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SolutionRasterizer Class Reference

This Userobject is the base class of Userobjects that generate one random number per timestep and quadrature point in a way that the integral over all random numbers is zero. More...

#include <SolutionRasterizer.h>

Inheritance diagram for SolutionRasterizer:
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Public Types

typedef DataFileName DataFileParameterType
 
typedef GenericSymFunction< is_ad > SymFunction
 
typedef std::shared_ptr< SymFunctionSymFunctionPtr
 

Public Member Functions

 SolutionRasterizer (const InputParameters &parameters)
 
virtual ~SolutionRasterizer ()
 
virtual void initialSetup ()
 Initialize the System and Mesh objects for the solution being read. More...
 
virtual Real solutionSampleTime () override
 
virtual void timestepSetup () override
 
unsigned int getLocalVarIndex (const std::string &var_name) const
 
Real pointValueWrapper (Real t, const Point &p, const std::string &var_name, const MooseEnum &weighting_type=weightingType(), const std::set< subdomain_id_type > *subdomain_ids=nullptr) const
 
Real pointValue (Real t, const Point &p, const unsigned int local_var_index, const std::set< subdomain_id_type > *subdomain_ids=nullptr) const
 
Real pointValue (Real t, const Point &p, const std::string &var_name, const std::set< subdomain_id_type > *subdomain_ids=nullptr) const
 
std::map< const Elem *, RealdiscontinuousPointValue (Real t, Point pt, const unsigned int local_var_index, const std::set< subdomain_id_type > *subdomain_ids=nullptr) const
 
std::map< const Elem *, RealdiscontinuousPointValue (Real t, const Point &p, const std::string &var_name, const std::set< subdomain_id_type > *subdomain_ids=nullptr) const
 
libMesh::RealGradient pointValueGradientWrapper (Real t, const Point &p, const std::string &var_name, const MooseEnum &weighting_type=weightingType(), const std::set< subdomain_id_type > *subdomain_ids=nullptr) const
 
libMesh::RealGradient pointValueGradient (Real t, const Point &p, const std::string &var_name, const std::set< subdomain_id_type > *subdomain_ids=nullptr) const
 
libMesh::RealGradient pointValueGradient (Real t, Point pt, const unsigned int local_var_index, const std::set< subdomain_id_type > *subdomain_ids=nullptr) const
 
std::map< const Elem *, libMesh::RealGradientdiscontinuousPointValueGradient (Real t, const Point &p, const std::string &var_name, const std::set< subdomain_id_type > *subdomain_ids=nullptr) const
 
std::map< const Elem *, libMesh::RealGradientdiscontinuousPointValueGradient (Real t, Point pt, const unsigned int local_var_index, const std::set< subdomain_id_type > *subdomain_ids=nullptr) const
 
Real directValue (const Node *node, const std::string &var_name) const
 
Real directValue (const Elem *elem, const std::string &var_name) const
 
Real scalarValue (Real t, const std::string &var_name) const
 
virtual void initialize () override
 
virtual void finalize () override
 
virtual void execute () override
 
const std::vector< std::string > & variableNames () const
 
bool isVariableNodal (const std::string &var_name) const
 
unsigned int getMeshFileDimension () const
 
const std::string getMeshFileName () const
 
const std::map< SubdomainName, SubdomainID > & getBlockNamesToIds () const
 
const std::map< SubdomainID, SubdomainName > & getBlockIdsToNames () const
 
MooseEnum getSolutionFileType () const
 
SubProblemgetSubProblem () const
 
bool shouldDuplicateInitialExecution () const
 
virtual Real spatialValue (const Point &) const
 
virtual const std::vector< Point > spatialPoints () const
 
void gatherSum (T &value)
 
void gatherMax (T &value)
 
void gatherMin (T &value)
 
void gatherProxyValueMax (T1 &proxy, T2 &value)
 
void gatherProxyValueMin (T1 &proxy, T2 &value)
 
void setPrimaryThreadCopy (UserObject *primary)
 
UserObjectprimaryThreadCopy ()
 
std::set< UserObjectName > getDependObjects () const
 
virtual bool needThreadedCopy () const
 
const std::set< std::string > & getRequestedItems () override
 
const std::set< std::string > & getSuppliedItems () override
 
unsigned int systemNumber () const
 
virtual bool enabled () const
 
std::shared_ptr< MooseObjectgetSharedPtr ()
 
std::shared_ptr< const MooseObjectgetSharedPtr () const
 
MooseAppgetMooseApp () const
 
const std::string & type () const
 
virtual const std::string & name () const
 
std::string typeAndName () const
 
std::string errorPrefix (const std::string &error_type) const
 
void callMooseError (std::string msg, const bool with_prefix) const
 
MooseObjectParameterName uniqueParameterName (const std::string &parameter_name) const
 
const InputParametersparameters () const
 
MooseObjectName uniqueName () const
 
const T & getParam (const std::string &name) const
 
std::vector< std::pair< T1, T2 > > getParam (const std::string &param1, const std::string &param2) const
 
const T * queryParam (const std::string &name) const
 
const T & getRenamedParam (const std::string &old_name, const std::string &new_name) const
 
