- block_idSubdomain id to set for inside of the combinatorial
C++ Type:unsigned short
Controllable:No
Description:Subdomain id to set for inside of the combinatorial
- combinatorial_geometryFunction expression encoding a combinatorial geometry
C++ Type:std::string
Controllable:No
Description:Function expression encoding a combinatorial geometry
- inputThe mesh we want to modify
C++ Type:MeshGeneratorName
Controllable:No
Description:The mesh we want to modify
ParsedSubdomainMeshGenerator
Uses a parsed expression (combinatorial_geometry) to determine if an element (via its centroid) is inside the region defined by the expression and assigns a new block ID.
Example
The desired example mesh is a 1-by-1 2D square which contains Block 1 (a centered 0.8-by-0.8 square) and Block 2 (a 0.4-by-0.4 square located in the bottom left quarter of Block 1). The remaining edge of the square can be Block 0.
The combinatorial expression that defines Block 1 is below.
x > 0.1 & x < 0.9 & y > 0.1 & y < 0.9
The expression
x < 0.5 & y < 0.5
can partially define Block 2, but the region outside Block 1 also needs to be excluded. The input file syntax needed to generate this example is shown below.
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 10
ny = 10
xmax = 1
ymax = 1
uniform_refine = 2
[]
[subdomains]
type = ParsedSubdomainMeshGenerator
input = gmg
combinatorial_geometry = 'x > 0.1 & x < 0.9 & y > 0.1 & y < 0.9'
block_id = 1
[]
[subdomains2]
type = ParsedSubdomainMeshGenerator
combinatorial_geometry = 'x < 0.5 & y < 0.5'
excluded_subdomains = '0'
block_id = 2
input = subdomains
[]
[]
The final mesh output is:
Input Parameters
- block_nameSubdomain name to set for inside of the combinatorial
C++ Type:SubdomainName
Controllable:No
Description:Subdomain name to set for inside of the combinatorial
- constant_expressionsVector of values for the constants in constant_names (can be an FParser expression)
C++ Type:std::vector<std::string>
Controllable:No
Description:Vector of values for the constants in constant_names (can be an FParser expression)
- constant_namesVector of constants used in the parsed function
C++ Type:std::vector<std::string>
Controllable:No
Description:Vector of constants used in the parsed function
- excluded_subdomainsA set of subdomain names that will not changed even if they are inside/outside the combinatorial geometry
C++ Type:std::vector<SubdomainName>
Controllable:No
Description:A set of subdomain names that will not changed even if they are inside/outside the combinatorial geometry
- extra_element_id_namesExtra element integers used in the parsed expression
C++ Type:std::vector<ExtraElementIDName>
Controllable:No
Description:Extra element integers used in the parsed expression
Optional Parameters
- control_tagsAdds user-defined labels for accessing object parameters via control logic.
C++ Type:std::vector<std::string>
Controllable:No
Description:Adds user-defined labels for accessing object parameters via control logic.
- disable_fpoptimizerFalseDisable the function parser algebraic optimizer
Default:False
C++ Type:bool
Controllable:No
Description:Disable the function parser algebraic optimizer
- enableTrueSet the enabled status of the MooseObject.
Default:True
C++ Type:bool
Controllable:No
Description:Set the enabled status of the MooseObject.
- enable_ad_cacheTrueEnable caching of function derivatives for faster startup time
Default:True
C++ Type:bool
Controllable:No
Description:Enable caching of function derivatives for faster startup time
- enable_auto_optimizeTrueEnable automatic immediate optimization of derivatives
Default:True
C++ Type:bool
Controllable:No
Description:Enable automatic immediate optimization of derivatives
- enable_jitTrueEnable just-in-time compilation of function expressions for faster evaluation
Default:True
C++ Type:bool
Controllable:No
Description:Enable just-in-time compilation of function expressions for faster evaluation
- evalerror_behaviornanWhat to do if evaluation error occurs. Options are to pass a nan, pass a nan with a warning, throw a error, or throw an exception
Default:nan
C++ Type:MooseEnum
Options:nan, nan_warning, error, exception
Controllable:No
Description:What to do if evaluation error occurs. Options are to pass a nan, pass a nan with a warning, throw a error, or throw an exception
- save_with_nameKeep the mesh from this mesh generator in memory with the name specified
C++ Type:std::string
Controllable:No
Description:Keep the mesh from this mesh generator in memory with the name specified
Advanced Parameters
- nemesisFalseWhether or not to output the mesh file in the nemesisformat (only if output = true)
Default:False
C++ Type:bool
Controllable:No
Description:Whether or not to output the mesh file in the nemesisformat (only if output = true)
- outputFalseWhether or not to output the mesh file after generating the mesh
Default:False
C++ Type:bool
Controllable:No
Description:Whether or not to output the mesh file after generating the mesh
- show_infoFalseWhether or not to show mesh info after generating the mesh (bounding box, element types, sidesets, nodesets, subdomains, etc)
Default:False
C++ Type:bool
Controllable:No
Description:Whether or not to show mesh info after generating the mesh (bounding box, element types, sidesets, nodesets, subdomains, etc)
Debugging Parameters
Input Files
- (modules/ray_tracing/test/tests/raybcs/reflect_ray_bc/reflect_ray_bc_nonplanar.i)
- (test/tests/meshgenerators/show_info/show_info.i)
- (modules/navier_stokes/test/tests/finite_volume/pins/channel-flow/heated/2d-rc-heated-effective-action.i)
- (modules/navier_stokes/test/tests/finite_volume/ins/pump/pump_and_counterpump_loop.i)
- (test/tests/outputs/debug/show_execution_linear_fv_flux.i)
- (test/tests/outputs/debug/show_execution_fv_flux_objects.i)
- (modules/combined/examples/optimization/helmholtz_multimat_nostrip.i)
- (test/tests/transfers/general_field/shape_evaluation/boundary/main.i)
- (test/tests/transfers/general_field/shape_evaluation/subdomain/sub.i)
- (test/tests/transfers/general_field/user_object/boundary/sub.i)
- (test/tests/transfers/general_field/nearest_node/subdomain/main.i)
- (test/tests/outputs/debug/show_execution_linear_fv_elemental.i)
- (test/tests/vectorpostprocessors/material_vector_postprocessor/all_elements_block_restricted.i)
- (test/tests/meshgenerators/parsed_generate_sideset/parsed_generate_sideset_boundary_limited.i)
- (test/tests/transfers/general_field/nearest_node/subdomain/sub.i)
- (modules/ray_tracing/test/tests/userobjects/ray_tracing_study/multiple_subdomains/multiple_subdomains.i)
- (modules/ray_tracing/test/tests/raykernels/material_integral_ray_kernel/material_integral_ray_kernel.i)
- (modules/navier_stokes/test/tests/finite_volume/ins/action/errors/2d-rc-error-action-no-scalar.i)
- (test/tests/transfers/general_field/nearest_node/boundary/main.i)
- (modules/navier_stokes/test/tests/finite_volume/ins/pump/pump_loop.i)
- (modules/combined/examples/geochem-porous_flow/geotes_weber_tensleep/porous_flow.i)
- (test/tests/meshgenerators/elements_to_tetrahedrons_convertor/simple_convert.i)
- (test/tests/transfers/general_field/shape_evaluation/subdomain/main.i)
- (modules/xfem/test/tests/nucleation_uo/nucleate_edge_crack_2d.i)
- (test/tests/controls/libtorch_nn_control/read_control.i)
- (test/tests/postprocessors/element_integral/functors/element_integral_test.i)
- (test/tests/transfers/general_field/shape_evaluation/boundary/sub.i)
- (test/tests/transfers/general_field/user_object/boundary/main.i)
- (test/tests/meshgenerators/cut_mesh_by_plane_generator/simple_cut.i)
- (modules/navier_stokes/test/tests/finite_volume/ins/pump/pump_loop_negative_rotation.i)
- (modules/navier_stokes/test/tests/finite_volume/pins/channel-flow/heated/2d-rc-heated-effective.i)
- (modules/combined/examples/geochem-porous_flow/geotes_weber_tensleep/aquifer_geochemistry.i)
- (modules/stochastic_tools/test/tests/transfers/sampler_transfer_vector/sub.i)
- (test/tests/transfers/general_field/nearest_node/boundary/sub.i)
- (test/tests/meshgenerators/parsed_generate_sideset/parsed_generate_sideset.i)
- (test/tests/transfers/general_field/user_object/subdomain/main.i)
- (modules/navier_stokes/test/tests/finite_volume/ins/pump/pump_as_volume_force_loop_force_corrected.i)
- (test/tests/fvkernels/mms/harmonic_interpolation/diffusion.i)
- (modules/stochastic_tools/examples/surrogates/combined/trans_diff_2d/trans_diff_sub.i)
- (modules/navier_stokes/test/tests/finite_volume/ins/pump/pump_as_volume_force_loop_pressure_corrected.i)
- (test/tests/meshgenerators/check_duplicate_subdomain_names/check_duplicate_subdomain_names.i)
- (modules/navier_stokes/test/tests/finite_volume/ins/action/restart-block-restriction/ns-restart-steady.i)
- (modules/navier_stokes/test/tests/finite_volume/ins/action/errors/2d-rc-error-action.i)
- (test/tests/meshgenerators/nodesets_from_sidesets_generator/from_sides.i)
- (modules/porous_flow/examples/ates/ates.i)
- (modules/combined/examples/optimization/helmholtz_multimat_strip.i)
- (test/tests/positions/element_centroid_positions.i)
- (test/tests/outputs/debug/show_execution_kernels_bcs.i)
- (test/tests/transfers/general_field/nearest_node/nearest_position/sub_holes.i)
- (test/tests/meshgenerators/parsed_subdomain_mesh_generator/parsed_subdomain_mg.i)
- (test/tests/meshgenerators/parsed_subdomain_mesh_generator/parsed_subdomain_eeid.i)
- (test/tests/transfers/general_field/user_object/subdomain/sub.i)
- (modules/solid_mechanics/test/tests/shell/static/pinched_cylinder_symm.i)
- (test/tests/meshgenerators/flip_sideset_generator/flux_flip_3D.i)
(test/tests/meshgenerators/parsed_subdomain_mesh_generator/parsed_subdomain_mg.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 10
ny = 10
xmax = 1
ymax = 1
uniform_refine = 2
[]
[subdomains]
type = ParsedSubdomainMeshGenerator
input = gmg
combinatorial_geometry = 'x > 0.1 & x < 0.9 & y > 0.1 & y < 0.9'
block_id = 1
[]
[subdomains2]
type = ParsedSubdomainMeshGenerator
combinatorial_geometry = 'x < 0.5 & y < 0.5'
excluded_subdomains = '0'
block_id = 2
input = subdomains
[]
[]
[Outputs]
exodus = true
[]
(modules/ray_tracing/test/tests/raybcs/reflect_ray_bc/reflect_ray_bc_nonplanar.i)
[Mesh]
[file]
type = FileMeshGenerator
file = nonplanar.e
[]
[subdomains]
type = ParsedSubdomainMeshGenerator
input = file
combinatorial_geometry = 'x > 0.5'
block_id = 1
[]
[internal_sideset]
type = SideSetsBetweenSubdomainsGenerator
input = subdomains
primary_block = 0
paired_block = 1
new_boundary = internal
[]
[]
[UserObjects/study]
type = RepeatableRayStudy
start_points = '0 0 0'
directions = '1 1 1'
names = 'ray'
warn_non_planar = false
use_internal_sidesets = true
execute_on = initial
tolerate_failure = true
[]
[RayBCs]
[kill]
type = KillRayBC
boundary = 'top right bottom left front back'
[]
[reflect_internal]
type = ReflectRayBC
boundary = internal
[]
[]
[RayKernels/null]
type = NullRayKernel
[]
[Executioner]
type = Steady
[]
[Problem]
solve = false
[]
(test/tests/meshgenerators/show_info/show_info.i)
[Mesh]
[gmg_quad]
type = GeneratedMeshGenerator
dim = 2
nx = 4
ny = 4
show_info = true
[]
[gmg_quad_block1]
type = ParsedSubdomainMeshGenerator
input = gmg_quad
combinatorial_geometry = 'x > 0.5'
block_name = 'dummy'
block_id = 1
show_info = true
[]
[gmg_tri]
type = GeneratedMeshGenerator
dim = 2
nx = 4
ny = 4
elem_type = TRI3
show_info = true
[]
[gmg_tri_block2]
type = ParsedSubdomainMeshGenerator
input = gmg_tri
combinatorial_geometry = 'y > 0.5'
block_id = 2
block_name = 'dummy2'
show_info = true
[]
[gmg_tri_block3]
type = ParsedSubdomainMeshGenerator
input = gmg_tri_block2
combinatorial_geometry = 'y < 0.5'
block_id = 3
block_name = 'dummy3'
show_info = true
[]
[pmg]
type = PatternedMeshGenerator
inputs = 'gmg_quad_block1 gmg_tri_block3'
pattern = '0 1 0;
1 1 0'
show_info = true
[]
[interior]
type = ParsedGenerateSideset
input = pmg
combinatorial_geometry = 'x > 0.99 & x < 1.01'
normal = '1 0 0'
new_sideset_name = interior
show_info = true
[]
[]
(modules/navier_stokes/test/tests/finite_volume/pins/channel-flow/heated/2d-rc-heated-effective-action.i)
mu = 1
rho = 1
cp = 1
u_inlet = 1
T_inlet = 200
[Mesh]
[gen]
type = GeneratedMeshGenerator
dim = 2
xmin = 0
xmax = 10
ymin = 0
ymax = 1
nx = 100
ny = 20
[]
[left]
type = ParsedSubdomainMeshGenerator
input = gen
combinatorial_geometry = 'x > 3 & x < 6'
block_id = 1
[]
[right]
type = ParsedSubdomainMeshGenerator
input = left
combinatorial_geometry = 'x < 3'
block_id = 2
[]
[more-right]
type = ParsedSubdomainMeshGenerator
input = right
combinatorial_geometry = 'x > 6'
block_id = 3
[]
[]
[AuxVariables]
[porosity]
type = MooseVariableFVReal
initial_condition = 0.5
[]
[T_solid]
family = 'MONOMIAL'
order = 'CONSTANT'
fv = true
initial_condition = 100
[]
[]
[Modules]
[NavierStokesFV]
compressibility = 'incompressible'
porous_medium_treatment = true
add_energy_equation = true
density = ${rho}
dynamic_viscosity = ${mu}
thermal_conductivity_blocks = '1 2; 3'
thermal_conductivity = 'kappa kappa'
specific_heat = ${cp}
porosity = 'porosity'
initial_velocity = '${u_inlet} 1e-6 0'
initial_pressure = 0.0
initial_temperature = 0.0
inlet_boundaries = 'left'
momentum_inlet_types = 'fixed-velocity'
momentum_inlet_function = '${u_inlet} 0'
energy_inlet_types = 'heatflux'
energy_inlet_function = '${fparse u_inlet * rho * cp * T_inlet}'
wall_boundaries = 'top bottom'
momentum_wall_types = 'noslip symmetry'
energy_wall_types = 'heatflux heatflux'
energy_wall_function = '0 0'
outlet_boundaries = 'right'
momentum_outlet_types = 'fixed-pressure'
pressure_function = '0.1'
ambient_convection_alpha = 'h_cv'
ambient_temperature = 'T_solid'
mass_advection_interpolation = 'average'
momentum_advection_interpolation = 'average'
energy_advection_interpolation = 'average'
[]
[]
[FunctorMaterials]
[kappa]
type = ADGenericVectorFunctorMaterial
prop_names = 'kappa'
prop_values = '1e-3 1e-2 1e-1'
[]
[constants]
type = ADGenericFunctorMaterial
prop_names = 'h_cv'
prop_values = '1'
[]
[]
[Executioner]
type = Steady
solve_type = 'NEWTON'
petsc_options_iname = '-pc_type -pc_factor_shift_type'
petsc_options_value = 'lu NONZERO'
nl_rel_tol = 1e-12
[]
# Some basic Postprocessors to examine the solution
[Postprocessors]
[inlet-p]
type = SideAverageValue
variable = pressure
boundary = 'left'
[]
[outlet-u]
type = SideAverageValue
variable = superficial_vel_x
boundary = 'right'
[]
[outlet-temp]
type = SideAverageValue
variable = T_fluid
boundary = 'right'
[]
[solid-temp]
type = ElementAverageValue
variable = T_solid
[]
[]
[Outputs]
exodus = true
csv = false
[]
(modules/navier_stokes/test/tests/finite_volume/ins/pump/pump_and_counterpump_loop.i)
mu = 1.0
rho = 1.0
[Mesh]
[gen]
type = CartesianMeshGenerator
dim = 2
dx = '0.1 0.8 0.1'
dy = '0.1 0.8 0.1'
ix = '5 20 5'
iy = '5 20 5'
subdomain_id = '1 1 1
1 2 1
1 1 1'
[]
[delete_internal_part]
type = BlockDeletionGenerator
input = gen
block = '2'
new_boundary = 'wall-internal'
[]
[lump_bdries_to_wall]
type = RenameBoundaryGenerator
input = delete_internal_part
old_boundary = 'bottom right top left'
new_boundary = 'wall-external wall-external wall-external wall-external'
[]
[pump_1_domain]
type = ParsedSubdomainMeshGenerator
input = lump_bdries_to_wall
combinatorial_geometry = 'x > 0.3 & x < 0.4 & y > 0.5'
block_id = '3'
[]
[pump_2_domain]
type = ParsedSubdomainMeshGenerator
input = pump_1_domain
combinatorial_geometry = 'x > 0.5 & y > 0.3 & y < 0.4'
block_id = '4'
[]
[rename_blocks]
type = RenameBlockGenerator
input = pump_2_domain
old_block = '1 3 4'
new_block = 'pipe pump_1 pump_2'
[]
[side_pump]
type = ParsedGenerateSideset
input = rename_blocks
included_subdomains = 'pump_1'
included_neighbors = 'pipe'
new_sideset_name = 'pump_side'
normal = '1 0 0'
combinatorial_geometry = 'x > 0.35'
[]
[]
[GlobalParams]
velocity_interp_method = 'rc'
advected_interp_method = 'upwind'
rhie_chow_user_object = 'rc'
[]
[Problem]
material_coverage_check = False
[]
[UserObjects]
[rc]
type = INSFVRhieChowInterpolator
u = vel_x
v = vel_y
pressure = pressure
correct_volumetric_force = true
volumetric_force_functors = 'pump_volume_force_1 pump_volume_force_2'
[]
[]
[Variables]
[vel_x]
type = INSFVVelocityVariable
initial_condition = 1
[]
[vel_y]
type = INSFVVelocityVariable
initial_condition = 1
[]
[pressure]
type = INSFVPressureVariable
[]
[lambda]
family = SCALAR
order = FIRST
[]
[]
[AuxVariables]
[U]
order = CONSTANT
family = MONOMIAL
fv = true
[]
[]
[AuxKernels]
[mag]
type = VectorMagnitudeAux
variable = U
x = vel_x
y = vel_y
[]
[]
[FVKernels]
[mass]
type = INSFVMassAdvection
variable = pressure
rho = ${rho}
[]
[mean_zero_pressure]
type = FVIntegralValueConstraint
variable = pressure
lambda = lambda
phi0 = 0.0
[]
[u_advection]
type = INSFVMomentumAdvection
variable = vel_x
rho = ${rho}
momentum_component = 'x'
[]
[u_viscosity]
type = INSFVMomentumDiffusion
variable = vel_x
mu = ${mu}
momentum_component = 'x'
[]
[u_pressure]
type = INSFVMomentumPressure
variable = vel_x
momentum_component = 'x'
pressure = pressure
[]
[u_pump_1]
type = INSFVPump
variable = vel_x
momentum_component = 'x'
pump_volume_force = 'pump_volume_force_1'
block = 'pump_1'
[]
[v_advection]
type = INSFVMomentumAdvection
variable = vel_y
rho = ${rho}
momentum_component = 'y'
[]
[v_viscosity]
type = INSFVMomentumDiffusion
variable = vel_y
mu = ${mu}
momentum_component = 'y'
[]
[v_pressure]
type = INSFVMomentumPressure
variable = vel_y
momentum_component = 'y'
pressure = pressure
[]
[u_pump_2]
type = INSFVPump
variable = vel_y
momentum_component = 'y'
pump_volume_force = 'pump_volume_force_2'
block = 'pump_2'
[]
[]
[FVBCs]
[walls-u]
type = INSFVNoSlipWallBC
boundary = 'wall-internal wall-external'
variable = vel_x
function = '0'
[]
[walls-v]
type = INSFVNoSlipWallBC
boundary = 'wall-internal wall-external'
variable = vel_y
function = '0'
[]
[]
[Functions]
[pump_head]
type = PiecewiseLinear
x = '0.0 10.0'
y = '1000.0 0.0'
[]
[]
[FunctorMaterials]
[pump_mat_1]
type = NSFVPumpFunctorMaterial
rho = ${rho}
speed = 'U'
pressure_head_function = 'pump_head'
rotation_speed = 120
rotation_speed_rated = 100
area_rated = 0.1
volume_rated = 0.01
flow_rate_rated = 1.0
flow_rate = 'flow_rate'
block = 'pump_1'
pump_force_name = 'pump_volume_force_1'
[]
[pump_mat_2]
type = NSFVPumpFunctorMaterial
rho = ${rho}
speed = 'U'
pressure_head_function = 'pump_head'
rotation_speed = 50
rotation_speed_rated = 100
area_rated = 0.1
volume_rated = 0.01
flow_rate_rated = 1.0
flow_rate = 'flow_rate'
block = 'pump_2'
pump_force_name = 'pump_volume_force_2'
[]
[]
[Postprocessors]
[flow_rate]
type = Receiver
default = 1.0
[]
[flow_rate_to_pipe]
type = VolumetricFlowRate
advected_quantity = ${rho}
boundary = 'pump_side'
vel_x = 'vel_x'
vel_y = 'vel_y'
[]
[maximum_speed]
type = ADElementExtremeFunctorValue
functor = vel_x
value_type = max
[]
[]
[Executioner]
type = Steady
solve_type = 'NEWTON'
petsc_options_iname = '-pc_type -pc_factor_shift_type'
petsc_options_value = 'lu NONZERO'
nl_rel_tol = 1e-12
[]
[Outputs]
exodus = false
[out]
type = CSV
execute_on = FINAL
show = 'flow_rate_to_pipe maximum_speed'
[]
[]
(test/tests/outputs/debug/show_execution_linear_fv_flux.i)
[Mesh]
[gen_mesh]
type = GeneratedMeshGenerator
dim = 1
xmin = 0
xmax = 10
nx = 50
[]
[left]
type = ParsedSubdomainMeshGenerator
input = 'gen_mesh'
combinatorial_geometry = 'x < 0.5'
block_id = '1'
[]
[]
[Problem]
linear_sys_names = 'u_sys'
[]
[Variables]
[u]
type = MooseLinearVariableFVReal
solver_sys = 'u_sys'
[]
[]
[LinearFVKernels]
[diffusion_1]
type = LinearFVDiffusion
variable = u
diffusion_coeff = 1.5
block = 0
[]
[diffusion_2]
type = LinearFVDiffusion
variable = u
diffusion_coeff = 2.5
block = 1
[]
[source_1]
type = LinearFVSource
variable = u
source_density = 3.5
block = 0
[]
[source_2]
type = LinearFVSource
variable = u
source_density = 4.5
block = 1
[]
[]
[LinearFVBCs]
[left_bc]
type = LinearFVAdvectionDiffusionFunctorDirichletBC
variable = u
boundary = 'left right'
functor = 0
[]
[]
[Executioner]
type = LinearPicardSteady
linear_systems_to_solve = u_sys
[]
[Debug]
show_execution_order = 'NONLINEAR'
[]
(test/tests/outputs/debug/show_execution_fv_flux_objects.i)
[Mesh]
[gen_mesh]
type = GeneratedMeshGenerator
dim = 1
xmin = 0
xmax = 10
nx = 50
[]
[left]
type = ParsedSubdomainMeshGenerator
input = 'gen_mesh'
combinatorial_geometry = 'x < 0.5'
block_id = '2'
[]
[middle_boundary]
type = SideSetsBetweenSubdomainsGenerator
input = 'left'
primary_block = '0'
paired_block = '2'
new_boundary = 'middle'
[]
[]
[Variables]
[v]
family = MONOMIAL
order = CONSTANT
fv = true
block = 2
[]
[u]
type = MooseVariableFVReal
[]
[]
[ICs]
[v_ic]
type = FunctionIC
variable = v
function = 'if (x > 2 & x < 3, 0.5, 0)'
[]
[]
[FVKernels]
# Twice the kernel makes it not the Burgers equation, but shows the ordering
[2_burger]
type = FVBurgers1D
variable = v
[]
[1_burgers]
type = FVBurgers1D
variable = v
[]
[time]
type = FVTimeKernel
variable = v
[]
[time_u]
type = FVTimeKernel
variable = u
[]
[]
[FVBCs]
[fv_burgers_right]
type = FVBurgersOutflowBC
variable = v
boundary = 'middle'
[]
[fv_burgers_left]
type = FVBurgersOutflowBC
variable = v
boundary = 'left'
[]
[]
[FVInterfaceKernels]
[diff_ik]
type = FVOnlyAddDiffusionToOneSideOfInterface
variable1 = 'v'
variable2 = 'u'
boundary = 'middle'
coeff2 = '1'
subdomain1 = '2'
subdomain2 = '0'
[]
[]
[Executioner]
type = Transient
petsc_options_iname = '-pc_type'
petsc_options_value = 'lu'
petsc_options = '-snes_converged_reason'
nl_abs_tol = 1e-7
nl_rel_tol = 1e-8
num_steps = 1
dt = 0.05
nl_forced_its = 1
line_search = none
[]
[Debug]
show_execution_order = 'LINEAR'
[]
(modules/combined/examples/optimization/helmholtz_multimat_nostrip.i)
vol_frac = 0.35
power = 1.1
Emin = 1.0e-6
Ess = 0.475 # ss
Et = 1.0 # w
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Mesh]
# final_generator = 'MoveRight'
[Bottom]
type = GeneratedMeshGenerator
dim = 2
nx = 320
ny = 30
xmin = 0
xmax = 150
ymin = 0
ymax = 15
[]
[RenameBottom]
type = RenameBoundaryGenerator
input = Bottom
old_boundary = 'top bottom right left'
new_boundary = 'top_bottom bottom_bottom right_bottom left_bottom'
[]
[Top]
type = GeneratedMeshGenerator
dim = 2
nx = 320
ny = 30
xmin = 0
xmax = 150
ymin = 0
ymax = 15
[]
[MoveTop]
type = TransformGenerator
input = Top
transform = TRANSLATE
vector_value = '0 15 0'
[]
[RenameTop]
type = RenameBoundaryGenerator
input = MoveTop
old_boundary = 'top bottom right left'
new_boundary = 'top_top bottom_top right_top left_top'
[]
[bottom_gen]
type = ParsedSubdomainMeshGenerator
input = RenameBottom
combinatorial_geometry = 'y <= 15'
block_id = 1
[]
[top_gen]
type = ParsedSubdomainMeshGenerator
input = RenameTop
combinatorial_geometry = 'y > 15'
block_id = 3
[]
[stitch]
type = StitchedMeshGenerator
inputs = 'bottom_gen top_gen'
stitch_boundaries_pairs = 'top_bottom bottom_top'
[]
[left_load]
type = ExtraNodesetGenerator
input = stitch
new_boundary = left_load
coord = '37.5 30 0'
[]
[right_load]
type = ExtraNodesetGenerator
input = left_load
new_boundary = right_load
coord = '112.5 30 0'
[]
[left_support]
type = ExtraNodesetGenerator
input = right_load
new_boundary = left_support
coord = '0 0 0'
[]
[right_support]
type = ExtraNodesetGenerator
input = left_support
new_boundary = right_support
coord = '150 0 0'
[]
[]
[Variables]
[disp_x]
[]
[disp_y]
[]
[Dc]
initial_condition = -1.0
[]
[]
[AuxVariables]
[Cc]
family = MONOMIAL
order = CONSTANT
initial_condition = -1.0
[]
[mat_den]
family = MONOMIAL
order = CONSTANT
initial_condition = ${vol_frac}
[]
[sensitivity]
family = MONOMIAL
order = FIRST
initial_condition = -1.0
[AuxKernel]
type = MaterialRealAux
variable = sensitivity
property = sensitivity
execute_on = LINEAR
[]
[]
[mat_den_nodal]
family = L2_LAGRANGE
order = FIRST
initial_condition = ${vol_frac}
[AuxKernel]
type = SelfAux
execute_on = TIMESTEP_END
variable = mat_den_nodal
v = mat_den
[]
[]
[Dc_elem]
family = MONOMIAL
order = CONSTANT
initial_condition = -1.0
[AuxKernel]
type = SelfAux
variable = Dc_elem
v = Dc
execute_on = 'TIMESTEP_END'
[]
[]
[]
[Kernels]
[diffusion]
type = FunctionDiffusion
variable = Dc
function = 4.0
[]
[potential]
type = Reaction
variable = Dc
[]
[source]
type = CoupledForce
variable = Dc
v = sensitivity
[]
[]
[Modules/TensorMechanics/Master]
[all]
strain = SMALL
add_variables = true
incremental = false
[]
[]
[BCs]
[no_y]
type = DirichletBC
variable = disp_y
boundary = left_support
value = 0.0
[]
[no_x]
type = DirichletBC
variable = disp_x
boundary = left_support
value = 0.0
[]
[no_y_right]
type = DirichletBC
variable = disp_y
boundary = right_support
value = 0.0
[]
[boundary_penalty]
type = ADRobinBC
variable = Dc
boundary = 'bottom_bottom right_bottom left_bottom top_top right_top left_top'
coefficient = 10
[]
[]
[NodalKernels]
[left_down]
type = NodalGravity
variable = disp_y
boundary = left_load
gravity_value = -1e-3
mass = 1
[]
[right_down]
type = NodalGravity
variable = disp_y
boundary = right_load
gravity_value = -1e-3
mass = 1
[]
[]
[Materials]
[elasticity_tensor_one]
type = ComputeVariableIsotropicElasticityTensor
youngs_modulus = E_phys_one
poissons_ratio = poissons_ratio
args = 'mat_den'
block = '1'
[]
[elasticity_tensor_three]
type = ComputeVariableIsotropicElasticityTensor
youngs_modulus = E_phys_three
poissons_ratio = poissons_ratio
args = 'mat_den'
block = '3'
[]
# One: Tungsten
[E_phys_one]
type = DerivativeParsedMaterial
# Emin + (density^penal) * (E0 - Emin)
expression = '${Emin} + (mat_den ^ ${power}) * (${Et}-${Emin})'
coupled_variables = 'mat_den'
property_name = E_phys_one
block = '1'
outputs = 'exodus'
[]
# Three: SS316
[E_phys_three]
type = DerivativeParsedMaterial
# Emin + (density^penal) * (E0 - Emin)
expression = '${Emin} + (mat_den ^ ${power}) * (${Ess}-${Emin})'
coupled_variables = 'mat_den'
property_name = E_phys_three
block = '3'
outputs = 'exodus'
[]
[poissons_ratio]
type = GenericConstantMaterial
prop_names = poissons_ratio
prop_values = 0.3
[]
[stress]
type = ComputeLinearElasticStress
[]
[dc_one]
type = ComplianceSensitivity
design_density = mat_den
youngs_modulus = E_phys_one
block = '1'
[]
[dc_three]
type = ComplianceSensitivity
design_density = mat_den
youngs_modulus = E_phys_three
block = '3'
[]
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
[UserObjects]
[update_one]
type = DensityUpdate
density_sensitivity = Dc_elem
design_density = mat_den
volume_fraction = ${vol_frac}
execute_on = TIMESTEP_BEGIN
block = '1'
[]
[update_three]
type = DensityUpdate
density_sensitivity = Dc_elem
design_density = mat_den
volume_fraction = ${vol_frac}
execute_on = TIMESTEP_BEGIN
block = '3'
[]
[]
[Executioner]
type = Transient
solve_type = NEWTON
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = 'lu superlu_dist'
nl_abs_tol = 1e-10
dt = 1.0
num_steps = 90
[]
[Outputs]
exodus = true
[out]
type = CSV
execute_on = 'TIMESTEP_END'
[]
print_linear_residuals = false
[]
[Postprocessors]
[mesh_volume]
type = VolumePostprocessor
execute_on = 'initial timestep_end'
[]
[total_vol]
type = ElementIntegralVariablePostprocessor
variable = mat_den
execute_on = 'INITIAL TIMESTEP_END'
[]
[vol_frac]
type = ParsedPostprocessor
expression = 'total_vol / mesh_volume'
pp_names = 'total_vol mesh_volume'
[]
[sensitivity]
type = ElementIntegralMaterialProperty
mat_prop = sensitivity
block = '1 3'
[]
[objective_one]
type = ElementIntegralMaterialProperty
mat_prop = strain_energy_density
execute_on = 'INITIAL TIMESTEP_END'
block = '1'
[]
[objective_three]
type = ElementIntegralMaterialProperty
mat_prop = strain_energy_density
execute_on = 'INITIAL TIMESTEP_END'
block = '3'
[]
[]
(test/tests/transfers/general_field/shape_evaluation/boundary/main.i)
# Base input for testing transfers. It has the following complexities:
# - more than one subapp
# - transfers both from and to the subapps
# - both nodal and elemental variables
# - subapp meshes are not aligned with the main app
# Tests derived from this input may add complexities through command line arguments
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 3
nx = 5
ny = 5
nz = 5
[]
[add_block]
type = ParsedSubdomainMeshGenerator
input = gmg
combinatorial_geometry = 'x < 0.5 & y < 0.5'
block_id = 1
[]
[add_internal_sideset]
type = SideSetsBetweenSubdomainsGenerator
input = add_block
primary_block = 0
paired_block = 1
new_boundary = internal
[]
[]
[AuxVariables]
[from_sub]
initial_condition = -1
[]
[from_sub_elem]
order = CONSTANT
family = MONOMIAL
initial_condition = -1
[]
[to_sub]
[InitialCondition]
type = FunctionIC
function = '1 + 2*x*x + 3*y*y*y'
[]
[]
[to_sub_elem]
order = CONSTANT
family = MONOMIAL
[InitialCondition]
type = FunctionIC
function = '2 + 2*x*x + 3*y*y*y'
[]
[]
[]
[Executioner]
type = Transient
num_steps = 1
[]
[Problem]
solve = false
verbose_multiapps = true
[]
[Outputs]
[out]
type = Exodus
hide = 'to_sub to_sub_elem'
overwrite = true
[]
[]
[MultiApps]
[sub]
# 1 on corner, one in the center and one close to a corner
# The subapp mesh is a 0.3-sized cube, no overlap
positions = '0.2222 0 0 0.61111 0.311111 0.31111 0.76666 0.111111 0.81111'
type = TransientMultiApp
app_type = MooseTestApp
input_files = sub.i
execute_on = timestep_end
# Facilitates debugging
output_in_position = true
[]
[]
[Transfers]
# Boundary restrictions are added in the tests specification
[to_sub]
type = MultiAppGeneralFieldShapeEvaluationTransfer
to_multi_app = sub
source_variable = to_sub
variable = from_main
extrapolation_constant = -1
[]
[to_sub_elem]
type = MultiAppGeneralFieldShapeEvaluationTransfer
to_multi_app = sub
source_variable = to_sub_elem
variable = from_main_elem
extrapolation_constant = -1
[]
[from_sub]
type = MultiAppGeneralFieldShapeEvaluationTransfer
from_multi_app = sub
source_variable = to_main
variable = from_sub
extrapolation_constant = -1
[]
[from_sub_elem]
type = MultiAppGeneralFieldShapeEvaluationTransfer
from_multi_app = sub
source_variable = to_main_elem
variable = from_sub_elem
extrapolation_constant = -1
[]
[]
(test/tests/transfers/general_field/shape_evaluation/subdomain/sub.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 5
ny = 5
xmax = 0.2
ymax = 0.2
[]
[add_block]
type = ParsedSubdomainMeshGenerator
input = gmg
combinatorial_geometry = 'x > 0.05 & y < 0.1'
block_id = 1
[]
[]
[AuxVariables]
[from_main]
initial_condition = -1
[]
[from_main_elem]
order = CONSTANT
family = MONOMIAL
initial_condition = -1
[]
[to_main]
[InitialCondition]
type = FunctionIC
function = '3 + 2*x*x + 3*y*y*y'
[]
[]
[to_main_elem]
order = CONSTANT
family = MONOMIAL
[InitialCondition]
type = FunctionIC
function = '4 + 2*x*x + 3*y*y*y'
[]
[]
[]
[Executioner]
type = Transient
num_steps = 1
[]
[Problem]
solve = false
[]
[Outputs]
exodus = true
hide = 'to_main to_main_elem'
execute_on = 'TIMESTEP_END'
[]
(test/tests/transfers/general_field/user_object/boundary/sub.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 3
nx = 5
ny = 5
nz = 5
xmax = 0.3
ymax = 0.3
zmax = 0.3
[]
[add_block]
type = ParsedSubdomainMeshGenerator
input = gmg
combinatorial_geometry = 'x > 0.22 & y < 0.23'
block_id = 1
[]
[add_internal_sideset]
type = SideSetsBetweenSubdomainsGenerator
input = add_block
primary_block = 0
paired_block = 1
new_boundary = internal
[]
[]
[AuxVariables]
[from_main]
initial_condition = -1
[]
[from_main_elem]
order = CONSTANT
family = MONOMIAL
initial_condition = -1
[]
[to_main]
[InitialCondition]
type = FunctionIC
function = '3 + 2*x*x + 3*y*y*y'
[]
[]
[to_main_elem]
order = CONSTANT
family = MONOMIAL
[InitialCondition]
type = FunctionIC
function = '4 + 2*x*x + 3*y*y*y'
[]
[]
[]
[UserObjects]
[to_main]
type = LayeredAverage
direction = x
num_layers = 10
variable = to_main
[]
[to_main_elem]
type = LayeredAverage
direction = x
num_layers = 10
variable = to_main_elem
[]
[]
[Executioner]
type = Transient
num_steps = 1
[]
[Problem]
solve = false
[]
[Outputs]
[out]
type = Exodus
hide = 'to_main to_main_elem'
overwrite = true
[]
[]
(test/tests/transfers/general_field/nearest_node/subdomain/main.i)
# Base input for testing transfers. It has the following complexities:
# - more than one subapp
# - transfers both from and to the subapps
# - both nodal and elemental variables
# - subapp meshes are not aligned with the main app
# Tests derived from this input may add complexities through command line arguments
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 5
ny = 5
[]
[add_block]
type = ParsedSubdomainMeshGenerator
input = gmg
combinatorial_geometry = 'x < 0.6 & y < 0.5'
block_id = 1
[]
[]
[AuxVariables]
[from_sub]
initial_condition = -1
[]
[from_sub_elem]
order = CONSTANT
family = MONOMIAL
initial_condition = -1
[]
[to_sub]
[InitialCondition]
type = FunctionIC
function = '1 + 2*x*x + 3*y*y*y'
[]
[]
[to_sub_elem]
order = CONSTANT
family = MONOMIAL
[InitialCondition]
type = FunctionIC
function = '2 + 2*x*x + 3*y*y*y'
[]
[]
[]
[Executioner]
type = Transient
num_steps = 1
[]
[Problem]
solve = false
[]
[Outputs]
[out]
type = Exodus
hide = 'to_sub to_sub_elem'
[]
execute_on = 'TIMESTEP_END'
[]
[MultiApps]
[sub]
# 1 on corner, one in the center and one close to a corner
# Offsets are added to make sure there are no equidistant nodes / transfer indetermination
positions = '0.00001 0 0 0.4022222 0.281111 0 0.7232323 0.12323 0'
type = TransientMultiApp
app_type = MooseTestApp
input_files = sub.i
execute_on = timestep_end
output_in_position = true
[]
[]
[Transfers]
[to_sub]
type = MultiAppGeneralFieldNearestLocationTransfer
to_multi_app = sub
source_variable = to_sub
variable = from_main
from_blocks = 1
to_blocks = 1
[]
[to_sub_elem]
type = MultiAppGeneralFieldNearestLocationTransfer
to_multi_app = sub
source_variable = to_sub_elem
variable = from_main_elem
from_blocks = 1
to_blocks = 1
[]
[from_sub]
type = MultiAppGeneralFieldNearestLocationTransfer
from_multi_app = sub
source_variable = to_main
variable = from_sub
from_blocks = 1
to_blocks = 1
[]
[from_sub_elem]
type = MultiAppGeneralFieldNearestLocationTransfer
from_multi_app = sub
source_variable = to_main_elem
variable = from_sub_elem
from_blocks = 1
to_blocks = 1
[]
[]
(test/tests/outputs/debug/show_execution_linear_fv_elemental.i)
[Mesh]
[gen_mesh]
type = GeneratedMeshGenerator
dim = 1
xmin = 0
xmax = 10
nx = 50
[]
[left]
type = ParsedSubdomainMeshGenerator
input = 'gen_mesh'
combinatorial_geometry = 'x < 0.5'
block_id = '1'
[]
[]
[Problem]
linear_sys_names = 'u_sys'
[]
[Variables]
[u]
type = MooseLinearVariableFVReal
solver_sys = 'u_sys'
[]
[]
[LinearFVKernels]
[reaction_1]
type = LinearFVReaction
variable = u
coeff = 1.5
block = 0
[]
[reaction_2]
type = LinearFVReaction
variable = u
coeff = 2.5
block = 1
[]
[source_1]
type = LinearFVSource
variable = u
source_density = 3.5
block = 0
[]
[source_2]
type = LinearFVSource
variable = u
source_density = 4.5
block = 1
[]
[]
[Executioner]
type = LinearPicardSteady
linear_systems_to_solve = u_sys
[]
[Debug]
show_execution_order = 'NONLINEAR'
[]
(test/tests/vectorpostprocessors/material_vector_postprocessor/all_elements_block_restricted.i)
# test that all scalar material properties are properly recorded for all elements.
[Mesh]
allow_renumbering = false
[gen]
type = GeneratedMeshGenerator
dim = 2
nx = 2
ny = 3
[]
[./subdomains]
type = ParsedSubdomainMeshGenerator
input = gen
combinatorial_geometry = 'x < 0.5'
block_id = 1
[]
[]
[Variables]
[u]
[]
[]
[Kernels]
[diff]
type = Diffusion
variable = u
[]
[]
[BCs]
[left]
type = DirichletBC
variable = u
boundary = left
value = 0
[]
[right]
type = DirichletBC
variable = u
boundary = right
value = 1
[]
[]
[Materials]
[mat]
type = GenericFunctionMaterial
prop_names = 'prop1 prop2 prop3'
prop_values = '1 2 t'
[]
[]
[VectorPostprocessors]
[vpp]
type = MaterialVectorPostprocessor
material = 'mat'
block = '1'
[]
[]
[Executioner]
type = Transient
num_steps = 2
nl_abs_tol = 1e-12
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
execute_on = 'initial timestep_end'
csv = true
[]
(test/tests/meshgenerators/parsed_generate_sideset/parsed_generate_sideset_boundary_limited.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 3
nx = 3
ny = 3
nz = 4
xmax = 3
ymax = 3
zmax = 3
[]
[subdomains]
type = ParsedSubdomainMeshGenerator
input = gmg
combinatorial_geometry = 'x < 1 & y > 1 & y < 2'
block_id = 1
[]
[sideset]
type = ParsedGenerateSideset
input = subdomains
combinatorial_geometry = 'z < 1.6'
included_subdomains = '1'
normal = '1 0 0'
new_sideset_name = interior
[]
[sideset_further_limited]
type = ParsedGenerateSideset
input = sideset
combinatorial_geometry = 'z > 0.6'
included_boundaries = 'interior'
new_sideset_name = interior_smaller
[]
[]
[Outputs]
exodus = true
[]
(test/tests/transfers/general_field/nearest_node/subdomain/sub.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 5
ny = 5
xmax = 0.2
ymax = 0.2
[]
[add_block]
type = ParsedSubdomainMeshGenerator
input = gmg
combinatorial_geometry = 'x > 0.05 & y < 0.1'
block_id = 1
[]
[]
[AuxVariables]
[from_main]
initial_condition = -1
[]
[from_main_elem]
order = CONSTANT
family = MONOMIAL
initial_condition = -1
[]
[to_main]
[InitialCondition]
type = FunctionIC
function = '3 + 2*x*x + 3*y*y*y'
[]
[]
[to_main_elem]
order = CONSTANT
family = MONOMIAL
[InitialCondition]
type = FunctionIC
function = '4 + 2*x*x + 3*y*y*y'
[]
[]
[]
[Executioner]
type = Transient
num_steps = 1
[]
[Problem]
solve = false
[]
[Outputs]
exodus = true
hide = 'to_main to_main_elem'
execute_on = 'TIMESTEP_END'
[]
(modules/ray_tracing/test/tests/userobjects/ray_tracing_study/multiple_subdomains/multiple_subdomains.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 3
ny = 5
xmax = 3
ymax = 5
[]
[subdomain1]
type = ParsedSubdomainMeshGenerator
input = gmg
combinatorial_geometry = 'x > 1 & x < 2'
block_id = 1
[]
[subdomain2]
type = ParsedSubdomainMeshGenerator
input = subdomain1
combinatorial_geometry = 'x > 2'
block_id = 2
[]
[]
[AuxVariables/aux]
order = CONSTANT
family = MONOMIAL
[]
[RayKernels]
[aux0] # add the value of 1 to aux for all Rays that pass through block 0
type = FunctionAuxRayKernelTest
variable = aux
function = 1
block = 0
[]
[aux1] # add the value of 2 to aux for all Rays that pass through block 1
type = FunctionAuxRayKernelTest
variable = aux
function = 2
block = 1
[]
[aux2] # add the value of 3 to aux for all Rays that pass through block 2
type = FunctionAuxRayKernelTest
variable = aux
function = 3
block = 2
[]
[]
[UserObjects/lots]
type = LotsOfRaysRayStudy
execute_on = initial
vertex_to_vertex = false
centroid_to_vertex = false
centroid_to_centroid = true
[]
[Executioner]
type = Steady
[]
[Problem]
solve = false
[]
[Outputs]
exodus = true
[]
(modules/ray_tracing/test/tests/raykernels/material_integral_ray_kernel/material_integral_ray_kernel.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 5
ny = 5
xmax = 5
ymax = 5
[]
[modify_subdomain]
type = ParsedSubdomainMeshGenerator
input = gmg
block_id = 1
combinatorial_geometry = 'x > 2'
[]
[]
[Materials]
[generic_mat_block0]
type = GenericFunctionMaterial
block = 0
prop_names = 'mat'
prop_values = 'parsed_block0'
[]
[generic_mat_block1]
type = GenericFunctionMaterial
block = 1
prop_names = 'mat'
prop_values = 'parsed_block1'
[]
[]
[Functions]
[parsed_block0]
type = ParsedFunction
expression = 'x + 2 * y'
[]
[parsed_block1] # continuous at the interface
type = ParsedFunction
expression = '2 * x + 2 * y - 2'
[]
[]
[UserObjects]
[study]
type = RepeatableRayStudy
names = 'diag
top_across
bottom_across
partial'
start_points = '0 0 0
0 5 0
0 0 0
0.5 0.5 0'
end_points = '5 5 0
5 5 0
5 0 0
4.5 0.5 0'
[]
[]
[RayKernels]
[material_integral]
type = MaterialIntegralRayKernel
study = study
mat_prop = mat
[]
[]
[Postprocessors]
[diag_value]
type = RayIntegralValue
ray_kernel = material_integral
ray = diag
[]
[top_across_value]
type = RayIntegralValue
ray_kernel = material_integral
ray = top_across
[]
[bottom_across_value]
type = RayIntegralValue
ray_kernel = material_integral
ray = bottom_across
[]
[partial_value]
type = RayIntegralValue
ray_kernel = material_integral
ray = partial
[]
[]
[Problem]
solve = false
[]
[Executioner]
type = Steady
[]
[Outputs]
exodus = false
csv = true
[]
(modules/navier_stokes/test/tests/finite_volume/ins/action/errors/2d-rc-error-action-no-scalar.i)
mu=1
rho=1
k=1e-3
cp=1
[Mesh]
[gen]
type = GeneratedMeshGenerator
dim = 2
xmin = 0
xmax = 5
ymin = -1
ymax = 1
nx = 10
ny = 4
[]
[right]
type = ParsedSubdomainMeshGenerator
input = gen
combinatorial_geometry = 'x > 2.5'
block_id = 1
[]
[left]
type = ParsedSubdomainMeshGenerator
input = right
combinatorial_geometry = 'x < 2.5'
block_id = 2
[]
[]
[Modules]
[NavierStokesFV]
compressibility = 'incompressible'
add_energy_equation = true
density = ${rho}
dynamic_viscosity = ${mu}
thermal_conductivity = ${k}
specific_heat = ${cp}
inlet_boundaries = 'left'
momentum_inlet_types = 'fixed-velocity'
momentum_inlet_function = '1 0'
energy_inlet_types = 'fixed-temperature'
energy_inlet_function = '1'
wall_boundaries = 'top bottom'
momentum_wall_types = 'noslip noslip'
energy_wall_types = 'heatflux heatflux'
energy_wall_function = '0 0'
outlet_boundaries = 'right'
momentum_outlet_types = 'fixed-pressure'
pressure_function = '0'
[]
[]
[FunctorMaterials]
[kappa]
type = ADGenericVectorFunctorMaterial
prop_names = 'kappa'
prop_values = '1 1 1'
[]
[]
[Executioner]
type = Steady
solve_type = 'NEWTON'
petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_pc_type -sub_pc_factor_shift_type'
petsc_options_value = 'asm 100 lu NONZERO'
line_search = 'none'
nl_rel_tol = 1e-12
[]
(test/tests/transfers/general_field/nearest_node/boundary/main.i)
# Base input for testing transfers. It has the following complexities:
# - more than one subapp
# - transfers both from and to the subapps
# - both nodal and elemental variables
# - subapp meshes are not aligned with the main app
# Tests derived from this input may add complexities through command line arguments
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 3
nx = 5
ny = 5
nz = 5
[]
[add_block]
type = ParsedSubdomainMeshGenerator
input = gmg
combinatorial_geometry = 'x < 0.5 & y < 0.5'
block_id = 1
[]
[add_internal_sideset]
type = SideSetsBetweenSubdomainsGenerator
input = add_block
primary_block = 0
paired_block = 1
new_boundary = internal
[]
[]
[AuxVariables]
[from_sub]
initial_condition = -1
[]
[from_sub_elem]
order = CONSTANT
family = MONOMIAL
initial_condition = -1
[]
[to_sub]
[InitialCondition]
type = FunctionIC
function = '1 + 2*x*x + 3*y*y*y'
[]
[]
[to_sub_elem]
order = CONSTANT
family = MONOMIAL
[InitialCondition]
type = FunctionIC
function = '2 + 2*x*x + 3*y*y*y'
[]
[]
[]
[Executioner]
type = Transient
num_steps = 1
[]
[Problem]
solve = false
verbose_multiapps = true
[]
[Outputs]
[out]
type = Exodus
hide = 'to_sub to_sub_elem'
overwrite = true
[]
[]
[MultiApps]
[sub]
# 1 on corner, one in the center and one close to a corner
# The subapp mesh is a 0.3-sized cube, no overlap
positions = '0.2222 0.00002 0.0001 0.61111 0.311111 0.31211 0.76666 0.111114 0.81111'
type = TransientMultiApp
app_type = MooseTestApp
input_files = sub.i
execute_on = timestep_end
# Facilitates debugging
output_in_position = true
[]
[]
[Transfers]
# Boundary restrictions are added in the tests specification
[to_sub]
type = MultiAppGeneralFieldNearestLocationTransfer
to_multi_app = sub
source_variable = to_sub
variable = from_main
[]
[to_sub_elem]
type = MultiAppGeneralFieldNearestLocationTransfer
to_multi_app = sub
source_variable = to_sub_elem
variable = from_main_elem
[]
[from_sub]
type = MultiAppGeneralFieldNearestLocationTransfer
from_multi_app = sub
source_variable = to_main
variable = from_sub
[]
[from_sub_elem]
type = MultiAppGeneralFieldNearestLocationTransfer
from_multi_app = sub
source_variable = to_main_elem
variable = from_sub_elem
[]
[]
(modules/navier_stokes/test/tests/finite_volume/ins/pump/pump_loop.i)
mu = 1.0
rho = 1.0
[Mesh]
[gen]
type = CartesianMeshGenerator
dim = 2
dx = '0.1 0.8 0.1'
dy = '0.1 0.8 0.1'
ix = '5 20 5'
iy = '5 20 5'
subdomain_id = '1 1 1
1 2 1
1 1 1'
[]
[delete_internal_part]
type = BlockDeletionGenerator
input = gen
block = '2'
new_boundary = 'wall-internal'
[]
[lump_bdries_to_wall]
type = RenameBoundaryGenerator
input = delete_internal_part
old_boundary = 'bottom right top left'
new_boundary = 'wall-external wall-external wall-external wall-external'
[]
[pump_domain]
type = ParsedSubdomainMeshGenerator
input = lump_bdries_to_wall
combinatorial_geometry = 'x > 0.3 & x < 0.4 & y > 0.5'
block_id = '3'
[]
[rename_blocks]
type = RenameBlockGenerator
input = pump_domain
old_block = '1 3'
new_block = 'pipe pump'
[]
[side_pump]
type = ParsedGenerateSideset
input = rename_blocks
included_subdomains = 'pump'
included_neighbors = 'pipe'
new_sideset_name = 'pump_side'
normal = '1 0 0'
combinatorial_geometry = 'x > 0.35'
[]
[]
[GlobalParams]
velocity_interp_method = 'rc'
advected_interp_method = 'upwind'
rhie_chow_user_object = 'rc'
[]
[Problem]
material_coverage_check = False
[]
[UserObjects]
[rc]
type = INSFVRhieChowInterpolator
u = vel_x
v = vel_y
pressure = pressure
correct_volumetric_force = true
volumetric_force_functors = 'pump_volume_force'
volume_force_correction_method = 'pressure-consistent'
[]
[]
[Variables]
[vel_x]
type = INSFVVelocityVariable
initial_condition = 1
[]
[vel_y]
type = INSFVVelocityVariable
initial_condition = 1
[]
[pressure]
type = INSFVPressureVariable
[]
[lambda]
family = SCALAR
order = FIRST
[]
[]
[AuxVariables]
[U]
order = CONSTANT
family = MONOMIAL
fv = true
[]
[]
[AuxKernels]
[mag]
type = VectorMagnitudeAux
variable = U
x = vel_x
y = vel_y
[]
[]
[FVKernels]
[mass]
type = INSFVMassAdvection
variable = pressure
rho = ${rho}
[]
[mean_zero_pressure]
type = FVIntegralValueConstraint
variable = pressure
lambda = lambda
phi0 = 0.0
[]
[u_advection]
type = INSFVMomentumAdvection
variable = vel_x
rho = ${rho}
momentum_component = 'x'
[]
[u_viscosity]
type = INSFVMomentumDiffusion
variable = vel_x
mu = ${mu}
momentum_component = 'x'
[]
[u_pressure]
type = INSFVMomentumPressure
variable = vel_x
momentum_component = 'x'
pressure = pressure
[]
[u_pump]
type = INSFVPump
variable = vel_x
momentum_component = 'x'
pump_volume_force = 'pump_volume_force'
block = 'pump'
[]
[v_advection]
type = INSFVMomentumAdvection
variable = vel_y
rho = ${rho}
momentum_component = 'y'
[]
[v_viscosity]
type = INSFVMomentumDiffusion
variable = vel_y
mu = ${mu}
momentum_component = 'y'
[]
[v_pressure]
type = INSFVMomentumPressure
variable = vel_y
momentum_component = 'y'
pressure = pressure
[]
[]
[FVBCs]
[walls-u]
type = INSFVNoSlipWallBC
boundary = 'wall-internal wall-external'
variable = vel_x
function = '0'
[]
[walls-v]
type = INSFVNoSlipWallBC
boundary = 'wall-internal wall-external'
variable = vel_y
function = '0'
[]
[]
[Functions]
[pump_head]
type = PiecewiseLinear
x = '0.0 10.0'
y = '1000.0 0.0'
[]
[]
[FunctorMaterials]
[pump_mat]
type = NSFVPumpFunctorMaterial
rho = ${rho}
speed = 'U'
pressure_head_function = 'pump_head'
rotation_speed = 120
rotation_speed_rated = 100
area_rated = 0.1
volume_rated = 0.01
flow_rate_rated = 1.0
flow_rate = 'flow_rate'
block = 'pump'
[]
[]
[Postprocessors]
[flow_rate]
type = Receiver
default = 1.0
[]
[flow_rate_to_pipe]
type = VolumetricFlowRate
advected_quantity = ${rho}
boundary = 'pump_side'
vel_x = 'vel_x'
vel_y = 'vel_y'
[]
[maximum_speed]
type = ADElementExtremeFunctorValue
functor = vel_x
value_type = max
[]
[]
[Executioner]
type = Steady
solve_type = 'NEWTON'
petsc_options_iname = '-pc_type -pc_factor_shift_type'
petsc_options_value = 'lu NONZERO'
nl_rel_tol = 1e-12
[]
[Outputs]
exodus = false
[out]
type = CSV
execute_on = FINAL
show = 'flow_rate_to_pipe maximum_speed'
[]
[]
(modules/combined/examples/geochem-porous_flow/geotes_weber_tensleep/porous_flow.i)
#########################################
# #
# File written by create_input_files.py #
# #
#########################################
# PorousFlow simulation of injection and production in a simplified GeoTES aquifer
# Much of this file is standard porous-flow stuff. The unusual aspects are:
# - transfer of the rates of changes of each species (kg.s) to the aquifer_geochemistry.i simulation. This is achieved by saving these changes from the PorousFlowMassTimeDerivative residuals
# - transfer of the temperature field to the aquifer_geochemistry.i simulation
# Interesting behaviour can be simulated by this file without its 'parent' simulation, exchanger.i. exchanger.i provides mass-fractions injected via the injection_rate_massfrac_* variables, but since these are more-or-less constant throughout the duration of the exchanger.i simulation, the initial_conditions specified below may be used. Similar, exchanger.i provides injection_temperature, but that is also constant.
injection_rate = -0.02 # kg/s/m, negative because injection as a source
production_rate = 0.02 # kg/s/m, this is about the maximum that can be sustained by the aquifer, with its fairly low permeability, without porepressure becoming negative
[Mesh]
[gen]
type = GeneratedMeshGenerator
dim = 3
xmin = -75
xmax = 75
ymin = 0
ymax = 40
zmin = -25
zmax = 25
nx = 15
ny = 4
nz = 5
[]
[aquifer]
type = ParsedSubdomainMeshGenerator
input = gen
block_id = 1
block_name = aquifer
combinatorial_geometry = 'z >= -5 & z <= 5'
[]
[injection_nodes]
input = aquifer
type = ExtraNodesetGenerator
new_boundary = injection_nodes
coord = '-25 0 -5; -25 0 5'
[]
[production_nodes]
input = injection_nodes
type = ExtraNodesetGenerator
new_boundary = production_nodes
coord = '25 0 -5; 25 0 5'
[]
[]
[GlobalParams]
PorousFlowDictator = dictator
gravity = '0 0 -10'
[]
[BCs]
[injection_temperature]
type = MatchedValueBC
variable = temperature
v = injection_temperature
boundary = injection_nodes
[]
[]
[FluidProperties]
[the_simple_fluid]
type = SimpleFluidProperties
thermal_expansion = 0
bulk_modulus = 2E9
viscosity = 1E-3
density0 = 1000
cv = 4000.0
cp = 4000.0
[]
[]
[PorousFlowFullySaturated]
coupling_type = ThermoHydro
porepressure = porepressure
temperature = temperature
mass_fraction_vars = 'f_H f_Cl f_SO4 f_HCO3 f_SiO2aq f_Al f_Ca f_Mg f_Fe f_K f_Na f_Sr f_F f_BOH f_Br f_Ba f_Li f_NO3 f_O2aq '
save_component_rate_in = 'rate_H rate_Cl rate_SO4 rate_HCO3 rate_SiO2aq rate_Al rate_Ca rate_Mg rate_Fe rate_K rate_Na rate_Sr rate_F rate_BOH rate_Br rate_Ba rate_Li rate_NO3 rate_O2aq rate_H2O' # change in kg at every node / dt
fp = the_simple_fluid
temperature_unit = Celsius
[]
[Materials]
[porosity_caps]
type = PorousFlowPorosityConst # this simulation has no porosity changes from dissolution
block = 0
porosity = 0.01
[]
[porosity_aquifer]
type = PorousFlowPorosityConst # this simulation has no porosity changes from dissolution
block = aquifer
porosity = 0.063
[]
[permeability_caps]
type = PorousFlowPermeabilityConst
block = 0
permeability = '1E-18 0 0 0 1E-18 0 0 0 1E-18'
[]
[permeability_aquifer]
type = PorousFlowPermeabilityConst
block = aquifer
permeability = '1.7E-15 0 0 0 1.7E-15 0 0 0 4.1E-16'
[]
[thermal_conductivity]
type = PorousFlowThermalConductivityIdeal
dry_thermal_conductivity = '0 0 0 0 0 0 0 0 0'
[]
[rock_heat]
type = PorousFlowMatrixInternalEnergy
density = 2500.0
specific_heat_capacity = 1200.0
[]
[]
[Preconditioning]
active = typically_efficient
[typically_efficient]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = ' hypre boomeramg'
[]
[strong]
type = SMP
full = true
petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = ' asm ilu NONZERO 2'
[]
[probably_too_strong]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
[]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 7.76E6 # 90 days
[TimeStepper]
type = FunctionDT
function = 'min(3E4, max(1E4, 0.2 * t))'
[]
[]
[Outputs]
exodus = true
[]
[Variables]
[f_H]
initial_condition = -2.952985071156e-06
[]
[f_Cl]
initial_condition = 0.04870664551708
[]
[f_SO4]
initial_condition = 0.0060359986852517
[]
[f_HCO3]
initial_condition = 5.0897287594019e-05
[]
[f_SiO2aq]
initial_condition = 3.0246609868421e-05
[]
[f_Al]
initial_condition = 3.268028901929e-08
[]
[f_Ca]
initial_condition = 0.00082159428184586
[]
[f_Mg]
initial_condition = 1.8546347062146e-05
[]
[f_Fe]
initial_condition = 4.3291908204093e-05
[]
[f_K]
initial_condition = 6.8434768308898e-05
[]
[f_Na]
initial_condition = 0.033298053919671
[]
[f_Sr]
initial_condition = 1.2771866652177e-05
[]
[f_F]
initial_condition = 5.5648860174073e-06
[]
[f_BOH]
initial_condition = 0.0003758574621917
[]
[f_Br]
initial_condition = 9.0315286107068e-05
[]
[f_Ba]
initial_condition = 1.5637460875161e-07
[]
[f_Li]
initial_condition = 8.3017067912701e-05
[]
[f_NO3]
initial_condition = 0.00010958455036169
[]
[f_O2aq]
initial_condition = -7.0806852373351e-05
[]
[porepressure]
initial_condition = 30E6
[]
[temperature]
initial_condition = 92
scaling = 1E-6 # fluid enthalpy is roughly 1E6
[]
[]
[DiracKernels]
[inject_H]
type = PorousFlowPolyLineSink
SumQuantityUO = injected_mass
fluxes = ${injection_rate}
p_or_t_vals = 0.0
multiplying_var = injection_rate_massfrac_H
point_file = injection.bh
variable = f_H
[]
[inject_Cl]
type = PorousFlowPolyLineSink
SumQuantityUO = injected_mass
fluxes = ${injection_rate}
p_or_t_vals = 0.0
multiplying_var = injection_rate_massfrac_Cl
point_file = injection.bh
variable = f_Cl
[]
[inject_SO4]
type = PorousFlowPolyLineSink
SumQuantityUO = injected_mass
fluxes = ${injection_rate}
p_or_t_vals = 0.0
multiplying_var = injection_rate_massfrac_SO4
point_file = injection.bh
variable = f_SO4
[]
[inject_HCO3]
type = PorousFlowPolyLineSink
SumQuantityUO = injected_mass
fluxes = ${injection_rate}
p_or_t_vals = 0.0
multiplying_var = injection_rate_massfrac_HCO3
point_file = injection.bh
variable = f_HCO3
[]
[inject_SiO2aq]
type = PorousFlowPolyLineSink
SumQuantityUO = injected_mass
fluxes = ${injection_rate}
p_or_t_vals = 0.0
multiplying_var = injection_rate_massfrac_SiO2aq
point_file = injection.bh
variable = f_SiO2aq
[]
[inject_Al]
type = PorousFlowPolyLineSink
SumQuantityUO = injected_mass
fluxes = ${injection_rate}
p_or_t_vals = 0.0
multiplying_var = injection_rate_massfrac_Al
point_file = injection.bh
variable = f_Al
[]
[inject_Ca]
type = PorousFlowPolyLineSink
SumQuantityUO = injected_mass
fluxes = ${injection_rate}
p_or_t_vals = 0.0
multiplying_var = injection_rate_massfrac_Ca
point_file = injection.bh
variable = f_Ca
[]
[inject_Mg]
type = PorousFlowPolyLineSink
SumQuantityUO = injected_mass
fluxes = ${injection_rate}
p_or_t_vals = 0.0
multiplying_var = injection_rate_massfrac_Mg
point_file = injection.bh
variable = f_Mg
[]
[inject_Fe]
type = PorousFlowPolyLineSink
SumQuantityUO = injected_mass
fluxes = ${injection_rate}
p_or_t_vals = 0.0
multiplying_var = injection_rate_massfrac_Fe
point_file = injection.bh
variable = f_Fe
[]
[inject_K]
type = PorousFlowPolyLineSink
SumQuantityUO = injected_mass
fluxes = ${injection_rate}
p_or_t_vals = 0.0
multiplying_var = injection_rate_massfrac_K
point_file = injection.bh
variable = f_K
[]
[inject_Na]
type = PorousFlowPolyLineSink
SumQuantityUO = injected_mass
fluxes = ${injection_rate}
p_or_t_vals = 0.0
multiplying_var = injection_rate_massfrac_Na
point_file = injection.bh
variable = f_Na
[]
[inject_Sr]
type = PorousFlowPolyLineSink
SumQuantityUO = injected_mass
fluxes = ${injection_rate}
p_or_t_vals = 0.0
multiplying_var = injection_rate_massfrac_Sr
point_file = injection.bh
variable = f_Sr
[]
[inject_F]
type = PorousFlowPolyLineSink
SumQuantityUO = injected_mass
fluxes = ${injection_rate}
p_or_t_vals = 0.0
multiplying_var = injection_rate_massfrac_F
point_file = injection.bh
variable = f_F
[]
[inject_BOH]
type = PorousFlowPolyLineSink
SumQuantityUO = injected_mass
fluxes = ${injection_rate}
p_or_t_vals = 0.0
multiplying_var = injection_rate_massfrac_BOH
point_file = injection.bh
variable = f_BOH
[]
[inject_Br]
type = PorousFlowPolyLineSink
SumQuantityUO = injected_mass
fluxes = ${injection_rate}
p_or_t_vals = 0.0
multiplying_var = injection_rate_massfrac_Br
point_file = injection.bh
variable = f_Br
[]
[inject_Ba]
type = PorousFlowPolyLineSink
SumQuantityUO = injected_mass
fluxes = ${injection_rate}
p_or_t_vals = 0.0
multiplying_var = injection_rate_massfrac_Ba
point_file = injection.bh
variable = f_Ba
[]
[inject_Li]
type = PorousFlowPolyLineSink
SumQuantityUO = injected_mass
fluxes = ${injection_rate}
p_or_t_vals = 0.0
multiplying_var = injection_rate_massfrac_Li
point_file = injection.bh
variable = f_Li
[]
[inject_NO3]
type = PorousFlowPolyLineSink
SumQuantityUO = injected_mass
fluxes = ${injection_rate}
p_or_t_vals = 0.0
multiplying_var = injection_rate_massfrac_NO3
point_file = injection.bh
variable = f_NO3
[]
[inject_O2aq]
type = PorousFlowPolyLineSink
SumQuantityUO = injected_mass
fluxes = ${injection_rate}
p_or_t_vals = 0.0
multiplying_var = injection_rate_massfrac_O2aq
point_file = injection.bh
variable = f_O2aq
[]
[inject_H2O]
type = PorousFlowPolyLineSink
SumQuantityUO = injected_mass
fluxes = ${injection_rate}
p_or_t_vals = 0.0
multiplying_var = injection_rate_massfrac_H2O
point_file = injection.bh
variable = porepressure
[]
[produce_H]
type = PorousFlowPolyLineSink
SumQuantityUO = produced_mass_H
fluxes = ${production_rate}
p_or_t_vals = 0.0
mass_fraction_component = 0
point_file = production.bh
variable = f_H
[]
[produce_Cl]
type = PorousFlowPolyLineSink
SumQuantityUO = produced_mass_Cl
fluxes = ${production_rate}
p_or_t_vals = 0.0
mass_fraction_component = 1
point_file = production.bh
variable = f_Cl
[]
[produce_SO4]
type = PorousFlowPolyLineSink
SumQuantityUO = produced_mass_SO4
fluxes = ${production_rate}
p_or_t_vals = 0.0
mass_fraction_component = 2
point_file = production.bh
variable = f_SO4
[]
[produce_HCO3]
type = PorousFlowPolyLineSink
SumQuantityUO = produced_mass_HCO3
fluxes = ${production_rate}
p_or_t_vals = 0.0
mass_fraction_component = 3
point_file = production.bh
variable = f_HCO3
[]
[produce_SiO2aq]
type = PorousFlowPolyLineSink
SumQuantityUO = produced_mass_SiO2aq
fluxes = ${production_rate}
p_or_t_vals = 0.0
mass_fraction_component = 4
point_file = production.bh
variable = f_SiO2aq
[]
[produce_Al]
type = PorousFlowPolyLineSink
SumQuantityUO = produced_mass_Al
fluxes = ${production_rate}
p_or_t_vals = 0.0
mass_fraction_component = 5
point_file = production.bh
variable = f_Al
[]
[produce_Ca]
type = PorousFlowPolyLineSink
SumQuantityUO = produced_mass_Ca
fluxes = ${production_rate}
p_or_t_vals = 0.0
mass_fraction_component = 6
point_file = production.bh
variable = f_Ca
[]
[produce_Mg]
type = PorousFlowPolyLineSink
SumQuantityUO = produced_mass_Mg
fluxes = ${production_rate}
p_or_t_vals = 0.0
mass_fraction_component = 7
point_file = production.bh
variable = f_Mg
[]
[produce_Fe]
type = PorousFlowPolyLineSink
SumQuantityUO = produced_mass_Fe
fluxes = ${production_rate}
p_or_t_vals = 0.0
mass_fraction_component = 8
point_file = production.bh
variable = f_Fe
[]
[produce_K]
type = PorousFlowPolyLineSink
SumQuantityUO = produced_mass_K
fluxes = ${production_rate}
p_or_t_vals = 0.0
mass_fraction_component = 9
point_file = production.bh
variable = f_K
[]
[produce_Na]
type = PorousFlowPolyLineSink
SumQuantityUO = produced_mass_Na
fluxes = ${production_rate}
p_or_t_vals = 0.0
mass_fraction_component = 10
point_file = production.bh
variable = f_Na
[]
[produce_Sr]
type = PorousFlowPolyLineSink
SumQuantityUO = produced_mass_Sr
fluxes = ${production_rate}
p_or_t_vals = 0.0
mass_fraction_component = 11
point_file = production.bh
variable = f_Sr
[]
[produce_F]
type = PorousFlowPolyLineSink
SumQuantityUO = produced_mass_F
fluxes = ${production_rate}
p_or_t_vals = 0.0
mass_fraction_component = 12
point_file = production.bh
variable = f_F
[]
[produce_BOH]
type = PorousFlowPolyLineSink
SumQuantityUO = produced_mass_BOH
fluxes = ${production_rate}
p_or_t_vals = 0.0
mass_fraction_component = 13
point_file = production.bh
variable = f_BOH
[]
[produce_Br]
type = PorousFlowPolyLineSink
SumQuantityUO = produced_mass_Br
fluxes = ${production_rate}
p_or_t_vals = 0.0
mass_fraction_component = 14
point_file = production.bh
variable = f_Br
[]
[produce_Ba]
type = PorousFlowPolyLineSink
SumQuantityUO = produced_mass_Ba
fluxes = ${production_rate}
p_or_t_vals = 0.0
mass_fraction_component = 15
point_file = production.bh
variable = f_Ba
[]
[produce_Li]
type = PorousFlowPolyLineSink
SumQuantityUO = produced_mass_Li
fluxes = ${production_rate}
p_or_t_vals = 0.0
mass_fraction_component = 16
point_file = production.bh
variable = f_Li
[]
[produce_NO3]
type = PorousFlowPolyLineSink
SumQuantityUO = produced_mass_NO3
fluxes = ${production_rate}
p_or_t_vals = 0.0
mass_fraction_component = 17
point_file = production.bh
variable = f_NO3
[]
[produce_O2aq]
type = PorousFlowPolyLineSink
SumQuantityUO = produced_mass_O2aq
fluxes = ${production_rate}
p_or_t_vals = 0.0
mass_fraction_component = 18
point_file = production.bh
variable = f_O2aq
[]
[produce_H2O]
type = PorousFlowPolyLineSink
SumQuantityUO = produced_mass_H2O
fluxes = ${production_rate}
p_or_t_vals = 0.0
mass_fraction_component = 19
point_file = production.bh
variable = porepressure
[]
[produce_heat]
type = PorousFlowPolyLineSink
SumQuantityUO = produced_heat
fluxes = ${production_rate}
p_or_t_vals = 0.0
use_enthalpy = true
point_file = production.bh
variable = temperature
[]
[]
[UserObjects]
[injected_mass]
type = PorousFlowSumQuantity
[]
[produced_mass_H]
type = PorousFlowSumQuantity
[]
[produced_mass_Cl]
type = PorousFlowSumQuantity
[]
[produced_mass_SO4]
type = PorousFlowSumQuantity
[]
[produced_mass_HCO3]
type = PorousFlowSumQuantity
[]
[produced_mass_SiO2aq]
type = PorousFlowSumQuantity
[]
[produced_mass_Al]
type = PorousFlowSumQuantity
[]
[produced_mass_Ca]
type = PorousFlowSumQuantity
[]
[produced_mass_Mg]
type = PorousFlowSumQuantity
[]
[produced_mass_Fe]
type = PorousFlowSumQuantity
[]
[produced_mass_K]
type = PorousFlowSumQuantity
[]
[produced_mass_Na]
type = PorousFlowSumQuantity
[]
[produced_mass_Sr]
type = PorousFlowSumQuantity
[]
[produced_mass_F]
type = PorousFlowSumQuantity
[]
[produced_mass_BOH]
type = PorousFlowSumQuantity
[]
[produced_mass_Br]
type = PorousFlowSumQuantity
[]
[produced_mass_Ba]
type = PorousFlowSumQuantity
[]
[produced_mass_Li]
type = PorousFlowSumQuantity
[]
[produced_mass_NO3]
type = PorousFlowSumQuantity
[]
[produced_mass_O2aq]
type = PorousFlowSumQuantity
[]
[produced_mass_H2O]
type = PorousFlowSumQuantity
[]
[produced_heat]
type = PorousFlowSumQuantity
[]
[]
[Postprocessors]
[dt]
type = TimestepSize
execute_on = TIMESTEP_BEGIN
[]
[tot_kg_injected_this_timestep]
type = PorousFlowPlotQuantity
uo = injected_mass
[]
[kg_H_produced_this_timestep]
type = PorousFlowPlotQuantity
uo = produced_mass_H
[]
[kg_Cl_produced_this_timestep]
type = PorousFlowPlotQuantity
uo = produced_mass_Cl
[]
[kg_SO4_produced_this_timestep]
type = PorousFlowPlotQuantity
uo = produced_mass_SO4
[]
[kg_HCO3_produced_this_timestep]
type = PorousFlowPlotQuantity
uo = produced_mass_HCO3
[]
[kg_SiO2aq_produced_this_timestep]
type = PorousFlowPlotQuantity
uo = produced_mass_SiO2aq
[]
[kg_Al_produced_this_timestep]
type = PorousFlowPlotQuantity
uo = produced_mass_Al
[]
[kg_Ca_produced_this_timestep]
type = PorousFlowPlotQuantity
uo = produced_mass_Ca
[]
[kg_Mg_produced_this_timestep]
type = PorousFlowPlotQuantity
uo = produced_mass_Mg
[]
[kg_Fe_produced_this_timestep]
type = PorousFlowPlotQuantity
uo = produced_mass_Fe
[]
[kg_K_produced_this_timestep]
type = PorousFlowPlotQuantity
uo = produced_mass_K
[]
[kg_Na_produced_this_timestep]
type = PorousFlowPlotQuantity
uo = produced_mass_Na
[]
[kg_Sr_produced_this_timestep]
type = PorousFlowPlotQuantity
uo = produced_mass_Sr
[]
[kg_F_produced_this_timestep]
type = PorousFlowPlotQuantity
uo = produced_mass_F
[]
[kg_BOH_produced_this_timestep]
type = PorousFlowPlotQuantity
uo = produced_mass_BOH
[]
[kg_Br_produced_this_timestep]
type = PorousFlowPlotQuantity
uo = produced_mass_Br
[]
[kg_Ba_produced_this_timestep]
type = PorousFlowPlotQuantity
uo = produced_mass_Ba
[]
[kg_Li_produced_this_timestep]
type = PorousFlowPlotQuantity
uo = produced_mass_Li
[]
[kg_NO3_produced_this_timestep]
type = PorousFlowPlotQuantity
uo = produced_mass_NO3
[]
[kg_O2aq_produced_this_timestep]
type = PorousFlowPlotQuantity
uo = produced_mass_O2aq
[]
[kg_H2O_produced_this_timestep]
type = PorousFlowPlotQuantity
uo = produced_mass_H2O
[]
[mole_rate_H_produced]
type = FunctionValuePostprocessor
function = moles_H
indirect_dependencies = 'kg_H_produced_this_timestep dt'
[]
[mole_rate_Cl_produced]
type = FunctionValuePostprocessor
function = moles_Cl
indirect_dependencies = 'kg_Cl_produced_this_timestep dt'
[]
[mole_rate_SO4_produced]
type = FunctionValuePostprocessor
function = moles_SO4
indirect_dependencies = 'kg_SO4_produced_this_timestep dt'
[]
[mole_rate_HCO3_produced]
type = FunctionValuePostprocessor
function = moles_HCO3
indirect_dependencies = 'kg_HCO3_produced_this_timestep dt'
[]
[mole_rate_SiO2aq_produced]
type = FunctionValuePostprocessor
function = moles_SiO2aq
indirect_dependencies = 'kg_SiO2aq_produced_this_timestep dt'
[]
[mole_rate_Al_produced]
type = FunctionValuePostprocessor
function = moles_Al
indirect_dependencies = 'kg_Al_produced_this_timestep dt'
[]
[mole_rate_Ca_produced]
type = FunctionValuePostprocessor
function = moles_Ca
indirect_dependencies = 'kg_Ca_produced_this_timestep dt'
[]
[mole_rate_Mg_produced]
type = FunctionValuePostprocessor
function = moles_Mg
indirect_dependencies = 'kg_Mg_produced_this_timestep dt'
[]
[mole_rate_Fe_produced]
type = FunctionValuePostprocessor
function = moles_Fe
indirect_dependencies = 'kg_Fe_produced_this_timestep dt'
[]
[mole_rate_K_produced]
type = FunctionValuePostprocessor
function = moles_K
indirect_dependencies = 'kg_K_produced_this_timestep dt'
[]
[mole_rate_Na_produced]
type = FunctionValuePostprocessor
function = moles_Na
indirect_dependencies = 'kg_Na_produced_this_timestep dt'
[]
[mole_rate_Sr_produced]
type = FunctionValuePostprocessor
function = moles_Sr
indirect_dependencies = 'kg_Sr_produced_this_timestep dt'
[]
[mole_rate_F_produced]
type = FunctionValuePostprocessor
function = moles_F
indirect_dependencies = 'kg_F_produced_this_timestep dt'
[]
[mole_rate_BOH_produced]
type = FunctionValuePostprocessor
function = moles_BOH
indirect_dependencies = 'kg_BOH_produced_this_timestep dt'
[]
[mole_rate_Br_produced]
type = FunctionValuePostprocessor
function = moles_Br
indirect_dependencies = 'kg_Br_produced_this_timestep dt'
[]
[mole_rate_Ba_produced]
type = FunctionValuePostprocessor
function = moles_Ba
indirect_dependencies = 'kg_Ba_produced_this_timestep dt'
[]
[mole_rate_Li_produced]
type = FunctionValuePostprocessor
function = moles_Li
indirect_dependencies = 'kg_Li_produced_this_timestep dt'
[]
[mole_rate_NO3_produced]
type = FunctionValuePostprocessor
function = moles_NO3
indirect_dependencies = 'kg_NO3_produced_this_timestep dt'
[]
[mole_rate_O2aq_produced]
type = FunctionValuePostprocessor
function = moles_O2aq
indirect_dependencies = 'kg_O2aq_produced_this_timestep dt'
[]
[mole_rate_H2O_produced]
type = FunctionValuePostprocessor
function = moles_H2O
indirect_dependencies = 'kg_H2O_produced_this_timestep dt'
[]
[heat_joules_extracted_this_timestep]
type = PorousFlowPlotQuantity
uo = produced_heat
[]
[production_temperature]
type = AverageNodalVariableValue
boundary = production_nodes
variable = temperature
[]
[]
[Functions]
[moles_H]
type = ParsedFunction
symbol_names = 'kg_H dt'
symbol_values = 'kg_H_produced_this_timestep dt'
expression = 'kg_H * 1000 / 1.0079 / dt'
[]
[moles_Cl]
type = ParsedFunction
symbol_names = 'kg_Cl dt'
symbol_values = 'kg_Cl_produced_this_timestep dt'
expression = 'kg_Cl * 1000 / 35.453 / dt'
[]
[moles_SO4]
type = ParsedFunction
symbol_names = 'kg_SO4 dt'
symbol_values = 'kg_SO4_produced_this_timestep dt'
expression = 'kg_SO4 * 1000 / 96.0576 / dt'
[]
[moles_HCO3]
type = ParsedFunction
symbol_names = 'kg_HCO3 dt'
symbol_values = 'kg_HCO3_produced_this_timestep dt'
expression = 'kg_HCO3 * 1000 / 61.0171 / dt'
[]
[moles_SiO2aq]
type = ParsedFunction
symbol_names = 'kg_SiO2aq dt'
symbol_values = 'kg_SiO2aq_produced_this_timestep dt'
expression = 'kg_SiO2aq * 1000 / 60.0843 / dt'
[]
[moles_Al]
type = ParsedFunction
symbol_names = 'kg_Al dt'
symbol_values = 'kg_Al_produced_this_timestep dt'
expression = 'kg_Al * 1000 / 26.9815 / dt'
[]
[moles_Ca]
type = ParsedFunction
symbol_names = 'kg_Ca dt'
symbol_values = 'kg_Ca_produced_this_timestep dt'
expression = 'kg_Ca * 1000 / 40.08 / dt'
[]
[moles_Mg]
type = ParsedFunction
symbol_names = 'kg_Mg dt'
symbol_values = 'kg_Mg_produced_this_timestep dt'
expression = 'kg_Mg * 1000 / 24.305 / dt'
[]
[moles_Fe]
type = ParsedFunction
symbol_names = 'kg_Fe dt'
symbol_values = 'kg_Fe_produced_this_timestep dt'
expression = 'kg_Fe * 1000 / 55.847 / dt'
[]
[moles_K]
type = ParsedFunction
symbol_names = 'kg_K dt'
symbol_values = 'kg_K_produced_this_timestep dt'
expression = 'kg_K * 1000 / 39.0983 / dt'
[]
[moles_Na]
type = ParsedFunction
symbol_names = 'kg_Na dt'
symbol_values = 'kg_Na_produced_this_timestep dt'
expression = 'kg_Na * 1000 / 22.9898 / dt'
[]
[moles_Sr]
type = ParsedFunction
symbol_names = 'kg_Sr dt'
symbol_values = 'kg_Sr_produced_this_timestep dt'
expression = 'kg_Sr * 1000 / 87.62 / dt'
[]
[moles_F]
type = ParsedFunction
symbol_names = 'kg_F dt'
symbol_values = 'kg_F_produced_this_timestep dt'
expression = 'kg_F * 1000 / 18.9984 / dt'
[]
[moles_BOH]
type = ParsedFunction
symbol_names = 'kg_BOH dt'
symbol_values = 'kg_BOH_produced_this_timestep dt'
expression = 'kg_BOH * 1000 / 61.8329 / dt'
[]
[moles_Br]
type = ParsedFunction
symbol_names = 'kg_Br dt'
symbol_values = 'kg_Br_produced_this_timestep dt'
expression = 'kg_Br * 1000 / 79.904 / dt'
[]
[moles_Ba]
type = ParsedFunction
symbol_names = 'kg_Ba dt'
symbol_values = 'kg_Ba_produced_this_timestep dt'
expression = 'kg_Ba * 1000 / 137.33 / dt'
[]
[moles_Li]
type = ParsedFunction
symbol_names = 'kg_Li dt'
symbol_values = 'kg_Li_produced_this_timestep dt'
expression = 'kg_Li * 1000 / 6.941 / dt'
[]
[moles_NO3]
type = ParsedFunction
symbol_names = 'kg_NO3 dt'
symbol_values = 'kg_NO3_produced_this_timestep dt'
expression = 'kg_NO3 * 1000 / 62.0049 / dt'
[]
[moles_O2aq]
type = ParsedFunction
symbol_names = 'kg_O2aq dt'
symbol_values = 'kg_O2aq_produced_this_timestep dt'
expression = 'kg_O2aq * 1000 / 31.9988 / dt'
[]
[moles_H2O]
type = ParsedFunction
symbol_names = 'kg_H2O dt'
symbol_values = 'kg_H2O_produced_this_timestep dt'
expression = 'kg_H2O * 1000 / 18.01801802 / dt'
[]
[]
[AuxVariables]
[injection_temperature]
initial_condition = 92
[]
[injection_rate_massfrac_H]
initial_condition = -2.952985071156e-06
[]
[injection_rate_massfrac_Cl]
initial_condition = 0.04870664551708
[]
[injection_rate_massfrac_SO4]
initial_condition = 0.0060359986852517
[]
[injection_rate_massfrac_HCO3]
initial_condition = 5.0897287594019e-05
[]
[injection_rate_massfrac_SiO2aq]
initial_condition = 3.0246609868421e-05
[]
[injection_rate_massfrac_Al]
initial_condition = 3.268028901929e-08
[]
[injection_rate_massfrac_Ca]
initial_condition = 0.00082159428184586
[]
[injection_rate_massfrac_Mg]
initial_condition = 1.8546347062146e-05
[]
[injection_rate_massfrac_Fe]
initial_condition = 4.3291908204093e-05
[]
[injection_rate_massfrac_K]
initial_condition = 6.8434768308898e-05
[]
[injection_rate_massfrac_Na]
initial_condition = 0.033298053919671
[]
[injection_rate_massfrac_Sr]
initial_condition = 1.2771866652177e-05
[]
[injection_rate_massfrac_F]
initial_condition = 5.5648860174073e-06
[]
[injection_rate_massfrac_BOH]
initial_condition = 0.0003758574621917
[]
[injection_rate_massfrac_Br]
initial_condition = 9.0315286107068e-05
[]
[injection_rate_massfrac_Ba]
initial_condition = 1.5637460875161e-07
[]
[injection_rate_massfrac_Li]
initial_condition = 8.3017067912701e-05
[]
[injection_rate_massfrac_NO3]
initial_condition = 0.00010958455036169
[]
[injection_rate_massfrac_O2aq]
initial_condition = -7.0806852373351e-05
[]
[injection_rate_massfrac_H2O]
initial_condition = 0.91032275033842
[]
[rate_H]
[]
[rate_Cl]
[]
[rate_SO4]
[]
[rate_HCO3]
[]
[rate_SiO2aq]
[]
[rate_Al]
[]
[rate_Ca]
[]
[rate_Mg]
[]
[rate_Fe]
[]
[rate_K]
[]
[rate_Na]
[]
[rate_Sr]
[]
[rate_F]
[]
[rate_BOH]
[]
[rate_Br]
[]
[rate_Ba]
[]
[rate_Li]
[]
[rate_NO3]
[]
[rate_O2aq]
[]
[rate_H2O]
[]
[]
[MultiApps]
[react]
type = TransientMultiApp
input_files = aquifer_geochemistry.i
clone_master_mesh = true
execute_on = 'timestep_end'
[]
[]
[Transfers]
[changes_due_to_flow]
type = MultiAppCopyTransfer
source_variable = 'rate_H rate_Cl rate_SO4 rate_HCO3 rate_SiO2aq rate_Al rate_Ca rate_Mg rate_Fe rate_K rate_Na rate_Sr rate_F rate_BOH rate_Br rate_Ba rate_Li rate_NO3 rate_O2aq rate_H2O temperature'
variable = 'pf_rate_H pf_rate_Cl pf_rate_SO4 pf_rate_HCO3 pf_rate_SiO2aq pf_rate_Al pf_rate_Ca pf_rate_Mg pf_rate_Fe pf_rate_K pf_rate_Na pf_rate_Sr pf_rate_F pf_rate_BOH pf_rate_Br pf_rate_Ba pf_rate_Li pf_rate_NO3 pf_rate_O2aq pf_rate_H2O temperature'
to_multi_app = react
[]
[massfrac_from_geochem]
type = MultiAppCopyTransfer
source_variable = 'massfrac_H massfrac_Cl massfrac_SO4 massfrac_HCO3 massfrac_SiO2aq massfrac_Al massfrac_Ca massfrac_Mg massfrac_Fe massfrac_K massfrac_Na massfrac_Sr massfrac_F massfrac_BOH massfrac_Br massfrac_Ba massfrac_Li massfrac_NO3 massfrac_O2aq '
variable = 'f_H f_Cl f_SO4 f_HCO3 f_SiO2aq f_Al f_Ca f_Mg f_Fe f_K f_Na f_Sr f_F f_BOH f_Br f_Ba f_Li f_NO3 f_O2aq '
from_multi_app = react
[]
[]
(test/tests/meshgenerators/elements_to_tetrahedrons_convertor/simple_convert.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 3
nx = 1
ny = 2
nz = 2
[]
[block_1]
type = ParsedSubdomainMeshGenerator
input = gmg
combinatorial_geometry = 'z>0.5'
block_id = 1
[]
[convert]
type = ElementsToTetrahedronsConverter
input = block_1
[]
[]
(test/tests/transfers/general_field/shape_evaluation/subdomain/main.i)
# Base input for testing transfers. It has the following complexities:
# - more than one subapp
# - transfers both from and to the subapps
# - both nodal and elemental variables
# - subapp meshes are not aligned with the main app
# Tests derived from this input may add complexities through command line arguments
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 5
ny = 5
[]
[add_block]
type = ParsedSubdomainMeshGenerator
input = gmg
combinatorial_geometry = 'x < 0.6 & y < 0.5'
block_id = 1
[]
[]
[AuxVariables]
[from_sub]
initial_condition = -1
[]
[from_sub_elem]
order = CONSTANT
family = MONOMIAL
initial_condition = -1
[]
[to_sub]
[InitialCondition]
type = FunctionIC
function = '1 + 2*x*x + 3*y*y*y'
[]
[]
[to_sub_elem]
order = CONSTANT
family = MONOMIAL
[InitialCondition]
type = FunctionIC
function = '2 + 2*x*x + 3*y*y*y'
[]
[]
[]
[Executioner]
type = Transient
num_steps = 1
[]
[Problem]
solve = false
[]
[Outputs]
[out]
type = Exodus
hide = 'to_sub to_sub_elem'
[]
execute_on = 'TIMESTEP_END'
[]
[MultiApps]
[sub]
# 1 on corner, one in the center and one close to a corner
# Offsets are added to make sure there are no equidistant nodes / transfer indetermination
positions = '0 0 0 0.41111 0.28111 0 0.7232323 0.12323 0'
type = TransientMultiApp
app_type = MooseTestApp
input_files = sub.i
execute_on = timestep_end
output_in_position = true
[]
[]
[Transfers]
[to_sub]
type = MultiAppGeneralFieldShapeEvaluationTransfer
to_multi_app = sub
source_variable = to_sub
variable = from_main
from_blocks = 1
to_blocks = 1
extrapolation_constant = -1
[]
[to_sub_elem]
type = MultiAppGeneralFieldShapeEvaluationTransfer
to_multi_app = sub
source_variable = to_sub_elem
variable = from_main_elem
from_blocks = 1
to_blocks = 1
extrapolation_constant = -1
[]
[from_sub]
type = MultiAppGeneralFieldShapeEvaluationTransfer
from_multi_app = sub
source_variable = to_main
variable = from_sub
from_blocks = 1
to_blocks = 1
extrapolation_constant = -1
[]
[from_sub_elem]
type = MultiAppGeneralFieldShapeEvaluationTransfer
from_multi_app = sub
source_variable = to_main_elem
variable = from_sub_elem
from_blocks = 1
to_blocks = 1
extrapolation_constant = -1
[]
[]
(modules/xfem/test/tests/nucleation_uo/nucleate_edge_crack_2d.i)
[GlobalParams]
displacements = 'disp_x disp_y'
volumetric_locking_correction = true
[]
[XFEM]
geometric_cut_userobjects = 'cut_mesh2'
qrule = volfrac
output_cut_plane = true
[]
[Mesh]
[gen]
type = GeneratedMeshGenerator
dim = 2
nx = 20
ny = 10
xmin = 0
xmax = 2
ymin = 0.0
ymax = 1.0
elem_type = QUAD4
[]
[top_left]
type = BoundingBoxNodeSetGenerator
new_boundary = pull_top_left
bottom_left = '-0.01 0.99 0'
top_right = '0.11 1.01 0'
input = gen
[]
[top_right]
type = BoundingBoxNodeSetGenerator
new_boundary = pull_top_right
bottom_left = '1.89 0.99 0'
top_right = '2.01 1.01 0'
input = top_left
[]
[top_middle_ss]
type = SideSetsFromBoundingBoxGenerator
input = top_right
bottom_left = '0.79 0.89 0'
top_right = '1.21 1.01 0'
block_id = '0'
boundary_new = top_middle_ss
boundaries_old = top
[]
[nucleate]
type = ParsedSubdomainMeshGenerator
input = top_middle_ss
combinatorial_geometry = 'y > 0.39 & y < 0.51'
block_id = 10
[]
[]
[DomainIntegral]
integrals = 'InteractionIntegralKI InteractionIntegralKII'
displacements = 'disp_x disp_y'
crack_front_points_provider = cut_mesh2
2d=true
number_points_from_provider = 0
crack_direction_method = CurvedCrackFront
radius_inner = '0.15'
radius_outer = '0.45'
poissons_ratio = 0.3
youngs_modulus = 207000
block = 0
incremental = true
used_by_xfem_to_grow_crack = true
[]
[UserObjects]
[nucleate]
type = MeshCut2DRankTwoTensorNucleation
tensor = stress
scalar_type = MaxPrincipal
nucleation_threshold = nucleation_threshold
initiate_on_boundary = 'left right'
nucleation_length = .2
[]
[cut_mesh2]
type = MeshCut2DFractureUserObject
mesh_file = make_edge_crack_in.e
k_critical=230
growth_increment = 0.11
nucleate_uo = nucleate
[]
[]
[AuxVariables]
[nucleation_threshold]
order = CONSTANT
family = MONOMIAL
[]
[]
[ICs]
[nucleation_bulk]
type = ConstantIC
value = 10000
variable = nucleation_threshold
block = 0
[]
[nucleation_weak]
type = FunctionIC
function = nucleation_x
variable = nucleation_threshold
block = 10
[]
[]
[Functions]
[nucleation_x]
type = ParsedFunction
expression = '300+x*50'
[]
[]
[Modules/TensorMechanics/Master]
[./all]
strain = FINITE
planar_formulation = plane_strain
add_variables = true
generate_output = 'stress_xx stress_yy vonmises_stress max_principal_stress'
[../]
[]
[Functions]
[bc_pull_top]
type = ParsedFunction
expression = 0.0005*t
[]
[]
[BCs]
[top_edges]
type = FunctionDirichletBC
boundary = 'pull_top_left pull_top_right'
variable = disp_y
function = bc_pull_top
[]
[top_middle]
type = NeumannBC
boundary = top_middle_ss
variable = disp_y
value = -2000
[]
[bottom_x]
type = DirichletBC
boundary = bottom
variable = disp_x
value = 0.0
[]
[bottom_y]
type = DirichletBC
boundary = bottom
variable = disp_y
value = 0.0
[]
[]
[Materials]
[./elasticity_tensor]
type = ComputeIsotropicElasticityTensor
youngs_modulus = 207000
poissons_ratio = 0.3
[../]
[./stress]
type = ComputeFiniteStrainElasticStress
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
petsc_options_value = '201 hypre boomeramg 8'
line_search = 'none'
[./Predictor]
type = SimplePredictor
scale = 1.0
[../]
# controls for linear iterations
l_max_its = 100
l_tol = 1e-2
# controls for nonlinear iterations
nl_max_its = 15
nl_rel_tol = 1e-8
nl_abs_tol = 1e-9
# time control
start_time = 0.0
dt = 1.0
end_time = 5
max_xfem_update = 100
[]
[Outputs]
csv=true
execute_on = TIMESTEP_END
# [xfemcutter]
# type=XFEMCutMeshOutput
# xfem_cutter_uo=cut_mesh2
# []
# console = false
[./console]
type = Console
output_linear = false
output_nonlinear = false
[../]
[]
(test/tests/controls/libtorch_nn_control/read_control.i)
pi = 3.14159265359
period = 0.25
diff_coeff = 0.5
cp = 1.0
[Functions]
[src_func]
type = ParsedFunction
value = "sin(${pi}/${period}*t)"
[]
[]
[Mesh]
[msh]
type = GeneratedMeshGenerator
dim = 2
nx = 20
xmin = -0.5
xmax = 0.5
ny = 20
ymin = -0.5
ymax = 0.5
[]
[source_domain]
type = ParsedSubdomainMeshGenerator
input = msh
combinatorial_geometry = '(x<0.2 & x>-0.2) & (y<0.2 & y>-0.2)'
block_id = 1
[]
[]
[Variables]
[T]
initial_condition = 1
[]
[]
[Kernels]
[diffusion]
type = CoefDiffusion
variable = T
coef = ${diff_coeff}
[]
[source]
type = BodyForce
variable = T
function = src_func
block = 1
[]
[anti_source]
type = BodyForce
variable = T
value = 0
block = 1
[]
[time_deriv]
type = CoefTimeDerivative
Coefficient = ${cp}
variable = T
[]
[]
[BCs]
[neumann_rest]
type = NeumannBC
variable = T
boundary = 'left right top bottom'
value = 0
[]
[]
[Executioner]
type = Transient
num_steps = 25
dt = 0.1
solve_type = NEWTON
petsc_options_iname = '-pc_type'
petsc_options_value = 'lu'
nl_abs_tol = 1e-12
line_search = 'none'
[]
[Postprocessors]
[T_max]
type = NodalExtremeValue
variable = T
execute_on = 'INITIAL TIMESTEP_END'
[]
[control_value]
type = LibtorchControlValuePostprocessor
control_name = src_control
execute_on = 'INITIAL TIMESTEP_END'
[]
[]
[Controls]
[src_control]
type = LibtorchNeuralNetControl
parameters = "Kernels/anti_source/value"
responses = 'T_max'
[]
[]
[Reporters]
inactive = 'nn_parameters'
[T_reporter]
type = AccumulateReporter
reporters = 'T_max/value control_value/value'
outputs = csv_out
[]
[nn_parameters]
type = LibtorchArtificialNeuralNetParameters
control_name = src_control
execute_on = FINAL
outputs = json_out
[]
[]
[Outputs]
[csv_out]
type = CSV
execute_on = FINAL
[]
[json_out]
type = JSON
execute_on = FINAL
execute_system_information_on = NONE
[]
[]
(test/tests/postprocessors/element_integral/functors/element_integral_test.i)
[Mesh]
second_order = true
[square]
type = GeneratedMeshGenerator
nx = 2
ny = 2
dim = 2
[]
[block]
type = ParsedSubdomainMeshGenerator
input = square
block_id = 1
combinatorial_geometry = 'x > 0.5'
[]
[]
[Problem]
solve = false
[]
[Executioner]
type = Steady
[]
[AuxVariables]
[nodal]
[InitialCondition]
type = FunctionIC
function = '1 + x*x + y*y*y'
[]
[]
[fe_higher_order]
order = SECOND
[InitialCondition]
type = FunctionIC
function = '1 + x*x + y*y*y'
[]
[]
[fe_elemental]
family = MONOMIAL
order = SECOND
[InitialCondition]
type = FunctionIC
function = '1 + x*x + y*y*y'
[]
[]
[fv_var]
type = MooseVariableFVReal
[FVInitialCondition]
type = FVFunctionIC
function = '1 + x*x + y*y*y'
[]
[]
[]
[Functions]
[f]
type = ParsedFunction
expression = '1 + x*x + y*y*y'
[]
[]
[Materials]
[two_piece]
type = ADPiecewiseByBlockFunctorMaterial
prop_name = 'mat'
subdomain_to_prop_value = '0 nodal 1 fv_var'
[]
[]
[Postprocessors]
[fe]
type = ADElementIntegralFunctorPostprocessor
functor = nodal
[]
[fe_higher_order]
type = ADElementIntegralFunctorPostprocessor
functor = fe_higher_order
[]
[fe_elemental]
type = ADElementIntegralFunctorPostprocessor
functor = fe_elemental
[]
[fv]
type = ADElementIntegralFunctorPostprocessor
functor = fv_var
[]
[function]
type = ElementIntegralFunctorPostprocessor
functor = f
prefactor = f
[]
[functor_matprop]
type = ADElementIntegralFunctorPostprocessor
functor = mat
[]
[]
[Outputs]
file_base = out
exodus = false
csv = true
[]
(test/tests/transfers/general_field/shape_evaluation/boundary/sub.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 3
nx = 5
ny = 5
nz = 5
xmax = 0.3
ymax = 0.3
zmax = 0.3
[]
[add_block]
type = ParsedSubdomainMeshGenerator
input = gmg
combinatorial_geometry = 'x > 0.22 & y < 0.23'
block_id = 1
[]
[add_internal_sideset]
type = SideSetsBetweenSubdomainsGenerator
input = add_block
primary_block = 0
paired_block = 1
new_boundary = internal
[]
[]
[AuxVariables]
[from_main]
initial_condition = -1
[]
[from_main_elem]
order = CONSTANT
family = MONOMIAL
initial_condition = -1
[]
[to_main]
[InitialCondition]
type = FunctionIC
function = '3 + 2*x*x + 3*y*y*y'
[]
[]
[to_main_elem]
order = CONSTANT
family = MONOMIAL
[InitialCondition]
type = FunctionIC
function = '4 + 2*x*x + 3*y*y*y'
[]
[]
[]
[Executioner]
type = Transient
num_steps = 1
[]
[Problem]
solve = false
[]
[Outputs]
[out]
type = Exodus
hide = 'to_main to_main_elem'
overwrite = true
[]
[]
(test/tests/transfers/general_field/user_object/boundary/main.i)
# Base input for testing transfers. It has the following complexities:
# - more than one subapp
# - transfers both from and to the subapps
# - both nodal and elemental variables
# - subapp meshes are not aligned with the main app
# Tests derived from this input may add complexities through command line arguments
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 3
nx = 5
ny = 5
nz = 5
[]
[add_block]
type = ParsedSubdomainMeshGenerator
input = gmg
combinatorial_geometry = 'x < 0.5 & y < 0.5'
block_id = 1
[]
[add_internal_sideset]
type = SideSetsBetweenSubdomainsGenerator
input = add_block
primary_block = 0
paired_block = 1
new_boundary = internal
[]
[]
[AuxVariables]
[from_sub]
initial_condition = -1
[]
[from_sub_elem]
order = CONSTANT
family = MONOMIAL
initial_condition = -1
[]
[to_sub]
[InitialCondition]
type = FunctionIC
function = '1 + 2*x*x + 3*y*y*y'
[]
[]
[to_sub_elem]
order = CONSTANT
family = MONOMIAL
[InitialCondition]
type = FunctionIC
function = '2 + 2*x*x + 3*y*y*y'
[]
[]
[]
[UserObjects]
[to_sub]
type = LayeredAverage
direction = x
num_layers = 10
variable = to_sub
[]
[to_sub_elem]
type = LayeredAverage
direction = x
num_layers = 10
variable = to_sub_elem
[]
[]
[Executioner]
type = Transient
num_steps = 1
[]
[Problem]
solve = false
verbose_multiapps = true
[]
[Outputs]
[out]
type = Exodus
hide = 'to_sub to_sub_elem'
overwrite = true
[]
[]
[MultiApps]
[sub]
# 1 on corner, one in the center and one close to a corner
# The subapp mesh is a 0.3-sized cube, no overlap
positions = '0.2222 0 0 0.61111 0.311111 0.31111 0.76666 0.111111 0.81111'
type = TransientMultiApp
app_type = MooseTestApp
input_files = sub.i
execute_on = timestep_end
# Facilitates debugging
output_in_position = true
[]
[]
[Transfers]
# Boundary restrictions are added in the tests specification
[to_sub]
type = MultiAppGeneralFieldUserObjectTransfer
to_multi_app = sub
source_user_object = to_sub
variable = from_main
extrapolation_constant = -1
[]
[to_sub_elem]
type = MultiAppGeneralFieldUserObjectTransfer
to_multi_app = sub
source_user_object = to_sub_elem
variable = from_main_elem
extrapolation_constant = -1
[]
[from_sub]
type = MultiAppGeneralFieldUserObjectTransfer
from_multi_app = sub
source_user_object = to_main
variable = from_sub
extrapolation_constant = -1
[]
[from_sub_elem]
type = MultiAppGeneralFieldUserObjectTransfer
from_multi_app = sub
source_user_object = to_main_elem
variable = from_sub_elem
extrapolation_constant = -1
[]
[]
(test/tests/meshgenerators/cut_mesh_by_plane_generator/simple_cut.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 3
nx = 2
ny = 2
nz = 2
zmin = 0
zmax = 0.6
[]
[block_1]
type = ParsedSubdomainMeshGenerator
input = gmg
combinatorial_geometry = 'z>0.3'
block_id = 1
[]
[cut]
type = CutMeshByPlaneGenerator
input = block_1
plane_point = '0.5 0.5 0.3'
plane_normal = '1.0 0.9 0.8'
[]
[]
(modules/navier_stokes/test/tests/finite_volume/ins/pump/pump_loop_negative_rotation.i)
mu = 1.0
rho = 1.0
[Mesh]
[gen]
type = CartesianMeshGenerator
dim = 2
dx = '0.1 0.8 0.1'
dy = '0.1 0.8 0.1'
ix = '5 20 5'
iy = '5 20 5'
subdomain_id = '1 1 1
1 2 1
1 1 1'
[]
[delete_internal_part]
type = BlockDeletionGenerator
input = gen
block = '2'
new_boundary = 'wall-internal'
[]
[lump_bdries_to_wall]
type = RenameBoundaryGenerator
input = delete_internal_part
old_boundary = 'bottom right top left'
new_boundary = 'wall-external wall-external wall-external wall-external'
[]
[pump_domain]
type = ParsedSubdomainMeshGenerator
input = lump_bdries_to_wall
combinatorial_geometry = 'x > 0.3 & x < 0.4 & y > 0.5'
block_id = '3'
[]
[rename_blocks]
type = RenameBlockGenerator
input = pump_domain
old_block = '1 3'
new_block = 'pipe pump'
[]
[side_pump]
type = ParsedGenerateSideset
input = rename_blocks
included_subdomains = 'pump'
included_neighbors = 'pipe'
new_sideset_name = 'pump_side'
normal = '1 0 0'
combinatorial_geometry = 'x > 0.35'
[]
[]
[GlobalParams]
velocity_interp_method = 'rc'
advected_interp_method = 'upwind'
rhie_chow_user_object = 'rc'
[]
[Problem]
material_coverage_check = False
[]
[UserObjects]
[rc]
type = INSFVRhieChowInterpolator
u = vel_x
v = vel_y
pressure = pressure
correct_volumetric_force = true
volumetric_force_functors = 'pump_volume_force'
volume_force_correction_method = 'force-consistent'
[]
[]
[Variables]
[vel_x]
type = INSFVVelocityVariable
initial_condition = 1
[]
[vel_y]
type = INSFVVelocityVariable
initial_condition = 1
[]
[pressure]
type = INSFVPressureVariable
[]
[lambda]
family = SCALAR
order = FIRST
[]
[]
[AuxVariables]
[U]
order = CONSTANT
family = MONOMIAL
fv = true
[]
[]
[AuxKernels]
[mag]
type = VectorMagnitudeAux
variable = U
x = vel_x
y = vel_y
[]
[]
[FVKernels]
[mass]
type = INSFVMassAdvection
variable = pressure
rho = ${rho}
[]
[mean_zero_pressure]
type = FVIntegralValueConstraint
variable = pressure
lambda = lambda
phi0 = 0.0
[]
[u_advection]
type = INSFVMomentumAdvection
variable = vel_x
rho = ${rho}
momentum_component = 'x'
[]
[u_viscosity]
type = INSFVMomentumDiffusion
variable = vel_x
mu = ${mu}
momentum_component = 'x'
[]
[u_pressure]
type = INSFVMomentumPressure
variable = vel_x
momentum_component = 'x'
pressure = pressure
[]
[u_pump]
type = INSFVPump
variable = vel_x
momentum_component = 'x'
pump_volume_force = 'pump_volume_force'
block = 'pump'
[]
[v_advection]
type = INSFVMomentumAdvection
variable = vel_y
rho = ${rho}
momentum_component = 'y'
[]
[v_viscosity]
type = INSFVMomentumDiffusion
variable = vel_y
mu = ${mu}
momentum_component = 'y'
[]
[v_pressure]
type = INSFVMomentumPressure
variable = vel_y
momentum_component = 'y'
pressure = pressure
[]
[]
[FVBCs]
[walls-u]
type = INSFVNoSlipWallBC
boundary = 'wall-internal wall-external'
variable = vel_x
function = '0'
[]
[walls-v]
type = INSFVNoSlipWallBC
boundary = 'wall-internal wall-external'
variable = vel_y
function = '0'
[]
[]
[Functions]
[pump_head_negative]
type = PiecewiseLinear
x = '0.0 10.0'
y = '1000.0 0.0'
[]
[]
[FunctorMaterials]
[pump_mat]
type = NSFVPumpFunctorMaterial
rho = ${rho}
speed = 'U'
rotation_speed = 120
rotation_speed_rated = 100
area_rated = 0.1
volume_rated = 0.01
flow_rate_rated = 1.0
flow_rate = 'flow_rate'
block = 'pump'
enable_negative_rotation = true
symmetric_negative_pressure_head = false
pressure_head_function_negative_rotation = 'pump_head_negative'
[]
[]
[Postprocessors]
[flow_rate]
type = Receiver
default = 1.0
[]
[flow_rate_to_pipe]
type = VolumetricFlowRate
advected_quantity = ${rho}
boundary = 'pump_side'
vel_x = 'vel_x'
vel_y = 'vel_y'
[]
[maximum_speed]
type = ADElementExtremeFunctorValue
functor = vel_x
value_type = max
[]
[]
[Executioner]
type = Steady
solve_type = 'NEWTON'
petsc_options_iname = '-pc_type -pc_factor_shift_type'
petsc_options_value = 'lu NONZERO'
nl_rel_tol = 1e-12
[]
[Outputs]
exodus = false
[out]
type = CSV
execute_on = FINAL
show = 'flow_rate_to_pipe maximum_speed'
[]
[]
(modules/navier_stokes/test/tests/finite_volume/pins/channel-flow/heated/2d-rc-heated-effective.i)
mu = 1
rho = 1
cp = 1
u_inlet = 1
T_inlet = 200
advected_interp_method = 'average'
velocity_interp_method = 'rc'
[Mesh]
[gen]
type = GeneratedMeshGenerator
dim = 2
xmin = 0
xmax = 10
ymin = 0
ymax = 1
nx = 100
ny = 20
[]
[left]
type = ParsedSubdomainMeshGenerator
input = gen
combinatorial_geometry = 'x > 3 & x < 6'
block_id = 1
[]
[right]
type = ParsedSubdomainMeshGenerator
input = left
combinatorial_geometry = 'x < 3'
block_id = 2
[]
[more-right]
type = ParsedSubdomainMeshGenerator
input = right
combinatorial_geometry = 'x > 6'
block_id = 3
[]
[]
[GlobalParams]
rhie_chow_user_object = 'rc'
[]
[UserObjects]
[rc]
type = PINSFVRhieChowInterpolator
u = superficial_vel_x
v = superficial_vel_y
pressure = pressure
porosity = porosity
[]
[]
[Variables]
[superficial_vel_x]
type = PINSFVSuperficialVelocityVariable
initial_condition = ${u_inlet}
[]
[superficial_vel_y]
type = PINSFVSuperficialVelocityVariable
initial_condition = 1e-6
[]
[pressure]
type = INSFVPressureVariable
[]
[T_fluid]
type = INSFVEnergyVariable
[]
[]
[AuxVariables]
[T_solid]
family = 'MONOMIAL'
order = 'CONSTANT'
fv = true
initial_condition = 100
[]
[porosity]
family = MONOMIAL
order = CONSTANT
fv = true
initial_condition = 0.5
[]
[]
[FVKernels]
[mass]
type = PINSFVMassAdvection
variable = pressure
advected_interp_method = ${advected_interp_method}
velocity_interp_method = ${velocity_interp_method}
rho = ${rho}
[]
[u_advection]
type = PINSFVMomentumAdvection
variable = superficial_vel_x
advected_interp_method = ${advected_interp_method}
velocity_interp_method = ${velocity_interp_method}
rho = ${rho}
porosity = porosity
momentum_component = 'x'
[]
[u_viscosity]
type = PINSFVMomentumDiffusion
variable = superficial_vel_x
mu = ${mu}
porosity = porosity
momentum_component = 'x'
[]
[u_pressure]
type = PINSFVMomentumPressure
variable = superficial_vel_x
momentum_component = 'x'
pressure = pressure
porosity = porosity
[]
[v_advection]
type = PINSFVMomentumAdvection
variable = superficial_vel_y
advected_interp_method = ${advected_interp_method}
velocity_interp_method = ${velocity_interp_method}
rho = ${rho}
porosity = porosity
momentum_component = 'y'
[]
[v_viscosity]
type = PINSFVMomentumDiffusion
variable = superficial_vel_y
mu = ${mu}
porosity = porosity
momentum_component = 'y'
[]
[v_pressure]
type = PINSFVMomentumPressure
variable = superficial_vel_y
momentum_component = 'y'
pressure = pressure
porosity = porosity
[]
[energy_advection]
type = PINSFVEnergyAdvection
variable = T_fluid
velocity_interp_method = ${velocity_interp_method}
advected_interp_method = ${advected_interp_method}
[]
[energy_diffusion_1]
type = PINSFVEnergyAnisotropicDiffusion
kappa = 'kappa'
variable = T_fluid
porosity = porosity
block = '1 2'
[]
[energy_diffusion_2]
type = PINSFVEnergyAnisotropicDiffusion
kappa = 'kappa'
variable = T_fluid
porosity = porosity
block = '3'
[]
[energy_convection]
type = PINSFVEnergyAmbientConvection
variable = T_fluid
is_solid = false
T_fluid = T_fluid
T_solid = T_solid
h_solid_fluid = 'h_cv'
[]
[]
[FVBCs]
inactive = 'inlet-T-dirichlet'
[inlet-u]
type = INSFVInletVelocityBC
boundary = 'left'
variable = superficial_vel_x
function = ${u_inlet}
[]
[inlet-v]
type = INSFVInletVelocityBC
boundary = 'left'
variable = superficial_vel_y
function = 0
[]
[inlet-T]
type = FVNeumannBC
variable = T_fluid
value = '${fparse u_inlet * rho * cp * T_inlet}'
boundary = 'left'
[]
[inlet-T-dirichlet]
type = FVDirichletBC
variable = T_fluid
value = '${T_inlet}'
boundary = 'left'
[]
[no-slip-u]
type = INSFVNoSlipWallBC
boundary = 'top'
variable = superficial_vel_x
function = 0
[]
[no-slip-v]
type = INSFVNoSlipWallBC
boundary = 'top'
variable = superficial_vel_y
function = 0
[]
[symmetry-u]
type = PINSFVSymmetryVelocityBC
boundary = 'bottom'
variable = superficial_vel_x
u = superficial_vel_x
v = superficial_vel_y
mu = ${mu}
momentum_component = 'x'
[]
[symmetry-v]
type = PINSFVSymmetryVelocityBC
boundary = 'bottom'
variable = superficial_vel_y
u = superficial_vel_x
v = superficial_vel_y
mu = ${mu}
momentum_component = 'y'
[]
[symmetry-p]
type = INSFVSymmetryPressureBC
boundary = 'bottom'
variable = pressure
[]
[outlet-p]
type = INSFVOutletPressureBC
boundary = 'right'
variable = pressure
function = 0.1
[]
[]
[FunctorMaterials]
[constants]
type = ADGenericFunctorMaterial
prop_names = 'h_cv'
prop_values = '1'
[]
[functor_constants]
type = ADGenericFunctorMaterial
prop_names = 'cp'
prop_values = '${cp}'
[]
[kappa]
type = ADGenericVectorFunctorMaterial
prop_names = 'kappa'
prop_values = '1e-3 1e-2 1e-1'
[]
[ins_fv]
type = INSFVEnthalpyFunctorMaterial
rho = ${rho}
temperature = 'T_fluid'
[]
[]
[Executioner]
type = Steady
solve_type = 'NEWTON'
petsc_options_iname = '-pc_type -pc_factor_shift_type'
petsc_options_value = 'lu NONZERO'
nl_rel_tol = 1e-12
[]
# Some basic Postprocessors to examine the solution
[Postprocessors]
[inlet-p]
type = SideAverageValue
variable = pressure
boundary = 'left'
[]
[outlet-u]
type = SideAverageValue
variable = superficial_vel_x
boundary = 'right'
[]
[outlet-temp]
type = SideAverageValue
variable = T_fluid
boundary = 'right'
[]
[solid-temp]
type = ElementAverageValue
variable = T_solid
[]
[]
[Outputs]
exodus = true
csv = false
[]
(modules/combined/examples/geochem-porous_flow/geotes_weber_tensleep/aquifer_geochemistry.i)
#########################################
# #
# File written by create_input_files.py #
# #
#########################################
# Simulates geochemistry in the aquifer. This input file may be run in standalone fashion but it does not do anything of interest. To simulate something interesting, run the porous_flow.i simulation which couples to this input file using MultiApps.
# This file receives pf_rate_H pf_rate_Cl pf_rate_SO4 pf_rate_HCO3 pf_rate_SiO2aq pf_rate_Al pf_rate_Ca pf_rate_Mg pf_rate_Fe pf_rate_K pf_rate_Na pf_rate_Sr pf_rate_F pf_rate_BOH pf_rate_Br pf_rate_Ba pf_rate_Li pf_rate_NO3 pf_rate_O2aq pf_rate_H2O and temperature as AuxVariables from porous_flow.i
# The pf_rate quantities are kg/s changes of fluid-component mass at each node, but the geochemistry module expects rates-of-changes of moles at every node. Secondly, since this input file considers just 1 litre of aqueous solution at every node, the nodal_void_volume is used to convert pf_rate_* into rate_*_per_1l, which is measured in mol/s/1_litre_of_aqueous_solution.
# This file sends massfrac_H massfrac_Cl massfrac_SO4 massfrac_HCO3 massfrac_SiO2aq massfrac_Al massfrac_Ca massfrac_Mg massfrac_Fe massfrac_K massfrac_Na massfrac_Sr massfrac_F massfrac_BOH massfrac_Br massfrac_Ba massfrac_Li massfrac_NO3 massfrac_O2aq to porous_flow.i. These are computed from the corresponding transported_* quantities.
[UserObjects]
[definition]
type = GeochemicalModelDefinition
database_file = '../../../../geochemistry/database/moose_geochemdb.json'
basis_species = 'H2O H+ Cl- SO4-- HCO3- SiO2(aq) Al+++ Ca++ Mg++ Fe++ K+ Na+ Sr++ F- B(OH)3 Br- Ba++ Li+ NO3- O2(aq)'
equilibrium_minerals = 'Siderite Pyrrhotite Dolomite Illite Anhydrite Calcite Quartz K-feldspar Kaolinite Barite Celestite Fluorite Albite Chalcedony Goethite'
[]
[nodal_void_volume_uo]
type = NodalVoidVolume
porosity = porosity
execute_on = 'initial timestep_end' # initial means this is evaluated properly for the first timestep
[]
[]
[SpatialReactionSolver]
model_definition = definition
geochemistry_reactor_name = reactor
charge_balance_species = 'Cl-'
swap_out_of_basis = 'NO3- H+ Fe++ Ba++ SiO2(aq) Mg++ O2(aq) Al+++ K+ Ca++ HCO3-'
swap_into_basis = ' NH3 Pyrrhotite K-feldspar Barite Quartz Dolomite Siderite Calcite Illite Anhydrite Kaolinite'
# ASSUME that 1 litre of solution contains:
constraint_species = 'H2O Quartz Calcite K-feldspar Siderite Dolomite Anhydrite Pyrrhotite Illite Kaolinite Barite Na+ Cl- SO4-- Li+ B(OH)3 Br- F- Sr++ NH3'
constraint_value = ' 0.99778351 322.177447 12.111108 6.8269499 6.2844304 2.8670301 1.1912027 0.51474767 0.3732507 0.20903322 0.0001865889 1.5876606 1.5059455 0.046792579 0.013110503 0.006663119 0.001238987 0.00032108 0.000159781 0.001937302'
constraint_meaning = 'kg_solvent_water bulk_composition bulk_composition bulk_composition bulk_composition bulk_composition bulk_composition bulk_composition bulk_composition bulk_composition bulk_composition bulk_composition bulk_composition bulk_composition bulk_composition bulk_composition bulk_composition bulk_composition bulk_composition bulk_composition'
constraint_unit = "kg moles moles moles moles moles moles moles moles moles moles moles moles moles moles moles moles moles moles moles"
prevent_precipitation = 'Fluorite Albite Goethite'
initial_temperature = 92
temperature = temperature
source_species_names = 'H+ Cl- SO4-- HCO3- SiO2(aq) Al+++ Ca++ Mg++ Fe++ K+ Na+ Sr++ F- B(OH)3 Br- Ba++ Li+ NO3- O2(aq) H2O'
source_species_rates = ' rate_H_per_1l rate_Cl_per_1l rate_SO4_per_1l rate_HCO3_per_1l rate_SiO2aq_per_1l rate_Al_per_1l rate_Ca_per_1l rate_Mg_per_1l rate_Fe_per_1l rate_K_per_1l rate_Na_per_1l rate_Sr_per_1l rate_F_per_1l rate_BOH_per_1l rate_Br_per_1l rate_Ba_per_1l rate_Li_per_1l rate_NO3_per_1l rate_O2aq_per_1l rate_H2O_per_1l'
ramp_max_ionic_strength_initial = 0 # max_ionic_strength in such a simple problem does not need ramping
execute_console_output_on = '' # only CSV and exodus output for this simulation
add_aux_molal = false # save some memory and reduce variables in output exodus
add_aux_mg_per_kg = false # save some memory and reduce variables in output exodus
add_aux_free_mg = false # save some memory and reduce variables in output exodus
add_aux_activity = false # save some memory and reduce variables in output exodus
add_aux_bulk_moles = false # save some memory and reduce variables in output exodus
adaptive_timestepping = true
[]
[Mesh]
[gen]
type = GeneratedMeshGenerator
dim = 3
xmin = -75
xmax = 75
ymin = 0
ymax = 40
zmin = -25
zmax = 25
nx = 15
ny = 4
nz = 5
[]
[aquifer]
type = ParsedSubdomainMeshGenerator
input = gen
block_id = 1
block_name = aquifer
combinatorial_geometry = 'z >= -5 & z <= 5'
[]
[injection_nodes]
input = aquifer
type = ExtraNodesetGenerator
new_boundary = injection_nodes
coord = '-25 0 -5; -25 0 5'
[]
[production_nodes]
input = injection_nodes
type = ExtraNodesetGenerator
new_boundary = production_nodes
coord = '25 0 -5; 25 0 5'
[]
[]
[GlobalParams]
point = '-25 0 0'
reactor = reactor
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 7.76E6 # 90 days
[TimeStepper]
type = FunctionDT
function = 'min(3E4, max(1E4, 0.2 * t))'
[]
[]
[AuxVariables]
[temperature]
initial_condition = 92.0
[]
[porosity]
initial_condition = 0.1
[]
[nodal_void_volume]
[]
[free_cm3_Kfeldspar] # necessary because of the minus sign in K-feldspar which does not parse correctly in the porosity AuxKernel
[]
[pf_rate_H] # change in H mass (kg/s) at each node provided by the porous-flow simulation
[]
[pf_rate_Cl] # change in Cl mass (kg/s) at each node provided by the porous-flow simulation
[]
[pf_rate_SO4] # change in SO4 mass (kg/s) at each node provided by the porous-flow simulation
[]
[pf_rate_HCO3] # change in HCO3 mass (kg/s) at each node provided by the porous-flow simulation
[]
[pf_rate_SiO2aq] # change in SiO2aq mass (kg/s) at each node provided by the porous-flow simulation
[]
[pf_rate_Al] # change in Al mass (kg/s) at each node provided by the porous-flow simulation
[]
[pf_rate_Ca] # change in Ca mass (kg/s) at each node provided by the porous-flow simulation
[]
[pf_rate_Mg] # change in Mg mass (kg/s) at each node provided by the porous-flow simulation
[]
[pf_rate_Fe] # change in Fe mass (kg/s) at each node provided by the porous-flow simulation
[]
[pf_rate_K] # change in K mass (kg/s) at each node provided by the porous-flow simulation
[]
[pf_rate_Na] # change in Na mass (kg/s) at each node provided by the porous-flow simulation
[]
[pf_rate_Sr] # change in Sr mass (kg/s) at each node provided by the porous-flow simulation
[]
[pf_rate_F] # change in F mass (kg/s) at each node provided by the porous-flow simulation
[]
[pf_rate_BOH] # change in BOH mass (kg/s) at each node provided by the porous-flow simulation
[]
[pf_rate_Br] # change in Br mass (kg/s) at each node provided by the porous-flow simulation
[]
[pf_rate_Ba] # change in Ba mass (kg/s) at each node provided by the porous-flow simulation
[]
[pf_rate_Li] # change in Li mass (kg/s) at each node provided by the porous-flow simulation
[]
[pf_rate_NO3] # change in NO3 mass (kg/s) at each node provided by the porous-flow simulation
[]
[pf_rate_O2aq] # change in O2aq mass (kg/s) at each node provided by the porous-flow simulation
[]
[pf_rate_H2O] # change in H2O mass (kg/s) at each node provided by the porous-flow simulation
[]
[rate_H_per_1l]
[]
[rate_Cl_per_1l]
[]
[rate_SO4_per_1l]
[]
[rate_HCO3_per_1l]
[]
[rate_SiO2aq_per_1l]
[]
[rate_Al_per_1l]
[]
[rate_Ca_per_1l]
[]
[rate_Mg_per_1l]
[]
[rate_Fe_per_1l]
[]
[rate_K_per_1l]
[]
[rate_Na_per_1l]
[]
[rate_Sr_per_1l]
[]
[rate_F_per_1l]
[]
[rate_BOH_per_1l]
[]
[rate_Br_per_1l]
[]
[rate_Ba_per_1l]
[]
[rate_Li_per_1l]
[]
[rate_NO3_per_1l]
[]
[rate_O2aq_per_1l]
[]
[rate_H2O_per_1l]
[]
[transported_H]
[]
[transported_Cl]
[]
[transported_SO4]
[]
[transported_HCO3]
[]
[transported_SiO2aq]
[]
[transported_Al]
[]
[transported_Ca]
[]
[transported_Mg]
[]
[transported_Fe]
[]
[transported_K]
[]
[transported_Na]
[]
[transported_Sr]
[]
[transported_F]
[]
[transported_BOH]
[]
[transported_Br]
[]
[transported_Ba]
[]
[transported_Li]
[]
[transported_NO3]
[]
[transported_O2aq]
[]
[transported_H2O]
[]
[transported_mass]
[]
[massfrac_H]
[]
[massfrac_Cl]
[]
[massfrac_SO4]
[]
[massfrac_HCO3]
[]
[massfrac_SiO2aq]
[]
[massfrac_Al]
[]
[massfrac_Ca]
[]
[massfrac_Mg]
[]
[massfrac_Fe]
[]
[massfrac_K]
[]
[massfrac_Na]
[]
[massfrac_Sr]
[]
[massfrac_F]
[]
[massfrac_BOH]
[]
[massfrac_Br]
[]
[massfrac_Ba]
[]
[massfrac_Li]
[]
[massfrac_NO3]
[]
[massfrac_O2aq]
[]
[massfrac_H2O]
[]
[]
[AuxKernels]
[free_cm3_Kfeldspar]
type = GeochemistryQuantityAux
variable = free_cm3_Kfeldspar
species = 'K-feldspar'
quantity = free_cm3
execute_on = 'timestep_end'
[]
[porosity_auxk]
type = ParsedAux
coupled_variables = 'free_cm3_Siderite free_cm3_Pyrrhotite free_cm3_Dolomite free_cm3_Illite free_cm3_Anhydrite free_cm3_Calcite free_cm3_Quartz free_cm3_Kfeldspar free_cm3_Kaolinite free_cm3_Barite free_cm3_Celestite free_cm3_Fluorite free_cm3_Albite free_cm3_Chalcedony free_cm3_Goethite'
expression = '1000.0 / (1000.0 + free_cm3_Siderite + free_cm3_Pyrrhotite + free_cm3_Dolomite + free_cm3_Illite + free_cm3_Anhydrite + free_cm3_Calcite + free_cm3_Quartz + free_cm3_Kfeldspar + free_cm3_Kaolinite + free_cm3_Barite + free_cm3_Celestite + free_cm3_Fluorite + free_cm3_Albite + free_cm3_Chalcedony + free_cm3_Goethite)'
variable = porosity
execute_on = 'timestep_end'
[]
[nodal_void_volume_auxk]
type = NodalVoidVolumeAux
variable = nodal_void_volume
nodal_void_volume_uo = nodal_void_volume_uo
execute_on = 'initial timestep_end' # initial to ensure it is properly evaluated for the first timestep
[]
[rate_H_per_1l_auxk]
type = ParsedAux
coupled_variables = 'pf_rate_H nodal_void_volume'
variable = rate_H_per_1l
expression = 'pf_rate_H / 1.0079 / nodal_void_volume'
execute_on = 'timestep_end'
[]
[rate_Cl_per_1l_auxk]
type = ParsedAux
coupled_variables = 'pf_rate_Cl nodal_void_volume'
variable = rate_Cl_per_1l
expression = 'pf_rate_Cl / 35.453 / nodal_void_volume'
execute_on = 'timestep_end'
[]
[rate_SO4_per_1l_auxk]
type = ParsedAux
coupled_variables = 'pf_rate_SO4 nodal_void_volume'
variable = rate_SO4_per_1l
expression = 'pf_rate_SO4 / 96.0576 / nodal_void_volume'
execute_on = 'timestep_end'
[]
[rate_HCO3_per_1l_auxk]
type = ParsedAux
coupled_variables = 'pf_rate_HCO3 nodal_void_volume'
variable = rate_HCO3_per_1l
expression = 'pf_rate_HCO3 / 61.0171 / nodal_void_volume'
execute_on = 'timestep_end'
[]
[rate_SiO2aq_per_1l_auxk]
type = ParsedAux
coupled_variables = 'pf_rate_SiO2aq nodal_void_volume'
variable = rate_SiO2aq_per_1l
expression = 'pf_rate_SiO2aq / 60.0843 / nodal_void_volume'
execute_on = 'timestep_end'
[]
[rate_Al_per_1l_auxk]
type = ParsedAux
coupled_variables = 'pf_rate_Al nodal_void_volume'
variable = rate_Al_per_1l
expression = 'pf_rate_Al / 26.9815 / nodal_void_volume'
execute_on = 'timestep_end'
[]
[rate_Ca_per_1l_auxk]
type = ParsedAux
coupled_variables = 'pf_rate_Ca nodal_void_volume'
variable = rate_Ca_per_1l
expression = 'pf_rate_Ca / 40.08 / nodal_void_volume'
execute_on = 'timestep_end'
[]
[rate_Mg_per_1l_auxk]
type = ParsedAux
coupled_variables = 'pf_rate_Mg nodal_void_volume'
variable = rate_Mg_per_1l
expression = 'pf_rate_Mg / 24.305 / nodal_void_volume'
execute_on = 'timestep_end'
[]
[rate_Fe_per_1l_auxk]
type = ParsedAux
coupled_variables = 'pf_rate_Fe nodal_void_volume'
variable = rate_Fe_per_1l
expression = 'pf_rate_Fe / 55.847 / nodal_void_volume'
execute_on = 'timestep_end'
[]
[rate_K_per_1l_auxk]
type = ParsedAux
coupled_variables = 'pf_rate_K nodal_void_volume'
variable = rate_K_per_1l
expression = 'pf_rate_K / 39.0983 / nodal_void_volume'
execute_on = 'timestep_end'
[]
[rate_Na_per_1l_auxk]
type = ParsedAux
coupled_variables = 'pf_rate_Na nodal_void_volume'
variable = rate_Na_per_1l
expression = 'pf_rate_Na / 22.9898 / nodal_void_volume'
execute_on = 'timestep_end'
[]
[rate_Sr_per_1l_auxk]
type = ParsedAux
coupled_variables = 'pf_rate_Sr nodal_void_volume'
variable = rate_Sr_per_1l
expression = 'pf_rate_Sr / 87.62 / nodal_void_volume'
execute_on = 'timestep_end'
[]
[rate_F_per_1l_auxk]
type = ParsedAux
coupled_variables = 'pf_rate_F nodal_void_volume'
variable = rate_F_per_1l
expression = 'pf_rate_F / 18.9984 / nodal_void_volume'
execute_on = 'timestep_end'
[]
[rate_BOH_per_1l_auxk]
type = ParsedAux
coupled_variables = 'pf_rate_BOH nodal_void_volume'
variable = rate_BOH_per_1l
expression = 'pf_rate_BOH / 61.8329 / nodal_void_volume'
execute_on = 'timestep_end'
[]
[rate_Br_per_1l_auxk]
type = ParsedAux
coupled_variables = 'pf_rate_Br nodal_void_volume'
variable = rate_Br_per_1l
expression = 'pf_rate_Br / 79.904 / nodal_void_volume'
execute_on = 'timestep_end'
[]
[rate_Ba_per_1l_auxk]
type = ParsedAux
coupled_variables = 'pf_rate_Ba nodal_void_volume'
variable = rate_Ba_per_1l
expression = 'pf_rate_Ba / 137.33 / nodal_void_volume'
execute_on = 'timestep_end'
[]
[rate_Li_per_1l_auxk]
type = ParsedAux
coupled_variables = 'pf_rate_Li nodal_void_volume'
variable = rate_Li_per_1l
expression = 'pf_rate_Li / 6.941 / nodal_void_volume'
execute_on = 'timestep_end'
[]
[rate_NO3_per_1l_auxk]
type = ParsedAux
coupled_variables = 'pf_rate_NO3 nodal_void_volume'
variable = rate_NO3_per_1l
expression = 'pf_rate_NO3 / 62.0049 / nodal_void_volume'
execute_on = 'timestep_end'
[]
[rate_O2aq_per_1l_auxk]
type = ParsedAux
coupled_variables = 'pf_rate_O2aq nodal_void_volume'
variable = rate_O2aq_per_1l
expression = 'pf_rate_O2aq / 31.9988 / nodal_void_volume'
execute_on = 'timestep_end'
[]
[rate_H2O_per_1l_auxk]
type = ParsedAux
coupled_variables = 'pf_rate_H2O nodal_void_volume'
variable = rate_H2O_per_1l
expression = 'pf_rate_H2O / 18.01801802 / nodal_void_volume'
execute_on = 'timestep_end'
[]
[transported_H_auxk]
type = GeochemistryQuantityAux
variable = transported_H
species = 'H+'
quantity = transported_moles_in_original_basis
execute_on = 'timestep_end'
[]
[transported_Cl_auxk]
type = GeochemistryQuantityAux
variable = transported_Cl
species = 'Cl-'
quantity = transported_moles_in_original_basis
execute_on = 'timestep_end'
[]
[transported_SO4_auxk]
type = GeochemistryQuantityAux
variable = transported_SO4
species = 'SO4--'
quantity = transported_moles_in_original_basis
execute_on = 'timestep_end'
[]
[transported_HCO3_auxk]
type = GeochemistryQuantityAux
variable = transported_HCO3
species = 'HCO3-'
quantity = transported_moles_in_original_basis
execute_on = 'timestep_end'
[]
[transported_SiO2aq_auxk]
type = GeochemistryQuantityAux
variable = transported_SiO2aq
species = 'SiO2(aq)'
quantity = transported_moles_in_original_basis
execute_on = 'timestep_end'
[]
[transported_Al_auxk]
type = GeochemistryQuantityAux
variable = transported_Al
species = 'Al+++'
quantity = transported_moles_in_original_basis
execute_on = 'timestep_end'
[]
[transported_Ca_auxk]
type = GeochemistryQuantityAux
variable = transported_Ca
species = 'Ca++'
quantity = transported_moles_in_original_basis
execute_on = 'timestep_end'
[]
[transported_Mg_auxk]
type = GeochemistryQuantityAux
variable = transported_Mg
species = 'Mg++'
quantity = transported_moles_in_original_basis
execute_on = 'timestep_end'
[]
[transported_Fe_auxk]
type = GeochemistryQuantityAux
variable = transported_Fe
species = 'Fe++'
quantity = transported_moles_in_original_basis
execute_on = 'timestep_end'
[]
[transported_K_auxk]
type = GeochemistryQuantityAux
variable = transported_K
species = 'K+'
quantity = transported_moles_in_original_basis
execute_on = 'timestep_end'
[]
[transported_Na_auxk]
type = GeochemistryQuantityAux
variable = transported_Na
species = 'Na+'
quantity = transported_moles_in_original_basis
execute_on = 'timestep_end'
[]
[transported_Sr_auxk]
type = GeochemistryQuantityAux
variable = transported_Sr
species = 'Sr++'
quantity = transported_moles_in_original_basis
execute_on = 'timestep_end'
[]
[transported_F_auxk]
type = GeochemistryQuantityAux
variable = transported_F
species = 'F-'
quantity = transported_moles_in_original_basis
execute_on = 'timestep_end'
[]
[transported_BOH_auxk]
type = GeochemistryQuantityAux
variable = transported_BOH
species = 'B(OH)3'
quantity = transported_moles_in_original_basis
execute_on = 'timestep_end'
[]
[transported_Br_auxk]
type = GeochemistryQuantityAux
variable = transported_Br
species = 'Br-'
quantity = transported_moles_in_original_basis
execute_on = 'timestep_end'
[]
[transported_Ba_auxk]
type = GeochemistryQuantityAux
variable = transported_Ba
species = 'Ba++'
quantity = transported_moles_in_original_basis
execute_on = 'timestep_end'
[]
[transported_Li_auxk]
type = GeochemistryQuantityAux
variable = transported_Li
species = 'Li+'
quantity = transported_moles_in_original_basis
execute_on = 'timestep_end'
[]
[transported_NO3_auxk]
type = GeochemistryQuantityAux
variable = transported_NO3
species = 'NO3-'
quantity = transported_moles_in_original_basis
execute_on = 'timestep_end'
[]
[transported_O2aq_auxk]
type = GeochemistryQuantityAux
variable = transported_O2aq
species = 'O2(aq)'
quantity = transported_moles_in_original_basis
execute_on = 'timestep_end'
[]
[transported_H2O_auxk]
type = GeochemistryQuantityAux
variable = transported_H2O
species = 'H2O'
quantity = transported_moles_in_original_basis
execute_on = 'timestep_end'
[]
[transported_mass_auxk]
type = ParsedAux
coupled_variables = ' transported_H transported_Cl transported_SO4 transported_HCO3 transported_SiO2aq transported_Al transported_Ca transported_Mg transported_Fe transported_K transported_Na transported_Sr transported_F transported_BOH transported_Br transported_Ba transported_Li transported_NO3 transported_O2aq transported_H2O'
variable = transported_mass
expression = 'transported_H * 1.0079 + transported_Cl * 35.453 + transported_SO4 * 96.0576 + transported_HCO3 * 61.0171 + transported_SiO2aq * 60.0843 + transported_Al * 26.9815 + transported_Ca * 40.08 + transported_Mg * 24.305 + transported_Fe * 55.847 + transported_K * 39.0983 + transported_Na * 22.9898 + transported_Sr * 87.62 + transported_F * 18.9984 + transported_BOH * 61.8329 + transported_Br * 79.904 + transported_Ba * 137.33 + transported_Li * 6.941 + transported_NO3 * 62.0049 + transported_O2aq * 31.9988 + transported_H2O * 18.01801802'
execute_on = 'timestep_end'
[]
[massfrac_H_auxk]
type = ParsedAux
coupled_variables = 'transported_H transported_mass'
variable = massfrac_H
expression = 'transported_H * 1.0079 / transported_mass'
execute_on = 'timestep_end'
[]
[massfrac_Cl_auxk]
type = ParsedAux
coupled_variables = 'transported_Cl transported_mass'
variable = massfrac_Cl
expression = 'transported_Cl * 35.453 / transported_mass'
execute_on = 'timestep_end'
[]
[massfrac_SO4_auxk]
type = ParsedAux
coupled_variables = 'transported_SO4 transported_mass'
variable = massfrac_SO4
expression = 'transported_SO4 * 96.0576 / transported_mass'
execute_on = 'timestep_end'
[]
[massfrac_HCO3_auxk]
type = ParsedAux
coupled_variables = 'transported_HCO3 transported_mass'
variable = massfrac_HCO3
expression = 'transported_HCO3 * 61.0171 / transported_mass'
execute_on = 'timestep_end'
[]
[massfrac_SiO2aq_auxk]
type = ParsedAux
coupled_variables = 'transported_SiO2aq transported_mass'
variable = massfrac_SiO2aq
expression = 'transported_SiO2aq * 60.0843 / transported_mass'
execute_on = 'timestep_end'
[]
[massfrac_Al_auxk]
type = ParsedAux
coupled_variables = 'transported_Al transported_mass'
variable = massfrac_Al
expression = 'transported_Al * 26.9815 / transported_mass'
execute_on = 'timestep_end'
[]
[massfrac_Ca_auxk]
type = ParsedAux
coupled_variables = 'transported_Ca transported_mass'
variable = massfrac_Ca
expression = 'transported_Ca * 40.08 / transported_mass'
execute_on = 'timestep_end'
[]
[massfrac_Mg_auxk]
type = ParsedAux
coupled_variables = 'transported_Mg transported_mass'
variable = massfrac_Mg
