- blockANY_BLOCK_ID List of subdomains for kernel coverage and material coverage checks. Setting this parameter is equivalent to setting 'kernel_coverage_block_list' and 'material_coverage_block_list' as well as using 'ONLY_LIST' as the coverage check mode.
Default:ANY_BLOCK_ID
C++ Type:std::vector<SubdomainName>
Controllable:No
Description:List of subdomains for kernel coverage and material coverage checks. Setting this parameter is equivalent to setting 'kernel_coverage_block_list' and 'material_coverage_block_list' as well as using 'ONLY_LIST' as the coverage check mode.
- linear_sys_namesThe linear system names
C++ Type:std::vector<LinearSystemName>
Controllable:No
Description:The linear system names
- regard_general_exceptions_as_errorsFalseIf we catch an exception during residual/Jacobian evaluaton for which we don't have specific handling, immediately error instead of allowing the time step to be cut
Default:False
C++ Type:bool
Controllable:No
Description:If we catch an exception during residual/Jacobian evaluaton for which we don't have specific handling, immediately error instead of allowing the time step to be cut
- solveTrueWhether or not to actually solve the Nonlinear system. This is handy in the case that all you want to do is execute AuxKernels, Transfers, etc. without actually solving anything
Default:True
C++ Type:bool
Controllable:Yes
Description:Whether or not to actually solve the Nonlinear system. This is handy in the case that all you want to do is execute AuxKernels, Transfers, etc. without actually solving anything
FEProblemBase
The FEProblemBase class is an intermediate base class containing all of the common logic for running the various MOOSE simulations. MOOSE has two built-in types of problems FEProblem for solving "normal" physics problems and EigenProblem for solving Eigenvalue problems. Additionally, MOOSE contains an ExternalProblem problem useful for creating "MOOSE-wrapped Apps".
A normal (default) Problem object that contains a single NonlinearSystem and a single AuxiliarySystem object.
Convenience Zeros
One of the advantages of the MOOSE framework is the ease at building up Multiphysics simulations. Coupling is a first-class feature and filling out residuals, or material properties with coupling is very natural. When coupling is optional, it is often handy to have access to valid data structures that may be used in-place of the actual coupled variables. This makes it possible to avoid branch statements inside of your residual statements and other computationally intensive areas of code. One of the ways MOOSE makes this possible is by making several different types of "zero" variables available. The following statements illustrate how optional coupling may be implemented with these zeros.
// In the constructor initialization list of a Kernel
_velocity_vector(isParamValid("velocity_vector") ? coupledGradient("velocity_vector") : _grad_zero)
// The residual statement
return _test[_i][_qp] * (_velocity_vector[_qp] * _grad_u[_qp]);
Selective Reinit
The system automatically determines which variables should be made available for use on the current element ("reinit"-ed). Each variable is tracked on calls through the coupling interface. Variables that are not needed are simply not prepared. This can save significant amounts of time on systems that have several active variables.
Finite Element Concepts
Shape Functions
While the weak form is essentially what you need for adding physics to MOOSE, in traditional finite element software more work is necessary.
We need to discretize our weak form and select a set of simple "basis functions" amenable for manipulation by a computer.
Example of linear Lagrange shape function associated with single node on triangular mesh
1D linear Lagrange shape functions
Our discretized expansion of takes on the following form:
The here are called "basis functions"
These form the basis for the "trial function",
Analogous to the we used earlier
The gradient of can be expanded similarly:
In the Galerkin finite element method, the same basis functions are used for both the trial and test functions:
Substituting these expansions back into our weak form, we get:
The left-hand side of the equation above is what we generally refer to as the component of our "Residual Vector" and write as .
Shape Functions are the functions that get multiplied by coefficients and summed to form the solution.
Individual shape functions are restrictions of the global basis functions to individual elements.
They are analogous to the functions from polynomial fitting (in fact, you can use those as shape functions).
Typical shape function families: Lagrange, Hermite, Hierarchic, Monomial, Clough-Toucher - MOOSE has support for all of these.
Lagrange shape functions are the most common. - They are interpolary at the nodes, i.e., the coefficients correspond to the values of the functions at the nodes.
Example 1D Shape Functions
Linear Lagrange
Quadratic Lagrange
Cubic Lagrange
Cubic Hermite
2D Lagrange Shape Functions
Example bi-quadratic basis functions defined on the Quad9 element:
is associated to a "corner" node, it is zero on the opposite edges.
is associated to a "mid-edge" node, it is zero on all other edges.
is associated to the "center" node, it is symmetric and on the element.
Numerical Integration
The only remaining non-discretized parts of the weak form are the integrals.
We split the domain integral into a sum of integrals over elements:
Through a change of variables, the element integrals are mapped to integrals over the "reference" elements .
is the Jacobian of the map from the physical element to the reference element.
To approximate the reference element integrals numerically, we use quadrature (typically "Gaussian Quadrature"):
is the spatial location of the th quadrature point and is its associated weight.
MOOSE handles multiplication by the Jacobian and the weight automatically, thus your
Kernelis only responsible for computing the part of the integrand.Under certain common situations, the quadrature approximation is exact! - For example, in 1 dimension, Gaussian Quadrature can exactly integrate polynomials of order with quadrature points.
Note that sampling at the quadrature points yields:
And our weak form becomes:
The second sum is over boundary faces, .
MOOSE
Kernelsmust provide each of the terms in square brackets (evaluated at or as necessary).
Input Parameters
- allow_initial_conditions_with_restartFalseTrue to allow the user to specify initial conditions when restarting. Initial conditions can override any restarted field
Default:False
C++ Type:bool
Controllable:No
Description:True to allow the user to specify initial conditions when restarting. Initial conditions can override any restarted field
- force_restartFalseEXPERIMENTAL: If true, a sub_app may use a restart file instead of using of using the master backup file
Default:False
C++ Type:bool
Controllable:No
Description:EXPERIMENTAL: If true, a sub_app may use a restart file instead of using of using the master backup file
- restart_file_baseFile base name used for restart (e.g.
/ or /LATEST to grab the latest file available) C++ Type:FileNameNoExtension
Controllable:No
Description:File base name used for restart (e.g.
/ or /LATEST to grab the latest file available)
Restart Parameters
- allow_invalid_solutionFalseSet to true to allow convergence even though the solution has been marked as 'invalid'
Default:False
C++ Type:bool
Controllable:No
Description:Set to true to allow convergence even though the solution has been marked as 'invalid'
- immediately_print_invalid_solutionFalseWhether or not to report invalid solution warnings at the time the warning is produced instead of after the calculation
Default:False
C++ Type:bool
Controllable:No
Description:Whether or not to report invalid solution warnings at the time the warning is produced instead of after the calculation
- show_invalid_solution_consoleTrueSet to true to show the invalid solution occurance summary in console
Default:True
C++ Type:bool
Controllable:No
Description:Set to true to show the invalid solution occurance summary in console
Solution Validity Control Parameters
- boundary_restricted_elem_integrity_checkTrueSet to false to disable checking of boundary restricted elemental object variable dependencies, e.g. are the variable dependencies defined on the selected boundaries?
Default:True
C++ Type:bool
Controllable:No
Description:Set to false to disable checking of boundary restricted elemental object variable dependencies, e.g. are the variable dependencies defined on the selected boundaries?
- boundary_restricted_node_integrity_checkTrueSet to false to disable checking of boundary restricted nodal object variable dependencies, e.g. are the variable dependencies defined on the selected boundaries?
Default:True
C++ Type:bool
Controllable:No
Description:Set to false to disable checking of boundary restricted nodal object variable dependencies, e.g. are the variable dependencies defined on the selected boundaries?
- check_uo_aux_stateFalseTrue to turn on a check that no state presents during the evaluation of user objects and aux kernels
Default:False
C++ Type:bool
Controllable:No
Description:True to turn on a check that no state presents during the evaluation of user objects and aux kernels
- error_on_jacobian_nonzero_reallocationFalseThis causes PETSc to error if it had to reallocate memory in the Jacobian matrix due to not having enough nonzeros
Default:False
C++ Type:bool
Controllable:No
Description:This causes PETSc to error if it had to reallocate memory in the Jacobian matrix due to not having enough nonzeros
- fv_bcs_integrity_checkTrueSet to false to disable checking of overlapping Dirichlet and Flux BCs and/or multiple DirichletBCs per sideset
Default:True
C++ Type:bool
Controllable:No
Description:Set to false to disable checking of overlapping Dirichlet and Flux BCs and/or multiple DirichletBCs per sideset
- kernel_coverage_block_listList of subdomains for kernel coverage check. The meaning of this list is controlled by the parameter 'kernel_coverage_check' (whether this is the list of subdomains to be checked, not to be checked or not taken into account).
C++ Type:std::vector<SubdomainName>
Controllable:No
Description:List of subdomains for kernel coverage check. The meaning of this list is controlled by the parameter 'kernel_coverage_check' (whether this is the list of subdomains to be checked, not to be checked or not taken into account).
- kernel_coverage_checkTRUEControls, if and how a kernel subdomain coverage check is performed. With 'TRUE' or 'ON' all subdomains are checked (the default). Setting 'FALSE' or 'OFF' will disable the check for all subdomains. To exclude a predefined set of subdomains 'SKIP_LIST' is to be used, while the subdomains to skip are to be defined in the parameter 'kernel_coverage_block_list'. To limit the check to a list of subdomains, 'ONLY_LIST' is to be used (again, using the parameter 'kernel_coverage_block_list').
Default:TRUE
C++ Type:MooseEnum
Options:FALSE, TRUE, OFF, ON, SKIP_LIST, ONLY_LIST
Controllable:No
Description:Controls, if and how a kernel subdomain coverage check is performed. With 'TRUE' or 'ON' all subdomains are checked (the default). Setting 'FALSE' or 'OFF' will disable the check for all subdomains. To exclude a predefined set of subdomains 'SKIP_LIST' is to be used, while the subdomains to skip are to be defined in the parameter 'kernel_coverage_block_list'. To limit the check to a list of subdomains, 'ONLY_LIST' is to be used (again, using the parameter 'kernel_coverage_block_list').
- material_coverage_block_listList of subdomains for material coverage check. The meaning of this list is controlled by the parameter 'material_coverage_check' (whether this is the list of subdomains to be checked, not to be checked or not taken into account).
C++ Type:std::vector<SubdomainName>
Controllable:No
Description:List of subdomains for material coverage check. The meaning of this list is controlled by the parameter 'material_coverage_check' (whether this is the list of subdomains to be checked, not to be checked or not taken into account).
- material_coverage_checkTRUEControls, if and how a material subdomain coverage check is performed. With 'TRUE' or 'ON' all subdomains are checked (the default). Setting 'FALSE' or 'OFF' will disable the check for all subdomains. To exclude a predefined set of subdomains 'SKIP_LIST' is to be used, while the subdomains to skip are to be defined in the parameter 'material_coverage_block_list'. To limit the check to a list of subdomains, 'ONLY_LIST' is to be used (again, using the parameter 'material_coverage_block_list').
Default:TRUE
C++ Type:MooseEnum
Options:FALSE, TRUE, OFF, ON, SKIP_LIST, ONLY_LIST
Controllable:No
Description:Controls, if and how a material subdomain coverage check is performed. With 'TRUE' or 'ON' all subdomains are checked (the default). Setting 'FALSE' or 'OFF' will disable the check for all subdomains. To exclude a predefined set of subdomains 'SKIP_LIST' is to be used, while the subdomains to skip are to be defined in the parameter 'material_coverage_block_list'. To limit the check to a list of subdomains, 'ONLY_LIST' is to be used (again, using the parameter 'material_coverage_block_list').
- material_dependency_checkTrueSet to false to disable material dependency check
Default:True
C++ Type:bool
Controllable:No
Description:Set to false to disable material dependency check
- skip_nl_system_checkFalseTrue to skip the NonlinearSystem check for work to do (e.g. Make sure that there are variables to solve for).
Default:False
C++ Type:bool
Controllable:No
Description:True to skip the NonlinearSystem check for work to do (e.g. Make sure that there are variables to solve for).
Simulation Checks Parameters
- control_tagsAdds user-defined labels for accessing object parameters via control logic.
C++ Type:std::vector<std::string>
Controllable:No
Description:Adds user-defined labels for accessing object parameters via control logic.
- default_ghostingFalseWhether or not to use libMesh's default amount of algebraic and geometric ghosting
Default:False
C++ Type:bool
Controllable:No
Description:Whether or not to use libMesh's default amount of algebraic and geometric ghosting
- enableTrueSet the enabled status of the MooseObject.
Default:True
C++ Type:bool
Controllable:No
Description:Set the enabled status of the MooseObject.
Advanced Parameters
- extra_tag_matricesExtra matrices to add to the system that can be filled by objects which compute residuals and Jacobians (Kernels, BCs, etc.) by setting tags on them. The outer index is for which nonlinear system the extra tag vectors should be added for
C++ Type:std::vector<std::vector<TagName>>
Controllable:No
Description:Extra matrices to add to the system that can be filled by objects which compute residuals and Jacobians (Kernels, BCs, etc.) by setting tags on them. The outer index is for which nonlinear system the extra tag vectors should be added for
- extra_tag_solutionsExtra solution vectors to add to the system that can be used by objects for coupling variable values stored in them.
C++ Type:std::vector<TagName>
Controllable:No
Description:Extra solution vectors to add to the system that can be used by objects for coupling variable values stored in them.
- extra_tag_vectorsExtra vectors to add to the system that can be filled by objects which compute residuals and Jacobians (Kernels, BCs, etc.) by setting tags on them. The outer index is for which nonlinear system the extra tag vectors should be added for
C++ Type:std::vector<std::vector<TagName>>
Controllable:No
Description:Extra vectors to add to the system that can be filled by objects which compute residuals and Jacobians (Kernels, BCs, etc.) by setting tags on them. The outer index is for which nonlinear system the extra tag vectors should be added for
- not_zeroed_tag_vectorsExtra vector tags which the sytem will not zero when other vector tags are zeroed. The outer index is for which nonlinear system the extra tag vectors should be added for
C++ Type:std::vector<std::vector<TagName>>
Controllable:No
Description:Extra vector tags which the sytem will not zero when other vector tags are zeroed. The outer index is for which nonlinear system the extra tag vectors should be added for
Contribution To Tagged Field Data Parameters
- identify_variable_groups_in_nlTrueWhether to identify variable groups in nonlinear systems. This affects dof ordering
Default:True
C++ Type:bool
Controllable:No
Description:Whether to identify variable groups in nonlinear systems. This affects dof ordering
- ignore_zeros_in_jacobianFalseDo not explicitly store zero values in the Jacobian matrix if true
Default:False
C++ Type:bool
Controllable:No
Description:Do not explicitly store zero values in the Jacobian matrix if true
- nl_sys_namesnl0 The nonlinear system names
Default:nl0
C++ Type:std::vector<NonlinearSystemName>
Controllable:No
Description:The nonlinear system names
- previous_nl_solution_requiredFalseTrue to indicate that this calculation requires a solution vector for storing the previous nonlinear iteration.
Default:False
C++ Type:bool
Controllable:No
Description:True to indicate that this calculation requires a solution vector for storing the previous nonlinear iteration.
- restore_original_nonzero_patternFalseWhether we should reset matrix memory for every Jacobian evaluation. This option is useful if the sparsity pattern is constantly changing and you are using hash table assembly or if you wish to continually restore the matrix to the originally preallocated sparsity pattern computed by relationship managers.
Default:False
C++ Type:bool
Controllable:No
Description:Whether we should reset matrix memory for every Jacobian evaluation. This option is useful if the sparsity pattern is constantly changing and you are using hash table assembly or if you wish to continually restore the matrix to the originally preallocated sparsity pattern computed by relationship managers.
- use_hash_table_matrix_assemblyFalseWhether to assemble matrices using hash tables instead of preallocating matrix memory. This can be a good option if the sparsity pattern changes throughout the course of the simulation.
Default:False
C++ Type:bool
Controllable:No
Description:Whether to assemble matrices using hash tables instead of preallocating matrix memory. This can be a good option if the sparsity pattern changes throughout the course of the simulation.
- use_nonlinearTrueDetermines whether to use a Nonlinear vs a Eigenvalue system (Automatically determined based on executioner)
Default:True
C++ Type:bool
Controllable:No
Description:Determines whether to use a Nonlinear vs a Eigenvalue system (Automatically determined based on executioner)
Nonlinear System(S) Parameters
- near_null_space_dimension0The dimension of the near nullspace
Default:0
C++ Type:unsigned int
Controllable:No
Description:The dimension of the near nullspace
- null_space_dimension0The dimension of the nullspace
Default:0
C++ Type:unsigned int
Controllable:No
Description:The dimension of the nullspace
- transpose_null_space_dimension0The dimension of the transpose nullspace
Default:0
C++ Type:unsigned int
Controllable:No
Description:The dimension of the transpose nullspace
Null Space Removal Parameters
- parallel_barrier_messagingFalseDisplays messaging from parallel barrier notifications when executing or transferring to/from Multiapps (default: false)
Default:False
C++ Type:bool
Controllable:No
Description:Displays messaging from parallel barrier notifications when executing or transferring to/from Multiapps (default: false)
- verbose_multiappsFalseSet to True to enable verbose screen printing related to MultiApps
Default:False
C++ Type:bool
Controllable:No
Description:Set to True to enable verbose screen printing related to MultiApps
- verbose_restoreFalseSet to True to enable verbose screen printing related to solution restoration
Default:False
C++ Type:bool
Controllable:No
Description:Set to True to enable verbose screen printing related to solution restoration
- verbose_setupfalseSet to 'true' to have the problem report on any object created. Set to 'extra' to also display all parameters.
Default:false
C++ Type:MooseEnum
Options:false, true, extra
Controllable:No
Description:Set to 'true' to have the problem report on any object created. Set to 'extra' to also display all parameters.
commentnote
When "check_uo_aux_state" is set to true, MOOSE will evaluate user objects (including all postprocessors and vector postprocessors) and auxiliary kernels on every execute flag except linear twice. It then compares the results after two evaluations including the auxiliary system solutions and all the real reporter values added by user objects. When MOOSE sees a difference, it will issue an error indicating that there are unresolved dependencies during the evaluation because otherwise the results should only depend on primary solutions and should not change. MOOSE also prints the details about the difference to help users removing the states caused by these unresolved dependencies.
Verbosity Parameters
Input Files
- (test/tests/misc/block_user_object_check/block_check.i)
- (modules/heat_transfer/test/tests/meshed_gap_thermal_contact/meshed_annulus_thermal_contact.i)
- (test/tests/kokkos/petsc_gpu/kokkos_2d_diffusion_tag_vector.i)
- (test/tests/auxkernels/element_length/element_length.i)
- (modules/contact/test/tests/verification/patch_tests/cyl_1/cyl1_mu_0_2_pen.i)
- (test/tests/quadrature/order/elem5_side7.i)
- (tutorials/darcy_thermo_mech/step06_coupled_darcy_heat_conduction/problems/step6a_coupled.i)
- (tutorials/darcy_thermo_mech/step05_heat_conduction/problems/step5b_transient.i)
- (modules/misc/test/tests/sensor_postprocessor/transient_thermocouple_sensor.i)
- (tutorials/darcy_thermo_mech/step05_heat_conduction/tests/bcs/outflow/outflow.i)
- (tutorials/tutorial01_app_development/step09_mat_props/problems/pressure_diffusion.i)
- (tutorials/tutorial01_app_development/step10_auxkernels/problems/pressure_diffusion.i)
- (modules/phase_field/test/tests/boundary_intersecting_features/boundary_intersecting_features.i)
- (test/tests/functions/image_function/crop.i)
- (test/tests/restart/restartable_types/restartable_types.i)
- (test/tests/fvkernels/fv_simple_diffusion/unstructured-rz.i)
- (test/tests/materials/generic_materials/ad_generic_constant_symmetric_rank_two_tensor.i)
- (modules/contact/test/tests/verification/patch_tests/cyl_2/cyl2_template1.i)
- (test/tests/transfers/multiapp_copy_transfer/between_multiapps/sub1.i)
- (modules/contact/test/tests/verification/patch_tests/cyl_2/cyl2_mu_0_2_pen.i)
- (test/tests/misc/solution_invalid/solution_invalid.i)
- (test/tests/geomsearch/patch_update_strategy/auto.i)
- (modules/phase_field/test/tests/initial_conditions/ClosePackIC_3D.i)
- (modules/solid_mechanics/test/tests/crack_loop/crack_loop.i)
- (test/tests/misc/block_boundary_material_check/bc_check.i)
- (test/tests/transfers/multiapp_userobject_transfer/sub.i)
- (tutorials/darcy_thermo_mech/step06_coupled_darcy_heat_conduction/tests/materials/packed_column/packed_column.i)
- (test/tests/misc/check_error/uo_vector_pps_name_collision_test.i)
- (test/tests/functions/image_function/error/threshold_values.i)
- (test/tests/auxkernels/element_adaptivity_level_aux/element_hierarchy_test.i)
- (test/tests/transfers/multiapp_copy_transfer/multivariable_copy/parent.i)
- (test/tests/auxkernels/vector_function_aux/vector_function_aux.i)
- (modules/contact/test/tests/verification/patch_tests/cyl_4/cyl4_mu_0_2_pen.i)
- (test/tests/meshgenerators/image_mesh_generator/image_3d.i)
- (test/tests/misc/solution_invalid/solution_invalid_timehistory.i)
- (test/tests/preconditioners/fsp/fsp_test_image.i)
- (test/tests/functions/image_function/flip_dual.i)
- (test/tests/meshmodifiers/element_subdomain_modifier/moving_boundary_h_refinement.i)
- (tutorials/darcy_thermo_mech/step10_multiapps/problems/step10.i)
- (tutorials/darcy_thermo_mech/step06_coupled_darcy_heat_conduction/tests/kernels/darcy_advection/darcy_advection.i)
- (modules/phase_field/test/tests/reconstruction/2phase_reconstruction2.i)
- (modules/contact/test/tests/verification/patch_tests/ring_3/ring3_mu_0_2_pen.i)
- (test/tests/functions/image_function/image_2d.i)
- (modules/heat_transfer/test/tests/meshed_gap_thermal_contact/meshed_gap_thermal_contact_constant_conductance.i)
- (test/tests/auxkernels/pp_depend/pp_depend_indirect_wrong.i)
- (modules/phase_field/test/tests/feature_flood_test/parallel_feature_count.i)
- (test/tests/misc/stop_for_debugger/stop_for_debugger.i)
- (tutorials/darcy_thermo_mech/step02_darcy_pressure/problems/step2.i)
- (test/tests/meshgenerators/subdomain_bounding_box_generator/oriented_subdomain_bounding_box_generator.i)
- (modules/phase_field/test/tests/initial_conditions/MultiSmoothSuperellipsoidIC_2D.i)
- (test/tests/meshgenerators/flip_sideset_generator/flux_flip_2D.i)
- (test/tests/parser/vector_multimooseenum/vmme.i)
- (test/tests/auxkernels/pp_depend/pp_depend.i)
- (test/tests/materials/generic_materials/ad_generic_constant_real_vector_value.i)
- (tutorials/darcy_thermo_mech/step10_multiapps/tests/auxkernels/corrosion/corrosion.i)
- (test/tests/transfers/multiapp_copy_transfer/constant_monomial_to_sub/sub.i)
- (test/tests/transfers/multiapp_copy_transfer/constant_monomial_from_sub/sub.i)
- (modules/phase_field/test/tests/reconstruction/2phase_reconstruction3.i)
- (test/tests/multiapps/command_line/parent.i)
- (modules/phase_field/test/tests/initial_conditions/PolycrystalVoronoiVoidIC_periodic.i)
- (modules/porous_flow/test/tests/fluidstate/theis_brineco2.i)
- (modules/phase_field/test/tests/initial_conditions/BlockRestriction.i)
- (test/tests/indicators/value_jump_indicator/vec_value_jump_indicator.i)
- (test/tests/tag/2d_diffusion_tag_vector.i)
- (test/tests/problems/no_solve/no_solve.i)
- (test/tests/functions/image_function/image_mesh_2d.i)
- (modules/stochastic_tools/test/tests/multiapps/batch_commandline_control/sub.i)
- (test/tests/transfers/errors/sub.i)
- (tutorials/darcy_thermo_mech/step02_darcy_pressure/tests/kernels/darcy_pressure/darcy_pressure.i)
- (test/tests/misc/update-displaced-aux-local-soln/test.i)
- (modules/contact/test/tests/verification/patch_tests/cyl_3/cyl3_mu_0_2_pen.i)
- (modules/phase_field/test/tests/reconstruction/2phase_reconstruction4.i)
- (modules/stochastic_tools/test/tests/multiapps/commandline_control/sub.i)
- (tutorials/darcy_thermo_mech/step07_adaptivity/problems/step7a_coarse.i)
- (modules/phase_field/test/tests/grain_tracker_test/grain_tracker_volume_changing.i)
- (test/tests/tag/fe-mass-matrix.i)
- (test/tests/misc/block_boundary_material_check/dgkernel_check_block.i)
- (test/tests/markers/q_point_marker/q_point_marker.i)
- (modules/phase_field/test/tests/initial_conditions/MultiSmoothSuperellipsoidIC_3D.i)
- (test/tests/geomsearch/patch_update_strategy/never.i)
- (test/tests/quadrature/order/order5.i)
- (test/tests/coord_type/coord_type_rz_integrated.i)
- (tutorials/darcy_thermo_mech/step01_diffusion/problems/step1.i)
- (modules/heat_transfer/test/tests/meshed_gap_thermal_contact/meshed_gap_thermal_contact.i)
- (test/tests/multiapps/command_line/parent_common_vector.i)
- (test/tests/misc/block_user_object_check/coupled_check.i)
- (test/tests/userobjects/function_layered_integral/function_layered_integral.i)
- (test/tests/functions/image_function/image.i)
- (test/tests/functions/image_function/image_3d.i)
- (modules/misc/test/tests/sensor_postprocessor/transient_general_sensor.i)
- (modules/phase_field/test/tests/initial_conditions/PolycrystalVoronoiIC_periodic.i)
- (test/tests/kokkos/tag/kokkos_2d_diffusion_tag_vector.i)
- (modules/phase_field/test/tests/initial_conditions/HexPolycrystalIC_3D_columnar.i)
- (test/tests/functions/image_function/image_2d_elemental.i)
- (tutorials/darcy_thermo_mech/step07_adaptivity/problems/step7d_adapt_blocks.i)
- (test/tests/functions/image_function/subset.i)
- (test/tests/transfers/multiapp_copy_transfer/second_lagrange_to_sub/sub.i)
- (test/tests/transfers/multiapp_copy_transfer/linear_lagrange_from_sub/parent.i)
- (modules/stochastic_tools/test/tests/surrogates/pod_rb/boundary/sub.i)
- (tutorials/tutorial01_app_development/step06_input_params/problems/pressure_diffusion.i)
- (tutorials/darcy_thermo_mech/step11_action/problems/step11.i)
- (test/tests/functions/image_function/error/check_error.i)
- (test/tests/transfers/multiapp_userobject_transfer/tosub_displaced_sub.i)
- (test/tests/executioners/pp_binding/pp_binding_check.i)
- (test/tests/postprocessors/nodal_extreme_value/nodal_proxy_extreme_value.i)
- (test/tests/transfers/multiapp_copy_transfer/constant_monomial_from_sub/parent.i)
- (tutorials/darcy_thermo_mech/step01_diffusion/tests/kernels/simple_diffusion/simple_diffusion.i)
- (tutorials/darcy_thermo_mech/step03_darcy_material/tests/kernels/darcy_pressure/darcy_pressure.i)
- (test/tests/materials/generic_materials/generic_constant_std_vector_real.i)
- (modules/contact/test/tests/verification/patch_tests/ring_2/ring2_mu_0_2_pen.i)
- (modules/phase_field/test/tests/grain_tracker_test/grain_tracker_remapping_test.i)
- (test/tests/quadrature/gauss_lobatto/gauss_lobatto.i)
- (test/tests/misc/check_error/uo_pps_name_collision_test.i)
- (test/tests/userobjects/shape_element_user_object/shape_side_uo_jac_test.i)
- (tutorials/darcy_thermo_mech/step09_mechanics/problems/step9.i)
- (test/tests/materials/generic_materials/generic_constant_symmetric_rank_two_tensor.i)
- (tutorials/darcy_thermo_mech/step04_velocity_aux/tests/auxkernels/velocity_aux/velocity_aux.i)
- (modules/phase_field/test/tests/reconstruction/1phase_reconstruction.i)
- (modules/combined/test/tests/3d-mortar-projection-tolerancing/test.i)
- (test/tests/functions/image_function/component.i)
- (modules/contact/test/tests/verification/patch_tests/ring_1/ring1_mu_0_2_pen.i)
- (test/tests/transfers/multiapp_copy_transfer/second_lagrange_from_sub/parent.i)
- (test/tests/problems/verbose_setup/sample.i)
- (modules/stochastic_tools/test/tests/surrogates/pod_rb/errors/sub.i)
- (test/tests/auxkernels/pp_depend/pp_depend_indirect_correct.i)
- (test/tests/restart/pointer_restart_errors/pointer_store_error.i)
- (tutorials/darcy_thermo_mech/step07_adaptivity/problems/step7c_adapt.i)
- (test/tests/userobjects/shape_element_user_object/shape_side_uo_physics_test.i)
- (test/tests/transfers/multiapp_copy_transfer/third_monomial_from_sub/parent.i)
- (test/tests/transfers/multiapp_copy_transfer/aux_to_aux/sub.i)
- (test/tests/markers/oriented_box_marker/obm.i)
- (test/tests/restart/pointer_restart_errors/pointer_load_error2.i)
- (modules/solid_mechanics/test/tests/interaction_integral_benchmark/input.i)
- (modules/phase_field/test/tests/phase_field_crystal/PFC_IC/PFC_IC_BCC_test.i)
- (test/tests/transfers/multiapp_copy_transfer/third_monomial_to_sub/sub.i)
- (tutorials/darcy_thermo_mech/step03_darcy_material/tests/materials/packed_column/packed_column.i)
- (test/tests/functions/image_function/shift_and_scale.i)
- (modules/phase_field/test/tests/initial_conditions/PolycrystalVoronoiVoidIC_moregrains.i)
- (test/tests/controls/restrict_exec_flag/sub.i)
- (tutorials/darcy_thermo_mech/step06_coupled_darcy_heat_conduction/problems/step6b_transient_inflow.i)
- (test/tests/functions/image_function/image_mesh_3d.i)
- (modules/phase_field/test/tests/reconstruction/2phase_reconstruction.i)
- (test/tests/controls/restrict_exec_flag/exec_flag_error.i)
- (tutorials/tutorial01_app_development/step05_kernel_object/problems/pressure_diffusion.i)
- (modules/stochastic_tools/examples/surrogates/pod_rb/2d_multireg/sub.i)
- (tutorials/darcy_thermo_mech/step06_coupled_darcy_heat_conduction/problems/step6c_decoupled.i)
- (modules/contact/test/tests/verification/patch_tests/ring_2/ring2_template1.i)
- (test/tests/preconditioners/pbp/pbp_dg_test.i)
- (test/tests/auxkernels/grad_component/grad_component_monomial.i)
- (test/tests/functions/image_function/threshold.i)
- (test/tests/transfers/transfer_once_per_fixed_point/parent.i)
- (test/tests/tag/2d_diffusion_tag_matrix.i)
- (tutorials/darcy_thermo_mech/step04_velocity_aux/problems/step4.i)
- (test/tests/restart/pointer_restart_errors/pointer_load_error.i)
- (test/tests/materials/generic_materials/generic_constant_rank_two_tensor.i)
- (test/tests/meshgenerators/image_mesh_generator/image_2d.i)
- (test/tests/materials/generic_materials/generic_constant_real_vector_value.i)
- (test/tests/misc/solution_invalid/solution_invalid_recover.i)
- (tutorials/darcy_thermo_mech/step08_postprocessors/problems/step8.i)
- (test/tests/multiapps/command_line/sub.i)
- (test/tests/misc/block_boundary_material_check/side_uo_check.i)
- (modules/phase_field/test/tests/initial_conditions/ClosePackIC.i)
- (test/tests/userobjects/message_from_input/message_from_input.i)
- (test/tests/functions/image_function/threshold_adapt.i)
- (modules/contact/test/tests/verification/patch_tests/ring_4/ring4_template1.i)
- (test/tests/functions/image_function/threshold_adapt_parallel.i)
- (test/tests/transfers/multiapp_copy_transfer/errors/sub.i)
- (test/tests/transfers/multiapp_conservative_transfer/sub_conservative_transfer.i)
- (test/tests/transfers/multiapp_conservative_transfer/secondary_negative_adjuster.i)
- (test/tests/transfers/multiapp_copy_transfer/between_multiapps/sub2.i)
- (modules/phase_field/test/tests/MultiSmoothCircleIC/test_problem.i)
- (tutorials/tutorial01_app_development/step02_input_file/problems/pressure_diffusion.i)
- (test/tests/misc/block_boundary_material_check/dgkernel_check_boundary.i)
- (modules/phase_field/test/tests/phase_field_crystal/PFC_IC/PFC_IC_FCC_test.i)
- (test/tests/transfers/multiapp_copy_transfer/third_monomial_from_sub/sub.i)
- (modules/contact/test/tests/verification/patch_tests/ring_3/ring3_template1.i)
- (test/tests/indicators/value_jump_indicator/value_jump_indicator_test.i)
- (test/tests/kokkos/tag/kokkos_2d_diffusion_tag_matrix.i)
- (test/tests/postprocessors/difference_pps/difference_depend_check.i)
- (test/tests/misc/check_error/add_aux_variable_multiple_subdomain_test.i)
- (test/tests/restart/restartable_types/restartable_types2.i)
- (modules/phase_field/test/tests/initial_conditions/PolycrystalVoronoiVoidIC_periodic_fromfile.i)
- (modules/contact/test/tests/verification/patch_tests/cyl_3/cyl3_template1.i)
- (test/tests/ics/integral_preserving_function_ic/sinusoidal_z.i)
- (tutorials/darcy_thermo_mech/step07_adaptivity/problems/step7b_fine.i)
- (test/tests/materials/generic_materials/generic_function_rank_two_tensor.i)
- (modules/stochastic_tools/test/tests/surrogates/pod_rb/internal/sub.i)
- (test/tests/meshgenerators/flip_sideset_generator/flux_flip_3D.i)
- (test/tests/transfers/multiapp_copy_transfer/aux_to_primary/sub.i)
- (modules/phase_field/test/tests/initial_conditions/PolycrystalVoronoi_fromfile.i)
- (test/tests/functions/image_function/image_3d_subset.i)
- (tutorials/darcy_thermo_mech/step05_heat_conduction/problems/step5c_outflow.i)
- (test/tests/kokkos/auxkernels/pp_depend/kokkos_pp_depend.i)
- (modules/contact/test/tests/verification/patch_tests/cyl_4/cyl4_template1.i)
- (modules/misc/test/tests/sensor_postprocessor/time_delay_test.i)
- (tutorials/darcy_thermo_mech/step05_heat_conduction/problems/step5a_steady.i)
- (test/tests/transfers/multiapp_copy_transfer/linear_lagrange_to_sub/sub.i)
- (test/tests/postprocessors/element_extreme_value/element_proxy_extreme_value.i)
- (modules/phase_field/test/tests/initial_conditions/PolycrystalVoronoiVoidIC_notperiodic.i)
- (modules/phase_field/test/tests/initial_conditions/RampIC.i)
- (test/tests/transfers/multiapp_copy_transfer/block_restriction/bi_direction.i)
- (test/tests/geomsearch/patch_update_strategy/always.i)
- (test/tests/transfers/multiapp_copy_transfer/array_variable_transfer/parent.i)
- (test/tests/multiapps/command_line/parent_wrong_size.i)
- (test/tests/postprocessors/element_extreme_functor_value/extreme_proxy_value.i)
- (tutorials/darcy_thermo_mech/step03_darcy_material/problems/step3.i)
- (test/tests/markers/block_restricted/marker_block.i)
- (modules/contact/test/tests/verification/patch_tests/ring_4/ring4_mu_0_2_pen.i)
- (test/tests/multiapps/command_line/parent_common.i)
- (test/tests/misc/check_error/uo_reporter_name_collision_test.i)
- (test/tests/preconditioners/pbp/pbp_test.i)
- (modules/contact/test/tests/verification/patch_tests/ring_1/ring1_template1.i)
- (test/tests/quadrature/order/code-order-bump.i)
- (test/tests/parser/vector_range_checking/all_pass.i)
- (test/tests/transfers/multiapp_userobject_transfer/tosub_sub.i)
- (test/tests/tag/mass-matrix.i)
- (test/tests/functions/image_function/flip.i)
- (test/tests/quadrature/order/block-order.i)
- (test/tests/postprocessors/constant/receiver.i)
- (test/tests/functions/image_function/flip_quad.i)
- (modules/contact/test/tests/verification/patch_tests/cyl_1/cyl1_template1.i)
- (test/tests/fvkernels/fv_simple_diffusion/dirichlet_rz.i)
- (test/tests/transfers/transfer_on_final/parent.i)
- (tutorials/darcy_thermo_mech/step03_darcy_material/problems/step3b.i)
- (test/tests/transfers/multiapp_copy_transfer/block_restriction/sub.i)
- (tutorials/tutorial01_app_development/step08_test_harness/problems/pressure_diffusion.i)
Child Objects
- (test/include/problems/SlowProblem.h)
- (test/include/problems/TagTestProblem.h)
- (modules/level_set/include/base/LevelSetReinitializationProblem.h)
- (modules/thermal_hydraulics/include/problems/THMProblem.h)
- (test/include/problems/FailingProblem.h)
- (modules/richards/include/base/RichardsMultiphaseProblem.h)
- (test/include/problems/FixedPointProblem.h)
- (modules/navier_stokes/test/include/problems/PrintMatricesNSProblem.h)
- (test/include/problems/MooseTestProblem.h)
- (test/include/problems/CheckActiveMatPropProblem.h)
- (modules/navier_stokes/include/problems/NavierStokesProblem.h)
- (modules/level_set/include/base/LevelSetProblem.h)
- (framework/include/problems/ReferenceResidualProblem.h)
References
No citations exist within this document.check_uo_aux_state
Default:False
C++ Type:bool
Controllable:No
Description:True to turn on a check that no state presents during the evaluation of user objects and aux kernels
(test/tests/misc/block_user_object_check/block_check.i)
[Mesh]
[./generator]
type = GeneratedMeshGenerator
dim = 2
nx = 10
ny = 5
[../]
[./left_block]
type = SubdomainBoundingBoxGenerator
input = generator
block_id = 1
bottom_left = '0 0 0'
top_right = '0.5 1 0'
[../]
[./right_block]
type = SubdomainBoundingBoxGenerator
input = left_block
block_id = 2
bottom_left = '0.5 0 0'
top_right = '1 1 0'
[../]
[]
[Variables]
[./var_1]
block = 1
initial_condition = 100
[../]
[./var_2]
block = 2
initial_condition = 200
[../]
[]
[Problem]
type = FEProblem
kernel_coverage_check = true
solve = false
[]
[Executioner]
type = Steady
[]
[Postprocessors]
[./obj]
type = NodalExtremeValue
variable = var_1
#block = 1 # this is what being tested, see the test spec
execute_on = 'initial'
[../]
[]
(modules/heat_transfer/test/tests/meshed_gap_thermal_contact/meshed_annulus_thermal_contact.i)
[Mesh]
[fmesh]
type = FileMeshGenerator
file = meshed_annulus.e
[]
[rename]
type = RenameBlockGenerator
input = fmesh
old_block = '1 2 3'
new_block = '1 4 3'
[]
[]
[Variables]
[./temp]
block = '1 3'
initial_condition = 1.0
[../]
[]
[Kernels]
[./hc]
type = HeatConduction
variable = temp
block = '1 3'
[../]
[./source]
type = HeatSource
variable = temp
block = 3
value = 10.0
[../]
[]
[BCs]
[./outside]
type = DirichletBC
variable = temp
boundary = 1
value = 1.0
[../]
[]
[ThermalContact]
[./gap_conductivity]
type = GapHeatTransfer
variable = temp
primary = 2
secondary = 3
emissivity_primary = 0
emissivity_secondary = 0
gap_conductivity = 0.5
[../]
[]
[Materials]
[./hcm]
type = HeatConductionMaterial
block = '1 3'
temp = temp
thermal_conductivity = 1
[../]
[]
[Problem]
type = FEProblem
kernel_coverage_check = false
material_coverage_check = false
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
[./out]
type = Exodus
[../]
[]
(test/tests/kokkos/petsc_gpu/kokkos_2d_diffusion_tag_vector.i)
[Mesh]
[square]
type = GeneratedMeshGenerator
nx = 2
ny = 2
dim = 2
[]
[]
[Variables]
[u]
order = FIRST
family = LAGRANGE
[]
[]
[AuxVariables]
[tag_variable1]
order = FIRST
family = LAGRANGE
[]
[tag_variable2]
order = FIRST
family = LAGRANGE
[]
[]
[KokkosKernels]
[diff]
type = KokkosDiffusion
variable = u
extra_vector_tags = 'vec_tag1 vec_tag2'
[]
[]
[KokkosAuxKernels]
[TagVectorAux1]
type = KokkosTagVectorAux
variable = tag_variable1
v = u
vector_tag = vec_tag1
[]
[TagVectorAux2]
type = KokkosTagVectorAux
variable = tag_variable2
v = u
vector_tag = vec_tag2
[]
[]
[KokkosBCs]
[left]
type = KokkosDirichletBC
variable = u
boundary = 3
value = 0
extra_vector_tags = vec_tag1
[]
[right]
type = KokkosDirichletBC
variable = u
boundary = 1
value = 1
extra_vector_tags = vec_tag2
[]
[]
[Problem]
type = FEProblem
extra_tag_vectors = 'vec_tag1 vec_tag2'
[]
[Executioner]
type = Steady
solve_type = 'NEWTON'
petsc_options_iname = '-vec_type -nl0_mat_type'
petsc_options_value = 'kokkos hypre'
[]
[Outputs]
exodus = true
[]
(test/tests/auxkernels/element_length/element_length.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 100
[]
[AuxVariables]
[./min]
order = CONSTANT
family = MONOMIAL
[../]
[./max]
order = CONSTANT
family = MONOMIAL
[../]
[]
[AuxKernels]
[./min]
type = ElementLengthAux
variable = min
method = min
execute_on = initial
[../]
[./max]
type = ElementLengthAux
variable = max
method = max
execute_on = initial
[../]
[../]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
[]
[Outputs]
execute_on = 'TIMESTEP_END'
exodus = true
[]
(modules/contact/test/tests/verification/patch_tests/cyl_1/cyl1_mu_0_2_pen.i)
[GlobalParams]
volumetric_locking_correction = true
displacements = 'disp_x disp_y'
[]
[Mesh]
file = cyl1_mesh.e
coord_type = RZ
[]
[Problem]
type = FEProblem
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[]
[AuxVariables]
[./stress_xx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zz]
order = CONSTANT
family = MONOMIAL
[../]
[./penetration]
[../]
[./saved_x]
[../]
[./saved_y]
[../]
[./diag_saved_x]
[../]
[./diag_saved_y]
[../]
[./inc_slip_x]
[../]
[./inc_slip_y]
[../]
[./accum_slip_x]
[../]
[./accum_slip_y]
[../]
[./tang_force_x]
[../]
[./tang_force_y]
[../]
[]
[Kernels]
[./TensorMechanics]
use_displaced_mesh = true
save_in = 'saved_x saved_y'
[../]
[]
[AuxKernels]
[./stress_xx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xx
index_i = 0
index_j = 0
execute_on = timestep_end
[../]
[./stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
execute_on = timestep_end
[../]
[./stress_xy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xy
index_i = 0
index_j = 1
execute_on = timestep_end
[../]
[./stress_zz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zz
index_i = 2
index_j = 2
execute_on = timestep_end
[../]
[./inc_slip_x]
type = PenetrationAux
variable = inc_slip_x
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./inc_slip_y]
type = PenetrationAux
variable = inc_slip_y
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./accum_slip_x]
type = PenetrationAux
variable = accum_slip_x
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./accum_slip_y]
type = PenetrationAux
variable = accum_slip_y
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./penetration]
type = PenetrationAux
variable = penetration
boundary = 3
paired_boundary = 4
[../]
[./tang_force_x]
type = PenetrationAux
variable = tang_force_x
quantity = tangential_force_x
boundary = 3
paired_boundary = 4
[../]
[./tang_force_y]
type = PenetrationAux
variable = tang_force_y
quantity = tangential_force_y
boundary = 3
paired_boundary = 4
[../]
[] # AuxKernels
[Postprocessors]
[./bot_react_x]
type = NodalSum
variable = saved_x
boundary = 1
[../]
[./bot_react_y]
type = NodalSum
variable = saved_y
boundary = 1
[../]
[./top_react_x]
type = NodalSum
variable = saved_x
boundary = 5
[../]
[./top_react_y]
type = NodalSum
variable = saved_y
boundary = 5
[../]
[./ref_resid_x]
type = NodalL2Norm
execute_on = timestep_end
variable = saved_x
[../]
[./ref_resid_y]
type = NodalL2Norm
execute_on = timestep_end
variable = saved_y
[../]
[./sigma_yy]
type = ElementAverageValue
variable = stress_yy
[../]
[./sigma_zz]
type = ElementAverageValue
variable = stress_zz
[../]
[./disp_x2]
type = NodalVariableValue
nodeid = 1
variable = disp_x
[../]
[./disp_x7]
type = NodalVariableValue
nodeid = 6
variable = disp_x
[../]
[./disp_y2]
type = NodalVariableValue
nodeid = 1
variable = disp_y
[../]
[./disp_y7]
type = NodalVariableValue
nodeid = 6
variable = disp_y
[../]
[./_dt]
type = TimestepSize
[../]
[./num_lin_it]
type = NumLinearIterations
[../]
[./num_nonlin_it]
type = NumNonlinearIterations
[../]
[]
[BCs]
[./bot_y]
type = DirichletBC
variable = disp_y
boundary = 1
value = 0.0
[../]
[./side_x]
type = DirichletBC
variable = disp_x
boundary = 2
value = 0.0
[../]
[./top_press]
type = Pressure
variable = disp_y
boundary = 5
factor = 109.89
[../]
[]
[Materials]
[./bot_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '1'
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./bot_strain]
type = ComputeAxisymmetricRZIncrementalStrain
block = '1'
[../]
[./bot_stress]
type = ComputeFiniteStrainElasticStress
block = '1'
[../]
[./top_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '2'
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./top_strain]
type = ComputeAxisymmetricRZIncrementalStrain
block = '2'
[../]
[./top_stress]
type = ComputeFiniteStrainElasticStress
block = '2'
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_factor_mat_solver_type'
petsc_options_value = 'lu superlu_dist'
line_search = 'none'
nl_abs_tol = 1e-7
nl_rel_tol = 1e-6
l_max_its = 50
nl_max_its = 100
dt = 1.0
end_time = 1.0
num_steps = 10
dtmin = 1.0
l_tol = 1e-4
[]
[VectorPostprocessors]
[./x_disp]
type = NodalValueSampler
variable = disp_x
boundary = '1 3 4 5'
sort_by = x
[../]
[./cont_press]
type = NodalValueSampler
variable = contact_pressure
boundary = '3'
sort_by = x
[../]
[]
[Outputs]
file_base = cyl1_mu_0_2_pen_out
print_linear_residuals = true
perf_graph = true
[./exodus]
type = Exodus
elemental_as_nodal = true
[../]
[./console]
type = Console
max_rows = 5
[../]
[./chkfile]
type = CSV
file_base = cyl1_mu_0_2_pen_check
show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x7 disp_y7 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
execute_vector_postprocessors_on = timestep_end
[../]
[./outfile]
type = CSV
delimiter = ' '
execute_vector_postprocessors_on = none
[../]
[]
[Contact]
[./leftright]
secondary = 3
primary = 4
model = coulomb
formulation = penalty
normalize_penalty = true
tangential_tolerance = 1e-3
friction_coefficient = 0.2
penalty = 1e+9
[../]
[]
(test/tests/quadrature/order/elem5_side7.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 1
ny = 1
nz = 0
elem_type = QUAD4
[]
[Postprocessors]
[./numsideqps]
type = NumSideQPs
boundary = 0
[../]
[./numelemqps]
type = NumElemQPs
block = 0
[../]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
[./Quadrature]
order = third
element_order = fifth
side_order = seventh
[]
[]
[Outputs]
execute_on = 'timestep_end'
exodus = false
csv = true
[]
(tutorials/darcy_thermo_mech/step06_coupled_darcy_heat_conduction/problems/step6a_coupled.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 200
ny = 10
xmax = 0.304 # Length of test chamber
ymax = 0.0257 # Test chamber radius
[]
coord_type = RZ
rz_coord_axis = X
[]
[Variables]
[pressure]
[]
[temperature]
initial_condition = 300 # Start at room temperature
[]
[]
[Kernels]
[darcy_pressure]
type = DarcyPressure
variable = pressure
[]
[heat_conduction]
type = ADHeatConduction
variable = temperature
[]
[heat_conduction_time_derivative]
type = ADHeatConductionTimeDerivative
variable = temperature
[]
[heat_convection]
type = DarcyAdvection
variable = temperature
pressure = pressure
[]
[]
[BCs]
[inlet_temperature]
type = FunctionDirichletBC
variable = temperature
boundary = left
function = 'if(t<0,350+50*t,350)'
[]
[outlet_temperature]
type = HeatConductionOutflow
variable = temperature
boundary = right
[]
[inlet]
type = DirichletBC
variable = pressure
boundary = left
value = 4000 # (Pa) From Figure 2 from paper. First data point for 1mm spheres.
[]
[outlet]
type = DirichletBC
variable = pressure
boundary = right
value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
[]
[]
[Materials/column]
type = PackedColumn
temperature = temperature
radius = 1
[]
[AuxVariables/velocity]
order = CONSTANT
family = MONOMIAL_VEC
[]
[AuxKernels/velocity]
type = DarcyVelocity
variable = velocity
execute_on = timestep_end
pressure = pressure
[]
[Problem]
type = FEProblem
[]
[Executioner]
type = Transient
end_time = 100
dt = 0.25
start_time = -1
solve_type = NEWTON
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
automatic_scaling = true
steady_state_tolerance = 1e-5
steady_state_detection = true
[TimeStepper]
type = FunctionDT
function = 'if(t<0,0.1,0.25)'
[]
[]
[Outputs]
exodus = true
[]
(tutorials/darcy_thermo_mech/step05_heat_conduction/problems/step5b_transient.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 100
ny = 10
xmax = 0.304 # Length of test chamber
ymax = 0.0257 # Test chamber radius
[]
coord_type = RZ
rz_coord_axis = X
[]
[Variables]
[temperature]
initial_condition = 300 # Start at room temperature
[]
[]
[Kernels]
[heat_conduction]
type = ADHeatConduction
variable = temperature
[]
[heat_conduction_time_derivative]
type = ADHeatConductionTimeDerivative
variable = temperature
specific_heat = specific_heat
density_name = density
[]
[]
[BCs]
[inlet_temperature]
type = DirichletBC
variable = temperature
boundary = left
value = 350 # (K)
[]
[outlet_temperature]
type = DirichletBC
variable = temperature
boundary = right
value = 300 # (K)
[]
[]
[Materials/steel]
type = ADGenericConstantMaterial
prop_names = 'thermal_conductivity specific_heat density'
prop_values = '18 0.466 8000' # W/m*K, J/kg-K, kg/m^3 @ 296K
[]
[Problem]
type = FEProblem
[]
[Executioner]
type = Transient
num_steps = 10
solve_type = NEWTON
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(modules/misc/test/tests/sensor_postprocessor/transient_thermocouple_sensor.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 10
ny = 10
[]
coord_type = RZ
rz_coord_axis = X
[]
[Variables]
[temperature]
initial_condition = 600 # Start at room temperature
[]
[]
[Kernels]
[heat_conduction]
type = ADMatDiffusion
variable = temperature
diffusivity = thermal_conductivity
[]
[heat_conduction_time_derivative]
type = ADTimeDerivative
variable = temperature
[]
[]
[BCs]
[inlet_temperature]
type = DirichletBC
variable = temperature
boundary = left
value = 600 # (K)
[]
[outlet_temperature]
type = DirichletBC
variable = temperature
boundary = right
value = 602 # (K)
[]
[]
[Materials]
[steel]
type = ADGenericConstantMaterial
prop_names = 'thermal_conductivity specific_heat density'
prop_values = '18 0.466 80' # W/m*K, J/kg-K, kg/m^3 @ 296K
[]
[]
[Problem]
type = FEProblem
[]
[Postprocessors]
[input_signal_pp]
type = ElementAverageValue
variable = temperature
[]
[thermo_sensor_pp]
type = ThermocoupleSensorPostprocessor
input_signal = input_signal_pp
drift_function = '1'
delay_function = '0.1'
efficiency_function = '1'
signalToNoise_function = '1.0'
noise_std_dev_function = '1'
uncertainty_std_dev_function = '1'
[]
[]
[Executioner]
type = Transient
line_search = none
dt = 0.1
num_steps = 50
nl_rel_tol = 1e-02
nl_abs_tol = 1e-8
solve_type = NEWTON
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
csv = true
[]
(tutorials/darcy_thermo_mech/step05_heat_conduction/tests/bcs/outflow/outflow.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 30
ny = 5
xmax = 0.304 # Length of test chamber
ymax = 0.0257 # Test chamber radius
[]
coord_type = RZ
rz_coord_axis = X
[]
[Variables]
[temperature]
initial_condition = 300 # Start at room temperature
[]
[]
[Kernels]
[heat_conduction]
type = ADHeatConduction
variable = temperature
[]
[heat_conduction_time_derivative]
type = ADHeatConductionTimeDerivative
variable = temperature
[]
[]
[BCs]
[inlet_temperature]
type = DirichletBC
variable = temperature
boundary = left
value = 350 # (K)
[]
[outlet_temperature]
type = HeatConductionOutflow
variable = temperature
boundary = right
[]
[]
[Materials]
[steel]
type = ADGenericConstantMaterial
prop_names = 'thermal_conductivity specific_heat density'
prop_values = '18 466 8000' # W/m*K, J/kg-K, kg/m^3 @ 296K
[]
[]
[Problem]
type = FEProblem
[]
[Executioner]
type = Transient
num_steps = 2
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(tutorials/tutorial01_app_development/step09_mat_props/problems/pressure_diffusion.i)
[Mesh]
type = GeneratedMesh # Can generate simple lines, rectangles and rectangular prisms
dim = 2 # Dimension of the mesh
nx = 100 # Number of elements in the x direction
ny = 10 # Number of elements in the y direction
xmax = 0.304 # Length of test chamber
ymax = 0.0257 # Test chamber radius
rz_coord_axis = X # Which axis the symmetry is around
coord_type = RZ # Axisymmetric RZ
[]
[Problem]
type = FEProblem # This is the "normal" type of Finite Element Problem in MOOSE
[]
[Variables]
[pressure]
# Adds a Linear Lagrange variable by default
[]
[]
[Kernels]
[diffusion]
type = DarcyPressure # Zero-gravity, divergence-free form of Darcy's law
variable = pressure # Operate on the "pressure" variable from above
[]
[]
[Materials]
[filter]
type = PackedColumn # Provides permeability and viscosity of water through packed 1mm spheres
[]
[]
[BCs]
[inlet]
type = ADDirichletBC # Simple u=value BC
variable = pressure # Variable to be set
boundary = left # Name of a sideset in the mesh
value = 4000 # (Pa) From Figure 2 from paper. First data point for 1mm spheres.
[]
[outlet]
type = ADDirichletBC
variable = pressure
boundary = right
value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
[]
[]
[Executioner]
type = Steady # Steady state problem
solve_type = NEWTON # Perform a Newton solve
# Set PETSc parameters to optimize solver efficiency
petsc_options_iname = '-pc_type -pc_hypre_type' # PETSc option pairs with values below
petsc_options_value = ' hypre boomeramg'
[]
[Outputs]
exodus = true # Output Exodus format
[]
(tutorials/tutorial01_app_development/step10_auxkernels/problems/pressure_diffusion.i)
[Mesh]
type = GeneratedMesh # Can generate simple lines, rectangles and rectangular prisms
dim = 2 # Dimension of the mesh
nx = 100 # Number of elements in the x direction
ny = 10 # Number of elements in the y direction
xmax = 0.304 # Length of test chamber
ymax = 0.0257 # Test chamber radius
rz_coord_axis = X # Which axis the symmetry is around
coord_type = RZ # Axisymmetric RZ
[]
[Problem]
type = FEProblem # This is the "normal" type of Finite Element Problem in MOOSE
[]
[Variables]
[pressure]
# Adds a Linear Lagrange variable by default
[]
[]
[AuxVariables]
[velocity]
order = CONSTANT # Since "pressure" is approximated linearly, its gradient must be constant
family = MONOMIAL_VEC # A monomial interpolation means this is an elemental AuxVariable
[]
[]
[Kernels]
[diffusion]
type = DarcyPressure # Zero-gravity, divergence-free form of Darcy's law
variable = pressure # Operate on the "pressure" variable from above
[]
[]
[AuxKernels]
[velocity]
type = DarcyVelocity
variable = velocity # Store volumetric flux vector in "velocity" variable from above
pressure = pressure # Couple to the "pressure" variable from above
execute_on = TIMESTEP_END # Perform calculation at the end of the solve step - after Kernels run
[]
[]
[Materials]
[filter]
type = PackedColumn # Provides permeability and viscosity of water through packed 1mm spheres
[]
[]
[BCs]
[inlet]
type = ADDirichletBC # Simple u=value BC
variable = pressure # Variable to be set
boundary = left # Name of a sideset in the mesh
value = 4000 # (Pa) From Figure 2 from paper. First data point for 1mm spheres.
[]
[outlet]
type = ADDirichletBC
variable = pressure
boundary = right
value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
[]
[]
[Executioner]
type = Steady # Steady state problem
solve_type = NEWTON # Perform a Newton solve
# Set PETSc parameters to optimize solver efficiency
petsc_options_iname = '-pc_type -pc_hypre_type' # PETSc option pairs with values below
petsc_options_value = ' hypre boomeramg'
[]
[Outputs]
exodus = true # Output Exodus format
[]
(modules/phase_field/test/tests/boundary_intersecting_features/boundary_intersecting_features.i)
[Mesh]
# ImageMesh ignores nx, xmin, xmax (and similarly for y and z) and
# tries to read them from the image file...
type = ImageMesh
dim = 2
# Be sure to choose a corresponding image name below!
# file = image001_cropped3_closing_298.png # full size, 157 Mb Exodus file!
# file = eighth_image001_cropped3_closing_298.png # 1/8
file = sixteenth_image001_cropped3_closing_298.png # 1/16
# Uncomment to maintain 1:1 ratio between number of pixels and mesh size.
# scale_to_one = false
# Uncomment to set cells_per_pixel to something other than the default value of 1.0.
# Must be <= 1.
# cells_per_pixel = .75
# To crop an image to e.g. 1/8th size, install ImageMagick and run:
# convert image001_cropped3_closing_298.png -crop 230x198+100+100 eighth_image001_cropped3_closing_298.png
# Note: Do not use 'sips' on OSX to crop! It actually interpolates
# the colors in the image instead of just cropping.
[]
[Variables]
[./u]
order = CONSTANT
family = MONOMIAL
[../]
[]
[AuxVariables]
[./grain_auxvar]
order = CONSTANT
family = MONOMIAL
[../]
[./centroids]
order = CONSTANT
family = MONOMIAL
[../]
[]
[AuxKernels]
[./nodal_flood_aux]
variable = grain_auxvar
type = FeatureFloodCountAux
flood_counter = flood_count_pp
execute_on = 'initial timestep_end'
[../]
[./centroids]
type = FeatureFloodCountAux
variable = centroids
flood_counter = flood_count_pp
field_display = CENTROID
execute_on = 'initial timestep_end'
[../]
[]
[Functions]
[./tif]
# ImageFunction gets its file range parameters from ImageMesh,
# when it is present. This prevents duplicating information in
# input files.
type = ImageFunction
# In these sample images the features we want to analyze are RED (or close to pure red). The
# background is BLUE so we can easily distinguish between the two by selecting only the red channel.
component = 0
[../]
[]
[ICs]
[./u_ic]
type = FunctionIC
function = tif
variable = u
[../]
[]
[Postprocessors]
[./flood_count_pp]
type = FeatureFloodCount
variable = u
threshold = 1.0
compute_var_to_feature_map = true
execute_on = 'initial timestep_end'
[../]
[]
[VectorPostprocessors]
[./grain_volumes]
type = FeatureVolumeVectorPostprocessor
flood_counter = flood_count_pp
execute_on = 'initial timestep_end'
[../]
[]
[Problem]
type = FEProblem
solve = false
[../]
[Executioner]
type = Steady
[]
[Outputs]
csv = true
[]
(test/tests/functions/image_function/crop.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
uniform_refine = 2
xmin = 0.5
ymin = 0.5
[]
[Variables]
[u]
[]
[]
[Functions]
[image_func]
type = ImageFunction
file_base = stack/test
file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
file_suffix = png
origin = '0 0 0'
dimensions = '1 1 0'
[]
[]
[ICs]
[u_ic]
type = FunctionIC
function = image_func
variable = u
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 1
dt = 0.1
[]
[Outputs]
exodus = true
[]
(test/tests/restart/restartable_types/restartable_types.i)
###########################################################
# This is a simple test of the restart/recover capability.
# The test object "RestartableTypesChecker" is used
# to reload data from a previous simulation written out
# with the object "RestartableTypes".
#
# See "restartable_types2.i"
#
# @Requirement F1.60
###########################################################
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = left
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = right
value = 1
[../]
[]
[UserObjects]
[./restartable_types]
type = RestartableTypes
[../]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
[./out]
type = Checkpoint
num_files = 1
[../]
[]
(test/tests/fvkernels/fv_simple_diffusion/unstructured-rz.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 20
ny = 20
elem_type = TRI3
coord_type = RZ
[]
[Variables]
[v]
family = MONOMIAL
order = CONSTANT
fv = true
[]
[]
[FVKernels]
[diff]
type = FVDiffusion
variable = v
coeff = coeff
[]
[]
[Materials]
[diff]
type = ADGenericFunctorMaterial
prop_names = 'coeff'
prop_values = '1'
[]
[]
[FVBCs]
[right]
type = FVDirichletBC
boundary = right
value = 1
variable = v
[]
[]
[Problem]
type = FEProblem
[]
[Executioner]
type = Steady
solve_type = 'NEWTON'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
residual_and_jacobian_together = true
[]
[Outputs]
exodus = true
[]
(test/tests/materials/generic_materials/ad_generic_constant_symmetric_rank_two_tensor.i)
[Mesh]
type = GeneratedMesh
dim = 1
[]
[Problem]
type = FEProblem
solve = false
[]
[Materials]
[tensor]
type = ADGenericConstantSymmetricRankTwoTensor
tensor_name = constant
tensor_values = '1 2 3 4 5 6' # Note mandel factor kicks in for the off-diagonal entries
outputs = all
[]
[]
[Executioner]
type = Transient
num_steps = 1
[]
[Postprocessors]
[0]
type = ElementAverageValue
variable = constant_0
[]
[1]
type = ElementAverageValue
variable = constant_1
[]
[2]
type = ElementAverageValue
variable = constant_2
[]
[3]
type = ElementAverageValue
variable = constant_3
[]
[4]
type = ElementAverageValue
variable = constant_4
[]
[5]
type = ElementAverageValue
variable = constant_5
[]
[]
[Outputs]
csv = true
[]
(modules/contact/test/tests/verification/patch_tests/cyl_2/cyl2_template1.i)
#
# This input file is a template for both the frictionless and glued test
# variations for the current problem geometry. In order to create an input
# file to run outside the runtest framework, look at the tests file and add the
# appropriate input file lines from the cli_args line.
#
[GlobalParams]
volumetric_locking_correction = true
displacements = 'disp_x disp_y'
[]
[Mesh]
file = cyl2_mesh.e
coord_type = RZ
[]
[Problem]
type = FEProblem
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[]
[AuxVariables]
[./stress_xx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zz]
order = CONSTANT
family = MONOMIAL
[../]
[./penetration]
[../]
[./saved_x]
[../]
[./saved_y]
[../]
[./diag_saved_x]
[../]
[./diag_saved_y]
[../]
[./inc_slip_x]
[../]
[./inc_slip_y]
[../]
[./accum_slip_x]
[../]
[./accum_slip_y]
[../]
[./tang_force_x]
[../]
[./tang_force_y]
[../]
[]
[Kernels]
[./TensorMechanics]
use_displaced_mesh = true
save_in = 'saved_x saved_y'
[../]
[]
[AuxKernels]
[./stress_xx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xx
index_i = 0
index_j = 0
execute_on = timestep_end
[../]
[./stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
execute_on = timestep_end
[../]
[./stress_xy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xy
index_i = 0
index_j = 1
execute_on = timestep_end
[../]
[./stress_zz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zz
index_i = 2
index_j = 2
execute_on = timestep_end
[../]
[./inc_slip_x]
type = PenetrationAux
variable = inc_slip_x
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./inc_slip_y]
type = PenetrationAux
variable = inc_slip_y
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./accum_slip_x]
type = PenetrationAux
variable = accum_slip_x
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./accum_slip_y]
type = PenetrationAux
variable = accum_slip_y
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./penetration]
type = PenetrationAux
variable = penetration
boundary = 3
paired_boundary = 4
[../]
[./tang_force_x]
type = PenetrationAux
variable = tang_force_x
quantity = tangential_force_x
boundary = 3
paired_boundary = 4
[../]
[./tang_force_y]
type = PenetrationAux
variable = tang_force_y
quantity = tangential_force_y
boundary = 3
paired_boundary = 4
[../]
[] # AuxKernels
[Postprocessors]
[./bot_react_x]
type = NodalSum
variable = saved_x
boundary = 1
[../]
[./bot_react_y]
type = NodalSum
variable = saved_y
boundary = 1
[../]
[./top_react_x]
type = NodalSum
variable = saved_x
boundary = 5
[../]
[./top_react_y]
type = NodalSum
variable = saved_y
boundary = 5
[../]
[./ref_resid_x]
type = NodalL2Norm
execute_on = timestep_end
variable = saved_x
[../]
[./ref_resid_y]
type = NodalL2Norm
execute_on = timestep_end
variable = saved_y
[../]
[./sigma_yy]
type = ElementAverageValue
variable = stress_yy
[../]
[./sigma_zz]
type = ElementAverageValue
variable = stress_zz
[../]
[./disp_x5]
type = NodalVariableValue
nodeid = 4
variable = disp_x
[../]
[./disp_x9]
type = NodalVariableValue
nodeid = 8
variable = disp_x
[../]
[./disp_y5]
type = NodalVariableValue
nodeid = 4
variable = disp_y
[../]
[./disp_y9]
type = NodalVariableValue
nodeid = 8
variable = disp_y
[../]
[./_dt]
type = TimestepSize
[../]
[./num_lin_it]
type = NumLinearIterations
[../]
[./num_nonlin_it]
type = NumNonlinearIterations
[../]
[]
[BCs]
[./bot_y]
type = DirichletBC
variable = disp_y
boundary = 1
value = 0.0
[../]
[./side_x]
type = DirichletBC
variable = disp_x
boundary = 2
value = 0.0
[../]
[./top_press]
type = Pressure
variable = disp_y
boundary = 5
factor = 109.89
[../]
[]
[Materials]
[./bot_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '1'
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./bot_strain]
type = ComputeAxisymmetricRZIncrementalStrain
block = '1'
[../]
[./bot_stress]
type = ComputeFiniteStrainElasticStress
block = '1'
[../]
[./top_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '2'
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./top_strain]
type = ComputeAxisymmetricRZIncrementalStrain
block = '2'
[../]
[./top_stress]
type = ComputeFiniteStrainElasticStress
block = '2'
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_factor_mat_solver_type'
petsc_options_value = 'lu superlu_dist'
line_search = 'none'
nl_abs_tol = 1e-7
nl_rel_tol = 1e-6
l_max_its = 100
nl_max_its = 1000
dt = 1.0
end_time = 1.0
num_steps = 10
dtmin = 1.0
l_tol = 1e-4
[]
[VectorPostprocessors]
[./x_disp]
type = NodalValueSampler
variable = disp_x
boundary = '1 3 4 5'
sort_by = x
[../]
[./cont_press]
type = NodalValueSampler
variable = contact_pressure
boundary = '3'
sort_by = x
[../]
[]
[Outputs]
print_linear_residuals = true
perf_graph = true
[./exodus]
type = Exodus
elemental_as_nodal = true
[../]
[./console]
type = Console
max_rows = 5
[../]
[./chkfile]
type = CSV
show = 'bot_react_x bot_react_y disp_x5 disp_y5 disp_x9 disp_y9 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
execute_vector_postprocessors_on = timestep_end
[../]
[./outfile]
type = CSV
delimiter = ' '
execute_vector_postprocessors_on = none
[../]
[]
[Contact]
[./leftright]
secondary = 3
primary = 4
normalize_penalty = true
tangential_tolerance = 1e-3
penalty = 1e+9
[../]
[]
(test/tests/transfers/multiapp_copy_transfer/between_multiapps/sub1.i)
[Problem]
type = FEProblem
solve = false
[]
[Mesh]
type = GeneratedMesh
dim = 2
[]
[AuxVariables/x1]
initial_condition = 10
[]
[Executioner]
type = Transient
[]
[Outputs]
execute_on = 'FINAL'
exodus = true
[]
(modules/contact/test/tests/verification/patch_tests/cyl_2/cyl2_mu_0_2_pen.i)
[GlobalParams]
volumetric_locking_correction = true
displacements = 'disp_x disp_y'
[]
[Mesh]
file = cyl2_mesh.e
coord_type = RZ
[]
[Problem]
type = FEProblem
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[]
[AuxVariables]
[./stress_xx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zz]
order = CONSTANT
family = MONOMIAL
[../]
[./penetration]
[../]
[./saved_x]
[../]
[./saved_y]
[../]
[./diag_saved_x]
[../]
[./diag_saved_y]
[../]
[./inc_slip_x]
[../]
[./inc_slip_y]
[../]
[./accum_slip_x]
[../]
[./accum_slip_y]
[../]
[./tang_force_x]
[../]
[./tang_force_y]
[../]
[]
[Kernels]
[./TensorMechanics]
use_displaced_mesh = true
save_in = 'saved_x saved_y'
[../]
[]
[AuxKernels]
[./stress_xx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xx
index_i = 0
index_j = 0
execute_on = timestep_end
[../]
[./stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
execute_on = timestep_end
[../]
[./stress_xy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xy
index_i = 0
index_j = 1
execute_on = timestep_end
[../]
[./stress_zz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zz
index_i = 2
index_j = 2
execute_on = timestep_end
[../]
[./inc_slip_x]
type = PenetrationAux
variable = inc_slip_x
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./inc_slip_y]
type = PenetrationAux
variable = inc_slip_y
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./accum_slip_x]
type = PenetrationAux
variable = accum_slip_x
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./accum_slip_y]
type = PenetrationAux
variable = accum_slip_y
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./penetration]
type = PenetrationAux
variable = penetration
boundary = 3
paired_boundary = 4
[../]
[./tang_force_x]
type = PenetrationAux
variable = tang_force_x
quantity = tangential_force_x
boundary = 3
paired_boundary = 4
[../]
[./tang_force_y]
type = PenetrationAux
variable = tang_force_y
quantity = tangential_force_y
boundary = 3
paired_boundary = 4
[../]
[] # AuxKernels
[Postprocessors]
[./bot_react_x]
type = NodalSum
variable = saved_x
boundary = 1
[../]
[./bot_react_y]
type = NodalSum
variable = saved_y
boundary = 1
[../]
[./top_react_x]
type = NodalSum
variable = saved_x
boundary = 5
[../]
[./top_react_y]
type = NodalSum
variable = saved_y
boundary = 5
[../]
[./ref_resid_x]
type = NodalL2Norm
execute_on = timestep_end
variable = saved_x
[../]
[./ref_resid_y]
type = NodalL2Norm
execute_on = timestep_end
variable = saved_y
[../]
[./sigma_yy]
type = ElementAverageValue
variable = stress_yy
[../]
[./sigma_zz]
type = ElementAverageValue
variable = stress_zz
[../]
[./disp_x5]
type = NodalVariableValue
nodeid = 4
variable = disp_x
[../]
[./disp_x9]
type = NodalVariableValue
nodeid = 8
variable = disp_x
[../]
[./disp_y5]
type = NodalVariableValue
nodeid = 4
variable = disp_y
[../]
[./disp_y9]
type = NodalVariableValue
nodeid = 8
variable = disp_y
[../]
[./_dt]
type = TimestepSize
[../]
[./num_lin_it]
type = NumLinearIterations
[../]
[./num_nonlin_it]
type = NumNonlinearIterations
[../]
[]
[BCs]
[./bot_y]
type = DirichletBC
variable = disp_y
boundary = 1
value = 0.0
[../]
[./side_x]
type = DirichletBC
variable = disp_x
boundary = 2
value = 0.0
[../]
[./top_press]
type = Pressure
variable = disp_y
boundary = 5
factor = 109.89
[../]
[]
[Materials]
[./bot_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '1'
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./bot_strain]
type = ComputeAxisymmetricRZIncrementalStrain
block = '1'
[../]
[./bot_stress]
type = ComputeFiniteStrainElasticStress
block = '1'
[../]
[./top_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '2'
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./top_strain]
type = ComputeAxisymmetricRZIncrementalStrain
block = '2'
[../]
[./top_stress]
type = ComputeFiniteStrainElasticStress
block = '2'
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_factor_mat_solver_type'
petsc_options_value = 'lu superlu_dist'
line_search = 'none'
nl_abs_tol = 1e-7
nl_rel_tol = 1e-6
l_max_its = 50
nl_max_its = 100
dt = 1.0
end_time = 1.0
num_steps = 10
dtmin = 1.0
l_tol = 1e-4
[]
[VectorPostprocessors]
[./x_disp]
type = NodalValueSampler
variable = disp_x
boundary = '1 3 4 5'
sort_by = x
[../]
[./cont_press]
type = NodalValueSampler
variable = contact_pressure
boundary = '3'
sort_by = x
[../]
[]
[Outputs]
file_base = cyl2_mu_0_2_pen_out
print_linear_residuals = true
perf_graph = true
[./exodus]
type = Exodus
elemental_as_nodal = true
[../]
[./console]
type = Console
max_rows = 5
[../]
[./chkfile]
type = CSV
file_base = cyl2_mu_0_2_pen_check
show = 'bot_react_x bot_react_y disp_x5 disp_y5 disp_x9 disp_y9 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
execute_vector_postprocessors_on = timestep_end
[../]
[./outfile]
type = CSV
delimiter = ' '
execute_vector_postprocessors_on = none
[../]
[]
[Contact]
[./leftright]
secondary = 3
primary = 4
model = coulomb
formulation = penalty
normalize_penalty = true
tangential_tolerance = 1e-3
friction_coefficient = 0.2
penalty = 1e+9
[../]
[]
(test/tests/misc/solution_invalid/solution_invalid.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 2
ny = 2
xmax = 1
ymax = 1
[]
[Variables]
[u]
[]
[]
# Sets solution invalid using the SolutionInvalidInterface, as diffusivity exceeds the set threshold.
[Materials]
[filter]
type = NonsafeMaterial
diffusivity = 0.5
threshold = 0.3
[]
[]
[Kernels]
[diffusion]
type = MatDiffusion
variable = u
diffusivity = diffusivity
[]
[]
[BCs]
[left]
type = DirichletBC
variable = u
boundary = left
value = 1
[]
[right]
type = DirichletBC
variable = u
boundary = right
value = 0
[]
[]
[Problem]
type = FEProblem
allow_invalid_solution = false
immediately_print_invalid_solution = false
[]
[Executioner]
type = Steady
solve_type = 'NEWTON'
petsc_options_iname = '-pc_type -pc_factor_mat_solver_type'
petsc_options_value = 'lu superlu_dist'
[]
[Reporters]
[solution_invalidity]
type = SolutionInvalidityReporter
execute_on = FINAL
[]
[]
[Outputs]
file_base = 'solution_invalid'
[out]
type = JSON
execute_on = 'FINAL'
execute_system_information_on = none
[]
[]
(test/tests/geomsearch/patch_update_strategy/auto.i)
[Mesh]
type = FileMesh
file = long_range.e
dim = 2
patch_update_strategy = auto
displacements = 'disp_x disp_y'
[]
[Variables]
[./u]
block = right
[../]
[]
[AuxVariables]
[./linear_field]
[../]
[./receiver]
# The field to transfer into
[../]
[./disp_x]
[../]
[./disp_y]
[../]
[./elemental_reciever]
order = CONSTANT
family = MONOMIAL
[../]
[]
[Kernels]
[./diff]
type = CoefDiffusion
variable = u
coef = 1
[../]
[./time]
type = TimeDerivative
variable = u
[../]
[]
[AuxKernels]
[./linear_in_y]
# This just gives us something to transfer that varies in y so we can ensure the transfer is working properly...
type = FunctionAux
variable = linear_field
function = y
execute_on = initial
[../]
[./right_to_left]
type = GapValueAux
variable = receiver
paired_variable = linear_field
paired_boundary = rightleft
execute_on = timestep_end
boundary = leftright
[../]
[./y_displacement]
type = FunctionAux
variable = disp_y
function = t
execute_on = 'linear timestep_begin'
block = left
[../]
[./elemental_right_to_left]
type = GapValueAux
variable = elemental_reciever
paired_variable = linear_field
paired_boundary = rightleft
boundary = leftright
[../]
[]
[BCs]
[./top]
type = DirichletBC
variable = u
boundary = righttop
value = 1
[../]
[./bottom]
type = DirichletBC
variable = u
boundary = rightbottom
value = 0
[../]
[]
[Problem]
type = FEProblem
kernel_coverage_check = false
[]
[Executioner]
type = Transient
num_steps = 30
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(modules/phase_field/test/tests/initial_conditions/ClosePackIC_3D.i)
[Mesh]
type = GeneratedMesh
dim = 3
nx = 5
ny = 5
nz = 5
xmax = 0.5
ymax = .5
zmax = 0.5
uniform_refine = 3
[]
[Variables]
[./u]
[../]
[]
[AuxVariables]
[./phi]
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = left
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = right
value = 1
[../]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
execute_on = 'timestep_end'
exodus = true
[]
[ICs]
[./close_pack]
radius = 0.1
outvalue = 0
variable = phi
invalue = 1
type = ClosePackIC
[../]
[]
(modules/solid_mechanics/test/tests/crack_loop/crack_loop.i)
[Mesh]
file = crack_loop.e
[]
[Problem]
type = FEProblem
solve = false
[]
[UserObjects]
[./crack]
type = CrackFrontDefinition
crack_direction_method = CurvedCrackFront
boundary = 1001
[../]
[]
[Executioner]
type = Steady
[]
(test/tests/misc/block_boundary_material_check/bc_check.i)
[Mesh]
type = GeneratedMesh
dim = 1
[]
[Variables]
[./u]
[../]
[]
[BCs]
[./bc_left]
type = MatTestNeumannBC
variable = u
boundary = left
mat_prop = 'prop'
[../]
[]
[Problem]
type = FEProblem
solve = false
kernel_coverage_check = false
[]
[Executioner]
type = Steady
[]
(test/tests/transfers/multiapp_userobject_transfer/sub.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 4
ny = 8
xmax = 0.1
ymax = 0.5
coord_type = rz
[]
[Variables]
[./u]
initial_condition = 1
[../]
[]
[AuxVariables]
[./layered_average_value]
order = CONSTANT
family = MONOMIAL
[../]
[]
[Functions]
[./axial_force]
type = ParsedFunction
expression = 1000*y
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[./td]
type = TimeDerivative
variable = u
[../]
[./force]
type = BodyForce
variable = u
function = axial_force
[../]
[]
[AuxKernels]
[./layered_aux]
type = SpatialUserObjectAux
variable = layered_average_value
execute_on = timestep_end
user_object = layered_average
[../]
[]
[BCs]
[./right]
type = DirichletBC
variable = u
boundary = right
value = 1
[../]
[]
[UserObjects]
[./layered_average]
type = LayeredAverage
variable = u
direction = y
num_layers = 4
[../]
[]
[Executioner]
type = Transient
num_steps = 1
dt = 0.001
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
[Problem]
type = FEProblem
[]
(tutorials/darcy_thermo_mech/step06_coupled_darcy_heat_conduction/tests/materials/packed_column/packed_column.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 100
ny = 10
xmax = 0.304 # Length of test chamber
ymax = 0.0257 # Test chamber radius
[]
coord_type = RZ
rz_coord_axis = X
[]
[Variables]
[pressure]
[]
[]
[Kernels]
[darcy_pressure]
type = DarcyPressure
variable = pressure
[]
[]
[BCs]
[inlet]
type = DirichletBC
variable = pressure
boundary = left
value = 4000 # (Pa) From Figure 2 from paper. First dot for 1mm spheres.
[]
[outlet]
type = DirichletBC
variable = pressure
boundary = right
value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
[]
[]
[Materials]
[column]
type = PackedColumn
temperature = 303
[]
[]
[Problem]
type = FEProblem
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(test/tests/misc/check_error/uo_vector_pps_name_collision_test.i)
[Mesh]
type = GeneratedMesh
dim = 1
xmin = 0
xmax = 1
nx = 5
[]
[UserObjects]
[ud]
type = MTUserObject
scalar = 2
vector = '9 7 5'
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
[]
[VectorPostprocessors]
[ud]
type = ConstantVectorPostprocessor
value = 1
[]
[]
(test/tests/functions/image_function/error/threshold_values.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 20
ny = 20
[]
[Variables]
[u]
[]
[]
[Functions]
[tif]
type = ImageFunction
file_base = ../stack/test
file_suffix = png
file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
threshold = 30000
upper_value = 1
[]
[]
[ICs]
[u_ic]
type = FunctionIC
function = tif
variable = u
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 1
dt = 0.1
[]
(test/tests/auxkernels/element_adaptivity_level_aux/element_hierarchy_test.i)
[Mesh]
[generate_mesh]
type = GeneratedMeshGenerator
dim = 2
xmin = 0
xmax = 10
ymin = 0
ymax = 10
nx = 5
ny = 5
[]
[]
[AuxVariables]
[in_mesh]
order = CONSTANT
family = MONOMIAL
[]
[hierarchy]
order = CONSTANT
family = MONOMIAL
[]
[]
[AuxKernels]
[hierarchy_aux_kernel]
type=ElementAdaptivityLevelAux
level='h'
variable=hierarchy
[]
[fill_up_data]
type = FunctionAux
variable = in_mesh
function = "3*x*y+sin(x*y)-12*x*x"
execute_on = 'TIMESTEP_BEGIN'
[]
[]
[Adaptivity]
marker = error_fraction
steps = 1
[Indicators]
[error]
type = ValueJumpIndicator
variable = in_mesh
[]
[]
[Markers]
[error_fraction]
type = ErrorFractionMarker
indicator = error
refine = 0.2
coarsen = 0.1
[]
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
dt = 1
num_steps = 1
[]
[Outputs]
exodus = true
[]
(test/tests/transfers/multiapp_copy_transfer/multivariable_copy/parent.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
[]
[Variables]
# Create two variables
[./u]
[../]
[./v]
[../]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 1
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[MultiApps]
[./sub]
type = FullSolveMultiApp
input_files = sub.i
execute_on = initial
[../]
[]
[Transfers]
# Transfer both variables by inputting a vector of their names
[./from_sub]
type = MultiAppCopyTransfer
source_variable = 'u v'
variable = 'u v'
from_multi_app = sub
[../]
[]
[Outputs]
exodus = true
[]
(test/tests/auxkernels/vector_function_aux/vector_function_aux.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 2
ny = 2
[]
[AuxVariables]
[vec]
family = LAGRANGE_VEC
order = FIRST
[]
[]
[Variables]
[u][]
[]
[Functions]
[function]
type = ParsedVectorFunction
expression_x = t*x
expression_y = t*y
[]
[]
[AuxKernels]
[vec]
type = VectorFunctionAux
variable = vec
function = function
execute_on = 'INITIAL TIMESTEP_END'
[../]
[]
[Problem]
type = FEProblem
#solve = false
kernel_coverage_check = false
[]
[Executioner]
type = Transient
start_time = 0.0
num_steps = 5
dt = 1
[]
[Outputs]
exodus = true
[]
(modules/contact/test/tests/verification/patch_tests/cyl_4/cyl4_mu_0_2_pen.i)
[GlobalParams]
order = SECOND
displacements = 'disp_x disp_y'
[]
[Mesh]
file = cyl4_mesh.e
coord_type = RZ
[]
[Problem]
type = FEProblem
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[]
[AuxVariables]
[./stress_xx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zz]
order = CONSTANT
family = MONOMIAL
[../]
[./penetration]
[../]
[./saved_x]
[../]
[./saved_y]
[../]
[./diag_saved_x]
[../]
[./diag_saved_y]
[../]
[./inc_slip_x]
[../]
[./inc_slip_y]
[../]
[./accum_slip_x]
[../]
[./accum_slip_y]
[../]
[./tang_force_x]
[../]
[./tang_force_y]
[../]
[]
[Kernels]
[./TensorMechanics]
use_displaced_mesh = true
save_in = 'saved_x saved_y'
[../]
[]
[AuxKernels]
[./stress_xx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xx
index_i = 0
index_j = 0
execute_on = timestep_end
[../]
[./stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
execute_on = timestep_end
[../]
[./stress_xy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xy
index_i = 0
index_j = 1
execute_on = timestep_end
[../]
[./stress_zz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zz
index_i = 2
index_j = 2
execute_on = timestep_end
[../]
[./inc_slip_x]
type = PenetrationAux
variable = inc_slip_x
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./inc_slip_y]
type = PenetrationAux
variable = inc_slip_y
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./accum_slip_x]
type = PenetrationAux
variable = accum_slip_x
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./accum_slip_y]
type = PenetrationAux
variable = accum_slip_y
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./penetration]
type = PenetrationAux
variable = penetration
boundary = 3
paired_boundary = 4
[../]
[./tang_force_x]
type = PenetrationAux
variable = tang_force_x
quantity = tangential_force_x
boundary = 3
paired_boundary = 4
[../]
[./tang_force_y]
type = PenetrationAux
variable = tang_force_y
quantity = tangential_force_y
boundary = 3
paired_boundary = 4
[../]
[] # AuxKernels
[Postprocessors]
[./bot_react_x]
type = NodalSum
variable = saved_x
boundary = 1
[../]
[./bot_react_y]
type = NodalSum
variable = saved_y
boundary = 1
[../]
[./top_react_x]
type = NodalSum
variable = saved_x
boundary = 5
[../]
[./top_react_y]
type = NodalSum
variable = saved_y
boundary = 5
[../]
[./ref_resid_x]
type = NodalL2Norm
execute_on = timestep_end
variable = saved_x
[../]
[./ref_resid_y]
type = NodalL2Norm
execute_on = timestep_end
variable = saved_y
[../]
[./stress_yy]
type = ElementAverageValue
variable = stress_yy
[../]
[./stress_zz]
type = ElementAverageValue
variable = stress_zz
[../]
[./disp_x16]
type = NodalVariableValue
nodeid = 15
variable = disp_x
[../]
[./disp_x9]
type = NodalVariableValue
nodeid = 8
variable = disp_x
[../]
[./disp_y16]
type = NodalVariableValue
nodeid = 15
variable = disp_y
[../]
[./disp_y9]
type = NodalVariableValue
nodeid = 8
variable = disp_y
[../]
[./_dt]
type = TimestepSize
[../]
[./num_lin_it]
type = NumLinearIterations
[../]
[./num_nonlin_it]
type = NumNonlinearIterations
[../]
[]
[BCs]
[./bot_y]
type = DirichletBC
variable = disp_y
boundary = 1
value = 0.0
[../]
[./side_x]
type = DirichletBC
variable = disp_x
boundary = 2
value = 0.0
[../]
[./top_press]
type = Pressure
variable = disp_y
boundary = 5
factor = 109.89
[../]
[]
[Materials]
[./bot_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '1'
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./bot_strain]
type = ComputeAxisymmetricRZIncrementalStrain
block = '1'
[../]
[./bot_stress]
type = ComputeFiniteStrainElasticStress
block = '1'
[../]
[./top_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '2'
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./top_strain]
type = ComputeAxisymmetricRZIncrementalStrain
block = '2'
[../]
[./top_stress]
type = ComputeFiniteStrainElasticStress
block = '2'
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_factor_mat_solver_type'
petsc_options_value = 'lu superlu_dist'
line_search = 'none'
nl_abs_tol = 1e-7
nl_rel_tol = 1e-6
l_max_its = 100
nl_max_its = 1000
dt = 1.0
end_time = 1.0
num_steps = 10
dtmin = 1.0
l_tol = 1e-4
[]
[VectorPostprocessors]
[./x_disp]
type = NodalValueSampler
variable = disp_x
boundary = '1 3 4 5'
sort_by = x
[../]
[./cont_press]
type = NodalValueSampler
variable = contact_pressure
boundary = '3'
sort_by = x
[../]
[]
[Outputs]
file_base = cyl4_mu_0_2_pen_out
print_linear_residuals = true
perf_graph = true
[./exodus]
type = Exodus
elemental_as_nodal = true
[../]
[./console]
type = Console
max_rows = 5
[../]
[./chkfile]
type = CSV
file_base = cyl4_mu_0_2_pen_check
show = 'bot_react_x bot_react_y disp_x9 disp_y9 disp_x16 disp_y16 stress_yy stress_zz top_react_x top_react_y x_disp cont_press'
execute_vector_postprocessors_on = timestep_end
[../]
[./outfile]
type = CSV
delimiter = ' '
execute_vector_postprocessors_on = none
[../]
[]
[Contact]
[./leftright]
secondary = 3
primary = 4
model = coulomb
formulation = penalty
normalize_penalty = true
friction_coefficient = 0.2
tangential_tolerance = 1e-3
penalty = 1e+9
[../]
[]
(test/tests/meshgenerators/image_mesh_generator/image_3d.i)
[Mesh]
[gen]
type = GeneratedMeshGenerator
dim = 3
nx = 20
ny = 20
nz = 20
[]
[image]
type = ImageSubdomainGenerator
input = gen
file_base = stack/test
file_suffix = png
threshold = 6e4
[]
[]
[Variables]
[u]
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
[]
[Outputs]
execute_on = 'timestep_end'
exodus = true
[]
(test/tests/misc/solution_invalid/solution_invalid_timehistory.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 2
ny = 2
xmax = 1
ymax = 1
[]
[Variables]
[u]
[]
[]
# Sets solution invalid using the SolutionInvalidInterface, as diffusivity exceeds the set threshold.
[Materials]
[filter]
type = NonsafeMaterial
diffusivity = 0.5
threshold = 0.3
flag_solution_warning = true
[]
[]
[Kernels]
[du_dt]
type = TimeDerivative
variable = u
[]
[diffusion]
type = MatDiffusion
variable = u
diffusivity = diffusivity
[]
[]
[BCs]
[left]
type = DirichletBC
variable = u
boundary = left
value = 1
[]
[right]
type = DirichletBC
variable = u
boundary = right
value = 0
[]
[]
[Problem]
type = FEProblem
allow_invalid_solution = false
immediately_print_invalid_solution = false
[]
[Executioner]
type = Transient
num_steps = 6
error_on_dtmin = false
solve_type = 'NEWTON'
petsc_options_iname = '-pc_type -pc_factor_mat_solver_type'
petsc_options_value = 'lu superlu_dist'
[]
[Reporters]
[solution_invalidity]
type = SolutionInvalidityReporter
execute_on = FINAL
[]
[]
[Outputs]
file_base = 'solution_invalid'
[out]
type = JSON
execute_on = 'FINAL'
execute_system_information_on = none
[]
[]
(test/tests/preconditioners/fsp/fsp_test_image.i)
[Mesh]
[gen]
type = GeneratedMeshGenerator
dim = 2
nx = 41
ny = 41
[]
[./image]
input = gen
type = ImageSubdomainGenerator
file = kitten.png
threshold = 100
[../]
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
block = 1
[../]
[./v]
order = FIRST
family = LAGRANGE
block = 1
[../]
[]
[Kernels]
[./diff_u]
type = Diffusion
variable = u
[../]
[./conv_v]
type = CoupledForce
variable = v
v = u
[../]
[./diff_v]
type = Diffusion
variable = v
[../]
[]
[BCs]
active = 'left_u left_v right_u'
[./left_u]
type = DirichletBC
variable = u
boundary = left
value = 0
[../]
[./right_u]
type = DirichletBC
variable = u
boundary = right
value = 100
[../]
[./left_v]
type = DirichletBC
variable = v
boundary = left
value = 0
[../]
[./right_v]
type = DirichletBC
variable = v
boundary = right
value = 0
[../]
[]
[Problem]
type = FEProblem
material_coverage_check = false
kernel_coverage_check = false
[]
[Executioner]
# This is setup automatically in MOOSE (SetupPBPAction.C)
# petsc_options = '-snes_mf_operator'
# petsc_options_iname = '-pc_type'
# petsc_options_value = 'asm'
type = Steady
[]
[Preconditioning]
[./FSP]
# It is the starting point of splitting
type = FSP
topsplit = 'uv' # 'uv'
[./uv]
# Generally speaking, there are four types of splitting we could choose
# <additive,multiplicative,symmetric_multiplicative,schur>
# An approximate solution to the original system
# | A_uu A_uv | | u | _ |f_u|
# | 0 A_vv | | v | - |f_v|
# is obtained by solving the following subsystems
# A_uu u = f_u and A_vv v = f_v
# If splitting type is specified as schur, we may also want to set more options to
# control how schur works using PETSc options
# petsc_options_iname = '-pc_fieldsplit_schur_fact_type -pc_fieldsplit_schur_precondition'
# petsc_options_value = 'full selfp'
splitting = 'u v' # 'u' and 'v'
splitting_type = additive
[../]
[./u]
# PETSc options for this subsolver
# A prefix will be applied, so just put the options for this subsolver only
vars = u
petsc_options_iname = '-pc_type -ksp_type'
petsc_options_value = ' hypre preonly'
[../]
[./v]
# PETSc options for this subsolver
vars = v
petsc_options_iname = '-pc_type -ksp_type'
petsc_options_value = ' hypre preonly'
[../]
[../]
[]
[Outputs]
file_base = kitten_out
exodus = true
[]
(test/tests/functions/image_function/flip_dual.i)
[Mesh]
uniform_refine = 1
[gen]
type = GeneratedMeshGenerator
dim = 2
nx = 20
ny = 40
ymax = 2
[]
[top]
type = SubdomainBoundingBoxGenerator
input = gen
top_right = '1 2 0'
bottom_left = '0 1 0'
block_id = 1
[]
[]
[Variables]
[u]
[]
[]
[Functions]
[top]
type = ImageFunction
origin = '0 1 0'
file_base = stack/test
file_suffix = png
flip_y = true
file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
dimensions = '1 1 0'
[]
[bottom]
type = ImageFunction
origin = '0 0 0'
file_base = stack/test
file_suffix = png
file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
dimensions = '1 1 0'
[]
[]
[ICs]
[top_ic]
function = top
variable = u
type = FunctionIC
block = 1
[]
[bottom_ic]
function = bottom
variable = u
type = FunctionIC
block = 0
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 1
dt = 0.1
[]
[Outputs]
exodus = true
[]
(test/tests/meshmodifiers/element_subdomain_modifier/moving_boundary_h_refinement.i)
[Problem]
kernel_coverage_check = false
boundary_restricted_node_integrity_check = false
boundary_restricted_elem_integrity_check = false
type = FEProblem
[]
[Mesh]
[gen]
type = GeneratedMeshGenerator
dim = 2
nx = 5
ny = 5
xmax = 4e-3
ymax = 4e-3
[]
[active_domain] #the initially active domain
type = SubdomainBoundingBoxGenerator
input = 'gen'
block_id = 1
bottom_left = '0 0 0'
top_right = '4e-3 800e-6 0'
[]
[inactive_domain] #the initially inactive domain
type = SubdomainBoundingBoxGenerator
input = active_domain
block_id = 2
bottom_left = '0 800e-6 0'
top_right = '4e-3 4e-3 0'
[]
[sideset_top]
type = SideSetsBetweenSubdomainsGenerator
input = inactive_domain
new_boundary = 'sideset_top'
paired_block = 2
primary_block = 1
[]
[sideset_top_other_side]
type = SideSetsBetweenSubdomainsGenerator
input = sideset_top
new_boundary = 'sideset_top_other_side'
paired_block = 1
primary_block = 2
[]
[]
[Problem]
solve = false
[]
[AuxVariables]
[layerY]
[AuxKernel]
type = ParsedAux
expression = 'y - 50e-6 * ceil(t/1.000001)'
use_xyzt = true
execute_on = 'INITIAL TIMESTEP_BEGIN'
[]
[]
[]
[MeshModifiers]
[addLayer]
type = CoupledVarThresholdElementSubdomainModifier
coupled_var = 'layerY'
criterion_type = BELOW
threshold = 0
subdomain_id = 1
moving_boundaries = 'sideset_top sideset_top_other_side'
moving_boundary_subdomain_pairs = '1 2; 2 1'
execute_on = 'INITIAL TIMESTEP_BEGIN'
[]
[]
[Executioner]
type = Transient
solve_type = PJFNK
end_time = 80
dt = 1
nl_rel_tol = 1e-10
nl_abs_tol = 1e-12
[]
[Outputs]
exodus = true
csv = true
[]
[Adaptivity]
[Markers]
[boundary_moving]
type = BoundaryMarker
next_to = 'sideset_top'
mark = refine
[]
[]
max_h_level = 3
marker = boundary_moving
[]
[Postprocessors]
[area_top]
type = AreaPostprocessor
boundary = 'sideset_top'
execute_on = 'INITIAL TIMESTEP_END'
[]
[area_top_other]
type = AreaPostprocessor
boundary = 'sideset_top'
execute_on = 'INITIAL TIMESTEP_END'
[]
[]
(tutorials/darcy_thermo_mech/step10_multiapps/problems/step10.i)
[GlobalParams]
displacements = 'disp_r disp_z'
[]
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 10
ny = 100
ymax = 0.304 # Length of test chamber
xmax = 0.0257 # Test chamber radius
[]
[]
[Variables]
[pressure]
[]
[temperature]
initial_condition = 300 # Start at room temperature
[]
[]
[Physics/SolidMechanics/QuasiStatic]
[all]
# This block adds all of the proper Kernels, strain calculators, and Variables
# for SolidMechanics in the correct coordinate system (autodetected)
add_variables = true
strain = FINITE
eigenstrain_names = eigenstrain
use_automatic_differentiation = true
generate_output = 'vonmises_stress elastic_strain_xx elastic_strain_yy strain_xx strain_yy'
[]
[]
[Kernels]
[darcy_pressure]
type = DarcyPressure
variable = pressure
[]
[heat_conduction]
type = ADHeatConduction
variable = temperature
[]
[heat_conduction_time_derivative]
type = ADHeatConductionTimeDerivative
variable = temperature
[]
[heat_convection]
type = DarcyAdvection
variable = temperature
pressure = pressure
[]
[]
[BCs]
[inlet_temperature]
type = FunctionDirichletBC
variable = temperature
boundary = bottom
function = 'if(t<0,350+50*t,350)'
[]
[outlet_temperature]
type = HeatConductionOutflow
variable = temperature
boundary = top
[]
[inlet]
type = DirichletBC
variable = pressure
boundary = bottom
value = 4000 # (Pa) From Figure 2 from paper. First data point for 1mm spheres.
[]
[outlet]
type = DirichletBC
variable = pressure
boundary = top
value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
[]
[hold_inlet]
type = DirichletBC
variable = disp_z
boundary = bottom
value = 0
[]
[hold_center]
type = DirichletBC
variable = disp_r
boundary = left
value = 0
[]
[hold_outside]
type = DirichletBC
variable = disp_r
boundary = right
value = 0
[]
[]
[Materials]
viscosity_file = data/water_viscosity.csv
density_file = data/water_density.csv
specific_heat_file = data/water_specific_heat.csv
thermal_expansion_file = data/water_thermal_expansion.csv
[column]
type = PackedColumn
temperature = temperature
radius = 1
thermal_conductivity = k_eff # Use the AuxVariable instead of calculating
fluid_viscosity_file = ${viscosity_file}
fluid_density_file = ${density_file}
fluid_specific_heat_file = ${specific_heat_file}
fluid_thermal_expansion_file = ${thermal_expansion_file}
[]
[elasticity_tensor]
type = ADComputeIsotropicElasticityTensor
youngs_modulus = 200e9 # (Pa) from wikipedia
poissons_ratio = .3 # from wikipedia
[]
[elastic_stress]
type = ADComputeFiniteStrainElasticStress
[]
[thermal_strain]
type = ADComputeThermalExpansionEigenstrain
stress_free_temperature = 300
eigenstrain_name = eigenstrain
temperature = temperature
thermal_expansion_coeff = 1e-6
[]
[]
[Postprocessors/average_temperature]
type = ElementAverageValue
variable = temperature
[]
[AuxVariables/velocity]
order = CONSTANT
family = MONOMIAL_VEC
[]
[AuxVariables/k_eff] # filled from the multiapp
initial_condition = 15.0 # water at 20C
[]
[AuxKernels/velocity]
type = DarcyVelocity
variable = velocity
execute_on = timestep_end
pressure = pressure
[]
[Problem]
type = FEProblem
[]
[Executioner]
type = Transient
end_time = 200
dt = 0.25
start_time = -1
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
petsc_options_value = 'hypre boomeramg 500'
line_search = none
automatic_scaling = true
compute_scaling_once = false
steady_state_tolerance = 1e-7
steady_state_detection = true
[TimeStepper]
type = FunctionDT
function = 'if(t<0,0.1,0.25)'
[]
[]
[MultiApps/micro]
type = TransientMultiApp
app_type = DarcyThermoMechApp
positions = '0.01285 0.0 0
0.01285 0.0608 0
0.01285 0.1216 0
0.01285 0.1824 0
0.01285 0.2432 0
0.01285 0.304 0'
input_files = step10_micro.i
execute_on = 'timestep_end'
[]
[Transfers]
[keff_from_sub]
type = MultiAppPostprocessorInterpolationTransfer
from_multi_app = micro
variable = k_eff
power = 1
postprocessor = k_eff
execute_on = 'timestep_end'
[]
[temperature_to_sub]
type = MultiAppVariableValueSamplePostprocessorTransfer
to_multi_app = micro
source_variable = temperature
postprocessor = temperature_in
execute_on = 'timestep_end'
[]
[]
[Controls/multiapp]
type = TimePeriod
disable_objects = 'MultiApps::micro Transfers::keff_from_sub Transfers::temperature_to_sub'
start_time = '0'
execute_on = 'initial'
[]
[Outputs/out]
type = Exodus
elemental_as_nodal = true
[]
(tutorials/darcy_thermo_mech/step06_coupled_darcy_heat_conduction/tests/kernels/darcy_advection/darcy_advection.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 200
ny = 10
xmax = 0.304 # Length of test chamber
ymax = 0.0257 # Test chamber radius
[]
coord_type = RZ
rz_coord_axis = X
[]
[Variables]
[temperature]
initial_condition = 300 # Start at room temperature
[]
[]
[AuxVariables]
[pressure]
initial_condition = 10000
[]
[]
[Kernels]
[heat_conduction]
type = ADHeatConduction
variable = temperature
[]
[heat_conduction_time_derivative]
type = ADHeatConductionTimeDerivative
variable = temperature
[]
[heat_convection]
type = DarcyAdvection
variable = temperature
pressure = pressure
[]
[]
[BCs]
[inlet_temperature]
type = DirichletBC
variable = temperature
boundary = left
value = 350
[]
[outlet_temperature]
type = HeatConductionOutflow
variable = temperature
boundary = right
[]
[]
[Materials]
[column]
type = PackedColumn
radius = 1
temperature = temperature
[]
[]
[Problem]
type = FEProblem
[]
[Executioner]
type = Transient
num_steps = 10
dt = 0.1
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(modules/phase_field/test/tests/reconstruction/2phase_reconstruction2.i)
#
# In this test we set the initial condition of a set of order parameters
# by pulling out the only grains from given EBSD data file that belong to a specified phase
#
[Problem]
type = FEProblem
solve = false
kernel_coverage_check = false
[]
# The following sections are extracted in the documentation in
# moose/docs/content/modules/phase_field/ICs/EBSD.md
[Mesh]
[ebsd_mesh]
type = EBSDMeshGenerator
filename = Ti_2Phase_28x28_ebsd.txt
[]
[]
[GlobalParams]
op_num = 2
var_name_base = gr
[]
[UserObjects]
[ebsd_reader]
type = EBSDReader
[]
[ebsd]
type = PolycrystalEBSD
coloring_algorithm = bt
ebsd_reader = ebsd_reader
phase = 1
output_adjacency_matrix = true
[]
[]
[Variables]
[PolycrystalVariables]
[]
[]
[ICs]
[PolycrystalICs]
[PolycrystalColoringIC]
# select only data for phase 1 from the EBSD file
polycrystal_ic_uo = ebsd
[]
[]
[]
#ENDDOC - End of the file section that is included in the documentation. Do not change this line!
[Executioner]
type = Transient
num_steps = 0
[]
[Outputs]
exodus = true
[]
(modules/contact/test/tests/verification/patch_tests/ring_3/ring3_mu_0_2_pen.i)
[GlobalParams]
order = SECOND
displacements = 'disp_x disp_y'
[]
[Mesh]
file = ring3_mesh.e
coord_type = RZ
[]
[Problem]
type = FEProblem
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[]
[AuxVariables]
[./stress_xx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zz]
order = CONSTANT
family = MONOMIAL
[../]
[./penetration]
[../]
[./saved_x]
[../]
[./saved_y]
[../]
[./diag_saved_x]
[../]
[./diag_saved_y]
[../]
[./inc_slip_x]
[../]
[./inc_slip_y]
[../]
[./accum_slip_x]
[../]
[./accum_slip_y]
[../]
[./tang_force_x]
[../]
[./tang_force_y]
[../]
[]
[Kernels]
[./TensorMechanics]
use_displaced_mesh = true
save_in = 'saved_x saved_y'
[../]
[]
[AuxKernels]
[./stress_xx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xx
index_i = 0
index_j = 0
execute_on = timestep_end
[../]
[./stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
execute_on = timestep_end
[../]
[./stress_xy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xy
index_i = 0
index_j = 1
execute_on = timestep_end
[../]
[./stress_zz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zz
index_i = 2
index_j = 2
execute_on = timestep_end
[../]
[./inc_slip_x]
type = PenetrationAux
variable = inc_slip_x
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./inc_slip_y]
type = PenetrationAux
variable = inc_slip_y
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./accum_slip_x]
type = PenetrationAux
variable = accum_slip_x
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./accum_slip_y]
type = PenetrationAux
variable = accum_slip_y
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./penetration]
type = PenetrationAux
variable = penetration
boundary = 3
paired_boundary = 4
[../]
[./tang_force_x]
type = PenetrationAux
variable = tang_force_x
quantity = tangential_force_x
boundary = 3
paired_boundary = 4
[../]
[./tang_force_y]
type = PenetrationAux
variable = tang_force_y
quantity = tangential_force_y
boundary = 3
paired_boundary = 4
[../]
[] # AuxKernels
[Postprocessors]
[./bot_react_x]
type = NodalSum
variable = saved_x
boundary = 1
[../]
[./bot_react_y]
type = NodalSum
variable = saved_y
boundary = 1
[../]
[./top_react_x]
type = NodalSum
variable = saved_x
boundary = 5
[../]
[./top_react_y]
type = NodalSum
variable = saved_y
boundary = 5
[../]
[./ref_resid_x]
type = NodalL2Norm
execute_on = timestep_end
variable = saved_x
[../]
[./ref_resid_y]
type = NodalL2Norm
execute_on = timestep_end
variable = saved_y
[../]
[./sigma_yy]
type = ElementAverageValue
variable = stress_yy
[../]
[./sigma_zz]
type = ElementAverageValue
variable = stress_zz
[../]
[./disp_x2]
type = NodalVariableValue
nodeid = 1
variable = disp_x
[../]
[./disp_x11]
type = NodalVariableValue
nodeid = 10
variable = disp_x
[../]
[./disp_y2]
type = NodalVariableValue
nodeid = 1
variable = disp_y
[../]
[./disp_y11]
type = NodalVariableValue
nodeid = 10
variable = disp_y
[../]
[./_dt]
type = TimestepSize
[../]
[./num_lin_it]
type = NumLinearIterations
[../]
[./num_nonlin_it]
type = NumNonlinearIterations
[../]
[]
[BCs]
[./bot_y]
type = DirichletBC
variable = disp_y
boundary = 1
value = 0.0
[../]
[./top_press]
type = Pressure
variable = disp_y
boundary = 5
factor = 109.89
[../]
[]
[Materials]
[./bot_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '1'
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./bot_strain]
type = ComputeAxisymmetricRZIncrementalStrain
block = '1'
[../]
[./bot_stress]
type = ComputeFiniteStrainElasticStress
block = '1'
[../]
[./top_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '2'
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./top_strain]
type = ComputeAxisymmetricRZIncrementalStrain
block = '2'
[../]
[./top_stress]
type = ComputeFiniteStrainElasticStress
block = '2'
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_factor_mat_solver_type'
petsc_options_value = 'lu superlu_dist'
line_search = 'none'
nl_abs_tol = 1e-10
nl_rel_tol = 1e-9
l_max_its = 100
nl_max_its = 1000
dt = 1.0
end_time = 1.0
num_steps = 10
dtmin = 1.0
l_tol = 1e-5
[]
[VectorPostprocessors]
[./x_disp]
type = NodalValueSampler
variable = disp_x
boundary = '1 3 4 5'
sort_by = x
[../]
[./cont_press]
type = NodalValueSampler
variable = contact_pressure
boundary = '3'
sort_by = x
[../]
[]
[Outputs]
file_base = ring3_mu_0_2_pen_out
print_linear_residuals = true
perf_graph = true
[./exodus]
type = Exodus
elemental_as_nodal = true
[../]
[./console]
type = Console
max_rows = 5
[../]
[./chkfile]
type = CSV
file_base = ring3_mu_0_2_pen_check
show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x11 disp_y11 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
execute_vector_postprocessors_on = timestep_end
[../]
[./outfile]
type = CSV
delimiter = ' '
execute_vector_postprocessors_on = none
[../]
[]
[Contact]
[./leftright]
secondary = 3
primary = 4
model = coulomb
formulation = penalty
normalize_penalty = true
tangential_tolerance = 1e-3
friction_coefficient = 0.2
penalty = 1e+9
[../]
[]
(test/tests/functions/image_function/image_2d.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 20
ny = 20
[]
[Variables]
[u]
[]
[]
[Functions]
[image_func]
type = ImageFunction
file_base = stack/test
file_suffix = png
file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
[]
[]
[ICs]
[u_ic]
type = FunctionIC
function = image_func
variable = u
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 1
dt = 0.1
[]
[Outputs]
exodus = true
[]
(modules/heat_transfer/test/tests/meshed_gap_thermal_contact/meshed_gap_thermal_contact_constant_conductance.i)
[Mesh]
[fmesh]
type = FileMeshGenerator
file = meshed_gap.e
[]
[block0]
type = SubdomainBoundingBoxGenerator
input = fmesh
bottom_left = '.5 -.5 0'
top_right = '.7 .5 0'
block_id = 4
[]
[]
[Variables]
[./temp]
block = '1 3'
initial_condition = 1.0
[../]
[]
[Kernels]
[./hc]
type = HeatConduction
variable = temp
block = '1 3'
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = temp
boundary = 1
value = 1
[../]
[./right]
type = DirichletBC
variable = temp
boundary = 4
value = 2
[../]
[]
[ThermalContact]
[./gap_conductance]
type = GapHeatTransfer
variable = temp
primary = 2
secondary = 3
emissivity_primary = 0
emissivity_secondary = 0
gap_conductance = 2.5
[../]
[]
[Materials]
[./hcm]
type = HeatConductionMaterial
block = '1 3'
temp = temp
thermal_conductivity = 1
[../]
[]
[Problem]
type = FEProblem
kernel_coverage_check = false
material_coverage_check = false
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
[./out]
type = Exodus
[../]
[]
(test/tests/auxkernels/pp_depend/pp_depend_indirect_wrong.i)
[Mesh]
type = GeneratedMesh
dim = 1
[]
[Variables]
[u]
[]
[]
[Functions]
[t_func]
type = ParsedFunction
expression = ptime
symbol_names = ptime
symbol_values = ptime_pp
[]
[]
[Kernels]
[diff]
type = Diffusion
variable = u
[]
[]
[Postprocessors]
# This FunctionValuePostprocessor uses an outdated value for ptime
[t_pp1]
type = FunctionValuePostprocessor
function = t_func
[]
[ptime_pp]
type = TimePostprocessor
[]
# This FunctionValuePostprocessor uses the current value for ptime
# This is construction order dependent
[t_pp2]
type = FunctionValuePostprocessor
function = t_func
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
dt = 1
num_steps = 5
[]
[Outputs]
csv = true
[]
(modules/phase_field/test/tests/feature_flood_test/parallel_feature_count.i)
[Mesh]
type = ImageMesh
dim = 2
file = spiral_16x16.png
scale_to_one = false
[]
[Variables]
[./u]
order = CONSTANT
family = MONOMIAL
[../]
[]
[AuxVariables]
[./feature]
order = CONSTANT
family = MONOMIAL
[../]
[./proc_id]
order = CONSTANT
family = MONOMIAL
[../]
[./feature_ghost]
order = CONSTANT
family = MONOMIAL
[../]
[]
[AuxKernels]
[./nodal_flood_aux]
type = FeatureFloodCountAux
variable = feature
flood_counter = flood_count_pp
execute_on = 'initial timestep_end'
[../]
[./proc_id]
type = ProcessorIDAux
variable = proc_id
execute_on = 'initial timestep_end'
[../]
[./ghost]
type = FeatureFloodCountAux
variable = feature_ghost
field_display = GHOSTED_ENTITIES
flood_counter = flood_count_pp
execute_on = 'initial timestep_end'
[../]
[]
[Functions]
[./tif]
type = ImageFunction
component = 0
[../]
[]
[ICs]
[./u_ic]
type = FunctionIC
function = tif
variable = u
[../]
[]
[Postprocessors]
[./flood_count_pp]
type = FeatureFloodCount
variable = u
threshold = 1.0
execute_on = 'initial timestep_end'
[../]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
[]
[Outputs]
csv = true
[]
(test/tests/misc/stop_for_debugger/stop_for_debugger.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = left
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = right
value = 1
[../]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
(tutorials/darcy_thermo_mech/step02_darcy_pressure/problems/step2.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator # Can generate simple lines, rectangles and rectangular prisms
dim = 2 # Dimension of the mesh
nx = 100 # Number of elements in the x direction
ny = 10 # Number of elements in the y direction
xmax = 0.304 # Length of test chamber
ymax = 0.0257 # Test chamber radius
[]
coord_type = RZ # Axisymmetric RZ
rz_coord_axis = X # Which axis the symmetry is around
[]
[Variables/pressure]
# Adds a Linear Lagrange variable by default
[]
[Kernels/darcy_pressure]
type = DarcyPressure
variable = pressure
permeability = 0.8451e-9 # (m^2) 1mm spheres.
[]
[BCs]
[inlet]
type = DirichletBC # Simple u=value BC
variable = pressure # Variable to be set
boundary = left # Name of a sideset in the mesh
value = 4000 # (Pa) From Figure 2 from paper. First data point for 1mm spheres.
[]
[outlet]
type = DirichletBC
variable = pressure
boundary = right
value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
[]
[]
[Problem]
type = FEProblem # This is the "normal" type of Finite Element Problem in MOOSE
[]
[Executioner]
type = Steady # Steady state problem
solve_type = NEWTON # Perform a Newton solve, uses AD to compute Jacobian terms
petsc_options_iname = '-pc_type -pc_hypre_type' # PETSc option pairs with values below
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true # Output Exodus format
[]
(test/tests/meshgenerators/subdomain_bounding_box_generator/oriented_subdomain_bounding_box_generator.i)
[Mesh]
[./gmg]
type = GeneratedMeshGenerator
dim = 3
xmin = -6
xmax = 4
nx = 10
ymin = -2
ymax = 10
ny = 12
zmin = -5
zmax = 7
nz = 12
[]
[./subdomains]
type = OrientedSubdomainBoundingBoxGenerator
input = gmg
center = '-1 4 1'
width = 5
length = 10
height = 4
width_direction = '2 1 0'
length_direction = '-1 2 2'
block_id = 10
[]
[]
[Problem]
type = FEProblem
solve = false
kernel_coverage_check = false
[]
[Variables]
[./u]
[../]
[]
[Executioner]
type = Steady
solve_type = PJFNK
[]
[Outputs]
exodus = true
[]
(modules/phase_field/test/tests/initial_conditions/MultiSmoothSuperellipsoidIC_2D.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 50
ny = 50
nz = 0
xmax = 100
ymax = 100
zmax = 0
elem_type = QUAD4
[]
[Variables]
[./c]
order = FIRST
family = LAGRANGE
[../]
[]
[ICs]
[./c]
type = MultiSmoothSuperellipsoidIC
variable = c
invalue = 1.0
outvalue = 0.1
bubspac = '10 5'
numbub = '5 5'
semiaxis_b_variation = '0.25 0.35'
semiaxis_variation_type = uniform
semiaxis_a_variation = '0.2 0.3'
semiaxis_a = '7 5'
semiaxis_b = '10 8'
exponent = '2 3'
prevent_overlap = true
semiaxis_c_variation = '0 0'
semiaxis_c = '1 1'
[../]
[]
[Executioner]
type = Transient
scheme = bdf2
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart -mat_mffd_type'
petsc_options_value = 'hypre boomeramg 31 ds'
l_max_its = 20
l_tol = 1e-4
nl_max_its = 20
nl_rel_tol = 1e-9
nl_abs_tol = 1e-11
start_time = 0.0
num_steps = 1
dt = 100.0
[./Adaptivity]
refine_fraction = .5
[../]
[]
[Outputs]
exodus = true
[]
[Problem]
type = FEProblem
solve = false
[]
(test/tests/meshgenerators/flip_sideset_generator/flux_flip_2D.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 3
ny = 3
xmax = 3
ymax = 3
[]
[s1]
type = ParsedGenerateSideset
input = gmg
combinatorial_geometry = 'x > 0.9 & x < 1.1 & y > -0.1 & y < 1.1'
normal = '1 0 0'
new_sideset_name = s1
[]
[s2]
type = ParsedGenerateSideset
input = s1
combinatorial_geometry = 'x > 0.9 & x < 2.1 & y > 0.9 & y < 1.1'
normal = '0 1 0'
new_sideset_name = s2
[]
[s3]
type = ParsedGenerateSideset
input = s2
combinatorial_geometry = 'x > 1.9 & x < 2.1 & y > 0.9 & y < 2.1'
normal = '1 0 0'
new_sideset_name = s3
[]
[s4]
type = ParsedGenerateSideset
input = s3
combinatorial_geometry = 'x > 1.9 & x < 3.1 & y > 1.9 & y < 2.1'
normal = '0 1 0'
new_sideset_name = s4
[]
[sideset]
type = SideSetsFromBoundingBoxGenerator
input = s4
bottom_left = '0 0 0'
top_right = '3 3 3'
included_boundaries = 's1 s2 s3 s4'
boundary_new = 's_combined'
[]
[flip]
type = FlipSidesetGenerator
input = sideset
boundary = s_combined
[]
[]
[AuxVariables]
[u]
[]
[]
[AuxKernels]
[diffusion]
type = FunctionAux
variable = u
function = func
[]
[]
[Functions]
[func]
type = ParsedFunction
expression = x+y
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Postprocessors]
[flux]
type = SideDiffusiveFluxIntegral
variable = u
boundary = s_combined
diffusivity = 1
[]
[area]
type = AreaPostprocessor
boundary = s_combined
[]
[]
[Executioner]
type = Steady
[]
[Outputs]
csv = true
[]
(test/tests/parser/vector_multimooseenum/vmme.i)
[Mesh]
type = GeneratedMesh
dim = 3
[]
[Materials]
[vmme]
type = VecMultiMooseEnumMaterial
mme = 'b; c a; a b c d e; e'
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 1
[]
(test/tests/auxkernels/pp_depend/pp_depend.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
[]
[Variables]
[./u]
[../]
[]
[AuxVariables]
[./pp_aux]
[../]
[]
[Functions]
[./t_func]
type = ParsedFunction
expression = t
[../]
[]
[Kernels]
[./diff]
type = CoefDiffusion
variable = u
coef = 0.01
[../]
[]
[AuxKernels]
[./pp_aux]
type = PostprocessorAux
variable = pp_aux
execute_on = timestep_end
pp = t_pp
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = left
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = right
value = 1
[../]
[]
[Postprocessors]
[./t_pp]
type = FunctionValuePostprocessor
function = t_func
[../]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
solve_type = PJFNK
dt = 1
num_steps = 5
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(test/tests/materials/generic_materials/ad_generic_constant_real_vector_value.i)
[Mesh]
type = GeneratedMesh
dim = 1
[]
[Problem]
type = FEProblem
solve = false
[]
[Materials]
[vector]
type = ADGenericConstantRealVectorValue
vector_name = constant
vector_values = '1 2 3'
outputs = all
[]
[]
[Executioner]
type = Transient
num_steps = 1
[]
[Outputs]
exodus = true
[]
(tutorials/darcy_thermo_mech/step10_multiapps/tests/auxkernels/corrosion/corrosion.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 10
ny = 10
ymax = 0.1
xmax = 0.1
[]
uniform_refine = 0
[]
[Adaptivity]
max_h_level = 3
initial_steps = 5
cycles_per_step = 2
initial_marker = error_marker
marker = error_marker
[Indicators]
[phi_jump]
type = GradientJumpIndicator
variable = phi
[]
[]
[Markers]
[error_marker]
type = ErrorFractionMarker
indicator = phi_jump
refine = 0.9
[]
[]
[]
[Variables]
[temperature]
initial_condition = 300
[]
[]
[AuxVariables]
[phi]
[]
[]
[AuxKernels]
[corrosion]
type = RandomCorrosion
execute_on = 'timestep_end'
variable = phi
reference_temperature = 300
temperature = 301
[]
[]
[Kernels]
[heat_conduction]
type = ADHeatConduction
variable = temperature
[]
[]
[BCs]
[left]
type = PostprocessorDirichletBC
variable = temperature
boundary = left
postprocessor = 301
[]
[right]
type = NeumannBC
variable = temperature
boundary = right
value = 100 # prescribed flux
[]
[]
[Materials]
[column]
type = PackedColumn
temperature = temperature
radius = 1 # mm
phase = phi
outputs = exodus
output_properties = porosity
[]
[]
[Problem]
type = FEProblem
[]
[Postprocessors]
[k_eff]
type = ThermalConductivity
variable = temperature
T_hot = 301
flux = 100
dx = 0.1
boundary = right
length_scale = 1
[]
[]
[Executioner]
type = Transient
num_steps = 5
dt = 0.5
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
execute_on = 'initial timestep_end'
exodus = true
[console]
type = Console
execute_postprocessors_on = 'timestep_begin timestep_end'
[]
[]
[ICs]
[close_pack]
radius = 0.01
outvalue = 0 # water
variable = phi
invalue = 1 #steel
type = ClosePackIC
[]
[]
(test/tests/transfers/multiapp_copy_transfer/constant_monomial_to_sub/sub.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
[]
[Variables]
[./u]
family = MONOMIAL
order = CONSTANT
[../]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
[]
[Outputs]
exodus = true
[]
(test/tests/transfers/multiapp_copy_transfer/constant_monomial_from_sub/sub.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
[]
[AuxVariables]
[./aux]
family = MONOMIAL
order = CONSTANT
[../]
[]
[AuxKernels]
[./aux]
type = FunctionAux
variable = aux
execute_on = initial
function = 10*x*y
[../]
[]
[Problem]
type = FEProblem
solve = false
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = left
value = 1
[../]
[./right]
type = DirichletBC
variable = u
boundary = right
value = 2
[../]
[]
[Executioner]
type = Transient
num_steps = 1
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
hide = 'u'
exodus = true
[]
(modules/phase_field/test/tests/reconstruction/2phase_reconstruction3.i)
#
# In this test , which is set up similarly to 2phase_reconstruction_test2.i
# we demonstrate that the feature numbers in the EBSD file can be chosen arbitrarily.
# There is no need for then to start at a certain index or even to be contiguous!
# The EBSDReaderPointDataAux AuxKernel outputs the original feature IDs (grain numbers)
#
[Problem]
type = FEProblem
solve = false
kernel_coverage_check = false
[]
[Mesh]
[ebsd_mesh]
type = EBSDMeshGenerator
filename = Renumbered.txt
[]
[]
[GlobalParams]
op_num = 2
var_name_base = gr
[]
[UserObjects]
[ebsd_reader]
type = EBSDReader
[]
[ebsd]
type = PolycrystalEBSD
coloring_algorithm = bt
ebsd_reader = ebsd_reader
phase = 1
output_adjacency_matrix = true
[]
[]
[ICs]
[PolycrystalICs]
[PolycrystalColoringIC]
polycrystal_ic_uo = ebsd
[]
[]
[]
[AuxVariables]
[GRAIN]
family = MONOMIAL
order = CONSTANT
[]
[]
[AuxKernels]
[grain_aux]
type = EBSDReaderPointDataAux
variable = GRAIN
ebsd_reader = ebsd_reader
data_name = 'feature_id'
execute_on = 'initial'
[]
[]
[Variables]
[PolycrystalVariables]
[]
[]
[Executioner]
type = Transient
num_steps = 0
[]
[Outputs]
exodus = true
[]
(test/tests/multiapps/command_line/parent.i)
[Mesh]
type = GeneratedMesh
dim = 1
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
[]
[MultiApps]
[sub]
type = FullSolveMultiApp
positions = '0 0 0
1 1 1'
input_files = 'sub.i'
cli_args = 'Mesh/mesh/type=GeneratedMeshGenerator;Mesh/mesh/dim=1;Mesh/mesh/nx=10
Mesh/mesh/type=GeneratedMeshGenerator;Mesh/mesh/dim=1;Mesh/mesh/nx=100'
[]
[]
(modules/phase_field/test/tests/initial_conditions/PolycrystalVoronoiVoidIC_periodic.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 85
ny = 85
nz = 0
xmax = 250
ymax = 250
zmax = 0
elem_type = QUAD4
[]
[GlobalParams]
op_num = 5
grain_num = 5
var_name_base = gr
numbub = 15
bubspac = 22
radius = 8
int_width = 10
invalue = 1
outvalue = 0.1
[]
[Variables]
[c]
[]
[w]
scaling = 1.0e4
[]
[PolycrystalVariables]
[]
[]
[ICs]
[PolycrystalICs]
[PolycrystalVoronoiVoidIC]
polycrystal_ic_uo = voronoi
[]
[]
[c_IC]
variable = c
type = PolycrystalVoronoiVoidIC
structure_type = voids
polycrystal_ic_uo = voronoi
[]
[]
[UserObjects]
[voronoi]
type = PolycrystalVoronoi
rand_seed = 10
int_width = 0
[]
[]
[BCs]
[Periodic]
[all]
auto_direction = 'x y'
[]
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 0
[]
[Outputs]
exodus = true
[]
(modules/porous_flow/test/tests/fluidstate/theis_brineco2.i)
# Two phase Theis problem: Flow from single source.
# Constant rate injection 2 kg/s
# 1D cylindrical mesh
# Initially, system has only a liquid phase, until enough gas is injected
# to form a gas phase, in which case the system becomes two phase.
#
# This test takes a few minutes to run, so is marked heavy
[Mesh]
type = GeneratedMesh
dim = 1
nx = 2000
xmax = 2000
rz_coord_axis = Y
coord_type = RZ
[]
[Problem]
type = FEProblem
[]
[GlobalParams]
PorousFlowDictator = dictator
gravity = '0 0 0'
[]
[AuxVariables]
[saturation_gas]
order = CONSTANT
family = MONOMIAL
[]
[x1]
order = CONSTANT
family = MONOMIAL
[]
[y0]
order = CONSTANT
family = MONOMIAL
[]
[]
[AuxKernels]
[saturation_gas]
type = PorousFlowPropertyAux
variable = saturation_gas
property = saturation
phase = 1
execute_on = timestep_end
[]
[x1]
type = PorousFlowPropertyAux
variable = x1
property = mass_fraction
phase = 0
fluid_component = 1
execute_on = timestep_end
[]
[y0]
type = PorousFlowPropertyAux
variable = y0
property = mass_fraction
phase = 1
fluid_component = 0
execute_on = timestep_end
[]
[]
[Variables]
[pgas]
initial_condition = 20e6
[]
[zi]
initial_condition = 0
[]
[xnacl]
initial_condition = 0.1
[]
[]
[Kernels]
[mass0]
type = PorousFlowMassTimeDerivative
fluid_component = 0
variable = pgas
[]
[flux0]
type = PorousFlowAdvectiveFlux
fluid_component = 0
variable = pgas
[]
[mass1]
type = PorousFlowMassTimeDerivative
fluid_component = 1
variable = zi
[]
[flux1]
type = PorousFlowAdvectiveFlux
fluid_component = 1
variable = zi
[]
[mass2]
type = PorousFlowMassTimeDerivative
fluid_component = 2
variable = xnacl
[]
[flux2]
type = PorousFlowAdvectiveFlux
fluid_component = 2
variable = xnacl
[]
[]
[UserObjects]
[dictator]
type = PorousFlowDictator
porous_flow_vars = 'pgas zi xnacl'
number_fluid_phases = 2
number_fluid_components = 3
[]
[pc]
type = PorousFlowCapillaryPressureConst
pc = 0
[]
[fs]
type = PorousFlowBrineCO2
brine_fp = brine
co2_fp = co2
capillary_pressure = pc
[]
[]
[FluidProperties]
[co2sw]
type = CO2FluidProperties
[]
[co2]
type = TabulatedFluidProperties
fp = co2sw
fluid_property_file = 'fluid_properties.csv'
allow_fp_and_tabulation = true
error_on_out_of_bounds = false
[]
[water]
type = Water97FluidProperties
[]
[watertab]
type = TabulatedFluidProperties
fp = water
temperature_min = 273.15
temperature_max = 573.15
fluid_property_output_file = water_fluid_properties.csv
# Comment out the fp parameter and uncomment below to use the newly generated tabulation
# fluid_property_file = water_fluid_properties.csv
[]
[brine]
type = BrineFluidProperties
water_fp = watertab
[]
[]
[Materials]
[temperature]
type = PorousFlowTemperature
temperature = 20
[]
[brineco2]
type = PorousFlowFluidState
gas_porepressure = pgas
z = zi
temperature_unit = Celsius
xnacl = xnacl
capillary_pressure = pc
fluid_state = fs
[]
[porosity]
type = PorousFlowPorosityConst
porosity = 0.2
[]
[permeability]
type = PorousFlowPermeabilityConst
permeability = '1e-12 0 0 0 1e-12 0 0 0 1e-12'
[]
[relperm_water]
type = PorousFlowRelativePermeabilityCorey
n = 2
phase = 0
s_res = 0.1
sum_s_res = 0.1
[]
[relperm_gas]
type = PorousFlowRelativePermeabilityCorey
n = 2
phase = 1
[]
[]
[BCs]
[rightwater]
type = DirichletBC
boundary = right
value = 20e6
variable = pgas
[]
[]
[DiracKernels]
[source]
type = PorousFlowSquarePulsePointSource
point = '0 0 0'
mass_flux = 2
variable = zi
[]
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
[Executioner]
type = Transient
solve_type = NEWTON
end_time = 1e5
[TimeStepper]
type = IterationAdaptiveDT
dt = 1
growth_factor = 1.5
[]
[]
[VectorPostprocessors]
[line]
type = LineValueSampler
warn_discontinuous_face_values = false
sort_by = x
start_point = '0 0 0'
end_point = '2000 0 0'
num_points = 10000
variable = 'pgas zi xnacl x1 saturation_gas'
execute_on = 'timestep_end'
[]
[]
[Postprocessors]
[pgas]
type = PointValue
point = '4 0 0'
variable = pgas
[]
[sgas]
type = PointValue
point = '4 0 0'
variable = saturation_gas
[]
[zi]
type = PointValue
point = '4 0 0'
variable = zi
[]
[massgas]
type = PorousFlowFluidMass
fluid_component = 1
[]
[x1]
type = PointValue
point = '4 0 0'
variable = x1
[]
[y0]
type = PointValue
point = '4 0 0'
variable = y0
[]
[xnacl]
type = PointValue
point = '4 0 0'
variable = xnacl
[]
[]
[Outputs]
print_linear_residuals = false
perf_graph = true
[csvout]
type = CSV
execute_on = timestep_end
execute_vector_postprocessors_on = final
[]
[]
(modules/phase_field/test/tests/initial_conditions/BlockRestriction.i)
[Mesh]
[two_blocks]
type = CartesianMeshGenerator
dim = 2
dx = '1.5 2.4'
dy = '1.3'
ix = '5 5'
iy = '5'
subdomain_id = '0 1'
[]
[]
[Variables]
[bicrystal0_0]
[]
[bicrystal0_1]
[]
[bicrystal1_0]
[]
[bicrystal1_1]
[]
[tricrystal_0]
[]
[tricrystal_1]
[]
[tricrystal_2]
[]
[random_0]
[]
[random_1]
[]
[voronoi_0]
[]
[voronoi_1]
[]
[voronoi_2]
[]
[voronoi_3]
[]
[voronoi_4]
[]
[voronoi_5]
[]
[voronoi_6]
[]
[voronoi_7]
[]
[]
[ICs]
[PolycrystalICs]
[BicrystalBoundingBoxIC]
block = '0'
var_name_base = 'bicrystal0_'
op_num = 2
x1 = 0
x2 = 1
y1 = 0
y2 = 1
[]
[BicrystalCircleGrainIC]
block = '0'
var_name_base = 'bicrystal1_'
op_num = 2
x = 2.7
y = 0.6
radius = 2
[]
[Tricrystal2CircleGrainsIC]
block = '0'
var_name_base = 'tricrystal_'
op_num = 3
[]
[PolycrystalRandomIC]
block = '0'
var_name_base = 'random_'
op_num = 2
random_type = 'continuous'
[]
[PolycrystalVoronoiVoidIC]
polycrystal_ic_uo = voronoi
block = '0'
numbub = 3
bubspac = 0.02
radius = 0.05
invalue = 1
outvalue = 0.1
var_name_base = 'voronoi_'
op_num = 8
[]
[]
[]
[UserObjects]
[voronoi]
type = PolycrystalVoronoi
rand_seed = 10
int_width = 0
var_name_base = 'voronoi_'
op_num = 8
grain_num = 4
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 0
[]
[Outputs]
exodus = true
[]
(test/tests/indicators/value_jump_indicator/vec_value_jump_indicator.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 5
ny = 5
[]
[Adaptivity]
[./Indicators]
[./error]
type = VectorValueJumpIndicator
variable = something
[../]
[../]
[]
[ICs]
[./leftright_1]
type = BoundingBoxIC
variable = something_1
inside = 1
y2 = 0.5
y1 = 0
x2 = 0.5
x1 = 0
[../]
[]
[AuxVariables]
[./something]
type = VectorMooseVariable
order = CONSTANT
family = MONOMIAL_VEC
[../]
[./something_1]
order = CONSTANT
family = MONOMIAL
outputs = 'none'
[../]
[]
[AuxKernels]
[something]
type = ParsedVectorAux
variable = something
coupled_variables = 'something_1'
expression_x = 'something_1'
expression_y = '0.0'
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
solve_type = PJFNK
[]
[Outputs]
exodus = true
[]
(test/tests/tag/2d_diffusion_tag_vector.i)
[Mesh]
[square]
type = GeneratedMeshGenerator
nx = 2
ny = 2
dim = 2
[]
[]
[Variables]
[u]
order = FIRST
family = LAGRANGE
[]
[]
[AuxVariables]
[tag_variable1]
order = FIRST
family = LAGRANGE
[]
[tag_variable2]
order = FIRST
family = LAGRANGE
[]
[]
[Kernels]
[diff]
type = Diffusion
variable = u
extra_vector_tags = 'vec_tag1 vec_tag2'
[]
[]
[AuxKernels]
active = 'TagVectorAux1 TagVectorAux2'
[TagVectorAux1]
type = TagVectorAux
variable = tag_variable1
v = u
vector_tag = vec_tag1
[]
[on_the_fly]
type = OnTheFlyTagVectorAux
variable = tag_variable1
v = u
vector_tag = vec_tag1
[]
[TagVectorAux2]
type = TagVectorAux
variable = tag_variable2
v = u
vector_tag = vec_tag2
[]
[]
[BCs]
[left]
type = DirichletBC
variable = u
boundary = 3
value = 0
preset = false
extra_vector_tags = vec_tag1
[]
[right]
type = DirichletBC
variable = u
boundary = 1
value = 1
preset = false
extra_vector_tags = vec_tag2
[]
[]
[Problem]
type = FEProblem
extra_tag_vectors = 'vec_tag1 vec_tag2'
[]
[Executioner]
type = Steady
solve_type = 'NEWTON'
[]
[Outputs]
file_base = tag_vector_out
exodus = true
[]
(test/tests/problems/no_solve/no_solve.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
[]
[AuxVariables]
[./t]
[../]
[]
[AuxKernels]
[./t]
type = FunctionAux
variable = t
function = t
execute_on = timestep_end
[../]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 5
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(test/tests/functions/image_function/image_mesh_2d.i)
[Mesh]
type = ImageMesh
dim = 2
file = stack/test_00.png
[]
[Variables]
[u]
[]
[]
[Functions]
[image_func]
# ImageFunction gets its file range parameters from ImageMesh,
# when it is present. This prevents duplicating information in
# input files.
type = ImageFunction
[]
[]
[ICs]
[u_ic]
type = FunctionIC
function = image_func
variable = u
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 1
dt = 0.1
[]
[Outputs]
exodus = true
[]
(modules/stochastic_tools/test/tests/multiapps/batch_commandline_control/sub.i)
[Mesh]
type = GeneratedMesh
dim = 1
[]
[Variables]
[u]
initial_condition = 1980
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
[]
[Materials]
[const]
type = GenericConstantMaterial
prop_names = 'A B C D'
prop_values = '1.0 2.0 3.0 4.0'
[]
[]
[Postprocessors]
[size]
type = AverageElementSize
execute_on = 'initial'
[]
[prop_A]
type = ElementAverageMaterialProperty
mat_prop = A
execute_on = 'initial'
[]
[prop_B]
type = ElementAverageMaterialProperty
mat_prop = B
execute_on = 'initial'
[]
[prop_C]
type = ElementAverageMaterialProperty
mat_prop = C
execute_on = 'initial'
[]
[prop_D]
type = ElementAverageMaterialProperty
mat_prop = D
execute_on = 'initial'
[]
[]
(test/tests/transfers/errors/sub.i)
[Problem]
type = FEProblem
solve = false
[]
[Mesh]
type = GeneratedMesh
dim = 2
[]
[AuxVariables/aux]
initial_condition = 1980
[]
[Executioner]
type = Transient
[]
[Outputs]
execute_on = 'FINAL'
[]
(tutorials/darcy_thermo_mech/step02_darcy_pressure/tests/kernels/darcy_pressure/darcy_pressure.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 100
ny = 10
xmax = 0.304 # Length of test chamber
ymax = 0.0257 # Test chamber radius
[]
coord_type = RZ
rz_coord_axis = X
[]
[Variables]
[pressure]
[]
[]
[Kernels]
[darcy_pressure]
type = DarcyPressure
variable = pressure
permeability = 0.8451e-9 # (m^2) 1mm spheres.
[]
[]
[BCs]
[inlet]
type = DirichletBC
variable = pressure
boundary = left
value = 4000 # (Pa) From Figure 2 from paper. First dot for 1mm spheres.
[]
[outlet]
type = DirichletBC
variable = pressure
boundary = right
value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
[]
[]
[Problem]
type = FEProblem
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(test/tests/misc/update-displaced-aux-local-soln/test.i)
[GlobalParams]
use_displaced_mesh = true
displacements = 'disp_x disp_y disp_z'
[]
[Mesh]
[gen]
type = GeneratedMeshGenerator
dim = 2
xmin = -1
xmax = 1
[]
[]
[AuxVariables]
[disp_x]
[]
[disp_y]
[]
[disp_z]
[]
[something]
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[AuxKernels]
[something]
type = ConstantAux
variable = something
value = 7
execute_on = 'initial timestep_end'
[]
[]
[Executioner]
type = Transient
num_steps = 2
[]
[Postprocessors]
[cell_t_left]
type = PointValue
variable = something
point = '-0.01 0.0 0.0'
execute_on = 'initial timestep_end'
[]
[]
[Outputs]
csv = true
[]
(modules/contact/test/tests/verification/patch_tests/cyl_3/cyl3_mu_0_2_pen.i)
[GlobalParams]
order = SECOND
displacements = 'disp_x disp_y'
[]
[Mesh]
file = cyl3_mesh.e
coord_type = RZ
[]
[Problem]
type = FEProblem
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[]
[AuxVariables]
[./stress_xx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zz]
order = CONSTANT
family = MONOMIAL
[../]
[./penetration]
[../]
[./saved_x]
[../]
[./saved_y]
[../]
[./diag_saved_x]
[../]
[./diag_saved_y]
[../]
[./inc_slip_x]
[../]
[./inc_slip_y]
[../]
[./accum_slip_x]
[../]
[./accum_slip_y]
[../]
[./tang_force_x]
[../]
[./tang_force_y]
[../]
[]
[Kernels]
[./TensorMechanics]
use_displaced_mesh = true
save_in = 'saved_x saved_y'
[../]
[]
[AuxKernels]
[./stress_xx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xx
index_i = 0
index_j = 0
execute_on = timestep_end
[../]
[./stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
execute_on = timestep_end
[../]
[./stress_xy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xy
index_i = 0
index_j = 1
execute_on = timestep_end
[../]
[./stress_zz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zz
index_i = 2
index_j = 2
execute_on = timestep_end
[../]
[./inc_slip_x]
type = PenetrationAux
variable = inc_slip_x
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./inc_slip_y]
type = PenetrationAux
variable = inc_slip_y
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./accum_slip_x]
type = PenetrationAux
variable = accum_slip_x
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./accum_slip_y]
type = PenetrationAux
variable = accum_slip_y
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./penetration]
type = PenetrationAux
variable = penetration
boundary = 3
paired_boundary = 4
[../]
[./tang_force_x]
type = PenetrationAux
variable = tang_force_x
quantity = tangential_force_x
boundary = 3
paired_boundary = 4
[../]
[./tang_force_y]
type = PenetrationAux
variable = tang_force_y
quantity = tangential_force_y
boundary = 3
paired_boundary = 4
[../]
[] # AuxKernels
[Postprocessors]
[./bot_react_x]
type = NodalSum
variable = saved_x
boundary = 1
[../]
[./bot_react_y]
type = NodalSum
variable = saved_y
boundary = 1
[../]
[./top_react_x]
type = NodalSum
variable = saved_x
boundary = 5
[../]
[./top_react_y]
type = NodalSum
variable = saved_y
boundary = 5
[../]
[./ref_resid_x]
type = NodalL2Norm
execute_on = timestep_end
variable = saved_x
[../]
[./ref_resid_y]
type = NodalL2Norm
execute_on = timestep_end
variable = saved_y
[../]
[./sigma_yy]
type = ElementAverageValue
variable = stress_yy
[../]
[./sigma_zz]
type = ElementAverageValue
variable = stress_zz
[../]
[./disp_x2]
type = NodalVariableValue
nodeid = 1
variable = disp_x
[../]
[./disp_x11]
type = NodalVariableValue
nodeid = 10
variable = disp_x
[../]
[./disp_y2]
type = NodalVariableValue
nodeid = 1
variable = disp_y
[../]
[./disp_y11]
type = NodalVariableValue
nodeid = 10
variable = disp_y
[../]
[./_dt]
type = TimestepSize
[../]
[./num_lin_it]
type = NumLinearIterations
[../]
[./num_nonlin_it]
type = NumNonlinearIterations
[../]
[]
[BCs]
[./bot_y]
type = DirichletBC
variable = disp_y
boundary = 1
value = 0.0
[../]
[./side_x]
type = DirichletBC
variable = disp_x
boundary = 2
value = 0.0
[../]
[./top_press]
type = Pressure
variable = disp_y
boundary = 5
factor = 109.89
[../]
[]
[Materials]
[./bot_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '1'
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./bot_strain]
type = ComputeAxisymmetricRZIncrementalStrain
block = '1'
[../]
[./bot_stress]
type = ComputeFiniteStrainElasticStress
block = '1'
[../]
[./top_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '2'
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./top_strain]
type = ComputeAxisymmetricRZIncrementalStrain
block = '2'
[../]
[./top_stress]
type = ComputeFiniteStrainElasticStress
block = '2'
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_factor_mat_solver_type'
petsc_options_value = 'lu superlu_dist'
line_search = 'none'
nl_abs_tol = 1e-7
nl_rel_tol = 1e-6
l_max_its = 50
nl_max_its = 100
dt = 1.0
end_time = 1.0
num_steps = 10
dtmin = 1.0
l_tol = 1e-4
[]
[VectorPostprocessors]
[./x_disp]
type = NodalValueSampler
variable = disp_x
boundary = '1 3 4 5'
sort_by = x
[../]
[./cont_press]
type = NodalValueSampler
variable = contact_pressure
boundary = '3'
sort_by = x
[../]
[]
[Outputs]
file_base = cyl3_mu_0_2_pen_out
print_linear_residuals = true
perf_graph = true
[./exodus]
type = Exodus
elemental_as_nodal = true
[../]
[./console]
type = Console
max_rows = 5
[../]
[./chkfile]
type = CSV
file_base = cyl3_mu_0_2_pen_check
show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x11 disp_y11 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
execute_vector_postprocessors_on = timestep_end
[../]
[./outfile]
type = CSV
delimiter = ' '
execute_vector_postprocessors_on = none
[../]
[]
[Contact]
[./leftright]
secondary = 3
primary = 4
model = coulomb
formulation = penalty
normalize_penalty = true
tangential_tolerance = 1e-3
friction_coefficient = 0.2
penalty = 1e+9
[../]
[]
(modules/phase_field/test/tests/reconstruction/2phase_reconstruction4.i)
#
# In this test we set the initial condition of a set of order parameters
# by pulling out the only grains from given EBSD data file that belong to a specified phase
#
[Problem]
type = FEProblem
solve = false
kernel_coverage_check = false
[]
[Mesh]
[ebsd_mesh]
type = EBSDMeshGenerator
filename = ebsd_40x40_2_phase.txt
[]
[]
[GlobalParams]
op_num = 6
var_name_base = gr
[]
[UserObjects]
[ebsd_reader]
type = EBSDReader
[]
[ebsd]
type = PolycrystalEBSD
coloring_algorithm = bt
ebsd_reader = ebsd_reader
phase = 2
output_adjacency_matrix = true
[]
[grain_tracker]
type = GrainTracker
polycrystal_ic_uo = ebsd
remap_grains = false
[]
[]
[AuxVariables]
[var_indices]
family = MONOMIAL
order = CONSTANT
[]
[]
[AuxKernels]
[var_indices]
type = FeatureFloodCountAux
variable = var_indices
flood_counter = grain_tracker
field_display = VARIABLE_COLORING
[]
[]
[ICs]
[PolycrystalICs]
[PolycrystalColoringIC]
polycrystal_ic_uo = ebsd
[]
[]
[]
[Variables]
[PolycrystalVariables]
[]
[]
[Executioner]
type = Transient
num_steps = 0
[]
[Outputs]
exodus = true
[]
(modules/stochastic_tools/test/tests/multiapps/commandline_control/sub.i)
[Mesh]
type = GeneratedMesh
dim = 1
[]
[Variables]
[u]
initial_condition = 1980
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
[]
[Postprocessors]
[size]
type = AverageElementSize
execute_on = 'initial'
[]
[]
[Outputs]
csv = true
[]
(tutorials/darcy_thermo_mech/step07_adaptivity/problems/step7a_coarse.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 30
ny = 3
xmax = 0.304 # Length of test chamber
ymax = 0.0257 # Test chamber radius
[]
coord_type = RZ
rz_coord_axis = X
[]
[Variables]
[pressure]
[]
[temperature]
initial_condition = 300 # Start at room temperature
[]
[]
[Kernels]
[darcy_pressure]
type = DarcyPressure
variable = pressure
[]
[heat_conduction]
type = ADHeatConduction
variable = temperature
[]
[heat_conduction_time_derivative]
type = ADHeatConductionTimeDerivative
variable = temperature
[]
[heat_convection]
type = DarcyAdvection
variable = temperature
pressure = pressure
[]
[]
[BCs]
[inlet_temperature]
type = FunctionDirichletBC
variable = temperature
boundary = left
function = 'if(t<0,350+50*t,350)'
[]
[outlet_temperature]
type = HeatConductionOutflow
variable = temperature
boundary = right
[]
[inlet]
type = DirichletBC
variable = pressure
boundary = left
value = 4000 # (Pa) From Figure 2 from paper. First data point for 1mm spheres.
[]
[outlet]
type = DirichletBC
variable = pressure
boundary = right
value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
[]
[]
[Materials/column]
type = PackedColumn
temperature = temperature
radius = 1
[]
[AuxVariables/velocity]
order = CONSTANT
family = MONOMIAL_VEC
[]
[AuxKernels/velocity]
type = DarcyVelocity
variable = velocity
execute_on = timestep_end
pressure = pressure
[]
[Problem]
type = FEProblem
[]
[Executioner]
type = Transient
end_time = 100
dt = 0.25
start_time = -1
solve_type = NEWTON
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
automatic_scaling = true
steady_state_tolerance = 1e-5
steady_state_detection = true
[TimeStepper]
type = FunctionDT
function = 'if(t<0,0.1,0.25)'
[]
[]
[Outputs]
exodus = true
[]
(modules/phase_field/test/tests/grain_tracker_test/grain_tracker_volume_changing.i)
# This simulation predicts GB migration of a 2D copper polycrystal with 100 grains represented with 18 order parameters
# Mesh adaptivity and time step adaptivity are used
# An AuxVariable is used to calculate the grain boundary locations
# Postprocessors are used to record time step and the number of grains
[Mesh]
# Mesh block. Meshes can be read in or automatically generated
type = GeneratedMesh
dim = 2 # Problem dimension
nx = 12 # Number of elements in the x-direction
ny = 12 # Number of elements in the y-direction
xmax = 1000 # maximum x-coordinate of the mesh
ymax = 1000 # maximum y-coordinate of the mesh
elem_type = QUAD4 # Type of elements used in the mesh
uniform_refine = 1 # Initial uniform refinement of the mesh
[]
[GlobalParams]
# Parameters used by several kernels that are defined globally to simplify input file
op_num = 8 # Number of order parameters used
var_name_base = gr # Base name of grains
order = CONSTANT
family = MONOMIAL
[]
[Variables]
# Variable block, where all variables in the simulation are declared
[./PolycrystalVariables]
order = FIRST
family = LAGRANGE
[../]
[]
[UserObjects]
[./voronoi]
type = PolycrystalVoronoi
grain_num = 12 # Number of grains
coloring_algorithm = jp
rand_seed = 15
output_adjacency_matrix = true
[../]
[./grain_tracker]
type = GrainTracker
threshold = 0.2
verbosity_level = 1
connecting_threshold = 0.08
compute_var_to_feature_map = true
compute_halo_maps = true # For displaying HALO fields
polycrystal_ic_uo = voronoi
execute_on = 'initial timestep_end'
[../]
[]
[ICs]
[./PolycrystalICs]
[./PolycrystalColoringIC]
polycrystal_ic_uo = voronoi
[../]
[../]
[]
[AuxVariables]
# Dependent variables
[./bnds]
# Variable used to visualize the grain boundaries in the simulation
order = FIRST
family = LAGRANGE
[../]
[./unique_grains]
[../]
[./var_indices]
[../]
[./ghost_regions]
[../]
[./halos]
[../]
[./halo0]
[../]
[./halo1]
[../]
[./halo2]
[../]
[./halo3]
[../]
[./halo4]
[../]
[./halo5]
[../]
[./halo6]
[../]
[./halo7]
[../]
[./centroids]
order = CONSTANT
family = MONOMIAL
[../]
[]
[Kernels]
# Kernel block, where the kernels defining the residual equations are set up.
[./PolycrystalKernel]
# Custom action creating all necessary kernels for grain growth. All input parameters are up in GlobalParams
[../]
[]
[AuxKernels]
# AuxKernel block, defining the equations used to calculate the auxvars
[./bnds_aux]
# AuxKernel that calculates the GB term
type = BndsCalcAux
variable = bnds
execute_on = 'initial timestep_end'
[../]
[./unique_grains]
type = FeatureFloodCountAux
variable = unique_grains
flood_counter = grain_tracker
field_display = UNIQUE_REGION
execute_on = 'initial timestep_end'
[../]
[./var_indices]
type = FeatureFloodCountAux
variable = var_indices
flood_counter = grain_tracker
field_display = VARIABLE_COLORING
execute_on = 'initial timestep_end'
[../]
[./ghosted_entities]
type = FeatureFloodCountAux
variable = ghost_regions
flood_counter = grain_tracker
field_display = GHOSTED_ENTITIES
execute_on = 'initial timestep_end'
[../]
[./halos]
type = FeatureFloodCountAux
variable = halos
flood_counter = grain_tracker
field_display = HALOS
execute_on = 'initial timestep_end'
[../]
[./halo0]
type = FeatureFloodCountAux
variable = halo0
map_index = 0
field_display = HALOS
flood_counter = grain_tracker
[../]
[./halo1]
type = FeatureFloodCountAux
variable = halo1
map_index = 1
field_display = HALOS
flood_counter = grain_tracker
[../]
[./halo2]
type = FeatureFloodCountAux
variable = halo2
map_index = 2
field_display = HALOS
flood_counter = grain_tracker
[../]
[./halo3]
type = FeatureFloodCountAux
variable = halo3
map_index = 3
field_display = HALOS
flood_counter = grain_tracker
[../]
[./halo4]
type = FeatureFloodCountAux
variable = halo4
map_index = 4
field_display = HALOS
flood_counter = grain_tracker
[../]
[./halo5]
type = FeatureFloodCountAux
variable = halo5
map_index = 5
field_display = HALOS
flood_counter = grain_tracker
[../]
[./halo6]
type = FeatureFloodCountAux
variable = halo6
map_index = 6
field_display = HALOS
flood_counter = grain_tracker
[../]
[./halo7]
type = FeatureFloodCountAux
variable = halo7
map_index = 7
field_display = HALOS
flood_counter = grain_tracker
[../]
[./centroids]
type = FeatureFloodCountAux
variable = centroids
execute_on = timestep_end
field_display = CENTROID
flood_counter = grain_tracker
[../]
[]
[BCs]
# Boundary Condition block
[]
[Materials]
[./CuGrGr]
# Material properties
type = GBEvolution
T = 450 # Constant temperature of the simulation (for mobility calculation)
wGB = 125 # Width of the diffuse GB
GBmob0 = 2.5e-6 # m^4(Js) for copper from schonfelder1997molecular bibtex entry
Q = 0.23 # eV for copper from schonfelder1997molecular bibtex entry
GBenergy = 0.708 # J/m^2 from schonfelder1997molecular bibtex entry
[../]
[]
[Postprocessors]
# Scalar postprocessors
[./dt]
# Outputs the current time step
type = TimestepSize
[../]
[./avg_grain_volumes]
type = AverageGrainVolume
feature_counter = grain_tracker
execute_on = 'initial timestep_end'
[../]
[]
[Executioner]
# Uses newton iteration to solve the problem.
type = Transient # Type of executioner, here it is transient with an adaptive time step
scheme = bdf2 # Type of time integration (2nd order backward euler), defaults to 1st order backward euler
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart -mat_mffd_type'
petsc_options_value = 'hypre boomeramg 101 ds'
l_max_its = 30 # Max number of linear iterations
l_tol = 1e-4 # Relative tolerance for linear solves
nl_max_its = 40 # Max number of nonlinear iterations
nl_rel_tol = 1e-10 # Absolute tolerance for nonlienar solves
start_time = 0.0
num_steps = 15
dt = 300
[]
[Problem]
type = FEProblem
[]
[Outputs]
csv = true
exodus = true
[]
(test/tests/tag/fe-mass-matrix.i)
[Mesh]
[square]
type = GeneratedMeshGenerator
nx = 2
ny = 2
dim = 2
[]
[]
[Variables]
[u]
[]
[]
[AuxVariables]
[mass]
[]
[]
[Kernels]
[diff]
type = Diffusion
variable = u
[]
[mass]
type = MassMatrix
variable = u
matrix_tags = 'mass'
[]
[]
[AuxKernels]
[TagMatrixAux1]
type = TagMatrixAux
variable = mass
v = u
matrix_tag = mass
[]
[]
[BCs]
[left]
type = DirichletBC
variable = u
boundary = left
value = 0
[]
[right]
type = DirichletBC
variable = u
boundary = right
value = 1
[]
[]
[Problem]
type = FEProblem
extra_tag_matrices = 'mass'
[]
[Executioner]
type = Steady
solve_type = 'NEWTON'
[]
[Outputs]
exodus = true
[]
(test/tests/misc/block_boundary_material_check/dgkernel_check_block.i)
[Mesh]
type = GeneratedMesh
dim = 1
[]
[Variables]
[./u]
[../]
[]
[DGKernels]
[./dg]
type = MatDGKernel
mat_prop = 'foo'
variable = u
block = 0
[../]
[]
[Problem]
type = FEProblem
solve = false
kernel_coverage_check = false
[]
[Executioner]
type = Steady
[]
(test/tests/markers/q_point_marker/q_point_marker.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
nz = 0
zmax = 0
elem_type = QUAD4
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = 1
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = 2
value = 1
[../]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
solve_type = PJFNK
[]
[Adaptivity]
[./Markers]
[./marker]
type = QPointMarker
variable = u
[../]
[../]
[]
[Outputs]
exodus = true
[]
(modules/phase_field/test/tests/initial_conditions/MultiSmoothSuperellipsoidIC_3D.i)
[Mesh]
type = GeneratedMesh
dim = 3
nx = 22
ny = 22
nz = 22
xmin = 0
xmax = 100
ymin = 0
ymax = 100
zmin = 0
zmax = 100
elem_type = HEX8
[]
[Variables]
[./c]
order = FIRST
family = LAGRANGE
[../]
[]
[ICs]
[./c]
type = MultiSmoothSuperellipsoidIC
variable = c
invalue = 1.0
outvalue = 0.1
bubspac = '10 5'
numbub = '5 5'
semiaxis_b_variation = '0.25 0.35'
semiaxis_variation_type = uniform
semiaxis_a_variation = '0.2 0.3'
semiaxis_a = '7 5'
semiaxis_c_variation = '0.3 0.5'
semiaxis_b = '10 8'
semiaxis_c = '15 5'
exponent = '2 3'
prevent_overlap = true
check_extremes = true
[../]
[]
[Executioner]
type = Transient
scheme = bdf2
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart -mat_mffd_type'
petsc_options_value = 'hypre boomeramg 31 ds'
l_max_its = 20
l_tol = 1e-4
nl_max_its = 20
nl_rel_tol = 1e-9
nl_abs_tol = 1e-11
start_time = 0.0
num_steps = 1
dt = 100.0
[./Adaptivity]
refine_fraction = .5
[../]
[]
[Outputs]
exodus = true
[]
[Problem]
type = FEProblem
solve = false
[]
(test/tests/geomsearch/patch_update_strategy/never.i)
[Mesh]
type = FileMesh
file = long_range.e
dim = 2
patch_update_strategy = never
displacements = 'disp_x disp_y'
[]
[Variables]
[./u]
block = right
[../]
[]
[AuxVariables]
[./linear_field]
[../]
[./receiver]
# The field to transfer into
[../]
[./disp_x]
[../]
[./disp_y]
[../]
[./elemental_reciever]
order = CONSTANT
family = MONOMIAL
[../]
[]
[Kernels]
[./diff]
type = CoefDiffusion
variable = u
coef = 1
[../]
[./time]
type = TimeDerivative
variable = u
[../]
[]
[AuxKernels]
[./linear_in_y]
# This just gives us something to transfer that varies in y so we can ensure the transfer is working properly...
type = FunctionAux
variable = linear_field
function = y
execute_on = initial
[../]
[./right_to_left]
type = GapValueAux
variable = receiver
paired_variable = linear_field
paired_boundary = rightleft
execute_on = timestep_end
boundary = leftright
[../]
[./y_displacement]
type = FunctionAux
variable = disp_y
function = t
execute_on = 'linear timestep_begin'
block = left
[../]
[./elemental_right_to_left]
type = GapValueAux
variable = elemental_reciever
paired_variable = linear_field
paired_boundary = rightleft
boundary = leftright
[../]
[]
[BCs]
[./top]
type = DirichletBC
variable = u
boundary = righttop
value = 1
[../]
[./bottom]
type = DirichletBC
variable = u
boundary = rightbottom
value = 0
[../]
[]
[Problem]
type = FEProblem
kernel_coverage_check = false
[]
[Executioner]
type = Transient
num_steps = 30
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(test/tests/quadrature/order/order5.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 1
ny = 1
nz = 0
elem_type = QUAD4
[]
[Postprocessors]
[./numsideqps]
type = NumSideQPs
boundary = 0
[../]
[./numelemqps]
type = NumElemQPs
block = 0
[../]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
[./Quadrature]
order = fifth
[]
[]
[Outputs]
execute_on = 'timestep_end'
exodus = false
csv = true
[]
(test/tests/coord_type/coord_type_rz_integrated.i)
[Mesh]
type = GeneratedMesh
nx = 10
xmax = 1
ny = 10
ymax = 1
dim = 2
allow_renumbering = false
coord_type = RZ
[]
[Problem]
type = FEProblem
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Executioner]
type = Steady
solve_type = NEWTON
[]
[Outputs]
[./out]
type = Exodus
[../]
[]
[Kernels]
[./diff_u]
type = Diffusion
variable = u
[../]
[]
[DGKernels]
[./dg_diff]
type = DGDiffusion
variable = u
epsilon = -1
sigma = 6
[../]
[]
[Variables]
[./u]
order = FIRST
family = MONOMIAL
[../]
[]
[BCs]
[./source]
type = DGFunctionDiffusionDirichletBC
variable = u
boundary = 'right'
function = exact_fn
epsilon = -1
sigma = 6
[../]
[./vacuum]
boundary = 'top'
type = VacuumBC
variable = u
[../]
[]
[Functions]
[./exact_fn]
type = ConstantFunction
value = 1
[../]
[]
[ICs]
[./u]
type = ConstantIC
value = 1
variable = u
[../]
[]
(tutorials/darcy_thermo_mech/step01_diffusion/problems/step1.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator # Can generate simple lines, rectangles and rectangular prisms
dim = 2 # Dimension of the mesh
nx = 100 # Number of elements in the x direction
ny = 10 # Number of elements in the y direction
xmax = 0.304 # Length of test chamber
ymax = 0.0257 # Test chamber radius
[]
coord_type = RZ # Axisymmetric RZ
rz_coord_axis = X # Which axis the symmetry is around
[]
[Variables/pressure]
# Adds a Linear Lagrange variable by default
[]
[Kernels/diffusion]
type = ADDiffusion # Laplacian operator using automatic differentiation
variable = pressure # Operate on the "pressure" variable from above
[]
[BCs]
[inlet]
type = DirichletBC # Simple u=value BC
variable = pressure # Variable to be set
boundary = left # Name of a sideset in the mesh
value = 4000 # (Pa) From Figure 2 from paper. First data point for 1mm spheres.
[]
[outlet]
type = DirichletBC
variable = pressure
boundary = right
value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
[]
[]
[Problem]
type = FEProblem # This is the "normal" type of Finite Element Problem in MOOSE
[]
[Executioner]
type = Steady # Steady state problem
solve_type = NEWTON # Perform a Newton solve, uses AD to compute Jacobian terms
petsc_options_iname = '-pc_type -pc_hypre_type' # PETSc option pairs with values below
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true # Output Exodus format
[]
(modules/heat_transfer/test/tests/meshed_gap_thermal_contact/meshed_gap_thermal_contact.i)
[Mesh]
[fmesh]
type = FileMeshGenerator
file = meshed_gap.e
[]
[block0]
type = SubdomainBoundingBoxGenerator
input = fmesh
bottom_left = '.5 -.5 0'
top_right = '.7 .5 0'
block_id = 4
[]
[]
[Variables]
[./temp]
block = '1 3'
initial_condition = 1.0
[../]
[]
[Kernels]
[./hc]
type = HeatConduction
variable = temp
block = '1 3'
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = temp
boundary = 1
value = 1
[../]
[./right]
type = DirichletBC
variable = temp
boundary = 4
value = 2
[../]
[]
[ThermalContact]
[./gap_conductivity]
type = GapHeatTransfer
variable = temp
primary = 2
secondary = 3
emissivity_primary = 0
emissivity_secondary = 0
gap_conductivity = 0.5
[../]
[]
[Materials]
[./hcm]
type = HeatConductionMaterial
block = '1 3'
temp = temp
thermal_conductivity = 1
[../]
[]
[Problem]
type = FEProblem
kernel_coverage_check = false
material_coverage_check = false
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
[./out]
type = Exodus
[../]
[]
(test/tests/multiapps/command_line/parent_common_vector.i)
[Mesh]
type = GeneratedMesh
dim = 1
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
[]
[MultiApps]
active = 'sub_1'
[sub_1]
type = FullSolveMultiApp
positions = '0 0 0
1 1 1'
input_files = 'sub.i'
cli_args = 'Mesh/mesh/type=CartesianMeshGenerator;Mesh/mesh/dim=1;Mesh/mesh/dx="1 2 1";Mesh/mesh/ix="4 3 1"'
[]
[sub_1_split]
type = FullSolveMultiApp
positions = '0 0 0
1 1 1'
input_files = 'sub.i'
cli_args = 'Mesh/mesh/type=CartesianMeshGenerator;Mesh/mesh/dim=1;Mesh/mesh/dx="1 2 1";Mesh/mesh/ix="4 3 1" Mesh/mesh/type=CartesianMeshGenerator;Mesh/mesh/dim=1;Mesh/mesh/dx="1 2 1";Mesh/mesh/ix="4 3 1"'
[]
[sub_2]
type = FullSolveMultiApp
positions = '0 0 0
1 1 1'
input_files = 'sub.i'
cli_args = "Mesh/mesh/type=CartesianMeshGenerator;Mesh/mesh/dim=1;Mesh/mesh/dx='1 2 "
"1';Mesh/mesh/ix='4 3 1'"
[]
[sub_2_split]
type = FullSolveMultiApp
positions = '0 0 0
1 1 1'
input_files = 'sub.i'
cli_args = "Mesh/mesh/type=CartesianMeshGenerator;Mesh/mesh/dim=1;Mesh/mesh/dx='1 2 "
"1';Mesh/mesh/ix='4 3 1' "
"Mesh/mesh/type=CartesianMeshGenerator;Mesh/mesh/dim=1;Mesh/mesh/dx='1 2 "
"1';Mesh/mesh/ix='4 3 1'"
[]
[]
(test/tests/misc/block_user_object_check/coupled_check.i)
[Mesh]
[./generator]
type = GeneratedMeshGenerator
dim = 2
nx = 10
ny = 5
[../]
[./left_block]
type = SubdomainBoundingBoxGenerator
input = generator
block_id = 1
bottom_left = '0 0 0'
top_right = '0.5 1 0'
[../]
[./right_block]
type = SubdomainBoundingBoxGenerator
input = left_block
block_id = 2
bottom_left = '0.5 0 0'
top_right = '1 1 0'
[../]
[]
[Variables]
[./var_0]
[../]
[./var_1]
block = 1
initial_condition = 100
[../]
[./var_2]
block = 2
initial_condition = 200
[../]
[]
[Kernels]
[./obj]
type = CoupledConvection
variable = var_0
velocity_vector = var_1
#block = 1 # this is being tested
[../]
[]
[Problem]
type = FEProblem
kernel_coverage_check = true
solve = false
[]
[Executioner]
type = Steady
[]
(test/tests/userobjects/function_layered_integral/function_layered_integral.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 2
ny = 20
nz = 2
[]
[Problem]
type = FEProblem
solve = false
[]
[AuxVariables]
[layered_integral]
order = CONSTANT
family = MONOMIAL
[]
[]
[AuxKernels]
[liaux]
type = SpatialUserObjectAux
variable = layered_integral
execute_on = timestep_end
user_object = layered_integral
[]
[]
[UserObjects]
# the results of the layered integral are directly compared against the analytic integral
# of sin(y) from a to b, or cos(a) - cos(b)
[layered_integral]
type = FunctionLayeredIntegral
direction = y
num_layers = 20
function = 'sin(y)'
[]
[]
[VectorPostprocessors]
[li]
type = SpatialUserObjectVectorPostprocessor
userobject = layered_integral
[]
[]
[Executioner]
type = Steady
[]
[Outputs]
exodus = true
[]
(test/tests/functions/image_function/image.i)
[Mesh]
type = GeneratedMesh
dim = 3
nx = 10
ny = 10
nz = 10
[]
[Adaptivity]
max_h_level = 5
initial_steps = 5
initial_marker = marker
[Indicators]
[indicator]
type = GradientJumpIndicator
variable = u
[]
[]
[Markers]
[marker]
type = ErrorFractionMarker
indicator = indicator
refine = 0.9
[]
[]
[]
[Variables]
[u]
[]
[]
[Functions]
[image_func]
type = ImageFunction
file = stack/test_00.png
[]
[]
[BCs]
[left]
type = DirichletBC
variable = u
boundary = left
value = 0
[]
[right]
type = DirichletBC
variable = u
boundary = right
value = 1
[]
[]
[ICs]
[u_ic]
type = FunctionIC
function = image_func
variable = u
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 1
dt = 0.1
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(test/tests/functions/image_function/image_3d.i)
[Mesh]
type = GeneratedMesh
dim = 3
nx = 20
ny = 20
nz = 20
[]
[Variables]
[u]
[]
[]
[Functions]
[image_func]
type = ImageFunction
file_base = stack/test
file_suffix = png
[]
[]
[ICs]
[u_ic]
type = FunctionIC
function = image_func
variable = u
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 1
dt = 0.1
[]
[Outputs]
exodus = true
[]
(modules/misc/test/tests/sensor_postprocessor/transient_general_sensor.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 10
ny = 10
[]
coord_type = RZ
rz_coord_axis = X
[]
[Variables]
[temperature]
initial_condition = 600 # Start at room temperature
[]
[]
[Kernels]
[heat_conduction]
type = ADMatDiffusion
variable = temperature
diffusivity = thermal_conductivity
[]
[heat_conduction_time_derivative]
type = ADTimeDerivative
variable = temperature
[]
[]
[BCs]
[inlet_temperature]
type = DirichletBC
variable = temperature
boundary = left
value = 600 # (K)
[]
[outlet_temperature]
type = DirichletBC
variable = temperature
boundary = right
value = 602 # (K)
[]
[]
[Materials]
[steel]
type = ADGenericConstantMaterial
prop_names = 'thermal_conductivity specific_heat density'
prop_values = '18 0.466 80' # W/m*K, J/kg-K, kg/m^3 @ 296K
[]
[]
[Problem]
type = FEProblem
[]
[Postprocessors]
[input_signal_pp]
type = ElementAverageValue
variable = temperature
#execute_on = 'initial timestep_begin'
[]
[general_sensor_pp]
type = GeneralSensorPostprocessor
#execute_on = 'initial timestep_begin'
input_signal = input_signal_pp
noise_std_dev_function = '0'
# Test was created before delay function worked as expected
delay_function = '0'
drift_function = '0.2'
efficiency_function = '0.8'
signalToNoise_function = '1'
uncertainty_std_dev_function = '0'
R_function = '1'
proportional_weight = 1
integral_weight = 0
seed = 2
[]
[]
[Executioner]
type = Transient
line_search = none
dt = 0.1
num_steps = 100
nl_rel_tol = 1e-02
nl_abs_tol = 1e-8
solve_type = NEWTON
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
csv = true
[]
(modules/phase_field/test/tests/initial_conditions/PolycrystalVoronoiIC_periodic.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 85
ny = 85
nz = 0
xmax = 250
ymax = 250
zmax = 0
elem_type = QUAD4
[]
[GlobalParams]
op_num = 5
grain_num = 5
var_name_base = gr
int_width = 10
[]
[Variables]
[PolycrystalVariables]
[]
[]
[ICs]
[PolycrystalICs]
[PolycrystalColoringIC]
polycrystal_ic_uo = voronoi
[]
[]
[bnds]
type = BndsCalcIC
variable = bnds
[]
[]
[AuxVariables]
[bnds]
order = FIRST
family = LAGRANGE
[]
[]
[UserObjects]
[voronoi]
type = PolycrystalVoronoi
rand_seed = 10
use_kdtree = true
point_patch_size = 1
grain_patch_size = 10
[]
[]
[BCs]
[Periodic]
[all]
auto_direction = 'x y'
[]
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 0
[]
[Outputs]
exodus = true
[]
(test/tests/kokkos/tag/kokkos_2d_diffusion_tag_vector.i)
[Mesh]
[square]
type = GeneratedMeshGenerator
nx = 2
ny = 2
dim = 2
[]
[]
[Variables]
[u]
order = FIRST
family = LAGRANGE
[]
[]
[AuxVariables]
[tag_variable1]
order = FIRST
family = LAGRANGE
[]
[tag_variable2]
order = FIRST
family = LAGRANGE
[]
[]
[KokkosKernels]
[diff]
type = KokkosDiffusion
variable = u
extra_vector_tags = 'vec_tag1 vec_tag2'
[]
[]
[KokkosAuxKernels]
[TagVectorAux1]
type = KokkosTagVectorAux
variable = tag_variable1
v = u
vector_tag = vec_tag1
[]
[TagVectorAux2]
type = KokkosTagVectorAux
variable = tag_variable2
v = u
vector_tag = vec_tag2
[]
[]
[KokkosBCs]
[left]
type = KokkosDirichletBC
variable = u
boundary = 3
value = 0
preset = false
extra_vector_tags = vec_tag1
[]
[right]
type = KokkosDirichletBC
variable = u
boundary = 1
value = 1
preset = false
extra_vector_tags = vec_tag2
[]
[]
[Problem]
type = FEProblem
extra_tag_vectors = 'vec_tag1 vec_tag2'
[]
[Executioner]
type = Steady
solve_type = 'NEWTON'
[]
[Outputs]
exodus = true
[]
(modules/phase_field/test/tests/initial_conditions/HexPolycrystalIC_3D_columnar.i)
[Mesh]
type = GeneratedMesh
dim = 3
nx = 20
ny = 20
nz = 1
xmax = 1
ymax = 1
zmax = 0.1
[]
[GlobalParams]
op_num = 4
grain_num = 4
var_name_base = gr
int_width = 0.05
[]
[Variables]
[PolycrystalVariables]
[]
[]
[ICs]
[PolycrystalICs]
[PolycrystalColoringIC]
polycrystal_ic_uo = hex_ic
[]
[]
[bnds]
type = BndsCalcIC
variable = bnds
[]
[]
[AuxVariables]
[bnds]
order = FIRST
family = LAGRANGE
[]
[]
[UserObjects]
[hex_ic]
type = PolycrystalHex
coloring_algorithm = bt
columnar_3D = true
[]
[]
[BCs]
[Periodic]
[all]
auto_direction = 'x y'
[]
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 0
[]
[Outputs]
exodus = true
[]
(test/tests/functions/image_function/image_2d_elemental.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 20
ny = 20
[]
[Variables]
[u]
order = CONSTANT
family = MONOMIAL
[]
[]
[Functions]
[image_func]
type = ImageFunction
file_base = stack/test
file_suffix = png
# file range is parsed as a vector of unsigned. If it only has 1
# entry, only a single file is read.
file_range = '0'
[]
[]
[ICs]
[u_ic]
type = FunctionIC
function = image_func
variable = u
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
[]
[Outputs]
exodus = true
[]
(tutorials/darcy_thermo_mech/step07_adaptivity/problems/step7d_adapt_blocks.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 40
ny = 4
xmax = 0.304 # Length of test chamber
ymax = 0.0257 # Test chamber radius
[]
[bottom]
type = SubdomainBoundingBoxGenerator
input = gmg
location = inside
bottom_left = '0 0 0'
top_right = '0.304 0.01285 0'
block_id = 1
[]
coord_type = RZ
rz_coord_axis = X
uniform_refine = 3
[]
[Variables]
[pressure]
[]
[temperature]
initial_condition = 300 # Start at room temperature
[]
[]
[Kernels]
[darcy_pressure]
type = DarcyPressure
variable = pressure
[]
[heat_conduction]
type = ADHeatConduction
variable = temperature
[]
[heat_conduction_time_derivative]
type = ADHeatConductionTimeDerivative
variable = temperature
[]
[heat_convection]
type = DarcyAdvection
variable = temperature
pressure = pressure
[]
[]
[BCs]
[inlet_temperature]
type = FunctionDirichletBC
variable = temperature
boundary = left
function = 'if(t<0,350+50*t,350)'
[]
[outlet_temperature]
type = HeatConductionOutflow
variable = temperature
boundary = right
[]
[inlet]
type = DirichletBC
variable = pressure
boundary = left
value = 4000 # (Pa) From Figure 2 from paper. First data point for 1mm spheres.
[]
[outlet]
type = DirichletBC
variable = pressure
boundary = right
value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
[]
[]
[Materials]
viscosity_file = data/water_viscosity.csv
density_file = data/water_density.csv
thermal_conductivity_file = data/water_thermal_conductivity.csv
specific_heat_file = data/water_specific_heat.csv
[column_bottom]
type = PackedColumn
block = 1
radius = 1.15
temperature = temperature
fluid_viscosity_file = ${viscosity_file}
fluid_density_file = ${density_file}
fluid_thermal_conductivity_file = ${thermal_conductivity_file}
fluid_specific_heat_file = ${specific_heat_file}
[]
[column_top]
type = PackedColumn
block = 0
radius = 1
temperature = temperature
porosity = '0.25952 + 0.7*x/0.304'
fluid_viscosity_file = ${viscosity_file}
fluid_density_file = ${density_file}
fluid_thermal_conductivity_file = ${thermal_conductivity_file}
fluid_specific_heat_file = ${specific_heat_file}
[]
[]
[AuxVariables/velocity]
order = CONSTANT
family = MONOMIAL_VEC
[]
[AuxKernels/velocity]
type = DarcyVelocity
variable = velocity
execute_on = timestep_end
pressure = pressure
[]
[Problem]
type = FEProblem
[]
[Executioner]
type = Transient
end_time = 100
dt = 0.25
start_time = -1
solve_type = NEWTON
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
automatic_scaling = true
steady_state_tolerance = 1e-5
steady_state_detection = true
[TimeStepper]
type = FunctionDT
function = 'if(t<0,0.1,0.25)'
[]
[]
[Outputs/out]
type = Exodus
output_material_properties = true
[]
[Adaptivity]
marker = error_frac
max_h_level = 3
[Indicators/temperature_jump]
type = GradientJumpIndicator
variable = temperature
scale_by_flux_faces = true
[]
[Markers/error_frac]
type = ErrorFractionMarker
coarsen = 0.025
indicator = temperature_jump
refine = 0.9
[]
[]
(test/tests/functions/image_function/subset.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
uniform_refine = 2
[]
[Variables]
[u]
[]
[]
[Functions]
[image_func]
type = ImageFunction
file_base = stack/test
file_suffix = png
file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
origin = '0.25 0.25 0'
dimensions = '0.5 0.5 0'
[]
[]
[ICs]
[u_ic]
type = FunctionIC
function = image_func
variable = u
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 1
dt = 0.1
[]
[Outputs]
exodus = true
[]
(test/tests/transfers/multiapp_copy_transfer/second_lagrange_to_sub/sub.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
elem_type = QUAD9
[]
[Variables]
[./u]
order = SECOND
family = LAGRANGE
[../]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
[]
[Outputs]
exodus = true
[]
(test/tests/transfers/multiapp_copy_transfer/linear_lagrange_from_sub/parent.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
[]
[Variables]
[./u]
[../]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 1
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[MultiApps]
[./sub]
type = FullSolveMultiApp
input_files = sub.i
execute_on = initial
[../]
[]
[Transfers]
[./from_sub]
type = MultiAppCopyTransfer
source_variable = u
variable = u
from_multi_app = sub
[../]
[]
[Outputs]
exodus = true
[]
(modules/stochastic_tools/test/tests/surrogates/pod_rb/boundary/sub.i)
[Problem]
type = FEProblem
extra_tag_vectors = 'diff react bodyf dir_src dir_imp'
[]
[Mesh]
type = GeneratedMesh
dim = 1
nx = 15
xmax = 10
[]
[Variables]
[u]
[]
[]
[Kernels]
[diffusion]
type = MatDiffusion
variable = u
diffusivity = k
extra_vector_tags = 'diff'
[]
[reaction]
type = MaterialReaction
variable = u
coefficient = alpha
extra_vector_tags = 'react'
[]
[source]
type = BodyForce
variable = u
value = 1.0
extra_vector_tags = 'bodyf'
[]
[]
[Materials]
[k]
type = GenericConstantMaterial
prop_names = k
prop_values = 1.0
[]
[alpha]
type = GenericConstantMaterial
prop_names = alpha
prop_values = 1.0
[]
[]
[BCs]
[dummy_1]
type = DirichletBC
variable = u
boundary = left
value = 0
extra_vector_tags = 'dir_imp'
[]
[dummy_2]
type = DirichletBCModifier
variable = u
boundary = left
value = 1
extra_vector_tags = 'dir_src'
[]
[left]
type = DirichletBC
variable = u
boundary = left
value = 1
[]
[right]
type = DirichletBC
variable = u
boundary = right
value = 0
[]
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Controls]
[stochastic]
type = SamplerReceiver
[]
[]
(tutorials/tutorial01_app_development/step06_input_params/problems/pressure_diffusion.i)
[Mesh]
type = GeneratedMesh # Can generate simple lines, rectangles and rectangular prisms
dim = 2 # Dimension of the mesh
nx = 100 # Number of elements in the x direction
ny = 10 # Number of elements in the y direction
xmax = 0.304 # Length of test chamber
ymax = 0.0257 # Test chamber radius
rz_coord_axis = X # Which axis the symmetry is around
coord_type = RZ # Axisymmetric RZ
[]
[Problem]
type = FEProblem # This is the "normal" type of Finite Element Problem in MOOSE
[]
[Variables]
[pressure]
# Adds a Linear Lagrange variable by default
[]
[]
[Kernels]
[diffusion]
type = DarcyPressure # Zero-gravity, divergence-free form of Darcy's law
variable = pressure # Operate on the "pressure" variable from above
permeability = 0.8451e-09 # (m^2) assumed permeability of the porous medium
[]
[]
[BCs]
[inlet]
type = ADDirichletBC # Simple u=value BC
variable = pressure # Variable to be set
boundary = left # Name of a sideset in the mesh
value = 4000 # (Pa) From Figure 2 from paper. First data point for 1mm spheres.
[]
[outlet]
type = ADDirichletBC
variable = pressure
boundary = right
value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
[]
[]
[Executioner]
type = Steady # Steady state problem
solve_type = NEWTON # Perform a Newton solve
# Set PETSc parameters to optimize solver efficiency
petsc_options_iname = '-pc_type -pc_hypre_type' # PETSc option pairs with values below
petsc_options_value = ' hypre boomeramg'
[]
[Outputs]
exodus = true # Output Exodus format
[]
(tutorials/darcy_thermo_mech/step11_action/problems/step11.i)
[GlobalParams]
displacements = 'disp_r disp_z'
[]
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 10
ny = 200
ymax = 0.304 # Length of test chamber
xmax = 0.0257 # Test chamber radius
[]
coord_type = RZ
[]
[Variables]
[pressure]
[]
[temperature]
initial_condition = 300 # Start at room temperature
[]
[]
[DarcyThermoMech]
[]
[Physics/SolidMechanics/QuasiStatic]
[all]
# This block adds all of the proper Kernels, strain calculators, and Variables
# for SolidMechanics in the correct coordinate system (autodetected)
add_variables = true
strain = FINITE
eigenstrain_names = eigenstrain
use_automatic_differentiation = true
generate_output = 'vonmises_stress elastic_strain_xx elastic_strain_yy strain_xx strain_yy'
[]
[]
[BCs]
[inlet_temperature]
type = FunctionDirichletBC
variable = temperature
boundary = bottom
function = 'if(t<0,350+50*t,350)'
[]
[outlet_temperature]
type = HeatConductionOutflow
variable = temperature
boundary = top
[]
[inlet]
type = DirichletBC
variable = pressure
boundary = bottom
value = 4000 # (Pa) From Figure 2 from paper. First data point for 1mm spheres.
[]
[outlet]
type = DirichletBC
variable = pressure
boundary = top
value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
[]
[hold_inlet]
type = DirichletBC
variable = disp_z
boundary = bottom
value = 0
[]
[hold_center]
type = DirichletBC
variable = disp_r
boundary = left
value = 0
[]
[hold_outside]
type = DirichletBC
variable = disp_r
boundary = right
value = 0
[]
[]
[Materials]
viscosity_file = data/water_viscosity.csv
density_file = data/water_density.csv
thermal_conductivity_file = data/water_thermal_conductivity.csv
specific_heat_file = data/water_specific_heat.csv
thermal_expansion_file = data/water_thermal_expansion.csv
[column]
type = PackedColumn
block = 0
temperature = temperature
radius = 1.15
fluid_viscosity_file = ${viscosity_file}
fluid_density_file = ${density_file}
fluid_thermal_conductivity_file = ${thermal_conductivity_file}
fluid_specific_heat_file = ${specific_heat_file}
fluid_thermal_expansion_file = ${thermal_expansion_file}
[]
[elasticity_tensor]
type = ADComputeIsotropicElasticityTensor
youngs_modulus = 200e9 # (Pa) from wikipedia
poissons_ratio = .3 # from wikipedia
[]
[elastic_stress]
type = ADComputeFiniteStrainElasticStress
[]
[thermal_strain]
type = ADComputeThermalExpansionEigenstrain
stress_free_temperature = 300
eigenstrain_name = eigenstrain
temperature = temperature
thermal_expansion_coeff = 1e-5
[]
[]
[Postprocessors/average_temperature]
type = ElementAverageValue
variable = temperature
[]
[Problem]
type = FEProblem
[]
[Executioner]
type = Transient
end_time = 200
dt = 0.25
start_time = -1
solve_type = PJFNK
petsc_options_iname = '-pc_type'
petsc_options_value = 'lu'
line_search = none
automatic_scaling = true
compute_scaling_once = false
steady_state_tolerance = 1e-7
steady_state_detection = true
[TimeStepper]
type = FunctionDT
function = 'if(t<0,0.1,0.25)'
[]
[]
[Outputs/out]
type = Exodus
elemental_as_nodal = true
[]
(test/tests/functions/image_function/error/check_error.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 20
ny = 20
[]
[Variables]
[u]
[]
[]
[Functions]
[tif]
type = ImageFunction
file_base = stack/test
file_suffix = png
file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
[]
[]
[ICs]
[u_ic]
type = FunctionIC
function = tif
variable = u
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 1
dt = 0.1
[]
(test/tests/transfers/multiapp_userobject_transfer/tosub_displaced_sub.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 4
ny = 8
xmax = 0.1
ymax = 0.5
displacements = 'disp_x disp_y'
coord_type = rz
[]
[Variables]
[./u]
initial_condition = 1
[../]
[]
[AuxVariables]
[./multi_layered_average]
[../]
[./element_multi_layered_average]
order = CONSTANT
family = MONOMIAL
[../]
[./disp_x]
initial_condition = 0.0
[../]
[./disp_y]
initial_condition = 0.5
[../]
[]
[Functions]
[./axial_force]
type = ParsedFunction
expression = 1000*y
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[./td]
type = TimeDerivative
variable = u
[../]
[./force]
type = BodyForce
variable = u
function = axial_force
[../]
[]
[BCs]
[./right]
type = DirichletBC
variable = u
boundary = right
value = 1
[../]
[]
[Executioner]
type = Transient
num_steps = 1
dt = 0.001
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
[Problem]
type = FEProblem
[]
(test/tests/executioners/pp_binding/pp_binding_check.i)
[Mesh]
type = GeneratedMesh
dim = 1
[]
[Variables]
[./u]
[../]
[]
[Postprocessors]
[./ndofs]
type = NumDOFs
[../]
[]
[Problem]
type = FEProblem
solve = false
kernel_coverage_check = false
[]
[Executioner]
type = PPBindingSteady
postprocessor = ndofs
[]
(test/tests/postprocessors/nodal_extreme_value/nodal_proxy_extreme_value.i)
[Problem]
type = FEProblem
solve = false
[]
[Mesh]
type = GeneratedMesh
dim = 2
nx = 40
ny = 40
[]
[AuxVariables]
[u]
[]
[w]
[]
[v_x]
[]
[v_y]
[]
[]
[AuxKernels]
[u]
type = FunctionAux
variable = u
function = u
[]
[w]
type = FunctionAux
variable = w
function = w
[]
[v_x]
type = FunctionAux
variable = v_x
function = v_x
[]
[v_y]
type = FunctionAux
variable = v_y
function = v_y
[]
[]
[Functions]
[u] # reaches a maximum value at (0.5, 0.6)
type = ParsedFunction
expression = 'sin(pi*x)*sin(pi*y/1.2)'
[]
[w] # reaches a minium expression at (0.7, 0.8)
type = ParsedFunction
expression = '-sin(pi*x/1.4)*sin(pi*y/1.6)'
[]
[v_x]
type = ParsedFunction
expression = 'x'
[]
[v_y]
type = ParsedFunction
expression = 'y'
[]
[]
[Postprocessors]
# because we set v_x and v_y equal to the x and y coordinates, these two postprocessors
# should just return the point at which u reaches a maximum value
[max_v_from_proxy_x]
type = NodalExtremeValue
variable = v_x
proxy_variable = u
value_type = max
[]
[max_v_from_proxy_y]
type = NodalExtremeValue
variable = v_y
proxy_variable = u
value_type = max
[]
# because we set v_x and v_y equal to the x and y coordinates, these two postprocessors
# should just return the point at which w reaches a minimum value
[min_v_from_proxy_x]
type = NodalExtremeValue
variable = v_x
proxy_variable = w
value_type = min
[]
[min_v_from_proxy_y]
type = NodalExtremeValue
variable = v_y
proxy_variable = w
value_type = min
[]
[]
[Executioner]
type = Steady
[]
[Outputs]
exodus = true
csv = true
[]
(test/tests/transfers/multiapp_copy_transfer/constant_monomial_from_sub/parent.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
[]
[Variables]
[./u]
family = MONOMIAL
order = CONSTANT
[../]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 1
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[MultiApps]
[./sub]
type = FullSolveMultiApp
input_files = sub.i
execute_on = initial
[../]
[]
[Transfers]
[./from_sub]
type = MultiAppCopyTransfer
source_variable = aux
variable = u
from_multi_app = sub
[../]
[]
[Outputs]
exodus = true
[]
(tutorials/darcy_thermo_mech/step01_diffusion/tests/kernels/simple_diffusion/simple_diffusion.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 10
ny = 10
[]
coord_type = RZ
rz_coord_axis = X
[]
[Variables]
[u]
[]
[]
[Kernels]
[diff]
type = Diffusion
variable = u
[]
[]
[BCs]
[left]
type = DirichletBC
variable = u
boundary = left
value = 0
[]
[right]
type = DirichletBC
variable = u
boundary = right
value = 1
[]
[]
[Problem]
type = FEProblem
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(tutorials/darcy_thermo_mech/step03_darcy_material/tests/kernels/darcy_pressure/darcy_pressure.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 100
ny = 10
xmax = 0.304 # Length of test chamber
ymax = 0.0257 # Test chamber radius
[]
coord_type = RZ
rz_coord_axis = X
[]
[Variables]
[pressure]
[]
[]
[Kernels]
[darcy_pressure]
type = DarcyPressure
variable = pressure
[]
[]
[BCs]
[inlet]
type = DirichletBC
variable = pressure
boundary = left
value = 4000 # (Pa) From Figure 2 from paper. First dot for 1mm spheres.
[]
[outlet]
type = DirichletBC
variable = pressure
boundary = right
value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
[]
[]
[Materials]
[pressure]
type = ADGenericConstantMaterial
prop_values = '0.8451e-9 7.98e-4'
prop_names = 'permeability viscosity'
[]
[]
[Problem]
type = FEProblem
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(test/tests/materials/generic_materials/generic_constant_std_vector_real.i)
[Mesh]
type = GeneratedMesh
dim = 1
[]
[Problem]
type = FEProblem
solve = false
[]
[Materials]
[vector]
type = GenericConstantStdVectorMaterial
prop_names = 'constant_3 constant_2'
prop_values = '1 2 3; 0 1'
outputs = all
[]
[]
[Executioner]
type = Transient
num_steps = 1
[]
[Outputs]
exodus = true
[]
(modules/contact/test/tests/verification/patch_tests/ring_2/ring2_mu_0_2_pen.i)
[GlobalParams]
volumetric_locking_correction = true
displacements = 'disp_x disp_y'
[]
[Mesh]
file = ring2_mesh.e
coord_type = RZ
[]
[Problem]
type = FEProblem
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[]
[AuxVariables]
[./stress_xx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zz]
order = CONSTANT
family = MONOMIAL
[../]
[./penetration]
[../]
[./saved_x]
[../]
[./saved_y]
[../]
[./diag_saved_x]
[../]
[./diag_saved_y]
[../]
[./inc_slip_x]
[../]
[./inc_slip_y]
[../]
[./accum_slip_x]
[../]
[./accum_slip_y]
[../]
[./tang_force_x]
[../]
[./tang_force_y]
[../]
[]
[Kernels]
[./TensorMechanics]
use_displaced_mesh = true
save_in = 'saved_x saved_y'
[../]
[]
[AuxKernels]
[./stress_xx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xx
index_i = 0
index_j = 0
execute_on = timestep_end
[../]
[./stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
execute_on = timestep_end
[../]
[./stress_xy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xy
index_i = 0
index_j = 1
execute_on = timestep_end
[../]
[./stress_zz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zz
index_i = 2
index_j = 2
execute_on = timestep_end
[../]
[./inc_slip_x]
type = PenetrationAux
variable = inc_slip_x
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./inc_slip_y]
type = PenetrationAux
variable = inc_slip_y
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./accum_slip_x]
type = PenetrationAux
variable = accum_slip_x
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./accum_slip_y]
type = PenetrationAux
variable = accum_slip_y
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./penetration]
type = PenetrationAux
variable = penetration
boundary = 3
paired_boundary = 4
[../]
[./tang_force_x]
type = PenetrationAux
variable = tang_force_x
quantity = tangential_force_x
boundary = 3
paired_boundary = 4
[../]
[./tang_force_y]
type = PenetrationAux
variable = tang_force_y
quantity = tangential_force_y
boundary = 3
paired_boundary = 4
[../]
[] # AuxKernels
[Postprocessors]
[./bot_react_x]
type = NodalSum
variable = saved_x
boundary = 1
[../]
[./bot_react_y]
type = NodalSum
variable = saved_y
boundary = 1
[../]
[./top_react_x]
type = NodalSum
variable = saved_x
boundary = 5
[../]
[./top_react_y]
type = NodalSum
variable = saved_y
boundary = 5
[../]
[./ref_resid_x]
type = NodalL2Norm
execute_on = timestep_end
variable = saved_x
[../]
[./ref_resid_y]
type = NodalL2Norm
execute_on = timestep_end
variable = saved_y
[../]
[./sigma_yy]
type = ElementAverageValue
variable = stress_yy
[../]
[./sigma_zz]
type = ElementAverageValue
variable = stress_zz
[../]
[./disp_x5]
type = NodalVariableValue
nodeid = 4
variable = disp_x
[../]
[./disp_x9]
type = NodalVariableValue
nodeid = 8
variable = disp_x
[../]
[./disp_y5]
type = NodalVariableValue
nodeid = 4
variable = disp_y
[../]
[./disp_y9]
type = NodalVariableValue
nodeid = 8
variable = disp_y
[../]
[./_dt]
type = TimestepSize
[../]
[./num_lin_it]
type = NumLinearIterations
[../]
[./num_nonlin_it]
type = NumNonlinearIterations
[../]
[]
[BCs]
[./bot_y]
type = DirichletBC
variable = disp_y
boundary = 1
value = 0.0
[../]
[./top_press]
type = Pressure
variable = disp_y
boundary = 5
factor = 109.89
[../]
[]
[Materials]
[./bot_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '1'
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./bot_strain]
type = ComputeAxisymmetricRZIncrementalStrain
block = '1'
[../]
[./bot_stress]
type = ComputeFiniteStrainElasticStress
block = '1'
[../]
[./top_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '2'
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./top_strain]
type = ComputeAxisymmetricRZIncrementalStrain
block = '2'
[../]
[./top_stress]
type = ComputeFiniteStrainElasticStress
block = '2'
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_factor_mat_solver_type'
petsc_options_value = 'lu superlu_dist'
line_search = 'none'
nl_abs_tol = 1e-10
nl_rel_tol = 1e-8
l_max_its = 50
nl_max_its = 100
dt = 1.0
end_time = 1.0
num_steps = 10
dtmin = 1.0
l_tol = 1e-5
[]
[VectorPostprocessors]
[./x_disp]
type = NodalValueSampler
variable = disp_x
boundary = '1 3 4 5'
sort_by = x
[../]
[./cont_press]
type = NodalValueSampler
variable = contact_pressure
boundary = '3'
sort_by = x
[../]
[]
[Outputs]
file_base = ring2_mu_0_2_pen_out
print_linear_residuals = true
perf_graph = true
[./exodus]
type = Exodus
elemental_as_nodal = true
[../]
[./console]
type = Console
max_rows = 5
[../]
[./chkfile]
type = CSV
file_base = ring2_mu_0_2_pen_check
show = 'bot_react_x bot_react_y disp_x5 disp_y5 disp_x9 disp_y9 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
execute_vector_postprocessors_on = timestep_end
[../]
[./outfile]
type = CSV
delimiter = ' '
execute_vector_postprocessors_on = none
[../]
[]
[Contact]
[./leftright]
secondary = 3
primary = 4
model = coulomb
formulation = penalty
normalize_penalty = true
friction_coefficient = 0.2
tangential_tolerance = 1e-3
penalty = 1e+9
[../]
[]
(modules/phase_field/test/tests/grain_tracker_test/grain_tracker_remapping_test.i)
# This simulation predicts GB migration of a 2D copper polycrystal with 100 grains represented with 18 order parameters
# Mesh adaptivity and time step adaptivity are used
# An AuxVariable is used to calculate the grain boundary locations
# Postprocessors are used to record time step and the number of grains
[Mesh]
# Mesh block. Meshes can be read in or automatically generated
type = GeneratedMesh
dim = 2 # Problem dimension
nx = 12 # Number of elements in the x-direction
ny = 12 # Number of elements in the y-direction
xmax = 1000 # maximum x-coordinate of the mesh
ymax = 1000 # maximum y-coordinate of the mesh
elem_type = QUAD4 # Type of elements used in the mesh
uniform_refine = 1 # Initial uniform refinement of the mesh
[]
[GlobalParams]
# Parameters used by several kernels that are defined globally to simplify input file
op_num = 8 # Number of order parameters used
var_name_base = gr # Base name of grains
order = CONSTANT
family = MONOMIAL
[]
[Variables]
# Variable block, where all variables in the simulation are declared
[./PolycrystalVariables]
order = FIRST
family = LAGRANGE
[../]
[]
[UserObjects]
[./voronoi]
type = PolycrystalVoronoi
grain_num = 12 # Number of grains
coloring_algorithm = jp
rand_seed = 10
output_adjacency_matrix = true
[../]
[./grain_tracker]
type = GrainTracker
threshold = 0.2
verbosity_level = 1
connecting_threshold = 0.08
flood_entity_type = ELEMENTAL
compute_halo_maps = true # For displaying HALO fields
polycrystal_ic_uo = voronoi
error_on_grain_creation = true
execute_on = 'initial timestep_end'
[../]
[]
[ICs]
[./PolycrystalICs]
[./PolycrystalColoringIC]
polycrystal_ic_uo = voronoi
[../]
[../]
[]
[AuxVariables]
# Dependent variables
[./bnds]
# Variable used to visualize the grain boundaries in the simulation
order = FIRST
family = LAGRANGE
[../]
[./unique_grains]
[../]
[./var_indices]
[../]
[./ghost_regions]
[../]
[./halos]
[../]
[./halo0]
[../]
[./halo1]
[../]
[./halo2]
[../]
[./halo3]
[../]
[./halo4]
[../]
[./halo5]
[../]
[./halo6]
[../]
[./halo7]
[../]
[./centroids]
order = CONSTANT
family = MONOMIAL
[../]
[./proc_id]
[../]
[]
[Kernels]
# Kernel block, where the kernels defining the residual equations are set up.
[./PolycrystalKernel]
# Custom action creating all necessary kernels for grain growth. All input parameters are up in GlobalParams
[../]
[]
[AuxKernels]
# AuxKernel block, defining the equations used to calculate the auxvars
[./bnds_aux]
# AuxKernel that calculates the GB term
type = BndsCalcAux
variable = bnds
execute_on = 'initial timestep_end'
[../]
[./unique_grains]
type = FeatureFloodCountAux
variable = unique_grains
flood_counter = grain_tracker
field_display = UNIQUE_REGION
execute_on = 'initial timestep_end'
[../]
[./var_indices]
type = FeatureFloodCountAux
variable = var_indices
flood_counter = grain_tracker
field_display = VARIABLE_COLORING
execute_on = 'initial timestep_end'
[../]
[./ghosted_entities]
type = FeatureFloodCountAux
variable = ghost_regions
flood_counter = grain_tracker
field_display = GHOSTED_ENTITIES
execute_on = 'initial timestep_end'
[../]
[./halos]
type = FeatureFloodCountAux
variable = halos
flood_counter = grain_tracker
field_display = HALOS
execute_on = 'initial timestep_end'
[../]
[./halo0]
type = FeatureFloodCountAux
variable = halo0
map_index = 0
field_display = HALOS
flood_counter = grain_tracker
[../]
[./halo1]
type = FeatureFloodCountAux
variable = halo1
map_index = 1
field_display = HALOS
flood_counter = grain_tracker
[../]
[./halo2]
type = FeatureFloodCountAux
variable = halo2
map_index = 2
field_display = HALOS
flood_counter = grain_tracker
[../]
[./halo3]
type = FeatureFloodCountAux
variable = halo3
map_index = 3
field_display = HALOS
flood_counter = grain_tracker
[../]
[./halo4]
type = FeatureFloodCountAux
variable = halo4
map_index = 4
field_display = HALOS
flood_counter = grain_tracker
[../]
[./halo5]
type = FeatureFloodCountAux
variable = halo5
map_index = 5
field_display = HALOS
flood_counter = grain_tracker
[../]
[./halo6]
type = FeatureFloodCountAux
variable = halo6
map_index = 6
field_display = HALOS
flood_counter = grain_tracker
[../]
[./halo7]
type = FeatureFloodCountAux
variable = halo7
map_index = 7
field_display = HALOS
flood_counter = grain_tracker
[../]
[./centroids]
type = FeatureFloodCountAux
variable = centroids
execute_on = timestep_end
field_display = CENTROID
flood_counter = grain_tracker
[../]
[./proc_id]
type = ProcessorIDAux
variable = proc_id
execute_on = initial
[../]
[]
[BCs]
# Boundary Condition block
[]
[Materials]
[./CuGrGr]
# Material properties
type = GBEvolution
T = 450 # Constant temperature of the simulation (for mobility calculation)
wGB = 125 # Width of the diffuse GB
GBmob0 = 2.5e-6 # m^4(Js) for copper from schonfelder1997molecular bibtex entry
Q = 0.23 # eV for copper from schonfelder1997molecular bibtex entry
GBenergy = 0.708 # J/m^2 from schonfelder1997molecular bibtex entry
[../]
[]
[Postprocessors]
# Scalar postprocessors
[./dt]
# Outputs the current time step
type = TimestepSize
[../]
[]
[Executioner]
# Uses newton iteration to solve the problem.
type = Transient # Type of executioner, here it is transient with an adaptive time step
scheme = bdf2 # Type of time integration (2nd order backward euler), defaults to 1st order backward euler
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart -mat_mffd_type'
petsc_options_value = 'hypre boomeramg 101 ds'
l_max_its = 30 # Max number of linear iterations
l_tol = 1e-4 # Relative tolerance for linear solves
nl_max_its = 40 # Max number of nonlinear iterations
nl_rel_tol = 1e-10 # Absolute tolerance for nonlienar solves
start_time = 0.0
num_steps = 15
dt = 300
[]
[Problem]
type = FEProblem
[]
[Outputs]
csv = true
exodus = true
[./pg]
type = PerfGraphOutput
level = 2 # Default is 1
[../]
[]
(test/tests/quadrature/gauss_lobatto/gauss_lobatto.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 1
ny = 1
nz = 0
elem_type = QUAD4
[]
[Postprocessors]
[./num_elem_qps]
type = NumElemQPs
block = 0
[../]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
# In 1D, 5th-order Gauss-Lobatto quadrature has 4 points, so in 2D
# it should have 16.
[./Quadrature]
type = GAUSS_LOBATTO
order = FIFTH
[../]
[]
[Outputs]
execute_on = 'timestep_end'
exodus = false
csv = true
[]
(test/tests/misc/check_error/uo_pps_name_collision_test.i)
[Mesh]
type = GeneratedMesh
dim = 1
xmin = 0
xmax = 1
nx = 5
[]
[Problem]
type = FEProblem
solve = false
[]
[UserObjects]
[ud]
type = MTUserObject
scalar = 2
vector = '9 7 5'
[]
[]
[Executioner]
type = Steady
[]
[Postprocessors]
[ud]
type = NumDOFs
[]
[]
(test/tests/userobjects/shape_element_user_object/shape_side_uo_jac_test.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 2
ny = 2
parallel_type = replicated
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
[../]
[./pot]
[../]
[]
[Kernels]
[]
[BCs]
[./left_pot]
boundary = left
type = ExampleShapeSideIntegratedBC
variable = pot
num_user_object = num_user_object
denom_user_object = denom_user_object
v = u
Vb = 1
[../]
[]
[UserObjects]
[./num_user_object]
type = NumShapeSideUserObject
u = u
boundary = left
execute_on = 'linear nonlinear'
[../]
[./denom_user_object]
type = DenomShapeSideUserObject
u = u
boundary = left
execute_on = 'linear nonlinear'
[../]
[]
[Problem]
type = FEProblem
kernel_coverage_check = false
use_hash_table_matrix_assembly = true
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Executioner]
type = Steady
solve_type = NEWTON
[]
[Outputs]
exodus = true
perf_graph = true
[]
[ICs]
[./u]
type = RandomIC
variable = u
[../]
[./pot]
type = RandomIC
variable = pot
[../]
[]
(tutorials/darcy_thermo_mech/step09_mechanics/problems/step9.i)
[GlobalParams]
displacements = 'disp_r disp_z'
[]
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 10
ny = 200
ymax = 0.304 # Length of test chamber
xmax = 0.0257 # Test chamber radius
[]
[bottom]
type = SubdomainBoundingBoxGenerator
input = gmg
location = inside
bottom_left = '0 0 0'
top_right = '0.01285 0.304 0'
block_id = 1
[]
coord_type = RZ
[]
[Variables]
[pressure]
[]
[temperature]
initial_condition = 300 # Start at room temperature
[]
[]
[Physics/SolidMechanics/QuasiStatic]
[all]
# This block adds all of the proper Kernels, strain calculators, and Variables
# for SolidMechanics in the correct coordinate system (autodetected)
add_variables = true
strain = FINITE
eigenstrain_names = eigenstrain
use_automatic_differentiation = true
generate_output = 'vonmises_stress elastic_strain_xx elastic_strain_yy strain_xx strain_yy'
[]
[]
[Kernels]
[darcy_pressure]
type = DarcyPressure
variable = pressure
[]
[heat_conduction]
type = ADHeatConduction
variable = temperature
[]
[heat_conduction_time_derivative]
type = ADHeatConductionTimeDerivative
variable = temperature
[]
[heat_convection]
type = DarcyAdvection
variable = temperature
pressure = pressure
[]
[]
[BCs]
[inlet_temperature]
type = FunctionDirichletBC
variable = temperature
boundary = bottom
function = 'if(t<0,350+50*t,350)'
[]
[outlet_temperature]
type = HeatConductionOutflow
variable = temperature
boundary = top
[]
[inlet]
type = DirichletBC
variable = pressure
boundary = bottom
value = 4000 # (Pa) From Figure 2 from paper. First data point for 1mm spheres.
[]
[outlet]
type = DirichletBC
variable = pressure
boundary = top
value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
[]
[hold_inlet]
type = DirichletBC
variable = disp_z
boundary = bottom
value = 0
[]
[hold_center]
type = DirichletBC
variable = disp_r
boundary = left
value = 0
[]
[hold_outside]
type = DirichletBC
variable = disp_r
boundary = right
value = 0
[]
[]
[Materials]
viscosity_file = data/water_viscosity.csv
density_file = data/water_density.csv
thermal_conductivity_file = data/water_thermal_conductivity.csv
specific_heat_file = data/water_specific_heat.csv
thermal_expansion_file = data/water_thermal_expansion.csv
[column_top]
type = PackedColumn
block = 0
temperature = temperature
radius = 1.15
fluid_viscosity_file = ${viscosity_file}
fluid_density_file = ${density_file}
fluid_thermal_conductivity_file = ${thermal_conductivity_file}
fluid_specific_heat_file = ${specific_heat_file}
fluid_thermal_expansion_file = ${thermal_expansion_file}
[]
[column_bottom]
type = PackedColumn
block = 1
temperature = temperature
radius = 1
fluid_viscosity_file = ${viscosity_file}
fluid_density_file = ${density_file}
fluid_thermal_conductivity_file = ${thermal_conductivity_file}
fluid_specific_heat_file = ${specific_heat_file}
fluid_thermal_expansion_file = ${thermal_expansion_file}
[]
[elasticity_tensor]
type = ADComputeIsotropicElasticityTensor
youngs_modulus = 200e9 # (Pa) from wikipedia
poissons_ratio = .3 # from wikipedia
[]
[elastic_stress]
type = ADComputeFiniteStrainElasticStress
[]
[thermal_strain]
type = ADComputeThermalExpansionEigenstrain
stress_free_temperature = 300
eigenstrain_name = eigenstrain
temperature = temperature
thermal_expansion_coeff = 1e-5
[]
[]
[Postprocessors/average_temperature]
type = ElementAverageValue
variable = temperature
[]
[AuxVariables/velocity]
order = CONSTANT
family = MONOMIAL_VEC
[]
[AuxKernels/velocity]
type = DarcyVelocity
variable = velocity
execute_on = timestep_end
pressure = pressure
[]
[Problem]
type = FEProblem
[]
[Executioner]
type = Transient
end_time = 200
dt = 0.25
start_time = -1
solve_type = PJFNK
petsc_options_iname = '-pc_type'
petsc_options_value = 'lu'
line_search = none
automatic_scaling = true
compute_scaling_once = false
steady_state_tolerance = 1e-7
steady_state_detection = true
[TimeStepper]
type = FunctionDT
function = 'if(t<0,0.1,0.25)'
[]
[]
[Outputs/out]
type = Exodus
elemental_as_nodal = true
[]
(test/tests/materials/generic_materials/generic_constant_symmetric_rank_two_tensor.i)
[Mesh]
type = GeneratedMesh
dim = 1
[]
[Problem]
type = FEProblem
solve = false
[]
[Materials]
[tensor]
type = GenericConstantSymmetricRankTwoTensor
tensor_name = constant
tensor_values = '1 2 3 4 5 6' # Note mandel factor kicks in for the off-diagonal entries
outputs = all
[]
[]
[Executioner]
type = Transient
num_steps = 1
[]
[Postprocessors]
[0]
type = ElementAverageValue
variable = constant_0
[]
[1]
type = ElementAverageValue
variable = constant_1
[]
[2]
type = ElementAverageValue
variable = constant_2
[]
[3]
type = ElementAverageValue
variable = constant_3
[]
[4]
type = ElementAverageValue
variable = constant_4
[]
[5]
type = ElementAverageValue
variable = constant_5
[]
[]
[Outputs]
csv = true
[]
(tutorials/darcy_thermo_mech/step04_velocity_aux/tests/auxkernels/velocity_aux/velocity_aux.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 2
ny = 2
[]
coord_type = RZ
rz_coord_axis = X
[]
[Variables]
[pressure]
[]
[]
[AuxVariables]
[velocity]
order = CONSTANT
family = MONOMIAL_VEC
[]
[]
[AuxKernels]
[velocity]
type = DarcyVelocity
variable = velocity
execute_on = timestep_end
pressure = pressure
[]
[]
[Functions]
[pressure_ic_func]
type = ParsedFunction
expression = 2000*x*y*x*y
[]
[]
[ICs]
[pressure_ic]
type = FunctionIC
variable = pressure
function = pressure_ic_func
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Materials]
[pressure]
type = ADGenericConstantMaterial
prop_values = '0.8451e-9 7.98e-4'
prop_names = 'permeability viscosity'
[]
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(modules/phase_field/test/tests/reconstruction/1phase_reconstruction.i)
#
# In this test we set the initial condition of a set of order parameters
# by pulling out the grain data from given EBSD data file ignoring the phase completely.
#
[Problem]
type = FEProblem
solve = false
kernel_coverage_check = false
[]
# The following sections are extracted in the documentation in
# moose/docs/content/modules/phase_field/ICs/EBSD.md
[Mesh]
# Create a mesh representing the EBSD data
[ebsd_mesh]
type = EBSDMeshGenerator
filename = IN100_001_28x28_Marmot.txt
[]
[]
[GlobalParams]
# Define the number and names of the order parameters used to represent the grains
op_num = 4
var_name_base = gr
[]
[UserObjects]
[ebsd_reader]
# Read in the EBSD data. Uses the filename given in the mesh block.
type = EBSDReader
[]
[ebsd]
type = PolycrystalEBSD
coloring_algorithm = bt
ebsd_reader = ebsd_reader
output_adjacency_matrix = true
[]
[grain_tracker]
type = GrainTracker
# For displaying HALO fields
compute_halo_maps = true
# Link in the ebsd userobject here so that grain tracker can extract info from it
polycrystal_ic_uo = ebsd
[]
[]
[Variables]
[PolycrystalVariables]
# Create all the order parameters
order = FIRST
family = LAGRANGE
[]
[]
[ICs]
[PolycrystalICs]
[PolycrystalColoringIC]
# Uses the data from the user object 'ebsd' to initialize the variables for all the order parameters.
polycrystal_ic_uo = ebsd
[]
[]
[]
#ENDDOC - End of the file section that is included in the documentation. Do not change this line!
[GlobalParams]
execute_on = 'initial'
family = MONOMIAL
order = CONSTANT
[]
[AuxVariables]
[PHI1]
[]
[PHI]
[]
[PHI2]
[]
[GRAIN]
[]
[unique_grains]
[]
[var_indices]
[]
[halo0]
[]
[halo1]
[]
[halo2]
[]
[halo3]
[]
[]
[AuxKernels]
[phi1_aux]
type = EBSDReaderPointDataAux
variable = PHI1
ebsd_reader = ebsd_reader
data_name = 'phi1'
[]
[phi_aux]
type = EBSDReaderPointDataAux
variable = PHI
ebsd_reader = ebsd_reader
data_name = 'phi'
[]
[phi2_aux]
type = EBSDReaderPointDataAux
variable = PHI2
ebsd_reader = ebsd_reader
data_name = 'phi2'
[]
[grain_aux]
type = EBSDReaderPointDataAux
variable = GRAIN
ebsd_reader = ebsd_reader
data_name = 'feature_id'
[]
[unique_grains]
type = FeatureFloodCountAux
variable = unique_grains
flood_counter = grain_tracker
field_display = UNIQUE_REGION
[]
[var_indices]
type = FeatureFloodCountAux
variable = var_indices
flood_counter = grain_tracker
field_display = VARIABLE_COLORING
[]
[halo0]
type = FeatureFloodCountAux
variable = halo0
map_index = 0
field_display = HALOS
flood_counter = grain_tracker
[]
[halo1]
type = FeatureFloodCountAux
variable = halo1
map_index = 1
field_display = HALOS
flood_counter = grain_tracker
[]
[halo2]
type = FeatureFloodCountAux
variable = halo2
map_index = 2
field_display = HALOS
flood_counter = grain_tracker
[]
[halo3]
type = FeatureFloodCountAux
variable = halo3
map_index = 3
field_display = HALOS
flood_counter = grain_tracker
[]
[]
[Executioner]
type = Steady
[]
[Outputs]
exodus = true
[]
(modules/combined/test/tests/3d-mortar-projection-tolerancing/test.i)
stress_free_temperature = 300
thermal_expansion_coeff = 6.66e-6
[Problem]
type = FEProblem
[]
[GlobalParams]
displacements = 'disp_x disp_y disp_z'
temperature = T_K
[]
[Mesh]
patch_update_strategy = iteration
use_displaced_mesh = true
patch_size = 40
[ori]
type = FileMeshGenerator
file = 'test.msh'
[]
[]
[Variables]
[disp_x]
block = 'pellet_inner pellet_outer'
[]
[disp_y]
block = 'pellet_inner pellet_outer'
[]
[disp_z]
block = 'pellet_inner pellet_outer'
[]
[T_K]
[InitialCondition]
type = ConstantIC
value = 300.0
[]
[]
[lm_pellet]
block = 'pellet_secondary_subdomain'
[]
[]
[Kernels]
[solid_x]
type = ADStressDivergenceTensors
variable = disp_x
component = 0
block = 'pellet_inner pellet_outer'
use_displaced_mesh = false
[]
[solid_y]
type = ADStressDivergenceTensors
variable = disp_y
component = 1
block = 'pellet_inner pellet_outer'
use_displaced_mesh = false
[]
[solid_z]
type = ADStressDivergenceTensors
variable = disp_z
component = 2
block = 'pellet_inner pellet_outer'
use_displaced_mesh = false
[]
[timeder]
type = ADHeatConductionTimeDerivative
variable = 'T_K'
density_name = density
specific_heat = specific_heat
block = 'pellet_inner pellet_outer'
use_displaced_mesh = true
[]
[diff]
type = ADHeatConduction
variable = 'T_K'
thermal_conductivity = thermal_conductivity
block = 'pellet_inner pellet_outer'
use_displaced_mesh = true
[]
[heatsource]
type = ADMatHeatSource
variable = 'T_K'
material_property = radial_source
block = 'pellet_inner pellet_outer'
use_displaced_mesh = true
[]
[]
[Debug]
show_var_residual_norms = TRUE
[]
[BCs]
[mirror_z]
type = ADDirichletBC
variable = disp_z
boundary = 'mirror_innerp mirror_outerp'
value = 0
[]
[mirror_x]
type = ADDirichletBC
variable = disp_x
boundary = 'mirror_innerp mirror_outerp'
value = 0
[]
[mirror_y]
type = ADDirichletBC
variable = disp_y
boundary = 'mirror_innerp mirror_outerp'
value = 0
[]
[]
[Materials]
[pellet_properties]
type = ADGenericConstantMaterial
prop_names = 'density thermal_conductivity specific_heat'
prop_values = '3.3112e3 34 1.2217e3'
block = 'pellet_inner pellet_outer'
[]
[pulse_shape_linear]
type = ADGenericFunctionMaterial
prop_values = '5e10*max(11455*(t)/7,1e-9)'
prop_names = 'radial_source'
block = 'pellet_inner pellet_outer'
use_displaced_mesh = false
[]
[strain]
type = ADComputeSmallStrain
displacements = 'disp_x disp_y disp_z'
eigenstrain_names = eigenstrain #nameS!
block = 'pellet_inner pellet_outer'
[]
[thermal_strain]
type = ADComputeThermalExpansionEigenstrain
stress_free_temperature = ${stress_free_temperature}
thermal_expansion_coeff = ${thermal_expansion_coeff}
eigenstrain_name = eigenstrain
block = 'pellet_inner pellet_outer'
[]
[elasticity]
type = ADComputeIsotropicElasticityTensor
youngs_modulus = 3.306e11
poissons_ratio = 0.329
[]
[stress]
type = ADComputeLinearElasticStress
block = 'pellet_inner pellet_outer'
[]
[]
[Contact]
[pellet]
primary = void_pellet_0
secondary = void_pellet_1
model = frictionless
formulation = mortar
c_normal = 1e6
correct_edge_dropping = true
[]
[]
[UserObjects]
[conduction]
type = GapFluxModelConduction
temperature = T_K
boundary = 'void_pellet_0 void_pellet_1'
gap_conductivity = 0.4
use_displaced_mesh = true
[]
[rad_pellet]
type = GapFluxModelRadiation
temperature = T_K
boundary = void_pellet_0
primary_emissivity = 0.37
secondary_emissivity = 0.37
use_displaced_mesh = true
[]
[]
[Constraints]
[gap_pellet]
type = ModularGapConductanceConstraint
variable = lm_pellet
secondary_variable = T_K
primary_boundary = 'void_pellet_0'
primary_subdomain = pellet_primary_subdomain
secondary_boundary = 'void_pellet_1'
secondary_subdomain = pellet_secondary_subdomain
gap_flux_models = 'conduction rad_pellet' #closed_pellet
gap_geometry_type = 'CYLINDER'
cylinder_axis_point_1 = '0 0 0'
cylinder_axis_point_2 = '0 0 1'
use_displaced_mesh = true
quadrature = SECOND
[]
[]
[Executioner]
type = Transient
solve_type = NEWTON
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package -pc_factor_shift_type'
petsc_options_value = 'lu superlu_dist NONZERO'
automatic_scaling = true
line_search = none
ignore_variables_for_autoscaling = 'pellet_normal_lm'
compute_scaling_once = true
scaling_group_variables = 'disp_x disp_y disp_z; T_K'
nl_rel_tol = 1e-50
nl_abs_tol = 1e-8
nl_max_its = 20
dtmin = 1e-3
dt = 1e-3
start_time = 0e-3
end_time = 1
[]
[Outputs]
[exodus]
type = Exodus
file_base = constMat
[]
print_linear_residuals = false
[]
(test/tests/functions/image_function/component.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 20
ny = 20
[]
[Variables]
[u]
[]
[]
[Functions]
[image_func]
type = ImageFunction
file_base = stack/test
file_suffix = png
file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
component = 0
[]
[]
[ICs]
[u_ic]
type = FunctionIC
function = image_func
variable = u
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 1
dt = 0.1
[]
[Outputs]
exodus = true
[]
(modules/contact/test/tests/verification/patch_tests/ring_1/ring1_mu_0_2_pen.i)
[GlobalParams]
volumetric_locking_correction = true
displacements = 'disp_x disp_y'
[]
[Mesh]
file = ring1_mesh.e
coord_type = RZ
[]
[Problem]
type = FEProblem
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[]
[AuxVariables]
[./stress_xx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zz]
order = CONSTANT
family = MONOMIAL
[../]
[./penetration]
[../]
[./saved_x]
[../]
[./saved_y]
[../]
[./diag_saved_x]
[../]
[./diag_saved_y]
[../]
[./inc_slip_x]
[../]
[./inc_slip_y]
[../]
[./accum_slip_x]
[../]
[./accum_slip_y]
[../]
[./tang_force_x]
[../]
[./tang_force_y]
[../]
[]
[Kernels]
[./TensorMechanics]
use_displaced_mesh = true
save_in = 'saved_x saved_y'
[../]
[]
[AuxKernels]
[./stress_xx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xx
index_i = 0
index_j = 0
execute_on = timestep_end
[../]
[./stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
execute_on = timestep_end
[../]
[./stress_xy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xy
index_i = 0
index_j = 1
execute_on = timestep_end
[../]
[./stress_zz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zz
index_i = 2
index_j = 2
execute_on = timestep_end
[../]
[./inc_slip_x]
type = PenetrationAux
variable = inc_slip_x
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./inc_slip_y]
type = PenetrationAux
variable = inc_slip_y
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./accum_slip_x]
type = PenetrationAux
variable = accum_slip_x
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./accum_slip_y]
type = PenetrationAux
variable = accum_slip_y
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./penetration]
type = PenetrationAux
variable = penetration
boundary = 3
paired_boundary = 4
[../]
[./tang_force_x]
type = PenetrationAux
variable = tang_force_x
quantity = tangential_force_x
boundary = 3
paired_boundary = 4
[../]
[./tang_force_y]
type = PenetrationAux
variable = tang_force_y
quantity = tangential_force_y
boundary = 3
paired_boundary = 4
[../]
[] # AuxKernels
[Postprocessors]
[./bot_react_x]
type = NodalSum
variable = saved_x
boundary = 1
[../]
[./bot_react_y]
type = NodalSum
variable = saved_y
boundary = 1
[../]
[./top_react_x]
type = NodalSum
variable = saved_x
boundary = 5
[../]
[./top_react_y]
type = NodalSum
variable = saved_y
boundary = 5
[../]
[./ref_resid_x]
type = NodalL2Norm
execute_on = timestep_end
variable = saved_x
[../]
[./ref_resid_y]
type = NodalL2Norm
execute_on = timestep_end
variable = saved_y
[../]
[./sigma_yy]
type = ElementAverageValue
variable = stress_yy
[../]
[./sigma_zz]
type = ElementAverageValue
variable = stress_zz
[../]
[./disp_x2]
type = NodalVariableValue
nodeid = 1
variable = disp_x
[../]
[./disp_x7]
type = NodalVariableValue
nodeid = 6
variable = disp_x
[../]
[./disp_y2]
type = NodalVariableValue
nodeid = 1
variable = disp_y
[../]
[./disp_y7]
type = NodalVariableValue
nodeid = 6
variable = disp_y
[../]
[./_dt]
type = TimestepSize
[../]
[./num_lin_it]
type = NumLinearIterations
[../]
[./num_nonlin_it]
type = NumNonlinearIterations
[../]
[]
[BCs]
[./bot_y]
type = DirichletBC
variable = disp_y
boundary = 1
value = 0.0
[../]
[./top_press]
type = Pressure
variable = disp_y
boundary = 5
factor = 109.89
[../]
[]
[Materials]
[./bot_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '1'
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./bot_strain]
type = ComputeAxisymmetricRZIncrementalStrain
block = '1'
[../]
[./bot_stress]
type = ComputeFiniteStrainElasticStress
block = '1'
[../]
[./top_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '2'
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./top_strain]
type = ComputeAxisymmetricRZIncrementalStrain
block = '2'
[../]
[./top_stress]
type = ComputeFiniteStrainElasticStress
block = '2'
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_factor_mat_solver_type'
petsc_options_value = 'lu superlu_dist'
line_search = 'none'
nl_abs_tol = 1e-10
nl_rel_tol = 1e-9
l_max_its = 50
nl_max_its = 100
dt = 1.0
end_time = 1.0
num_steps = 10
dtmin = 1.0
l_tol = 1e-5
[]
[VectorPostprocessors]
[./x_disp]
type = NodalValueSampler
variable = disp_x
boundary = '1 3 4 5'
sort_by = x
[../]
[./cont_press]
type = NodalValueSampler
variable = contact_pressure
boundary = '3'
sort_by = x
[../]
[]
[Outputs]
file_base = ring1_mu_0_2_pen_out
print_linear_residuals = true
perf_graph = true
[./exodus]
type = Exodus
elemental_as_nodal = true
[../]
[./console]
type = Console
max_rows = 5
[../]
[./chkfile]
type = CSV
file_base = ring1_mu_0_2_pen_check
show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x7 disp_y7 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
execute_vector_postprocessors_on = timestep_end
[../]
[./outfile]
type = CSV
delimiter = ' '
execute_vector_postprocessors_on = none
[../]
[]
[Contact]
[./leftright]
secondary = 3
primary = 4
model = coulomb
formulation = penalty
normalize_penalty = true
tangential_tolerance = 1e-3
friction_coefficient = 0.2
penalty = 1e+9
[../]
[]
(test/tests/transfers/multiapp_copy_transfer/second_lagrange_from_sub/parent.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
elem_type = QUAD8
[]
[Variables]
[./u]
family = LAGRANGE
order = SECOND
[../]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 1
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[MultiApps]
[./sub]
type = FullSolveMultiApp
input_files = sub.i
execute_on = initial
[../]
[]
[Transfers]
[./from_sub]
type = MultiAppCopyTransfer
source_variable = u
variable = u
from_multi_app = sub
[../]
[]
[Outputs]
exodus = true
[]
(test/tests/problems/verbose_setup/sample.i)
[Mesh]
type = GeneratedMesh
dim = 2
[]
[Variables]
[u]
initial_condition = 3
[]
[]
[Kernels]
[diff]
type = Diffusion
variable = u
[]
[]
[AuxVariables]
[c]
[]
[]
[AuxKernels]
[copy]
type = ProjectionAux
v = u
variable = c
[]
[]
[Materials]
[unused]
type = GenericConstantMaterial
prop_names = 'f1'
prop_values = '2'
[]
[]
[Functions]
[f]
type = ConstantFunction
value = 1
[]
[]
[Problem]
type = FEProblem
solve = false
verbose_setup = true
[]
[Executioner]
type = Steady
[]
(modules/stochastic_tools/test/tests/surrogates/pod_rb/errors/sub.i)
[Problem]
type = FEProblem
extra_tag_vectors = 'diff react bodyf'
[]
[Mesh]
type = GeneratedMesh
dim = 1
nx = 15
xmax = 10
[]
[Variables]
[u]
[]
[]
[Kernels]
[diffusion]
type = MatDiffusion
variable = u
diffusivity = k
extra_vector_tags = 'diff'
[]
[reaction]
type = MaterialReaction
variable = u
coefficient = alpha
extra_vector_tags = 'react'
[]
[source]
type = BodyForce
variable = u
value = 1.0
extra_vector_tags = 'bodyf'
[]
[]
[Materials]
[k]
type = GenericConstantMaterial
prop_names = k
prop_values = 1.0
[]
[alpha]
type = GenericConstantMaterial
prop_names = alpha
prop_values = 1.0
[]
[]
[BCs]
[left]
type = DirichletBC
variable = u
boundary = left
value = 0
[]
[right]
type = DirichletBC
variable = u
boundary = right
value = 0
[]
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Controls]
[stochastic]
type = SamplerReceiver
[]
[]
(test/tests/auxkernels/pp_depend/pp_depend_indirect_correct.i)
[Mesh]
type = GeneratedMesh
dim = 1
[]
[Variables]
[u]
[]
[]
[Functions]
[t_func]
type = ParsedFunction
expression = ptime
symbol_names = ptime
symbol_values = ptime_pp
[]
[]
[Kernels]
[diff]
type = Diffusion
variable = u
[]
[]
[Postprocessors]
[t_pp1]
type = FunctionValuePostprocessor
function = t_func
indirect_dependencies = ptime_pp
[]
[ptime_pp]
type = TimePostprocessor
[]
[t_pp2]
type = FunctionValuePostprocessor
function = t_func
indirect_dependencies = ptime_pp
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
dt = 1
num_steps = 5
[]
[Outputs]
csv = true
[]
(test/tests/restart/pointer_restart_errors/pointer_store_error.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = left
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = right
value = 1
[../]
[]
[UserObjects]
[./restartable_types]
type = PointerStoreError
[../]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
[./checkpoint]
type = Checkpoint
num_files = 1
[../]
[]
(tutorials/darcy_thermo_mech/step07_adaptivity/problems/step7c_adapt.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 30
ny = 3
xmax = 0.304 # Length of test chamber
ymax = 0.0257 # Test chamber radius
[]
coord_type = RZ
rz_coord_axis = X
uniform_refine = 3
[]
[Variables]
[pressure]
[]
[temperature]
initial_condition = 300 # Start at room temperature
[]
[]
[Kernels]
[darcy_pressure]
type = DarcyPressure
variable = pressure
[]
[heat_conduction]
type = ADHeatConduction
variable = temperature
[]
[heat_conduction_time_derivative]
type = ADHeatConductionTimeDerivative
variable = temperature
[]
[heat_convection]
type = DarcyAdvection
variable = temperature
pressure = pressure
[]
[]
[BCs]
[inlet_temperature]
type = FunctionDirichletBC
variable = temperature
boundary = left
function = 'if(t<0,350+50*t,350)'
[]
[outlet_temperature]
type = HeatConductionOutflow
variable = temperature
boundary = right
[]
[inlet]
type = DirichletBC
variable = pressure
boundary = left
value = 4000 # (Pa) From Figure 2 from paper. First data point for 1mm spheres.
[]
[outlet]
type = DirichletBC
variable = pressure
boundary = right
value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
[]
[]
[Materials/column]
type = PackedColumn
temperature = temperature
radius = 1
[]
[AuxVariables/velocity]
order = CONSTANT
family = MONOMIAL_VEC
[]
[AuxKernels/velocity]
type = DarcyVelocity
variable = velocity
execute_on = timestep_end
pressure = pressure
[]
[Problem]
type = FEProblem
[]
[Executioner]
type = Transient
end_time = 100
dt = 0.25
start_time = -1
solve_type = NEWTON
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
automatic_scaling = true
steady_state_tolerance = 1e-5
steady_state_detection = true
[TimeStepper]
type = FunctionDT
function = 'if(t<0,0.1,0.25)'
[]
[]
[Outputs]
exodus = true
[]
[Adaptivity]
marker = error_frac
max_h_level = 3
[Indicators/temperature_jump]
type = GradientJumpIndicator
variable = temperature
scale_by_flux_faces = true
[]
[Markers/error_frac]
type = ErrorFractionMarker
coarsen = 0.15
indicator = temperature_jump
refine = 0.7
[]
[]
(test/tests/userobjects/shape_element_user_object/shape_side_uo_physics_test.i)
u_left = 0.5
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
parallel_type = replicated
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
[../]
[./pot]
[../]
[]
[Kernels]
[./diff_u]
type = Diffusion
variable = u
[../]
[./adv_u]
type = PotentialAdvection
variable = u
potential = pot
[../]
[./diff_pot]
type = Diffusion
variable = pot
[../]
[]
[BCs]
[./left]
boundary = left
type = DirichletBC
value = ${u_left}
variable = u
[../]
[./right]
boundary = right
type = DirichletBC
variable = u
value = 0
[../]
[./left_pot]
boundary = left
type = ExampleShapeSideIntegratedBC
variable = pot
num_user_object = num_user_object
denom_user_object = denom_user_object
v = u
Vb = 1
[../]
[./right_pot]
boundary = right
type = DirichletBC
variable = pot
value = 0
[../]
[]
[UserObjects]
[./num_user_object]
type = NumShapeSideUserObject
u = u
boundary = left
execute_on = 'linear nonlinear'
[../]
[./denom_user_object]
type = DenomShapeSideUserObject
u = u
boundary = left
execute_on = 'linear nonlinear'
[../]
[]
[AuxVariables]
[./u_flux]
family = MONOMIAL
order = CONSTANT
[../]
[]
[AuxKernels]
[./u_flux]
type = DriftDiffusionFluxAux
variable = u_flux
u = u
potential = pot
component = 0
[../]
[]
[Problem]
type = FEProblem
use_hash_table_matrix_assembly = true
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Executioner]
type = Steady
solve_type = NEWTON
petsc_options = '-snes_converged_reason -ksp_converged_reason -snes_linesearch_monitor'
petsc_options_iname = '-pc_type -sub_pc_type -sub_ksp_type'
petsc_options_value = 'asm lu preonly'
[]
[Outputs]
exodus = true
perf_graph = true
[]
[ICs]
[./u]
type = FunctionIC
variable = u
function = ic_u
[../]
[./pot]
type = FunctionIC
variable = pot
function = ic_pot
[../]
[]
[Functions]
[./ic_u]
type = ParsedFunction
expression = '${u_left} * (1 - x)'
[../]
[./ic_pot]
type = ParsedFunction
expression = '1 - x'
[../]
[]
(test/tests/transfers/multiapp_copy_transfer/third_monomial_from_sub/parent.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
[]
[Variables]
[./u]
family = MONOMIAL
order = THIRD
[../]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 1
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[MultiApps]
[./sub]
type = FullSolveMultiApp
input_files = sub.i
execute_on = initial
[../]
[]
[Transfers]
[./from_sub]
type = MultiAppCopyTransfer
source_variable = aux
variable = u
from_multi_app = sub
[../]
[]
[Outputs]
exodus = true
[]
(test/tests/transfers/multiapp_copy_transfer/aux_to_aux/sub.i)
[Problem]
type = FEProblem
solve = false
[]
[Mesh]
type = GeneratedMesh
dim = 2
[]
[AuxVariables/aux]
initial_condition = 1980
[]
[Executioner]
type = Transient
[]
[Outputs]
execute_on = 'FINAL'
exodus = true
[]
(test/tests/markers/oriented_box_marker/obm.i)
# checks that OrientedBoxMarker behaves as desired
[Mesh]
type = GeneratedMesh
dim = 3
xmin = -6
xmax = 4
nx = 10
ymin = -2
ymax = 10
ny = 12
zmin = -5
zmax = 7
nz = 12
[]
[Variables]
[./u]
[../]
[]
[Problem]
type = FEProblem
solve = false
kernel_coverage_check = false
[]
[Executioner]
type = Transient
solve_type = PJFNK
end_time = 1
[]
[Adaptivity]
marker = obm
[./Markers]
[./obm]
type = OrientedBoxMarker
center = '-1 4 1'
width = 5
length = 10
height = 4
width_direction = '2 1 0'
length_direction = '-1 2 2'
inside = refine
outside = do_nothing
[../]
[../]
[]
[Outputs]
exodus = true
[]
(test/tests/restart/pointer_restart_errors/pointer_load_error2.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = left
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = right
value = 1
[../]
[]
[UserObjects]
[./restartable_types]
type = PointerLoadError
[../]
[]
[Problem]
type = FEProblem
solve = false
restart_file_base = pointer_load_error_out_cp/0001
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
[./out]
type = Checkpoint
num_files = 1
[../]
[]
(modules/solid_mechanics/test/tests/interaction_integral_benchmark/input.i)
# Uses InteractionIntegralBenchmarkBC to test the mixed-mode stress intensity
# factor capability. InteractionIntegralBenchmarkBC applies a displacement
# field for which KI = KII = KIII = 1.0. Using the option 2d = true gives a
# q field that is constant along the tangent and returns Ki = 1.0 for all i.
# To get the correct value for all nodes with 2d = false, the mesh around the
# crack tip must be refined and the q-function radii must be reduced by at
# least two orders of magnitude.
[GlobalParams]
order = FIRST
family = LAGRANGE
displacements = 'disp_x disp_y disp_z'
volumetric_locking_correction = true
[]
[Mesh]
file = 360degree_model.e
displacements = 'disp_x disp_y disp_z'
[]
[Problem]
type = FEProblem
[]
[Functions]
[./kifunc]
type = PiecewiseLinear
x = '0.0 1.0 2.0'
y = '0.0 1.0 2.0'
[../]
[]
[DomainIntegral]
integrals = 'JIntegral InteractionIntegralKI InteractionIntegralKII InteractionIntegralKIII'
boundary = 1001
crack_direction_method = CrackDirectionVector
crack_direction_vector = '1 0 0'
radius_inner = '0.5 1.0 1.5 2.0'
radius_outer = '1.0 1.5 2.0 2.5'
youngs_modulus = 30000
poissons_ratio = 0.3
block = 1
2d = true
axis_2d = 2
equivalent_k = True
incremental = true
[]
[AuxVariables]
[./dq_x]
order = CONSTANT
family = MONOMIAL
[../]
[./dq_y]
order = CONSTANT
family = MONOMIAL
[../]
[./dq_z]
order = CONSTANT
family = MONOMIAL
[../]
[]
[Physics/SolidMechanics/QuasiStatic]
[./master]
strain = FINITE
add_variables = true
incremental = true
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
[../]
[]
[BCs]
[./all_x]
type = InteractionIntegralBenchmarkBC
variable = disp_x
component = x
boundary = 1
KI_function = kifunc
KII_function = 1.0
KIII_function = 1.0
youngs_modulus = 30000
poissons_ratio = 0.3
crack_front_definition = crackFrontDefinition
crack_front_point_index = 0
[../]
[./all_y]
type = InteractionIntegralBenchmarkBC
variable = disp_y
component = y
boundary = 1
KI_function = kifunc
KII_function = 1.0
KIII_function = 1.0
youngs_modulus = 30000
poissons_ratio = 0.3
crack_front_definition = crackFrontDefinition
crack_front_point_index = 0
[../]
[./all_z]
type = InteractionIntegralBenchmarkBC
variable = disp_z
component = z
boundary = 1
KI_function = kifunc
KII_function = 1.0
KIII_function = 1.0
youngs_modulus = 30000
poissons_ratio = 0.3
crack_front_definition = crackFrontDefinition
crack_front_point_index = 0
[../]
[]
[Materials]
[./elasticity_tensor]
type = ComputeIsotropicElasticityTensor
youngs_modulus = 30000
poissons_ratio = 0.3
[../]
[./elastic_stress]
type = ComputeFiniteStrainElasticStress
[../]
[]
[Executioner]
type = Transient
petsc_options = '-snes_ksp_ew'
petsc_options_iname = '-ksp_gmres_restart'
petsc_options_value = '101'
line_search = 'none'
l_max_its = 50
nl_max_its = 20
nl_abs_tol = 1e-3
l_tol = 1e-2
start_time = 0.0
dt = 1
end_time = 2
num_steps = 2
[]
[Postprocessors]
[./_dt]
type = TimestepSize
[../]
[./nl_its]
type = NumNonlinearIterations
[../]
[./lin_its]
type = NumLinearIterations
[../]
[]
[Outputs]
execute_on = 'timestep_end'
file_base = 360degree_model_out
csv = true
[]
(modules/phase_field/test/tests/phase_field_crystal/PFC_IC/PFC_IC_BCC_test.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 100
ny = 100
xmax = 15
ymax = 15
[]
[Variables]
[./rho]
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = rho
[../]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 0
[]
[Outputs]
exodus = true
[]
[ICs]
[./rho_IC]
y2 = 12.5
lc = 5
y1 = 2.5
x2 = 12.5
crystal_structure = BCC
variable = rho
x1 = 2.5
type = PFCFreezingIC
min = .3
max = .7
[../]
[]
(test/tests/transfers/multiapp_copy_transfer/third_monomial_to_sub/sub.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
[]
[Variables]
[./u]
family = MONOMIAL
order = THIRD
[../]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
[]
[Outputs]
exodus = true
[]
(tutorials/darcy_thermo_mech/step03_darcy_material/tests/materials/packed_column/packed_column.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 100
ny = 10
xmax = 0.304 # Length of test chamber
ymax = 0.0257 # Test chamber radius
[]
coord_type = RZ
rz_coord_axis = X
[]
[Variables]
[pressure]
[]
[]
[Kernels]
[darcy_pressure]
type = DarcyPressure
variable = pressure
# No parameters necessary because the values will come from the material system
[]
[]
[BCs]
[inlet]
type = DirichletBC
variable = pressure
boundary = left
value = 4000 # (Pa) From Figure 2 from paper. First dot for 1mm spheres.
[]
[outlet]
type = DirichletBC
variable = pressure
boundary = right
value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
[]
[]
[Materials]
[column]
type = PackedColumn
[]
[]
[Problem]
type = FEProblem
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(test/tests/functions/image_function/shift_and_scale.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 20
ny = 20
[]
[Variables]
[u]
[]
[]
[Functions]
[image_func]
type = ImageFunction
file_base = stack/test
file_suffix = png
file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
shift = -62735.0
scale = 0.0001
[]
[]
[ICs]
[u_ic]
type = FunctionIC
function = image_func
variable = u
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 1
dt = 0.1
[]
[Outputs]
exodus = true
[]
(modules/phase_field/test/tests/initial_conditions/PolycrystalVoronoiVoidIC_moregrains.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 40
ny = 40
nz = 0
xmax = 250
ymax = 250
zmax = 0
elem_type = QUAD4
[]
[GlobalParams]
op_num = 12
grain_num = 25
var_name_base = gr
numbub = 15
bubspac = 22
radius = 8
int_width = 10
invalue = 1
outvalue = 0.1
[]
[Variables]
[c]
[]
[PolycrystalVariables]
[]
[]
[ICs]
[PolycrystalICs]
[PolycrystalVoronoiVoidIC]
polycrystal_ic_uo = voronoi
[]
[]
[c_IC]
variable = c
type = PolycrystalVoronoiVoidIC
structure_type = voids
polycrystal_ic_uo = voronoi
[]
[]
[UserObjects]
[voronoi]
type = PolycrystalVoronoi
int_width = 0
[]
[]
[BCs]
[Periodic]
[all]
auto_direction = 'x y'
[]
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 0
[]
[Outputs]
exodus = true
[]
(test/tests/controls/restrict_exec_flag/sub.i)
[Mesh]
type = GeneratedMesh
dim = 1
[]
[Variables]
[u]
initial_condition = 1980
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
[]
(tutorials/darcy_thermo_mech/step06_coupled_darcy_heat_conduction/problems/step6b_transient_inflow.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 200
ny = 10
xmax = 0.304 # Length of test chamber
ymax = 0.0257 # Test chamber radius
[]
coord_type = RZ
rz_coord_axis = X
[]
[Variables]
[pressure]
[]
[temperature]
initial_condition = 300 # Start at room temperature
[]
[]
[Kernels]
[darcy_pressure]
type = DarcyPressure
variable = pressure
[]
[heat_conduction]
type = ADHeatConduction
variable = temperature
[]
[heat_conduction_time_derivative]
type = ADHeatConductionTimeDerivative
variable = temperature
[]
[heat_convection]
type = DarcyAdvection
variable = temperature
pressure = pressure
[]
[]
[BCs]
[inlet_temperature]
type = FunctionDirichletBC
variable = temperature
boundary = left
function = 'if(t<0,350+50*t,350)'
[]
[outlet_temperature]
type = HeatConductionOutflow
variable = temperature
boundary = right
[]
[inlet]
type = FunctionDirichletBC
variable = pressure
boundary = left
function = 2000*sin(0.466*pi*t) # Inlet signal from Fig. 3
[]
[outlet]
type = FunctionDirichletBC
variable = pressure
boundary = right
function = 2000*cos(0.466*pi*t) # Outlet signal from Fig. 3
[]
[]
[Materials/column]
type = PackedColumn
radius = 1
temperature = temperature
fluid_viscosity_file = data/water_viscosity.csv
fluid_density_file = data/water_density.csv
fluid_thermal_conductivity_file = data/water_thermal_conductivity.csv
fluid_specific_heat_file = data/water_specific_heat.csv
outputs = exodus
[]
[AuxVariables/velocity]
order = CONSTANT
family = MONOMIAL_VEC
[]
[AuxKernels/velocity]
type = DarcyVelocity
variable = velocity
execute_on = timestep_end
pressure = pressure
[]
[Problem]
type = FEProblem
[]
[Executioner]
type = Transient
end_time = 100
dt = 0.25
start_time = -1
solve_type = NEWTON
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
automatic_scaling = true
steady_state_tolerance = 1e-5
steady_state_detection = true
[TimeStepper]
type = FunctionDT
function = 'if(t<0,0.1,(2*pi/(0.466*pi))/16)' # dt to always hit the peaks of sine/cosine BC
[]
[]
[Outputs]
exodus = true
[]
(test/tests/functions/image_function/image_mesh_3d.i)
[Mesh]
type = ImageMesh
dim = 3
file_base = stack/test
file_suffix = png
[]
[Variables]
[u]
[]
[]
[Functions]
[image_func]
# ImageFunction gets its file range parameters from ImageMesh,
# when it is present. This prevents duplicating information in
# input files.
type = ImageFunction
[]
[]
[ICs]
[u_ic]
type = FunctionIC
function = image_func
variable = u
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 1
dt = 0.1
[]
[Outputs]
exodus = true
[]
(modules/phase_field/test/tests/reconstruction/2phase_reconstruction.i)
#
# In this test we set the initial condition of two variables
# based on solely the phase information in a given EBSD data file,
# ignoring the feature IDs entirely
#
[Problem]
type = FEProblem
solve = false
kernel_coverage_check = false
[]
# The following sections are extracted in the documentation in
# moose/docs/content/modules/phase_field/ICs/EBSD.md
[Mesh]
# Create a mesh representing the EBSD data
[ebsd_mesh]
type = EBSDMeshGenerator
filename = 'Ti_2Phase_28x28_ebsd.txt'
[]
[]
[UserObjects]
[ebsd]
# Read in the EBSD data. Uses the filename given in the mesh block.
type = EBSDReader
[]
[]
[Variables]
# Creates the two variables being initialized
[c1]
[]
[c2]
[]
[]
[ICs]
[phase1_recon]
# Initializes the variable info from the ebsd data
type = ReconPhaseVarIC
ebsd_reader = ebsd
phase = 1
variable = c1
[]
[phase2_recon]
type = ReconPhaseVarIC
ebsd_reader = ebsd
phase = 2
variable = c2
[]
[]
#ENDDOC - End of the file section that is included in the documentation. Do not change this line!
[AuxVariables]
[PHI1]
family = MONOMIAL
order = CONSTANT
[]
[PHI]
family = MONOMIAL
order = CONSTANT
[]
[APHI2]
family = MONOMIAL
order = CONSTANT
[]
[PHI2]
family = MONOMIAL
order = CONSTANT
[]
[PHASE]
family = MONOMIAL
order = CONSTANT
[]
[]
[AuxKernels]
[phi1_aux]
type = EBSDReaderPointDataAux
variable = PHI1
ebsd_reader = ebsd
data_name = 'phi1'
execute_on = 'initial'
[]
[phi_aux]
type = EBSDReaderPointDataAux
variable = PHI
ebsd_reader = ebsd
data_name = 'phi'
execute_on = 'initial'
[]
[phi2_aux]
type = EBSDReaderPointDataAux
variable = PHI2
ebsd_reader = ebsd
data_name = 'phi2'
execute_on = 'initial'
[]
[phase_aux]
type = EBSDReaderPointDataAux
variable = PHASE
ebsd_reader = ebsd
data_name = 'phase'
execute_on = 'initial'
[]
[]
[Executioner]
type = Transient
num_steps = 0
[]
[Outputs]
exodus = true
[]
(test/tests/controls/restrict_exec_flag/exec_flag_error.i)
[Mesh]
type = GeneratedMesh
dim = 1
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
[]
[MultiApps]
[sub]
type = FullSolveMultiApp
positions = '0 0 0'
input_files = sub.i
[]
[]
[Controls]
[test]
type = TestControl
test_type = 'execflag_error'
[]
[]
(tutorials/tutorial01_app_development/step05_kernel_object/problems/pressure_diffusion.i)
[Mesh]
type = GeneratedMesh # Can generate simple lines, rectangles and rectangular prisms
dim = 2 # Dimension of the mesh
nx = 100 # Number of elements in the x direction
ny = 10 # Number of elements in the y direction
xmax = 0.304 # Length of test chamber
ymax = 0.0257 # Test chamber radius
rz_coord_axis = X # Which axis the symmetry is around
coord_type = RZ # Axisymmetric RZ
[]
[Problem]
type = FEProblem # This is the "normal" type of Finite Element Problem in MOOSE
[]
[Variables]
[pressure]
# Adds a Linear Lagrange variable by default
[]
[]
[Kernels]
[diffusion]
type = DarcyPressure # Zero-gravity, divergence-free form of Darcy's law
variable = pressure # Operate on the "pressure" variable from above
[]
[]
[BCs]
[inlet]
type = ADDirichletBC # Simple u=value BC
variable = pressure # Variable to be set
boundary = left # Name of a sideset in the mesh
value = 4000 # (Pa) From Figure 2 from paper. First data point for 1mm spheres.
[]
[outlet]
type = ADDirichletBC
variable = pressure
boundary = right
value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
[]
[]
[Executioner]
type = Steady # Steady state problem
solve_type = NEWTON # Perform a Newton solve
# Set PETSc parameters to optimize solver efficiency
petsc_options_iname = '-pc_type -pc_hypre_type' # PETSc option pairs with values below
petsc_options_value = ' hypre boomeramg'
[]
[Outputs]
exodus = true # Output Exodus format
[]
(modules/stochastic_tools/examples/surrogates/pod_rb/2d_multireg/sub.i)
halfa = 10
fulla = 20
[Problem]
type = FEProblem
extra_tag_vectors = 'diff0 diff1 diff2 diff3 abs0 abs1 abs2 abs3 src0 src1 src2'
[]
[Mesh]
[msh]
type = CartesianMeshGenerator
dim = 2
dx = '10 20 20 20 20 20 20 20 20'
dy = '10 20 20 20 20 20 20 20 20'
ix = '${halfa} ${fulla} ${fulla} ${fulla} ${fulla} ${fulla} ${fulla} ${fulla} ${fulla}'
iy = '${halfa} ${fulla} ${fulla} ${fulla} ${fulla} ${fulla} ${fulla} ${fulla} ${fulla}'
subdomain_id = '1 0 0 0 1 0 0 2 3
0 0 0 0 0 0 0 2 3
0 0 1 0 0 0 2 2 3
0 0 0 0 0 0 2 3 3
1 0 0 0 1 2 2 3 3
0 0 0 0 2 2 3 3 3
0 0 2 2 2 3 3 3 3
2 2 2 3 3 3 3 3 3
3 3 3 3 3 3 3 3 3'
[]
[]
[Variables]
[psi]
[]
[]
[Kernels]
[diff0]
type = MatDiffusion
variable = psi
diffusivity = D0
extra_vector_tags = 'diff0'
block = 0
[]
[diff1]
type = MatDiffusion
variable = psi
diffusivity = D1
extra_vector_tags = 'diff1'
block = 1
[]
[diff2]
type = MatDiffusion
variable = psi
diffusivity = D2
extra_vector_tags = 'diff2'
block = 2
[]
[diff3]
type = MatDiffusion
variable = psi
diffusivity = D3
extra_vector_tags = 'diff3'
block = 3
[]
[abs0]
type = MaterialReaction
variable = psi
coefficient = absxs0
extra_vector_tags = 'abs0'
block = 0
[]
[abs1]
type = MaterialReaction
variable = psi
coefficient = absxs1
extra_vector_tags = 'abs1'
block = 1
[]
[abs2]
type = MaterialReaction
variable = psi
coefficient = absxs2
extra_vector_tags = 'abs2'
block = 2
[]
[abs3]
type = MaterialReaction
variable = psi
coefficient = absxs3
extra_vector_tags = 'abs3'
block = 3
[]
[src0]
type = BodyForce
variable = psi
value = 1
extra_vector_tags = 'src0'
block = 0
[]
[src1]
type = BodyForce
variable = psi
value = 1
extra_vector_tags = 'src1'
block = 1
[]
[src2]
type = BodyForce
variable = psi
value = 1
extra_vector_tags = 'src2'
block = 2
[]
[]
[Materials]
[D0]
type = GenericConstantMaterial
prop_names = D0
prop_values = 1
block = 0
[]
[D1]
type = GenericConstantMaterial
prop_names = D1
prop_values = 1
block = 1
[]
[D2]
type = GenericConstantMaterial
prop_names = D2
prop_values = 1
block = 2
[]
[D3]
type = GenericConstantMaterial
prop_names = D3
prop_values = 1
block = 3
[]
[absxs0]
type = GenericConstantMaterial
prop_names = absxs0
prop_values = 1
block = 0
[]
[absxs1]
type = GenericConstantMaterial
prop_names = absxs1
prop_values = 1
block = 1
[]
[absxs2]
type = GenericConstantMaterial
prop_names = absxs2
prop_values = 1
block = 2
[]
[absxs3]
type = GenericConstantMaterial
prop_names = absxs3
prop_values = 1
block = 3
[]
[]
[BCs]
[left]
type = NeumannBC
variable = psi
boundary = left
value = 0
[]
[bottom]
type = NeumannBC
variable = psi
boundary = bottom
value = 0
[]
[top]
type = DirichletBC
variable = psi
boundary = top
value = 0
[]
[right]
type = DirichletBC
variable = psi
boundary = right
value = 0
[]
[]
[Executioner]
type = Steady
solve_type = linear
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Controls]
[stochastic]
type = SamplerReceiver
[]
[]
[Postprocessors]
[nodal_l2]
type = NodalL2Norm
variable = psi
[]
[]
[Outputs]
[]
(tutorials/darcy_thermo_mech/step06_coupled_darcy_heat_conduction/problems/step6c_decoupled.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 200
ny = 10
xmax = 0.304 # Length of test chamber
ymax = 0.0257 # Test chamber radius
[]
coord_type = RZ
rz_coord_axis = X
[]
[Variables]
[temperature]
initial_condition = 300 # Start at room temperature
[]
[]
[AuxVariables/pressure]
[]
[AuxKernels/pressure]
type = FunctionAux
variable = pressure
function = '4000 - 3000 * x - 3000 * t*x*x*y'
execute_on = timestep_end
[]
[Kernels]
[heat_conduction]
type = ADHeatConduction
variable = temperature
[]
[heat_conduction_time_derivative]
type = ADHeatConductionTimeDerivative
variable = temperature
[]
[heat_convection]
type = DarcyAdvection
variable = temperature
pressure = pressure
[]
[]
[BCs]
[inlet_temperature]
type = DirichletBC
variable = temperature
boundary = left
value = 350
[]
[outlet_temperature]
type = HeatConductionOutflow
variable = temperature
boundary = right
[]
[]
[Materials/column]
type = PackedColumn
temperature = 293.15 # 20C
radius = 1
[]
[Problem]
type = FEProblem
[]
[Executioner]
type = Transient
num_steps = 300
dt = 0.1
solve_type = NEWTON
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(modules/contact/test/tests/verification/patch_tests/ring_2/ring2_template1.i)
[GlobalParams]
volumetric_locking_correction = true
displacements = 'disp_x disp_y'
[]
[Mesh]
file = ring2_mesh.e
coord_type = RZ
[]
[Problem]
type = FEProblem
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[]
[AuxVariables]
[./stress_xx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zz]
order = CONSTANT
family = MONOMIAL
[../]
[./penetration]
[../]
[./saved_x]
[../]
[./saved_y]
[../]
[./diag_saved_x]
[../]
[./diag_saved_y]
[../]
[./inc_slip_x]
[../]
[./inc_slip_y]
[../]
[./accum_slip_x]
[../]
[./accum_slip_y]
[../]
[./tang_force_x]
[../]
[./tang_force_y]
[../]
[]
[Kernels]
[./TensorMechanics]
use_displaced_mesh = true
save_in = 'saved_x saved_y'
[../]
[]
[AuxKernels]
[./stress_xx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xx
index_i = 0
index_j = 0
execute_on = timestep_end
[../]
[./stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
execute_on = timestep_end
[../]
[./stress_xy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xy
index_i = 0
index_j = 1
execute_on = timestep_end
[../]
[./stress_zz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zz
index_i = 2
index_j = 2
execute_on = timestep_end
[../]
[./inc_slip_x]
type = PenetrationAux
variable = inc_slip_x
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./inc_slip_y]
type = PenetrationAux
variable = inc_slip_y
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./accum_slip_x]
type = PenetrationAux
variable = accum_slip_x
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./accum_slip_y]
type = PenetrationAux
variable = accum_slip_y
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./penetration]
type = PenetrationAux
variable = penetration
boundary = 3
paired_boundary = 4
[../]
[./tang_force_x]
type = PenetrationAux
variable = tang_force_x
quantity = tangential_force_x
boundary = 3
paired_boundary = 4
[../]
[./tang_force_y]
type = PenetrationAux
variable = tang_force_y
quantity = tangential_force_y
boundary = 3
paired_boundary = 4
[../]
[] # AuxKernels
[Postprocessors]
[./bot_react_x]
type = NodalSum
variable = saved_x
boundary = 1
[../]
[./bot_react_y]
type = NodalSum
variable = saved_y
boundary = 1
[../]
[./top_react_x]
type = NodalSum
variable = saved_x
boundary = 5
[../]
[./top_react_y]
type = NodalSum
variable = saved_y
boundary = 5
[../]
[./ref_resid_x]
type = NodalL2Norm
execute_on = timestep_end
variable = saved_x
[../]
[./ref_resid_y]
type = NodalL2Norm
execute_on = timestep_end
variable = saved_y
[../]
[./sigma_yy]
type = ElementAverageValue
variable = stress_yy
[../]
[./sigma_zz]
type = ElementAverageValue
variable = stress_zz
[../]
[./disp_x5]
type = NodalVariableValue
nodeid = 4
variable = disp_x
[../]
[./disp_x9]
type = NodalVariableValue
nodeid = 8
variable = disp_x
[../]
[./disp_y5]
type = NodalVariableValue
nodeid = 4
variable = disp_y
[../]
[./disp_y9]
type = NodalVariableValue
nodeid = 8
variable = disp_y
[../]
[./_dt]
type = TimestepSize
[../]
[./num_lin_it]
type = NumLinearIterations
[../]
[./num_nonlin_it]
type = NumNonlinearIterations
[../]
[]
[BCs]
[./bot_y]
type = DirichletBC
variable = disp_y
boundary = 1
value = 0.0
[../]
[./top_press]
type = Pressure
variable = disp_y
boundary = 5
factor = 109.89
[../]
[]
[Materials]
[./bot_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '1'
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./bot_strain]
type = ComputeAxisymmetricRZIncrementalStrain
block = '1'
[../]
[./bot_stress]
type = ComputeFiniteStrainElasticStress
block = '1'
[../]
[./top_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '2'
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./top_strain]
type = ComputeAxisymmetricRZIncrementalStrain
block = '2'
[../]
[./top_stress]
type = ComputeFiniteStrainElasticStress
block = '2'
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_factor_mat_solver_type'
petsc_options_value = 'lu superlu_dist'
line_search = 'none'
nl_abs_tol = 1e-9
nl_rel_tol = 1e-8
l_max_its = 100
nl_max_its = 200
dt = 1.0
end_time = 1.0
num_steps = 10
dtmin = 1.0
l_tol = 1e-5
[]
[VectorPostprocessors]
[./x_disp]
type = NodalValueSampler
variable = disp_x
boundary = '1 3 4 5'
sort_by = x
[../]
[./cont_press]
type = NodalValueSampler
variable = contact_pressure
boundary = '3'
sort_by = x
[../]
[]
[Outputs]
print_linear_residuals = true
perf_graph = true
[./exodus]
type = Exodus
elemental_as_nodal = true
[../]
[./console]
type = Console
max_rows = 5
[../]
[./chkfile]
type = CSV
show = 'bot_react_x bot_react_y disp_x5 disp_y5 disp_x9 disp_y9 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
execute_vector_postprocessors_on = timestep_end
[../]
[./outfile]
type = CSV
delimiter = ' '
execute_vector_postprocessors_on = none
[../]
[]
[Contact]
[./leftright]
secondary = 3
primary = 4
normalize_penalty = true
tangential_tolerance = 1e-3
penalty = 1e+9
[../]
[]
(test/tests/preconditioners/pbp/pbp_dg_test.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 20
ny = 20
xmin = 0
xmax = 1
ymin = 0
ymax = 1
elem_type = QUAD4
[]
[Variables]
[./u]
order = FIRST
family = MONOMIAL
[../]
[./v]
order = FIRST
family = MONOMIAL
[../]
[]
[Preconditioning]
[./PBP]
type = PBP
solve_order = 'u v'
preconditioner = 'AMG AMG'
[../]
[]
[Kernels]
[./diff_u]
type = Diffusion
variable = u
[../]
[./abs_u]
type = Reaction
variable = u
[../]
[./forcing_u]
type = BodyForce
variable = u
function = forcing_fn
[../]
[./diff_v]
type = Diffusion
variable = v
[../]
[./abs_v]
type = Reaction
variable = v
[../]
[./forcing_v]
type = BodyForce
variable = v
function = forcing_fn
[../]
[./conv_v]
type = CoupledForce
variable = v
v = u
[../]
[]
[DGKernels]
[./dg_diff]
type = DGDiffusion
variable = u
epsilon = -1
sigma = 6
[../]
[./dg_diff_2]
type = DGDiffusion
variable = v
epsilon = -1
sigma = 6
[../]
[]
[Functions]
[./forcing_fn]
type = ParsedFunction
expression = 2*pow(e,-x-(y*y))*(1-2*y*y)
[../]
[./exact_fn]
type = ParsedGradFunction
value = pow(e,-x-(y*y))
grad_x = -pow(e,-x-(y*y))
grad_y = -2*y*pow(e,-x-(y*y))
[../]
[]
[BCs]
[./all_u]
type = DGFunctionDiffusionDirichletBC
variable = u
boundary = '0 1 2 3'
function = exact_fn
epsilon = -1
sigma = 6
[../]
[./all_v]
type = DGFunctionDiffusionDirichletBC
variable = v
boundary = '0 1 2 3'
function = exact_fn
epsilon = -1
sigma = 6
[../]
[]
[Problem]
type = FEProblem
error_on_jacobian_nonzero_reallocation = true
[]
[Executioner]
type = Steady
l_max_its = 10
nl_max_its = 10
solve_type = JFNK
[]
[Outputs]
exodus = true
[]
(test/tests/auxkernels/grad_component/grad_component_monomial.i)
[Mesh]
type = GeneratedMesh
dim = 2
xmax = 2
nx = 20
ny = 10
[]
[Variables]
[./not_u]
[../]
[]
[AuxVariables]
[./u]
family = MONOMIAL
order = FIRST
[../]
[./grad_u_x]
order = CONSTANT
family = MONOMIAL
[../]
[]
[ICs]
[./u]
type = FunctionIC
variable = u
function = 'if(x>0.5,if(x<1.5,2*x,3),0)'
[../]
[]
[AuxKernels]
[./grad_u_x_aux]
type = VariableGradientComponent
variable = grad_u_x
component = x
gradient_variable = u
execute_on = initial
[../]
[]
[Problem]
type = FEProblem
solve = false
kernel_coverage_check = false
[]
[Executioner]
type = Steady
[]
[Outputs]
exodus = true
[]
(test/tests/functions/image_function/threshold.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 20
ny = 20
[]
[Variables]
[u]
[]
[]
[Functions]
[image_func]
type = ImageFunction
file_base = stack/test
file_suffix = png
file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
threshold = 6e4
upper_value = 1
lower_value = -1
[]
[]
[ICs]
[u_ic]
type = FunctionIC
function = image_func
variable = u
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 1
dt = 0.1
[]
[Outputs]
exodus = true
[]
(test/tests/transfers/transfer_once_per_fixed_point/parent.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
[]
[Problem]
type = FEProblem
solve = false
verbose_multiapps = true
[]
[Executioner]
type = Transient
num_steps = 4
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
fixed_point_min_its = 4
fixed_point_max_its = 20
verbose = true
[]
[MultiApps]
# This app is used to trigger fixed point iteration when sub is executed on MULTIAPP_FIXED_POINT_BEGIN/END
[side_app]
type = TransientMultiApp
input_files = sub.i
cli_args = "MultiApps/active='';Outputs/active=''"
execute_on = 'INITIAL TIMESTEP_END'
# The input was originally created with effectively no restore
# see the changes made for #5554 then reverted in #28115
no_restore = true
[]
# This app is used to test the fixed point begin/end execute_on for transfers and multiapps
[sub]
type = TransientMultiApp
input_files = sub.i
execute_on = 'INITIAL TIMESTEP_END'
# The input was originally created with effectively no restore
# see the changes made for #5554 then reverted in #28115
no_restore = true
[]
[]
[Transfers]
[to_sub]
type = MultiAppPostprocessorTransfer
from_postprocessor = num_fixed_point_total
to_postprocessor = parent_fp_its
to_multi_app = sub
check_multiapp_execute_on = false
execute_on = 'MULTIAPP_FIXED_POINT_BEGIN'
[]
[from_sub]
type = MultiAppPostprocessorTransfer
from_postprocessor = num_fixed_point_its
to_postprocessor = subapp_fp_its
from_multi_app = sub
check_multiapp_execute_on = false
execute_on = 'MULTIAPP_FIXED_POINT_BEGIN'
reduction_type = 'sum'
[]
[]
[Postprocessors]
[num_fixed_point_total]
type = TestPostprocessor
test_type = 'grow'
execute_on = 'INITIAL TIMESTEP_END'
[]
[num_fixed_point_begin]
type = TestPostprocessor
test_type = 'grow'
execute_on = 'MULTIAPP_FIXED_POINT_BEGIN'
[]
[num_fixed_point_end]
type = TestPostprocessor
test_type = 'grow'
execute_on = 'MULTIAPP_FIXED_POINT_END'
[]
[subapp_fp_its]
type = Receiver
[]
[]
[Outputs]
[fp_begin]
type = CSV
execute_on = 'MULTIAPP_FIXED_POINT_BEGIN'
[]
[fp_end]
type = CSV
file_base = 'fp_end'
execute_on = 'MULTIAPP_FIXED_POINT_END'
[]
[]
(test/tests/tag/2d_diffusion_tag_matrix.i)
[Mesh]
[square]
type = GeneratedMeshGenerator
nx = 2
ny = 2
dim = 2
[]
[]
[Variables]
[u]
order = FIRST
family = LAGRANGE
[]
[]
[AuxVariables]
[tag_variable1]
order = FIRST
family = LAGRANGE
[]
[tag_variable2]
order = FIRST
family = LAGRANGE
[]
[]
[Kernels]
[diff]
type = Diffusion
variable = u
extra_matrix_tags = 'mat_tag1 mat_tag2'
[]
[]
[AuxKernels]
[TagMatrixAux1]
type = TagMatrixAux
variable = tag_variable1
v = u
matrix_tag = mat_tag1
[]
[TagMatrixAux2]
type = TagMatrixAux
variable = tag_variable2
v = u
matrix_tag = mat_tag2
[]
[]
[BCs]
[left]
type = DirichletBC
variable = u
boundary = 3
value = 0
extra_matrix_tags = mat_tag1
[]
[right]
type = DirichletBC
variable = u
boundary = 1
value = 1
extra_matrix_tags = mat_tag2
[]
[]
[Problem]
type = FEProblem
extra_tag_matrices = 'mat_tag1 mat_tag2'
[]
[Executioner]
type = Steady
solve_type = 'NEWTON'
[]
[Outputs]
file_base = tag_matrix_out
exodus = true
[]
(tutorials/darcy_thermo_mech/step04_velocity_aux/problems/step4.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator # Can generate simple lines, rectangles and rectangular prisms
dim = 2 # Dimension of the mesh
nx = 100 # Number of elements in the x direction
ny = 10 # Number of elements in the y direction
xmax = 0.304 # Length of test chamber
ymax = 0.0257 # Test chamber radius
[]
coord_type = RZ # Axisymmetric RZ
rz_coord_axis = X # Which axis the symmetry is around
[]
[Variables/pressure]
# Adds a Linear Lagrange variable by default
[]
[AuxVariables/velocity]
order = CONSTANT
family = MONOMIAL_VEC
[]
[Kernels/darcy_pressure]
type = DarcyPressure
variable = pressure
[]
[AuxKernels]
[velocity]
type = DarcyVelocity
variable = velocity
execute_on = timestep_end
pressure = pressure
[]
[]
[BCs]
[inlet]
type = DirichletBC # Simple u=value BC
variable = pressure # Variable to be set
boundary = left # Name of a sideset in the mesh
value = 4000 # (Pa) From Figure 2 from paper. First data point for 1mm spheres.
[]
[outlet]
type = DirichletBC
variable = pressure
boundary = right
value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
[]
[]
[Materials/column]
type = PackedColumn
radius = 1
[]
[Problem]
type = FEProblem # This is the "normal" type of Finite Element Problem in MOOSE
[]
[Executioner]
type = Steady # Steady state problem
solve_type = NEWTON # Perform a Newton solve, uses AD to compute Jacobian terms
petsc_options_iname = '-pc_type -pc_hypre_type' # PETSc option pairs with values below
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true # Output Exodus format
[]
(test/tests/restart/pointer_restart_errors/pointer_load_error.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = left
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = right
value = 1
[../]
[]
[UserObjects]
[./restartable_types]
type = PointerLoadError
[../]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
checkpoint = true
[]
(test/tests/materials/generic_materials/generic_constant_rank_two_tensor.i)
[Mesh]
type = GeneratedMesh
dim = 1
[]
[Problem]
type = FEProblem
solve = false
[]
[Materials]
[./tensor]
type = GenericConstantRankTwoTensor
tensor_name = constant
# tensor values are column major-ordered
tensor_values = '1 4 7 2 5 8 3 6 9'
outputs = all
[../]
[]
[Executioner]
type = Transient
num_steps = 1
[]
[Postprocessors]
[00]
type = ElementAverageValue
variable = constant_00
[]
[01]
type = ElementAverageValue
variable = constant_01
[]
[02]
type = ElementAverageValue
variable = constant_02
[]
[10]
type = ElementAverageValue
variable = constant_10
[]
[11]
type = ElementAverageValue
variable = constant_11
[]
[12]
type = ElementAverageValue
variable = constant_12
[]
[20]
type = ElementAverageValue
variable = constant_20
[]
[21]
type = ElementAverageValue
variable = constant_21
[]
[22]
type = ElementAverageValue
variable = constant_22
[]
[]
[Outputs]
csv = true
[]
(test/tests/meshgenerators/image_mesh_generator/image_2d.i)
[Mesh]
[gen]
type = GeneratedMeshGenerator
dim = 2
nx = 176
ny = 287
[]
[image]
type = ImageSubdomainGenerator
input = gen
file = kitten.png #../../functions/image_function/stack/test
threshold = 100
[]
[]
[Variables]
[u]
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
[]
[Outputs]
execute_on = 'timestep_end'
exodus = true
[]
(test/tests/materials/generic_materials/generic_constant_real_vector_value.i)
[Mesh]
type = GeneratedMesh
dim = 1
[]
[Problem]
type = FEProblem
solve = false
[]
[Materials]
[vector]
type = GenericConstantRealVectorValue
vector_name = constant
vector_values = '1 2 3'
outputs = all
[]
[]
[Executioner]
type = Transient
num_steps = 1
[]
[Outputs]
exodus = true
[]
(test/tests/misc/solution_invalid/solution_invalid_recover.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 2
ny = 2
xmax = 1
ymax = 1
[]
[Variables]
[u]
[]
[]
# Sets solution invalid using the SolutionInvalidInterface, as diffusivity exceeds the set threshold.
[Materials]
[filter]
type = NonsafeMaterial
diffusivity = 0.5
threshold = 0.3
invalid_after_time = 1
[]
[]
[Kernels]
[du_dt]
type = TimeDerivative
variable = u
[]
[diffusion]
type = MatDiffusion
variable = u
diffusivity = diffusivity
[]
[]
[BCs]
[left]
type = DirichletBC
variable = u
boundary = left
value = 1
[]
[right]
type = DirichletBC
variable = u
boundary = right
value = 0
[]
[]
[Problem]
type = FEProblem
allow_invalid_solution = true
immediately_print_invalid_solution = false
[]
[Executioner]
type = Transient
num_steps = 3
error_on_dtmin = false
solve_type = 'NEWTON'
petsc_options_iname = '-pc_type -pc_factor_mat_solver_type'
petsc_options_value = 'lu superlu_dist'
[]
[Reporters]
[solution_invalidity]
type = SolutionInvalidityReporter
[]
[]
[Outputs]
file_base = 'solution_invalid_recover'
json = true
[]
(tutorials/darcy_thermo_mech/step08_postprocessors/problems/step8.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 30
ny = 3
xmax = 0.304 # Length of test chamber
ymax = 0.0257 # Test chamber radius
[]
coord_type = RZ
rz_coord_axis = X
uniform_refine = 2
[]
[Variables]
[pressure]
[]
[temperature]
initial_condition = 300 # Start at room temperature
[]
[]
[Kernels]
[darcy_pressure]
type = DarcyPressure
variable = pressure
[]
[heat_conduction]
type = ADHeatConduction
variable = temperature
[]
[heat_conduction_time_derivative]
type = ADHeatConductionTimeDerivative
variable = temperature
[]
[heat_convection]
type = DarcyAdvection
variable = temperature
pressure = pressure
[]
[]
[BCs]
[inlet_temperature]
type = FunctionDirichletBC
variable = temperature
boundary = left
function = 'if(t<0,350+50*t,350)'
[]
[outlet_temperature]
type = HeatConductionOutflow
variable = temperature
boundary = right
[]
[inlet]
type = DirichletBC
variable = pressure
boundary = left
value = 4000 # (Pa) From Figure 2 from paper. First data point for 1mm spheres.
[]
[outlet]
type = DirichletBC
variable = pressure
boundary = right
value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
[]
[]
[Materials/column]
type = PackedColumn
temperature = temperature
radius = 1
porosity = '0.25952 + 0.7*y/0.0257'
[]
[Postprocessors]
[average_temperature]
type = ElementAverageValue
variable = temperature
[]
[outlet_heat_flux]
type = ADSideDiffusiveFluxIntegral
variable = temperature
boundary = right
diffusivity = thermal_conductivity
[]
[]
[VectorPostprocessors/temperature_sample]
type = LineValueSampler
num_points = 500
start_point = '0.1 0 0'
end_point = '0.1 0.0257 0'
variable = temperature
sort_by = y
[]
[AuxVariables/velocity]
order = CONSTANT
family = MONOMIAL_VEC
[]
[AuxKernels/velocity]
type = DarcyVelocity
variable = velocity
execute_on = timestep_end
pressure = pressure
[]
[Problem]
type = FEProblem
[]
[Executioner]
type = Transient
end_time = 100
dt = 0.25
start_time = -1
solve_type = NEWTON
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
automatic_scaling = true
steady_state_tolerance = 1e-5
steady_state_detection = true
[TimeStepper]
type = FunctionDT
function = 'if(t<0,0.1,0.25)'
[]
[]
[Outputs]
exodus = true
csv = true
[]
(test/tests/multiapps/command_line/sub.i)
[Variables]
[u]
initial_condition = 1980
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
[]
[Outputs]
exodus = true
[]
(test/tests/misc/block_boundary_material_check/side_uo_check.i)
[Mesh]
type = GeneratedMesh
dim = 1
[]
[Variables]
[./u]
[../]
[]
[UserObjects]
[./side_uo]
type = MatSideUserObject
mat_prop = 'foo'
boundary = 1
[../]
[]
[Problem]
type = FEProblem
solve = false
kernel_coverage_check = false
[]
[Executioner]
type = Steady
[]
(modules/phase_field/test/tests/initial_conditions/ClosePackIC.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 5
ymax = .5
uniform_refine = 5
[]
[Variables]
[./u]
[../]
[]
[AuxVariables]
[./phi]
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = left
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = right
value = 1
[../]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
execute_on = 'timestep_end'
exodus = true
[]
[ICs]
[./close_pack]
radius = 0.07
outvalue = 0
variable = phi
invalue = 1
type = ClosePackIC
[../]
[]
(test/tests/userobjects/message_from_input/message_from_input.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 2
ny = 2
xmax = 1
ymax = 1
[]
[Variables]
[u]
[]
[]
[BCs]
[left]
type = DirichletBC
variable = u
boundary = left
value = 1
[]
[right]
type = DirichletBC
variable = u
boundary = right
value = 0
[]
[]
[Kernels]
[diff]
type = Diffusion
variable = u
[]
[]
[Problem]
type = FEProblem
[]
[UserObjects]
[message_out]
type = MessageFromInput
execute_on = timestep_end
[]
[]
[Executioner]
type = Steady
solve_type = 'NEWTON'
petsc_options_iname = '-pc_type -pc_factor_mat_solver_type'
petsc_options_value = 'lu superlu_dist'
[]
[Outputs]
exodus = true
[]
(test/tests/functions/image_function/threshold_adapt.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 2
ny = 2
[]
[Variables]
[u]
[]
[]
[Functions]
[image_func]
type = ImageFunction
file_base = stack/test
file_suffix = png
file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
threshold = 6e4
upper_value = 1
lower_value = -1
[]
[]
[ICs]
[u_ic]
type = FunctionIC
function = image_func
variable = u
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 1
dt = 0.1
[]
[Adaptivity]
max_h_level = 5
initial_steps = 5
initial_marker = marker
[Indicators]
[indicator]
type = GradientJumpIndicator
variable = u
[]
[]
[Markers]
[marker]
type = ErrorFractionMarker
indicator = indicator
refine = 0.9
[]
[]
[]
[Outputs]
exodus = true
[]
(modules/contact/test/tests/verification/patch_tests/ring_4/ring4_template1.i)
[GlobalParams]
order = SECOND
displacements = 'disp_x disp_y'
[]
[Mesh]
file = ring4_mesh.e
coord_type = RZ
[]
[Problem]
type = FEProblem
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[]
[AuxVariables]
[./stress_xx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zz]
order = CONSTANT
family = MONOMIAL
[../]
[./penetration]
[../]
[./saved_x]
[../]
[./saved_y]
[../]
[./diag_saved_x]
[../]
[./diag_saved_y]
[../]
[./inc_slip_x]
[../]
[./inc_slip_y]
[../]
[./accum_slip_x]
[../]
[./accum_slip_y]
[../]
[./tang_force_x]
[../]
[./tang_force_y]
[../]
[]
[Kernels]
[./TensorMechanics]
use_displaced_mesh = true
save_in = 'saved_x saved_y'
[../]
[]
[AuxKernels]
[./stress_xx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xx
index_i = 0
index_j = 0
execute_on = timestep_end
[../]
[./stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
execute_on = timestep_end
[../]
[./stress_xy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xy
index_i = 0
index_j = 1
execute_on = timestep_end
[../]
[./stress_zz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zz
index_i = 2
index_j = 2
execute_on = timestep_end
[../]
[./inc_slip_x]
type = PenetrationAux
variable = inc_slip_x
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./inc_slip_y]
type = PenetrationAux
variable = inc_slip_y
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./accum_slip_x]
type = PenetrationAux
variable = accum_slip_x
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./accum_slip_y]
type = PenetrationAux
variable = accum_slip_y
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./penetration]
type = PenetrationAux
variable = penetration
boundary = 3
paired_boundary = 4
[../]
[./tang_force_x]
type = PenetrationAux
variable = tang_force_x
quantity = tangential_force_x
boundary = 3
paired_boundary = 4
[../]
[./tang_force_y]
type = PenetrationAux
variable = tang_force_y
quantity = tangential_force_y
boundary = 3
paired_boundary = 4
[../]
[] # AuxKernels
[Postprocessors]
[./bot_react_x]
type = NodalSum
variable = saved_x
boundary = 1
[../]
[./bot_react_y]
type = NodalSum
variable = saved_y
boundary = 1
[../]
[./top_react_x]
type = NodalSum
variable = saved_x
boundary = 5
[../]
[./top_react_y]
type = NodalSum
variable = saved_y
boundary = 5
[../]
[./ref_resid_x]
type = NodalL2Norm
execute_on = timestep_end
variable = saved_x
[../]
[./ref_resid_y]
type = NodalL2Norm
execute_on = timestep_end
variable = saved_y
[../]
[./sigma_yy]
type = ElementAverageValue
variable = stress_yy
[../]
[./sigma_zz]
type = ElementAverageValue
variable = stress_zz
[../]
[./disp_x16]
type = NodalVariableValue
nodeid = 15
variable = disp_x
[../]
[./disp_x9]
type = NodalVariableValue
nodeid = 8
variable = disp_x
[../]
[./disp_y16]
type = NodalVariableValue
nodeid = 15
variable = disp_y
[../]
[./disp_y9]
type = NodalVariableValue
nodeid = 8
variable = disp_y
[../]
[./_dt]
type = TimestepSize
[../]
[./num_lin_it]
type = NumLinearIterations
[../]
[./num_nonlin_it]
type = NumNonlinearIterations
[../]
[]
[BCs]
[./bot_y]
type = DirichletBC
variable = disp_y
boundary = 1
value = 0.0
[../]
[./top_press]
type = Pressure
variable = disp_y
boundary = 5
factor = 109.89
[../]
[]
[Materials]
[./bot_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '1'
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./bot_strain]
type = ComputeAxisymmetricRZIncrementalStrain
block = '1'
[../]
[./bot_stress]
type = ComputeFiniteStrainElasticStress
block = '1'
[../]
[./top_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '2'
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./top_strain]
type = ComputeAxisymmetricRZIncrementalStrain
block = '2'
[../]
[./top_stress]
type = ComputeFiniteStrainElasticStress
block = '2'
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_factor_mat_solver_type'
petsc_options_value = 'lu superlu_dist'
line_search = 'none'
nl_abs_tol = 1e-10
nl_rel_tol = 1e-9
l_max_its = 50
nl_max_its = 100
dt = 1.0
end_time = 1.0
num_steps = 10
dtmin = 1.0
l_tol = 1e-5
[]
[VectorPostprocessors]
[./x_disp]
type = NodalValueSampler
variable = disp_x
boundary = '1 3 4 5'
sort_by = x
[../]
[./cont_press]
type = NodalValueSampler
variable = contact_pressure
boundary = '3'
sort_by = x
[../]
[]
[Outputs]
print_linear_residuals = true
perf_graph = true
[./exodus]
type = Exodus
elemental_as_nodal = true
[../]
[./console]
type = Console
max_rows = 5
[../]
[./chkfile]
type = CSV
show = 'bot_react_x bot_react_y disp_x9 disp_y9 disp_x16 disp_y16 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
execute_vector_postprocessors_on = timestep_end
[../]
[./outfile]
type = CSV
delimiter = ' '
execute_vector_postprocessors_on = none
[../]
[]
[Contact]
[./leftright]
secondary = 3
primary = 4
normalize_penalty = true
tangential_tolerance = 1e-3
penalty = 1e+9
[../]
[]
(test/tests/functions/image_function/threshold_adapt_parallel.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 2
ny = 2
parallel_type = distributed
[]
[Variables]
[u]
[]
[]
[Functions]
[image_func]
type = ImageFunction
file_base = stack/test
file_suffix = png
file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
threshold = 6e4
upper_value = 1
lower_value = -1
[]
[]
[ICs]
[u_ic]
type = FunctionIC
function = image_func
variable = u
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 1
dt = 0.1
[]
[Adaptivity]
max_h_level = 5
initial_steps = 5
initial_marker = marker
[Indicators]
[indicator]
type = GradientJumpIndicator
variable = u
[]
[]
[Markers]
[marker]
type = ErrorFractionMarker
indicator = indicator
refine = 0.9
[]
[]
[]
(test/tests/transfers/multiapp_copy_transfer/errors/sub.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
[]
[Variables]
[./u]
[../]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
[]
(test/tests/transfers/multiapp_conservative_transfer/sub_conservative_transfer.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 20
ny = 20
xmin = 0.05
xmax = 1.2
ymin = 0.05
ymax = 1.1
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[./coupledforce]
type = CoupledForce
variable = u
v = aux_u
[../]
[]
[AuxVariables]
[./aux_u]
family = LAGRANGE
order = FIRST
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = left
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = right
value = 1
[../]
[]
[Postprocessors]
[./to_postprocessor]
type = ElementIntegralVariablePostprocessor
variable = aux_u
execute_on = 'transfer'
[../]
[]
[Problem]
type = FEProblem
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
nl_abs_tol = 1e-12
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(test/tests/transfers/multiapp_conservative_transfer/secondary_negative_adjuster.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 20
ny = 20
[]
[Variables]
[u]
[]
[]
[Kernels]
[diff]
type = Diffusion
variable = u
[]
[]
[AuxVariables]
[var]
family = MONOMIAL
order = CONSTANT
[]
[]
[BCs]
[left]
type = DirichletBC
variable = u
boundary = left
value = 0
[]
[right]
type = DirichletBC
variable = u
boundary = right
value = 1
[]
[]
[Postprocessors]
[to_postprocessor]
type = ElementIntegralVariablePostprocessor
variable = var
execute_on = 'transfer'
[]
[]
[Problem]
type = FEProblem
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
nl_abs_tol = 1e-12
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(test/tests/transfers/multiapp_copy_transfer/between_multiapps/sub2.i)
[Problem]
type = FEProblem
solve = false
[]
[Mesh]
type = GeneratedMesh
dim = 2
[]
[AuxVariables/x2]
initial_condition = 1980
[]
[Executioner]
type = Transient
[]
[Outputs]
execute_on = 'FINAL'
exodus = true
[]
(modules/phase_field/test/tests/MultiSmoothCircleIC/test_problem.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 20
ny = 20
xmin = 0
xmax = 50
ymin = 0
ymax = 50
elem_type = QUAD4
[]
[Variables]
[./c]
order = FIRST
family = LAGRANGE
[../]
[]
[AuxVariables]
[./features]
order = CONSTANT
family = MONOMIAL
[../]
[./ghosts]
order = CONSTANT
family = MONOMIAL
[../]
[./halos]
order = CONSTANT
family = MONOMIAL
[../]
[./proc_id]
order = CONSTANT
family = MONOMIAL
[../]
[]
[ICs]
[./c]
type = LatticeSmoothCircleIC
variable = c
invalue = 1.0
outvalue = 0.0001
circles_per_side = '2 2'
pos_variation = 10.0
radius = 8.0
int_width = 5.0
radius_variation_type = uniform
avoid_bounds = false
[../]
[]
[BCs]
[./Periodic]
[./c]
variable = c
auto_direction = 'x y'
[../]
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = c
[../]
[]
[AuxKernels]
[./features]
type = FeatureFloodCountAux
variable = features
execute_on = 'initial timestep_end'
flood_counter = features
[../]
[./ghosts]
type = FeatureFloodCountAux
variable = ghosts
field_display = GHOSTED_ENTITIES
execute_on = 'initial timestep_end'
flood_counter = features
[../]
[./halos]
type = FeatureFloodCountAux
variable = halos
field_display = HALOS
execute_on = 'initial timestep_end'
flood_counter = features
[../]
[./proc_id]
type = ProcessorIDAux
variable = proc_id
execute_on = 'initial timestep_end'
[../]
[]
[Postprocessors]
[./features]
type = FeatureFloodCount
variable = c
flood_entity_type = ELEMENTAL
execute_on = 'initial timestep_end'
[../]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
[]
[Outputs]
exodus = true
[]
(tutorials/tutorial01_app_development/step02_input_file/problems/pressure_diffusion.i)
[Mesh]
type = GeneratedMesh # Can generate simple lines, rectangles and rectangular prisms
dim = 2 # Dimension of the mesh
nx = 100 # Number of elements in the x direction
ny = 10 # Number of elements in the y direction
xmax = 0.304 # Length of test chamber
ymax = 0.0257 # Test chamber radius
rz_coord_axis = X # Which axis the symmetry is around
coord_type = RZ # Axisymmetric RZ
[]
[Problem]
type = FEProblem # This is the "normal" type of Finite Element Problem in MOOSE
[]
[Variables]
[pressure]
# Adds a Linear Lagrange variable by default
[]
[]
[Kernels]
[diffusion]
type = ADDiffusion # Laplacian operator
variable = pressure # Operate on the "pressure" variable from above
[]
[]
[BCs]
[inlet]
type = ADDirichletBC # Simple u=value BC
variable = pressure # Variable to be set
boundary = left # Name of a sideset in the mesh
value = 4000 # (Pa) From Figure 2 from paper. First data point for 1mm spheres.
[]
[outlet]
type = ADDirichletBC
variable = pressure
boundary = right
value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
[]
[]
[Executioner]
type = Steady # Steady state problem
solve_type = NEWTON # Perform a Newton solve
# Set PETSc parameters to optimize solver efficiency
petsc_options_iname = '-pc_type -pc_hypre_type' # PETSc option pairs with values below
petsc_options_value = ' hypre boomeramg'
[]
[Outputs]
exodus = true # Output Exodus format
[]
(test/tests/misc/block_boundary_material_check/dgkernel_check_boundary.i)
[Mesh]
type = GeneratedMesh
dim = 1
[]
[Variables]
[./u]
[../]
[]
[DGKernels]
[./dg]
type = MatDGKernel
mat_prop = 'foo'
variable = u
boundary = 1
[../]
[]
[Problem]
type = FEProblem
solve = false
kernel_coverage_check = false
[]
[Executioner]
type = Steady
[]
(modules/phase_field/test/tests/phase_field_crystal/PFC_IC/PFC_IC_FCC_test.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 100
ny = 100
xmax = 10
ymax = 10
[]
[Variables]
[rho]
[]
[]
[Kernels]
[diff]
type = Diffusion
variable = rho
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 0
[]
[Outputs]
exodus = true
[]
[ICs]
[rho_IC]
y2 = 8.75
lc = 5
y1 = 1.25
x2 = 8.75
crystal_structure = FCC
variable = rho
x1 = 1.25
type = PFCFreezingIC
min = .3
max = .7
[]
[]
(test/tests/transfers/multiapp_copy_transfer/third_monomial_from_sub/sub.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
[]
[AuxVariables]
[./aux]
family = MONOMIAL
order = THIRD
[../]
[]
[AuxKernels]
[./aux]
type = FunctionAux
variable = aux
execute_on = initial
function = 10*x*y
[../]
[]
[Problem]
type = FEProblem
solve = false
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = left
value = 1
[../]
[./right]
type = DirichletBC
variable = u
boundary = right
value = 2
[../]
[]
[Executioner]
type = Transient
num_steps = 1
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
hide = 'u'
exodus = true
[]
(modules/contact/test/tests/verification/patch_tests/ring_3/ring3_template1.i)
[GlobalParams]
order = SECOND
displacements = 'disp_x disp_y'
[]
[Mesh]
file = ring3_mesh.e
coord_type = RZ
[]
[Problem]
type = FEProblem
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[]
[AuxVariables]
[./stress_xx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zz]
order = CONSTANT
family = MONOMIAL
[../]
[./penetration]
[../]
[./saved_x]
[../]
[./saved_y]
[../]
[./diag_saved_x]
[../]
[./diag_saved_y]
[../]
[./inc_slip_x]
[../]
[./inc_slip_y]
[../]
[./accum_slip_x]
[../]
[./accum_slip_y]
[../]
[./tang_force_x]
[../]
[./tang_force_y]
[../]
[]
[Kernels]
[./TensorMechanics]
use_displaced_mesh = true
save_in = 'saved_x saved_y'
[../]
[]
[AuxKernels]
[./stress_xx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xx
index_i = 0
index_j = 0
execute_on = timestep_end
[../]
[./stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
execute_on = timestep_end
[../]
[./stress_xy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xy
index_i = 0
index_j = 1
execute_on = timestep_end
[../]
[./stress_zz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zz
index_i = 2
index_j = 2
execute_on = timestep_end
[../]
[./inc_slip_x]
type = PenetrationAux
variable = inc_slip_x
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./inc_slip_y]
type = PenetrationAux
variable = inc_slip_y
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./accum_slip_x]
type = PenetrationAux
variable = accum_slip_x
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./accum_slip_y]
type = PenetrationAux
variable = accum_slip_y
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./penetration]
type = PenetrationAux
variable = penetration
boundary = 3
paired_boundary = 4
[../]
[./tang_force_x]
type = PenetrationAux
variable = tang_force_x
quantity = tangential_force_x
boundary = 3
paired_boundary = 4
[../]
[./tang_force_y]
type = PenetrationAux
variable = tang_force_y
quantity = tangential_force_y
boundary = 3
paired_boundary = 4
[../]
[] # AuxKernels
[Postprocessors]
[./bot_react_x]
type = NodalSum
variable = saved_x
boundary = 1
[../]
[./bot_react_y]
type = NodalSum
variable = saved_y
boundary = 1
[../]
[./top_react_x]
type = NodalSum
variable = saved_x
boundary = 5
[../]
[./top_react_y]
type = NodalSum
variable = saved_y
boundary = 5
[../]
[./ref_resid_x]
type = NodalL2Norm
execute_on = timestep_end
variable = saved_x
[../]
[./ref_resid_y]
type = NodalL2Norm
execute_on = timestep_end
variable = saved_y
[../]
[./sigma_yy]
type = ElementAverageValue
variable = stress_yy
[../]
[./sigma_zz]
type = ElementAverageValue
variable = stress_zz
[../]
[./disp_x2]
type = NodalVariableValue
nodeid = 1
variable = disp_x
[../]
[./disp_x11]
type = NodalVariableValue
nodeid = 10
variable = disp_x
[../]
[./disp_y2]
type = NodalVariableValue
nodeid = 1
variable = disp_y
[../]
[./disp_y11]
type = NodalVariableValue
nodeid = 10
variable = disp_y
[../]
[./_dt]
type = TimestepSize
[../]
[./num_lin_it]
type = NumLinearIterations
[../]
[./num_nonlin_it]
type = NumNonlinearIterations
[../]
[]
[BCs]
[./bot_y]
type = DirichletBC
variable = disp_y
boundary = 1
value = 0.0
[../]
[./top_press]
type = Pressure
variable = disp_y
boundary = 5
factor = 109.89
[../]
[]
[Materials]
[./bot_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '1'
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./bot_strain]
type = ComputeAxisymmetricRZIncrementalStrain
block = '1'
[../]
[./bot_stress]
type = ComputeFiniteStrainElasticStress
block = '1'
[../]
[./top_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '2'
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./top_strain]
type = ComputeAxisymmetricRZIncrementalStrain
block = '2'
[../]
[./top_stress]
type = ComputeFiniteStrainElasticStress
block = '2'
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_factor_mat_solver_type'
petsc_options_value = 'lu superlu_dist'
petsc_options = '-mat_superlu_dist_iterrefine -mat_superlu_dist_replacetinypivot'
line_search = 'none'
nl_abs_tol = 1e-10
nl_rel_tol = 1e-9
l_max_its = 50
nl_max_its = 100
dt = 1.0
end_time = 1.0
num_steps = 10
dtmin = 1.0
l_tol = 1e-5
[]
[VectorPostprocessors]
[./x_disp]
type = NodalValueSampler
variable = disp_x
boundary = '1 3 4 5'
sort_by = x
[../]
[./cont_press]
type = NodalValueSampler
variable = contact_pressure
boundary = '3'
sort_by = x
[../]
[]
[Outputs]
print_linear_residuals = true
perf_graph = true
[./exodus]
type = Exodus
elemental_as_nodal = true
[../]
[./console]
type = Console
max_rows = 5
[../]
[./chkfile]
type = CSV
show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x11 disp_y11 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
execute_vector_postprocessors_on = timestep_end
[../]
[./outfile]
type = CSV
delimiter = ' '
execute_vector_postprocessors_on = none
[../]
[]
[Contact]
[./leftright]
secondary = 3
primary = 4
normalize_penalty = true
tangential_tolerance = 1e-3
penalty = 1e+9
[../]
[]
(test/tests/indicators/value_jump_indicator/value_jump_indicator_test.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
[]
[Adaptivity]
[./Indicators]
[./error]
type = ValueJumpIndicator
variable = something
[../]
[../]
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
[../]
[]
[ICs]
[./leftright]
type = BoundingBoxIC
variable = something
inside = 1
y2 = 1
y1 = 0
x2 = 0.5
x1 = 0
[../]
[]
[AuxVariables]
[./something]
order = CONSTANT
family = MONOMIAL
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = 'left'
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = 'right'
value = 1
[../]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
solve_type = PJFNK
[]
[Outputs]
exodus = true
[]
(test/tests/kokkos/tag/kokkos_2d_diffusion_tag_matrix.i)
[Mesh]
[square]
type = GeneratedMeshGenerator
nx = 2
ny = 2
dim = 2
[]
[]
[Variables]
[u]
order = FIRST
family = LAGRANGE
[]
[]
[AuxVariables]
[tag_variable1]
order = FIRST
family = LAGRANGE
[]
[tag_variable2]
order = FIRST
family = LAGRANGE
[]
[]
[KokkosKernels]
[diff]
type = KokkosDiffusion
variable = u
extra_matrix_tags = 'mat_tag1 mat_tag2'
[]
[]
[AuxKernels]
[TagMatrixAux1]
type = TagMatrixAux
variable = tag_variable1
v = u
matrix_tag = mat_tag1
[]
[TagMatrixAux2]
type = TagMatrixAux
variable = tag_variable2
v = u
matrix_tag = mat_tag2
[]
[]
[KokkosBCs]
[left]
type = KokkosDirichletBC
variable = u
boundary = 3
value = 0
extra_matrix_tags = mat_tag1
[]
[right]
type = KokkosDirichletBC
variable = u
boundary = 1
value = 1
extra_matrix_tags = mat_tag2
[]
[]
[Problem]
type = FEProblem
extra_tag_matrices = 'mat_tag1 mat_tag2'
[]
[Executioner]
type = Steady
solve_type = 'NEWTON'
[]
[Outputs]
exodus = true
[]
(test/tests/postprocessors/difference_pps/difference_depend_check.i)
[Mesh]
type = GeneratedMesh
dim = 2
xmin = 0
xmax = 1
ymin = 0
ymax = 1
nx = 2
ny = 2
[]
[Variables]
[./u]
[../]
[]
[AuxVariables]
[./v]
[../]
[]
[AuxKernels]
[./one]
type = ConstantAux
variable = v
value = 1
[../]
[]
[Postprocessors]
# This postprocessor is listed first on purpose to give the resolver something to do
[./diff]
type = DifferencePostprocessor
value1 = nodes
value2 = elems
execute_on = 'initial timestep_end'
[../]
[./nodes]
type = NumNodes
execute_on = 'initial timestep_end'
[../]
[./elems]
type = NumElements
execute_on = 'initial timestep_end'
[../]
[]
[Problem]
type = FEProblem
solve = false
kernel_coverage_check = false
[]
[Executioner]
type = Steady
[]
[Outputs]
csv = true
[]
(test/tests/misc/check_error/add_aux_variable_multiple_subdomain_test.i)
[Problem]
type = FEProblem
[]
[Mesh]
[BaseMesh]
type = GeneratedMeshGenerator
dim = 2
nx = 2
ny = 2
xmin = -2
xmax = +2
ymin = -1
ymax = +1
[]
[Box1]
type = SubdomainBoundingBoxGenerator
input = "BaseMesh"
block_id = 2
location = "INSIDE"
bottom_left = "-2 -1 0"
top_right = "0 0 0"
[]
[]
[Variables]
[u]
order = FIRST
family = LAGRANGE
[]
[]
[AuxVariables]
[q]
family = MONOMIAL
order = third
block = 2
[]
[]
[Kernels]
[diff]
type = Diffusion
variable = u
[]
[]
[BCs]
[left]
type = DirichletBC
variable = u
boundary = 3
value = 0
[]
[right]
type = DirichletBC
variable = u
boundary = 1
value = 1
[]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
[]
[Outputs]
file_base = out
[]
# Request AuxVariable "q" again. This time without block restriction.
# This would widen the scope of "q" by means of block-restriction. This is not allowed.
# Note: If this block were above [AuxVariables/q], no error would occour.
[MoreAuxVariables]
[q]
family = MONOMIAL
order = third
[]
[]
(test/tests/restart/restartable_types/restartable_types2.i)
###########################################################
# This is a simple test of the restart/recover capability.
# The test object "RestartableTypesChecker" is used
# to reload data from a previous simulation written out
# with the object "RestartableTypes".
#
# See "restartable_types.i"
#
# @Requirement F1.60
###########################################################
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = left
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = right
value = 1
[../]
[]
[UserObjects]
[./restartable_types]
type = RestartableTypesChecker
[../]
[]
[Problem]
type = FEProblem
solve = false
restart_file_base = restartable_types_out_cp/LATEST
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
(modules/phase_field/test/tests/initial_conditions/PolycrystalVoronoiVoidIC_periodic_fromfile.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 85
ny = 85
nz = 0
xmax = 250
ymax = 250
zmax = 0
elem_type = QUAD4
[]
[GlobalParams]
op_num = 8
var_name_base = gr
numbub = 15
bubspac = 22
radius = 8
int_width = 10
invalue = 1
outvalue = 0.1
file_name = 'grains.txt'
[]
[Variables]
[c]
[]
[w]
scaling = 1.0e4
[]
[PolycrystalVariables]
[]
[]
[ICs]
[PolycrystalICs]
[PolycrystalVoronoiVoidIC]
polycrystal_ic_uo = voronoi
[]
[]
[c_IC]
variable = c
type = PolycrystalVoronoiVoidIC
structure_type = voids
polycrystal_ic_uo = voronoi
[]
[]
[UserObjects]
[voronoi]
type = PolycrystalVoronoi
rand_seed = 12444
int_width = 0
[]
[]
[BCs]
[Periodic]
[all]
auto_direction = 'x y'
[]
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 0
[]
[Outputs]
exodus = true
[]
(modules/contact/test/tests/verification/patch_tests/cyl_3/cyl3_template1.i)
#
# This input file is a template for both the frictionless and glued test
# variations for the current problem geometry. In order to create an input
# file to run outside the runtest framework, look at the tests file and add the
# appropriate input file lines from the cli_args line.
#
[GlobalParams]
order = SECOND
displacements = 'disp_x disp_y'
[]
[Mesh]
file = cyl3_mesh.e
coord_type = RZ
[]
[Problem]
type = FEProblem
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[]
[AuxVariables]
[./stress_xx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zz]
order = CONSTANT
family = MONOMIAL
[../]
[./penetration]
[../]
[./saved_x]
[../]
[./saved_y]
[../]
[./diag_saved_x]
[../]
[./diag_saved_y]
[../]
[./inc_slip_x]
[../]
[./inc_slip_y]
[../]
[./accum_slip_x]
[../]
[./accum_slip_y]
[../]
[./tang_force_x]
[../]
[./tang_force_y]
[../]
[]
[Kernels]
[./TensorMechanics]
use_displaced_mesh = true
save_in = 'saved_x saved_y'
[../]
[]
[AuxKernels]
[./stress_xx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xx
index_i = 0
index_j = 0
execute_on = timestep_end
[../]
[./stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
execute_on = timestep_end
[../]
[./stress_xy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xy
index_i = 0
index_j = 1
execute_on = timestep_end
[../]
[./stress_zz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zz
index_i = 2
index_j = 2
execute_on = timestep_end
[../]
[./inc_slip_x]
type = PenetrationAux
variable = inc_slip_x
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./inc_slip_y]
type = PenetrationAux
variable = inc_slip_y
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./accum_slip_x]
type = PenetrationAux
variable = accum_slip_x
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./accum_slip_y]
type = PenetrationAux
variable = accum_slip_y
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./penetration]
type = PenetrationAux
variable = penetration
boundary = 3
paired_boundary = 4
[../]
[./tang_force_x]
type = PenetrationAux
variable = tang_force_x
quantity = tangential_force_x
boundary = 3
paired_boundary = 4
[../]
[./tang_force_y]
type = PenetrationAux
variable = tang_force_y
quantity = tangential_force_y
boundary = 3
paired_boundary = 4
[../]
[] # AuxKernels
[Postprocessors]
[./bot_react_x]
type = NodalSum
variable = saved_x
boundary = 1
[../]
[./bot_react_y]
type = NodalSum
variable = saved_y
boundary = 1
[../]
[./top_react_x]
type = NodalSum
variable = saved_x
boundary = 5
[../]
[./top_react_y]
type = NodalSum
variable = saved_y
boundary = 5
[../]
[./ref_resid_x]
type = NodalL2Norm
execute_on = timestep_end
variable = saved_x
[../]
[./ref_resid_y]
type = NodalL2Norm
execute_on = timestep_end
variable = saved_y
[../]
[./sigma_yy]
type = ElementAverageValue
variable = stress_yy
[../]
[./sigma_zz]
type = ElementAverageValue
variable = stress_zz
[../]
[./disp_x2]
type = NodalVariableValue
nodeid = 1
variable = disp_x
[../]
[./disp_x11]
type = NodalVariableValue
nodeid = 10
variable = disp_x
[../]
[./disp_y2]
type = NodalVariableValue
nodeid = 1
variable = disp_y
[../]
[./disp_y11]
type = NodalVariableValue
nodeid = 10
variable = disp_y
[../]
[./_dt]
type = TimestepSize
[../]
[./num_lin_it]
type = NumLinearIterations
[../]
[./num_nonlin_it]
type = NumNonlinearIterations
[../]
[]
[BCs]
[./bot_y]
type = DirichletBC
variable = disp_y
boundary = 1
value = 0.0
[../]
[./side_x]
type = DirichletBC
variable = disp_x
boundary = 2
value = 0.0
[../]
[./top_press]
type = Pressure
variable = disp_y
boundary = 5
factor = 109.89
[../]
[]
[Materials]
[./bot_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '1'
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./bot_strain]
type = ComputeAxisymmetricRZIncrementalStrain
block = '1'
[../]
[./bot_stress]
type = ComputeFiniteStrainElasticStress
block = '1'
[../]
[./top_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '2'
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./top_strain]
type = ComputeAxisymmetricRZIncrementalStrain
block = '2'
[../]
[./top_stress]
type = ComputeFiniteStrainElasticStress
block = '2'
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
line_search = 'none'
nl_abs_tol = 1e-7
nl_rel_tol = 1e-6
l_max_its = 100
nl_max_its = 1000
dt = 1.0
end_time = 1.0
num_steps = 10
dtmin = 1.0
l_tol = 1e-4
[]
[VectorPostprocessors]
[./x_disp]
type = NodalValueSampler
variable = disp_x
boundary = '1 3 4 5'
sort_by = x
[../]
[./cont_press]
type = NodalValueSampler
variable = contact_pressure
boundary = '3'
sort_by = x
[../]
[]
[Outputs]
print_linear_residuals = true
perf_graph = true
[./exodus]
type = Exodus
elemental_as_nodal = true
[../]
[./console]
type = Console
max_rows = 5
[../]
[./chkfile]
type = CSV
show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x11 disp_y11 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
execute_vector_postprocessors_on = timestep_end
[../]
[./outfile]
type = CSV
delimiter = ' '
execute_vector_postprocessors_on = none
[../]
[]
[Contact]
[./leftright]
secondary = 3
primary = 4
tangential_tolerance = 1e-3
penalty = 1e+9
[../]
[]
(test/tests/ics/integral_preserving_function_ic/sinusoidal_z.i)
[Mesh]
type = GeneratedMesh
dim = 3
nx = 5
ny = 5
nz = 20
xmax = 1.5
ymax = 1.7
zmax = 1.9
xmin = 0.0
ymin = 0.0
zmin = 0.0
[]
[Problem]
type = FEProblem
solve = false
[]
[AuxVariables]
[power]
family = MONOMIAL
order = CONSTANT
[]
[]
[ICs]
[power]
type = IntegralPreservingFunctionIC
variable = power
magnitude = 550.0
function = 'sin(pi * z / 1.9)'
integral = vol
[]
[]
[Postprocessors]
[vol]
type = FunctionElementIntegral
function = 'sin(pi * z / 1.9)'
execute_on = 'initial'
[]
[integrated_power] # should equal 550
type = ElementIntegralVariablePostprocessor
variable = power
[]
[]
[Executioner]
type = Steady
[]
[Outputs]
exodus = true
[]
(tutorials/darcy_thermo_mech/step07_adaptivity/problems/step7b_fine.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 30
ny = 3
xmax = 0.304 # Length of test chamber
ymax = 0.0257 # Test chamber radius
[]
coord_type = RZ
rz_coord_axis = X
uniform_refine = 3
[]
[Variables]
[pressure]
[]
[temperature]
initial_condition = 300 # Start at room temperature
[]
[]
[Kernels]
[darcy_pressure]
type = DarcyPressure
variable = pressure
[]
[heat_conduction]
type = ADHeatConduction
variable = temperature
[]
[heat_conduction_time_derivative]
type = ADHeatConductionTimeDerivative
variable = temperature
[]
[heat_convection]
type = DarcyAdvection
variable = temperature
pressure = pressure
[]
[]
[BCs]
[inlet_temperature]
type = FunctionDirichletBC
variable = temperature
boundary = left
function = 'if(t<0,350+50*t,350)'
[]
[outlet_temperature]
type = HeatConductionOutflow
variable = temperature
boundary = right
[]
[inlet]
type = DirichletBC
variable = pressure
boundary = left
value = 4000 # (Pa) From Figure 2 from paper. First data point for 1mm spheres.
[]
[outlet]
type = DirichletBC
variable = pressure
boundary = right
value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
[]
[]
[Materials/column]
type = PackedColumn
temperature = temperature
radius = 1
[]
[AuxVariables/velocity]
order = CONSTANT
family = MONOMIAL_VEC
[]
[AuxKernels/velocity]
type = DarcyVelocity
variable = velocity
execute_on = timestep_end
pressure = pressure
[]
[Problem]
type = FEProblem
[]
[Executioner]
type = Transient
end_time = 100
dt = 0.25
start_time = -1
solve_type = NEWTON
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
automatic_scaling = true
steady_state_tolerance = 1e-5
steady_state_detection = true
[TimeStepper]
type = FunctionDT
function = 'if(t<0,0.1,0.25)'
[]
[]
[Outputs]
exodus = true
[]
(test/tests/materials/generic_materials/generic_function_rank_two_tensor.i)
[Mesh]
type = GeneratedMesh
dim = 1
[]
[Problem]
type = FEProblem
solve = false
[]
[Functions]
[fcn_00]
type = ParsedFunction
expression = '1 + t'
[]
[fcn_10]
type = ParsedFunction
expression = '4 + t'
[]
[fcn_20]
type = ParsedFunction
expression = '7 + t'
[]
[fcn_01]
type = ParsedFunction
expression = '2 + t'
[]
[fcn_11]
type = ParsedFunction
expression = '5 + t'
[]
[fcn_21]
type = ParsedFunction
expression = '8 + t'
[]
[fcn_02]
type = ParsedFunction
expression = '3 + t'
[]
[fcn_12]
type = ParsedFunction
expression = '6 + t'
[]
[fcn_22]
type = ParsedFunction
expression = '9 + t'
[]
[]
[Materials]
[./tensor]
type = GenericFunctionRankTwoTensor
tensor_name = function
# tensor values are column major-ordered
tensor_functions = 'fcn_00 fcn_10 fcn_20 fcn_01 fcn_11 fcn_21 fcn_02 fcn_12 fcn_22'
outputs = all
[../]
[]
[Executioner]
type = Transient
num_steps = 2
[]
[Postprocessors]
[00]
type = ElementAverageValue
variable = function_00
[]
[01]
type = ElementAverageValue
variable = function_01
[]
[02]
type = ElementAverageValue
variable = function_02
[]
[10]
type = ElementAverageValue
variable = function_10
[]
[11]
type = ElementAverageValue
variable = function_11
[]
[12]
type = ElementAverageValue
variable = function_12
[]
[20]
type = ElementAverageValue
variable = function_20
[]
[21]
type = ElementAverageValue
variable = function_21
[]
[22]
type = ElementAverageValue
variable = function_22
[]
[]
[Outputs]
csv = true
[]
(modules/stochastic_tools/test/tests/surrogates/pod_rb/internal/sub.i)
[Problem]
type = FEProblem
extra_tag_vectors = 'diff react bodyf'
[]
[Mesh]
type = GeneratedMesh
dim = 1
nx = 15
xmax = 10
[]
[Variables]
[u]
[]
[]
[Kernels]
[diffusion]
type = MatDiffusion
variable = u
diffusivity = k
extra_vector_tags = 'diff'
[]
[reaction]
type = MaterialReaction
variable = u
coefficient = alpha
extra_vector_tags = 'react'
[]
[source]
type = BodyForce
variable = u
value = 1.0
extra_vector_tags = 'bodyf'
[]
[]
[Materials]
[k]
type = GenericConstantMaterial
prop_names = k
prop_values = 1.0
[]
[alpha]
type = GenericConstantMaterial
prop_names = alpha
prop_values = 1.0
[]
[]
[BCs]
[left]
type = DirichletBC
variable = u
boundary = left
value = 0
[]
[right]
type = DirichletBC
variable = u
boundary = right
value = 0
[]
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Controls]
[stochastic]
type = SamplerReceiver
[]
[]
(test/tests/meshgenerators/flip_sideset_generator/flux_flip_3D.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 3
nx = 3
ny = 3
nz = 3
xmax = 3
ymax = 3
zmax = 3
[]
[subdomains]
type = ParsedSubdomainMeshGenerator
input = gmg
combinatorial_geometry = 'x < 1 & y > 1 & y < 2'
block_id = 1
[]
[sideset]
type = ParsedGenerateSideset
input = subdomains
combinatorial_geometry = 'z < 1'
included_subdomains = '1'
normal = '1 0 0'
new_sideset_name = interior
[]
[flip]
type = FlipSidesetGenerator
input = sideset
boundary = interior
[]
[]
[AuxVariables]
[u]
[]
[]
[AuxKernels]
[diffusion]
type = FunctionAux
variable = u
function = func
[]
[]
[Functions]
[func]
type = ParsedFunction
expression = x+y+z
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Postprocessors]
[flux]
type = SideDiffusiveFluxIntegral
variable = u
boundary = interior
diffusivity = 1
[]
[area]
type = AreaPostprocessor
boundary = interior
[]
[]
[Executioner]
type = Steady
[]
[Outputs]
csv = true
[]
(test/tests/transfers/multiapp_copy_transfer/aux_to_primary/sub.i)
[Problem]
type = FEProblem
solve = false
[]
[Mesh]
type = GeneratedMesh
dim = 2
[]
[Variables/sub]
initial_condition = 1980
[]
[Executioner]
type = Transient
[]
[Outputs]
execute_on = 'FINAL'
exodus = true
[]
(modules/phase_field/test/tests/initial_conditions/PolycrystalVoronoi_fromfile.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 40
ny = 40
nz = 0
xmax = 250
ymax = 250
zmax = 0
elem_type = QUAD4
[]
[GlobalParams]
op_num = 8
var_name_base = gr
[]
[Variables]
[PolycrystalVariables]
[]
[]
[ICs]
[PolycrystalICs]
[PolycrystalColoringIC]
polycrystal_ic_uo = voronoi
[]
[]
[]
[UserObjects]
[voronoi]
type = PolycrystalVoronoi
coloring_algorithm = jp
file_name = 'grains.txt'
[]
[]
[BCs]
[Periodic]
[all]
auto_direction = 'x y'
[]
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 0
[]
[Outputs]
exodus = true
[]
(test/tests/functions/image_function/image_3d_subset.i)
[Mesh]
type = GeneratedMesh
dim = 3
nx = 20
ny = 20
nz = 6
zmax = 0.3
[]
[Variables]
[u]
[]
[]
[Functions]
[image_func]
type = ImageFunction
file_base = stack/test
file_suffix = png
file_range = '0 5'
[]
[]
[ICs]
[u_ic]
type = FunctionIC
function = image_func
variable = u
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 1
dt = 0.1
[]
[Outputs]
exodus = true
[]
(tutorials/darcy_thermo_mech/step05_heat_conduction/problems/step5c_outflow.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 100
ny = 10
xmax = 0.304 # Length of test chamber
ymax = 0.0257 # Test chamber radius
[]
coord_type = RZ
rz_coord_axis = X
[]
[Variables]
[temperature]
initial_condition = 300 # Start at room temperature
[]
[]
[Kernels]
[heat_conduction]
type = ADHeatConduction
variable = temperature
[]
[heat_conduction_time_derivative]
type = ADHeatConductionTimeDerivative
variable = temperature
[]
[]
[BCs]
[inlet_temperature]
type = DirichletBC
variable = temperature
boundary = left
value = 350 # (K)
[]
[outlet_temperature]
type = HeatConductionOutflow
variable = temperature
boundary = right
[]
[]
[Materials/steel]
type = ADGenericConstantMaterial
prop_names = 'thermal_conductivity specific_heat density'
prop_values = '18 0.466 8000' # W/m*K, J/kg-K, kg/m^3 @ 296K
[]
[Problem]
type = FEProblem
[]
[Executioner]
type = Transient
num_steps = 10
solve_type = NEWTON
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(test/tests/kokkos/auxkernels/pp_depend/kokkos_pp_depend.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
[]
[Variables]
[u]
[]
[]
[AuxVariables]
[pp_aux]
[]
[]
[Functions]
[t_func]
type = ParsedFunction
expression = t
[]
[]
[KokkosKernels]
[diff]
type = KokkosCoefDiffusion
variable = u
coef = 0.01
[]
[]
[KokkosAuxKernels]
[pp_aux]
type = KokkosPostprocessorAux
variable = pp_aux
execute_on = timestep_end
pp = t_pp
[]
[]
[KokkosBCs]
[left]
type = KokkosDirichletBC
variable = u
boundary = left
value = 0
[]
[right]
type = KokkosDirichletBC
variable = u
boundary = right
value = 1
[]
[]
[Postprocessors]
[t_pp]
type = FunctionValuePostprocessor
function = t_func
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
solve_type = PJFNK
dt = 1
num_steps = 5
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(modules/contact/test/tests/verification/patch_tests/cyl_4/cyl4_template1.i)
[GlobalParams]
order = SECOND
displacements = 'disp_x disp_y'
[]
[Mesh]
file = cyl4_mesh.e
coord_type = RZ
[]
[Problem]
type = FEProblem
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[]
[AuxVariables]
[./stress_xx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zz]
order = CONSTANT
family = MONOMIAL
[../]
[./penetration]
[../]
[./saved_x]
[../]
[./saved_y]
[../]
[./diag_saved_x]
[../]
[./diag_saved_y]
[../]
[./inc_slip_x]
[../]
[./inc_slip_y]
[../]
[./accum_slip_x]
[../]
[./accum_slip_y]
[../]
[./tang_force_x]
[../]
[./tang_force_y]
[../]
[]
[Kernels]
[./TensorMechanics]
use_displaced_mesh = true
save_in = 'saved_x saved_y'
[../]
[]
[AuxKernels]
[./stress_xx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xx
index_i = 0
index_j = 0
execute_on = timestep_end
[../]
[./stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
execute_on = timestep_end
[../]
[./stress_xy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xy
index_i = 0
index_j = 1
execute_on = timestep_end
[../]
[./stress_zz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zz
index_i = 2
index_j = 2
execute_on = timestep_end
[../]
[./inc_slip_x]
type = PenetrationAux
variable = inc_slip_x
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./inc_slip_y]
type = PenetrationAux
variable = inc_slip_y
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./accum_slip_x]
type = PenetrationAux
variable = accum_slip_x
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./accum_slip_y]
type = PenetrationAux
variable = accum_slip_y
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./penetration]
type = PenetrationAux
variable = penetration
boundary = 3
paired_boundary = 4
[../]
[./tang_force_x]
type = PenetrationAux
variable = tang_force_x
quantity = tangential_force_x
boundary = 3
paired_boundary = 4
[../]
[./tang_force_y]
type = PenetrationAux
variable = tang_force_y
quantity = tangential_force_y
boundary = 3
paired_boundary = 4
[../]
[] # AuxKernels
[Postprocessors]
[./bot_react_x]
type = NodalSum
variable = saved_x
boundary = 1
[../]
[./bot_react_y]
type = NodalSum
variable = saved_y
boundary = 1
[../]
[./top_react_x]
type = NodalSum
variable = saved_x
boundary = 5
[../]
[./top_react_y]
type = NodalSum
variable = saved_y
boundary = 5
[../]
[./ref_resid_x]
type = NodalL2Norm
execute_on = timestep_end
variable = saved_x
[../]
[./ref_resid_y]
type = NodalL2Norm
execute_on = timestep_end
variable = saved_y
[../]
[./stress_yy]
type = ElementAverageValue
variable = stress_yy
[../]
[./stress_zz]
type = ElementAverageValue
variable = stress_zz
[../]
[./disp_x16]
type = NodalVariableValue
nodeid = 15
variable = disp_x
[../]
[./disp_x9]
type = NodalVariableValue
nodeid = 8
variable = disp_x
[../]
[./disp_y16]
type = NodalVariableValue
nodeid = 15
variable = disp_y
[../]
[./disp_y9]
type = NodalVariableValue
nodeid = 8
variable = disp_y
[../]
[./_dt]
type = TimestepSize
[../]
[./num_lin_it]
type = NumLinearIterations
[../]
[./num_nonlin_it]
type = NumNonlinearIterations
[../]
[]
[BCs]
[./bot_y]
type = DirichletBC
variable = disp_y
boundary = 1
value = 0.0
[../]
[./side_x]
type = DirichletBC
variable = disp_x
boundary = 2
value = 0.0
[../]
[./top_press]
type = Pressure
variable = disp_y
boundary = 5
factor = 109.89
[../]
[]
[Materials]
[./bot_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '1'
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./bot_strain]
type = ComputeAxisymmetricRZIncrementalStrain
block = '1'
[../]
[./bot_stress]
type = ComputeFiniteStrainElasticStress
block = '1'
[../]
[./top_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '2'
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./top_strain]
type = ComputeAxisymmetricRZIncrementalStrain
block = '2'
[../]
[./top_stress]
type = ComputeFiniteStrainElasticStress
block = '2'
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_factor_mat_solver_type'
petsc_options_value = 'lu superlu_dist'
line_search = 'none'
nl_abs_tol = 1e-7
nl_rel_tol = 1e-6
l_max_its = 100
nl_max_its = 1000
dt = 1.0
end_time = 1.0
num_steps = 10
dtmin = 1.0
l_tol = 1e-4
[]
[VectorPostprocessors]
[./x_disp]
type = NodalValueSampler
variable = disp_x
boundary = '1 3 4 5'
sort_by = x
[../]
[./cont_press]
type = NodalValueSampler
variable = contact_pressure
boundary = '3'
sort_by = x
[../]
[]
[Outputs]
print_linear_residuals = true
perf_graph = true
[./exodus]
type = Exodus
elemental_as_nodal = true
[../]
[./console]
type = Console
max_rows = 5
[../]
[./chkfile]
type = CSV
show = 'bot_react_x bot_react_y disp_x9 disp_y9 disp_x16 disp_y16 stress_yy stress_zz top_react_x top_react_y x_disp cont_press'
execute_vector_postprocessors_on = timestep_end
[../]
[./outfile]
type = CSV
delimiter = ' '
execute_vector_postprocessors_on = none
[../]
[]
[Contact]
[./leftright]
secondary = 3
primary = 4
tangential_tolerance = 1e-3
penalty = 1e+9
[../]
[]
(modules/misc/test/tests/sensor_postprocessor/time_delay_test.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 10
ny = 10
[]
coord_type = RZ
rz_coord_axis = X
[]
[Variables]
[temperature]
initial_condition = 293 # Start at room temperature
[]
[]
[Functions]
[delay_func]
type = PiecewiseLinear
x = '0 0.5 1'
y = '0.005 0.01 0.2'
[]
[]
[Kernels]
[heat_conduction]
type = ADMatDiffusion
variable = temperature
diffusivity = thermal_conductivity
[]
[heat_conduction_time_derivative]
type = ADTimeDerivative
variable = temperature
[]
[]
[BCs]
[inlet_temperature]
type = DirichletBC
variable = temperature
boundary = left
value = 293 # (K)
[]
[outlet_temperature]
type = DirichletBC
variable = temperature
boundary = right
value = 650 # (K)
[]
[]
[Materials]
[steel]
type = ADGenericConstantMaterial
prop_names = 'thermal_conductivity specific_heat density'
prop_values = '1 0.466 80' # W/m*K, J/kg-K, kg/m^3 @ 296K
[]
[]
[Problem]
type = FEProblem
[]
[Postprocessors]
[input_signal_pp]
type = ElementAverageValue
variable = temperature
#execute_on = 'initial timestep_begin'
[]
[general_sensor_pp]
type = GeneralSensorPostprocessor
execute_on = 'initial timestep_end'
input_signal = input_signal_pp
noise_std_dev_function = '0'
delay_function = delay_func
drift_function = '0'
efficiency_function = '1'
signalToNoise_function = '0'
uncertainty_std_dev_function = '0'
R_function = '0'
proportional_weight = '1'
integral_weight = '1'
seed = 999
[]
[]
[Executioner]
type = Transient
line_search = none
dt = 0.01
num_steps = 200
nl_rel_tol = 1e-02
nl_abs_tol = 1e-8
solve_type = NEWTON
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
csv = true
exodus = false
[]
(tutorials/darcy_thermo_mech/step05_heat_conduction/problems/step5a_steady.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 100
ny = 10
xmax = 0.304 # Length of test chamber
ymax = 0.0257 # Test chamber radius
[]
coord_type = RZ
rz_coord_axis = X
[]
[Variables]
[temperature]
[]
[]
[Kernels]
[heat_conduction]
type = ADHeatConduction
variable = temperature
[]
[]
[BCs]
[inlet_temperature]
type = DirichletBC
variable = temperature
boundary = left
value = 350 # (K)
[]
[outlet_temperature]
type = DirichletBC
variable = temperature
boundary = right
value = 300 # (K)
[]
[]
[Materials/steel]
type = ADGenericConstantMaterial
prop_names = thermal_conductivity
prop_values = 18 # K: (W/m*K) from wikipedia @296K
[]
[Problem]
type = FEProblem
[]
[Executioner]
type = Steady
solve_type = NEWTON
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(test/tests/transfers/multiapp_copy_transfer/linear_lagrange_to_sub/sub.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
[]
[Variables]
[./u]
[../]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
[]
[Outputs]
exodus = true
[]
(test/tests/postprocessors/element_extreme_value/element_proxy_extreme_value.i)
[Problem]
type = FEProblem
solve = false
[]
[Mesh]
type = GeneratedMesh
dim = 2
nx = 40
ny = 40
[]
[AuxVariables]
[u]
[]
[w]
[]
[v_x]
[]
[v_y]
[]
[]
[AuxKernels]
[u]
type = FunctionAux
variable = u
function = u
[]
[w]
type = FunctionAux
variable = w
function = w
[]
[v_x]
type = FunctionAux
variable = v_x
function = v_x
[]
[v_y]
type = FunctionAux
variable = v_y
function = v_y
[]
[]
[Functions]
[u] # reaches a maximum value at (0.5, 0.6)
type = ParsedFunction
expression = 'sin(pi*x)*sin(pi*y/1.2)'
[]
[w] # reaches a minium expression at (0.7, 0.8)
type = ParsedFunction
expression = '-sin(pi*x/1.4)*sin(pi*y/1.6)'
[]
[v_x]
type = ParsedFunction
expression = 'x'
[]
[v_y]
type = ParsedFunction
expression = 'y'
[]
[]
[Postprocessors]
# because we set v_x and v_y equal to the x and y coordinates, these two postprocessors
# should just return the point at which u reaches a maximum value
[max_v_from_proxy_x]
type = ElementExtremeValue
variable = v_x
proxy_variable = u
value_type = max
[]
[max_v_from_proxy_y]
type = ElementExtremeValue
variable = v_y
proxy_variable = u
value_type = max
[]
# because we set v_x and v_y equal to the x and y coordinates, these two postprocessors
# should just return the point at which w reaches a minimum value
[min_v_from_proxy_x]
type = ElementExtremeValue
variable = v_x
proxy_variable = w
value_type = min
[]
[min_v_from_proxy_y]
type = ElementExtremeValue
variable = v_y
proxy_variable = w
value_type = min
[]
[]
[Executioner]
type = Steady
# increase the quadrature order to get more quadrature points so that were closer
# to hitting the expect max/min
[Quadrature]
type = GAUSS
order = SECOND
[]
[]
[Outputs]
exodus = true
csv = true
[]
(modules/phase_field/test/tests/initial_conditions/PolycrystalVoronoiVoidIC_notperiodic.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 85
ny = 85
nz = 0
xmax = 250
ymax = 250
zmax = 0
elem_type = QUAD4
[]
[GlobalParams]
op_num = 5
grain_num = 5
var_name_base = gr
numbub = 20
bubspac = 22
radius = 8
int_width = 10
invalue = 1
outvalue = 0.1
[]
[Variables]
[c]
[]
[w]
scaling = 1.0e4
[]
[PolycrystalVariables]
[]
[]
[ICs]
[PolycrystalICs]
[PolycrystalVoronoiVoidIC]
polycrystal_ic_uo = voronoi
[]
[]
[c_IC]
variable = c
type = PolycrystalVoronoiVoidIC
structure_type = voids
polycrystal_ic_uo = voronoi
[]
[]
[UserObjects]
[voronoi]
type = PolycrystalVoronoi
rand_seed = 12444
int_width = 0
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 0
[]
[Outputs]
exodus = true
[]
(modules/phase_field/test/tests/initial_conditions/RampIC.i)
[Mesh]
type = GeneratedMesh
dim = 1
nx = 30
xmax = 13
xmin = -5
elem_type = EDGE
[]
[Variables]
[./c]
order = FIRST
family = LAGRANGE
scaling = 1e1
[./InitialCondition]
type = RampIC
variable = c
value_left = -0.2
value_right = 1.3
[../]
[../]
[]
[Problem]
type = FEProblem
solve = false
kernel_coverage_check = false
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
execute_on = 'timestep_end'
exodus = true
[]
(test/tests/transfers/multiapp_copy_transfer/block_restriction/bi_direction.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
xmin = 0
xmax = 2
ymin = 0
ymax = 2
nx = 4
ny = 4
# Designed to have non-complete overlap
subdomain_ids = '1 1 1 1
2 2 2 1
1 2 2 1
1 1 2 1'
[]
[]
[Variables]
[to_sub]
family = MONOMIAL
order = CONSTANT
initial_condition = 1
[]
[from_sub]
family = MONOMIAL
order = CONSTANT
initial_condition = 2
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 2
[]
[MultiApps]
[sub]
type = TransientMultiApp
input_files = sub.i
[]
[]
[Transfers]
[to_sub]
type = MultiAppCopyTransfer
source_variable = to_sub
variable = from_main
to_multi_app = sub
[]
[from_sub]
type = MultiAppCopyTransfer
source_variable = to_main
variable = from_sub
from_multi_app = sub
[]
[]
[Outputs]
exodus = true
[]
(test/tests/geomsearch/patch_update_strategy/always.i)
[Mesh]
type = FileMesh
file = long_range.e
dim = 2
patch_update_strategy = always
displacements = 'disp_x disp_y'
[]
[Variables]
[./u]
block = right
[../]
[]
[AuxVariables]
[./linear_field]
[../]
[./receiver]
# The field to transfer into
[../]
[./disp_x]
[../]
[./disp_y]
[../]
[./elemental_reciever]
order = CONSTANT
family = MONOMIAL
[../]
[]
[Kernels]
[./diff]
type = CoefDiffusion
variable = u
coef = 1
[../]
[./time]
type = TimeDerivative
variable = u
[../]
[]
[AuxKernels]
[./linear_in_y]
# This just gives us something to transfer that varies in y so we can ensure the transfer is working properly...
type = FunctionAux
variable = linear_field
function = y
execute_on = initial
[../]
[./right_to_left]
type = GapValueAux
variable = receiver
paired_variable = linear_field
paired_boundary = rightleft
execute_on = timestep_end
boundary = leftright
[../]
[./y_displacement]
type = FunctionAux
variable = disp_y
function = t
execute_on = 'linear timestep_begin'
block = left
[../]
[./elemental_right_to_left]
type = GapValueAux
variable = elemental_reciever
paired_variable = linear_field
paired_boundary = rightleft
boundary = leftright
[../]
[]
[BCs]
[./top]
type = DirichletBC
variable = u
boundary = righttop
value = 1
[../]
[./bottom]
type = DirichletBC
variable = u
boundary = rightbottom
value = 0
[../]
[]
[Problem]
type = FEProblem
kernel_coverage_check = false
[]
[Executioner]
type = Transient
num_steps = 30
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(test/tests/transfers/multiapp_copy_transfer/array_variable_transfer/parent.i)
[Problem]
use_hash_table_matrix_assembly = true
[]
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
[]
[Variables]
# Array variable with two components
[v]
order = FIRST
family = LAGRANGE
components = 2
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 1
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[MultiApps]
[./sub]
type = FullSolveMultiApp
input_files = sub.i
execute_on = initial
[../]
[]
[Transfers]
# Transfers all components together on the same mesh.
[./from_sub]
type = MultiAppCopyTransfer
source_variable = u
variable = v
from_multi_app = sub
[../]
[]
[Outputs]
exodus = true
[]
(test/tests/multiapps/command_line/parent_wrong_size.i)
[Mesh]
type = GeneratedMesh
dim = 1
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
[]
[MultiApps]
[sub]
type = FullSolveMultiApp
positions = '0 0 0
1 1 1'
input_files = 'sub.i'
cli_args = 'Mesh/xmax=1.1 Mesh/xmax=1.2 Mesh/xmax=1.3'
[]
[]
(test/tests/postprocessors/element_extreme_functor_value/extreme_proxy_value.i)
[Problem]
type = FEProblem
solve = false
[]
[Mesh]
type = GeneratedMesh
dim = 2
nx = 40
ny = 40
[]
[AuxVariables]
[u]
type = MooseVariableFVReal
[]
[w]
type = MooseVariableFVReal
[]
[v_x]
type = MooseVariableFVReal
[]
[v_y]
type = MooseVariableFVReal
[]
[]
[AuxKernels]
[u]
type = FunctionAux
variable = u
function = u_f
[]
[w]
type = FunctionAux
variable = w
function = w_f
[]
[v_x]
type = FunctionAux
variable = v_x
function = v_x_f
[]
[v_y]
type = FunctionAux
variable = v_y
function = v_y_f
[]
[]
[Functions]
[u_f] # reaches a maximum value at (0.5, 0.6)
type = ParsedFunction
expression = 'sin(pi*x)*sin(pi*y/1.2)'
[]
[w_f] # reaches a minium expression at (0.7, 0.8)
type = ParsedFunction
expression = '-sin(pi*x/1.4)*sin(pi*y/1.6)'
[]
[v_x_f]
type = ParsedFunction
expression = 'x'
[]
[v_y_f]
type = ParsedFunction
expression = 'y'
[]
[]
[Postprocessors]
[max_u]
type = ADElementExtremeFunctorValue
functor = 'u'
[]
[min_w_f]
type = ElementExtremeFunctorValue
functor = 'w_f'
value_type = min
[]
[max_v_x]
type = ADElementExtremeFunctorValue
functor = 'v_x'
[]
[min_v_y]
type = ADElementExtremeFunctorValue
functor = 'v_y'
value_type = min
[]
# because we set v_x and v_y equal to the x and y coordinates, these two postprocessors
# should just return the point at which u reaches a maximum value
[max_v_from_proxy_x]
type = ADElementExtremeFunctorValue
functor = v_x
proxy_functor = u
value_type = max
[]
[max_v_from_proxy_y]
type = ADElementExtremeFunctorValue
functor = v_y
proxy_functor = u
value_type = max
[]
# because we set v_x and v_y equal to the x and y coordinates, these two postprocessors
# should just return the point at which w reaches a minimum value
[min_v_from_proxy_x]
type = ADElementExtremeFunctorValue
functor = v_x
proxy_functor = w
value_type = min
[]
[min_v_from_proxy_y]
type = ADElementExtremeFunctorValue
functor = v_y
proxy_functor = w
value_type = min
[]
[]
[Executioner]
type = Steady
[]
[Outputs]
csv = true
[]
(tutorials/darcy_thermo_mech/step03_darcy_material/problems/step3.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator # Can generate simple lines, rectangles and rectangular prisms
dim = 2 # Dimension of the mesh
nx = 100 # Number of elements in the x direction
ny = 10 # Number of elements in the y direction
xmax = 0.304 # Length of test chamber
ymax = 0.0257 # Test chamber radius
[]
coord_type = RZ # Axisymmetric RZ
rz_coord_axis = X # Which axis the symmetry is around
[]
[Variables/pressure]
# Adds a Linear Lagrange variable by default
[]
[Kernels/darcy_pressure]
type = DarcyPressure
variable = pressure
[]
[BCs]
[inlet]
type = DirichletBC # Simple u=value BC
variable = pressure # Variable to be set
boundary = left # Name of a sideset in the mesh
value = 4000 # (Pa) From Figure 2 from paper. First data point for 1mm spheres.
[]
[outlet]
type = DirichletBC
variable = pressure
boundary = right
value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
[]
[]
[Materials/column]
type = PackedColumn
[]
[Problem]
type = FEProblem # This is the "normal" type of Finite Element Problem in MOOSE
[]
[Executioner]
type = Steady # Steady state problem
solve_type = NEWTON # Perform a Newton solve, uses AD to compute Jacobian terms
petsc_options_iname = '-pc_type -pc_hypre_type' # PETSc option pairs with values below
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true # Output Exodus format
[]
(test/tests/markers/block_restricted/marker_block.i)
[Mesh]
[gen]
type = GeneratedMeshGenerator
dim = 2
nx = 2
ny = 2
xmax = 5
ymax = 5
[]
[./lower_block]
input = gen
type = SubdomainBoundingBoxGenerator
top_right = '5 3 0'
bottom_left = '0 0 0'
block_id = 0
[../]
[./upper_block]
input = lower_block
type = SubdomainBoundingBoxGenerator
top_right = '5 5 0'
bottom_left = '0 3 0'
block_id = 1
[../]
[]
[Adaptivity]
initial_steps = 2
initial_marker = marker
[./Markers]
[./marker]
type = UniformMarker
block = 0
mark = REFINE
[../]
[../]
[]
[Variables]
[./u]
initial_condition = 0
[../]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
[]
[Outputs]
exodus = true
[]
(modules/contact/test/tests/verification/patch_tests/ring_4/ring4_mu_0_2_pen.i)
[GlobalParams]
order = SECOND
displacements = 'disp_x disp_y'
[]
[Mesh]
file = ring4_mesh.e
coord_type = RZ
[]
[Problem]
type = FEProblem
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[]
[AuxVariables]
[./stress_xx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zz]
order = CONSTANT
family = MONOMIAL
[../]
[./penetration]
[../]
[./saved_x]
[../]
[./saved_y]
[../]
[./diag_saved_x]
[../]
[./diag_saved_y]
[../]
[./inc_slip_x]
[../]
[./inc_slip_y]
[../]
[./accum_slip_x]
[../]
[./accum_slip_y]
[../]
[./tang_force_x]
[../]
[./tang_force_y]
[../]
[]
[Kernels]
[./TensorMechanics]
use_displaced_mesh = true
save_in = 'saved_x saved_y'
[../]
[]
[AuxKernels]
[./stress_xx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xx
index_i = 0
index_j = 0
execute_on = timestep_end
[../]
[./stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
execute_on = timestep_end
[../]
[./stress_xy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xy
index_i = 0
index_j = 1
execute_on = timestep_end
[../]
[./stress_zz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zz
index_i = 2
index_j = 2
execute_on = timestep_end
[../]
[./inc_slip_x]
type = PenetrationAux
variable = inc_slip_x
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./inc_slip_y]
type = PenetrationAux
variable = inc_slip_y
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./accum_slip_x]
type = PenetrationAux
variable = accum_slip_x
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./accum_slip_y]
type = PenetrationAux
variable = accum_slip_y
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./penetration]
type = PenetrationAux
variable = penetration
boundary = 3
paired_boundary = 4
[../]
[./tang_force_x]
type = PenetrationAux
variable = tang_force_x
quantity = tangential_force_x
boundary = 3
paired_boundary = 4
[../]
[./tang_force_y]
type = PenetrationAux
variable = tang_force_y
quantity = tangential_force_y
boundary = 3
paired_boundary = 4
[../]
[] # AuxKernels
[Postprocessors]
[./bot_react_x]
type = NodalSum
variable = saved_x
boundary = 1
[../]
[./bot_react_y]
type = NodalSum
variable = saved_y
boundary = 1
[../]
[./top_react_x]
type = NodalSum
variable = saved_x
boundary = 5
[../]
[./top_react_y]
type = NodalSum
variable = saved_y
boundary = 5
[../]
[./ref_resid_x]
type = NodalL2Norm
execute_on = timestep_end
variable = saved_x
[../]
[./ref_resid_y]
type = NodalL2Norm
execute_on = timestep_end
variable = saved_y
[../]
[./sigma_yy]
type = ElementAverageValue
variable = stress_yy
[../]
[./sigma_zz]
type = ElementAverageValue
variable = stress_zz
[../]
[./disp_x16]
type = NodalVariableValue
nodeid = 15
variable = disp_x
[../]
[./disp_x9]
type = NodalVariableValue
nodeid = 8
variable = disp_x
[../]
[./disp_y16]
type = NodalVariableValue
nodeid = 15
variable = disp_y
[../]
[./disp_y9]
type = NodalVariableValue
nodeid = 8
variable = disp_y
[../]
[./_dt]
type = TimestepSize
[../]
[./num_lin_it]
type = NumLinearIterations
[../]
[./num_nonlin_it]
type = NumNonlinearIterations
[../]
[]
[BCs]
[./bot_y]
type = DirichletBC
variable = disp_y
boundary = 1
value = 0.0
[../]
[./top_press]
type = Pressure
variable = disp_y
boundary = 5
factor = 109.89
[../]
[]
[Materials]
[./bot_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '1'
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./bot_strain]
type = ComputeAxisymmetricRZIncrementalStrain
block = '1'
[../]
[./bot_stress]
type = ComputeFiniteStrainElasticStress
block = '1'
[../]
[./top_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '2'
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./top_strain]
type = ComputeAxisymmetricRZIncrementalStrain
block = '2'
[../]
[./top_stress]
type = ComputeFiniteStrainElasticStress
block = '2'
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_factor_mat_solver_type'
petsc_options_value = 'lu superlu_dist'
line_search = 'none'
nl_abs_tol = 1e-9
nl_rel_tol = 1e-8
l_max_its = 100
nl_max_its = 1000
dt = 1.0
end_time = 1.0
num_steps = 10
dtmin = 1.0
l_tol = 1e-3
[]
[VectorPostprocessors]
[./x_disp]
type = NodalValueSampler
variable = disp_x
boundary = '1 3 4 5'
sort_by = x
[../]
[./cont_press]
type = NodalValueSampler
variable = contact_pressure
boundary = '3'
sort_by = x
[../]
[]
[Outputs]
file_base = ring4_mu_0_2_pen_out
print_linear_residuals = true
perf_graph = true
[./exodus]
type = Exodus
elemental_as_nodal = true
[../]
[./console]
type = Console
max_rows = 5
[../]
[./chkfile]
type = CSV
file_base = ring4_mu_0_2_pen_check
show = 'bot_react_x bot_react_y disp_x9 disp_y9 disp_x16 disp_y16 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
execute_vector_postprocessors_on = timestep_end
[../]
[./outfile]
type = CSV
delimiter = ' '
execute_vector_postprocessors_on = none
[../]
[]
[Contact]
[./leftright]
secondary = 3
primary = 4
model = coulomb
formulation = penalty
normalize_penalty = true
friction_coefficient = 0.2
tangential_tolerance = 1e-3
penalty = 1e+9
[../]
[]
(test/tests/multiapps/command_line/parent_common.i)
[Mesh]
type = GeneratedMesh
dim = 1
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
[]
[MultiApps]
[sub]
type = FullSolveMultiApp
positions = '0 0 0
1 1 1'
input_files = 'sub.i'
cli_args = 'Mesh/mesh/type=GeneratedMeshGenerator;Mesh/mesh/dim=1;Mesh/mesh/nx=42'
[]
[]
(test/tests/misc/check_error/uo_reporter_name_collision_test.i)
[Mesh]
type = GeneratedMesh
dim = 1
xmin = 0
xmax = 1
nx = 5
[]
[Problem]
type = FEProblem
solve = false
[]
[UserObjects]
[ud]
type = MTUserObject
scalar = 2
vector = '9 7 5'
[]
[]
[Executioner]
type = Steady
[]
[Reporters]
[ud]
type = ConstantReporter
[]
[]
(test/tests/preconditioners/pbp/pbp_test.i)
[Mesh]
[./square]
type = GeneratedMeshGenerator
nx = 2
ny = 2
dim = 2
[../]
# init_unif_refine = 6
[]
[Variables]
active = 'u v'
[./u]
order = FIRST
family = LAGRANGE
[../]
[./v]
order = FIRST
family = LAGRANGE
[../]
[]
[Preconditioning]
[./PBP]
type = PBP
solve_order = 'u v'
preconditioner = 'LU LU'
off_diag_row = 'v'
off_diag_column = 'u'
petsc_options = '' # Test petsc options in PBP block
[../]
[]
[Problem]
type = FEProblem
error_on_jacobian_nonzero_reallocation = true
[]
[Kernels]
active = 'diff_u conv_v diff_v'
[./diff_u]
type = Diffusion
variable = u
[../]
[./conv_v]
type = CoupledForce
variable = v
v = u
[../]
[./diff_v]
type = Diffusion
variable = v
[../]
[]
[BCs]
active = 'left_u right_u left_v'
[./left_u]
type = DirichletBC
variable = u
boundary = 3
value = 0
[../]
[./right_u]
type = DirichletBC
variable = u
boundary = 1
value = 100
[../]
[./left_v]
type = DirichletBC
variable = v
boundary = 3
value = 0
[../]
[./right_v]
type = DirichletBC
variable = v
boundary = 1
value = 0
[../]
[]
[Executioner]
type = Steady
l_max_its = 10
nl_max_its = 10
solve_type = JFNK
[]
[Outputs]
file_base = out
exodus = true
[]
(modules/contact/test/tests/verification/patch_tests/ring_1/ring1_template1.i)
[GlobalParams]
order = FIRST
family = LAGRANGE
volumetric_locking_correction = true
displacements = 'disp_x disp_y'
[]
[Mesh]
file = ring1_mesh.e
coord_type = RZ
[]
[Problem]
type = FEProblem
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[]
[AuxVariables]
[./stress_xx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zz]
order = CONSTANT
family = MONOMIAL
[../]
[./penetration]
[../]
[./saved_x]
[../]
[./saved_y]
[../]
[./diag_saved_x]
[../]
[./diag_saved_y]
[../]
[./inc_slip_x]
[../]
[./inc_slip_y]
[../]
[./accum_slip_x]
[../]
[./accum_slip_y]
[../]
[./tang_force_x]
[../]
[./tang_force_y]
[../]
[]
[Kernels]
[./TensorMechanics]
use_displaced_mesh = true
save_in = 'saved_x saved_y'
[../]
[]
[AuxKernels]
[./stress_xx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xx
index_i = 0
index_j = 0
execute_on = timestep_end
[../]
[./stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
execute_on = timestep_end
[../]
[./stress_xy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xy
index_i = 0
index_j = 1
execute_on = timestep_end
[../]
[./stress_zz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zz
index_i = 2
index_j = 2
execute_on = timestep_end
[../]
[./inc_slip_x]
type = PenetrationAux
variable = inc_slip_x
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./inc_slip_y]
type = PenetrationAux
variable = inc_slip_y
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./accum_slip_x]
type = PenetrationAux
variable = accum_slip_x
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./accum_slip_y]
type = PenetrationAux
variable = accum_slip_y
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./penetration]
type = PenetrationAux
variable = penetration
boundary = 3
paired_boundary = 4
[../]
[./tang_force_x]
type = PenetrationAux
variable = tang_force_x
quantity = tangential_force_x
boundary = 3
paired_boundary = 4
[../]
[./tang_force_y]
type = PenetrationAux
variable = tang_force_y
quantity = tangential_force_y
boundary = 3
paired_boundary = 4
[../]
[] # AuxKernels
[Postprocessors]
[./bot_react_x]
type = NodalSum
variable = saved_x
boundary = 1
[../]
[./bot_react_y]
type = NodalSum
variable = saved_y
boundary = 1
[../]
[./top_react_x]
type = NodalSum
variable = saved_x
boundary = 5
[../]
[./top_react_y]
type = NodalSum
variable = saved_y
boundary = 5
[../]
[./ref_resid_x]
type = NodalL2Norm
execute_on = timestep_end
variable = saved_x
[../]
[./ref_resid_y]
type = NodalL2Norm
execute_on = timestep_end
variable = saved_y
[../]
[./sigma_yy]
type = ElementAverageValue
variable = stress_yy
[../]
[./sigma_zz]
type = ElementAverageValue
variable = stress_zz
[../]
[./disp_x2]
type = NodalVariableValue
nodeid = 1
variable = disp_x
[../]
[./disp_x7]
type = NodalVariableValue
nodeid = 6
variable = disp_x
[../]
[./disp_y2]
type = NodalVariableValue
nodeid = 1
variable = disp_y
[../]
[./disp_y7]
type = NodalVariableValue
nodeid = 6
variable = disp_y
[../]
[./_dt]
type = TimestepSize
[../]
[./num_lin_it]
type = NumLinearIterations
[../]
[./num_nonlin_it]
type = NumNonlinearIterations
[../]
[]
[BCs]
[./bot_y]
type = DirichletBC
variable = disp_y
boundary = 1
value = 0.0
[../]
[./top_press]
type = Pressure
variable = disp_y
boundary = 5
factor = 109.89
[../]
[]
[Materials]
[./bot_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '1'
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./bot_strain]
type = ComputeAxisymmetricRZIncrementalStrain
block = '1'
[../]
[./bot_stress]
type = ComputeFiniteStrainElasticStress
block = '1'
[../]
[./top_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '2'
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./top_strain]
type = ComputeAxisymmetricRZIncrementalStrain
block = '2'
[../]
[./top_stress]
type = ComputeFiniteStrainElasticStress
block = '2'
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_factor_mat_solver_type'
petsc_options_value = 'lu superlu_dist'
line_search = 'none'
nl_abs_tol = 1e-10
nl_rel_tol = 1e-9
l_max_its = 100
nl_max_its = 200
dt = 1.0
end_time = 1.0
num_steps = 10
dtmin = 1.0
l_tol = 1e-5
[]
[VectorPostprocessors]
[./x_disp]
type = NodalValueSampler
variable = disp_x
boundary = '1 3 4 5'
sort_by = x
[../]
[./cont_press]
type = NodalValueSampler
variable = contact_pressure
boundary = '3'
sort_by = x
[../]
[]
[Outputs]
print_linear_residuals = true
perf_graph = true
[./exodus]
type = Exodus
elemental_as_nodal = true
[../]
[./console]
type = Console
max_rows = 5
[../]
[./chkfile]
type = CSV
show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x7 disp_y7 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
execute_vector_postprocessors_on = timestep_end
[../]
[./outfile]
type = CSV
delimiter = ' '
execute_vector_postprocessors_on = none
[../]
[]
[Contact]
[./leftright]
secondary = 3
primary = 4
normalize_penalty = true
tangential_tolerance = 1e-3
penalty = 1e+9
[../]
[]
(test/tests/quadrature/order/code-order-bump.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 1
ny = 2
xmin = 0
xmax = 1
ymin = 0
ymax = 2
[]
[left]
type = SubdomainBoundingBoxGenerator
input = gmg
block_id = 1
bottom_left = '0 0 0'
top_right = '1 1 0'
[]
[right]
type = SubdomainBoundingBoxGenerator
input = left
block_id = 2
bottom_left = '0 1 0'
top_right = '1 2 0'
[]
[]
[Materials]
[mat2]
type = QuadratureOrderBumper
order = third
block = '1'
[]
[mat]
type = QuadratureOrderBumper
order = tenth
block = '2'
[]
[]
[Postprocessors]
[block1_qps]
type = NumElemQPs
block = 1
[]
[block2_qps]
type = NumElemQPs
block = 2
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
[]
[Outputs]
execute_on = 'timestep_end'
exodus = false
csv = true
[]
(test/tests/parser/vector_range_checking/all_pass.i)
[Mesh]
type = GeneratedMesh
dim = 3
[]
[Materials]
[./vecrangecheck]
type = VecRangeCheckMaterial
block = 0
rv3 = '1.1 2.2 3.3'
iv3 = '1 2 3'
rvp = '0.1 0.2 0.3 0.4'
uvg = '2 1'
lvg = '2 1'
ivg = '2 1'
rvg = '2.0 1.0'
rvl = '0.0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3'
rve = ''
[../]
[]
[Problem]
type = FEProblem
solve = false
#kernel_check = false
[]
[Executioner]
type = Steady
[]
[Outputs]
execute_on = 'timestep_end'
[]
(test/tests/transfers/multiapp_userobject_transfer/tosub_sub.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 4
ny = 8
xmax = 0.1
ymax = 0.5
coord_type = rz
[]
[Variables]
[./u]
initial_condition = 1
[../]
[]
[AuxVariables]
[./multi_layered_average]
[../]
[./element_multi_layered_average]
order = CONSTANT
family = MONOMIAL
[../]
[]
[Functions]
[./axial_force]
type = ParsedFunction
expression = 1000*y
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[./td]
type = TimeDerivative
variable = u
[../]
[./force]
type = BodyForce
variable = u
function = axial_force
[../]
[]
[BCs]
[./right]
type = DirichletBC
variable = u
boundary = right
value = 1
[../]
[]
[Executioner]
type = Transient
num_steps = 1
dt = 0.001
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
[Problem]
type = FEProblem
[]
(test/tests/tag/mass-matrix.i)
[Mesh]
[square]
type = GeneratedMeshGenerator
nx = 2
ny = 2
dim = 2
[]
[]
[Variables]
[u]
type = MooseVariableFVReal
[]
[]
[AuxVariables]
[mass]
type = MooseVariableFVReal
[]
[]
[FVKernels]
[diff]
type = FVDiffusion
variable = u
coeff = 1
[]
[mass]
type = FVMassMatrix
variable = u
matrix_tags = 'mass'
[]
[]
[AuxKernels]
[TagMatrixAux1]
type = TagMatrixAux
variable = mass
v = u
matrix_tag = mass
[]
[]
[FVBCs]
[left]
type = FVDirichletBC
variable = u
boundary = left
value = 0
[]
[right]
type = FVDirichletBC
variable = u
boundary = right
value = 1
[]
[]
[Problem]
type = FEProblem
extra_tag_matrices = 'mass'
[]
[Executioner]
type = Steady
solve_type = 'NEWTON'
[]
[Outputs]
exodus = true
[]
(test/tests/functions/image_function/flip.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 20
ny = 20
[]
[Variables]
[u]
[]
[]
[Functions]
[image_func]
type = ImageFunction
file_base = stack/test
file_suffix = png
file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
flip_x = true
[]
[]
[ICs]
[u_ic]
type = FunctionIC
function = image_func
variable = u
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 1
dt = 0.1
[]
[Outputs]
exodus = true
[]
(test/tests/quadrature/order/block-order.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 1
ny = 2
xmin = 0
xmax = 1
ymin = 0
ymax = 2
[]
[bottom]
type = SubdomainBoundingBoxGenerator
input = gmg
block_id = 1
bottom_left = '0 0 0'
top_right = '1 1 0'
[]
[top]
type = SubdomainBoundingBoxGenerator
input = bottom
block_id = 2
bottom_left = '0 1 0'
top_right = '1 2 0'
[]
[middle]
type = SideSetsBetweenSubdomainsGenerator
input = top
primary_block = 1
paired_block = 2
new_boundary = middle
[]
[]
[Postprocessors]
[block1_qps]
type = NumElemQPs
block = 1
[]
[block2_qps]
type = NumElemQPs
block = 2
[]
[top_side_qps]
type = NumSideQPs
boundary = top
[]
[bottom_side_qps]
type = NumSideQPs
boundary = bottom
[]
[middle_side_qps]
type = NumSideQPs
boundary = middle
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Steady
[Quadrature]
custom_blocks = '1 2'
custom_orders = 'first second'
[]
[]
[Outputs]
execute_on = 'timestep_end'
exodus = false
csv = true
[]
(test/tests/postprocessors/constant/receiver.i)
[Mesh]
[mesh]
type = GeneratedMeshGenerator
dim = 1
nx = 1
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 3
dt = 1
[]
[Controls]
[func_control]
type = RealFunctionControl
parameter = 'Postprocessors/recv/value'
function = 'val'
execute_on = 'timestep_begin'
[]
[]
[Functions]
[val]
type = ParsedFunction
expression = '1 + 2*t'
[]
[]
[Postprocessors]
[recv]
type = ConstantPostprocessor
[]
[]
[Outputs]
csv = true
[]
(test/tests/functions/image_function/flip_quad.i)
[Mesh]
uniform_refine = 1
[gen]
type = GeneratedMeshGenerator
dim = 2
nx = 20
ny = 20
xmax = 2
ymax = 2
[]
# Define block IDs for the four quadrants in CCW order:
# 1=top_right
# 2=top_left
# 3=bottom_left
# 4=bottom_right
[top_right_modifier]
input = gen
type = SubdomainBoundingBoxGenerator
top_right = '2 2 0'
bottom_left = '1 1 0'
block_id = 1
[]
[top_left_modifier]
input = top_right_modifier
type = SubdomainBoundingBoxGenerator
top_right = '1 2 0'
bottom_left = '0 1 0'
block_id = 2
[]
[bottom_left_modifier]
input = top_left_modifier
type = SubdomainBoundingBoxGenerator
top_right = '1 1 0'
bottom_left = '0 0 0'
block_id = 3
[]
[bottom_right_modifier]
input = bottom_left_modifier
type = SubdomainBoundingBoxGenerator
top_right = '2 1 0'
bottom_left = '1 0 0'
block_id = 4
[]
[]
[Variables]
[u]
family = MONOMIAL
order = CONSTANT
[]
[]
[Functions]
[bottom_left_func]
type = ImageFunction
file_base = stack/test
flip_x = true
file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
file_suffix = png
origin = '0 0 0'
dimensions = '1 1 0'
[]
[top_left_func]
type = ImageFunction
file_base = stack/test
file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
file_suffix = png
origin = '0 1 0'
dimensions = '1 1 0'
flip_x = true
flip_y = true
[]
[top_right_func]
type = ImageFunction
origin = '1 1 0'
file_base = stack/test
file_suffix = png
flip_y = true
file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
dimensions = '1 1 0'
[]
[bottom_right_func]
type = ImageFunction
origin = '1 0 0'
file_base = stack/test
file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
file_suffix = png
dimensions = '1 1 0'
[]
[]
[ICs]
# Defined the same way as the MeshGenerators
[top_right_ic]
function = top_right_func
variable = u
type = FunctionIC
block = 1
[]
[top_left_ic]
function = top_left_func
variable = u
type = FunctionIC
block = 2
[]
[bottom_left_ic]
function = bottom_left_func
variable = u
type = FunctionIC
block = 3
[]
[bottom_right_ic]
function = bottom_right_func
variable = u
type = FunctionIC
block = 4
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 1
dt = 0.1
[]
[Outputs]
exodus = true
[]
(modules/contact/test/tests/verification/patch_tests/cyl_1/cyl1_template1.i)
#
# This input file is a template for both the frictionless and glued test
# variations for the current problem geometry. In order to create an input
# file to run outside the runtest framework, look at the tests file and add the
# appropriate input file lines from the cli_args line.
#
[GlobalParams]
volumetric_locking_correction = true
displacements = 'disp_x disp_y'
[]
[Mesh]
file = cyl1_mesh.e
coord_type = RZ
[]
[Problem]
type = FEProblem
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[]
[AuxVariables]
[./stress_xx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zz]
order = CONSTANT
family = MONOMIAL
[../]
[./penetration]
[../]
[./saved_x]
[../]
[./saved_y]
[../]
[./diag_saved_x]
[../]
[./diag_saved_y]
[../]
[./inc_slip_x]
[../]
[./inc_slip_y]
[../]
[./accum_slip_x]
[../]
[./accum_slip_y]
[../]
[./tang_force_x]
[../]
[./tang_force_y]
[../]
[]
[Kernels]
[./TensorMechanics]
use_displaced_mesh = true
save_in = 'saved_x saved_y'
[../]
[]
[AuxKernels]
[./stress_xx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xx
index_i = 0
index_j = 0
execute_on = timestep_end
[../]
[./stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
execute_on = timestep_end
[../]
[./stress_xy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xy
index_i = 0
index_j = 1
execute_on = timestep_end
[../]
[./stress_zz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zz
index_i = 2
index_j = 2
execute_on = timestep_end
[../]
[./inc_slip_x]
type = PenetrationAux
variable = inc_slip_x
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./inc_slip_y]
type = PenetrationAux
variable = inc_slip_y
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./accum_slip_x]
type = PenetrationAux
variable = accum_slip_x
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./accum_slip_y]
type = PenetrationAux
variable = accum_slip_y
execute_on = timestep_end
boundary = 3
paired_boundary = 4
[../]
[./penetration]
type = PenetrationAux
variable = penetration
boundary = 3
paired_boundary = 4
[../]
[./tang_force_x]
type = PenetrationAux
variable = tang_force_x
quantity = tangential_force_x
boundary = 3
paired_boundary = 4
[../]
[./tang_force_y]
type = PenetrationAux
variable = tang_force_y
quantity = tangential_force_y
boundary = 3
paired_boundary = 4
[../]
[] # AuxKernels
[Postprocessors]
[./bot_react_x]
type = NodalSum
variable = saved_x
boundary = 1
[../]
[./bot_react_y]
type = NodalSum
variable = saved_y
boundary = 1
[../]
[./top_react_x]
type = NodalSum
variable = saved_x
boundary = 5
[../]
[./top_react_y]
type = NodalSum
variable = saved_y
boundary = 5
[../]
[./ref_resid_x]
type = NodalL2Norm
execute_on = timestep_end
variable = saved_x
[../]
[./ref_resid_y]
type = NodalL2Norm
execute_on = timestep_end
variable = saved_y
[../]
[./sigma_yy]
type = ElementAverageValue
variable = stress_yy
[../]
[./sigma_zz]
type = ElementAverageValue
variable = stress_zz
[../]
[./disp_x2]
type = NodalVariableValue
nodeid = 1
variable = disp_x
[../]
[./disp_x7]
type = NodalVariableValue
nodeid = 6
variable = disp_x
[../]
[./disp_y2]
type = NodalVariableValue
nodeid = 1
variable = disp_y
[../]
[./disp_y7]
type = NodalVariableValue
nodeid = 6
variable = disp_y
[../]
[./_dt]
type = TimestepSize
[../]
[./num_lin_it]
type = NumLinearIterations
[../]
[./num_nonlin_it]
type = NumNonlinearIterations
[../]
[]
[BCs]
[./bot_y]
type = DirichletBC
variable = disp_y
boundary = 1
value = 0.0
[../]
[./side_x]
type = DirichletBC
variable = disp_x
boundary = 2
value = 0.0
[../]
[./top_press]
type = Pressure
variable = disp_y
boundary = 5
factor = 109.89
[../]
[]
[Materials]
[./bot_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '1'
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./bot_strain]
type = ComputeAxisymmetricRZIncrementalStrain
block = '1'
[../]
[./bot_stress]
type = ComputeFiniteStrainElasticStress
block = '1'
[../]
[./top_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '2'
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./top_strain]
type = ComputeAxisymmetricRZIncrementalStrain
block = '2'
[../]
[./top_stress]
type = ComputeFiniteStrainElasticStress
block = '2'
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_factor_mat_solver_type'
petsc_options_value = 'lu superlu_dist'
line_search = 'none'
nl_abs_tol = 1e-7
nl_rel_tol = 1e-6
l_max_its = 100
nl_max_its = 1000
dt = 1.0
end_time = 1.0
num_steps = 10
dtmin = 1.0
l_tol = 1e-4
[]
[VectorPostprocessors]
[./x_disp]
type = NodalValueSampler
variable = disp_x
boundary = '1 3 4 5'
sort_by = x
[../]
[./cont_press]
type = NodalValueSampler
variable = contact_pressure
boundary = '3'
sort_by = x
[../]
[]
[Outputs]
print_linear_residuals = true
perf_graph = true
[./exodus]
type = Exodus
elemental_as_nodal = true
[../]
[./console]
type = Console
max_rows = 5
[../]
[./chkfile]
type = CSV
show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x7 disp_y7 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
execute_vector_postprocessors_on = timestep_end
[../]
[./outfile]
type = CSV
delimiter = ' '
execute_vector_postprocessors_on = none
[../]
[]
[Contact]
[./leftright]
secondary = 3
primary = 4
normalize_penalty = true
tangential_tolerance = 1e-3
penalty = 1e+9
[../]
[]
(test/tests/fvkernels/fv_simple_diffusion/dirichlet_rz.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
# x can't start at zero because FV's weak dirichlet BCs need a non-zero area
# on the left so their numerical flux contribution isn't zero'd out -
# causing there to basically be no BC on the left.
xmin = .1
xmax = 1
coord_type = RZ
[]
[Variables]
[u]
[]
[v]
family = MONOMIAL
order = CONSTANT
fv = true
[]
[]
[Kernels]
[diff]
type = Diffusion
variable = u
[]
[]
[FVKernels]
[diff]
type = FVDiffusion
variable = v
coeff = coeff
[]
[]
[FVBCs]
[left]
type = FVDirichletBC
variable = v
boundary = left
value = 7
[]
[right]
type = FVDirichletBC
variable = v
boundary = right
value = 42
[]
[]
[Materials]
[diff]
type = ADGenericFunctorMaterial
prop_names = 'coeff'
prop_values = '1'
[]
[]
[BCs]
[left]
type = DirichletBC
variable = u
boundary = left
value = 7
[]
[right]
type = DirichletBC
variable = u
boundary = right
value = 42
[]
[]
[Problem]
type = FEProblem
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(test/tests/transfers/transfer_on_final/parent.i)
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
[]
[Variables]
[u]
initial_condition = 1234
[]
[v]
initial_condition = 2458
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 4
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[MultiApps]
[sub]
type = TransientMultiApp
input_files = sub.i
execute_on = 'INITIAL TIMESTEP_END'
[]
[]
[Transfers]
[from_sub]
type = MultiAppCopyTransfer
source_variable = u
variable = u
from_multi_app = sub
check_multiapp_execute_on = false
execute_on = 'FINAL'
[]
[to_sub]
type = MultiAppCopyTransfer
source_variable = v
variable = v
to_multi_app = sub
check_multiapp_execute_on = false
execute_on = 'FINAL'
[]
[]
[Outputs]
exodus = true
[final]
type = Exodus
execute_on = 'FINAL'
execute_input_on = 'NONE' # This is needed to avoid problems with creating a file w/o data during --recover testing
[]
[]
(tutorials/darcy_thermo_mech/step03_darcy_material/problems/step3b.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator # Can generate simple lines, rectangles and rectangular prisms
dim = 2 # Dimension of the mesh
nx = 100 # Number of elements in the x direction
ny = 10 # Number of elements in the y direction
xmax = 0.304 # Length of test chamber
ymax = 0.0257 # Test chamber radius
[]
coord_type = RZ # Axisymmetric RZ
rz_coord_axis = X # Which axis the symmetry is around
[]
[Variables/pressure]
# Adds a Linear Lagrange variable by default
[]
[Kernels/darcy_pressure]
type = DarcyPressure
variable = pressure
[]
[BCs]
[inlet]
type = DirichletBC # Simple u=value BC
variable = pressure # Variable to be set
boundary = left # Name of a sideset in the mesh
value = 4000 # (Pa) From Figure 2 from paper. First data point for 1mm spheres.
[]
[outlet]
type = DirichletBC
variable = pressure
boundary = right
value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
[]
[]
[Materials/column]
type = PackedColumn
radius = '1 + 2/3.04*x'
outputs = exodus
[]
[Problem]
type = FEProblem # This is the "normal" type of Finite Element Problem in MOOSE
[]
[Executioner]
type = Steady # Steady state problem
solve_type = NEWTON # Perform a Newton solve, uses AD to compute Jacobian terms
petsc_options_iname = '-pc_type -pc_hypre_type' # PETSc option pairs with values below
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true # Output Exodus format
[]
(test/tests/transfers/multiapp_copy_transfer/block_restriction/sub.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
xmin = 0
xmax = 2
ymin = 0
ymax = 2
nx = 4
ny = 4
subdomain_ids = '1 1 1 1
2 2 1 1
2 2 1 1
1 2 1 1'
[]
[]
[Variables]
[to_main]
family = MONOMIAL
order = CONSTANT
initial_condition = 4
[]
[from_main]
family = MONOMIAL
order = CONSTANT
initial_condition = 3
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Executioner]
type = Transient
num_steps = 2
[]
[Outputs]
exodus = true
[]
(tutorials/tutorial01_app_development/step08_test_harness/problems/pressure_diffusion.i)
[Mesh]
type = GeneratedMesh # Can generate simple lines, rectangles and rectangular prisms
dim = 2 # Dimension of the mesh
nx = 100 # Number of elements in the x direction
ny = 10 # Number of elements in the y direction
xmax = 0.304 # Length of test chamber
ymax = 0.0257 # Test chamber radius
rz_coord_axis = X # Which axis the symmetry is around
coord_type = RZ # Axisymmetric RZ
[]
[Problem]
type = FEProblem # This is the "normal" type of Finite Element Problem in MOOSE
[]
[Variables]
[pressure]
# Adds a Linear Lagrange variable by default
[]
[]
[Kernels]
[diffusion]
type = DarcyPressure # Zero-gravity, divergence-free form of Darcy's law
variable = pressure # Operate on the "pressure" variable from above
permeability = 0.8451e-09 # (m^2) assumed permeability of the porous medium
[]
[]
[BCs]
[inlet]
type = ADDirichletBC # Simple u=value BC
variable = pressure # Variable to be set
boundary = left # Name of a sideset in the mesh
value = 4000 # (Pa) From Figure 2 from paper. First data point for 1mm spheres.
[]
[outlet]
type = ADDirichletBC
variable = pressure
boundary = right
value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
[]
[]
[Executioner]
type = Steady # Steady state problem
solve_type = NEWTON # Perform a Newton solve
# Set PETSc parameters to optimize solver efficiency
petsc_options_iname = '-pc_type -pc_hypre_type' # PETSc option pairs with values below
petsc_options_value = ' hypre boomeramg'
[]
[Outputs]
exodus = true # Output Exodus format
[]
(test/include/problems/SlowProblem.h)
// This file is part of the MOOSE framework
// https://mooseframework.inl.gov
//
// All rights reserved, see COPYRIGHT for full restrictions
// https://github.com/idaholab/moose/blob/master/COPYRIGHT
//
// Licensed under LGPL 2.1, please see LICENSE for details
// https://www.gnu.org/licenses/lgpl-2.1.html
#pragma once
#include "FEProblem.h"
/**
* FEProblemBase derived class for testing out PerfGraph
*/
class SlowProblem : public FEProblem
{
public:
static InputParameters validParams();
SlowProblem(const InputParameters & params);
virtual void solve(unsigned int) override;
protected:
/// Another timed routine
void otherTimedSection() const;
/// Get the time to sleep for
Real getDelay() const;
const std::vector<Real> _seconds_to_sleep;
const bool _nested_print;
const bool _nested_section;
};
(test/include/problems/TagTestProblem.h)
// This file is part of the MOOSE framework
// https://mooseframework.inl.gov
//
// All rights reserved, see COPYRIGHT for full restrictions
// https://github.com/idaholab/moose/blob/master/COPYRIGHT
//
// Licensed under LGPL 2.1, please see LICENSE for details
// https://www.gnu.org/licenses/lgpl-2.1.html
#pragma once
#include "FEProblem.h"
/**
* FEProblem derived class for customization of callbacks. In this instance we only print out
* something in the c-tor and d-tor, so we know the class was build and used properly.
*/
class TagTestProblem : public FEProblem
{
public:
static InputParameters validParams();
TagTestProblem(const InputParameters & params);
virtual void computeResidual(const NumericVector<Number> & soln,
NumericVector<Number> & residual,
unsigned int nl_sys_num = 0) override;
virtual void computeJacobian(const NumericVector<Number> & soln,
SparseMatrix<Number> & jacobian,
unsigned int nl_sys_num = 0) override;
virtual void computeLinearSystemSys(libMesh::LinearImplicitSystem & sys,
libMesh::SparseMatrix<libMesh::Number> & system_matrix,
NumericVector<libMesh::Number> & rhs,
const bool compute_gradients = true) override;
protected:
std::set<std::string> _vtags;
std::set<std::string> _mtags;
};
(modules/level_set/include/base/LevelSetReinitializationProblem.h)
// This file is part of the MOOSE framework
// https://mooseframework.inl.gov
//
// All rights reserved, see COPYRIGHT for full restrictions
// https://github.com/idaholab/moose/blob/master/COPYRIGHT
//
// Licensed under LGPL 2.1, please see LICENSE for details
// https://www.gnu.org/licenses/lgpl-2.1.html
#pragma once
#include "FEProblem.h"
/**
* A Problem object to perform level set equation reinitialization implementation, mainly
* implementing
* a method to reset the state of the simulation so a solve can be performed again.
*/
class LevelSetReinitializationProblem : public FEProblem
{
public:
static InputParameters validParams();
LevelSetReinitializationProblem(const InputParameters & parameters);
/**
* Resets the state of the simulation to allow for it to be re-executed.
*/
void resetTime();
};
(modules/thermal_hydraulics/include/problems/THMProblem.h)
// This file is part of the MOOSE framework
// https://mooseframework.inl.gov
//
// All rights reserved, see COPYRIGHT for full restrictions
// https://github.com/idaholab/moose/blob/master/COPYRIGHT
//
// Licensed under LGPL 2.1, please see LICENSE for details
// https://www.gnu.org/licenses/lgpl-2.1.html
#pragma once
#include "FEProblem.h"
#include "Simulation.h"
/**
* Specialization of FEProblem to run with component subsystem
*/
class THMProblem : public FEProblem, public Simulation
{
public:
THMProblem(const InputParameters & parameters);
virtual void advanceState() override;
virtual void copySolutionsBackwards() override;
/**
* Check if a postprocessor with a given name exists in the simulation
*
* @return true if postprocessor with the given name exists in the simulation, false otherwise
* @param name The name of the postprocessor
*/
virtual bool hasPostprocessor(const std::string & name) const;
public:
static InputParameters validParams();
};
(test/include/problems/FailingProblem.h)
// This file is part of the MOOSE framework
// https://mooseframework.inl.gov
//
// All rights reserved, see COPYRIGHT for full restrictions
// https://github.com/idaholab/moose/blob/master/COPYRIGHT
//
// Licensed under LGPL 2.1, please see LICENSE for details
// https://www.gnu.org/licenses/lgpl-2.1.html
#pragma once
#include "FEProblem.h"
/**
* FEProblemBase derived class that will fail a prescribed timestep for testing
* timestepping algorithms
*/
class FailingProblem : public FEProblem
{
public:
static InputParameters validParams();
FailingProblem(const InputParameters & params);
virtual bool converged(unsigned int nl_sys_num);
protected:
std::vector<unsigned int> _fail_steps;
};
(modules/richards/include/base/RichardsMultiphaseProblem.h)
// This file is part of the MOOSE framework
// https://mooseframework.inl.gov
//
// All rights reserved, see COPYRIGHT for full restrictions
// https://github.com/idaholab/moose/blob/master/COPYRIGHT
//
// Licensed under LGPL 2.1, please see LICENSE for details
// https://www.gnu.org/licenses/lgpl-2.1.html
#pragma once
#include "FEProblem.h"
/**
* Allows a constraint u>=v to be enforced during
* the nonlinear iteration process. This is done
* by modifying u (which is called bounded_var below)
*/
class RichardsMultiphaseProblem : public FEProblem
{
public:
static InputParameters validParams();
RichardsMultiphaseProblem(const InputParameters & params);
virtual ~RichardsMultiphaseProblem();
/**
* extracts the moose variable numbers associated with bounded_var and lower_var
*/
virtual void initialSetup();
/// returns true, indicating that updateSolution should be run
virtual bool shouldUpdateSolution();
/**
* Does the bounding by modifying vec_solution, and then ghosted_solution
* @param vec_solution is the solution that Petsc says we should use.
* @param ghosted_solution is a ghosted version of vec_solution.
* @return true if vec_solution was changed at a node in order to respect the bounds
*/
virtual bool updateSolution(NumericVector<Number> & vec_solution,
NumericVector<Number> & ghosted_solution);
protected:
/// name of the bounded variable (this is the variable that gets altered to respect bounded_var > lower_var)
NonlinearVariableName _bounded_var_name;
/// name of the variable that acts as the lower bound to bounded_var
NonlinearVariableName _lower_var_name;
/// internal moose variable number associated with _bounded_var
unsigned int _bounded_var_num;
/// internal moose variable number associated with _lower_var
unsigned int _lower_var_num;
};
(test/include/problems/FixedPointProblem.h)
// This file is part of the MOOSE framework
// https://mooseframework.inl.gov
//
// All rights reserved, see COPYRIGHT for full restrictions
// https://github.com/idaholab/moose/blob/master/COPYRIGHT
//
// Licensed under LGPL 2.1, please see LICENSE for details
// https://www.gnu.org/licenses/lgpl-2.1.html
#pragma once
#include "FEProblem.h"
/**
* FEProblem derived class for lagging a tagged residual.
*/
class FixedPointProblem : public FEProblem
{
public:
static InputParameters validParams();
FixedPointProblem(const InputParameters & params);
virtual void computeResidual(const NumericVector<Number> & soln,
NumericVector<Number> & residual,
unsigned int nl_sys_num = 0) override;
virtual void computeFullResidual(const NumericVector<Number> & soln,
NumericVector<Number> & residual);
bool taggedVectorForResidual() const { return _tagged_vector_for_partial_residual; }
void copySolution();
protected:
const bool _tagged_vector_for_partial_residual;
const TagName _tag_previous;
const TagID _tag_id;
NumericVector<Number> & _tagged_vector;
};
(modules/navier_stokes/test/include/problems/PrintMatricesNSProblem.h)
// This file is part of the MOOSE framework
// https://mooseframework.inl.gov
//
// All rights reserved, see COPYRIGHT for full restrictions
// https://github.com/idaholab/moose/blob/master/COPYRIGHT
//
// Licensed under LGPL 2.1, please see LICENSE for details
// https://www.gnu.org/licenses/lgpl-2.1.html
#pragma once
#include "FEProblem.h"
#include "libmesh/libmesh_config.h"
#include <petscsnes.h>
class NonlinearSystem;
/**
* A problem that solves and prints matrices used when solving the incompressible Navier-Stokes
* equations
*/
class PrintMatricesNSProblem : public FEProblem
{
public:
static InputParameters validParams();
PrintMatricesNSProblem(const InputParameters & parameters);
protected:
virtual void onTimestepEnd() override;
private:
/// The tag name of the pressure mass matrix
const TagName & _pressure_mass_matrix;
/// The tag name of the velocity mass matrix
const TagName & _velocity_mass_matrix;
/// The tag name of the jump matrix
const std::vector<TagName> & _augmented_lagrange_matrices;
};
(test/include/problems/MooseTestProblem.h)
// This file is part of the MOOSE framework
// https://mooseframework.inl.gov
//
// All rights reserved, see COPYRIGHT for full restrictions
// https://github.com/idaholab/moose/blob/master/COPYRIGHT
//
// Licensed under LGPL 2.1, please see LICENSE for details
// https://www.gnu.org/licenses/lgpl-2.1.html
#pragma once
#include "FEProblem.h"
class AuxiliarySystem;
/**
* FEProblemBase derived class for customization of callbacks. In this instance we only print out
* something in the c-tor and d-tor, so we know the class was build and used properly.
*/
class MooseTestProblem : public FEProblem
{
public:
static InputParameters validParams();
MooseTestProblem(const InputParameters & params);
virtual ~MooseTestProblem();
private:
std::shared_ptr<AuxiliarySystem> _test_aux;
};
(test/include/problems/CheckActiveMatPropProblem.h)
// This file is part of the MOOSE framework
// https://mooseframework.inl.gov
//
// All rights reserved, see COPYRIGHT for full restrictions
// https://github.com/idaholab/moose/blob/master/COPYRIGHT
//
// Licensed under LGPL 2.1, please see LICENSE for details
// https://www.gnu.org/licenses/lgpl-2.1.html
#pragma once
#include "FEProblem.h"
class AuxiliarySystem;
class CheckActiveMatPropProblem : public FEProblem
{
public:
static InputParameters validParams();
CheckActiveMatPropProblem(const InputParameters & params);
/**
* Get the material properties required by the current computing thread.
*
* @param tid The thread id
*/
std::unordered_set<unsigned int> getActiveMaterialProperties(const THREAD_ID tid) const;
private:
std::shared_ptr<AuxiliarySystem> _test_aux;
};
(modules/navier_stokes/include/problems/NavierStokesProblem.h)
// This file is part of the MOOSE framework
// https://mooseframework.inl.gov
//
// All rights reserved, see COPYRIGHT for full restrictions
// https://github.com/idaholab/moose/blob/master/COPYRIGHT
//
// Licensed under LGPL 2.1, please see LICENSE for details
// https://www.gnu.org/licenses/lgpl-2.1.html
#pragma once
#include "FEProblem.h"
#include "libmesh/libmesh_config.h"
#include <petscsnes.h>
class NonlinearSystem;
/**
* A problem that handles Schur complement preconditioning of the incompressible Navier-Stokes
* equations
*/
class NavierStokesProblem : public FEProblem
{
public:
static InputParameters validParams();
NavierStokesProblem(const InputParameters & parameters);
#if PETSC_RELEASE_GREATER_EQUALS(3, 20, 0)
/**
* @returns the mass matrix tag ID
*/
TagID massMatrixTagID() const { return getMatrixTagID(_mass_matrix); }
/**
* @returns the poisson operator matrix tag ID
*/
TagID LMatrixTagID() const { return getMatrixTagID(_L_matrix); }
/**
* Clear the field split index sets
*/
void clearIndexSets() { _index_sets.clear(); }
/*
* Given a \p KSP \p node and where we are in the field split tree, given by \p tree_position,
* return the next \p KSP object in the tree on the way to the Schur complement \p KSP object.
* Each invocation of this method moves through one level of our \p _index_sets data member. This
* method will call itself recursively until it reaches the Schur complement \p KSP
*/
KSP findSchurKSP(KSP node, unsigned int tree_position);
/**
* Setup the Least Squares Commutator (LSC) preconditioner given the Schur complement \p KSP
* object
*/
void setupLSCMatrices(KSP schur_ksp);
/**
* Will destroy any matrices we allocated
*/
virtual ~NavierStokesProblem();
virtual void initialSetup() override;
protected:
/**
* Reinitialize PETSc output for proper linear/nonlinear iteration display
*/
virtual void initPetscOutputAndSomeSolverSettings() override;
private:
/// Whether to commute operators in the style of Olshanskii. If this is true, then the user must
/// provide both (pressure) mass matrices and a Poisson operator for the velocity
const bool _commute_lsc;
/// The tag name of the mass matrix
const TagName & _mass_matrix;
/// The tag name of the Poisson operator
const TagName & _L_matrix;
/// Whether the user attached a mass matrix
const bool _have_mass_matrix;
/// Whether the user attached a Poisson operator matrix
const bool _have_L_matrix;
/// Whether to directly use the pressure mass matrix to form the Schur complement
/// preconditioner. This is only appropriate for Stokes flow in which the pressure mass matrix is
/// spectrally equivalent to the Schur complement
const bool _pressure_mass_matrix_as_pre;
/// The length of this vector should correspond to the number of split nesting levels there are in
/// the field split. Then the integers should indicate the path one shold take in the nesting tree
/// to get to the location of the Schur complement field split
const std::vector<unsigned int> & _schur_fs_index;
/// The mass matrix used for scaling
Mat _Q_scale = nullptr;
/// The Poisson operator
Mat _L = nullptr;
/// This will end up being the same length as \p _schur_fs_index. Let's give an example of what
/// this data member means. If the user sets "schur_fs_index = '1'", then this means the Schur
/// complement field split is nested within another field split, and the Schur complement field
/// split is at the 1st index of the top split (some other set of degrees of freedom take up the
/// 0th index of the top split). So in this example \p _index_sets will be of length 1, and the
/// Index Set (IS) held by this container will hold all the Schur complement field split degrees
/// of freedom (e.g. all the system degrees of freedom minus the degrees of freedom held in the
/// 0th index of the top split). An example of this example is if we split out all the velocity
/// Dirichlet degrees of freedom into the 0th index of the top split, and then our Schur
/// complement at index 1 of the top split handles all non-Dirichlet velocity degrees of freedom
/// and all pressure degrees of freedom
std::vector<IS> _index_sets;
#endif
};
(modules/level_set/include/base/LevelSetProblem.h)
// This file is part of the MOOSE framework
// https://mooseframework.inl.gov
//
// All rights reserved, see COPYRIGHT for full restrictions
// https://github.com/idaholab/moose/blob/master/COPYRIGHT
//
// Licensed under LGPL 2.1, please see LICENSE for details
// https://www.gnu.org/licenses/lgpl-2.1.html
#pragma once
#include "FEProblem.h"
/**
* Problem that defines a custom call to MultiAppTransfers to allow for
* adaptivity to be transferred from master to sub-application.
*/
class LevelSetProblem : public FEProblem
{
public:
static InputParameters validParams();
LevelSetProblem(const InputParameters & parameters);
virtual bool adaptMesh() override;
virtual void computeMarkers() override;
};
(framework/include/problems/ReferenceResidualProblem.h)
// This file is part of the MOOSE framework
// https://mooseframework.inl.gov
//
// All rights reserved, see COPYRIGHT for full restrictions
// https://github.com/idaholab/moose/blob/master/COPYRIGHT
//
// Licensed under LGPL 2.1, please see LICENSE for details
// https://www.gnu.org/licenses/lgpl-2.1.html
#pragma once
#include "FEProblem.h"
#include "ReferenceResidualInterface.h"
/**
* Problem that checks for convergence relative to a user-supplied reference quantity
* rather than the initial residual.
*/
class ReferenceResidualProblem : public FEProblem, public ReferenceResidualInterface
{
public:
static InputParameters validParams();
ReferenceResidualProblem(const InputParameters & params);
virtual void addDefaultNonlinearConvergence(const InputParameters & params) override;
virtual bool onlyAllowDefaultNonlinearConvergence() const override { return true; }
};