getCheckedPointerParam (const std::string &name, const std::string &error_string="") const
 
bool isParamValid (const std::string &name) const
 
bool isParamSetByUser (const std::string &nm) const
 
void paramError (const std::string &param, Args... args) const
 
void paramWarning (const std::string &param, Args... args) const
 
void paramInfo (const std::string &param, Args... args) const
 
void connectControllableParams (const std::string &parameter, const std::string &object_type, const std::string &object_name, const std::string &object_parameter) const
 
void mooseError (Args &&... args) const
 
void mooseErrorNonPrefixed (Args &&... args) const
 
void mooseDocumentedError (const std::string &repo_name, const unsigned int issue_num, Args &&... args) const
 
void mooseWarning (Args &&... args) const
 
void mooseWarningNonPrefixed (Args &&... args) const
 
void mooseDeprecated (Args &&... args) const
 
void mooseInfo (Args &&... args) const
 
std::string getDataFileName (const std::string &param) const
 
std::string getDataFileNameByName (const std::string &relative_path) const
 
std::string getDataFilePath (const std::string &relative_path) const
 
virtual void jacobianSetup ()
 
virtual void residualSetup ()
 
virtual void customSetup (const ExecFlagType &)
 
const ExecFlagEnumgetExecuteOnEnum () const
 
UserObjectName getUserObjectName (const std::string &param_name) const
 
const T & getUserObject (const std::string &param_name, bool is_dependency=true) const
 
const T & getUserObjectByName (const UserObjectName &object_name, bool is_dependency=true) const
 
const UserObjectgetUserObjectBase (const std::string &param_name, bool is_dependency=true) const
 
const UserObjectgetUserObjectBaseByName (const UserObjectName &object_name, bool is_dependency=true) const
 
const std::vector< MooseVariableScalar *> & getCoupledMooseScalarVars ()
 
const std::set< TagID > & getScalarVariableCoupleableVectorTags () const
 
const std::set< TagID > & getScalarVariableCoupleableMatrixTags () const
 
const GenericMaterialProperty< T, is_ad > & getGenericMaterialProperty (const std::string &name, MaterialData &material_data, const unsigned int state=0)
 
const GenericMaterialProperty< T, is_ad > & getGenericMaterialProperty (const std::string &name, const unsigned int state=0)
 
const GenericMaterialProperty< T, is_ad > & getGenericMaterialProperty (const std::string &name, const unsigned int state=0)
 
const MaterialProperty< T > & getMaterialProperty (const std::string &name, MaterialData &material_data, const unsigned int state=0)
 
const MaterialProperty< T > & getMaterialProperty (const std::string &name, const unsigned int state=0)
 
const MaterialProperty< T > & getMaterialProperty (const std::string &name, const unsigned int state=0)
 
const ADMaterialProperty< T > & getADMaterialProperty (const std::string &name, MaterialData &material_data)
 
const ADMaterialProperty< T > & getADMaterialProperty (const std::string &name)
 
const ADMaterialProperty< T > & getADMaterialProperty (const std::string &name)
 
const MaterialProperty< T > & getMaterialPropertyOld (const std::string &name, MaterialData &material_data)
 
const MaterialProperty< T > & getMaterialPropertyOld (const std::string &name)
 
const MaterialProperty< T > & getMaterialPropertyOld (const std::string &name)
 
const MaterialProperty< T > & getMaterialPropertyOlder (const std::string &name, MaterialData &material_data)
 
const MaterialProperty< T > & getMaterialPropertyOlder (const std::string &name)
 
const MaterialProperty< T > & getMaterialPropertyOlder (const std::string &name)
 
const GenericMaterialProperty< T, is_ad > & getGenericMaterialPropertyByName (const MaterialPropertyName &name, MaterialData &material_data, const unsigned int state)
 
const GenericMaterialProperty< T, is_ad > & getGenericMaterialPropertyByName (const MaterialPropertyName &name, const unsigned int state=0)
 
const GenericMaterialProperty< T, is_ad > & getGenericMaterialPropertyByName (const MaterialPropertyName &name, const unsigned int state=0)
 
const MaterialProperty< T > & getMaterialPropertyByName (const MaterialPropertyName &name, MaterialData &material_data, const unsigned int state=0)
 
const MaterialProperty< T > & getMaterialPropertyByName (const MaterialPropertyName &name, const unsigned int state=0)
 
const MaterialProperty< T > & getMaterialPropertyByName (const MaterialPropertyName &name, const unsigned int state=0)
 
const ADMaterialProperty< T > & getADMaterialPropertyByName (const MaterialPropertyName &name, MaterialData &material_data)
 
const ADMaterialProperty< T > & getADMaterialPropertyByName (const MaterialPropertyName &name)
 
const ADMaterialProperty< T > & getADMaterialPropertyByName (const MaterialPropertyName &name)
 
const MaterialProperty< T > & getMaterialPropertyOldByName (const MaterialPropertyName &name, MaterialData &material_data)
 
const MaterialProperty< T > & getMaterialPropertyOldByName (const MaterialPropertyName &name)
 
const MaterialProperty< T > & getMaterialPropertyOldByName (const MaterialPropertyName &name)
 
const MaterialProperty< T > & getMaterialPropertyOlderByName (const MaterialPropertyName &name, MaterialData &material_data)
 
const MaterialProperty< T > & getMaterialPropertyOlderByName (const MaterialPropertyName &name)
 
const MaterialProperty< T > & getMaterialPropertyOlderByName (const MaterialPropertyName &name)
 
std::pair< const MaterialProperty< T > *, std::set< SubdomainID > > getBlockMaterialProperty (const MaterialPropertyName &name)
 
const GenericMaterialProperty< T, is_ad > & getGenericZeroMaterialProperty (const std::string &name)
 
const GenericMaterialProperty< T, is_ad > & getGenericZeroMaterialProperty ()
 
const GenericMaterialProperty< T, is_ad > & getGenericZeroMaterialPropertyByName (const std::string &prop_name)
 
const MaterialProperty< T > & getZeroMaterialProperty (Ts... args)
 
std::set< SubdomainIDgetMaterialPropertyBlocks (const std::string &name)
 
std::vector< SubdomainName > getMaterialPropertyBlockNames (const std::string &name)
 
std::set< BoundaryIDgetMaterialPropertyBoundaryIDs (const std::string &name)
 
std::vector< BoundaryName > getMaterialPropertyBoundaryNames (const std::string &name)
 
void checkBlockAndBoundaryCompatibility (std::shared_ptr< MaterialBase > discrete)
 
std::unordered_map< SubdomainID, std::vector< MaterialBase *> > buildRequiredMaterials (bool allow_stateful=true)
 
void statefulPropertiesAllowed (bool)
 
bool getMaterialPropertyCalled () const
 
virtual const std::unordered_set< unsigned int > & getMatPropDependencies () const
 
virtual void resolveOptionalProperties ()
 
const GenericMaterialProperty< T, is_ad > & getPossiblyConstantGenericMaterialPropertyByName (const MaterialPropertyName &prop_name, MaterialData &material_data, const unsigned int state)
 
bool isImplicit ()
 
Moose::StateArg determineState () const
 
void setParserFeatureFlags (SymFunctionPtr &) const
 
virtual void threadJoin (const UserObject &) override
 
virtual void threadJoin (const UserObject &) override
 
virtual void subdomainSetup () override
 
virtual void subdomainSetup () override
 
bool hasUserObject (const std::string &param_name) const
 
bool hasUserObject (const std::string &param_name) const
 
bool hasUserObject (const std::string &param_name) const
 
bool hasUserObject (const std::string &param_name) const
 
bool hasUserObjectByName (const UserObjectName &object_name) const
 
bool hasUserObjectByName (const UserObjectName &object_name) const
 
bool hasUserObjectByName (const UserObjectName &object_name) const
 
bool hasUserObjectByName (const UserObjectName &object_name) const
 
const GenericOptionalMaterialProperty< T, is_ad > & getGenericOptionalMaterialProperty (const std::string &name, const unsigned int state=0)
 
const GenericOptionalMaterialProperty< T, is_ad > & getGenericOptionalMaterialProperty (const std::string &name, const unsigned int state=0)
 
const OptionalMaterialProperty< T > & getOptionalMaterialProperty (const std::string &name, const unsigned int state=0)
 
const OptionalMaterialProperty< T > & getOptionalMaterialProperty (const std::string &name, const unsigned int state=0)
 
const OptionalADMaterialProperty< T > & getOptionalADMaterialProperty (const std::string &name)
 
const OptionalADMaterialProperty< T > & getOptionalADMaterialProperty (const std::string &name)
 
const OptionalMaterialProperty< T > & getOptionalMaterialPropertyOld (const std::string &name)
 
const OptionalMaterialProperty< T > & getOptionalMaterialPropertyOld (const std::string &name)
 
const OptionalMaterialProperty< T > & getOptionalMaterialPropertyOlder (const std::string &name)
 
const OptionalMaterialProperty< T > & getOptionalMaterialPropertyOlder (const std::string &name)
 
MaterialBasegetMaterial (const std::string &name)
 
MaterialBasegetMaterial (const std::string &name)
 
MaterialBasegetMaterialByName (const std::string &name, bool no_warn=false)
 
MaterialBasegetMaterialByName (const std::string &name, bool no_warn=false)
 
bool hasMaterialProperty (const std::string &name)
 
bool hasMaterialProperty (const std::string &name)
 
bool hasMaterialPropertyByName (const std::string &name)
 
bool hasMaterialPropertyByName (const std::string &name)
 
bool hasADMaterialProperty (const std::string &name)
 
bool hasADMaterialProperty (const std::string &name)
 
bool hasADMaterialPropertyByName (const std::string &name)
 
bool hasADMaterialPropertyByName (const std::string &name)
 
bool hasGenericMaterialProperty (const std::string &name)
 
bool hasGenericMaterialProperty (const std::string &name)
 
bool hasGenericMaterialPropertyByName (const std::string &name)
 
