libMesh::AztecLinearSolver< T > Class Template Reference

This class provides an interface to AztecOO iterative solvers that is compatible with the libMesh LinearSolver<> More...

#include <trilinos_aztec_linear_solver.h>

Inheritance diagram for libMesh::AztecLinearSolver< T >:

Public Member Functions
	AztecLinearSolver (const libMesh::Parallel::Communicator &comm)
	Constructor. More...
	~AztecLinearSolver ()
	Destructor. More...
virtual void	clear () override
	Release all memory and clear data structures. More...
virtual void	init (const char *name=nullptr) override
	Initialize data structures if not done so already. More...
virtual std::pair< unsigned int, Real >	solve (SparseMatrix< T > &matrix_in, NumericVector< T > &solution_in, NumericVector< T > &rhs_in, const double tol, const unsigned int m_its) override
	Call the Aztec solver. More...
virtual std::pair< unsigned int, Real >	solve (SparseMatrix< T > &matrix, SparseMatrix< T > &preconditioner, NumericVector< T > &solution, NumericVector< T > &rhs, const double tol, const unsigned int m_its) override
	This method allows you to call a linear solver while specifying the matrix to use as the (left) preconditioning matrix. More...
virtual std::pair< unsigned int, Real >	solve (const ShellMatrix< T > &shell_matrix, NumericVector< T > &solution_in, NumericVector< T > &rhs_in, const double tol, const unsigned int m_its) override
	This function solves a system whose matrix is a shell matrix. More...
virtual std::pair< unsigned int, Real >	solve (const ShellMatrix< T > &shell_matrix, const SparseMatrix< T > &precond_matrix, NumericVector< T > &solution_in, NumericVector< T > &rhs_in, const double tol, const unsigned int m_its) override
	This function solves a system whose matrix is a shell matrix, but a sparse matrix is used as preconditioning matrix, this allowing other preconditioners than JACOBI. More...
void	get_residual_history (std::vector< double > &hist)
	Fills the input vector with the sequence of residual norms from the latest iterative solve. More...
Real	get_initial_residual ()
virtual void	print_converged_reason () const override
	Prints a useful message about why the latest linear solve con(di)verged. More...
virtual LinearConvergenceReason	get_converged_reason () const override
bool	initialized () const
virtual void	init_names (const System &)
	Apply names to the system to be solved. More...
SolverType	solver_type () const
void	set_solver_type (const SolverType st)
	Sets the type of solver to use. More...
PreconditionerType	preconditioner_type () const
void	set_preconditioner_type (const PreconditionerType pct)
	Sets the type of preconditioner to use. More...
void	attach_preconditioner (Preconditioner< T > *preconditioner)
	Attaches a Preconditioner object to be used. More...
virtual void	reuse_preconditioner (bool)
	Set the same_preconditioner flag, which indicates if we reuse the same preconditioner for subsequent solves. More...
bool	get_same_preconditioner ()
virtual void	restrict_solve_to (const std::vector< unsigned int > *const dofs, const SubsetSolveMode subset_solve_mode=SUBSET_ZERO)
	After calling this method, all successive solves will be restricted to the given set of dofs, which must contain local dofs on each processor only and not contain any duplicates. More...
std::pair< unsigned int, Real >	solve (SparseMatrix< T > &matrix, SparseMatrix< T > *precond_matrix, NumericVector< T > &, NumericVector< T > &, const double, const unsigned int)
	This function calls the solver "_solver_type" preconditioned with the "_preconditioner_type" preconditioner. More...
std::pair< unsigned int, Real >	solve (const ShellMatrix< T > &matrix, const SparseMatrix< T > *precond_matrix, NumericVector< T > &, NumericVector< T > &, const double, const unsigned int)
	This function solves a system whose matrix is a shell matrix, but an optional sparse matrix may be used as preconditioning matrix. More...
virtual std::pair< unsigned int, Real >	adjoint_solve (SparseMatrix< T > &, NumericVector< T > &, NumericVector< T > &, const double, const unsigned int)
	Function to solve the adjoint system. More...
void	set_solver_configuration (SolverConfiguration &solver_configuration)
	Set the solver configuration object. More...
const Parallel::Communicator &	comm () const
processor_id_type	n_processors () const
processor_id_type	processor_id () const

Static Public Member Functions
static std::unique_ptr< LinearSolver< T > >	build (const libMesh::Parallel::Communicator &comm_in, const SolverPackage solver_package=libMesh::default_solver_package())
	Builds a LinearSolver using the linear solver package specified by solver_package. More...
static std::string	get_info ()
	Gets a string containing the reference information. More...
static void	print_info (std::ostream &out=libMesh::out)
	Prints the reference information, by default to libMesh::out. More...
static unsigned int	n_objects ()
	Prints the number of outstanding (created, but not yet destroyed) objects. More...
static void	enable_print_counter_info ()
	Methods to enable/disable the reference counter output from print_info() More...
static void	disable_print_counter_info ()

Protected Types
typedef std::map< std::string, std::pair< unsigned int, unsigned int > >	Counts
	Data structure to log the information. More...

Protected Member Functions
void	increment_constructor_count (const std::string &name)
	Increments the construction counter. More...
void	increment_destructor_count (const std::string &name)
	Increments the destruction counter. More...

Protected Attributes
SolverType	_solver_type
	Enum stating which type of iterative solver to use. More...
PreconditionerType	_preconditioner_type
	Enum stating with type of preconditioner to use. More...
bool	_is_initialized
	Flag indicating if the data structures have been initialized. More...
Preconditioner< T > *	_preconditioner
	Holds the Preconditioner object to be used for the linear solves. More...
bool	same_preconditioner
	Boolean flag to indicate whether we want to use an identical preconditioner to the previous solve. More...
SolverConfiguration *	_solver_configuration
	Optionally store a SolverOptions object that can be used to set parameters like solver type, tolerances and iteration limits. More...
const Parallel::Communicator &	_communicator

Static Protected Attributes
static Counts	_counts
	Actually holds the data. More...
static Threads::atomic< unsigned int >	_n_objects
	The number of objects. More...
static Threads::spin_mutex	_mutex
	Mutual exclusion object to enable thread-safe reference counting. More...
static bool	_enable_print_counter = true
	Flag to control whether reference count information is printed when print_info is called. More...

Private Member Functions
void	set_solver_type ()
	Tells AztecOO to use the user-specified solver stored in _solver_type. More...

Private Attributes
Epetra_LinearProblem *	_linear_problem
	The Epetra linear problem object. More...
AztecOO *	_linear_solver
	The AztecOO solver object. More...

Detailed Description

template<typename T>
class libMesh::AztecLinearSolver< T >

This class provides an interface to AztecOO iterative solvers that is compatible with the libMesh LinearSolver<>

Author

Benjamin Kirk

Date

2002-2008

Definition at line 53 of file trilinos_aztec_linear_solver.h.

Member Typedef Documentation

Counts

typedef std::map<std::string, std::pair<unsigned int, unsigned int> > libMesh::ReferenceCounter::Counts

protectedinherited

Data structure to log the information.

The log is identified by the class name.

Definition at line 117 of file reference_counter.h.

Constructor & Destructor Documentation

AztecLinearSolver()

template<typename T >

libMesh::AztecLinearSolver< T >::AztecLinearSolver

(

const libMesh::Parallel::Communicator &

comm

)

Constructor.

Initializes Aztec data structures

Definition at line 41 of file trilinos_aztec_linear_solver.C.

                                                                                 :
  LinearSolver<T>(comm)
{
  if (this->n_processors() == 1)
    this->_preconditioner_type = ILU_PRECOND;
  else
    this->_preconditioner_type = BLOCK_JACOBI_PRECOND;
}

References libMesh::LinearSolver< T >::_preconditioner_type, libMesh::BLOCK_JACOBI_PRECOND, libMesh::ILU_PRECOND, and libMesh::ParallelObject::n_processors().

~AztecLinearSolver()

template<typename T >

libMesh::AztecLinearSolver< T >::~AztecLinearSolver ( )

inline

Destructor.

Definition at line 177 of file trilinos_aztec_linear_solver.h.

