh::Nemesis_IO_Helper::compute_internal_and_border_elems_and_internal_nodes(), libMesh::RBConstruction::compute_max_error_bound(), libMesh::Nemesis_IO_Helper::compute_node_communication_maps(), libMesh::Nemesis_IO_Helper::compute_num_global_elem_blocks(), libMesh::Nemesis_IO_Helper::compute_num_global_nodesets(), libMesh::Nemesis_IO_Helper::compute_num_global_sidesets(), libMesh::Nemesis_IO_Helper::construct_nemesis_filename(), libMesh::ExodusII_IO::copy_elemental_solution(), libMesh::ExodusII_IO::copy_nodal_solution(), libMesh::ExodusII_IO::copy_scalar_solution(), libMesh::Nemesis_IO::copy_scalar_solution(), libMesh::MeshTools::correct_node_proc_ids(), libMesh::ExodusII_IO_Helper::create(), libMesh::MeshCommunication::delete_remote_elements(), libMesh::DistributedMesh::DistributedMesh(), libMesh::DistributedMesh::DistributedMesh(), libMesh::DofMapBase::end_dof(), libMesh::DofMapBase::end_old_dof(), libMesh::EnsightIO::EnsightIO(), libMesh::GenericProjector< FFunctor, GFunctor, FValue, ProjectionAction >::SubFunctor::find_dofs_to_send(), libMesh::UnstructuredMesh::find_neighbors(), libMesh::DofMapBase::first_dof(), libMesh::DofMapBase::first_old_dof(), libMesh::RBEIMEvaluation::gather_bfs(), libMesh::Nemesis_IO_Helper::get_cmap_params(), libMesh::Nemesis_IO_Helper::get_eb_info_global(), libMesh::Nemesis_IO_Helper::get_elem_cmap(), libMesh::Nemesis_IO_Helper::get_elem_map(), libMesh::MeshBase::get_info(), libMesh::Nemesis_IO_Helper::get_init_global(), libMesh::Nemesis_IO_Helper::get_init_info(), libMesh::RBEIMEvaluation::get_interior_basis_functions_as_vecs(), libMesh::Nemesis_IO_Helper::get_loadbal_param(), libMesh::DofMap::get_local_constraints(), libMesh::MeshBase::get_local_constraints(), libMesh::Nemesis_IO_Helper::get_node_cmap(), libMesh::Nemesis_IO_Helper::get_node_map(), libMesh::Nemesis_IO_Helper::get_ns_param_global(), libMesh::Nemesis_IO_Helper::get_ss_param_global(), libMesh::SparsityPattern::Build::handle_vi_vj(), libMesh::LaplaceMeshSmoother::init(), libMesh::SystemSubsetBySubdomain::init(), HeatSystem::init_data(), libMesh::ExodusII_IO_Helper::initialize(), libMesh::ExodusII_IO_Helper::initialize_element_variables(), libMesh::ExodusII_IO_Helper::initialize_global_variables(), libMesh::ExodusII_IO_Helper::initialize_nodal_variables(), libMesh::DistributedMesh::insert_elem(), libMesh::MeshTools::Modification::interpolate_surface(), libMesh::SparsityPattern::Build::join(), libMesh::RBEvaluation::legacy_write_offline_data_to_files(), libMesh::RBSCMEvaluation::legacy_write_offline_data_to_files(), libMesh::TransientRBEvaluation::legacy_write_offline_data_to_files(), libMesh::MeshTools::libmesh_assert_consistent_distributed(), libMesh::MeshTools::libmesh_assert_consistent_distributed_nodes(), libMesh::MeshTools::libmesh_assert_contiguous_dof_ids(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Elem >(), libMesh::MeshTools::libmesh_assert_valid_neighbors(), libMesh::DistributedMesh::libmesh_assert_valid_parallel_object_ids(), main(), AugmentSparsityOnInterface::mesh_reinit(), libMesh::TriangulatorInterface::MeshedHole::MeshedHole(), libMesh::MeshBase::n_active_local_elem(), libMesh::BoundaryInfo::n_boundary_conds(), libMesh::MeshTools::n_connected_components(), libMesh::MeshBase::n_constraint_rows(), libMesh::BoundaryInfo::n_edge_conds(), libMesh::DofMapBase::n_local_dofs(), libMesh::MeshBase::n_local_elem(), libMesh::MeshBase::n_local_nodes(), libMesh::BoundaryInfo::n_nodeset_conds(), libMesh::BoundaryInfo::n_shellface_conds(), libMesh::RBEIMEvaluation::node_gather_bfs(), libMesh::DistributedMesh::own_node(), libMesh::BoundaryInfo::parallel_sync_node_ids(), libMesh::BoundaryInfo::parallel_sync_side_ids(), libMesh::MeshBase::print_constraint_rows(), libMesh::DofMap::print_dof_constraints(), libMesh::DofMap::process_mesh_constraint_rows(), libMesh::Nemesis_IO_Helper::put_cmap_params(), libMesh::Nemesis_IO_Helper::put_elem_cmap(), libMesh::Nemesis_IO_Helper::put_elem_map(), libMesh::Nemesis_IO_Helper::put_loadbal_param(), libMesh::Nemesis_IO_Helper::put_node_cmap(), libMesh::Nemesis_IO_Helper::put_node_map(), libMesh::XdrIO::read(), libMesh::Nemesis_IO::read(), libMesh::CheckpointIO::read(), libMesh::NameBasedIO::read(), libMesh::EquationSystems::read(), libMesh::EquationSystems::read(), libMesh::ExodusII_IO_Helper::read_elem_num_map(), libMesh::ExodusII_IO_Helper::read_global_values(), libMesh::CheckpointIO::read_header(), libMesh::ExodusII_IO::read_header(), libMesh::System::read_header(), libMesh::XdrIO::read_header(), libMesh::DynaIO::read_mesh(), libMesh::ExodusII_IO_Helper::read_node_num_map(), libMesh::System::read_parallel_data(), libMesh::RBConstruction::read_riesz_representors_from_files(), libMesh::TransientRBConstruction::read_riesz_representors_from_files(), libMesh::System::read_SCALAR_dofs(), libMesh::XdrIO::read_serialized_bc_names(), libMesh::XdrIO::read_serialized_bcs_helper(), libMesh::System::read_serialized_blocked_dof_objects(), libMesh::XdrIO::read_serialized_connectivity(), libMesh::System::read_serialized_data(), libMesh::