bool hasGenericMaterialPropertyByName (const std::string &name)
 
const FunctiongetFunction (const std::string &name) const
 
const FunctiongetFunctionByName (const FunctionName &name) const
 
bool hasFunction (const std::string &param_name) const
 
bool hasFunctionByName (const FunctionName &name) const
 
bool isDefaultPostprocessorValue (const std::string &param_name, const unsigned int index=0) const
 
bool hasPostprocessor (const std::string &param_name, const unsigned int index=0) const
 
bool hasPostprocessorByName (const PostprocessorName &name) const
 
std::size_t coupledPostprocessors (const std::string &param_name) const
 
const PostprocessorName & getPostprocessorName (const std::string &param_name, const unsigned int index=0) const
 
const VectorPostprocessorValuegetVectorPostprocessorValue (const std::string &param_name, const std::string &vector_name) const
 
const VectorPostprocessorValuegetVectorPostprocessorValue (const std::string &param_name, const std::string &vector_name, bool needs_broadcast) const
 
const VectorPostprocessorValuegetVectorPostprocessorValueByName (const VectorPostprocessorName &name, const std::string &vector_name) const
 
const VectorPostprocessorValuegetVectorPostprocessorValueByName (const VectorPostprocessorName &name, const std::string &vector_name, bool needs_broadcast) const
 
const VectorPostprocessorValuegetVectorPostprocessorValueOld (const std::string &param_name, const std::string &vector_name) const
 
const VectorPostprocessorValuegetVectorPostprocessorValueOld (const std::string &param_name, const std::string &vector_name, bool needs_broadcast) const
 
const VectorPostprocessorValuegetVectorPostprocessorValueOldByName (const VectorPostprocessorName &name, const std::string &vector_name) const
 
const VectorPostprocessorValuegetVectorPostprocessorValueOldByName (const VectorPostprocessorName &name, const std::string &vector_name, bool needs_broadcast) const
 
const ScatterVectorPostprocessorValuegetScatterVectorPostprocessorValue (const std::string &param_name, const std::string &vector_name) const
 
const ScatterVectorPostprocessorValuegetScatterVectorPostprocessorValueByName (const VectorPostprocessorName &name, const std::string &vector_name) const
 
const ScatterVectorPostprocessorValuegetScatterVectorPostprocessorValueOld (const std::string &param_name, const std::string &vector_name) const
 
const ScatterVectorPostprocessorValuegetScatterVectorPostprocessorValueOldByName (const VectorPostprocessorName &name, const std::string &vector_name) const
 
bool hasVectorPostprocessor (const std::string &param_name, const std::string &vector_name) const
 
bool hasVectorPostprocessor (const std::string &param_name) const
 
bool hasVectorPostprocessorByName (const VectorPostprocessorName &name, const std::string &vector_name) const
 
bool hasVectorPostprocessorByName (const VectorPostprocessorName &name) const
 
const VectorPostprocessorName & getVectorPostprocessorName (const std::string &param_name) const
 
T & getSampler (const std::string &name)
 
SamplergetSampler (const std::string &name)
 
T & getSamplerByName (const SamplerName &name)
 
SamplergetSamplerByName (const SamplerName &name)
 
virtual void meshChanged ()
 
virtual void meshDisplaced ()
 
PerfGraphperfGraph ()
 
const PostprocessorValuegetPostprocessorValue (const std::string &param_name, const unsigned int index=0) const
 
const PostprocessorValuegetPostprocessorValue (const std::string &param_name, const unsigned int index=0) const
 
const PostprocessorValuegetPostprocessorValueOld (const std::string &param_name, const unsigned int index=0) const
 
const PostprocessorValuegetPostprocessorValueOld (const std::string &param_name, const unsigned int index=0) const
 
const PostprocessorValuegetPostprocessorValueOlder (const std::string &param_name, const unsigned int index=0) const
 
const PostprocessorValuegetPostprocessorValueOlder (const std::string &param_name, const unsigned int index=0) const
 
virtual const PostprocessorValuegetPostprocessorValueByName (const PostprocessorName &name) const
 
virtual const PostprocessorValuegetPostprocessorValueByName (const PostprocessorName &name) const
 
const PostprocessorValuegetPostprocessorValueOldByName (const PostprocessorName &name) const
 
const PostprocessorValuegetPostprocessorValueOldByName (const PostprocessorName &name) const
 
const PostprocessorValuegetPostprocessorValueOlderByName (const PostprocessorName &name) const
 
const PostprocessorValuegetPostprocessorValueOlderByName (const PostprocessorName &name) const
 
bool isVectorPostprocessorDistributed (const std::string &param_name) const
 
bool isVectorPostprocessorDistributed (const std::string &param_name) const
 
bool isVectorPostprocessorDistributedByName (const VectorPostprocessorName &name) const
 
bool isVectorPostprocessorDistributedByName (const VectorPostprocessorName &name) const
 
const DistributiongetDistribution (const std::string &name) const
 
const T & getDistribution (const std::string &name) const
 
const DistributiongetDistribution (const std::string &name) const
 
const T & getDistribution (const std::string &name) const
 
const DistributiongetDistributionByName (const DistributionName &name) const
 
const T & getDistributionByName (const std::string &name) const
 
const DistributiongetDistributionByName (const DistributionName &name) const
 
const T & getDistributionByName (const std::string &name) const
 
const Parallel::Communicator & comm () const
 
processor_id_type n_processors () const
 
processor_id_type processor_id () const
 

Static Public Member Functions

static InputParameters validParams ()
 
static MooseEnum weightingType ()
 
static void sort (typename std::vector< T > &vector)
 
static void sortDFS (typename std::vector< T > &vector)
 
static void cyclicDependencyError (CyclicDependencyException< T2 > &e, const std::string &header)
 