{
  this->clear ();
}

Member Function Documentation

adjoint_solve()

template<typename T>

std::pair< unsigned int, Real > libMesh::LinearSolver< T >::adjoint_solve ( SparseMatrix< T > &  mat, NumericVector< T > &  sol, NumericVector< T > &  rhs, const double  tol, const unsigned int  n_iter  )

virtualinherited

Function to solve the adjoint system.

Note

This method will compute the preconditioner from the system matrix. This is not a pure virtual function and is defined linear_solver.C

Reimplemented in libMesh::PetscLinearSolver< T >, libMesh::LaspackLinearSolver< T >, libMesh::EigenSparseLinearSolver< T >, and libMesh::PetscLinearSolver< Number >.

Definition at line 145 of file linear_solver.C.

{
  // Log how long the linear solve takes.
  LOG_SCOPE("adjoint_solve()", "LinearSolver");
 
  // Take the discrete adjoint
  mat.close();
  mat.get_transpose(mat);
 
  // Call the solve function for the relevant linear algebra library and
  // solve the transpose matrix
  const std::pair<unsigned int, Real> totalrval =  this->solve (mat, sol, rhs, tol, n_iter);
 
  // Now transpose back and restore the original matrix
  // by taking the discrete adjoint
  mat.get_transpose(mat);
 
  return totalrval;
}

Referenced by libMesh::ImplicitSystem::adjoint_solve().

attach_preconditioner()

template<typename T>

void libMesh::LinearSolver< T >::attach_preconditioner ( Preconditioner< T > *  preconditioner )

inherited

Attaches a Preconditioner object to be used.

Definition at line 118 of file linear_solver.C.

{
  if (this->_is_initialized)
    libmesh_error_msg("Preconditioner must be attached before the solver is initialized!");
 
  _preconditioner_type = SHELL_PRECOND;
  _preconditioner = preconditioner;
}

build()

template<typename T >

std::unique_ptr< LinearSolver< T > > libMesh::LinearSolver< T >::build ( const libMesh::Parallel::Communicator &  comm_in, const SolverPackage  solver_package = libMesh::default_solver_package()  )

staticinherited

Builds a LinearSolver using the linear solver package specified by solver_package.

Definition at line 57 of file linear_solver.C.

{
  // Avoid unused parameter warnings when no solver packages are enabled.
  libmesh_ignore(comm);
 
  // Build the appropriate solver
  switch (solver_package)
    {
#ifdef LIBMESH_HAVE_LASPACK
    case LASPACK_SOLVERS:
      return libmesh_make_unique<LaspackLinearSolver<T>>(comm);
#endif
 
 
#ifdef LIBMESH_HAVE_PETSC
    case PETSC_SOLVERS:
      return libmesh_make_unique<PetscLinearSolver<T>>(comm);
#endif
 
 
#ifdef LIBMESH_TRILINOS_HAVE_AZTECOO
    case TRILINOS_SOLVERS:
      return libmesh_make_unique<AztecLinearSolver<T>>(comm);
#endif
 
 
#ifdef LIBMESH_HAVE_EIGEN
    case EIGEN_SOLVERS:
      return libmesh_make_unique<EigenSparseLinearSolver<T>>(comm);
#endif
 
    default:
      libmesh_error_msg("ERROR:  Unrecognized solver package: " << solver_package);
    }
 
  return std::unique_ptr<LinearSolver<T>>();
}

Referenced by libMesh::ImplicitSystem::get_linear_solver(), and libMesh::TimeSolver::init().

clear()

template<typename T >

void libMesh::AztecLinearSolver< T >::clear ( )

overridevirtual

Release all memory and clear data structures.

Reimplemented from libMesh::LinearSolver< T >.

Definition at line 53 of file trilinos_aztec_linear_solver.C.

{
  if (this->initialized())
    {
      this->_is_initialized = false;
 
      // Mimic PETSc default solver and preconditioner
      this->_solver_type           = GMRES;
 
      if (this->n_processors() == 1)
        this->_preconditioner_type = ILU_PRECOND;
      else
        this->_preconditioner_type = BLOCK_JACOBI_PRECOND;
    }
}

References libMesh::libMeshPrivateData::_is_initialized, libMesh::BLOCK_JACOBI_PRECOND, libMesh::GMRES, libMesh::ILU_PRECOND, and libMesh::initialized().

comm()

const Parallel::Communicator& libMesh::ParallelObject::comm ( ) const

inlineinherited

Returns

A reference to the Parallel::Communicator object used by this mesh.

Definition at line 94 of file parallel_object.h.

  { return _communicator; }

References libMesh::ParallelObject::_communicator.

Referenced by libMesh::__libmesh_petsc_diff_solver_jacobian(), libMesh::__libmesh_petsc_diff_solver_monitor(), libMesh::__libmesh_petsc_diff_solver_residual(), libMesh::__libmesh_tao_equality_constraints(), libMesh::__libmesh_tao_equality_constraints_jacobian(), libMesh::__libmesh_tao_gradient(), libMesh::__libmesh_tao_hessian(), libMesh::__libmesh_tao_inequality_constraints(), libMesh::__libmesh_tao_inequality_constraints_jacobian(), libMesh::__libmesh_tao_objective(), libMesh::MeshRefinement::_coarsen_elements(), libMesh::ExactSolution::_compute_error(), libMesh::UniformRefinementEstimator::_estimate_error(), libMesh::BoundaryInfo::_find_id_maps(), libMesh::PetscLinearSolver< Number >::_petsc_shell_matrix_get_diagonal(), libMesh::SlepcEigenSolver< libMesh::Number >::_petsc_shell_matrix_get_diagonal(), libMesh::PetscLinearSolver< Number >::_petsc_shell_matrix_mult(), libMesh::SlepcEigenSolver< libMesh::Number >::_petsc_shell_matrix_mult(), libMesh::PetscLinearSolver< Number >::_petsc_shell_matrix_mult_add(), libMesh::EquationSystems::_read_impl(), libMesh::MeshRefinement::_refine_elements(), libMesh::MeshRefinement::_smooth_flags(), libMesh::DofMap::add_constraints_to_send_list(), add_cube_convex_hull_to_mesh(), libMesh::PetscDMWrapper::add_dofs_helper(), libMesh::PetscDMWrapper::add_dofs_to_section(), libMesh::TransientRBConstruction::add_IC_to_RB_space(), libMesh::ImplicitSystem::add_matrix(), libMesh::RBConstruction::add_scaled_matrix_and_vector(), libMesh::DynaIO::add_spline_constraints(), libMesh::System::add_vector(), libMesh::UnstructuredMesh::all_second_order(), libMesh::MeshTools::Modification::all_tri(), libMesh::LaplaceMeshSmoother::allgather_graph(), libMesh::DofMap::allgather_recursive_constraints(), libMesh::TransientRBConstruction::allocate_data_structures(), libMesh::RBConstruction::allocate_data_structures(), libMesh::TransientRBConstruction::assemble_affine_expansion(), libMesh::FEMSystem::assemble_qoi(), libMesh::MeshCommunication::assign_global_indices(), libMesh::DofMap::attach_matrix(), libMesh::MeshTools::Generation::build_extrusion(), libMesh::BoundaryInfo::build_node_list_from_side_list(), libMesh::EquationSystems::build_parallel_elemental_solution_vector(), libMesh::EquationSystems::build_parallel_solution_vector(), libMesh::PetscDMWrapper::build_section(), libMesh::PetscDMWrapper::build_sf(), libMesh::System::calculate_norm(), libMesh::DofMap::check_dirichlet_bcid_consistency(), libMesh::RBConstruction::compute_Fq_representor_innerprods(), libMesh::RBConstruction::compute_max_error_bound(), libMesh::Nemesis_IO_Helper::compute_num_global_elem_blocks(), libMesh::Nemesis_IO_Helper::compute_num_global_nodesets(), libMesh::Nemesis_IO_Helper::compute_num_global_sidesets(), libMesh::RBConstruction::compute_output_dual_innerprods(), libMesh::RBConstruction::compute_residual_dual_norm_slow(), libMesh::RBSCMConstruction::compute_SCM_bounds_on_training_set(), libMesh::Problem_Interface::computeF(), libMesh::Problem_Interface::computeJacobian(), libMesh::Problem_Interface::computePreconditioner(), libMesh::ExodusII_IO::copy_elemental_solution(), libMesh::ExodusII_IO::copy_scalar_solution(), libMesh::MeshTools::correct_node_proc_ids(), libMesh::MeshTools::create_bounding_box(), libMesh::DofMap::create_dof_constraints(), libMesh::MeshTools::create_nodal_bounding_box(), libMesh::MeshRefinement::create_parent_error_vector(), libMesh::MeshTools::create_processor_bounding_box(), libMesh::MeshTools::create_subdomain_bounding_box(), libMesh::MeshCommunication::delete_remote_elements(), libMesh::DofMap::distribute_dofs(), DMlibMeshFunction(), DMlibMeshJacobian(), DMlibMeshSetSystem_libMesh(), DMVariableBounds_libMesh(), libMesh::DTKSolutionTransfer::DTKSolutionTransfer(), libMesh::MeshRefinement::eliminate_unrefined_patches(), libMesh::RBEIMConstruction::enrich_RB_space(), libMesh::TransientRBConstruction::enrich_RB_space(), libMesh::RBConstruction::enrich_RB_space(), libMesh::EpetraVector< T >::EpetraVector(), AssembleOptimization::equality_constraints(), libMesh::WeightedPatchRecoveryErrorEstimator::estimate_error(), libMesh::PatchRecoveryErrorEstimator::estimate_error(), libMesh::JumpErrorEstimator::estimate_error(), libMesh::AdjointRefinementEstimator::estimate_error(), libMesh::ExactErrorEstimator::estimate_error(), libMesh::RBEIMConstruction::evaluate_mesh_function(), libMesh::MeshRefinement::flag_elements_by_elem_fraction(), libMesh::MeshRefinement::flag_elements_by_error_fraction(), libMesh::MeshRefinement::flag_elements_by_error_tolerance(), libMesh::MeshRefinement::flag_elements_by_mean_stddev(), libMesh::MeshRefinement::flag_elements_by_nelem_target(), libMesh::DofMap::gather_constraints(), libMesh::MeshfreeInterpolation::gather_remote_data(), libMesh::CondensedEigenSystem::get_eigenpair(), libMesh::DofMap::get_info(), libMesh::ImplicitSystem::get_linear_solver(), AssembleOptimization::inequality_constraints(), AssembleOptimization::inequality_constraints_jacobian(), libMesh::LocationMap< T >::init(), libMesh::TimeSolver::init(), libMesh::SystemSubsetBySubdomain::init(), libMesh::PetscDMWrapper::init_and_attach_petscdm(), libMesh::EigenSystem::init_matrices(), libMesh::OptimizationSystem::initialize_equality_constraints_storage(), libMesh::OptimizationSystem::initialize_inequality_constraints_storage(), libMesh::RBEIMConstruction::initialize_rb_construction(), integrate_function(), libMesh::MeshTools::libmesh_assert_consistent_distributed(), libMesh::MeshTools::libmesh_assert_consistent_distributed_nodes(), libMesh::MeshTools::libmesh_assert_contiguous_dof_ids(), libMesh::MeshTools::libmesh_assert_parallel_consistent_new_node_procids(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Elem >(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Node >(), libMesh::MeshTools::libmesh_assert_topology_consistent_procids< Node >(), libMesh::MeshTools::libmesh_assert_valid_boundary_ids(), libMesh::MeshTools::libmesh_assert_valid_dof_ids(), libMesh::MeshTools::libmesh_assert_valid_neighbors(), libMesh::DistributedMesh::libmesh_assert_valid_parallel_flags(), libMesh::DistributedMesh::libmesh_assert_valid_parallel_object_ids(), libMesh::DistributedMesh::libmesh_assert_valid_parallel_p_levels(), libMesh::MeshTools::libmesh_assert_valid_refinement_flags(), libMesh::MeshTools::libmesh_assert_valid_unique_ids(), libMesh::libmesh_petsc_preconditioner_apply(), libMesh::libmesh_petsc_snes_fd_residual(), libMesh::libmesh_petsc_snes_jacobian(), libMesh::libmesh_petsc_snes_mffd_residual(), libMesh::libmesh_petsc_snes_postcheck(), libMesh::libmesh_petsc_snes_residual(), libMesh::libmesh_petsc_snes_residual_helper(), libMesh::MeshRefinement::limit_level_mismatch_at_edge(), libMesh::MeshRefinement::limit_level_mismatch_at_node(), libMesh::MeshRefinement::limit_overrefined_boundary(), libMesh::MeshRefinement::limit_underrefined_boundary(), main(), libMesh::MeshRefinement::make_coarsening_compatible(), libMesh::MeshCommunication::make_elems_parallel_consistent(), libMesh::MeshRefinement::make_flags_parallel_consistent(), libMesh::MeshCommunication::make_new_node_proc_ids_parallel_consistent(), libMesh::MeshCommunication::make_new_nodes_parallel_consistent(), libMesh::MeshCommunication::make_node_ids_parallel_consistent(), libMesh::MeshCommunication::make_node_proc_ids_parallel_consistent(), libMesh::MeshCommunication::make_node_unique_ids_parallel_consistent(), libMesh::MeshCommunication::make_nodes_parallel_consistent(), libMesh::MeshCommunication::make_p_levels_parallel_consistent(), libMesh::MeshRefinement::make_refinement_compatible(), libMesh::TransientRBConstruction::mass_matrix_scaled_matvec(), libMesh::FEMSystem::mesh_position_set(), LinearElasticityWithContact::move_mesh(), libMesh::DistributedMesh::n_active_elem(), libMesh::MeshTools::n_active_levels(), libMesh::BoundaryInfo::n_boundary_conds(), libMesh::DofMap::n_constrained_dofs(), libMesh::BoundaryInfo::n_edge_conds(), libMesh::CondensedEigenSystem::n_global_non_condensed_dofs(), libMesh::MeshTools::n_levels(), libMesh::BoundaryInfo::n_nodeset_conds(), libMesh::MeshTools::n_p_levels(), libMesh::BoundaryInfo::n_shellface_conds(), libMesh::DistributedMesh::parallel_max_elem_id(), libMesh::DistributedMesh::parallel_max_node_id(), libMesh::ReplicatedMesh::parallel_max_unique_id(), libMesh::DistributedMesh::parallel_max_unique_id(), libMesh::DistributedMesh::parallel_n_elem(), libMesh::DistributedMesh::parallel_n_nodes(), libMesh::SparsityPattern::Build::parallel_sync(), libMesh::MeshTools::paranoid_n_levels(), libMesh::petsc_auto_fieldsplit(), libMesh::System::point_gradient(), libMesh::System::point_hessian(), libMesh::System::point_value(), libMesh::DofMap::print_dof_constraints(), FEMParameters::read(), libMesh::Nemesis_IO::read(), libMesh::XdrIO::read(), libMesh::CheckpointIO::read_header(), libMesh::XdrIO::read_header(), libMesh::System::read_header(), libMesh::RBEvaluation::read_in_vectors_from_multiple_files(), libMesh::System::read_legacy_data(), libMesh::TransientRBConstruction::read_riesz_representors_from_files(), libMesh::RBConstruction::read_riesz_representors_from_files(), libMesh::System::read_SCALAR_dofs(), libMesh::XdrIO::read_serialized_bc_names(), libMesh::XdrIO::read_serialized_bcs_helper(), libMesh::System::read_serialized_blocked_dof_objects(), libMesh::XdrIO::read_serialized_connectivity(), libMesh::XdrIO::read_serialized_nodes(), libMesh::XdrIO::read_serialized_nodesets(), libMesh::XdrIO::read_serialized_subdomain_names(), libMesh::System::read_serialized_vector(), libMesh::MeshRefinement::refine_and_coarsen_elements(), libMesh::DistributedMesh::renumber_dof_objects(), LinearElasticityWithContact::residual_and_jacobian(), OverlappingAlgebraicGhostingTest::run_ghosting_test(), OverlappingCouplingGhostingTest::run_sparsity_pattern_test(), libMesh::DofMap::scatter_constraints(), libMesh::CheckpointIO::select_split_config(), libMesh::TransientRBConstruction::set_error_temporal_data(), libMesh::RBEIMConstruction::set_explicit_sys_subvector(), libMesh::DofMap::set_nonlocal_dof_objects(), libMesh::PetscDMWrapper::set_point_range_in_section(), libMesh::PetscDiffSolver::setup_petsc_data(), libMesh::LaplaceMeshSmoother::smooth(), libMesh::split_mesh(), libMesh::BoundaryInfo::sync(), libMesh::MeshRefinement::test_level_one(), MeshfunctionDFEM::test_mesh_function_dfem(), MeshfunctionDFEM::test_mesh_function_dfem_grad(), MeshFunctionTest::test_p_level(), libMesh::MeshRefinement::test_unflagged(), SystemsTest::testBlockRestrictedVarNDofs(), PointLocatorTest::testLocator(), BoundaryInfoTest::testMesh(), SystemsTest::testProjectCubeWithMeshFunction(), CheckpointIOTest::testSplitter(), libMesh::MeshTools::total_weight(), libMesh::MeshFunctionSolutionTransfer::transfer(), libMesh::MeshfreeSolutionTransfer::transfer(), libMesh::TransientRBConstruction::truth_assembly(), libMesh::RBConstruction::truth_assembly(), libMesh::MeshRefinement::uniformly_coarsen(), libMesh::TransientRBConstruction::update_RB_initial_condition_all_N(), libMesh::RBEIMConstruction::update_RB_system_matrices(), libMesh::TransientRBConstruction::update_RB_system_matrices(), libMesh::RBConstruction::update_RB_system_matrices(), libMesh::TransientRBConstruction::update_residual_terms(), libMesh::RBConstruction::update_residual_terms(), libMesh::NameBasedIO::write(), libMesh::XdrIO::write(), libMesh::VTKIO::write_nodal_data(), libMesh::RBEvaluation::write_out_vectors(), libMesh::TransientRBConstruction::write_riesz_representors_to_files(), libMesh::RBConstruction::write_riesz_representors_to_files(), libMesh::System::write_SCALAR_dofs(), libMesh::XdrIO::write_serialized_bcs_helper(), libMesh::System::write_serialized_blocked_dof_objects(), libMesh::XdrIO::write_serialized_connectivity(), libMesh::XdrIO::write_serialized_nodes(), libMesh::XdrIO::write_serialized_nodesets(), libMesh::RBDataSerialization::RBEvaluationSerialization::write_to_file(), libMesh::RBDataSerialization::TransientRBEvaluationSerialization::write_to_file(), libMesh::RBDataSerialization::RBEIMEvaluationSerialization::write_to_file(), and libMesh::RBDataSerialization::RBSCMEvaluationSerialization::write_to_file().

disable_print_counter_info()

void libMesh::ReferenceCounter::disable_print_counter_info ( )

staticinherited

Definition at line 106 of file reference_counter.C.

{
  _enable_print_counter = false;
  return;
}

References libMesh::ReferenceCounter::_enable_print_counter.

Referenced by libMesh::LibMeshInit::LibMeshInit().

enable_print_counter_info()

void libMesh::ReferenceCounter::enable_print_counter_info ( )

staticinherited

Methods to enable/disable the reference counter output from print_info()

Definition at line 100 of file reference_counter.C.

{
  _enable_print_counter = true;
  return;
}

References libMesh::ReferenceCounter::_enable_print_counter.

get_converged_reason()

template<typename T >

LinearConvergenceReason libMesh::AztecLinearSolver< T >::get_converged_reason ( ) const

overridevirtual

Returns

The solver's convergence flag

Implements libMesh::LinearSolver< T >.

Definition at line 232 of file trilinos_aztec_linear_solver.C.

{
  const double *status = _linear_solver->GetAztecStatus();
 
  switch (static_cast<int>(status[AZ_why]))
    {
    case AZ_normal :
      return CONVERGED_RTOL_NORMAL;
    case AZ_maxits :
      return DIVERGED_ITS;
    default :
      break;
    }
  return DIVERGED_NULL;
}

References libMesh::CONVERGED_RTOL_NORMAL, libMesh::DIVERGED_ITS, and libMesh::DIVERGED_NULL.

get_info()

std::string libMesh::ReferenceCounter::get_info ( )

staticinherited

Gets a string containing the reference information.

Definition at line 47 of file reference_counter.C.

{
#if defined(LIBMESH_ENABLE_REFERENCE_COUNTING) && defined(DEBUG)
 
  std::ostringstream oss;
 
  oss << '\n'
      << " ---------------------------------------------------------------------------- \n"
      << "| Reference count information                                                |\n"
      << " ---------------------------------------------------------------------------- \n";
 
  for (const auto & pr : _counts)
    {
      const std::string name(pr.first);
      const unsigned int creations    = pr.second.first;
      const unsigned int destructions = pr.second.second;
 
      oss << "| " << name << " reference count information:\n"
          << "|  Creations:    " << creations    << '\n'
          << "|  Destructions: " << destructions << '\n';
    }
 
  oss << " ---------------------------------------------------------------------------- \n";
 
  return oss.str();
 
#else
 
  return "";
 
#endif
}

References libMesh::ReferenceCounter::_counts, and libMesh::Quality::name().

Referenced by libMesh::ReferenceCounter::print_info().

get_initial_residual()

template<typename T >

Real libMesh::AztecLinearSolver< T >::get_initial_residual

(

)

Returns

The initial residual for the solve just completed with this interface.

Use this method instead of the one above if you just want the starting residual and not the entire history.

Definition at line 191 of file trilinos_aztec_linear_solver.C.

{
  return _linear_solver->TrueResidual();
}

get_residual_history()

template<typename T >

void libMesh::AztecLinearSolver< T >::get_residual_history

(

std::vector< double > &

hist

)

Fills the input vector with the sequence of residual norms from the latest iterative solve.

Definition at line 182 of file trilinos_aztec_linear_solver.C.

{
  libmesh_not_implemented();
}

get_same_preconditioner()

template<typename T >

bool libMesh::LinearSolver< T >::get_same_preconditioner ( )

inlineinherited

Returns

same_preconditioner, which indicates if we reuse the same preconditioner for subsequent solves.

Definition at line 321 of file linear_solver.h.

{
  return same_preconditioner;
}

increment_constructor_count()

void libMesh::ReferenceCounter::increment_constructor_count ( const std::string &  name )

inlineprotectedinherited

Increments the construction counter.

Should be called in the constructor of any derived class that will be reference counted.

Definition at line 181 of file reference_counter.h.

{
  Threads::spin_mutex::scoped_lock lock(Threads::spin_mtx);
  std::pair<unsigned int, unsigned int> & p = _counts[name];
 
  p.first++;
}

References libMesh::ReferenceCounter::_counts, libMesh::Quality::name(), and libMesh::Threads::spin_mtx.

Referenced by libMesh::ReferenceCountedObject< RBParametrized >::ReferenceCountedObject().

increment_destructor_count()

void libMesh::ReferenceCounter::increment_destructor_count ( const std::string &  name )

inlineprotectedinherited

Increments the destruction counter.

Should be called in the destructor of any derived class that will be reference counted.

Definition at line 194 of file reference_counter.h.

{
  Threads::spin_mutex::scoped_lock lock(Threads::spin_mtx);
  std::pair<unsigned int, unsigned int> & p = _counts[name];
 
  p.second++;
}

References libMesh::ReferenceCounter::_counts, libMesh::Quality::name(), and libMesh::Threads::spin_mtx.

Referenced by libMesh::ReferenceCountedObject< RBParametrized >::~ReferenceCountedObject().

init()

template<typename T >

void libMesh::AztecLinearSolver< T >::init ( const char *  name = nullptr )

overridevirtual

Initialize data structures if not done so already.

Implements libMesh::LinearSolver< T >.

Definition at line 72 of file trilinos_aztec_linear_solver.C.

{
  // Initialize the data structures if not done so already.
  if (!this->initialized())
    {
      this->_is_initialized = true;
 
      _linear_solver = new AztecOO();
 
      set_solver_type();
 
      switch(this->_preconditioner_type)
        {
        case ILU_PRECOND:
          _linear_solver->SetAztecOption(AZ_precond,AZ_dom_decomp);
          _linear_solver->SetAztecOption(AZ_subdomain_solve,AZ_ilu);
          break;
 
        case BLOCK_JACOBI_PRECOND:
          _linear_solver->SetAztecOption(AZ_precond,AZ_Jacobi);
          break;
 
        case ICC_PRECOND:
          _linear_solver->SetAztecOption(AZ_precond,AZ_dom_decomp);
          _linear_solver->SetAztecOption(AZ_subdomain_solve,AZ_icc);
          break;
 
        case LU_PRECOND:
          _linear_solver->SetAztecOption(AZ_precond,AZ_dom_decomp);
          _linear_solver->SetAztecOption(AZ_subdomain_solve,AZ_lu);
          break;
 
        default:
          _linear_solver->SetAztecOption(AZ_precond,AZ_dom_decomp);
          _linear_solver->SetAztecOption(AZ_subdomain_solve,AZ_ilu);
        }
    }
}

References libMesh::libMeshPrivateData::_is_initialized, libMesh::BLOCK_JACOBI_PRECOND, libMesh::ICC_PRECOND, libMesh::ILU_PRECOND, libMesh::initialized(), and libMesh::LU_PRECOND.

init_names()

template<typename T>

virtual void libMesh::LinearSolver< T >::init_names ( const System &  )

inlinevirtualinherited

Apply names to the system to be solved.

For most packages this is a no-op; for PETSc this sets an option prefix from the system name and sets field names from the system's variable names.

Since field names are applied to DoF numberings, this method must be called again after any System reinit.

Reimplemented in libMesh::PetscLinearSolver< T >, and libMesh::PetscLinearSolver< Number >.

Definition at line 116 of file linear_solver.h.

{}

initialized()

template<typename T>

bool libMesh::LinearSolver< T >::initialized ( ) const

inlineinherited

Returns

true if the data structures are initialized, false otherwise.

Definition at line 95 of file linear_solver.h.

{ return _is_initialized; }

n_objects()

static unsigned int libMesh::ReferenceCounter::n_objects ( )

inlinestaticinherited

Prints the number of outstanding (created, but not yet destroyed) objects.

Definition at line 83 of file reference_counter.h.

  { return _n_objects; }

References libMesh::ReferenceCounter::_n_objects.

n_processors()

processor_id_type libMesh::ParallelObject::n_processors ( ) const

inlineinherited

Returns

The number of processors in the group.

Definition at line 100 of file parallel_object.h.

  { return cast_int<processor_id_type>(_communicator.size()); }

References libMesh::ParallelObject::_communicator.

Referenced by libMesh::BoundaryInfo::_find_id_maps(), libMesh::DofMap::add_constraints_to_send_list(), libMesh::PetscDMWrapper::add_dofs_to_section(), libMesh::DistributedMesh::add_elem(), libMesh::DofMap::add_neighbors_to_send_list(), libMesh::DistributedMesh::add_node(), libMesh::LaplaceMeshSmoother::allgather_graph(), libMesh::DofMap::allgather_recursive_constraints(), libMesh::FEMSystem::assembly(), libMesh::AztecLinearSolver< T >::AztecLinearSolver(), libMesh::BoundaryInfo::build_node_list_from_side_list(), libMesh::EquationSystems::build_parallel_elemental_solution_vector(), libMesh::DistributedMesh::clear(), libMesh::Nemesis_IO_Helper::compute_border_node_ids(), libMesh::Nemesis_IO_Helper::construct_nemesis_filename(), libMesh::ExodusII_IO::copy_scalar_solution(), libMesh::UnstructuredMesh::create_pid_mesh(), libMesh::MeshTools::create_processor_bounding_box(), libMesh::DofMap::distribute_dofs(), libMesh::DofMap::distribute_local_dofs_node_major(), libMesh::DofMap::distribute_local_dofs_var_major(), libMesh::EnsightIO::EnsightIO(), libMesh::SystemSubsetBySubdomain::init(), libMesh::PetscDMWrapper::init_and_attach_petscdm(), libMesh::Nemesis_IO_Helper::initialize(), libMesh::DistributedMesh::insert_elem(), libMesh::MeshTools::libmesh_assert_contiguous_dof_ids(), libMesh::MeshTools::libmesh_assert_parallel_consistent_new_node_procids(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Elem >(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Node >(), libMesh::MeshTools::libmesh_assert_topology_consistent_procids< Node >(), libMesh::MeshTools::libmesh_assert_valid_boundary_ids(), libMesh::MeshTools::libmesh_assert_valid_dof_ids(), libMesh::MeshTools::libmesh_assert_valid_neighbors(), libMesh::MeshTools::libmesh_assert_valid_refinement_flags(), libMesh::DofMap::local_variable_indices(), libMesh::MeshRefinement::make_coarsening_compatible(), libMesh::MeshBase::partition(), libMesh::System::point_gradient(), libMesh::System::point_hessian(), libMesh::System::point_value(), libMesh::DofMap::prepare_send_list(), libMesh::DofMap::print_dof_constraints(), libMesh::NameBasedIO::read(), libMesh::Nemesis_IO::read(), libMesh::CheckpointIO::read(), libMesh::CheckpointIO::read_connectivity(), libMesh::XdrIO::read_header(), libMesh::CheckpointIO::read_nodes(), libMesh::System::read_parallel_data(), libMesh::System::read_SCALAR_dofs(), libMesh::System::read_serialized_blocked_dof_objects(), libMesh::System::read_serialized_vector(), libMesh::DistributedMesh::renumber_dof_objects(), OverlappingFunctorTest::run_partitioner_test(), libMesh::DofMap::scatter_constraints(), libMesh::DofMap::set_nonlocal_dof_objects(), libMesh::PetscDMWrapper::set_point_range_in_section(), CheckpointIOTest::testSplitter(), WriteVecAndScalar::testWrite(), libMesh::MeshRefinement::uniformly_coarsen(), libMesh::DistributedMesh::update_parallel_id_counts(), libMesh::GMVIO::write_binary(), libMesh::GMVIO::write_discontinuous_gmv(), libMesh::VTKIO::write_nodal_data(), libMesh::System::write_parallel_data(), libMesh::System::write_SCALAR_dofs(), libMesh::XdrIO::write_serialized_bcs_helper(), libMesh::System::write_serialized_blocked_dof_objects(), libMesh::XdrIO::write_serialized_connectivity(), libMesh::XdrIO::write_serialized_nodes(), and libMesh::XdrIO::write_serialized_nodesets().

preconditioner_type()

template<typename T >

PreconditionerType libMesh::LinearSolver< T >::preconditioner_type ( ) const

inherited

Returns

The type of preconditioner to use.

Definition at line 98 of file linear_solver.C.

{
  if (_preconditioner)
    return _preconditioner->type();
 
  return _preconditioner_type;
}

print_converged_reason()

template<typename T >

void libMesh::AztecLinearSolver< T >::print_converged_reason ( ) const

overridevirtual

Prints a useful message about why the latest linear solve con(di)verged.

Reimplemented from libMesh::LinearSolver< T >.

Definition at line 199 of file trilinos_aztec_linear_solver.C.

{
  const double *status = _linear_solver->GetAztecStatus();
 
  switch (static_cast<int>(status[AZ_why]))
    {
    case AZ_normal :
      libMesh::out << "AztecOO converged.\n";
      break;
    case AZ_maxits :
      libMesh::out << "AztecOO failed to converge within maximum iterations.\n";
      break;
    case AZ_param :
      libMesh::out << "AztecOO failed to support a user-requested parameter.\n";
      break;
    case AZ_breakdown :
      libMesh::out << "AztecOO encountered numerical breakdown.\n";
      break;
    case AZ_loss :
      libMesh::out << "AztecOO encountered numerical loss of precision.\n";
      break;
    case AZ_ill_cond :
      libMesh::out << "AztecOO encountered an ill-conditioned GMRES Hessian.\n";
      break;
    default:
      libMesh::out << "AztecOO reported an unrecognized condition.\n";
      break;
    }
}

References libMesh::out.

print_info()

void libMesh::ReferenceCounter::print_info ( std::ostream &  out = libMesh::out )

staticinherited

Prints the reference information, by default to libMesh::out.

Definition at line 87 of file reference_counter.C.

{
  if (_enable_print_counter)
    out_stream << ReferenceCounter::get_info();
}

References libMesh::ReferenceCounter::_enable_print_counter, and libMesh::ReferenceCounter::get_info().

processor_id()

processor_id_type libMesh::ParallelObject::processor_id ( ) const

inlineinherited

Returns

The rank of this processor in the group.

Definition at line 106 of file parallel_object.h.

  { return cast_int<processor_id_type>(_communicator.rank()); }

References libMesh::ParallelObject::_communicator.

Referenced by libMesh::BoundaryInfo::_find_id_maps(), libMesh::EquationSystems::_read_impl(), libMesh::PetscDMWrapper::add_dofs_to_section(), libMesh::DistributedMesh::add_elem(), libMesh::BoundaryInfo::add_elements(), libMesh::DofMap::add_neighbors_to_send_list(), libMesh::DistributedMesh::add_node(), libMesh::UnstructuredMesh::all_second_order(), libMesh::MeshTools::Modification::all_tri(), libMesh::DofMap::allgather_recursive_constraints(), libMesh::FEMSystem::assembly(), libMesh::Nemesis_IO_Helper::build_element_and_node_maps(), libMesh::InfElemBuilder::build_inf_elem(), libMesh::BoundaryInfo::build_node_list_from_side_list(), libMesh::EquationSystems::build_parallel_elemental_solution_vector(), libMesh::DistributedMesh::clear(), libMesh::ExodusII_IO_Helper::close(), libMesh::Nemesis_IO_Helper::compute_border_node_ids(), libMesh::Nemesis_IO_Helper::compute_communication_map_parameters(), libMesh::Nemesis_IO_Helper::compute_internal_and_border_elems_and_internal_nodes(), libMesh::RBConstruction::compute_max_error_bound(), libMesh::Nemesis_IO_Helper::compute_node_communication_maps(), libMesh::Nemesis_IO_Helper::compute_num_global_elem_blocks(), libMesh::Nemesis_IO_Helper::compute_num_global_nodesets(), libMesh::Nemesis_IO_Helper::compute_num_global_sidesets(), libMesh::Nemesis_IO_Helper::construct_nemesis_filename(), libMesh::ExodusII_IO::copy_scalar_solution(), libMesh::MeshTools::correct_node_proc_ids(), libMesh::ExodusII_IO_Helper::create(), libMesh::DistributedMesh::delete_elem(), libMesh::DistributedMesh::delete_node(), libMesh::MeshCommunication::delete_remote_elements(), libMesh::DofMap::distribute_dofs(), libMesh::DofMap::distribute_local_dofs_node_major(), libMesh::DofMap::distribute_local_dofs_var_major(), libMesh::DistributedMesh::DistributedMesh(), libMesh::DofMap::end_dof(), libMesh::DofMap::end_old_dof(), libMesh::EnsightIO::EnsightIO(), libMesh::RBEIMConstruction::evaluate_mesh_function(), libMesh::MeshFunction::find_element(), libMesh::MeshFunction::find_elements(), libMesh::UnstructuredMesh::find_neighbors(), libMesh::DofMap::first_dof(), libMesh::DofMap::first_old_dof(), libMesh::Nemesis_IO_Helper::get_cmap_params(), libMesh::Nemesis_IO_Helper::get_eb_info_global(), libMesh::Nemesis_IO_Helper::get_elem_cmap(), libMesh::Nemesis_IO_Helper::get_elem_map(), libMesh::DofMap::get_info(), libMesh::Nemesis_IO_Helper::get_init_global(), libMesh::Nemesis_IO_Helper::get_init_info(), libMesh::Nemesis_IO_Helper::get_loadbal_param(), libMesh::DofMap::get_local_constraints(), libMesh::Nemesis_IO_Helper::get_node_cmap(), libMesh::Nemesis_IO_Helper::get_node_map(), libMesh::Nemesis_IO_Helper::get_ns_param_global(), libMesh::Nemesis_IO_Helper::get_ss_param_global(), libMesh::SparsityPattern::Build::handle_vi_vj(), libMesh::SystemSubsetBySubdomain::init(), libMesh::PetscDMWrapper::init_and_attach_petscdm(), HeatSystem::init_data(), libMesh::ExodusII_IO_Helper::initialize(), libMesh::ExodusII_IO_Helper::initialize_element_variables(), libMesh::ExodusII_IO_Helper::initialize_global_variables(), libMesh::ExodusII_IO_Helper::initialize_nodal_variables(), libMesh::DistributedMesh::insert_elem(), libMesh::DofMap::is_evaluable(), libMesh::SparsityPattern::Build::join(), libMesh::DofMap::last_dof(), libMesh::TransientRBEvaluation::legacy_write_offline_data_to_files(), libMesh::RBEIMEvaluation::legacy_write_offline_data_to_files(), libMesh::RBEvaluation::legacy_write_offline_data_to_files(), libMesh::RBSCMEvaluation::legacy_write_offline_data_to_files(), libMesh::RBEIMEvaluation::legacy_write_out_interpolation_points_elem(), libMesh::MeshTools::libmesh_assert_consistent_distributed(), libMesh::MeshTools::libmesh_assert_consistent_distributed_nodes(), libMesh::MeshTools::libmesh_assert_contiguous_dof_ids(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Elem >(), libMesh::MeshTools::libmesh_assert_valid_neighbors(), libMesh::DistributedMesh::libmesh_assert_valid_parallel_object_ids(), libMesh::DofMap::local_variable_indices(), main(), libMesh::MeshRefinement::make_coarsening_compatible(), AugmentSparsityOnInterface::mesh_reinit(), libMesh::MeshBase::n_active_local_elem(), libMesh::BoundaryInfo::n_boundary_conds(), libMesh::BoundaryInfo::n_edge_conds(), libMesh::DofMap::n_local_dofs(), libMesh::System::n_local_dofs(), libMesh::MeshBase::n_local_elem(), libMesh::MeshBase::n_local_nodes(), libMesh::BoundaryInfo::n_nodeset_conds(), libMesh::BoundaryInfo::n_shellface_conds(), libMesh::SparsityPattern::Build::operator()(), libMesh::DistributedMesh::own_node(), libMesh::System::point_gradient(), libMesh::System::point_hessian(), libMesh::System::point_value(), libMesh::DofMap::print_dof_constraints(), libMesh::Nemesis_IO_Helper::put_cmap_params(), libMesh::Nemesis_IO_Helper::put_elem_cmap(), libMesh::Nemesis_IO_Helper::put_elem_map(), libMesh::Nemesis_IO_Helper::put_loadbal_param(), libMesh::Nemesis_IO_Helper::put_node_cmap(), libMesh::Nemesis_IO_Helper::put_node_map(), libMesh::NameBasedIO::read(), libMesh::Nemesis_IO::read(), libMesh::XdrIO::read(), libMesh::CheckpointIO::read(), libMesh::ExodusII_IO_Helper::read_elem_num_map(), libMesh::ExodusII_IO_Helper::read_global_values(), libMesh::CheckpointIO::read_header(), libMesh::XdrIO::read_header(), libMesh::System::read_header(), libMesh::RBEvaluation::read_in_vectors_from_multiple_files(), libMesh::System::read_legacy_data(), libMesh::ExodusII_IO_Helper::read_node_num_map(), libMesh::System::read_parallel_data(), libMesh::TransientRBConstruction::read_riesz_representors_from_files(), libMesh::RBConstruction::read_riesz_representors_from_files(), libMesh::System::read_SCALAR_dofs(), libMesh::XdrIO::read_serialized_bc_names(), libMesh::XdrIO::read_serialized_bcs_helper(), libMesh::System::read_serialized_blocked_dof_objects(), libMesh::XdrIO::read_serialized_connectivity(), libMesh::System::read_serialized_data(), libMesh::XdrIO::read_serialized_nodes(), libMesh::XdrIO::read_serialized_nodesets(), libMesh::XdrIO::read_serialized_subdomain_names(), libMesh::System::read_serialized_vector(), libMesh::System::read_serialized_vectors(), libMesh::DistributedMesh::renumber_dof_objects(), libMesh::DofMap::scatter_constraints(), libMesh::CheckpointIO::select_split_config(), libMesh::DofMap::set_nonlocal_dof_objects(), libMesh::PetscDMWrapper::set_point_range_in_section(), libMesh::LaplaceMeshSmoother::smooth(), DefaultCouplingTest::testCoupling(), PointNeighborCouplingTest::testCoupling(), MeshInputTest::testDynaReadElem(), MeshInputTest::testDynaReadPatch(), MeshInputTest::testExodusCopyElementSolution(), MeshInputTest::testExodusWriteElementDataFromDiscontinuousNodalData(), SystemsTest::testProjectMatrix1D(), SystemsTest::testProjectMatrix2D(), SystemsTest::testProjectMatrix3D(), BoundaryInfoTest::testShellFaceConstraints(), CheckpointIOTest::testSplitter(), WriteVecAndScalar::testWrite(), libMesh::MeshTools::total_weight(), libMesh::MeshRefinement::uniformly_coarsen(), libMesh::Parallel::Packing< Node * >::unpack(), libMesh::Parallel::Packing< Elem * >::unpack(), libMesh::DistributedMesh::update_parallel_id_counts(), libMesh::DTKAdapter::update_variable_values(), libMesh::NameBasedIO::write(), libMesh::XdrIO::write(), libMesh::CheckpointIO::write(), libMesh::EquationSystems::write(), libMesh::GMVIO::write_discontinuous_gmv(), libMesh::ExodusII_IO::write_element_data(), libMesh::ExodusII_IO_Helper::write_element_values(), libMesh::ExodusII_IO_Helper::write_element_values_element_major(), libMesh::ExodusII_IO_Helper::write_elements(), libMesh::ExodusII_IO::write_global_data(), libMesh::ExodusII_IO_Helper::write_global_values(), libMesh::System::write_header(), libMesh::ExodusII_IO::write_information_records(), libMesh::ExodusII_IO_Helper::write_information_records(), libMesh::ExodusII_IO_Helper::write_nodal_coordinates(), libMesh::VTKIO::write_nodal_data(), libMesh::UCDIO::write_nodal_data(), libMesh::ExodusII_IO::write_nodal_data(), libMesh::ExodusII_IO::write_nodal_data_discontinuous(), libMesh::ExodusII_IO_Helper::write_nodal_values(), libMesh::Nemesis_IO_Helper::write_nodesets(), libMesh::ExodusII_IO_Helper::write_nodesets(), libMesh::RBEvaluation::write_out_vectors(), write_output_solvedata(), libMesh::System::write_parallel_data(), libMesh::RBConstruction::write_riesz_representors_to_files(), libMesh::System::write_SCALAR_dofs(), libMesh::XdrIO::write_serialized_bc_names(), libMesh::XdrIO::write_serialized_bcs_helper(), libMesh::System::write_serialized_blocked_dof_objects(), libMesh::XdrIO::write_serialized_connectivity(), libMesh::System::write_serialized_data(), libMesh::XdrIO::write_serialized_nodes(), libMesh::XdrIO::write_serialized_nodesets(), libMesh::XdrIO::write_serialized_subdomain_names(), libMesh::System::write_serialized_vector(), libMesh::System::write_serialized_vectors(), libMesh::ExodusII_IO_Helper::write_sideset_data(), libMesh::Nemesis_IO_Helper::write_sidesets(), libMesh::ExodusII_IO_Helper::write_sidesets(), libMesh::ExodusII_IO::write_timestep(), libMesh::ExodusII_IO_Helper::write_timestep(), and libMesh::ExodusII_IO::write_timestep_discontinuous().

restrict_solve_to()

template<typename T >

void libMesh::LinearSolver< T >::restrict_solve_to ( const std::vector< unsigned int > *const  dofs, const SubsetSolveMode  subset_solve_mode = SUBSET_ZERO  )

virtualinherited

After calling this method, all successive solves will be restricted to the given set of dofs, which must contain local dofs on each processor only and not contain any duplicates.

This mode can be disabled by calling this method with dofs being a nullptr.

Reimplemented in libMesh::PetscLinearSolver< T >, and libMesh::PetscLinearSolver< Number >.

Definition at line 136 of file linear_solver.C.

{
  if (dofs != nullptr)
    libmesh_not_implemented();
}

reuse_preconditioner()

template<typename T >

void libMesh::LinearSolver< T >::reuse_preconditioner ( bool  reuse_flag )

virtualinherited

Set the same_preconditioner flag, which indicates if we reuse the same preconditioner for subsequent solves.

Definition at line 129 of file linear_solver.C.

{
  same_preconditioner = reuse_flag;
}

Referenced by libMesh::ImplicitSystem::disable_cache(), libMesh::RBConstruction::initialize_rb_construction(), and main().

set_preconditioner_type()

template<typename T >

void libMesh::LinearSolver< T >::set_preconditioner_type ( const PreconditionerType  pct )

inherited

Sets the type of preconditioner to use.

Definition at line 108 of file linear_solver.C.

{
  if (_preconditioner)
    _preconditioner->set_type(pct);
  else
    _preconditioner_type = pct;
}

Referenced by TimeSolverTestImplementation< NewmarkSolver >::run_test_with_exact_soln(), and SystemsTest::testDofCouplingWithVarGroups().

set_solver_configuration()

template<typename T >

void libMesh::LinearSolver< T >::set_solver_configuration ( SolverConfiguration &  solver_configuration )

inherited

Set the solver configuration object.

Definition at line 177 of file linear_solver.C.

{
  _solver_configuration = &solver_configuration;
}

set_solver_type() [1/2]

template<typename T >

void libMesh::AztecLinearSolver< T >::set_solver_type ( )

private

Tells AztecOO to use the user-specified solver stored in _solver_type.

Definition at line 251 of file trilinos_aztec_linear_solver.C.

{
  switch (this->_solver_type)
    {
    case CG:
      _linear_solver->SetAztecOption(AZ_solver, AZ_cg); return;
 
    case CGS:
      _linear_solver->SetAztecOption(AZ_solver, AZ_cgs); return;
 
    case TFQMR:
      _linear_solver->SetAztecOption(AZ_solver, AZ_tfqmr); return;
 
    case BICGSTAB:
      _linear_solver->SetAztecOption(AZ_solver, AZ_bicgstab); return;
 
    case GMRES:
      _linear_solver->SetAztecOption(AZ_solver, AZ_gmres); return;
 
    default:
      libMesh::err << "ERROR:  Unsupported AztecOO Solver: "
                   << Utility::enum_to_string(this->_solver_type) << std::endl
                   << "Continuing with AztecOO defaults" << std::endl;
    }
}

References libMesh::BICGSTAB, libMesh::CG, libMesh::CGS, libMesh::Utility::enum_to_string(), libMesh::err, libMesh::GMRES, and libMesh::TFQMR.

set_solver_type() [2/2]

template<typename T>

void libMesh::LinearSolver< T >::set_solver_type ( const SolverType  st )

inlineinherited

Sets the type of solver to use.

Definition at line 126 of file linear_solver.h.

  { _solver_type = st; }

Referenced by main(), TimeSolverTestImplementation< NewmarkSolver >::run_test_with_exact_soln(), and SystemsTest::testDofCouplingWithVarGroups().

solve() [1/6]

template<typename T>

std::pair< unsigned int, Real > libMesh::LinearSolver< T >::solve ( const ShellMatrix< T > &  matrix, const SparseMatrix< T > *  precond_matrix, NumericVector< T > &  sol, NumericVector< T > &  rhs, const double  tol, const unsigned int  n_iter  )

inlineinherited

This function solves a system whose matrix is a shell matrix, but an optional sparse matrix may be used as preconditioning matrix.

Definition at line 346 of file linear_solver.h.

{
  if (pc_mat)
    return this->solve(mat, *pc_mat, sol, rhs, tol, n_iter);
  else
    return this->solve(mat, sol, rhs, tol, n_iter);
}

solve() [2/6]

template<typename T >

std::pair< unsigned int, Real > libMesh::AztecLinearSolver< T >::solve ( const ShellMatrix< T > &  shell_matrix, const SparseMatrix< T > &  precond_matrix, NumericVector< T > &  solution_in, NumericVector< T > &  rhs_in, const double  tol, const unsigned int  m_its  )

overridevirtual

This function solves a system whose matrix is a shell matrix, but a sparse matrix is used as preconditioning matrix, this allowing other preconditioners than JACOBI.

Implements libMesh::LinearSolver< T >.

Definition at line 169 of file trilinos_aztec_linear_solver.C.

{
  libmesh_not_implemented();
}

solve() [3/6]

template<typename T >

std::pair< unsigned int, Real > libMesh::AztecLinearSolver< T >::solve ( const ShellMatrix< T > &  shell_matrix, NumericVector< T > &  solution_in, NumericVector< T > &  rhs_in, const double  tol, const unsigned int  m_its  )

overridevirtual

This function solves a system whose matrix is a shell matrix.

Implements libMesh::LinearSolver< T >.

Definition at line 156 of file trilinos_aztec_linear_solver.C.

{
  libmesh_not_implemented();
}

solve() [4/6]

template<typename T >

std::pair< unsigned int, Real > libMesh::AztecLinearSolver< T >::solve ( SparseMatrix< T > &  matrix, SparseMatrix< T > &  preconditioner, NumericVector< T > &  solution, NumericVector< T > &  rhs, const double  tol, const unsigned int  m_its  )

overridevirtual

This method allows you to call a linear solver while specifying the matrix to use as the (left) preconditioning matrix.

Note

The linear solver will not compute a preconditioner in this case, and will instead premultiply by the matrix you provide.

Implements libMesh::LinearSolver< T >.

Definition at line 116 of file trilinos_aztec_linear_solver.C.

{
  LOG_SCOPE("solve()", "AztecLinearSolver");
 
  // Make sure the data passed in are really of Epetra types
  EpetraMatrix<T> * matrix   = cast_ptr<EpetraMatrix<T> *>(&matrix_in);
  EpetraMatrix<T> * precond  = cast_ptr<EpetraMatrix<T> *>(&precond_in);
  EpetraVector<T> * solution = cast_ptr<EpetraVector<T> *>(&solution_in);
  EpetraVector<T> * rhs      = cast_ptr<EpetraVector<T> *>(&rhs_in);
 
  this->init();
 
  // Close the matrices and vectors in case this wasn't already done.
  matrix->close ();
  precond->close ();
  solution->close ();
  rhs->close ();
 
  _linear_solver->SetAztecOption(AZ_max_iter,m_its);
  _linear_solver->SetAztecParam(AZ_tol,tol);
 
  Epetra_FECrsMatrix * emat = matrix->mat();
  Epetra_Vector * esol = solution->vec();
  Epetra_Vector * erhs = rhs->vec();
 
  _linear_solver->Iterate(emat, esol, erhs, m_its, tol);
 
  // return the # of its. and the final residual norm.
  return std::make_pair(_linear_solver->NumIters(), _linear_solver->TrueResidual());
}

References libMesh::EpetraMatrix< T >::close(), libMesh::TriangleWrapper::init(), and libMesh::EpetraMatrix< T >::mat().

solve() [5/6]

template<typename T>

std::pair< unsigned int, Real > libMesh::LinearSolver< T >::solve ( SparseMatrix< T > &  matrix, SparseMatrix< T > *  precond_matrix, NumericVector< T > &  sol, NumericVector< T > &  rhs, const double  tol, const unsigned int  n_iter  )

inlineinherited

This function calls the solver "_solver_type" preconditioned with the "_preconditioner_type" preconditioner.

The preconditioning matrix is used if it is provided, or the system matrix is used if precond_matrix is null

Definition at line 329 of file linear_solver.h.

{
  if (pc_mat)
    return this->solve(mat, *pc_mat, sol, rhs, tol, n_iter);
  else
    return this->solve(mat, sol, rhs, tol, n_iter);
}

solve() [6/6]

template<typename T >

virtual std::pair<unsigned int, Real> libMesh::AztecLinearSolver< T >::solve ( SparseMatrix< T > &  matrix_in, NumericVector< T > &  solution_in, NumericVector< T > &  rhs_in, const double  tol, const unsigned int  m_its  )

inlineoverridevirtual

Call the Aztec solver.

It calls the method below, using the same matrix for the system and preconditioner matrices.

Implements libMesh::LinearSolver< T >.

Definition at line 81 of file trilinos_aztec_linear_solver.h.

  {
    return this->solve(matrix_in, matrix_in, solution_in, rhs_in, tol, m_its);
  }

solver_type()

template<typename T>

SolverType libMesh::LinearSolver< T >::solver_type ( ) const

inlineinherited

Returns

The type of solver to use.

Definition at line 121 of file linear_solver.h.

{ return _solver_type; }

Member Data Documentation

_communicator

const Parallel::Communicator& libMesh::ParallelObject::_communicator

protectedinherited

Definition at line 112 of file parallel_object.h.

Referenced by libMesh::EquationSystems::build_parallel_elemental_solution_vector(), libMesh::EquationSystems::build_parallel_solution_vector(), libMesh::ParallelObject::comm(), libMesh::ParallelObject::n_processors(), libMesh::ParallelObject::operator=(), and libMesh::ParallelObject::processor_id().

_counts

ReferenceCounter::Counts libMesh::ReferenceCounter::_counts

staticprotectedinherited

Actually holds the data.

Definition at line 122 of file reference_counter.h.

Referenced by libMesh::ReferenceCounter::get_info(), libMesh::ReferenceCounter::increment_constructor_count(), and libMesh::ReferenceCounter::increment_destructor_count().

_enable_print_counter

bool libMesh::ReferenceCounter::_enable_print_counter = true

staticprotectedinherited

Flag to control whether reference count information is printed when print_info is called.

Definition at line 141 of file reference_counter.h.

Referenced by libMesh::ReferenceCounter::disable_print_counter_info(), libMesh::ReferenceCounter::enable_print_counter_info(), and libMesh::ReferenceCounter::print_info().

_is_initialized

template<typename T>

bool libMesh::LinearSolver< T >::_is_initialized

protectedinherited

Flag indicating if the data structures have been initialized.

Definition at line 286 of file linear_solver.h.

Referenced by libMesh::LinearSolver< Number >::initialized().

_linear_problem

template<typename T >

Epetra_LinearProblem* libMesh::AztecLinearSolver< T >::_linear_problem

private

The Epetra linear problem object.

Definition at line 165 of file trilinos_aztec_linear_solver.h.

_linear_solver

template<typename T >

AztecOO* libMesh::AztecLinearSolver< T >::_linear_solver

private

The AztecOO solver object.

Definition at line 170 of file trilinos_aztec_linear_solver.h.

_mutex

Threads::spin_mutex libMesh::ReferenceCounter::_mutex

staticprotectedinherited

Mutual exclusion object to enable thread-safe reference counting.

Definition at line 135 of file reference_counter.h.

_n_objects

Threads::atomic< unsigned int > libMesh::ReferenceCounter::_n_objects

staticprotectedinherited

The number of objects.

Print the reference count information when the number returns to 0.

Definition at line 130 of file reference_counter.h.

Referenced by libMesh::ReferenceCounter::n_objects(), libMesh::ReferenceCounter::ReferenceCounter(), and libMesh::ReferenceCounter::~ReferenceCounter().

_preconditioner

template<typename T>

Preconditioner<T>* libMesh::LinearSolver< T >::_preconditioner

protectedinherited

Holds the Preconditioner object to be used for the linear solves.

Definition at line 291 of file linear_solver.h.

_preconditioner_type

template<typename T>

PreconditionerType libMesh::LinearSolver< T >::_preconditioner_type

protectedinherited

Enum stating with type of preconditioner to use.

Definition at line 281 of file linear_solver.h.

Referenced by libMesh::AztecLinearSolver< T >::AztecLinearSolver().

_solver_configuration

template<typename T>

SolverConfiguration* libMesh::LinearSolver< T >::_solver_configuration

protectedinherited

Optionally store a SolverOptions object that can be used to set parameters like solver type, tolerances and iteration limits.

Definition at line 305 of file linear_solver.h.

_solver_type

template<typename T>

SolverType libMesh::LinearSolver< T >::_solver_type

protectedinherited

Enum stating which type of iterative solver to use.

Definition at line 276 of file linear_solver.h.

Referenced by libMesh::EigenSparseLinearSolver< T >::EigenSparseLinearSolver(), libMesh::LinearSolver< Number >::set_solver_type(), and libMesh::LinearSolver< Number >::solver_type().

same_preconditioner

template<typename T>

bool libMesh::LinearSolver< T >::same_preconditioner

protectedinherited

Boolean flag to indicate whether we want to use an identical preconditioner to the previous solve.

This can save substantial work in the cases where the system matrix is the same for successive solves.

Definition at line 299 of file linear_solver.h.

---

The documentation for this class was generated from the following files:

• include/solvers/trilinos_aztec_linear_solver.h
• src/solvers/trilinos_aztec_linear_solver.C