XdrIO::read_serialized_nodes(), libMesh::XdrIO::read_serialized_nodesets(), libMesh::XdrIO::read_serialized_subdomain_names(), libMesh::System::read_serialized_vector(), libMesh::System::read_serialized_vectors(), libMesh::Nemesis_IO_Helper::read_var_names_impl(), libMesh::SimplexRefiner::refine_via_edges(), libMesh::SimplexRefiner::refine_via_edges(), libMesh::StaticCondensationDofMap::reinit(), libMesh::DistributedMesh::renumber_dof_objects(), libMesh::DistributedMesh::renumber_nodes_and_elements(), libMesh::DofMap::scatter_constraints(), libMesh::CheckpointIO::select_split_config(), libMesh::DistributedMesh::set_next_unique_id(), libMesh::DofMap::set_nonlocal_dof_objects(), libMesh::PetscDMWrapper::set_point_range_in_section(), libMesh::RBEIMEvaluation::side_gather_bfs(), MeshFunctionTest::test_bad_gradient_var_with_out_of_mesh_value(), MeshFunctionTest::test_bad_hessian_var_with_out_of_mesh_value(), ExodusTest< elem_type >::test_read_gold(), ExodusTest< elem_type >::test_write(), ExodusC0PolyhedronTest::test_write_and_read_hexagonal_prism(), ExodusC0PolygonTest::test_write_and_read_pentagon(), MeshInputTest::testAbaqusRead(), MeshInputTest::testBadGmsh(), BoundaryInfoTest::testBoundaryIDs(), MeshInputTest::testCopyElementSolutionImpl(), MeshInputTest::testCopyElementVectorImpl(), MeshInputTest::testCopyNodalSolutionImpl(), DefaultCouplingTest::testCoupling(), PointNeighborCouplingTest::testCoupling(), MeshInputTest::testDynaFileMappings(), MeshInputTest::testDynaNoSplines(), MeshInputTest::testDynaReadElem(), MeshInputTest::testDynaReadPatch(), MeshInputTest::testExodusFileMappings(), MeshInputTest::testExodusIGASidesets(), MeshInputTest::testExodusWriteElementDataFromDiscontinuousNodalData(), MeshInputTest::testGmshBCIDOverlap(), MeshInputTest::testGoodGmsh(), MeshInputTest::testGoodSTL(), MeshInputTest::testGoodSTLBinary(), BoundaryInfoTest::testInternalBoundary(), MeshInputTest::testLowOrderEdgeBlocks(), BoundaryMeshSubdomainTest::testPerBoundarySubdomain(), SystemsTest::testProjectMatrix3D(), BoundaryInfoTest::testShellFaceConstraints(), MeshInputTest::testSingleElementImpl(), BoundaryMeshSubdomainTest::testSingleSubdomain(), WriteVecAndScalar::testSolution(), CheckpointIOTest::testSplitter(), MeshInputTest::testTetgenIO(), MeshSmootherTest::testVariationalSmoother(), libMesh::MeshTools::total_weight(), libMesh::NetGenMeshInterface::triangulate(), libMesh::Parallel::Packing< Elem * >::unpack(), libMesh::Parallel::Packing< Node * >::unpack(), libMesh::DistributedMesh::update_parallel_id_counts(), libMesh::DTKAdapter::update_variable_values(), libMesh::MeshTools::volume(), libMesh::STLIO::write(), libMesh::XdrIO::write(), libMesh::NameBasedIO::write(), libMesh::CheckpointIO::write(), libMesh::EquationSystems::write(), libMesh::EquationSystems::write(), libMesh::GMVIO::write_discontinuous_gmv(), libMesh::ExodusII_IO::write_element_data(), libMesh::ExodusII_IO::write_element_data_from_discontinuous_nodal_data(), libMesh::ExodusII_IO_Helper::write_element_values(), libMesh::ExodusII_IO_Helper::write_element_values_element_major(), libMesh::ExodusII_IO_Helper::write_elements(), libMesh::ExodusII_IO_Helper::write_elemset_data(), libMesh::ExodusII_IO_Helper::write_elemsets(), libMesh::ExodusII_IO::write_global_data(), libMesh::ExodusII_IO_Helper::write_global_values(), libMesh::System::write_header(), libMesh::ExodusII_IO::write_information_records(), libMesh::ExodusII_IO_Helper::write_information_records(), libMesh::ExodusII_IO_Helper::write_nodal_coordinates(), libMesh::ExodusII_IO::write_nodal_data(), libMesh::VTKIO::write_nodal_data(), libMesh::UCDIO::write_nodal_data(), libMesh::ExodusII_IO::write_nodal_data_common(), libMesh::ExodusII_IO::write_nodal_data_discontinuous(), libMesh::ExodusII_IO_Helper::write_nodal_values(), libMesh::ExodusII_IO_Helper::write_nodeset_data(), libMesh::ExodusII_IO_Helper::write_nodesets(), libMesh::Nemesis_IO_Helper::write_nodesets(), libMesh::RBEIMEvaluation::write_out_interior_basis_functions(), libMesh::RBEIMEvaluation::write_out_node_basis_functions(), libMesh::RBEIMEvaluation::write_out_side_basis_functions(), write_output_solvedata(), libMesh::System::write_parallel_data(), libMesh::RBConstruction::write_riesz_representors_to_files(), libMesh::System::write_SCALAR_dofs(), libMesh::XdrIO::write_serialized_bc_names(), libMesh::XdrIO::write_serialized_bcs_helper(), libMesh::System::write_serialized_blocked_dof_objects(), libMesh::XdrIO::write_serialized_connectivity(), libMesh::System::write_serialized_data(), libMesh::XdrIO::write_serialized_nodes(), libMesh::XdrIO::write_serialized_nodesets(), libMesh::XdrIO::write_serialized_subdomain_names(), libMesh::System::write_serialized_vector(), libMesh::System::write_serialized_vectors(), libMesh::ExodusII_IO_Helper::write_sideset_data(), libMesh::ExodusII_IO_Helper::write_sidesets(), libMesh::Nemesis_IO_Helper::write_sidesets(), libMesh::ExodusII_IO::write_timestep(), libMesh::ExodusII_IO_Helper::write_timestep(), and libMesh::ExodusII_IO::write_timestep_discontinuous().

reuse_preconditioner()

template<typename T >

bool libMesh::NonlinearSolver< T >::reuse_preconditioner ( ) const

virtualinherited

Get the reuse_preconditioner flag.

Reimplemented in libMesh::PetscNonlinearSolver< T >, and libMesh::PetscNonlinearSolver< Number >.

Definition at line 88 of file nonlinear_solver.C.

{
  libmesh_not_implemented();
}

reuse_preconditioner_max_linear_its()

template<typename T >

unsigned int libMesh::NonlinearSolver< T >::reuse_preconditioner_max_linear_its ( ) const

virtualinherited

Get the reuse_preconditioner_max_linear_its parameter.

Reimplemented in libMesh::PetscNonlinearSolver< T >, and libMesh::PetscNonlinearSolver< Number >.

Definition at line 100 of file nonlinear_solver.C.

{
  libmesh_not_implemented();
}

set_exact_constraint_enforcement()

template<typename T >

virtual void libMesh::NonlinearSolver< T >::set_exact_constraint_enforcement ( bool  enable )

inlinevirtualinherited

Enable (or disable; it is true by default) exact enforcement of constraints at the solver level, correcting any constrained DoF coefficients in current_local_solution as well as applying nonlinear residual and Jacobian terms based on constraint equations.

This is probably only safe to disable if user code is setting nonlinear residual and Jacobian terms based on constraint equations at an element-by-element level, by combining the asymmetric_constraint_rows option with the residual_constrain_element_vector processing option in DofMap.

Definition at line 398 of file nonlinear_solver.h.

  {
    _exact_constraint_enforcement = enable;
  }

References libMesh::NonlinearSolver< T >::_exact_constraint_enforcement.

set_reuse_preconditioner()

template<typename T >

void libMesh::NonlinearSolver< T >::set_reuse_preconditioner ( bool  reuse )

virtualinherited

Set the reuse preconditioner flag.

Definition at line 94 of file nonlinear_solver.C.

{
  _reuse_preconditioner = reuse;
}

set_reuse_preconditioner_max_linear_its()

template<typename T >

void libMesh::NonlinearSolver< T >::set_reuse_preconditioner_max_linear_its ( unsigned int  i )

virtualinherited

Set the reuse_preconditioner_max_linear_its parameter.

Definition at line 106 of file nonlinear_solver.C.

{
  _reuse_preconditioner_max_linear_its = i;
}

set_solver_configuration()

template<typename T >

void libMesh::NonlinearSolver< T >::set_solver_configuration ( SolverConfiguration &  solver_configuration )

inherited

Set the solver configuration object.

Definition at line 82 of file nonlinear_solver.C.

{
  _solver_configuration = &solver_configuration;
}

solve()

template<typename T >

std::pair< unsigned int, Real > libMesh::NoxNonlinearSolver< T >::solve ( SparseMatrix< T > &  , NumericVector< T > &  x_in, NumericVector< T > &  , const double  , const unsigned int    )

overridevirtual

Call the Nox solver.

It calls the method below, using the same matrix for the system and preconditioner matrices.

Implements libMesh::NonlinearSolver< T >.

Definition at line 296 of file trilinos_nox_nonlinear_solver.C.

{
  this->init ();
 
  if (this->user_presolve)
    this->user_presolve(this->system());
 
  EpetraVector<T> * x_epetra = cast_ptr<EpetraVector<T> *>(&x_in);
  // Creating a Teuchos::RCP as they do in NOX examples does not work here - we get some invalid memory references
  // thus we make a local copy
  NOX::Epetra::Vector x(*x_epetra->vec());
 
  Teuchos::RCP<Teuchos::ParameterList> nlParamsPtr = Teuchos::rcp(new Teuchos::ParameterList);
  Teuchos::ParameterList & nlParams = *(nlParamsPtr.get());
  nlParams.set("Nonlinear Solver", "Line Search Based");
 
  //print params
  Teuchos::ParameterList & printParams = nlParams.sublist("Printing");
  printParams.set("Output Precision", 3);
  printParams.set("Output Processor", 0);
  printParams.set("Output Information",
                  NOX::Utils::OuterIteration +
                  NOX::Utils::OuterIterationStatusTest +
                  NOX::Utils::InnerIteration +
                  NOX::Utils::LinearSolverDetails +
                  NOX::Utils::Parameters +
                  NOX::Utils::Details +
                  NOX::Utils::Warning);
 
  Teuchos::ParameterList & dirParams = nlParams.sublist("Direction");
  dirParams.set("Method", "Newton");
  Teuchos::ParameterList & newtonParams = dirParams.sublist("Newton");
  newtonParams.set("Forcing Term Method", "Constant");
 
  Teuchos::ParameterList & lsParams = newtonParams.sublist("Linear Solver");
  lsParams.set("Aztec Solver", "GMRES");
  lsParams.set("Max Iterations", static_cast<int>(this->max_linear_iterations));
  lsParams.set("Tolerance", this->initial_linear_tolerance);
  lsParams.set("Output Frequency", 1);
  lsParams.set("Size of Krylov Subspace", 1000);
 
  //create linear system
  Teuchos::RCP<NOX::Epetra::Interface::Required> iReq(_interface);
  Teuchos::RCP<NOX::Epetra::LinearSystemAztecOO> linSys;
  Teuchos::RCP<Epetra_Operator> pc;
 
  if (this->jacobian || this->jacobian_object || this->residual_and_jacobian_object)
    {
      if (this->_preconditioner)
        {
          // PJNFK
          lsParams.set("Preconditioner", "User Defined");
 
          TrilinosPreconditioner<Number> * trilinos_pc =
            cast_ptr<TrilinosPreconditioner<Number> *>(this->_preconditioner);
          pc = Teuchos::rcp(trilinos_pc);
 
          Teuchos::RCP<NOX::Epetra::Interface::Preconditioner> iPrec(_interface);
          linSys = Teuchos::rcp(new NOX::Epetra::LinearSystemAztecOO(printParams, lsParams, iReq, iPrec, pc, x));
        }
      else
        {
          lsParams.set("Preconditioner", "None");
          //      lsParams.set("Preconditioner", "Ifpack");
          //      lsParams.set("Preconditioner", "AztecOO");
 
          // full jacobian
          NonlinearImplicitSystem & sys = _interface->_solver->system();
          EpetraMatrix<Number> & jacSys = *cast_ptr<EpetraMatrix<Number> *>(sys.matrix);
          Teuchos::RCP<Epetra_RowMatrix> jacMat = Teuchos::rcp(jacSys.mat());
 
          Teuchos::RCP<NOX::Epetra::Interface::Jacobian> iJac(_interface);
          linSys = Teuchos::rcp(new NOX::Epetra::LinearSystemAztecOO(printParams, lsParams, iReq, iJac, jacMat, x));
        }
    }
  else
    {
      // matrix free
      Teuchos::RCP<NOX::Epetra::MatrixFree> MF = Teuchos::rcp(new NOX::Epetra::MatrixFree(printParams, iReq, x));
 
      Teuchos::RCP<NOX::Epetra::Interface::Jacobian> iJac(MF);
      linSys = Teuchos::rcp(new NOX::Epetra::LinearSystemAztecOO(printParams, lsParams, iReq, iJac, MF, x));
    }
 
  //create group
  Teuchos::RCP<NOX::Epetra::Group> grpPtr = Teuchos::rcp(new NOX::Epetra::Group(printParams, iReq, x, linSys));
  NOX::Epetra::Group & grp = *(grpPtr.get());
 
  if (this->relative_step_tolerance != 0) // 0 is default value
    libmesh_warning("Setting the relative step tolerance is currently not supported with the trilinos nox nonlinear solver.");
 
  Teuchos::RCP<NOX::StatusTest::NormF> absresid =
    Teuchos::rcp(new NOX::StatusTest::NormF(this->absolute_residual_tolerance, NOX::StatusTest::NormF::Unscaled));
  Teuchos::RCP<NOX::StatusTest::NormF> relresid =
    Teuchos::rcp(new NOX::StatusTest::NormF(grp, this->relative_residual_tolerance));
  Teuchos::RCP<NOX::StatusTest::MaxIters> maxiters =
    Teuchos::rcp(new NOX::StatusTest::MaxIters(this->max_nonlinear_iterations));
  Teuchos::RCP<NOX::StatusTest::FiniteValue> finiteval =
    Teuchos::rcp(new NOX::StatusTest::FiniteValue());
  Teuchos::RCP<NOX::StatusTest::NormUpdate> normupdate =
    Teuchos::rcp(new NOX::StatusTest::NormUpdate(this->absolute_step_tolerance));
  Teuchos::RCP<NOX::StatusTest::Combo> combo =
    Teuchos::rcp(new NOX::StatusTest::Combo(NOX::StatusTest::Combo::OR));
  combo->addStatusTest(absresid);
  combo->addStatusTest(relresid);
  combo->addStatusTest(maxiters);
  combo->addStatusTest(finiteval);
  combo->addStatusTest(normupdate);
 
  Teuchos::RCP<Teuchos::ParameterList> finalPars = nlParamsPtr;
 
  Teuchos::RCP<NOX::Solver::Generic> solver = NOX::Solver::buildSolver(grpPtr, combo, nlParamsPtr);
  NOX::StatusTest::StatusType status = solver->solve();
  this->converged = (status == NOX::StatusTest::Converged);
 
  const NOX::Epetra::Group & finalGroup = dynamic_cast<const NOX::Epetra::Group &>(solver->getSolutionGroup());
  const NOX::Epetra::Vector & noxFinalSln = dynamic_cast<const NOX::Epetra::Vector &>(finalGroup.getX());
 
  *x_epetra->vec() = noxFinalSln.getEpetraVector();
  x_in.close();
 
  Real residual_norm = finalGroup.getNormF();
  unsigned int total_iters = solver->getNumIterations();
  _n_linear_iterations = finalPars->sublist("Direction").sublist("Newton").sublist("Linear Solver").sublist("Output").get("Total Number of Linear Iterations", -1);
 
  // do not let Trilinos to deallocate what we allocated
  pc.release();
  iReq.release();
 
  return std::make_pair(total_iters, residual_norm);
}

References libMesh::NumericVector< T >::close(), libMesh::EpetraMatrix< T >::mat(), libMesh::ImplicitSystem::matrix, libMesh::Real, libMesh::NonlinearImplicitSystem::system(), and libMesh::EpetraVector< T >::vec().

system() [1/2]

template<typename T >

sys_type & libMesh::NonlinearSolver< T >::system ( )

inlineinherited

Returns

A writable reference to the system we are solving.

Definition at line 278 of file nonlinear_solver.h.

{ return _system; }

References libMesh::NonlinearSolver< T >::_system.

system() [2/2]

template<typename T >

const sys_type & libMesh::NonlinearSolver< T >::system ( ) const

inlineinherited

Returns

A constant reference to the system we are solving.

Definition at line 273 of file nonlinear_solver.h.

{ return _system; }

References libMesh::NonlinearSolver< T >::_system.

Referenced by libMesh::Problem_Interface::computeJacobian(), libMesh::Problem_Interface::computePreconditioner(), libMesh::libmesh_petsc_snes_postcheck(), and libMesh::NoxNonlinearSolver< Number >::solve().

Member Data Documentation

_communicator

const Parallel::Communicator& libMesh::ParallelObject::_communicator

protectedinherited

Definition at line 120 of file parallel_object.h.

Referenced by libMesh::EquationSystems::build_parallel_elemental_solution_vector(), libMesh::EquationSystems::build_parallel_solution_vector(), libMesh::StaticCondensation::close(), libMesh::ParallelObject::comm(), libMesh::CondensedEigenSystem::initialize_condensed_matrices(), libMesh::ParallelObject::n_processors(), libMesh::ParallelObject::operator=(), libMesh::ParallelObject::processor_id(), libMesh::BoundaryInfo::regenerate_id_sets(), libMesh::StaticCondensationDofMap::reinit(), and libMesh::BoundaryInfo::synchronize_global_id_set().

_counts

ReferenceCounter::Counts libMesh::ReferenceCounter::_counts

staticprotectedinherited

Actually holds the data.

Definition at line 124 of file reference_counter.h.

Referenced by libMesh::ReferenceCounter::get_info().

_enable_print_counter

bool libMesh::ReferenceCounter::_enable_print_counter = true

staticprotectedinherited

Flag to control whether reference count information is printed when print_info is called.

Definition at line 143 of file reference_counter.h.

Referenced by libMesh::ReferenceCounter::disable_print_counter_info(), libMesh::ReferenceCounter::enable_print_counter_info(), and libMesh::ReferenceCounter::print_info().

_exact_constraint_enforcement

template<typename T >

bool libMesh::NonlinearSolver< T >::_exact_constraint_enforcement

protectedinherited

Whether we should enforce exact constraints globally during a solve.

Definition at line 418 of file nonlinear_solver.h.

Referenced by libMesh::Problem_Interface::computeJacobian(), libMesh::NonlinearSolver< T >::exact_constraint_enforcement(), and libMesh::NonlinearSolver< T >::set_exact_constraint_enforcement().

_interface

template<typename T >

Problem_Interface* libMesh::NoxNonlinearSolver< T >::_interface

private

Solver interface.

Definition at line 125 of file trilinos_nox_nonlinear_solver.h.

_is_initialized

template<typename T >

bool libMesh::NonlinearSolver< T >::_is_initialized

protectedinherited

Flag indicating if the data structures have been initialized.

Definition at line 433 of file nonlinear_solver.h.

Referenced by libMesh::NonlinearSolver< T >::initialized().

_mutex

Threads::spin_mutex libMesh::ReferenceCounter::_mutex

staticprotectedinherited

Mutual exclusion object to enable thread-safe reference counting.

Definition at line 137 of file reference_counter.h.

_n_linear_iterations

template<typename T >

int libMesh::NoxNonlinearSolver< T >::_n_linear_iterations

private

Stores the total number of linear iterations from the last solve.

Definition at line 130 of file trilinos_nox_nonlinear_solver.h.

_n_objects

Threads::atomic< unsigned int > libMesh::ReferenceCounter::_n_objects

staticprotectedinherited

The number of objects.

Print the reference count information when the number returns to 0.

Definition at line 132 of file reference_counter.h.

Referenced by libMesh::ReferenceCounter::n_objects(), libMesh::ReferenceCounter::ReferenceCounter(), libMesh::ReferenceCounter::ReferenceCounter(), libMesh::ReferenceCounter::ReferenceCounter(), and libMesh::ReferenceCounter::~ReferenceCounter().

_preconditioner

template<typename T >

Preconditioner<T>* libMesh::NonlinearSolver< T >::_preconditioner

protectedinherited

Holds the Preconditioner object to be used for the linear solves.

Definition at line 438 of file nonlinear_solver.h.

_reuse_preconditioner

template<typename T >

bool libMesh::NonlinearSolver< T >::_reuse_preconditioner

protectedinherited

Whether we should reuse the linear preconditioner.

Definition at line 412 of file nonlinear_solver.h.

_reuse_preconditioner_max_linear_its

template<typename T >

unsigned int libMesh::NonlinearSolver< T >::_reuse_preconditioner_max_linear_its

protectedinherited

Number of linear iterations to retain the preconditioner.

Definition at line 423 of file nonlinear_solver.h.

_solver

template<typename T >

NOX::Solver::Generic* libMesh::NoxNonlinearSolver< T >::_solver

private

Nonlinear solver context.

Definition at line 120 of file trilinos_nox_nonlinear_solver.h.

_solver_configuration

template<typename T >

SolverConfiguration* libMesh::NonlinearSolver< T >::_solver_configuration

protectedinherited

Optionally store a SolverOptions object that can be used to set parameters like solver type, tolerances and iteration limits.

Definition at line 444 of file nonlinear_solver.h.

_system

template<typename T >

sys_type& libMesh::NonlinearSolver< T >::_system

protectedinherited

A reference to the system we are solving.

Definition at line 428 of file nonlinear_solver.h.

Referenced by libMesh::NonlinearSolver< T >::system(), and libMesh::NonlinearSolver< T >::system().

absolute_residual_tolerance

template<typename T >

double libMesh::NonlinearSolver< T >::absolute_residual_tolerance

inherited

The NonlinearSolver should exit after the residual is reduced to either less than absolute_residual_tolerance or less than relative_residual_tolerance times the initial residual.

Users should increase any of these tolerances that they want to use for a stopping condition.

Definition at line 305 of file nonlinear_solver.h.

absolute_step_tolerance

template<typename T >

double libMesh::NonlinearSolver< T >::absolute_step_tolerance

inherited

The NonlinearSolver should exit after the full nonlinear step norm is reduced to either less than absolute_step_tolerance or less than relative_step_tolerance times the largest nonlinear solution which has been seen so far.

Users should increase any of these tolerances that they want to use for a stopping condition.

Note

Not all NonlinearSolvers support relative_step_tolerance!

Definition at line 328 of file nonlinear_solver.h.

bounds

template<typename T >

void(* libMesh::NonlinearSolver< T >::bounds) (NumericVector< Number > &XL, NumericVector< Number > &XU, sys_type &S)

inherited

Function that computes the lower and upper bounds XL and XU on the solution of the nonlinear system.

Definition at line 190 of file nonlinear_solver.h.

bounds_object

template<typename T >

NonlinearImplicitSystem::ComputeBounds* libMesh::NonlinearSolver< T >::bounds_object

inherited

Object that computes the bounds vectors \( XL \) and \( XU \).

Definition at line 196 of file nonlinear_solver.h.

converged

template<typename T >

bool libMesh::NonlinearSolver< T >::converged

inherited

After a call to solve this will reflect whether or not the nonlinear solve was successful.

Definition at line 352 of file nonlinear_solver.h.

divergence_tolerance

template<typename T >

double libMesh::NonlinearSolver< T >::divergence_tolerance

inherited

The NonlinearSolver should exit if the residual becomes greater than the initial residual times the divergence_tolerance.

Users should adjust this tolerances to prevent divergence of the NonlinearSolver.

Definition at line 315 of file nonlinear_solver.h.

fd_residual_object

template<typename T >

NonlinearImplicitSystem::ComputeResidual* libMesh::NonlinearSolver< T >::fd_residual_object

inherited

Object that computes the residual R(X) of the nonlinear system at the input iterate X for the purpose of forming a finite-differenced Jacobian.

Definition at line 143 of file nonlinear_solver.h.

initial_linear_tolerance

template<typename T >

double libMesh::NonlinearSolver< T >::initial_linear_tolerance

inherited

Any required linear solves will at first be done with this tolerance; the NonlinearSolver may tighten the tolerance for later solves.

Definition at line 341 of file nonlinear_solver.h.

jacobian

template<typename T >

void(* libMesh::NonlinearSolver< T >::jacobian) (const NumericVector< Number > &X, SparseMatrix< Number > &J, sys_type &S)

inherited

Function that computes the Jacobian J(X) of the nonlinear system at the input iterate X.

Definition at line 156 of file nonlinear_solver.h.

Referenced by libMesh::Problem_Interface::computeJacobian(), and libMesh::Problem_Interface::computePreconditioner().

jacobian_object

template<typename T >

NonlinearImplicitSystem::ComputeJacobian* libMesh::NonlinearSolver< T >::jacobian_object

inherited

Object that computes the Jacobian J(X) of the nonlinear system at the input iterate X.

Definition at line 164 of file nonlinear_solver.h.

Referenced by libMesh::Problem_Interface::computeJacobian(), and libMesh::Problem_Interface::computePreconditioner().

matvec

template<typename T >

void(* libMesh::NonlinearSolver< T >::matvec) (const NumericVector< Number > &X, NumericVector< Number > *R, SparseMatrix< Number > *J, sys_type &S)

inherited

Function that computes either the residual \( R(X) \) or the Jacobian \( J(X) \) of the nonlinear system at the input iterate \( X \).

Note

Either R or J could be nullptr.

Definition at line 173 of file nonlinear_solver.h.

Referenced by libMesh::Problem_Interface::computeJacobian(), and libMesh::Problem_Interface::computePreconditioner().

max_function_evaluations

template<typename T >

unsigned int libMesh::NonlinearSolver< T >::max_function_evaluations

inherited

Maximum number of function evaluations.

Definition at line 293 of file nonlinear_solver.h.

max_linear_iterations

template<typename T >

unsigned int libMesh::NonlinearSolver< T >::max_linear_iterations

inherited

Each linear solver step should exit after max_linear_iterations is exceeded.

Definition at line 335 of file nonlinear_solver.h.

max_nonlinear_iterations

template<typename T >

unsigned int libMesh::NonlinearSolver< T >::max_nonlinear_iterations

inherited

Maximum number of non-linear iterations.

Definition at line 288 of file nonlinear_solver.h.

mffd_residual_object

template<typename T >

NonlinearImplicitSystem::ComputeResidual* libMesh::NonlinearSolver< T >::mffd_residual_object

inherited

Object that computes the residual R(X) of the nonlinear system at the input iterate X for the purpose of forming Jacobian-vector products via finite differencing.

Definition at line 150 of file nonlinear_solver.h.

minimum_linear_tolerance

template<typename T >

double libMesh::NonlinearSolver< T >::minimum_linear_tolerance

inherited

The tolerance for linear solves is kept above this minimum.

Definition at line 346 of file nonlinear_solver.h.

nearnullspace

template<typename T >

void(* libMesh::NonlinearSolver< T >::nearnullspace) (std::vector< NumericVector< Number > * > &sp, sys_type &S)

inherited

Function that computes a basis for the Jacobian's near nullspace – the set of "low energy modes" – that can be used for AMG coarsening, if the solver supports it (e.g., ML, PETSc's GAMG).

Definition at line 233 of file nonlinear_solver.h.

nearnullspace_object

template<typename T >

NonlinearImplicitSystem::ComputeVectorSubspace* libMesh::NonlinearSolver< T >::nearnullspace_object

inherited

A callable object that computes a basis for the Jacobian's near nullspace – the set of "low energy modes" – that can be used for AMG coarsening, if the solver supports it (e.g., ML, PETSc's GAMG).

Definition at line 240 of file nonlinear_solver.h.

nullspace

template<typename T >

void(* libMesh::NonlinearSolver< T >::nullspace) (std::vector< NumericVector< Number > * > &sp, sys_type &S)

inherited

Function that computes a basis for the Jacobian's nullspace – the kernel or the "zero energy modes" – that can be used in solving a degenerate problem iteratively, if the solver supports it (e.g., PETSc's KSP).

Definition at line 204 of file nonlinear_solver.h.

nullspace_object

template<typename T >

NonlinearImplicitSystem::ComputeVectorSubspace* libMesh::NonlinearSolver< T >::nullspace_object

inherited

A callable object that computes a basis for the Jacobian's nullspace – the kernel or the "zero energy modes" – that can be used in solving a degenerate problem iteratively, if the solver supports it (e.g., PETSc's KSP).

Definition at line 212 of file nonlinear_solver.h.

postcheck

template<typename T >

void(* libMesh::NonlinearSolver< T >::postcheck) (const NumericVector< Number > &old_soln, NumericVector< Number > &search_direction, NumericVector< Number > &new_soln, bool &changed_search_direction, bool &changed_new_soln, sys_type &S)

inherited

Function that performs a "check" on the Newton search direction and solution after each nonlinear step.

See documentation for the NonlinearImplicitSystem::ComputePostCheck object for more information about the calling sequence.

Definition at line 254 of file nonlinear_solver.h.

Referenced by libMesh::libmesh_petsc_snes_postcheck().

postcheck_object

template<typename T >

NonlinearImplicitSystem::ComputePostCheck* libMesh::NonlinearSolver< T >::postcheck_object

inherited

A callable object that is executed after each nonlinear iteration.

Allows the user to modify both the search direction and the solution vector in an application-specific way.

Definition at line 266 of file nonlinear_solver.h.

Referenced by libMesh::libmesh_petsc_snes_postcheck().

precheck_object

template<typename T >

NonlinearImplicitSystem::ComputePreCheck* libMesh::NonlinearSolver< T >::precheck_object

inherited

Definition at line 268 of file nonlinear_solver.h.

relative_residual_tolerance

template<typename T >

double libMesh::NonlinearSolver< T >::relative_residual_tolerance

inherited

Definition at line 306 of file nonlinear_solver.h.

relative_step_tolerance

template<typename T >

double libMesh::NonlinearSolver< T >::relative_step_tolerance

inherited

Definition at line 329 of file nonlinear_solver.h.

residual

template<typename T >

void(* libMesh::NonlinearSolver< T >::residual) (const NumericVector< Number > &X, NumericVector< Number > &R, sys_type &S)

inherited

Function that computes the residual R(X) of the nonlinear system at the input iterate X.

Definition at line 129 of file nonlinear_solver.h.

residual_and_jacobian_object

template<typename T >

NonlinearImplicitSystem::ComputeResidualandJacobian* libMesh::NonlinearSolver< T >::residual_and_jacobian_object

inherited

Object that computes either the residual \( R(X) \) or the Jacobian \( J(X) \) of the nonlinear system at the input iterate \( X \).

Note

Either R or J could be nullptr.

Definition at line 185 of file nonlinear_solver.h.

Referenced by libMesh::Problem_Interface::computeJacobian(), and libMesh::Problem_Interface::computePreconditioner().

residual_object

template<typename T >

NonlinearImplicitSystem::ComputeResidual* libMesh::NonlinearSolver< T >::residual_object

inherited

Object that computes the residual R(X) of the nonlinear system at the input iterate X.

Definition at line 137 of file nonlinear_solver.h.

transpose_nullspace

template<typename T >

void(* libMesh::NonlinearSolver< T >::transpose_nullspace) (std::vector< NumericVector< Number > * > &sp, sys_type &S)

inherited

Function that computes a basis for the transpose Jacobian's nullspace – when solving a degenerate problem iteratively, if the solver supports it (e.g., PETSc's KSP), it is used to remove contributions outside of R(jac)

Definition at line 219 of file nonlinear_solver.h.

transpose_nullspace_object

template<typename T >

NonlinearImplicitSystem::ComputeVectorSubspace* libMesh::NonlinearSolver< T >::transpose_nullspace_object

inherited

A callable object that computes a basis for the transpose Jacobian's nullspace – when solving a degenerate problem iteratively, if the solver supports it (e.g., PETSc's KSP), it is used to remove contributions outside of R(jac)

Definition at line 226 of file nonlinear_solver.h.

user_presolve

template<typename T >

void(* libMesh::NonlinearSolver< T >::user_presolve) (sys_type &S)

inherited

Customizable function pointer which users can attach to the solver.

Gets called prior to every call to solve().

Definition at line 246 of file nonlinear_solver.h.

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The documentation for this class was generated from the following files:

• include/solvers/trilinos_nox_nonlinear_solver.h
• src/solvers/trilinos_nox_nonlinear_solver.C