Public Attributes

SymFunctionPtr _time_transformation
 
const ConsoleStream _console
 

Static Public Attributes

static constexpr PropertyValue::id_type default_property_id
 
static constexpr PropertyValue::id_type zero_property_id
 
static constexpr auto SYSTEM
 
static constexpr auto NAME
 

Protected Types

enum  FailureMethod
 

Protected Member Functions

virtual Real directValue (dof_id_type dof_index) const
 
void readXda ()
 
void readExodusII ()
 
void updateExodusTimeInterpolation ()
 
bool updateExodusBracketingTimeIndices ()
 
Real evalMeshFunction (const Point &p, const unsigned int local_var_index, unsigned int func_num, const std::set< subdomain_id_type > *subdomain_ids=nullptr) const
 
std::map< const Elem *, RealevalMultiValuedMeshFunction (const Point &p, const unsigned int local_var_index, unsigned int func_num, const std::set< subdomain_id_type > *subdomain_ids=nullptr) const
 
libMesh::RealGradient evalMeshFunctionGradient (const Point &p, const unsigned int local_var_index, unsigned int func_num, const std::set< subdomain_id_type > *subdomain_ids=nullptr) const
 
std::map< const Elem *, libMesh::RealGradientevalMultiValuedMeshFunctionGradient (const Point &p, const unsigned int local_var_index, unsigned int func_num, const std::set< subdomain_id_type > *subdomain_ids=nullptr) const
 
void readBlockIdMapFromExodusII ()
 
virtual void addPostprocessorDependencyHelper (const PostprocessorName &name) const override
 
virtual void addVectorPostprocessorDependencyHelper (const VectorPostprocessorName &name) const override
 
virtual void addUserObjectDependencyHelper (const UserObject &uo) const override
 
void addReporterDependencyHelper (const ReporterName &reporter_name) override
 
const ReporterNamegetReporterName (const std::string &param_name) const
 
T & declareRestartableData (const std::string &data_name, Args &&... args)
 
ManagedValue< T > declareManagedRestartableDataWithContext (const std::string &data_name, void *context, Args &&... args)
 
const T & getRestartableData (const std::string &data_name) const
 
T & declareRestartableDataWithContext (const std::string &data_name, void *context, Args &&... args)
 
T & declareRecoverableData (const std::string &data_name, Args &&... args)
 
T & declareRestartableDataWithObjectName (const std::string &data_name, const std::string &object_name, Args &&... args)
 
T & declareRestartableDataWithObjectNameWithContext (const std::string &data_name, const std::string &object_name, void *context, Args &&... args)
 
std::string restartableName (const std::string &data_name) const
 
const T & getMeshProperty (const std::string &data_name, const std::string &prefix)
 
const T & getMeshProperty (const std::string &data_name)
 
bool hasMeshProperty (const std::string &data_name, const std::string &prefix) const
 
bool hasMeshProperty (const std::string &data_name, const std::string &prefix) const
 
bool hasMeshProperty (const std::string &data_name) const
 
bool hasMeshProperty (const std::string &data_name) const
 
std::string meshPropertyName (const std::string &data_name) const
 
PerfID registerTimedSection (const std::string &section_name, const unsigned int level) const
 
PerfID registerTimedSection (const std::string &section_name, const unsigned int level, const std::string &live_message, const bool print_dots=true) const
 
std::string timedSectionName (const std::string &section_name) const
 
bool isCoupledScalar (const std::string &var_name, unsigned int i=0) const
 
unsigned int coupledScalarComponents (const std::string &var_name) const
 
unsigned int coupledScalar (const std::string &var_name, unsigned int comp=0) const
 
libMesh::Order coupledScalarOrder (const std::string &var_name, unsigned int comp=0) const
 
const VariableValuecoupledScalarValue (const std::string &var_name, unsigned int comp=0) const
 
const ADVariableValueadCoupledScalarValue (const std::string &var_name, unsigned int comp=0) const
 
const GenericVariableValue< is_ad > & coupledGenericScalarValue (const std::string &var_name, unsigned int comp=0) const
 
const GenericVariableValue< false > & coupledGenericScalarValue (const std::string &var_name, const unsigned int comp) const
 
const GenericVariableValue< true > & coupledGenericScalarValue (const std::string &var_name, const unsigned int comp) const
 
const VariableValuecoupledVectorTagScalarValue (const std::string &var_name, TagID tag, unsigned int comp=0) const
 
const VariableValuecoupledMatrixTagScalarValue (const std::string &var_name, TagID tag, unsigned int comp=0) const
 
const VariableValuecoupledScalarValueOld (const std::string &var_name, unsigned int comp=0) const
 
const VariableValuecoupledScalarValueOlder (const std::string &var_name, unsigned int comp=0) const
 
const VariableValuecoupledScalarDot (const std::string &var_name, unsigned int comp=0) const
 
const ADVariableValueadCoupledScalarDot (const std::string &var_name, unsigned int comp=0) const
 
const VariableValuecoupledScalarDotDot (const std::string &var_name, unsigned int comp=0) const
 
const VariableValuecoupledScalarDotOld (const std::string &var_name, unsigned int comp=0) const
 
const VariableValuecoupledScalarDotDotOld (const std::string &var_name, unsigned int comp=0) const
 
const VariableValuecoupledScalarDotDu (const std::string &var_name, unsigned int comp=0) const
 
const VariableValuecoupledScalarDotDotDu (const std::string &var_name, unsigned int comp=0) const
 
const MooseVariableScalargetScalarVar (const std::string &var_name, unsigned int comp) const
 
virtual void checkMaterialProperty (const std::string &name, const unsigned int state)
 
void markMatPropRequested (const std::string &)
 
MaterialPropertyName getMaterialPropertyName (const std::string &name) const
 
void checkExecutionStage ()
 
GenericReal< is_ad > evaluate (SymFunctionPtr &, const std::string &object_name="")
 
GenericReal< is_ad > evaluate (SymFunctionPtr &, const std::vector< GenericReal< is_ad >> &, const std::string &object_name="")
 
void addFParserConstants (SymFunctionPtr &parser, const std::vector< std::string > &constant_names, const std::vector< std::string > &constant_expressions) const
 
virtual void functionsOptimize (SymFunctionPtr &parsed_function)
 
void functionsOptimize (SymFunctionPtr &parsed_function)
 
void functionsOptimize (SymFunctionPtr &parsed_function)
 
void parsedFunctionSetup (SymFunctionPtr &function, const std::string &expression, const std::string &variables, const std::vector< std::string > &constant_names, const std::vector< std::string > &constant_expressions, const libMesh::Parallel::Communicator &comm) const
 
const T & getReporterValue (const std::string &param_name, const std::size_t time_index=0)
 
const T & getReporterValue (const std::string &param_name, ReporterMode mode, const std::size_t time_index=0)
 
const T & getReporterValue (const std::string &param_name, const std::size_t time_index=0)
 
const T & getReporterValue (const std::string &param_name, ReporterMode mode, const std::size_t time_index=0)
 
const T & getReporterValueByName (const ReporterName &reporter_name, const std::size_t time_index=0)
 
const T & getReporterValueByName (const ReporterName &reporter_name, ReporterMode mode, const std::size_t time_index=0)
 
const T & getReporterValueByName (const ReporterName &reporter_name, const std::size_t time_index=0)
 
const T & getReporterValueByName (const ReporterName &reporter_name, ReporterMode mode, const std::size_t time_index=0)
 
bool hasReporterValue (const std::string &param_name) const
 
bool hasReporterValue (const std::string &param_name) const
 
bool hasReporterValue (const std::string &param_name) const
 
bool hasReporterValue (const std::string &param_name) const
 
bool hasReporterValueByName (const ReporterName &reporter_name) const
 
bool hasReporterValueByName (const ReporterName &reporter_name) const
 
bool hasReporterValueByName (const ReporterName &reporter_name) const
 
bool hasReporterValueByName (const ReporterName &reporter_name) const
 
const GenericMaterialProperty< T, is_ad > * defaultGenericMaterialProperty (const std::string &name)
 
const GenericMaterialProperty< T, is_ad > * defaultGenericMaterialProperty (const std::string &name)
 
const MaterialProperty< T > * defaultMaterialProperty (const std::string &name)
 
const MaterialProperty< T > * defaultMaterialProperty (const std::string &name)
 
const ADMaterialProperty< T > * defaultADMaterialProperty (const std::string &name)
 
const ADMaterialProperty< T > * defaultADMaterialProperty (const std::string &name)
 

Static Protected Member Functions

static std::string meshPropertyName (const std::string &data_name, const std::string &prefix)
 

Protected Attributes

FileName _xyz_input
 
FileName _xyz_output
 
std::string _variable
 
MooseEnum _raster_mode
 
Real _threshold
 
MooseEnum _file_type
 
std::string _mesh_file
 
std::string _es_file
 
std::string _system_name
 
std::vector< std::string > _system_variables
 
std::map< std::string, unsigned int_local_variable_index
 
std::vector< std::string > _nodal_variables
 
std::vector< std::string > _elemental_variables
 
std::vector< std::string > _scalar_variables
 
int _exodus_time_index
 
bool _interpolate_times
 
std::unique_ptr< libMesh::MeshBase_mesh
 
std::unique_ptr< libMesh::EquationSystems_es
 
libMesh::System_system
 
std::unique_ptr< libMesh::MeshFunction_mesh_function
 
std::unique_ptr< libMesh::ExodusII_IO_exodusII_io
 
std::unique_ptr< NumericVector< Number > > _serialized_solution
 
std::unique_ptr< libMesh::EquationSystems_es2
 
libMesh::System_system2
 
std::unique_ptr< libMesh::MeshFunction_mesh_function2
 
std::unique_ptr< NumericVector< Number > > _serialized_solution2
 
Real _interpolation_time
 
Real _interpolation_factor
 
const std::vector< Real > * _exodus_times
 
int _exodus_index1
 
int _exodus_index2
 
const MooseEnum _nodal_variable_order
 
std::vector< Real_scale
 
std::vector< Real_scale_multiplier
 
std::vector< Real_translation
 
RealVectorValue _rotation0_vector
 
Real _rotation0_angle
 
RealTensorValue _r0
 
RealVectorValue _rotation1_vector
 
Real _rotation1_angle
 
RealTensorValue _r1
 
MultiMooseEnum _transformation_order
 
bool _initialized
 
std::map< SubdomainName, SubdomainID_block_name_to_id
 
std::map< SubdomainID, SubdomainName > _block_id_to_name
 
SubProblem_subproblem
 
FEProblemBase_fe_problem
 
SystemBase_sys
 
const THREAD_ID _tid
 
Assembly_assembly
 
const Moose::CoordinateSystemType_coord_sys
 
const bool _duplicate_initial_execution
 
std::set< std::string > _depend_uo
 
const bool & _enabled
 
MooseApp_app
 
const std::string _type
 
const std::string _name
 
const InputParameters_pars
 
Factory_factory
 
ActionFactory_action_factory
 
const ExecFlagEnum_execute_enum
 
const ExecFlagType_current_execute_flag
 
MooseApp_restartable_app
 
const std::string _restartable_system_name
 
const THREAD_ID _restartable_tid
 
const bool _restartable_read_only
 
FEProblemBase_mci_feproblem
 
FEProblemBase_mdi_feproblem
 
MooseApp_pg_moose_app
 
const std::string _prefix
 
FEProblemBase_sc_fe_problem
 
const THREAD_ID _sc_tid
 
const Real_real_zero
 
const VariableValue_scalar_zero
 
const Point & _point_zero
 
const InputParameters_mi_params
 
const std::string _mi_name
 
const MooseObjectName _mi_moose_object_name
 
FEProblemBase_mi_feproblem
 
SubProblem_mi_subproblem
 
const THREAD_ID _mi_tid
 
const Moose::MaterialDataType _material_data_type
 
MaterialData_material_data
 
bool _stateful_allowed
 
bool _get_material_property_called
 
std::vector< std::unique_ptr< PropertyValue > > _default_properties
 
std::unordered_set< unsigned int_material_property_dependencies
 
const MaterialPropertyName _get_suffix
 
const bool _use_interpolated_state
 
const InputParameters_ti_params
 
FEProblemBase_ti_feproblem
 
bool _is_implicit
 
Real_t
 
const Real_t_old
 
int_t_step
 
Real_dt
 
Real_dt_old
 
bool _is_transient
 
enum FunctionParserUtils::FailureMethod _evalerror_behavior
 
const Real _quiet_nan
 
std::vector< GenericReal< is_ad > > _func_params
 
const Real _epsilon
 
bool _enable_jit
 
bool _enable_ad_cache
 
bool _disable_fpoptimizer
 
bool _enable_auto_optimize
 
const Parallel::Communicator & _communicator
 

Static Protected Attributes

static const char * _eval_error_msg []
 
static const std::string _interpolated_old
 
static const std::string _interpolated_older
 

Detailed Description

This Userobject is the base class of Userobjects that generate one random number per timestep and quadrature point in a way that the integral over all random numbers is zero.

This can be used for a concentration fluctuation kernel such as ConservedLangevinNoise, that keeps the total concenration constant.

See also
ConservedUniformNoise

Definition at line 24 of file SolutionRasterizer.h.

Constructor & Destructor Documentation

◆ SolutionRasterizer()

SolutionRasterizer::SolutionRasterizer ( const InputParameters parameters)

Definition at line 35 of file SolutionRasterizer.C.

37  _xyz_input(getParam<FileName>("xyz_input")),
38  _xyz_output(getParam<FileName>("xyz_output")),
39  _variable(getParam<std::string>("variable")),
40  _raster_mode(getParam<MooseEnum>("raster_mode")),
41  _threshold(0.0)
42 {
43  if (_raster_mode == "FILTER")
44  {
45  if (!isParamValid("threshold"))
46  mooseError("Please specify 'threshold' parameter for raster_mode = FILTER");
47  _threshold = getParam<Real>("threshold");
48  }
49 }
bool isParamValid(const std::string &name) const
SolutionUserObject(const InputParameters &parameters)
void mooseError(Args &&... args) const
const InputParameters & parameters() const

◆ ~SolutionRasterizer()

virtual SolutionRasterizer::~SolutionRasterizer ( )
inlinevirtual

Definition at line 31 of file SolutionRasterizer.h.

31 {}

Member Function Documentation

◆ initialSetup()

void SolutionRasterizer::initialSetup ( )
virtual

Initialize the System and Mesh objects for the solution being read.

Reimplemented from SolutionUserObject.

Definition at line 52 of file SolutionRasterizer.C.

53 {
54  // only execute once
55  if (_initialized)
56  return;
57 
58  // initialize parent class
60 
61  // open input XYZ file
62  std::ifstream stream_in(_xyz_input.c_str());
63 
64  // open output XYZ file
65  std::ofstream stream_out(_xyz_output.c_str());
66 
67  std::string line, dummy;
68  Real x, y, z;
69  unsigned int current_line = 0;
70  unsigned int nfilter = 0, len0 = 0;
71  while (std::getline(stream_in, line))
72  {
73  if (current_line < 2)
74  {
75  // dump header
76  stream_out << line << '\n';
77 
78  // get length of line 0 - the amount of space we have to replace the atom count at the end of
79  // filtering
80  if (current_line == 0)
81  len0 = line.size();
82  }
83  else
84  {
85  std::istringstream iss(line);
86 
87  if (iss >> dummy >> x >> y >> z)
88  switch (_raster_mode)
89  {
90  case 0: // MAP
91  stream_out << line << ' ' << pointValue(0.0, Point(x, y, z), _variable) << '\n';
92  break;
93  case 1: // FILTER
94  if (pointValue(0.0, Point(x, y, z), _variable) > _threshold)
95  {
96  stream_out << line << '\n';
97  nfilter++;
98  }
99  break;
100  }
101  }
102 
103  current_line++;
104  }
105 
106  stream_in.close();
107  stream_out.close();
108 
109  // modify output file to fix atom count in line 0
110  if (_raster_mode == "FILTER")
111  {
112  // stringify the new number of atoms
113  std::ostringstream oss;
114  oss << nfilter;
115  std::string newline0 = oss.str();
116 
117  // the new number should always be lower -> shorter than the old one, but we check to be sure
118  if (newline0.size() > len0)
119  {
120  mooseWarning("SolutionRasterizer could not update XYZ atom count in header.");
121  return;
122  }
123 
124  // pad shorter numbers with spaces
125  while (newline0.size() < len0)
126  newline0 += ' ';
127 
128  // inject new number into the file
129  std::ofstream stream_fix(_xyz_output.c_str(), std::ios::binary | std::ios::in | std::ios::out);
130  stream_fix << newline0;
131  stream_fix.close();
132  }
133 }
virtual void initialSetup() override
const std::vector< double > y
void mooseWarning(Args &&... args) const
const std::vector< double > x
DIE A HORRIBLE DEATH HERE typedef LIBMESH_DEFAULT_SCALAR_TYPE Real
Real pointValue(Real t, const Point &p, const unsigned int local_var_index, const std::set< subdomain_id_type > *subdomain_ids=nullptr) const

◆ validParams()

InputParameters SolutionRasterizer::validParams ( )
static

Definition at line 19 of file SolutionRasterizer.C.

20 {
22  params.addClassDescription("Process an XYZ file of atomic coordinates and filter atoms via "
23  "threshold or map variable values.");
24  params.addRequiredParam<FileName>("xyz_input", "XYZ input file.");
25  params.addRequiredParam<FileName>("xyz_output", "XYZ output file.");
26  params.addRequiredParam<std::string>(
27  "variable", "Variable from the mesh file to use for mapping to or filtering of the atoms.");
28  MooseEnum modeEnum("MAP FILTER", "MAP");
29  params.addParam<MooseEnum>("raster_mode", modeEnum, "Rasterization mode (MAP|FILTER).");
30  params.addParam<Real>("threshold",
31  "Accept atoms with a variable value above this threshold in FILTER mode.");
32  return params;
33 }
static InputParameters validParams()
void addParam(const std::string &name, const std::initializer_list< typename T::value_type > &value, const std::string &doc_string)
void addRequiredParam(const std::string &name, const std::string &doc_string)
DIE A HORRIBLE DEATH HERE typedef LIBMESH_DEFAULT_SCALAR_TYPE Real
void addClassDescription(const std::string &doc_string)

Member Data Documentation

◆ _raster_mode

MooseEnum SolutionRasterizer::_raster_mode
protected

Definition at line 42 of file SolutionRasterizer.h.

Referenced by initialSetup(), and SolutionRasterizer().

◆ _threshold

Real SolutionRasterizer::_threshold
protected

Definition at line 44 of file SolutionRasterizer.h.

Referenced by initialSetup(), and SolutionRasterizer().

◆ _variable

std::string SolutionRasterizer::_variable
protected

Definition at line 40 of file SolutionRasterizer.h.

Referenced by initialSetup().

◆ _xyz_input

FileName SolutionRasterizer::_xyz_input
protected

Definition at line 37 of file SolutionRasterizer.h.

Referenced by initialSetup().

◆ _xyz_output

FileName SolutionRasterizer::_xyz_output
protected

Definition at line 38 of file SolutionRasterizer.h.

Referenced by initialSetup().


The documentation for this class was generated from the following files: