libMesh::EigenSparseLinearSolver< T > Class Template Reference

This class provides an interface to Eigen iterative solvers that is compatible with the libMesh LinearSolver<> More...

#include <eigen_sparse_matrix.h>

Inheritance diagram for libMesh::EigenSparseLinearSolver< T >:

Public Member Functions
	EigenSparseLinearSolver (const libMesh::Parallel::Communicator &comm_in)
	Constructor. More...
	~EigenSparseLinearSolver ()
	Destructor. More...
virtual void	clear () override
	Release all memory and clear data structures. More...
virtual void	init (const char *name=nullptr) override
	Initialize data structures if not done so already. More...
virtual std::pair< unsigned int, Real >	solve (SparseMatrix< T > &matrix, NumericVector< T > &solution, NumericVector< T > &rhs, const double tol, const unsigned int m_its) override
	Call the Eigen solver. More...
virtual std::pair< unsigned int, Real >	adjoint_solve (SparseMatrix< T > &matrix, NumericVector< T > &solution, NumericVector< T > &rhs, const double tol, const unsigned int m_its) override
	Call the Eigen solver to solve A^T x = b. More...
virtual std::pair< unsigned int, Real >	solve (SparseMatrix< T > &matrix, SparseMatrix< T > &pc, NumericVector< T > &solution, NumericVector< T > &rhs, const double tol, const unsigned int m_its) override
	Call the Eigen solver. More...
virtual std::pair< unsigned int, Real >	solve (const ShellMatrix< T > &shell_matrix, NumericVector< T > &solution_in, NumericVector< T > &rhs_in, const double tol, const unsigned int m_its) override
	This function solves a system whose matrix is a shell matrix. More...
virtual std::pair< unsigned int, Real >	solve (const ShellMatrix< T > &shell_matrix, const SparseMatrix< T > &precond_matrix, NumericVector< T > &solution_in, NumericVector< T > &rhs_in, const double tol, const unsigned int m_its) override
	This function solves a system whose matrix is a shell matrix, but a sparse matrix is used as preconditioning matrix, this allowing other preconditioners than JACOBI. More...
virtual LinearConvergenceReason	get_converged_reason () const override
bool	initialized () const
virtual void	init_names (const System &)
	Apply names to the system to be solved. More...
SolverType	solver_type () const
void	set_solver_type (const SolverType st)
	Sets the type of solver to use. More...
PreconditionerType	preconditioner_type () const
void	set_preconditioner_type (const PreconditionerType pct)
	Sets the type of preconditioner to use. More...
void	attach_preconditioner (Preconditioner< T > *preconditioner)
	Attaches a Preconditioner object to be used. More...
virtual void	reuse_preconditioner (bool)
	Set the same_preconditioner flag, which indicates if we reuse the same preconditioner for subsequent solves. More...
bool	get_same_preconditioner ()
virtual void	restrict_solve_to (const std::vector< unsigned int > *const dofs, const SubsetSolveMode subset_solve_mode=SUBSET_ZERO)
	After calling this method, all successive solves will be restricted to the given set of dofs, which must contain local dofs on each processor only and not contain any duplicates. More...
std::pair< unsigned int, Real >	solve (SparseMatrix< T > &matrix, SparseMatrix< T > *precond_matrix, NumericVector< T > &, NumericVector< T > &, const double, const unsigned int)
	This function calls the solver "_solver_type" preconditioned with the "_preconditioner_type" preconditioner. More...
std::pair< unsigned int, Real >	solve (const ShellMatrix< T > &matrix, const SparseMatrix< T > *precond_matrix, NumericVector< T > &, NumericVector< T > &, const double, const unsigned int)
	This function solves a system whose matrix is a shell matrix, but an optional sparse matrix may be used as preconditioning matrix. More...
virtual void	print_converged_reason () const
	Prints a useful message about why the latest linear solve con(di)verged. More...
void	set_solver_configuration (SolverConfiguration &solver_configuration)
	Set the solver configuration object. More...
const Parallel::Communicator &	comm () const
processor_id_type	n_processors () const
processor_id_type	processor_id () const

Static Public Member Functions
static std::unique_ptr< LinearSolver< T > >	build (const libMesh::Parallel::Communicator &comm_in, const SolverPackage solver_package=libMesh::default_solver_package())
	Builds a LinearSolver using the linear solver package specified by solver_package. More...
static std::string	get_info ()
	Gets a string containing the reference information. More...
static void	print_info (std::ostream &out=libMesh::out)
	Prints the reference information, by default to libMesh::out. More...
static unsigned int	n_objects ()
	Prints the number of outstanding (created, but not yet destroyed) objects. More...
static void	enable_print_counter_info ()
	Methods to enable/disable the reference counter output from print_info() More...
static void	disable_print_counter_info ()

Protected Types
typedef std::map< std::string, std::pair< unsigned int, unsigned int > >	Counts
	Data structure to log the information. More...

Protected Member Functions
void	increment_constructor_count (const std::string &name)
	Increments the construction counter. More...
void	increment_destructor_count (const std::string &name)
	Increments the destruction counter. More...

Protected Attributes
SolverType	_solver_type
	Enum stating which type of iterative solver to use. More...
PreconditionerType	_preconditioner_type
	Enum stating with type of preconditioner to use. More...
bool	_is_initialized
	Flag indicating if the data structures have been initialized. More...
Preconditioner< T > *	_preconditioner
	Holds the Preconditioner object to be used for the linear solves. More...
bool	same_preconditioner
	Boolean flag to indicate whether we want to use an identical preconditioner to the previous solve. More...
SolverConfiguration *	_solver_configuration
	Optionally store a SolverOptions object that can be used to set parameters like solver type, tolerances and iteration limits. More...
const Parallel::Communicator &	_communicator

Static Protected Attributes
static Counts	_counts
	Actually holds the data. More...
static Threads::atomic< unsigned int >	_n_objects
	The number of objects. More...
static Threads::spin_mutex	_mutex
	Mutual exclusion object to enable thread-safe reference counting. More...
static bool	_enable_print_counter = true
	Flag to control whether reference count information is printed when print_info is called. More...

Private Member Functions
void	set_eigen_preconditioner_type ()
	Tells Eigen to use the user-specified preconditioner stored in _preconditioner_type. More...

Static Private Member Functions
static std::map< Eigen::ComputationInfo, LinearConvergenceReason >	build_map ()
	Static function used to initialize _convergence_reasons map. More...

Private Attributes
Eigen::ComputationInfo	_comp_info
	Store the result of the last solve. More...

Static Private Attributes
static std::map< Eigen::ComputationInfo, LinearConvergenceReason >	_convergence_reasons = EigenSparseLinearSolver<T>::build_map()
	Static map between Eigen ComputationInfo enumerations and libMesh LinearConvergenceReason enumerations. More...

Detailed Description

template<typename T>
class libMesh::EigenSparseLinearSolver< T >

This class provides an interface to Eigen iterative solvers that is compatible with the libMesh LinearSolver<>

Author

Benjamin Kirk

Date

2013

Definition at line 43 of file eigen_sparse_matrix.h.

Member Typedef Documentation

Counts

typedef std::map<std::string, std::pair<unsigned int, unsigned int> > libMesh::ReferenceCounter::Counts

protectedinherited

Data structure to log the information.

The log is identified by the class name.

Definition at line 117 of file reference_counter.h.

Constructor & Destructor Documentation

EigenSparseLinearSolver()

template<typename T>

libMesh::EigenSparseLinearSolver< T >::EigenSparseLinearSolver

(

const libMesh::Parallel::Communicator &

comm_in

)

Constructor.

Initializes Eigen data structures

Definition at line 43 of file eigen_sparse_linear_solver.C.

                                                              :
  LinearSolver<T>(comm_in),
  _comp_info(Eigen::Success)
{
  // The GMRES _solver_type can be used in EigenSparseLinearSolver,
  // however, the GMRES iterative solver is currently in the Eigen
  // "unsupported" directory, so we use BICGSTAB as our default.
  this->_solver_type = BICGSTAB;
}

References libMesh::LinearSolver< T >::_solver_type, and libMesh::BICGSTAB.

~EigenSparseLinearSolver()

template<typename T >

libMesh::EigenSparseLinearSolver< T >::~EigenSparseLinearSolver ( )

inline

Destructor.

Definition at line 176 of file eigen_sparse_linear_solver.h.

