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Public Types | Public Member Functions | Static Public Member Functions | Public Attributes | Protected Member Functions | Protected Attributes | List of all members
ExtremeValue Class Reference

A class used to generate a generalized extreme value likelihood of observing model predictions. More...

#include <ExtremeValue.h>

Inheritance diagram for ExtremeValue:
[legend]

Public Types

typedef DataFileName DataFileParameterType
 

Public Member Functions

 ExtremeValue (const InputParameters &parameters)
 
virtual Real function (const std::vector< Real > &x) const override
 Return the probability density or mass function at vector x. More...
 
virtual bool enabled () const
 
std::shared_ptr< MooseObjectgetSharedPtr ()
 
std::shared_ptr< const MooseObjectgetSharedPtr () const
 
MooseAppgetMooseApp () const
 
const std::string & type () const
 
virtual const std::string & name () const
 
std::string typeAndName () const
 
std::string errorPrefix (const std::string &error_type) const
 
void callMooseError (std::string msg, const bool with_prefix) const
 
MooseObjectParameterName uniqueParameterName (const std::string &parameter_name) const
 
const InputParametersparameters () const
 
MooseObjectName uniqueName () const
 
const T & getParam (const std::string &name) const
 
std::vector< std::pair< T1, T2 > > getParam (const std::string &param1, const std::string &param2) const
 
const T * queryParam (const std::string &name) const
 
const T & getRenamedParam (const std::string &old_name, const std::string &new_name) const
 
getCheckedPointerParam (const std::string &name, const std::string &error_string="") const
 
bool isParamValid (const std::string &name) const
 
bool isParamSetByUser (const std::string &nm) const
 
void paramError (const std::string &param, Args... args) const
 
void paramWarning (const std::string &param, Args... args) const
 
void paramInfo (const std::string &param, Args... args) const
 
void connectControllableParams (const std::string &parameter, const std::string &object_type, const std::string &object_name, const std::string &object_parameter) const
 
void mooseError (Args &&... args) const
 
void mooseErrorNonPrefixed (Args &&... args) const
 
void mooseDocumentedError (const std::string &repo_name, const unsigned int issue_num, Args &&... args) const
 
void mooseWarning (Args &&... args) const
 
void mooseWarningNonPrefixed (Args &&... args) const
 
void mooseDeprecated (Args &&... args) const
 
void mooseInfo (Args &&... args) const
 
std::string getDataFileName (const std::string &param) const
 
std::string getDataFileNameByName (const std::string &relative_path) const
 
std::string getDataFilePath (const std::string &relative_path) const
 
const Parallel::Communicator & comm () const
 
processor_id_type n_processors () const
 
processor_id_type processor_id () const
 

Static Public Member Functions

static InputParameters validParams ()
 
static Real function (const std::vector< Real > &exp, const std::vector< Real > &model, const Real &noise, const bool &log_likelihood)
 Return the probability density function. More...
 

Public Attributes

const ConsoleStream _console
 

Protected Member Functions

const ReporterNamegetReporterName (const std::string &param_name) const
 
virtual void addReporterDependencyHelper (const ReporterName &)
 
const T & getReporterValue (const std::string &param_name, const std::size_t time_index=0)
 
const T & getReporterValue (const std::string &param_name, ReporterMode mode, const std::size_t time_index=0)
 
const T & getReporterValue (const std::string &param_name, const std::size_t time_index=0)
 
const T & getReporterValue (const std::string &param_name, ReporterMode mode, const std::size_t time_index=0)
 
const T & getReporterValueByName (const ReporterName &reporter_name, const std::size_t time_index=0)
 
const T & getReporterValueByName (const ReporterName &reporter_name, ReporterMode mode, const std::size_t time_index=0)
 
const T & getReporterValueByName (const ReporterName &reporter_name, const std::size_t time_index=0)
 
const T & getReporterValueByName (const ReporterName &reporter_name, ReporterMode mode, const std::size_t time_index=0)
 
bool hasReporterValue (const std::string &param_name) const
 
bool hasReporterValue (const std::string &param_name) const
 
bool hasReporterValue (const std::string &param_name) const
 
bool hasReporterValue (const std::string &param_name) const
 
bool hasReporterValueByName (const ReporterName &reporter_name) const
 
bool hasReporterValueByName (const ReporterName &reporter_name) const
 
bool hasReporterValueByName (const ReporterName &reporter_name) const
 
bool hasReporterValueByName (const ReporterName &reporter_name) const
 

Protected Attributes

const bool _log_likelihood
 return log-likelihood or likelihood More...
 
const Real_noise
 Noise value. More...
 
std::vector< Real_exp_values
 Experimental data values. More...
 
const bool & _enabled
 
MooseApp_app
 
const std::string _type
 
const std::string _name
 
const InputParameters_pars
 
Factory_factory
 
ActionFactory_action_factory
 
const Parallel::Communicator & _communicator
 

Detailed Description

A class used to generate a generalized extreme value likelihood of observing model predictions.

Definition at line 17 of file ExtremeValue.h.

Constructor & Destructor Documentation

◆ ExtremeValue()

ExtremeValue::ExtremeValue ( const InputParameters parameters)

Definition at line 23 of file ExtremeValue.C.

23 : Gaussian(parameters) {}
Gaussian(const InputParameters &parameters)
Definition: Gaussian.C:33
const InputParameters & parameters() const

Member Function Documentation

◆ function() [1/2]

Real ExtremeValue::function ( const std::vector< Real > &  x) const
overridevirtual

Return the probability density or mass function at vector x.

Parameters
xThe input vector x

Reimplemented from Gaussian.

Definition at line 44 of file ExtremeValue.C.

45 {
46  return function(_exp_values, x, _noise, _log_likelihood);
47 }
const Real & _noise
Noise value.
Definition: Gaussian.h:44
const std::vector< double > x
const bool _log_likelihood
return log-likelihood or likelihood
Definition: Gaussian.h:41
std::vector< Real > _exp_values
Experimental data values.
Definition: Gaussian.h:47

◆ function() [2/2]

Real ExtremeValue::function ( const std::vector< Real > &  exp,
const std::vector< Real > &  model,
const Real noise,
const bool &  log_likelihood 
)
static

Return the probability density function.

Parameters
expThe experimental measurement
modelThe model prediction
noiseThe scale value
log_likelihoodBool to return the log likelihood value

Definition at line 26 of file ExtremeValue.C.

30 {
31  Real result = 0.0;
32  for (unsigned i = 0; i < exp.size(); ++i)
33  {
34  Real x = (exp[i] - model[i]) / noise;
35  Real pdf = std::exp(-(x + std::exp(-x))) / noise;
36  result += std::log(pdf);
37  }
38  if (!log_likelihood)
39  result = std::exp(result);
40  return result;
41 }
auto exp(const T &)
const std::vector< double > x
const PertinentGeochemicalSystem model(database, {"H2O", "H+", "HCO3-", "O2(aq)", "Ca++", ">(s)FeOH", "radius_neg1", "radius_neg1.5"}, {"Calcite"}, {}, {"Calcite_asdf"}, {"CH4(aq)"}, {">(s)FeOCa+"}, "O2(aq)", "e-")
DIE A HORRIBLE DEATH HERE typedef LIBMESH_DEFAULT_SCALAR_TYPE Real

◆ validParams()

InputParameters ExtremeValue::validParams ( )
static

Definition at line 15 of file ExtremeValue.C.

16 {
18  params.addClassDescription("Generalized extreme value likelihood function evaluating the model "
19  "goodness against experiments.");
20  return params;
21 }
static InputParameters validParams()
Definition: Gaussian.C:17
void addClassDescription(const std::string &doc_string)

Member Data Documentation

◆ _exp_values

std::vector<Real> Gaussian::_exp_values
protectedinherited

Experimental data values.

Definition at line 47 of file Gaussian.h.

Referenced by function(), TruncatedGaussian::function(), Gaussian::function(), and Gaussian::Gaussian().

◆ _log_likelihood

const bool Gaussian::_log_likelihood
protectedinherited

return log-likelihood or likelihood

Definition at line 41 of file Gaussian.h.

Referenced by function(), TruncatedGaussian::function(), and Gaussian::function().

◆ _noise

const Real& Gaussian::_noise
protectedinherited

Noise value.

Definition at line 44 of file Gaussian.h.

Referenced by function(), TruncatedGaussian::function(), and Gaussian::function().


The documentation for this class was generated from the following files: