cell_hex.C

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// The libMesh Finite Element Library.
// Copyright (C) 2002-2019 Benjamin S. Kirk, John W. Peterson, Roy H. Stogner
 
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
// version 2.1 of the License, or (at your option) any later version.
 
// This library is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
// Lesser General Public License for more details.
 
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
 
 
// C++ includes
#include <algorithm> // for std::min, std::max
 
// Local includes
#include "libmesh/cell_hex.h"
#include "libmesh/cell_hex8.h"
#include "libmesh/face_quad4.h"
#include "libmesh/enum_elem_quality.h"
#include "libmesh/tensor_value.h"
 
#include <array>
 
namespace libMesh
{
 
 
 
// ------------------------------------------------------------
// Hex class static member initializations
 
 
// We need to require C++11...
const Real Hex::_master_points[27][3] =
  {
    {-1, -1, -1},
    {1, -1, -1},
    {1, 1, -1},
    {-1, 1, -1},
    {-1, -1, 1},
    {1, -1, 1},
    {1, 1, 1},
    {-1, 1, 1},
    {0, -1, -1},
    {1, 0, -1},
    {0, 1, -1},
    {-1, 0, -1},
    {-1, -1, 0},
    {1, -1, 0},
    {1, 1, 0},
    {-1, 1, 0},
    {0, -1, 1},
    {1, 0, 1},
    {0, 1, 1},
    {-1, 0, 1},
    {0, 0, -1},
    {0, -1, 0},
    {1, 0, 0},
    {0, 1, 0},
    {-1, 0, 0},
    {0, 0, 1}
  };
 
 
 
 
// ------------------------------------------------------------
// Hex class member functions
dof_id_type Hex::key (const unsigned int s) const
{
  libmesh_assert_less (s, this->n_sides());
 
  return this->compute_key(this->node_id(Hex8::side_nodes_map[s][0]),
                           this->node_id(Hex8::side_nodes_map[s][1]),
                           this->node_id(Hex8::side_nodes_map[s][2]),
                           this->node_id(Hex8::side_nodes_map[s][3]));
}
 
 
 
unsigned int Hex::which_node_am_i(unsigned int side,
                                  unsigned int side_node) const
{
  libmesh_assert_less (side, this->n_sides());
  libmesh_assert_less (side_node, 4);
 
  return Hex8::side_nodes_map[side][side_node];
}
 
 
 
std::unique_ptr<Elem> Hex::side_ptr (const unsigned int i)
{
  libmesh_assert_less (i, this->n_sides());
 
  std::unique_ptr<Elem> face = libmesh_make_unique<Quad4>();
 
  for (auto n : face->node_index_range())
    face->set_node(n) = this->node_ptr(Hex8::side_nodes_map[i][n]);
 
  return face;
}
 
 
 
void Hex::side_ptr (std::unique_ptr<Elem> & side,
                    const unsigned int i)
{
  this->simple_side_ptr<Hex,Hex8>(side, i, QUAD4);
}
 
 
 
bool Hex::is_child_on_side(const unsigned int c,
                           const unsigned int s) const
{
  libmesh_assert_less (c, this->n_children());
  libmesh_assert_less (s, this->n_sides());
 
  // This array maps the Hex8 node numbering to the Hex8 child
  // numbering.  I.e.
  //   node 6 touches child 7, and
  //   node 7 touches child 6, etc.
  const unsigned int node_child_map[8] = { 0, 1, 3, 2, 4, 5, 7, 6 };
 
  for (unsigned int i = 0; i != 4; ++i)
    if (node_child_map[Hex8::side_nodes_map[s][i]] == c)
      return true;
 
  return false;
}
 
 
 
bool Hex::is_edge_on_side(const unsigned int e,
                          const unsigned int s) const
{
  libmesh_assert_less (e, this->n_edges());
  libmesh_assert_less (s, this->n_sides());
 
  return (is_node_on_side(Hex8::edge_nodes_map[e][0],s) &&
          is_node_on_side(Hex8::edge_nodes_map[e][1],s));
}
 
 
 
unsigned int Hex::opposite_side(const unsigned int side_in) const
{
  libmesh_assert_less (side_in, 6);
  static const unsigned char hex_opposites[6] = {5, 3, 4, 1, 2, 0};
  return hex_opposites[side_in];
}
 
 
 
unsigned int Hex::opposite_node(const unsigned int node_in,
                                const unsigned int side_in) const
{
  libmesh_assert_less (node_in, 26);
  libmesh_assert_less (node_in, this->n_nodes());
  libmesh_assert_less (side_in, this->n_sides());
  libmesh_assert(this->is_node_on_side(node_in, side_in));
 
  static const unsigned char side05_nodes_map[] =
    {4, 5, 6, 7, 0, 1, 2, 3, 16, 17, 18, 19, 255, 255, 255, 255, 8, 9, 10, 11, 25, 255, 255, 255, 255, 20};
  static const unsigned char side13_nodes_map[] =
    {3, 2, 1, 0, 7, 6, 5, 4, 10, 255, 8, 255, 15, 14, 13, 12, 18, 255, 16, 255, 255, 23, 255, 21, 255, 255};
  static const unsigned char side24_nodes_map[] =
    {1, 0, 3, 2, 5, 4, 7, 6, 255, 11, 255, 9, 13, 12, 15, 14, 255, 19, 255, 17, 255, 255, 24, 255, 22, 255};
 
  switch (side_in)
    {
    case 0:
    case 5:
      return side05_nodes_map[node_in];
    case 1:
    case 3:
      return side13_nodes_map[node_in];
    case 2:
    case 4:
      return side24_nodes_map[node_in];
    default:
      libmesh_error_msg("Unsupported side_in = " << side_in);
    }
}
 
 
 
Real Hex::quality (const ElemQuality q) const
{
  switch (q)
    {
 
#if LIBMESH_DIM >= 3
 
    case DIAGONAL:
      {
        // Diagonal between node 0 and node 6
        const Real d06 = this->length(0,6);
 
        // Diagonal between node 3 and node 5
        const Real d35 = this->length(3,5);
 
        // Diagonal between node 1 and node 7
        const Real d17 = this->length(1,7);
 
        // Diagonal between node 2 and node 4
        const Real d24 = this->length(2,4);
 
        // Find the biggest and smallest diagonals
        const Real min = std::min(d06, std::min(d35, std::min(d17, d24)));
        const Real max = std::max(d06, std::max(d35, std::max(d17, d24)));
 
        libmesh_assert_not_equal_to (max, 0.0);
 
        return min / max;
 
        break;
      }
 
    case TAPER:
      {
 
        const Real d01 = this->length(0,1);
        const Real d12 = this->length(1,2);
        const Real d23 = this->length(2,3);
        const Real d03 = this->length(0,3);
        const Real d45 = this->length(4,5);
        const Real d56 = this->length(5,6);
        const Real d67 = this->length(6,7);
        const Real d47 = this->length(4,7);
        const Real d04 = this->length(0,4);
        const Real d15 = this->length(1,5);
        const Real d37 = this->length(3,7);
        const Real d26 = this->length(2,6);
 
        std::vector<Real> edge_ratios(12);
        // Front
        edge_ratios[0] = std::min(d01, d45) / std::max(d01, d45);
        edge_ratios[1] = std::min(d04, d15) / std::max(d04, d15);
 
        // Right
        edge_ratios[2] = std::min(d15, d26) / std::max(d15, d26);
        edge_ratios[3] = std::min(d12, d56) / std::max(d12, d56);
 
        // Back
        edge_ratios[4] = std::min(d67, d23) / std::max(d67, d23);
        edge_ratios[5] = std::min(d26, d37) / std::max(d26, d37);
 
        // Left
        edge_ratios[6] = std::min(d04, d37) / std::max(d04, d37);
        edge_ratios[7] = std::min(d03, d47) / std::max(d03, d47);
 
        // Bottom
        edge_ratios[8] = std::min(d01, d23) / std::max(d01, d23);
        edge_ratios[9] = std::min(d03, d12) / std::max(d03, d12);
 
        // Top
        edge_ratios[10] = std::min(d45, d67) / std::max(d45, d67);
        edge_ratios[11] = std::min(d56, d47) / std::max(d56, d47);
 
        return *(std::min_element(edge_ratios.begin(), edge_ratios.end())) ;
 
        break;
      }
 
 
    case STRETCH:
      {
        const Real sqrt3 = 1.73205080756888;
 
        const Real d06 = this->length(0,6);
        const Real d17 = this->length(1,7);
        const Real d35 = this->length(3,5);
        const Real d24 = this->length(2,4);
        const Real max_diag = std::max(d06, std::max(d17, std::max(d35, d24)));
 
        libmesh_assert_not_equal_to ( max_diag, 0.0 );
 
        std::vector<Real> edges(12);
        edges[0]  = this->length(0,1);
        edges[1]  = this->length(1,2);
        edges[2]  = this->length(2,3);
        edges[3]  = this->length(0,3);
        edges[4]  = this->length(4,5);
        edges[5]  = this->length(5,6);
        edges[6]  = this->length(6,7);
        edges[7]  = this->length(4,7);
        edges[8]  = this->length(0,4);
        edges[9]  = this->length(1,5);
        edges[10] = this->length(2,6);
        edges[11] = this->length(3,7);
 
        const Real min_edge = *(std::min_element(edges.begin(), edges.end()));
        return sqrt3 * min_edge / max_diag ;
      }
 
 
    case SHAPE:
    case SKEW:
      {
        // From: P. Knupp, "Algebraic mesh quality metrics for
        // unstructured initial meshes," Finite Elements in Analysis
        // and Design 39, 2003, p. 217-241, Sections 6.2 and 6.3.
 