{
  this->clear ();
}

Member Function Documentation

adjoint_solve()

template<typename T >

std::pair< unsigned int, Real > libMesh::EigenSparseLinearSolver< T >::adjoint_solve ( SparseMatrix< T > &  matrix, NumericVector< T > &  solution, NumericVector< T > &  rhs, const double  tol, const unsigned int  m_its  )

overridevirtual

Call the Eigen solver to solve A^T x = b.

Reimplemented from libMesh::LinearSolver< T >.

Definition at line 233 of file eigen_sparse_linear_solver.C.

{
  LOG_SCOPE("adjoint_solve()", "EigenSparseLinearSolver");
 
  libmesh_experimental();
  EigenSparseMatrix<T> mat_trans(this->comm());
  matrix_in.get_transpose(mat_trans);
 
  std::pair<unsigned int, Real> retval = this->solve (mat_trans,
                                                      solution_in,
                                                      rhs_in,
                                                      tol,
                                                      m_its);
 
  return retval;
}

References libMesh::SparseMatrix< T >::get_transpose().

attach_preconditioner()

template<typename T>

void libMesh::LinearSolver< T >::attach_preconditioner ( Preconditioner< T > *  preconditioner )

inherited

Attaches a Preconditioner object to be used.

Definition at line 118 of file linear_solver.C.

{
  if (this->_is_initialized)
    libmesh_error_msg("Preconditioner must be attached before the solver is initialized!");
 
  _preconditioner_type = SHELL_PRECOND;
  _preconditioner = preconditioner;
}

build()

template<typename T >

std::unique_ptr< LinearSolver< T > > libMesh::LinearSolver< T >::build ( const libMesh::Parallel::Communicator &  comm_in, const SolverPackage  solver_package = libMesh::default_solver_package()  )

staticinherited

Builds a LinearSolver using the linear solver package specified by solver_package.

Definition at line 57 of file linear_solver.C.

{
  // Avoid unused parameter warnings when no solver packages are enabled.
  libmesh_ignore(comm);
 
  // Build the appropriate solver
  switch (solver_package)
    {
#ifdef LIBMESH_HAVE_LASPACK
    case LASPACK_SOLVERS:
      return libmesh_make_unique<LaspackLinearSolver<T>>(comm);
#endif
 
 
#ifdef LIBMESH_HAVE_PETSC
    case PETSC_SOLVERS:
      return libmesh_make_unique<PetscLinearSolver<T>>(comm);
#endif
 
 
#ifdef LIBMESH_TRILINOS_HAVE_AZTECOO
    case TRILINOS_SOLVERS:
      return libmesh_make_unique<AztecLinearSolver<T>>(comm);
#endif
 
 
#ifdef LIBMESH_HAVE_EIGEN
    case EIGEN_SOLVERS:
      return libmesh_make_unique<EigenSparseLinearSolver<T>>(comm);
#endif
 
    default:
      libmesh_error_msg("ERROR:  Unrecognized solver package: " << solver_package);
    }
 
  return std::unique_ptr<LinearSolver<T>>();
}

Referenced by libMesh::ImplicitSystem::get_linear_solver(), and libMesh::TimeSolver::init().

build_map()

template<typename T>

static std::map<Eigen::ComputationInfo, LinearConvergenceReason> libMesh::EigenSparseLinearSolver< T >::build_map ( )

inlinestaticprivate

Static function used to initialize _convergence_reasons map.

Definition at line 152 of file eigen_sparse_linear_solver.h.

  {
    std::map<Eigen::ComputationInfo, LinearConvergenceReason> ret;
    ret[Eigen::Success]        = CONVERGED_ITS;
    ret[Eigen::NumericalIssue] = DIVERGED_BREAKDOWN;
    ret[Eigen::NoConvergence]  = DIVERGED_ITS;
    ret[Eigen::InvalidInput]   = DIVERGED_NULL;
    return ret;
  }

References libMesh::CONVERGED_ITS, libMesh::DIVERGED_BREAKDOWN, libMesh::DIVERGED_ITS, and libMesh::DIVERGED_NULL.

clear()

template<typename T >

void libMesh::EigenSparseLinearSolver< T >::clear ( )

overridevirtual

Release all memory and clear data structures.

Reimplemented from libMesh::LinearSolver< T >.

Definition at line 56 of file eigen_sparse_linear_solver.C.

{
  if (this->initialized())
    {
      this->_is_initialized = false;
 
      this->_solver_type         = BICGSTAB;
      this->_preconditioner_type = ILU_PRECOND;
    }
}

References libMesh::libMeshPrivateData::_is_initialized, libMesh::BICGSTAB, libMesh::ILU_PRECOND, and libMesh::initialized().

comm()

const Parallel::Communicator& libMesh::ParallelObject::comm ( ) const

inlineinherited

Returns

A reference to the Parallel::Communicator object used by this mesh.

Definition at line 94 of file parallel_object.h.

  { return _communicator; }

References libMesh::ParallelObject::_communicator.

