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Functions
assembly.C File Reference

Go to the source code of this file.

Functions

Real exact_solution (const int component, const Real x, const Real y, const Real z=0.)
 This is the exact solution that we are trying to obtain.
 
Real forcing_function (const int component, const Real x, const Real y, const Real z=0.)
 
void compute_residual (const NumericVector< Number > &X, NumericVector< Number > &R, NonlinearImplicitSystem &system)
 
void compute_jacobian (const NumericVector< Number > &, SparseMatrix< Number > &J, NonlinearImplicitSystem &system)
 

Function Documentation

◆ compute_jacobian()

void compute_jacobian ( const NumericVector< Number > &  X,
SparseMatrix< Number > &  J,
NonlinearImplicitSystem system 
)

Definition at line 315 of file assembly.C.

318{
319 // It is a good idea to make sure we are assembling
320 // the proper system.
321 libmesh_assert_equal_to(system.name(), "Poisson");
322
323 // Get the DG parameters
324 auto & es = system.get_equation_systems();
325 const auto sigma = es.parameters.get<Real>("sigma");
326 const auto epsilon = es.parameters.get<Real>("epsilon");
327
328 // Get a constant reference to the mesh object.
329 const MeshBase & mesh = system.get_mesh();
330
331 // The dimension that we are running
332 const auto dim = mesh.mesh_dimension();
333
334 // A reference to the DofMap object for this system. The DofMap
335 // object handles the index translation from node and element numbers
336 // to degree of freedom numbers. We will talk more about the DofMap
337 // in future examples.
338 const DofMap & dof_map = system.get_dof_map();
339
340 // Get a constant reference to the Finite Element type
341 // for the first (and only) variable in the system.
342 FEType fe_type = dof_map.variable_type(0);
343
344 // Build a Finite Element object of the specified type.
345 // Note that FEVectorBase is a typedef for the templated FE
346 // class.
347 std::unique_ptr<FEVectorBase> fe(FEVectorBase::build(dim, fe_type));
348
349 // An automatically determined Gauss quadrature rule for numerical integration.
350 QGauss qrule(dim, fe_type.default_quadrature_order());
351
352 // Tell the finite element object to use our quadrature rule.
353 fe->attach_quadrature_rule(&qrule);
354
355 // Declare a special finite element object for face integration.
356 std::unique_ptr<FEVectorBase> fe_face(FEVectorBase::build(dim, fe_type));
357 // And for neighbor integration
358 std::unique_ptr<FEVectorBase> fe_neighbor_face(FEVectorBase::build(dim, fe_type));
359
360 // Boundary integration requires one quadrature rule,
361 // with dimensionality one less than the dimensionality
362 // of the element.
363 QGauss qface(dim - 1, fe_type.default_quadrature_order());
364
365 // Tell the face finite element objects to use our
366 // quadrature rule.
367 fe_face->attach_quadrature_rule(&qface);
368 fe_neighbor_face->attach_quadrature_rule(&qface);
369
370 // Here we define some references to cell-specific data that
371 // will be used to assemble the linear system.
372 //
373 // The element Jacobian * quadrature weight at each integration point.
374 const auto & JxW = fe->get_JxW();
375
376 // The element shape function gradients evaluated at the quadrature points.
377 const auto & dphi = fe->get_dphi();
378
379 // face integration points
380 const auto & face_xyz = fe_face->get_xyz();
381
382 // Face shape function values
383 const auto & phi_face = fe_face->get_phi();
384
385 // Face shape function gradients
386 const auto & dphi_face = fe_face->get_dphi();
387
388 // Neighbor shape function values
389 const auto & phi_neighbor = fe_neighbor_face->get_phi();
390
391 // Neighbor face shape function gradients
392 const auto & dphi_neighbor = fe_neighbor_face->get_dphi();
393
394 // face normals
395 const auto & normals = fe_face->get_normals();
396
397 // face JxW
398 const auto & JxW_face = fe_face->get_JxW();
399
404
405 // This vector will hold the degree of freedom indices for
406 // the element. These define where in the global system
407 // the element degrees of freedom get mapped.
408 std::vector<dof_id_type> dof_indices;
409 std::vector<dof_id_type> dof_indices_neighbor;
410
411 // To avoid extraneous allocation when building element sides (to compute their volumes)
412 ElemSideBuilder side_builder;
413
414 // Now we will loop over all the elements in the mesh.
415 // We will compute the element matrix and right-hand-side
416 // contribution.
417 //
418 // Element iterators are a nice way to iterate through all the
419 // elements, or all the elements that have some property. The
420 // iterator el will iterate from the first to the last element on
421 // the local processor. The iterator end_el tells us when to stop.
422 // It is smart to make this one const so that we don't accidentally
423 // mess it up! In case users later modify this program to include
424 // refinement, we will be safe and will only consider the active
425 // elements; hence we use a variant of the active_elem_iterator.
426 for (const auto & elem : mesh.active_local_element_ptr_range())
427 {
428 // Get the degree of freedom indices for the
429 // current element. These define where in the global
430 // matrix and right-hand-side this element will
431 // contribute to.
432 dof_map.dof_indices(elem, dof_indices);
433
434 // Compute the element-specific data for the current
435 // element. This involves computing the location of the
436 // quadrature points (q_point) and the shape functions
437 // (phi, dphi) for the current element.
438 fe->reinit(elem);
439
440 libmesh_assert_msg(dphi.size() == dof_indices.size(),
441 "dphi size doesn't match dof_indices size");
442
443 // DenseMatrix::resize() member will automatically zero out the matrix.
444 Kee.resize(dof_indices.size(), dof_indices.size());
445
446 // diffusion elemental jacobian
447 for (unsigned int qp = 0; qp < qrule.n_points(); qp++)
448 for (std::size_t i = 0; i < dof_indices.size(); i++)
449 for (std::size_t j = 0; j < dof_indices.size(); j++)
450 Kee(i, j) += JxW[qp] * dphi[i][qp].contract(dphi[j][qp]);
451
452 // Now we consider jacobian contributions from the sides
453 for (auto side : elem->side_index_range())
454 {
455 // We need to compute h for penalty terms
456 const auto side_volume = side_builder(*elem, side).volume();
457 fe_face->reinit(elem, side);
458 const auto elem_b_order = static_cast<unsigned int>(fe_face->get_order());
459 const auto h_elem = elem->volume() / side_volume / std::pow(elem_b_order, 2);
460
461 // No neighbor means we must be on a boundary
462 if (!elem->neighbor_ptr(side))
463 {
464 for (unsigned int qp = 0; qp < qface.n_points(); qp++)
465 for (std::size_t i = 0; i < dof_indices.size(); i++)
466 for (std::size_t j = 0; j < dof_indices.size(); j++)
467
468 {
469 Kee(i, j) -= dphi_face[j][qp] * normals[qp] * phi_face[i][qp] * JxW_face[qp];
470 Kee(i, j) +=
471 epsilon * phi_face[j][qp] * dphi_face[i][qp] * normals[qp] * JxW_face[qp];
472 Kee(i, j) += sigma / h_elem * phi_face[j][qp] * phi_face[i][qp] * JxW_face[qp];
473 }
474 }
475 else // We must be on an interior side
476 {
477 const Elem * neighbor = elem->neighbor_ptr(side);
478
479 const auto elem_id = elem->id();
480 const auto neighbor_id = neighbor->id();
481
482 // We don't want to erroneously add multiple contributions from the same interior face
483 if ((neighbor->active() && (neighbor->level() == elem->level()) &&
484 (elem_id < neighbor_id)) ||
485 (neighbor->level() < elem->level()))
486 {
487 dof_map.dof_indices(neighbor, dof_indices_neighbor);
488
489 // Make sure we have the matching quadrature points on face and neighbor
490 std::vector<Point> neighbor_xyz;
491 FEMap::inverse_map(elem->dim(), neighbor, face_xyz,
492 neighbor_xyz);
493
494 fe_neighbor_face->reinit(neighbor, &neighbor_xyz);
495
496 libmesh_assert_msg(dphi_neighbor.size() == dof_indices_neighbor.size(),
497 "dphi_neighbor size doesn't match dof_indices_neighbor size");
498
499 Ken.resize(dof_indices.size(), dof_indices_neighbor.size());
500 Kne.resize(dof_indices_neighbor.size(), dof_indices.size());
501 Knn.resize(dof_indices_neighbor.size(), dof_indices_neighbor.size());
502
503 // Now add the DG contribution to the local jacobian
504 for (unsigned int qp = 0; qp < qface.n_points(); qp++)
505 {
506 // element-element contribution
507 for (std::size_t i = 0; i < dof_indices.size(); i++)
508 for (std::size_t j = 0; j < dof_indices.size(); j++)
509 {
510 Kee(i, j) -= 0.5 * dphi_face[j][qp] * normals[qp] * phi_face[i][qp] * JxW_face[qp];
511 Kee(i, j) +=
512 epsilon * 0.5 * phi_face[j][qp] * dphi_face[i][qp] * normals[qp] * JxW_face[qp];
513 Kee(i, j) += sigma / h_elem * phi_face[j][qp] * phi_face[i][qp] * JxW_face[qp];
514 }
515 // element-neighbor contribution
516 for (std::size_t i = 0; i < dof_indices.size(); i++)
517 for (std::size_t j = 0; j < dof_indices_neighbor.size(); j++)
518 {
519 Ken(i, j) -=
520 0.5 * dphi_neighbor[j][qp] * normals[qp] * phi_face[i][qp] * JxW_face[qp];
521 Ken(i, j) += epsilon * 0.5 * -phi_neighbor[j][qp] * dphi_face[i][qp] * normals[qp] *
522 JxW_face[qp];
523 Ken(i, j) += sigma / h_elem * -phi_neighbor[j][qp] * phi_face[i][qp] * JxW_face[qp];
524 }
525 // Neighbor-element contribution
526 for (std::size_t i = 0; i < dof_indices_neighbor.size(); i++)
527 for (std::size_t j = 0; j < dof_indices_neighbor.size(); j++)
528 {
529 Kne(i, j) +=
530 0.5 * dphi_face[j][qp] * normals[qp] * phi_neighbor[i][qp] * JxW_face[qp];
531 Kne(i, j) -= epsilon * 0.5 * phi_face[j][qp] * dphi_neighbor[i][qp] * normals[qp] *
532 JxW_face[qp];
533 Kne(i, j) -= sigma / h_elem * phi_face[j][qp] * phi_neighbor[i][qp] * JxW_face[qp];
534 }
535 // Neighbor-neighbor contribution
536 for (std::size_t i = 0; i < dof_indices_neighbor.size(); i++)
537 for (std::size_t j = 0; j < dof_indices_neighbor.size(); j++)
538 {
539 Knn(i, j) +=
540 0.5 * dphi_neighbor[j][qp] * normals[qp] * phi_neighbor[i][qp] * JxW_face[qp];
541 Knn(i, j) -= epsilon * 0.5 * -phi_neighbor[j][qp] * dphi_neighbor[i][qp] *
542 normals[qp] * JxW_face[qp];
543 Knn(i, j) -=
544 sigma / h_elem * -phi_neighbor[j][qp] * phi_neighbor[i][qp] * JxW_face[qp];
545 }
546 }
547
548 J.add_matrix(Ken, dof_indices, dof_indices_neighbor);
549 J.add_matrix(Kne, dof_indices_neighbor, dof_indices);
550 J.add_matrix(Knn, dof_indices_neighbor, dof_indices_neighbor);
551 } // whether we've done this internal side integral before
552 } // whether we're on an internal side
553 } // loop over sides
554
555 J.add_matrix(Kee, dof_indices, dof_indices);
556 } // element loop
557}
unsigned int dim
Defines a dense matrix for use in Finite Element-type computations.
void resize(const unsigned int new_m, const unsigned int new_n)
Resizes the matrix to the specified size and calls zero().
This class handles the numbering of degrees of freedom on a mesh.
Definition dof_map.h:181
void dof_indices(const Elem *const elem, std::vector< dof_id_type > &di) const
Definition dof_map.C:2201
const FEType & variable_type(const unsigned int i) const
Definition dof_map.h:2388
dof_id_type id() const
Definition dof_object.h:819
Helper for building element sides that minimizes the construction of new elements.
This is the base class from which all geometric element types are derived.
Definition elem.h:96
bool active() const
Definition elem.h:2958
unsigned int level() const
Definition elem.h:3091
const Elem * neighbor_ptr(unsigned int i) const
Definition elem.h:2615
Parameters parameters
Data structure holding arbitrary parameters.
static std::unique_ptr< FEGenericBase > build(const unsigned int dim, const FEType &type)
Builds a specific finite element type.
static Point inverse_map(const unsigned int dim, const Elem *elem, const Point &p, const Real tolerance=TOLERANCE, const bool secure=true, const bool extra_checks=true)
Definition fe_map.C:1512
class FEType hides (possibly multiple) FEFamily and approximation orders, thereby enabling specialize...
Definition fe_type.h:197
Order default_quadrature_order() const
Definition fe_type.h:415
This is the MeshBase class.
Definition mesh_base.h:81
unsigned int mesh_dimension() const
Definition mesh_base.C:430
const T & get(std::string_view) const
Definition parameters.h:451
This class implements specific orders of Gauss quadrature.
virtual void add_matrix(const DenseMatrix< T > &dm, const std::vector< numeric_index_type > &rows, const std::vector< numeric_index_type > &cols)=0
Add the full matrix dm to the SparseMatrix.
const std::string & name() const
Definition system.h:2385
const DofMap & get_dof_map() const
Definition system.h:2417
const EquationSystems & get_equation_systems() const
Definition system.h:767
const MeshBase & get_mesh() const
Definition system.h:2401
MeshBase & mesh
DIE A HORRIBLE DEATH HERE typedef LIBMESH_DEFAULT_SCALAR_TYPE Real

References libMesh::Elem::active(), libMesh::SparseMatrix< T >::add_matrix(), libMesh::FEGenericBase< OutputType >::build(), libMesh::FEType::default_quadrature_order(), dim, libMesh::DofMap::dof_indices(), libMesh::Parameters::get(), libMesh::System::get_dof_map(), libMesh::System::get_equation_systems(), libMesh::System::get_mesh(), libMesh::DofObject::id(), libMesh::FEMap::inverse_map(), libMesh::Elem::level(), mesh, libMesh::MeshBase::mesh_dimension(), libMesh::QBase::n_points(), libMesh::System::name(), libMesh::Elem::neighbor_ptr(), libMesh::EquationSystems::parameters, libMesh::Real, libMesh::DenseMatrix< T >::resize(), and libMesh::DofMap::variable_type().

Referenced by libMesh::FirstOrderUnsteadySolver::compute_second_order_eqns(), LaplaceSystem::element_time_derivative(), PoissonSystem::element_time_derivative(), HeatSystem::element_time_derivative(), SigmaPhysics::element_time_derivative(), main(), and LaplaceSystem::side_constraint().

◆ compute_residual()

void compute_residual ( const NumericVector< Number > &  X,
NumericVector< Number > &  R,
NonlinearImplicitSystem system 
)

Vectors to hold the local solution degree of freedom values

Vector to hold the local solution

Definition at line 27 of file assembly.C.

30{
31 // It is a good idea to make sure we are assembling
32 // the proper system.
33 libmesh_assert_equal_to(system.name(), "Poisson");
34
35 // Get the DG parameters
36 auto & es = system.get_equation_systems();
37 const auto sigma = es.parameters.get<Real>("sigma");
38 const auto epsilon = es.parameters.get<Real>("epsilon");
39
40 // Get a constant reference to the mesh object.
41 const MeshBase & mesh = system.get_mesh();
42
43 // The dimension that we are running
44 const auto dim = mesh.mesh_dimension();
45
46 // A reference to the DofMap object for this system. The DofMap
47 // object handles the index translation from node and element numbers
48 // to degree of freedom numbers. We will talk more about the DofMap
49 // in future examples.
50 const DofMap & dof_map = system.get_dof_map();
51
52 // Get a constant reference to the Finite Element type
53 // for the first (and only) variable in the system.
54 FEType fe_type = dof_map.variable_type(0);
55
56 // Build a Finite Element object of the specified type.
57 // Note that FEVectorBase is a typedef for the templated FE
58 // class.
59 std::unique_ptr<FEVectorBase> fe(FEVectorBase::build(dim, fe_type));
60
61 // An automatically determined Gauss quadrature rule for numerical integration.
62 QGauss qrule(dim, fe_type.default_quadrature_order());
63
64 // Tell the finite element object to use our quadrature rule.
65 fe->attach_quadrature_rule(&qrule);
66
67 // Declare a special finite element object for face integration.
68 std::unique_ptr<FEVectorBase> fe_face(FEVectorBase::build(dim, fe_type));
69 // And for neighbor integration
70 std::unique_ptr<FEVectorBase> fe_neighbor_face(FEVectorBase::build(dim, fe_type));
71
72 // Boundary integration requires one quadrature rule,
73 // with dimensionality one less than the dimensionality
74 // of the element.
75 QGauss qface(dim - 1, fe_type.default_quadrature_order());
76
77 // Tell the face finite element objects to use our
78 // quadrature rule.
79 fe_face->attach_quadrature_rule(&qface);
80 fe_neighbor_face->attach_quadrature_rule(&qface);
81
82 // Here we define some references to cell-specific data that
83 // will be used to assemble the linear system.
84 //
85 // The element Jacobian * quadrature weight at each integration point.
86 const auto & JxW = fe->get_JxW();
87
88 // element integration points
89 const auto & xyz = fe->get_xyz();
90
91 // The element shape function values evaluated at the quadrature points
92 const auto & phi = fe->get_phi();
93
94 // The element shape function gradients evaluated at the quadrature points.
95 const auto & dphi = fe->get_dphi();
96
97 // face integration points
98 const auto & face_xyz = fe_face->get_xyz();
99
100 // Face shape function values
101 const auto & phi_face = fe_face->get_phi();
102
103 // Face shape function gradients
104 const auto & dphi_face = fe_face->get_dphi();
105
106 // Neighbor shape function values
107 const auto & phi_neighbor = fe_neighbor_face->get_phi();
108
109 // Neighbor face shape function gradients
110 const auto & dphi_neighbor = fe_neighbor_face->get_dphi();
111
112 // face normals
113 const auto & normals = fe_face->get_normals();
114
115 // face JxW
116 const auto & JxW_face = fe_face->get_JxW();
117
120
121 // This vector will hold the degree of freedom indices for
122 // the element. These define where in the global system
123 // the element degrees of freedom get mapped.
124 std::vector<dof_id_type> dof_indices;
125 std::vector<dof_id_type> dof_indices_neighbor;
126
128 std::vector<Number> dof_u;
129 std::vector<Number> dof_u_neighbor;
130
132 std::vector<VectorValue<Number>> u;
133 std::vector<TensorValue<Number>> grad_u;
134 std::vector<VectorValue<Number>> u_neighbor;
135 std::vector<TensorValue<Number>> grad_u_neighbor;
136
137 // Now we will loop over all the elements in the mesh.
138 // We will compute the element matrix and right-hand-side
139 // contribution.
140 //
141 // Element iterators are a nice way to iterate through all the
142 // elements, or all the elements that have some property. The
143 // iterator el will iterate from the first to the last element on
144 // the local processor. The iterator end_el tells us when to stop.
145 // It is smart to make this one const so that we don't accidentally
146 // mess it up! In case users later modify this program to include
147 // refinement, we will be safe and will only consider the active
148 // elements; hence we use a variant of the active_elem_iterator.
149 for (const auto & elem : mesh.active_local_element_ptr_range())
150 {
151 // Get the degree of freedom indices for the
152 // current element. These define where in the global
153 // matrix and right-hand-side this element will
154 // contribute to.
155 dof_map.dof_indices(elem, dof_indices);
156
157 // Compute the element-specific data for the current
158 // element. This involves computing the location of the
159 // quadrature points (q_point) and the shape functions
160 // (phi, dphi) for the current element.
161 fe->reinit(elem);
162
163 libmesh_assert_msg(dphi.size() == dof_indices.size(),
164 "dphi size doesn't match dof_indices size");
165
166 // DenseVector::resize() member will automatically zero out the vector.
167 Fe.resize(dof_indices.size());
168
169 // Get the local solution vector
170 X.get(dof_indices, dof_u);
171
172 // build the element solution gradient
173 grad_u.resize(qrule.n_points());
174 for (unsigned int qp = 0; qp < qrule.n_points(); qp++)
175 {
176 grad_u[qp] = 0;
177 for (std::size_t i = 0; i < dof_indices.size(); i++)
178 grad_u[qp] += dof_u[i] * dphi[i][qp];
179 }
180
181 for (unsigned int qp = 0; qp < qrule.n_points(); qp++)
182 {
183 auto forcing_func = VectorValue<Number>(forcing_function(0, xyz[qp](0), xyz[qp](1)),
184 forcing_function(1, xyz[qp](0), xyz[qp](1)),
185 0);
186 for (std::size_t i = 0; i < dof_indices.size(); i++)
187 {
188 // diffusion elemental residual
189 Fe(i) += JxW[qp] * dphi[i][qp].contract(grad_u[qp]);
190
191 // forcing function
192 Fe(i) += JxW[qp] * phi[i][qp] * forcing_func;
193 }
194 }
195
196 // To avoid extraneous allocation when building element sides (to compute their volumes)
197 ElemSideBuilder side_builder;
198
199 // Now we consider residual contributions from the sides
200 for (auto side : elem->side_index_range())
201 {
202 // We need to compute h for penalty terms
203 const auto side_volume = side_builder(*elem, side).volume();
204 fe_face->reinit(elem, side);
205 const auto elem_b_order = static_cast<unsigned int>(fe_face->get_order());
206 const auto h_elem = elem->volume() / side_volume / std::pow(elem_b_order, 2);
207
208 // build the face solution value and gradient
209 u.resize(qface.n_points());
210 grad_u.resize(qface.n_points());
211 for (unsigned int qp = 0; qp < qface.n_points(); qp++)
212 {
213 u[qp] = 0;
214 grad_u[qp] = 0;
215 for (std::size_t i = 0; i < dof_indices.size(); i++)
216 {
217 u[qp] += dof_u[i] * phi_face[i][qp];
218 grad_u[qp] += dof_u[i] * dphi_face[i][qp];
219 }
220 }
221
222 // No neighbor means we must be on a boundary
223 if (!elem->neighbor_ptr(side))
224 {
225 for (unsigned int qp = 0; qp < qface.n_points(); qp++)
226 {
227 auto fn = VectorValue<Number>(exact_solution(0, face_xyz[qp](0), face_xyz[qp](1)),
228 exact_solution(1, face_xyz[qp](0), face_xyz[qp](1)),
229 0);
230 for (std::size_t i = 0; i < dof_indices.size(); i++)
231 {
232 Fe(i) -= grad_u[qp] * normals[qp] * phi_face[i][qp] * JxW_face[qp];
233 Fe(i) += epsilon * (u[qp] - fn) * dphi_face[i][qp] * normals[qp] * JxW_face[qp];
234 Fe(i) += sigma / h_elem * (u[qp] - fn) * phi_face[i][qp] * JxW_face[qp];
235 }
236 }
237 }
238 else // We must be on an interior side
239 {
240 const Elem * neighbor = elem->neighbor_ptr(side);
241
242 const auto elem_id = elem->id();
243 const auto neighbor_id = neighbor->id();
244
245 // We don't want to erroneously add multiple contributions from the same interior face
246 if ((neighbor->active() && (neighbor->level() == elem->level()) &&
247 (elem_id < neighbor_id)) ||
248 (neighbor->level() < elem->level()))
249 {
250 dof_map.dof_indices(neighbor, dof_indices_neighbor);
251
252 // Make sure we have the matching quadrature points on face and neighbor
253 std::vector<Point> neighbor_xyz;
254 FEMap::inverse_map(elem->dim(), neighbor, face_xyz,
255 neighbor_xyz);
256
257 fe_neighbor_face->reinit(neighbor, &neighbor_xyz);
258
259 libmesh_assert_msg(dphi_neighbor.size() == dof_indices_neighbor.size(),
260 "dphi_neighbor size doesn't match dof_indices_neighbor size");
261
262 Fn.resize(dof_indices_neighbor.size());
263 X.get(dof_indices_neighbor, dof_u_neighbor);
264
265 // build the neighbor solution value and gradient
266 u_neighbor.resize(qface.n_points());
267 grad_u_neighbor.resize(qface.n_points());
268 for (unsigned int qp = 0; qp < qface.n_points(); qp++)
269 {
270 u_neighbor[qp] = 0;
271 grad_u_neighbor[qp] = 0;
272 for (std::size_t i = 0; i < dof_indices_neighbor.size(); i++)
273 {
274 u_neighbor[qp] += dof_u_neighbor[i] * phi_neighbor[i][qp];
275 grad_u_neighbor[qp] += dof_u_neighbor[i] * dphi_neighbor[i][qp];
276 }
277 }
278
279 // Now add the DG contribution to the local residual
280 for (unsigned int qp = 0; qp < qface.n_points(); qp++)
281 {
282 // element contribution
283 for (std::size_t i = 0; i < dof_indices.size(); i++)
284 {
285 Fe(i) -= 0.5 * (grad_u[qp] * normals[qp] + grad_u_neighbor[qp] * normals[qp]) *
286 phi_face[i][qp] * JxW_face[qp];
287 Fe(i) += epsilon * 0.5 * (u[qp] - u_neighbor[qp]) * dphi_face[i][qp] * normals[qp] *
288 JxW_face[qp];
289 Fe(i) += sigma / h_elem * (u[qp] - u_neighbor[qp]) * phi_face[i][qp] * JxW_face[qp];
290 }
291 // Neighbor contribution
292 for (std::size_t i = 0; i < dof_indices_neighbor.size(); i++)
293 {
294 Fn(i) += 0.5 * (grad_u[qp] * normals[qp] + grad_u_neighbor[qp] * normals[qp]) *
295 phi_neighbor[i][qp] * JxW_face[qp];
296 Fn(i) -= epsilon * 0.5 * (u[qp] - u_neighbor[qp]) * dphi_neighbor[i][qp] *
297 normals[qp] * JxW_face[qp];
298 Fn(i) -=
299 sigma / h_elem * (u[qp] - u_neighbor[qp]) * phi_neighbor[i][qp] * JxW_face[qp];
300 }
301 }
302
303 R.add_vector(Fn, dof_indices_neighbor);
304 } // whether we've done this internal side integral before
305 } // whether we're on an internal side
306 } // loop over sides
307
308 R.add_vector(Fe, dof_indices);
309 } // element loop
310}
Number(* forcing_function)(const Point &p)
Number(* exact_solution)(const Point &p, const Parameters &, const std::string &, const std::string &)
Defines a dense vector for use in Finite Element-type computations.
void resize(const unsigned int n)
Resize the vector.
virtual void get(const std::vector< numeric_index_type > &index, T *values) const
Access multiple components at once.
virtual void add_vector(const T *v, const std::vector< numeric_index_type > &dof_indices)
Computes , where v is a pointer and each dof_indices[i] specifies where to add value v[i].
This class defines a vector in LIBMESH_DIM dimensional Real or Complex space.

References libMesh::Elem::active(), libMesh::NumericVector< T >::add_vector(), libMesh::FEGenericBase< OutputType >::build(), libMesh::FEType::default_quadrature_order(), dim, libMesh::DofMap::dof_indices(), exact_solution, forcing_function, libMesh::NumericVector< T >::get(), libMesh::Parameters::get(), libMesh::System::get_dof_map(), libMesh::System::get_equation_systems(), libMesh::System::get_mesh(), libMesh::DofObject::id(), libMesh::FEMap::inverse_map(), libMesh::Elem::level(), mesh, libMesh::MeshBase::mesh_dimension(), libMesh::QBase::n_points(), libMesh::System::name(), libMesh::Elem::neighbor_ptr(), libMesh::EquationSystems::parameters, libMesh::Real, libMesh::DenseVector< T >::resize(), and libMesh::DofMap::variable_type().

Referenced by main().

◆ exact_solution()

Real exact_solution ( const int  component,
const Real  x,
const Real  y,
const Real  z = 0. 
)

This is the exact solution that we are trying to obtain.

We will solve

  • (u_xx + u_yy) = f

and take a finite difference approximation using this function to get f. This is the well-known "method of manufactured solutions".

Definition at line 39 of file exact_solution.C.

43{
44 static const Real pi = acos(-1.);
45
46 switch (component)
47 {
48 case 0:
49 return cos(.5*pi*x)*sin(.5*pi*y)*cos(.5*pi*z);
50 case 1:
51 return sin(.5*pi*x)*cos(.5*pi*y)*cos(.5*pi*z);
52 case 2:
53 return sin(.5*pi*x)*cos(.5*pi*y)*cos(.5*pi*z)*cos(.5*pi*x*y*z);
54 default:
55 libmesh_error_msg("Invalid component = " << component);
56 }
57
58 // dummy
59 return 0.0;
60}
const Real pi
.
Definition libmesh.h:292

References libMesh::pi, and libMesh::Real.

◆ forcing_function()

Real forcing_function ( const int  component,
const Real  x,
const Real  y,
const Real  z = 0. 
)

Definition at line 59 of file exact_solution.C.

60{
61 static const Real pi = acos(-1.);
62
63 switch (component)
64 {
65 case 0:
66 return -3. * pi * pi * sin(pi * y / 2.) * cos(pi * x / 2.) * cos(pi * z / 2.) / 4.;
67 case 1:
68 return -3. * pi * pi * sin(pi * x / 2.) * cos(pi * y / 2.) * cos(pi * z / 2.) / 4.;
69 case 2:
70 return 0;
71 default:
72 libmesh_error_msg("Invalid component = " << component);
73 }
74
75 // dummy
76 return 0.0;
77}

References libMesh::pi, and libMesh::Real.