        // Make local copies of points, we will access these several
        // times below.
        const Point
          x0 = point(0), x1 = point(1), x2 = point(2), x3 = point(3),
          x4 = point(4), x5 = point(5), x6 = point(6), x7 = point(7);
 
        // The columns of the Jacobian matrices are:
        // \vec{x}_{\xi}   = \vec{a1}*eta*zeta + \vec{b1}*eta + \vec{c1}*zeta + \vec{d1}
        // \vec{x}_{\eta}  = \vec{a2}*xi*zeta  + \vec{b2}*xi  + \vec{c2}*zeta + \vec{d2}
        // \vec{x}_{\zeta} = \vec{a3}*xi*eta   + \vec{b3}*xi  + \vec{c3}*eta  + \vec{d3}
        // where the ai, bi, ci, and di are constants defined below.
        const Point a1 = -x0 + x1 - x2 + x3 + x4 - x5 + x6 - x7;
        const Point b1 =  x0 - x1 + x2 - x3 + x4 - x5 + x6 - x7;
        const Point c1 =  x0 - x1 - x2 + x3 - x4 + x5 + x6 - x7;
        const Point d1 = -x0 + x1 + x2 - x3 - x4 + x5 + x6 - x7;
 
        const Point a2 =  a1;
        const Point b2 =  b1;
        const Point c2 =  x0 + x1 - x2 - x3 - x4 - x5 + x6 + x7;
        const Point d2 = -x0 - x1 + x2 + x3 - x4 - x5 + x6 + x7;
 
        const Point a3 =  a1;
        const Point b3 =  c1;
        const Point c3 =  c2;
        const Point d3 = -x0 - x1 - x2 - x3 + x4 + x5 + x6 + x7;
 
        // Form the nodal Jacobians. These were computed using a
        // Python script and the formulas above. Note that we are
        // actually computing the Jacobian _columns_ and passing them
        // to the RealTensor constructor which expects _rows_, but
        // it's OK because we are only interested in determinants and
        // products which are not affected by taking the transpose.
        std::array<RealTensor, 8> A =
          {
            RealTensor(d1, d2, d3),
            RealTensor(d1, b2 + d2, b3 + d3),
            RealTensor(b1 + d1, b2 + d2, a3 + b3 + c3 + d3),
            RealTensor(b1 + d1, d2, c3 + d3),
            RealTensor(c1 + d1, c2 + d2, d3),
            RealTensor(c1 + d1, a2 + b2 + c2 + d2, b3 + d3),
            RealTensor(a1 + b1 + c1 + d1, a2 + b2 + c2 + d2, a3 + b3 + c3 + d3),
            RealTensor(a1 + b1 + c1 + d1, c2 + d2, c3 + d3)
          };
 
        // Compute Nodal areas, alpha_k = det(A_k).
        // If any of these are zero or negative, we return zero
        // (lowest possible value) for the quality, since the formulas
        // below require positive nodal areas.
        std::array<Real, 8> alpha;
        for (unsigned int k=0; k<alpha.size(); ++k)
          {
            alpha[k] = A[k].det();
            if (alpha[k] <= 0.)
              return 0.;
          }
 
        // Compute metric tensors, T_k = A_k^T * A_k.
        std::array<RealTensor, 8> T;
        for (unsigned int k=0; k<T.size(); ++k)
          T[k] = A[k] * A[k].transpose();
 
        // Compute and return the shape metric. These only use the
        // diagonal entries of the T_k.
        Real den = 0.;
        if (q == SHAPE)
          {
            for (unsigned int k=0; k<T.size(); ++k)
              den += T[k].tr() / std::pow(alpha[k], 2./3.);
            return (den == 0.) ? 0 : (24. / den);
          }
        else
          {
            for (unsigned int k=0; k<T.size(); ++k)
              den += std::pow(std::sqrt(T[k](0,0) * T[k](1,1) * T[k](2,2)) / alpha[k], 2./3.);
            return (den == 0.) ? 0 : (8. / den);
          }
      }
#endif // LIBMESH_DIM >= 3
 
    default:
      return Elem::quality(q);
    }
}
 
 
 
std::pair<Real, Real> Hex::qual_bounds (const ElemQuality q) const
{
  std::pair<Real, Real> bounds;
 
  switch (q)
    {
 
    case ASPECT_RATIO:
      bounds.first  = 1.;
      bounds.second = 4.;
      break;
 
    case SKEW:
      bounds.first  = 0.;
      bounds.second = 0.5;
      break;
 
    case SHEAR:
    case SHAPE:
      bounds.first  = 0.3;
      bounds.second = 1.;
      break;
 
    case CONDITION:
      bounds.first  = 1.;
      bounds.second = 8.;
      break;
 
    case JACOBIAN:
      bounds.first  = 0.5;
      bounds.second = 1.;
      break;
 
    case DISTORTION:
      bounds.first  = 0.6;
      bounds.second = 1.;
      break;
 
    case TAPER:
      bounds.first  = 0.;
      bounds.second = 0.4;
      break;
 
    case STRETCH:
      bounds.first  = 0.25;
      bounds.second = 1.;
      break;
 
    case DIAGONAL:
      bounds.first  = 0.65;
      bounds.second = 1.;
      break;
 
    case SIZE:
      bounds.first  = 0.5;
      bounds.second = 1.;
      break;
 
    default:
      libMesh::out << "Warning: Invalid quality measure chosen." << std::endl;
      bounds.first  = -1;
      bounds.second = -1;
    }
 
  return bounds;
}
 
 
 
const unsigned short int Hex::_second_order_vertex_child_number[27] =
  {
    99,99,99,99,99,99,99,99, // Vertices
    0,1,2,0,0,1,2,3,4,5,6,5, // Edges
    0,0,1,2,0,4,             // Faces
    0                        // Interior
  };
 
 
 
const unsigned short int Hex::_second_order_vertex_child_index[27] =
  {
    99,99,99,99,99,99,99,99, // Vertices
    1,2,3,3,4,5,6,7,5,6,7,7, // Edges
    2,5,6,7,7,6,             // Faces
    6                        // Interior
  };
 
 
const unsigned short int Hex::_second_order_adjacent_vertices[12][2] =
  {
    { 0,  1}, // vertices adjacent to node 8
    { 1,  2}, // vertices adjacent to node 9
    { 2,  3}, // vertices adjacent to node 10
    { 0,  3}, // vertices adjacent to node 11
 
    { 0,  4}, // vertices adjacent to node 12
    { 1,  5}, // vertices adjacent to node 13
    { 2,  6}, // vertices adjacent to node 14
    { 3,  7}, // vertices adjacent to node 15
 
    { 4,  5}, // vertices adjacent to node 16
    { 5,  6}, // vertices adjacent to node 17
    { 6,  7}, // vertices adjacent to node 18
    { 4,  7}  // vertices adjacent to node 19
  };
 
 
#ifdef LIBMESH_ENABLE_AMR
 
// We number 125 "possible node locations" for a 2x2x2 refinement of
// hexes with up to 3x3x3 nodes each
const int Hex::_child_node_lookup[8][27] =
  {
    // node lookup for child 0 (near node 0)
    { 0, 2, 12, 10,  50, 52, 62, 60,  1, 7, 11, 5,  25, 27, 37, 35,
      51, 57, 61, 55,  6,  26, 32, 36, 30,  56,  31},
 
    // node lookup for child 1 (near node 1)
    { 2, 4, 14, 12,  52, 54, 64, 62,  3, 9, 13, 7,  27, 29, 39, 37,
      53, 59, 63, 57,  8,  28, 34, 38, 32,  58,  33},
 
    // node lookup for child 2 (near node 3)
    { 10, 12, 22, 20,  60, 62, 72, 70,  11, 17, 21, 15,  35, 37, 47, 45,
      61, 67, 71, 65,  16,  36, 42, 46, 40,  66,  41},
 
    // node lookup for child 3 (near node 2)
    { 12, 14, 24, 22,  62, 64, 74, 72,  13, 19, 23, 17,  37, 39, 49, 47,
      63, 69, 73, 67,  18,  38, 44, 48, 42,  68,  43},
 
    // node lookup for child 4 (near node 4)
    { 50, 52, 62, 60,  100, 102, 112, 110,  51, 57, 61, 55,  75, 77, 87, 85,
      101, 107, 111, 105,  56,  76, 82, 86, 80,  106,  81},
 
    // node lookup for child 5 (near node 5)
    { 52, 54, 64, 62,  102, 104, 114, 112,  53, 59, 63, 57,  77, 79, 89, 87,
      103, 109, 113, 107,  58,  78, 84, 88, 82,  108,  93},
 
    // node lookup for child 6 (near node 7)
    { 60, 62, 72, 70,  110, 112, 122, 120,  61, 67, 71, 65,  85, 87, 97, 95,
      111, 117, 121, 115,  66,  86, 92, 96, 90,  116,  91},
 
    // node lookup for child 7 (near node 6)
    { 62, 64, 74, 72,  112, 114, 124, 122,  63, 69, 73, 67,  87, 89, 99, 97,
      113, 119, 123, 117,  68,  88, 94, 98, 92,  118,  103}
  };
 
#endif // LIBMESH_ENABLE_AMR
 
 
} // namespace libMesh