Referenced by libMesh::__libmesh_petsc_diff_solver_jacobian(), libMesh::__libmesh_petsc_diff_solver_monitor(), libMesh::__libmesh_petsc_diff_solver_residual(), libMesh::__libmesh_tao_equality_constraints(), libMesh::__libmesh_tao_equality_constraints_jacobian(), libMesh::__libmesh_tao_gradient(), libMesh::__libmesh_tao_hessian(), libMesh::__libmesh_tao_inequality_constraints(), libMesh::__libmesh_tao_inequality_constraints_jacobian(), libMesh::__libmesh_tao_objective(), libMesh::MeshRefinement::_coarsen_elements(), libMesh::ExactSolution::_compute_error(), libMesh::UniformRefinementEstimator::_estimate_error(), libMesh::BoundaryInfo::_find_id_maps(), libMesh::PetscLinearSolver< Number >::_petsc_shell_matrix_get_diagonal(), libMesh::SlepcEigenSolver< libMesh::Number >::_petsc_shell_matrix_get_diagonal(), libMesh::PetscLinearSolver< Number >::_petsc_shell_matrix_mult(), libMesh::SlepcEigenSolver< libMesh::Number >::_petsc_shell_matrix_mult(), libMesh::PetscLinearSolver< Number >::_petsc_shell_matrix_mult_add(), libMesh::EquationSystems::_read_impl(), libMesh::MeshRefinement::_refine_elements(), libMesh::MeshRefinement::_smooth_flags(), libMesh::DofMap::add_constraints_to_send_list(), add_cube_convex_hull_to_mesh(), libMesh::PetscDMWrapper::add_dofs_helper(), libMesh::PetscDMWrapper::add_dofs_to_section(), libMesh::TransientRBConstruction::add_IC_to_RB_space(), libMesh::ImplicitSystem::add_matrix(), libMesh::RBConstruction::add_scaled_matrix_and_vector(), libMesh::DynaIO::add_spline_constraints(), libMesh::System::add_vector(), libMesh::UnstructuredMesh::all_second_order(), libMesh::MeshTools::Modification::all_tri(), libMesh::LaplaceMeshSmoother::allgather_graph(), libMesh::DofMap::allgather_recursive_constraints(), libMesh::TransientRBConstruction::allocate_data_structures(), libMesh::RBConstruction::allocate_data_structures(), libMesh::TransientRBConstruction::assemble_affine_expansion(), libMesh::FEMSystem::assemble_qoi(), libMesh::MeshCommunication::assign_global_indices(), libMesh::DofMap::attach_matrix(), libMesh::MeshTools::Generation::build_extrusion(), libMesh::BoundaryInfo::build_node_list_from_side_list(), libMesh::EquationSystems::build_parallel_elemental_solution_vector(), libMesh::EquationSystems::build_parallel_solution_vector(), libMesh::PetscDMWrapper::build_section(), libMesh::PetscDMWrapper::build_sf(), libMesh::System::calculate_norm(), libMesh::DofMap::check_dirichlet_bcid_consistency(), libMesh::RBConstruction::compute_Fq_representor_innerprods(), libMesh::RBConstruction::compute_max_error_bound(), libMesh::Nemesis_IO_Helper::compute_num_global_elem_blocks(), libMesh::Nemesis_IO_Helper::compute_num_global_nodesets(), libMesh::Nemesis_IO_Helper::compute_num_global_sidesets(), libMesh::RBConstruction::compute_output_dual_innerprods(), libMesh::RBConstruction::compute_residual_dual_norm_slow(), libMesh::RBSCMConstruction::compute_SCM_bounds_on_training_set(), libMesh::Problem_Interface::computeF(), libMesh::Problem_Interface::computeJacobian(), libMesh::Problem_Interface::computePreconditioner(), libMesh::ExodusII_IO::copy_elemental_solution(), libMesh::ExodusII_IO::copy_scalar_solution(), libMesh::MeshTools::correct_node_proc_ids(), libMesh::MeshTools::create_bounding_box(), libMesh::DofMap::create_dof_constraints(), libMesh::MeshTools::create_nodal_bounding_box(), libMesh::MeshRefinement::create_parent_error_vector(), libMesh::MeshTools::create_processor_bounding_box(), libMesh::MeshTools::create_subdomain_bounding_box(), libMesh::MeshCommunication::delete_remote_elements(), libMesh::DofMap::distribute_dofs(), DMlibMeshFunction(), DMlibMeshJacobian(), DMlibMeshSetSystem_libMesh(), DMVariableBounds_libMesh(), libMesh::DTKSolutionTransfer::DTKSolutionTransfer(), libMesh::MeshRefinement::eliminate_unrefined_patches(), libMesh::RBEIMConstruction::enrich_RB_space(), libMesh::TransientRBConstruction::enrich_RB_space(), libMesh::RBConstruction::enrich_RB_space(), libMesh::EpetraVector< T >::EpetraVector(), AssembleOptimization::equality_constraints(), libMesh::WeightedPatchRecoveryErrorEstimator::estimate_error(), libMesh::PatchRecoveryErrorEstimator::estimate_error(), libMesh::JumpErrorEstimator::estimate_error(), libMesh::AdjointRefinementEstimator::estimate_error(), libMesh::ExactErrorEstimator::estimate_error(), libMesh::RBEIMConstruction::evaluate_mesh_function(), libMesh::MeshRefinement::flag_elements_by_elem_fraction(), libMesh::MeshRefinement::flag_elements_by_error_fraction(), libMesh::MeshRefinement::flag_elements_by_error_tolerance(), libMesh::MeshRefinement::flag_elements_by_mean_stddev(), libMesh::MeshRefinement::flag_elements_by_nelem_target(), libMesh::DofMap::gather_constraints(), libMesh::MeshfreeInterpolation::gather_remote_data(), libMesh::CondensedEigenSystem::get_eigenpair(), libMesh::DofMap::get_info(), libMesh::ImplicitSystem::get_linear_solver(), AssembleOptimization::inequality_constraints(), AssembleOptimization::inequality_constraints_jacobian(), libMesh::LocationMap< T >::init(), libMesh::TimeSolver::init(), libMesh::SystemSubsetBySubdomain::init(), libMesh::PetscDMWrapper::init_and_attach_petscdm(), libMesh::EigenSystem::init_matrices(), libMesh::OptimizationSystem::initialize_equality_constraints_storage(), libMesh::OptimizationSystem::initialize_inequality_constraints_storage(), libMesh::RBEIMConstruction::initialize_rb_construction(), integrate_function(), libMesh::MeshTools::libmesh_assert_consistent_distributed(), libMesh::MeshTools::libmesh_assert_consistent_distributed_nodes(), libMesh::MeshTools::libmesh_assert_contiguous_dof_ids(), libMesh::MeshTools::libmesh_assert_parallel_consistent_new_node_procids(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Elem >(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Node >(), libMesh::MeshTools::libmesh_assert_topology_consistent_procids< Node >(), libMesh::MeshTools::libmesh_assert_valid_boundary_ids(), libMesh::MeshTools::libmesh_assert_valid_dof_ids(), libMesh::MeshTools::libmesh_assert_valid_neighbors(), libMesh::DistributedMesh::libmesh_assert_valid_parallel_flags(), libMesh::DistributedMesh::libmesh_assert_valid_parallel_object_ids(), libMesh::DistributedMesh::libmesh_assert_valid_parallel_p_levels(), libMesh::MeshTools::libmesh_assert_valid_refinement_flags(), libMesh::MeshTools::libmesh_assert_valid_unique_ids(), libMesh::libmesh_petsc_preconditioner_apply(), libMesh::libmesh_petsc_snes_fd_residual(), libMesh::libmesh_petsc_snes_jacobian(), libMesh::libmesh_petsc_snes_mffd_residual(), libMesh::libmesh_petsc_snes_postcheck(), libMesh::libmesh_petsc_snes_residual(), libMesh::libmesh_petsc_snes_residual_helper(), libMesh::MeshRefinement::limit_level_mismatch_at_edge(), libMesh::MeshRefinement::limit_level_mismatch_at_node(), libMesh::MeshRefinement::limit_overrefined_boundary(), libMesh::MeshRefinement::limit_underrefined_boundary(), main(), libMesh::MeshRefinement::make_coarsening_compatible(), libMesh::MeshCommunication::make_elems_parallel_consistent(), libMesh::MeshRefinement::make_flags_parallel_consistent(), libMesh::MeshCommunication::make_new_node_proc_ids_parallel_consistent(), libMesh::MeshCommunication::make_new_nodes_parallel_consistent(), libMesh::MeshCommunication::make_node_ids_parallel_consistent(), libMesh::MeshCommunication::make_node_proc_ids_parallel_consistent(), libMesh::MeshCommunication::make_node_unique_ids_parallel_consistent(), libMesh::MeshCommunication::make_nodes_parallel_consistent(), libMesh::MeshCommunication::make_p_levels_parallel_consistent(), libMesh::MeshRefinement::make_refinement_compatible(), libMesh::TransientRBConstruction::mass_matrix_scaled_matvec(), libMesh::FEMSystem::mesh_position_set(), LinearElasticityWithContact::move_mesh(), libMesh::DistributedMesh::n_active_elem(), libMesh::MeshTools::n_active_levels(), 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libMesh::CheckpointIO::read_header(), libMesh::XdrIO::read_header(), libMesh::System::read_header(), libMesh::RBEvaluation::read_in_vectors_from_multiple_files(), libMesh::System::read_legacy_data(), libMesh::TransientRBConstruction::read_riesz_representors_from_files(), libMesh::RBConstruction::read_riesz_representors_from_files(), libMesh::System::read_SCALAR_dofs(), libMesh::XdrIO::read_serialized_bc_names(), libMesh::XdrIO::read_serialized_bcs_helper(), libMesh::System::read_serialized_blocked_dof_objects(), libMesh::XdrIO::read_serialized_connectivity(), libMesh::XdrIO::read_serialized_nodes(), libMesh::XdrIO::read_serialized_nodesets(), libMesh::XdrIO::read_serialized_subdomain_names(), libMesh::System::read_serialized_vector(), libMesh::MeshRefinement::refine_and_coarsen_elements(), libMesh::DistributedMesh::renumber_dof_objects(), LinearElasticityWithContact::residual_and_jacobian(), OverlappingAlgebraicGhostingTest::run_ghosting_test(), OverlappingCouplingGhostingTest::run_sparsity_pattern_test(), libMesh::DofMap::scatter_constraints(), libMesh::CheckpointIO::select_split_config(), libMesh::TransientRBConstruction::set_error_temporal_data(), libMesh::RBEIMConstruction::set_explicit_sys_subvector(), libMesh::DofMap::set_nonlocal_dof_objects(), libMesh::PetscDMWrapper::set_point_range_in_section(), libMesh::PetscDiffSolver::setup_petsc_data(), libMesh::LaplaceMeshSmoother::smooth(), libMesh::split_mesh(), libMesh::BoundaryInfo::sync(), libMesh::MeshRefinement::test_level_one(), MeshfunctionDFEM::test_mesh_function_dfem(), MeshfunctionDFEM::test_mesh_function_dfem_grad(), MeshFunctionTest::test_p_level(), libMesh::MeshRefinement::test_unflagged(), SystemsTest::testBlockRestrictedVarNDofs(), PointLocatorTest::testLocator(), BoundaryInfoTest::testMesh(), SystemsTest::testProjectCubeWithMeshFunction(), CheckpointIOTest::testSplitter(), libMesh::MeshTools::total_weight(), libMesh::MeshFunctionSolutionTransfer::transfer(), libMesh::MeshfreeSolutionTransfer::transfer(), libMesh::TransientRBConstruction::truth_assembly(), libMesh::RBConstruction::truth_assembly(), libMesh::MeshRefinement::uniformly_coarsen(), libMesh::TransientRBConstruction::update_RB_initial_condition_all_N(), libMesh::RBEIMConstruction::update_RB_system_matrices(), libMesh::TransientRBConstruction::update_RB_system_matrices(), libMesh::RBConstruction::update_RB_system_matrices(), libMesh::TransientRBConstruction::update_residual_terms(), libMesh::RBConstruction::update_residual_terms(), libMesh::NameBasedIO::write(), libMesh::XdrIO::write(), libMesh::VTKIO::write_nodal_data(), libMesh::RBEvaluation::write_out_vectors(), libMesh::TransientRBConstruction::write_riesz_representors_to_files(), libMesh::RBConstruction::write_riesz_representors_to_files(), libMesh::System::write_SCALAR_dofs(), libMesh::XdrIO::write_serialized_bcs_helper(), libMesh::System::write_serialized_blocked_dof_objects(), libMesh::XdrIO::write_serialized_connectivity(), libMesh::XdrIO::write_serialized_nodes(), libMesh::XdrIO::write_serialized_nodesets(), libMesh::RBDataSerialization::RBEvaluationSerialization::write_to_file(), libMesh::RBDataSerialization::TransientRBEvaluationSerialization::write_to_file(), libMesh::RBDataSerialization::RBEIMEvaluationSerialization::write_to_file(), and libMesh::RBDataSerialization::RBSCMEvaluationSerialization::write_to_file().

disable_print_counter_info()

void libMesh::ReferenceCounter::disable_print_counter_info ( )

staticinherited

Definition at line 106 of file reference_counter.C.

{
  _enable_print_counter = false;
  return;
}

References libMesh::ReferenceCounter::_enable_print_counter.

Referenced by libMesh::LibMeshInit::LibMeshInit().

enable_print_counter_info()

void libMesh::ReferenceCounter::enable_print_counter_info ( )

staticinherited

Methods to enable/disable the reference counter output from print_info()

Definition at line 100 of file reference_counter.C.

{
  _enable_print_counter = true;
  return;
}

References libMesh::ReferenceCounter::_enable_print_counter.

get_converged_reason()

template<typename T >

LinearConvergenceReason libMesh::EigenSparseLinearSolver< T >::get_converged_reason ( ) const

overridevirtual

Returns

The solver's convergence flag

Implements libMesh::LinearSolver< T >.

Definition at line 318 of file eigen_sparse_linear_solver.C.

{
  auto it = _convergence_reasons.find(_comp_info);
 
  // If later versions of Eigen start returning new enumerations,
  // we'll need to add them to the map...
  if (it == _convergence_reasons.end())
    {
      libmesh_warning("Warning: unknown Eigen::ComputationInfo: " \
                      << _comp_info \
                      << " returning CONVERGED_ITS." \
                      << std::endl);
      return CONVERGED_ITS;
    }
  else
    return it->second;
}

References libMesh::CONVERGED_ITS.

get_info()

std::string libMesh::ReferenceCounter::get_info ( )

staticinherited

Gets a string containing the reference information.

Definition at line 47 of file reference_counter.C.

{
#if defined(LIBMESH_ENABLE_REFERENCE_COUNTING) && defined(DEBUG)
 
  std::ostringstream oss;
 
  oss << '\n'
      << " ---------------------------------------------------------------------------- \n"
      << "| Reference count information                                                |\n"
      << " ---------------------------------------------------------------------------- \n";
 
  for (const auto & pr : _counts)
    {
      const std::string name(pr.first);
      const unsigned int creations    = pr.second.first;
      const unsigned int destructions = pr.second.second;
 
      oss << "| " << name << " reference count information:\n"
          << "|  Creations:    " << creations    << '\n'
          << "|  Destructions: " << destructions << '\n';
    }
 
  oss << " ---------------------------------------------------------------------------- \n";
 
  return oss.str();
 
#else
 
  return "";
 
#endif
}

References libMesh::ReferenceCounter::_counts, and libMesh::Quality::name().

Referenced by libMesh::ReferenceCounter::print_info().

get_same_preconditioner()

template<typename T >

bool libMesh::LinearSolver< T >::get_same_preconditioner ( )

inlineinherited

Returns

same_preconditioner, which indicates if we reuse the same preconditioner for subsequent solves.

Definition at line 321 of file linear_solver.h.

{
  return same_preconditioner;
}

increment_constructor_count()

void libMesh::ReferenceCounter::increment_constructor_count ( const std::string &  name )

inlineprotectedinherited

Increments the construction counter.

Should be called in the constructor of any derived class that will be reference counted.

Definition at line 181 of file reference_counter.h.

{
  Threads::spin_mutex::scoped_lock lock(Threads::spin_mtx);
  std::pair<unsigned int, unsigned int> & p = _counts[name];
 
  p.first++;
}

References libMesh::ReferenceCounter::_counts, libMesh::Quality::name(), and libMesh::Threads::spin_mtx.

Referenced by libMesh::ReferenceCountedObject< RBParametrized >::ReferenceCountedObject().

increment_destructor_count()

void libMesh::ReferenceCounter::increment_destructor_count ( const std::string &  name )

inlineprotectedinherited

Increments the destruction counter.

Should be called in the destructor of any derived class that will be reference counted.

Definition at line 194 of file reference_counter.h.

{
  Threads::spin_mutex::scoped_lock lock(Threads::spin_mtx);
  std::pair<unsigned int, unsigned int> & p = _counts[name];
 
  p.second++;
}

References libMesh::ReferenceCounter::_counts, libMesh::Quality::name(), and libMesh::Threads::spin_mtx.

Referenced by libMesh::ReferenceCountedObject< RBParametrized >::~ReferenceCountedObject().

init()

template<typename T >

void libMesh::EigenSparseLinearSolver< T >::init ( const char *  name = nullptr )

overridevirtual

Initialize data structures if not done so already.

Implements libMesh::LinearSolver< T >.

Definition at line 70 of file eigen_sparse_linear_solver.C.

{
  // Initialize the data structures if not done so already.
  if (!this->initialized())
    {
      this->_is_initialized = true;
    }
}

References libMesh::libMeshPrivateData::_is_initialized, and libMesh::initialized().

init_names()

template<typename T>

virtual void libMesh::LinearSolver< T >::init_names ( const System &  )

inlinevirtualinherited

Apply names to the system to be solved.

For most packages this is a no-op; for PETSc this sets an option prefix from the system name and sets field names from the system's variable names.

Since field names are applied to DoF numberings, this method must be called again after any System reinit.

Reimplemented in libMesh::PetscLinearSolver< T >, and libMesh::PetscLinearSolver< Number >.

Definition at line 116 of file linear_solver.h.

{}

initialized()

template<typename T>

bool libMesh::LinearSolver< T >::initialized ( ) const

inlineinherited

Returns

true if the data structures are initialized, false otherwise.

Definition at line 95 of file linear_solver.h.

{ return _is_initialized; }

n_objects()

static unsigned int libMesh::ReferenceCounter::n_objects ( )

inlinestaticinherited

Prints the number of outstanding (created, but not yet destroyed) objects.

Definition at line 83 of file reference_counter.h.

  { return _n_objects; }

References libMesh::ReferenceCounter::_n_objects.

n_processors()

processor_id_type libMesh::ParallelObject::n_processors ( ) const

inlineinherited

Returns

The number of processors in the group.

Definition at line 100 of file parallel_object.h.

  { return cast_int<processor_id_type>(_communicator.size()); }

References libMesh::ParallelObject::_communicator.

Referenced by libMesh::BoundaryInfo::_find_id_maps(), libMesh::DofMap::add_constraints_to_send_list(), libMesh::PetscDMWrapper::add_dofs_to_section(), libMesh::DistributedMesh::add_elem(), libMesh::DofMap::add_neighbors_to_send_list(), libMesh::DistributedMesh::add_node(), libMesh::LaplaceMeshSmoother::allgather_graph(), libMesh::DofMap::allgather_recursive_constraints(), libMesh::FEMSystem::assembly(), libMesh::AztecLinearSolver< T >::AztecLinearSolver(), libMesh::BoundaryInfo::build_node_list_from_side_list(), libMesh::EquationSystems::build_parallel_elemental_solution_vector(), libMesh::DistributedMesh::clear(), libMesh::Nemesis_IO_Helper::compute_border_node_ids(), libMesh::Nemesis_IO_Helper::construct_nemesis_filename(), libMesh::ExodusII_IO::copy_scalar_solution(), libMesh::UnstructuredMesh::create_pid_mesh(), libMesh::MeshTools::create_processor_bounding_box(), libMesh::DofMap::distribute_dofs(), libMesh::DofMap::distribute_local_dofs_node_major(), libMesh::DofMap::distribute_local_dofs_var_major(), libMesh::EnsightIO::EnsightIO(), libMesh::SystemSubsetBySubdomain::init(), libMesh::PetscDMWrapper::init_and_attach_petscdm(), libMesh::Nemesis_IO_Helper::initialize(), libMesh::DistributedMesh::insert_elem(), libMesh::MeshTools::libmesh_assert_contiguous_dof_ids(), libMesh::MeshTools::libmesh_assert_parallel_consistent_new_node_procids(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Elem >(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Node >(), libMesh::MeshTools::libmesh_assert_topology_consistent_procids< Node >(), libMesh::MeshTools::libmesh_assert_valid_boundary_ids(), libMesh::MeshTools::libmesh_assert_valid_dof_ids(), libMesh::MeshTools::libmesh_assert_valid_neighbors(), libMesh::MeshTools::libmesh_assert_valid_refinement_flags(), libMesh::DofMap::local_variable_indices(), libMesh::MeshRefinement::make_coarsening_compatible(), libMesh::MeshBase::partition(), libMesh::System::point_gradient(), libMesh::System::point_hessian(), libMesh::System::point_value(), libMesh::DofMap::prepare_send_list(), libMesh::DofMap::print_dof_constraints(), libMesh::NameBasedIO::read(), libMesh::Nemesis_IO::read(), libMesh::CheckpointIO::read(), libMesh::CheckpointIO::read_connectivity(), libMesh::XdrIO::read_header(), libMesh::CheckpointIO::read_nodes(), libMesh::System::read_parallel_data(), libMesh::System::read_SCALAR_dofs(), libMesh::System::read_serialized_blocked_dof_objects(), libMesh::System::read_serialized_vector(), libMesh::DistributedMesh::renumber_dof_objects(), OverlappingFunctorTest::run_partitioner_test(), libMesh::DofMap::scatter_constraints(), libMesh::DofMap::set_nonlocal_dof_objects(), libMesh::PetscDMWrapper::set_point_range_in_section(), CheckpointIOTest::testSplitter(), WriteVecAndScalar::testWrite(), libMesh::MeshRefinement::uniformly_coarsen(), libMesh::DistributedMesh::update_parallel_id_counts(), libMesh::GMVIO::write_binary(), libMesh::GMVIO::write_discontinuous_gmv(), libMesh::VTKIO::write_nodal_data(), libMesh::System::write_parallel_data(), libMesh::System::write_SCALAR_dofs(), libMesh::XdrIO::write_serialized_bcs_helper(), libMesh::System::write_serialized_blocked_dof_objects(), libMesh::XdrIO::write_serialized_connectivity(), libMesh::XdrIO::write_serialized_nodes(), and libMesh::XdrIO::write_serialized_nodesets().

preconditioner_type()

template<typename T >

PreconditionerType libMesh::LinearSolver< T >::preconditioner_type ( ) const

inherited

Returns

The type of preconditioner to use.

Definition at line 98 of file linear_solver.C.

{
  if (_preconditioner)
    return _preconditioner->type();
 
  return _preconditioner_type;
}

print_converged_reason()

template<typename T >

void libMesh::LinearSolver< T >::print_converged_reason ( ) const

virtualinherited

Prints a useful message about why the latest linear solve con(di)verged.

Reimplemented in libMesh::AztecLinearSolver< T >, and libMesh::LaspackLinearSolver< T >.

Definition at line 170 of file linear_solver.C.

{
  LinearConvergenceReason reason = this->get_converged_reason();
  libMesh::out << "Linear solver convergence/divergence reason: " << Utility::enum_to_string(reason) << std::endl;
}

print_info()

void libMesh::ReferenceCounter::print_info ( std::ostream &  out = libMesh::out )

staticinherited

Prints the reference information, by default to libMesh::out.

Definition at line 87 of file reference_counter.C.

{
  if (_enable_print_counter)
    out_stream << ReferenceCounter::get_info();
}

References libMesh::ReferenceCounter::_enable_print_counter, and libMesh::ReferenceCounter::get_info().

processor_id()

processor_id_type libMesh::ParallelObject::processor_id ( ) const

inlineinherited

Returns

The rank of this processor in the group.

Definition at line 106 of file parallel_object.h.

  { return cast_int<processor_id_type>(_communicator.rank()); }

References libMesh::ParallelObject::_communicator.

Referenced by libMesh::BoundaryInfo::_find_id_maps(), libMesh::EquationSystems::_read_impl(), libMesh::PetscDMWrapper::add_dofs_to_section(), libMesh::DistributedMesh::add_elem(), libMesh::BoundaryInfo::add_elements(), libMesh::DofMap::add_neighbors_to_send_list(), libMesh::DistributedMesh::add_node(), libMesh::UnstructuredMesh::all_second_order(), libMesh::MeshTools::Modification::all_tri(), libMesh::DofMap::allgather_recursive_constraints(), libMesh::FEMSystem::assembly(), libMesh::Nemesis_IO_Helper::build_element_and_node_maps(), libMesh::InfElemBuilder::build_inf_elem(), libMesh::BoundaryInfo::build_node_list_from_side_list(), libMesh::EquationSystems::build_parallel_elemental_solution_vector(), libMesh::DistributedMesh::clear(), libMesh::ExodusII_IO_Helper::close(), libMesh::Nemesis_IO_Helper::compute_border_node_ids(), libMesh::Nemesis_IO_Helper::compute_communication_map_parameters(), libMesh::Nemesis_IO_Helper::compute_internal_and_border_elems_and_internal_nodes(), libMesh::RBConstruction::compute_max_error_bound(), libMesh::Nemesis_IO_Helper::compute_node_communication_maps(), libMesh::Nemesis_IO_Helper::compute_num_global_elem_blocks(), libMesh::Nemesis_IO_Helper::compute_num_global_nodesets(), libMesh::Nemesis_IO_Helper::compute_num_global_sidesets(), libMesh::Nemesis_IO_Helper::construct_nemesis_filename(), libMesh::ExodusII_IO::copy_scalar_solution(), libMesh::MeshTools::correct_node_proc_ids(), libMesh::ExodusII_IO_Helper::create(), libMesh::DistributedMesh::delete_elem(), libMesh::DistributedMesh::delete_node(), libMesh::MeshCommunication::delete_remote_elements(), libMesh::DofMap::distribute_dofs(), libMesh::DofMap::distribute_local_dofs_node_major(), libMesh::DofMap::distribute_local_dofs_var_major(), libMesh::DistributedMesh::DistributedMesh(), libMesh::DofMap::end_dof(), libMesh::DofMap::end_old_dof(), libMesh::EnsightIO::EnsightIO(), libMesh::RBEIMConstruction::evaluate_mesh_function(), libMesh::MeshFunction::find_element(), libMesh::MeshFunction::find_elements(), libMesh::UnstructuredMesh::find_neighbors(), libMesh::DofMap::first_dof(), libMesh::DofMap::first_old_dof(), libMesh::Nemesis_IO_Helper::get_cmap_params(), libMesh::Nemesis_IO_Helper::get_eb_info_global(), libMesh::Nemesis_IO_Helper::get_elem_cmap(), libMesh::Nemesis_IO_Helper::get_elem_map(), libMesh::DofMap::get_info(), libMesh::Nemesis_IO_Helper::get_init_global(), libMesh::Nemesis_IO_Helper::get_init_info(), libMesh::Nemesis_IO_Helper::get_loadbal_param(), libMesh::DofMap::get_local_constraints(), libMesh::Nemesis_IO_Helper::get_node_cmap(), libMesh::Nemesis_IO_Helper::get_node_map(), libMesh::Nemesis_IO_Helper::get_ns_param_global(), libMesh::Nemesis_IO_Helper::get_ss_param_global(), libMesh::SparsityPattern::Build::handle_vi_vj(), libMesh::SystemSubsetBySubdomain::init(), libMesh::PetscDMWrapper::init_and_attach_petscdm(), HeatSystem::init_data(), libMesh::ExodusII_IO_Helper::initialize(), libMesh::ExodusII_IO_Helper::initialize_element_variables(), libMesh::ExodusII_IO_Helper::initialize_global_variables(), libMesh::ExodusII_IO_Helper::initialize_nodal_variables(), libMesh::DistributedMesh::insert_elem(), libMesh::DofMap::is_evaluable(), libMesh::SparsityPattern::Build::join(), libMesh::DofMap::last_dof(), libMesh::TransientRBEvaluation::legacy_write_offline_data_to_files(), libMesh::RBEIMEvaluation::legacy_write_offline_data_to_files(), libMesh::RBEvaluation::legacy_write_offline_data_to_files(), libMesh::RBSCMEvaluation::legacy_write_offline_data_to_files(), libMesh::RBEIMEvaluation::legacy_write_out_interpolation_points_elem(), libMesh::MeshTools::libmesh_assert_consistent_distributed(), libMesh::MeshTools::libmesh_assert_consistent_distributed_nodes(), libMesh::MeshTools::libmesh_assert_contiguous_dof_ids(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Elem >(), libMesh::MeshTools::libmesh_assert_valid_neighbors(), libMesh::DistributedMesh::libmesh_assert_valid_parallel_object_ids(), libMesh::DofMap::local_variable_indices(), main(), libMesh::MeshRefinement::make_coarsening_compatible(), AugmentSparsityOnInterface::mesh_reinit(), libMesh::MeshBase::n_active_local_elem(), libMesh::BoundaryInfo::n_boundary_conds(), libMesh::BoundaryInfo::n_edge_conds(), libMesh::DofMap::n_local_dofs(), libMesh::System::n_local_dofs(), libMesh::MeshBase::n_local_elem(), libMesh::MeshBase::n_local_nodes(), libMesh::BoundaryInfo::n_nodeset_conds(), libMesh::BoundaryInfo::n_shellface_conds(), libMesh::SparsityPattern::Build::operator()(), libMesh::DistributedMesh::own_node(), libMesh::System::point_gradient(), libMesh::System::point_hessian(), libMesh::System::point_value(), libMesh::DofMap::print_dof_constraints(), libMesh::Nemesis_IO_Helper::put_cmap_params(), libMesh::Nemesis_IO_Helper::put_elem_cmap(), libMesh::Nemesis_IO_Helper::put_elem_map(), libMesh::Nemesis_IO_Helper::put_loadbal_param(), libMesh::Nemesis_IO_Helper::put_node_cmap(), libMesh::Nemesis_IO_Helper::put_node_map(), libMesh::NameBasedIO::read(), libMesh::Nemesis_IO::read(), libMesh::XdrIO::read(), libMesh::CheckpointIO::read(), libMesh::ExodusII_IO_Helper::read_elem_num_map(), libMesh::ExodusII_IO_Helper::read_global_values(), libMesh::CheckpointIO::read_header(), libMesh::XdrIO::read_header(), libMesh::System::read_header(), libMesh::RBEvaluation::read_in_vectors_from_multiple_files(), libMesh::System::read_legacy_data(), libMesh::ExodusII_IO_Helper::read_node_num_map(), libMesh::System::read_parallel_data(), libMesh::TransientRBConstruction::read_riesz_representors_from_files(), libMesh::RBConstruction::read_riesz_representors_from_files(), libMesh::System::read_SCALAR_dofs(), libMesh::XdrIO::read_serialized_bc_names(), libMesh::XdrIO::read_serialized_bcs_helper(), libMesh::System::read_serialized_blocked_dof_objects(), libMesh::XdrIO::read_serialized_connectivity(), libMesh::System::read_serialized_data(), libMesh::XdrIO::read_serialized_nodes(), libMesh::XdrIO::read_serialized_nodesets(), libMesh::XdrIO::read_serialized_subdomain_names(), libMesh::System::read_serialized_vector(), libMesh::System::read_serialized_vectors(), libMesh::DistributedMesh::renumber_dof_objects(), libMesh::DofMap::scatter_constraints(), libMesh::CheckpointIO::select_split_config(), libMesh::DofMap::set_nonlocal_dof_objects(), libMesh::PetscDMWrapper::set_point_range_in_section(), libMesh::LaplaceMeshSmoother::smooth(), DefaultCouplingTest::testCoupling(), PointNeighborCouplingTest::testCoupling(), MeshInputTest::testDynaReadElem(), MeshInputTest::testDynaReadPatch(), MeshInputTest::testExodusCopyElementSolution(), MeshInputTest::testExodusWriteElementDataFromDiscontinuousNodalData(), SystemsTest::testProjectMatrix1D(), SystemsTest::testProjectMatrix2D(), SystemsTest::testProjectMatrix3D(), BoundaryInfoTest::testShellFaceConstraints(), CheckpointIOTest::testSplitter(), WriteVecAndScalar::testWrite(), libMesh::MeshTools::total_weight(), libMesh::MeshRefinement::uniformly_coarsen(), libMesh::Parallel::Packing< Node * >::unpack(), libMesh::Parallel::Packing< Elem * >::unpack(), libMesh::DistributedMesh::update_parallel_id_counts(), libMesh::DTKAdapter::update_variable_values(), libMesh::NameBasedIO::write(), libMesh::XdrIO::write(), libMesh::CheckpointIO::write(), libMesh::EquationSystems::write(), libMesh::GMVIO::write_discontinuous_gmv(), libMesh::ExodusII_IO::write_element_data(), libMesh::ExodusII_IO_Helper::write_element_values(), libMesh::ExodusII_IO_Helper::write_element_values_element_major(), libMesh::ExodusII_IO_Helper::write_elements(), libMesh::ExodusII_IO::write_global_data(), libMesh::ExodusII_IO_Helper::write_global_values(), libMesh::System::write_header(), libMesh::ExodusII_IO::write_information_records(), libMesh::ExodusII_IO_Helper::write_information_records(), libMesh::ExodusII_IO_Helper::write_nodal_coordinates(), libMesh::VTKIO::write_nodal_data(), libMesh::UCDIO::write_nodal_data(), libMesh::ExodusII_IO::write_nodal_data(), libMesh::ExodusII_IO::write_nodal_data_discontinuous(), libMesh::ExodusII_IO_Helper::write_nodal_values(), libMesh::Nemesis_IO_Helper::write_nodesets(), libMesh::ExodusII_IO_Helper::write_nodesets(), libMesh::RBEvaluation::write_out_vectors(), write_output_solvedata(), libMesh::System::write_parallel_data(), libMesh::RBConstruction::write_riesz_representors_to_files(), libMesh::System::write_SCALAR_dofs(), libMesh::XdrIO::write_serialized_bc_names(), libMesh::XdrIO::write_serialized_bcs_helper(), libMesh::System::write_serialized_blocked_dof_objects(), libMesh::XdrIO::write_serialized_connectivity(), libMesh::System::write_serialized_data(), libMesh::XdrIO::write_serialized_nodes(), libMesh::XdrIO::write_serialized_nodesets(), libMesh::XdrIO::write_serialized_subdomain_names(), libMesh::System::write_serialized_vector(), libMesh::System::write_serialized_vectors(), libMesh::ExodusII_IO_Helper::write_sideset_data(), libMesh::Nemesis_IO_Helper::write_sidesets(), libMesh::ExodusII_IO_Helper::write_sidesets(), libMesh::ExodusII_IO::write_timestep(), libMesh::ExodusII_IO_Helper::write_timestep(), and libMesh::ExodusII_IO::write_timestep_discontinuous().

restrict_solve_to()

template<typename T >

void libMesh::LinearSolver< T >::restrict_solve_to ( const std::vector< unsigned int > *const  dofs, const SubsetSolveMode  subset_solve_mode = SUBSET_ZERO  )

virtualinherited

After calling this method, all successive solves will be restricted to the given set of dofs, which must contain local dofs on each processor only and not contain any duplicates.

This mode can be disabled by calling this method with dofs being a nullptr.

Reimplemented in libMesh::PetscLinearSolver< T >, and libMesh::PetscLinearSolver< Number >.

Definition at line 136 of file linear_solver.C.

{
  if (dofs != nullptr)
    libmesh_not_implemented();
}

reuse_preconditioner()

template<typename T >

void libMesh::LinearSolver< T >::reuse_preconditioner ( bool  reuse_flag )

virtualinherited

Set the same_preconditioner flag, which indicates if we reuse the same preconditioner for subsequent solves.

Definition at line 129 of file linear_solver.C.

{
  same_preconditioner = reuse_flag;
}

Referenced by libMesh::ImplicitSystem::disable_cache(), libMesh::RBConstruction::initialize_rb_construction(), and main().

set_eigen_preconditioner_type()

template<typename T >

void libMesh::EigenSparseLinearSolver< T >::set_eigen_preconditioner_type ( )

private

Tells Eigen to use the user-specified preconditioner stored in _preconditioner_type.

Definition at line 287 of file eigen_sparse_linear_solver.C.

{
  libmesh_not_implemented();
 
  // switch (this->_preconditioner_type)
  //   {
  //   case IDENTITY_PRECOND:
  //     _precond_type = nullptr; return;
 
  //   case ILU_PRECOND:
  //     _precond_type = ILUPrecond; return;
 
  //   case JACOBI_PRECOND:
  //     _precond_type = JacobiPrecond; return;
 
  //   case SSOR_PRECOND:
  //     _precond_type = SSORPrecond; return;
 
 
  //   default:
  //     libMesh::err << "ERROR:  Unsupported LASPACK Preconditioner: "
  //     << this->_preconditioner_type << std::endl
  //     << "Continuing with ILU"      << std::endl;
  //     this->_preconditioner_type = ILU_PRECOND;
  //     this->set_laspack_preconditioner_type();
  //   }
}

set_preconditioner_type()

template<typename T >

void libMesh::LinearSolver< T >::set_preconditioner_type ( const PreconditionerType  pct )

inherited

Sets the type of preconditioner to use.

Definition at line 108 of file linear_solver.C.

{
  if (_preconditioner)
    _preconditioner->set_type(pct);
  else
    _preconditioner_type = pct;
}

Referenced by TimeSolverTestImplementation< NewmarkSolver >::run_test_with_exact_soln(), and SystemsTest::testDofCouplingWithVarGroups().

set_solver_configuration()

template<typename T >

void libMesh::LinearSolver< T >::set_solver_configuration ( SolverConfiguration &  solver_configuration )

inherited

Set the solver configuration object.

Definition at line 177 of file linear_solver.C.

{
  _solver_configuration = &solver_configuration;
}

set_solver_type()

template<typename T>

void libMesh::LinearSolver< T >::set_solver_type ( const SolverType  st )

inlineinherited

Sets the type of solver to use.

Definition at line 126 of file linear_solver.h.

  { _solver_type = st; }

Referenced by main(), TimeSolverTestImplementation< NewmarkSolver >::run_test_with_exact_soln(), and SystemsTest::testDofCouplingWithVarGroups().

solve() [1/6]

template<typename T>

std::pair< unsigned int, Real > libMesh::LinearSolver< T >::solve ( const ShellMatrix< T > &  matrix, const SparseMatrix< T > *  precond_matrix, NumericVector< T > &  sol, NumericVector< T > &  rhs, const double  tol, const unsigned int  n_iter  )

inlineinherited

This function solves a system whose matrix is a shell matrix, but an optional sparse matrix may be used as preconditioning matrix.

Definition at line 346 of file linear_solver.h.

{
  if (pc_mat)
    return this->solve(mat, *pc_mat, sol, rhs, tol, n_iter);
  else
    return this->solve(mat, sol, rhs, tol, n_iter);
}

solve() [2/6]

template<typename T >

std::pair< unsigned int, Real > libMesh::EigenSparseLinearSolver< T >::solve ( const ShellMatrix< T > &  shell_matrix, const SparseMatrix< T > &  precond_matrix, NumericVector< T > &  solution_in, NumericVector< T > &  rhs_in, const double  tol, const unsigned int  m_its  )

overridevirtual

This function solves a system whose matrix is a shell matrix, but a sparse matrix is used as preconditioning matrix, this allowing other preconditioners than JACOBI.

Implements libMesh::LinearSolver< T >.

Definition at line 273 of file eigen_sparse_linear_solver.C.

{
  libmesh_not_implemented();
  return std::make_pair(0,0.0);
}

solve() [3/6]

template<typename T >

std::pair< unsigned int, Real > libMesh::EigenSparseLinearSolver< T >::solve ( const ShellMatrix< T > &  shell_matrix, NumericVector< T > &  solution_in, NumericVector< T > &  rhs_in, const double  tol, const unsigned int  m_its  )

overridevirtual

This function solves a system whose matrix is a shell matrix.

Implements libMesh::LinearSolver< T >.

Definition at line 259 of file eigen_sparse_linear_solver.C.

{
  libmesh_not_implemented();
  return std::make_pair(0,0.0);
}

solve() [4/6]

template<typename T >

std::pair< unsigned int, Real > libMesh::EigenSparseLinearSolver< T >::solve ( SparseMatrix< T > &  matrix, NumericVector< T > &  solution, NumericVector< T > &  rhs, const double  tol, const unsigned int  m_its  )

overridevirtual

Call the Eigen solver.

Implements libMesh::LinearSolver< T >.

Definition at line 83 of file eigen_sparse_linear_solver.C.

{
  LOG_SCOPE("solve()", "EigenSparseLinearSolver");
  this->init ();
 
  // Make sure the data passed in are really Eigen types
  EigenSparseMatrix<T> & matrix   = cast_ref<EigenSparseMatrix<T> &>(matrix_in);
  EigenSparseVector<T> & solution = cast_ref<EigenSparseVector<T> &>(solution_in);
  EigenSparseVector<T> & rhs      = cast_ref<EigenSparseVector<T> &>(rhs_in);
 
  // Close the matrix and vectors in case this wasn't already done.
  matrix.close();
  solution.close();
  rhs.close();
 
  std::pair<unsigned int, Real> retval(0,0.);
 
  // Solve the linear system
  switch (this->_solver_type)
    {
      // Conjugate-Gradient
    case CG:
      {
        Eigen::ConjugateGradient<EigenSM> solver (matrix._mat);
        solver.setMaxIterations(m_its);
        solver.setTolerance(tol);
        solution._vec = solver.solveWithGuess(rhs._vec,solution._vec);
        libMesh::out << "#iterations: " << solver.iterations() << std::endl;
        libMesh::out << "estimated error: " << solver.error() << std::endl;
        retval = std::make_pair(solver.iterations(), solver.error());
        _comp_info = solver.info();
        break;
      }
 
      // Bi-Conjugate Gradient Stabilized
    case BICGSTAB:
      {
        Eigen::BiCGSTAB<EigenSM> solver (matrix._mat);
        solver.setMaxIterations(m_its);
        solver.setTolerance(tol);
        solution._vec = solver.solveWithGuess(rhs._vec,solution._vec);
        libMesh::out << "#iterations: " << solver.iterations() << std::endl;
        libMesh::out << "estimated error: " << solver.error() << std::endl;
        retval = std::make_pair(solver.iterations(), solver.error());
        _comp_info = solver.info();
        break;
      }
 
      // Generalized Minimum Residual
    case GMRES:
      {
        Eigen::GMRES<EigenSM> solver (matrix._mat);
        solver.setMaxIterations(m_its);
        solver.setTolerance(tol);
 
        // If there is an int parameter called "gmres_restart" in the
        // SolverConfiguration object, pass it to the Eigen GMRES
        // solver.
        if (this->_solver_configuration)
          {
            auto it = this->_solver_configuration->int_valued_data.find("gmres_restart");
 
            if (it != this->_solver_configuration->int_valued_data.end())
              solver.set_restart(it->second);
          }
 
        libMesh::out << "Eigen GMRES solver, restart = " << solver.get_restart() << std::endl;
        solution._vec = solver.solveWithGuess(rhs._vec, solution._vec);
        libMesh::out << "#iterations: " << solver.iterations() << std::endl;
        libMesh::out << "estimated error: " << solver.error() << std::endl;
        retval = std::make_pair(solver.iterations(), solver.error());
        _comp_info = solver.info();
        break;
      }
 
    case SPARSELU:
      {
        // SparseLU solver code adapted from:
        // http://eigen.tuxfamily.org/dox-devel/classEigen_1_1SparseLU.html
        //
        // From Eigen docs:
        // The input matrix A should be in a compressed and
        // column-major form. Otherwise an expensive copy will be
        // made. You can call the inexpensive makeCompressed() to get
        // a compressed matrix.
        //
        // Note: we don't have a column-major storage format here, so
        // I think a copy must be made in order to use SparseLU.  It
        // appears that we also have to call makeCompressed(),
        // otherwise you get a segfault.
        matrix._mat.makeCompressed();
 
        // Build the SparseLU solver object.  Note, there is one other
        // sparse direct solver available in Eigen:
        //
        // Eigen::SparseQR<EigenSM, Eigen::AMDOrdering<int>> solver;
        //
        // I've tested it, and it works, but it is much slower than
        // SparseLU.  The main benefit of SparseQR is that it can
        // handle non-square matrices, but we don't allow non-square
        // sparse matrices to be built in libmesh...
        Eigen::SparseLU<EigenSM> solver;
 
        // Compute the ordering permutation vector from the structural pattern of the matrix.
        solver.analyzePattern(matrix._mat);
 
        // Compute the numerical factorization
        solver.factorize(matrix._mat);
 
        // Use the factors to solve the linear system
        solution._vec = solver.solve(rhs._vec);
 
        // Set up the return value.  The SparseLU solver doesn't
        // support asking for the number of iterations or the final
        // error, so we'll just report back 1 and 0, respectively.
        retval = std::make_pair(/*n. iterations=*/1, /*error=*/0);
 
        // Store the success/failure reason and break out.
        _comp_info = solver.info();
        break;
      }
 
      // Unknown solver, use BICGSTAB
    default:
      {
        libMesh::err << "ERROR:  Unsupported Eigen Solver: "
                     << Utility::enum_to_string(this->_solver_type) << std::endl
                     << "Continuing with BICGSTAB" << std::endl;
 
        this->_solver_type = BICGSTAB;
 
        return this->solve (matrix,
                            solution,
                            rhs,
                            tol,
                            m_its);
      }
    }
 
  return retval;
}

References libMesh::EigenSparseMatrix< T >::_mat, libMesh::BICGSTAB, libMesh::CG, libMesh::EigenSparseMatrix< T >::close(), libMesh::Utility::enum_to_string(), libMesh::err, libMesh::GMRES, libMesh::TriangleWrapper::init(), libMesh::out, and libMesh::SPARSELU.

solve() [5/6]

template<typename T >

std::pair< unsigned int, Real > libMesh::EigenSparseLinearSolver< T >::solve ( SparseMatrix< T > &  matrix, SparseMatrix< T > &  pc, NumericVector< T > &  solution, NumericVector< T > &  rhs, const double  tol, const unsigned int  m_its  )

inlineoverridevirtual

Call the Eigen solver.

Implements libMesh::LinearSolver< T >.

Definition at line 186 of file eigen_sparse_linear_solver.h.

{
  libmesh_error_msg("ERROR: Eigen does not support a user-supplied preconditioner!");
 
  std::pair<unsigned int, Real> p;
  return p;
}

solve() [6/6]

template<typename T>

std::pair< unsigned int, Real > libMesh::LinearSolver< T >::solve ( SparseMatrix< T > &  matrix, SparseMatrix< T > *  precond_matrix, NumericVector< T > &  sol, NumericVector< T > &  rhs, const double  tol, const unsigned int  n_iter  )

inlineinherited

This function calls the solver "_solver_type" preconditioned with the "_preconditioner_type" preconditioner.

The preconditioning matrix is used if it is provided, or the system matrix is used if precond_matrix is null

Definition at line 329 of file linear_solver.h.

{
  if (pc_mat)
    return this->solve(mat, *pc_mat, sol, rhs, tol, n_iter);
  else
    return this->solve(mat, sol, rhs, tol, n_iter);
}

solver_type()

template<typename T>

SolverType libMesh::LinearSolver< T >::solver_type ( ) const

inlineinherited

Returns

The type of solver to use.

Definition at line 121 of file linear_solver.h.

{ return _solver_type; }

Member Data Documentation

_communicator

const Parallel::Communicator& libMesh::ParallelObject::_communicator

protectedinherited

Definition at line 112 of file parallel_object.h.

Referenced by libMesh::EquationSystems::build_parallel_elemental_solution_vector(), libMesh::EquationSystems::build_parallel_solution_vector(), libMesh::ParallelObject::comm(), libMesh::ParallelObject::n_processors(), libMesh::ParallelObject::operator=(), and libMesh::ParallelObject::processor_id().

_comp_info

template<typename T>

Eigen::ComputationInfo libMesh::EigenSparseLinearSolver< T >::_comp_info

private

Store the result of the last solve.

Definition at line 141 of file eigen_sparse_linear_solver.h.

_convergence_reasons

template<typename T>

std::map< Eigen::ComputationInfo, LinearConvergenceReason > libMesh::EigenSparseLinearSolver< T >::_convergence_reasons = EigenSparseLinearSolver<T>::build_map()

staticprivate

Static map between Eigen ComputationInfo enumerations and libMesh LinearConvergenceReason enumerations.

Definition at line 147 of file eigen_sparse_linear_solver.h.

_counts

ReferenceCounter::Counts libMesh::ReferenceCounter::_counts

staticprotectedinherited

Actually holds the data.

Definition at line 122 of file reference_counter.h.

Referenced by libMesh::ReferenceCounter::get_info(), libMesh::ReferenceCounter::increment_constructor_count(), and libMesh::ReferenceCounter::increment_destructor_count().

_enable_print_counter

bool libMesh::ReferenceCounter::_enable_print_counter = true

staticprotectedinherited

Flag to control whether reference count information is printed when print_info is called.

Definition at line 141 of file reference_counter.h.

Referenced by libMesh::ReferenceCounter::disable_print_counter_info(), libMesh::ReferenceCounter::enable_print_counter_info(), and libMesh::ReferenceCounter::print_info().

_is_initialized

template<typename T>

bool libMesh::LinearSolver< T >::_is_initialized

protectedinherited

Flag indicating if the data structures have been initialized.

Definition at line 286 of file linear_solver.h.

Referenced by libMesh::LinearSolver< Number >::initialized().

_mutex

Threads::spin_mutex libMesh::ReferenceCounter::_mutex

staticprotectedinherited

Mutual exclusion object to enable thread-safe reference counting.

Definition at line 135 of file reference_counter.h.

_n_objects

Threads::atomic< unsigned int > libMesh::ReferenceCounter::_n_objects

staticprotectedinherited

The number of objects.

Print the reference count information when the number returns to 0.

Definition at line 130 of file reference_counter.h.

Referenced by libMesh::ReferenceCounter::n_objects(), libMesh::ReferenceCounter::ReferenceCounter(), and libMesh::ReferenceCounter::~ReferenceCounter().

_preconditioner

template<typename T>

Preconditioner<T>* libMesh::LinearSolver< T >::_preconditioner

protectedinherited

Holds the Preconditioner object to be used for the linear solves.

Definition at line 291 of file linear_solver.h.

_preconditioner_type

template<typename T>

PreconditionerType libMesh::LinearSolver< T >::_preconditioner_type

protectedinherited

Enum stating with type of preconditioner to use.

Definition at line 281 of file linear_solver.h.

Referenced by libMesh::AztecLinearSolver< T >::AztecLinearSolver().

_solver_configuration

template<typename T>

SolverConfiguration* libMesh::LinearSolver< T >::_solver_configuration

protectedinherited

Optionally store a SolverOptions object that can be used to set parameters like solver type, tolerances and iteration limits.

Definition at line 305 of file linear_solver.h.

_solver_type

template<typename T>

SolverType libMesh::LinearSolver< T >::_solver_type

protectedinherited

Enum stating which type of iterative solver to use.

Definition at line 276 of file linear_solver.h.

Referenced by libMesh::EigenSparseLinearSolver< T >::EigenSparseLinearSolver(), libMesh::LinearSolver< Number >::set_solver_type(), and libMesh::LinearSolver< Number >::solver_type().

same_preconditioner

template<typename T>

bool libMesh::LinearSolver< T >::same_preconditioner

protectedinherited

Boolean flag to indicate whether we want to use an identical preconditioner to the previous solve.

This can save substantial work in the cases where the system matrix is the same for successive solves.

Definition at line 299 of file linear_solver.h.

---

The documentation for this class was generated from the following files:

• include/numerics/eigen_sparse_matrix.h
• include/solvers/eigen_sparse_linear_solver.h
• src/solvers/eigen_sparse_linear_solver.C