expression = 'transported_Mg * 24.305 / transported_mass'
execute_on = 'timestep_end'
[]
[massfrac_Fe_auxk]
type = ParsedAux
coupled_variables = 'transported_Fe transported_mass'
variable = massfrac_Fe
expression = 'transported_Fe * 55.847 / transported_mass'
execute_on = 'timestep_end'
[]
[massfrac_K_auxk]
type = ParsedAux
coupled_variables = 'transported_K transported_mass'
variable = massfrac_K
expression = 'transported_K * 39.0983 / transported_mass'
execute_on = 'timestep_end'
[]
[massfrac_Na_auxk]
type = ParsedAux
coupled_variables = 'transported_Na transported_mass'
variable = massfrac_Na
expression = 'transported_Na * 22.9898 / transported_mass'
execute_on = 'timestep_end'
[]
[massfrac_Sr_auxk]
type = ParsedAux
coupled_variables = 'transported_Sr transported_mass'
variable = massfrac_Sr
expression = 'transported_Sr * 87.62 / transported_mass'
execute_on = 'timestep_end'
[]
[massfrac_F_auxk]
type = ParsedAux
coupled_variables = 'transported_F transported_mass'
variable = massfrac_F
expression = 'transported_F * 18.9984 / transported_mass'
execute_on = 'timestep_end'
[]
[massfrac_BOH_auxk]
type = ParsedAux
coupled_variables = 'transported_BOH transported_mass'
variable = massfrac_BOH
expression = 'transported_BOH * 61.8329 / transported_mass'
execute_on = 'timestep_end'
[]
[massfrac_Br_auxk]
type = ParsedAux
coupled_variables = 'transported_Br transported_mass'
variable = massfrac_Br
expression = 'transported_Br * 79.904 / transported_mass'
execute_on = 'timestep_end'
[]
[massfrac_Ba_auxk]
type = ParsedAux
coupled_variables = 'transported_Ba transported_mass'
variable = massfrac_Ba
expression = 'transported_Ba * 137.33 / transported_mass'
execute_on = 'timestep_end'
[]
[massfrac_Li_auxk]
type = ParsedAux
coupled_variables = 'transported_Li transported_mass'
variable = massfrac_Li
expression = 'transported_Li * 6.941 / transported_mass'
execute_on = 'timestep_end'
[]
[massfrac_NO3_auxk]
type = ParsedAux
coupled_variables = 'transported_NO3 transported_mass'
variable = massfrac_NO3
expression = 'transported_NO3 * 62.0049 / transported_mass'
execute_on = 'timestep_end'
[]
[massfrac_O2aq_auxk]
type = ParsedAux
coupled_variables = 'transported_O2aq transported_mass'
variable = massfrac_O2aq
expression = 'transported_O2aq * 31.9988 / transported_mass'
execute_on = 'timestep_end'
[]
[massfrac_H2O_auxk]
type = ParsedAux
coupled_variables = 'transported_H2O transported_mass'
variable = massfrac_H2O
expression = 'transported_H2O * 18.01801802 / transported_mass'
execute_on = 'timestep_end'
[]
[]
[Postprocessors]
[memory]
type = MemoryUsage
outputs = 'console'
[]
[porosity]
type = PointValue
variable = porosity
[]
[solution_temperature]
type = PointValue
variable = solution_temperature
[]
[massfrac_H]
type = PointValue
variable = massfrac_H
[]
[massfrac_Cl]
type = PointValue
variable = massfrac_Cl
[]
[massfrac_SO4]
type = PointValue
variable = massfrac_SO4
[]
[massfrac_HCO3]
type = PointValue
variable = massfrac_HCO3
[]
[massfrac_SiO2aq]
type = PointValue
variable = massfrac_SiO2aq
[]
[massfrac_Al]
type = PointValue
variable = massfrac_Al
[]
[massfrac_Ca]
type = PointValue
variable = massfrac_Ca
[]
[massfrac_Mg]
type = PointValue
variable = massfrac_Mg
[]
[massfrac_Fe]
type = PointValue
variable = massfrac_Fe
[]
[massfrac_K]
type = PointValue
variable = massfrac_K
[]
[massfrac_Na]
type = PointValue
variable = massfrac_Na
[]
[massfrac_Sr]
type = PointValue
variable = massfrac_Sr
[]
[massfrac_F]
type = PointValue
variable = massfrac_F
[]
[massfrac_BOH]
type = PointValue
variable = massfrac_BOH
[]
[massfrac_Br]
type = PointValue
variable = massfrac_Br
[]
[massfrac_Ba]
type = PointValue
variable = massfrac_Ba
[]
[massfrac_Li]
type = PointValue
variable = massfrac_Li
[]
[massfrac_NO3]
type = PointValue
variable = massfrac_NO3
[]
[massfrac_O2aq]
type = PointValue
variable = massfrac_O2aq
[]
[massfrac_H2O]
type = PointValue
variable = massfrac_H2O
[]
[free_cm3_Siderite]
type = PointValue
variable = free_cm3_Siderite
[]
[free_cm3_Pyrrhotite]
type = PointValue
variable = free_cm3_Pyrrhotite
[]
[free_cm3_Dolomite]
type = PointValue
variable = free_cm3_Dolomite
[]
[free_cm3_Illite]
type = PointValue
variable = free_cm3_Illite
[]
[free_cm3_Anhydrite]
type = PointValue
variable = free_cm3_Anhydrite
[]
[free_cm3_Calcite]
type = PointValue
variable = free_cm3_Calcite
[]
[free_cm3_Quartz]
type = PointValue
variable = free_cm3_Quartz
[]
[free_cm3_K-feldspar]
type = PointValue
variable = free_cm3_K-feldspar
[]
[free_cm3_Kaolinite]
type = PointValue
variable = free_cm3_Kaolinite
[]
[free_cm3_Barite]
type = PointValue
variable = free_cm3_Barite
[]
[free_cm3_Celestite]
type = PointValue
variable = free_cm3_Celestite
[]
[free_cm3_Fluorite]
type = PointValue
variable = free_cm3_Fluorite
[]
[free_cm3_Albite]
type = PointValue
variable = free_cm3_Albite
[]
[free_cm3_Chalcedony]
type = PointValue
variable = free_cm3_Chalcedony
[]
[free_cm3_Goethite]
type = PointValue
variable = free_cm3_Goethite
[]
[]
[Outputs]
exodus = true
csv = true
[]
(modules/stochastic_tools/test/tests/transfers/sampler_transfer_vector/sub.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 1
nx = 10
[]
# Give the far left element a block so that we can
# grab its value
[left_elem_block]
type = ParsedSubdomainMeshGenerator
input = gmg
combinatorial_geometry = 'x < 0.1'
block_id = 1
[]
[]
[Variables]
[u]
[]
[]
[AuxVariables]
[prop_a]
family = MONOMIAL
order = CONSTANT
[]
[prop_b]
family = MONOMIAL
order = CONSTANT
[]
[]
[AuxKernels]
[prop_a]
type = MaterialRealAux
variable = prop_a
property = prop_a
[]
[prop_b]
type = MaterialRealAux
variable = prop_b
property = prop_b
[]
[]
[Kernels]
[diff]
type = Diffusion
variable = u
[]
[time]
type = TimeDerivative
variable = u
[]
[]
[BCs]
[left]
type = DirichletBC
variable = u
boundary = left
value = 0
[]
[right]
type = DirichletBC
variable = u
boundary = right
value = 1
[]
[]
[Executioner]
type = Transient
num_steps = 5
dt = 0.01
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Materials]
[mat]
type = GenericConstantMaterial
prop_names = 'prop_a prop_b'
prop_values = '100 200'
[]
[mat2]
type = GenericConstantMaterial
prop_names = 'prop_c prop_d prop_e'
prop_values = '300 400 500'
[]
[]
[Controls]
[stochastic]
type = SamplerReceiver
[]
[]
[Postprocessors]
[left_bc]
type = PointValue
point = '0 0 0'
variable = u
[]
[right_bc]
type = PointValue
point = '1 0 0'
variable = u
[]
[prop_a]
type = ElementAverageValue
variable = prop_a
block = 1
[]
[prop_b]
type = ElementAverageValue
variable = prop_b
block = 1
[]
[]
[Outputs]
csv = true
[]
(test/tests/transfers/general_field/nearest_node/boundary/sub.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 3
nx = 5
ny = 5
nz = 5
xmax = 0.3
ymax = 0.3
zmax = 0.3
[]
[add_block]
type = ParsedSubdomainMeshGenerator
input = gmg
combinatorial_geometry = 'x > 0.22 & y < 0.23'
block_id = 1
[]
[add_internal_sideset]
type = SideSetsBetweenSubdomainsGenerator
input = add_block
primary_block = 0
paired_block = 1
new_boundary = internal
[]
[]
[AuxVariables]
[from_main]
initial_condition = -1
[]
[from_main_elem]
order = CONSTANT
family = MONOMIAL
initial_condition = -1
[]
[to_main]
[InitialCondition]
type = FunctionIC
function = '3 + 2*x*x + 3*y*y*y'
[]
[]
[to_main_elem]
order = CONSTANT
family = MONOMIAL
[InitialCondition]
type = FunctionIC
function = '4 + 2*x*x + 3*y*y*y'
[]
[]
[]
[Executioner]
type = Transient
num_steps = 1
[]
[Problem]
solve = false
[]
[Outputs]
[out]
type = Exodus
hide = 'to_main to_main_elem'
overwrite = true
[]
[]
(test/tests/meshgenerators/parsed_generate_sideset/parsed_generate_sideset.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 3
nx = 3
ny = 3
nz = 3
xmax = 3
ymax = 3
zmax = 3
[]
[subdomains]
type = ParsedSubdomainMeshGenerator
input = gmg
combinatorial_geometry = 'x < 1 & y > 1 & y < 2'
block_id = 1
[]
[sideset]
type = ParsedGenerateSideset
input = subdomains
combinatorial_geometry = 'z < 1'
included_subdomains = '1'
normal = '1 0 0'
new_sideset_name = interior
[]
[]
[Outputs]
exodus = true
[]
(test/tests/transfers/general_field/user_object/subdomain/main.i)
# Base input for testing transfers. It has the following complexities:
# - more than one subapp
# - transfers both from and to the subapps
# - both nodal and elemental variables
# - subapp meshes are not aligned with the main app
# Tests derived from this input may add complexities through command line arguments
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 5
ny = 5
[]
[add_block]
type = ParsedSubdomainMeshGenerator
input = gmg
combinatorial_geometry = 'x < 0.6 & y < 0.5'
block_id = 1
[]
[]
[AuxVariables]
[from_sub]
initial_condition = -1
[]
[from_sub_elem]
order = CONSTANT
family = MONOMIAL
initial_condition = -1
[]
[to_sub]
[InitialCondition]
type = FunctionIC
function = '1 + 2*x*x + 3*y*y*y'
[]
[]
[to_sub_elem]
order = CONSTANT
family = MONOMIAL
[InitialCondition]
type = FunctionIC
function = '2 + 2*x*x + 3*y*y*y'
[]
[]
[]
[UserObjects]
[to_sub]
type = LayeredAverage
direction = x
num_layers = 10
variable = to_sub
[]
[to_sub_elem]
type = LayeredAverage
direction = x
num_layers = 10
variable = to_sub_elem
[]
[]
[Executioner]
type = Transient
num_steps = 1
[]
[Problem]
solve = false
[]
[Outputs]
[out]
type = Exodus
hide = 'to_sub to_sub_elem'
[]
execute_on = 'TIMESTEP_END'
[]
[MultiApps]
[sub]
# 1 on corner, one in the center and one close to a corner
# Offsets are added to make sure there are no equidistant nodes / transfer indetermination
positions = '0 0 0 0.41111 0.28111 0 0.7232323 0.12323 0'
type = TransientMultiApp
app_type = MooseTestApp
input_files = sub.i
execute_on = timestep_end
output_in_position = true
[]
[]
[Transfers]
[to_sub]
type = MultiAppGeneralFieldUserObjectTransfer
to_multi_app = sub
source_user_object = to_sub
variable = from_main
from_blocks = 1
to_blocks = 1
extrapolation_constant = -1
[]
[to_sub_elem]
type = MultiAppGeneralFieldUserObjectTransfer
to_multi_app = sub
source_user_object = to_sub_elem
variable = from_main_elem
from_blocks = 1
to_blocks = 1
extrapolation_constant = -1
[]
[from_sub]
type = MultiAppGeneralFieldUserObjectTransfer
from_multi_app = sub
source_user_object = to_main
variable = from_sub
from_blocks = 1
to_blocks = 1
extrapolation_constant = -1
[]
[from_sub_elem]
type = MultiAppGeneralFieldUserObjectTransfer
from_multi_app = sub
source_user_object = to_main_elem
variable = from_sub_elem
from_blocks = 1
to_blocks = 1
extrapolation_constant = -1
[]
[]
(modules/navier_stokes/test/tests/finite_volume/ins/pump/pump_as_volume_force_loop_force_corrected.i)
mu = 1.0
rho = 1.0
[Mesh]
[gen]
type = CartesianMeshGenerator
dim = 2
dx = '0.1 0.8 0.1'
dy = '0.1 0.8 0.1'
ix = '5 20 5'
iy = '5 20 5'
subdomain_id = '1 1 1
1 2 1
1 1 1'
[]
[delete_internal_part]
type = BlockDeletionGenerator
input = gen
block = '2'
new_boundary = 'wall-internal'
[]
[lump_bdries_to_wall]
type = RenameBoundaryGenerator
input = delete_internal_part
old_boundary = 'bottom right top left'
new_boundary = 'wall-external wall-external wall-external wall-external'
[]
[pump_domain]
type = ParsedSubdomainMeshGenerator
input = lump_bdries_to_wall
combinatorial_geometry = 'x > 0.3 & x < 0.7 & y > 0.5'
block_id = '3'
[]
[rename_blocks]
type = RenameBlockGenerator
input = pump_domain
old_block = '1 3'
new_block = 'pipe pump'
[]
[side_pump]
type = ParsedGenerateSideset
input = rename_blocks
included_subdomains = 'pump'
included_neighbors = 'pipe'
new_sideset_name = 'pump_side'
normal = '1 0 0'
combinatorial_geometry = 'x > 0.35'
[]
[]
[GlobalParams]
velocity_interp_method = 'rc'
advected_interp_method = 'upwind'
rhie_chow_user_object = 'rc'
[]
[Problem]
material_coverage_check = False
[]
[UserObjects]
[rc]
type = INSFVRhieChowInterpolator
u = vel_x
v = vel_y
pressure = pressure
correct_volumetric_force = true
volumetric_force_functors = 'pump_force'
volume_force_correction_method = 'force-consistent'
[]
[]
[Variables]
[vel_x]
type = INSFVVelocityVariable
initial_condition = 1
[]
[vel_y]
type = INSFVVelocityVariable
initial_condition = 1
[]
[pressure]
type = INSFVPressureVariable
[]
[lambda]
family = SCALAR
order = FIRST
[]
[]
[AuxVariables]
[U]
order = CONSTANT
family = MONOMIAL
fv = true
[]
[]
[AuxKernels]
[mag]
type = VectorMagnitudeAux
variable = U
x = vel_x
y = vel_y
[]
[]
[FVKernels]
[mass]
type = INSFVMassAdvection
variable = pressure
rho = ${rho}
[]
[mean_zero_pressure]
type = FVIntegralValueConstraint
variable = pressure
lambda = lambda
phi0 = 0.0
[]
[u_advection]
type = INSFVMomentumAdvection
variable = vel_x
rho = ${rho}
momentum_component = 'x'
[]
[u_viscosity]
type = INSFVMomentumDiffusion
variable = vel_x
mu = ${mu}
momentum_component = 'x'
[]
[u_pressure]
type = INSFVMomentumPressure
variable = vel_x
momentum_component = 'x'
pressure = pressure
[]
[u_pump]
type = INSFVBodyForce
variable = vel_x
momentum_component = 'x'
functor = 'pump_force'
block = 'pump'
[]
[v_advection]
type = INSFVMomentumAdvection
variable = vel_y
rho = ${rho}
momentum_component = 'y'
[]
[v_viscosity]
type = INSFVMomentumDiffusion
variable = vel_y
mu = ${mu}
momentum_component = 'y'
[]
[v_pressure]
type = INSFVMomentumPressure
variable = vel_y
momentum_component = 'y'
pressure = pressure
[]
[]
[FVBCs]
[walls-u]
type = INSFVNoSlipWallBC
boundary = 'wall-internal wall-external'
variable = vel_x
function = '0'
[]
[walls-v]
type = INSFVNoSlipWallBC
boundary = 'wall-internal wall-external'
variable = vel_y
function = '0'
[]
[]
[FunctorMaterials]
[pump_force]
type = PiecewiseByBlockFunctorMaterial
prop_name = 'pump_force'
subdomain_to_prop_value = 'pump 1000.0
pipe 0.0'
[]
[]
[Postprocessors]
[flow_rate]
type = Receiver
default = 1.0
[]
[flow_rate_to_pipe]
type = VolumetricFlowRate
advected_quantity = ${rho}
boundary = 'pump_side'
vel_x = 'vel_x'
vel_y = 'vel_y'
[]
[maximum_speed]
type = ADElementExtremeFunctorValue
functor = vel_x
value_type = max
[]
[]
[Executioner]
type = Steady
solve_type = 'NEWTON'
petsc_options_iname = '-pc_type -pc_factor_shift_type'
petsc_options_value = 'lu NONZERO'
nl_rel_tol = 1e-12
[]
[Outputs]
exodus = false
[out]
type = CSV
execute_on = FINAL
show = 'flow_rate_to_pipe maximum_speed'
[]
[]
(test/tests/fvkernels/mms/harmonic_interpolation/diffusion.i)
d1 = 1
d2 = 10
[Mesh]
[gen_mesh]
type = GeneratedMeshGenerator
dim = 2
nx = 2
ny = 2
elem_type = TRI3
[]
[subdomain]
type = ParsedSubdomainMeshGenerator
input = gen_mesh
combinatorial_geometry = 'y > 0.5'
block_id = 1
[]
[]
[Variables]
[v]
type = MooseVariableFVReal
[]
[]
[FVKernels]
[diff]
type = FVDiffusion
variable = v
coeff = 'diff_coeff'
coeff_interp_method = average
[]
[body_v]
type = FVBodyForce
variable = v
function = 'forcing'
[]
[]
[FVBCs]
[exact]
type = FVFunctionDirichletBC
boundary = 'left right top bottom'
function = 'exact'
variable = v
[]
[]
[Functions]
[exact]
type = ParsedFunction
expression = 'if (y < 0.5, 1 + x + 3*y*y*y, (11*d2-3*d1)/ (8*d2) + x + 3*d1/d2*y*y*y)'
symbol_names = 'd1 d2'
symbol_values = '${d1} ${d2}'
[]
[forcing]
type = ParsedFunction
expression = '-d1*18*y'
symbol_names = 'd1'
symbol_values = '${d1}'
[]
[]
[Materials]
[diff_coeff]
type = ADPiecewiseByBlockFunctorMaterial
prop_name = 'diff_coeff'
subdomain_to_prop_value = '0 ${d1}
1 ${d2}'
[]
[]
[Executioner]
type = Steady
solve_type = 'NEWTON'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
csv = true
exodus = true
[]
[Postprocessors]
[error]
type = ElementL2Error
variable = v
function = exact
outputs = 'console csv'
[]
[h]
type = AverageElementSize
outputs = 'console csv'
[]
[]
(modules/stochastic_tools/examples/surrogates/combined/trans_diff_2d/trans_diff_sub.i)
[Functions]
[src_func]
type = ParsedFunction
expression = "1000*sin(f*t)"
symbol_names = 'f'
symbol_values = '20'
[]
[]
[Mesh]
[msh]
type = GeneratedMeshGenerator
dim = 2
nx = 100
xmin = -0.5
xmax = 0.5
ny = 100
ymin = -0.5
ymax = 0.5
[]
[source_domain]
type = ParsedSubdomainMeshGenerator
input = msh
combinatorial_geometry = '(x<0.1 & x>-0.1) & (y<0.1 & y>-0.1)'
block_id=1
[]
[]
[Variables]
[T]
initial_condition = 300
[]
[]
[Kernels]
[diffusion]
type = MatDiffusion
variable = T
diffusivity = diff_coeff
[]
[source]
type = BodyForce
variable = T
function = src_func
block = 1
[]
[time_deriv]
type = TimeDerivative
variable = T
[]
[]
[Materials]
[diff_coeff]
type = ParsedMaterial
property_name = diff_coeff
coupled_variables = 'T'
constant_names = 'C'
constant_expressions = 0.02
expression = 'C * pow(300/T, 2)'
[]
[]
[BCs]
[neumann_all]
type = NeumannBC
variable = T
boundary = 'left right top bottom'
value = 0
[]
[]
[Executioner]
type = Transient
num_steps = 100
dt = 0.01
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
nl_rel_tol = 1e-6
l_abs_tol = 1e-6
timestep_tolerance = 1e-6
[]
[Postprocessors]
[max]
type = NodalExtremeValue
variable = T
[]
[min]
type = NodalExtremeValue
variable = T
value_type = min
[]
[time_max]
type = TimeExtremeValue
postprocessor = max
[]
[time_min]
type = TimeExtremeValue
postprocessor = min
value_type = min
[]
[]
(modules/navier_stokes/test/tests/finite_volume/ins/pump/pump_as_volume_force_loop_pressure_corrected.i)
mu = 1.0
rho = 1.0
[Mesh]
[gen]
type = CartesianMeshGenerator
dim = 2
dx = '0.1 0.8 0.1'
dy = '0.1 0.8 0.1'
ix = '5 20 5'
iy = '5 20 5'
subdomain_id = '1 1 1
1 2 1
1 1 1'
[]
[delete_internal_part]
type = BlockDeletionGenerator
input = gen
block = '2'
new_boundary = 'wall-internal'
[]
[lump_bdries_to_wall]
type = RenameBoundaryGenerator
input = delete_internal_part
old_boundary = 'bottom right top left'
new_boundary = 'wall-external wall-external wall-external wall-external'
[]
[pump_domain]
type = ParsedSubdomainMeshGenerator
input = lump_bdries_to_wall
combinatorial_geometry = 'x > 0.3 & x < 0.7 & y > 0.5'
block_id = '3'
[]
[rename_blocks]
type = RenameBlockGenerator
input = pump_domain
old_block = '1 3'
new_block = 'pipe pump'
[]
[side_pump]
type = ParsedGenerateSideset
input = rename_blocks
included_subdomains = 'pump'
included_neighbors = 'pipe'
new_sideset_name = 'pump_side'
normal = '1 0 0'
combinatorial_geometry = 'x > 0.35'
[]
[]
[GlobalParams]
velocity_interp_method = 'rc'
advected_interp_method = 'upwind'
rhie_chow_user_object = 'rc'
[]
[Problem]
material_coverage_check = False
[]
[UserObjects]
[rc]
type = INSFVRhieChowInterpolator
u = vel_x
v = vel_y
pressure = pressure
correct_volumetric_force = true
volumetric_force_functors = 'pump_force'
volume_force_correction_method = 'pressure-consistent'
[]
[]
[Variables]
[vel_x]
type = INSFVVelocityVariable
initial_condition = 1
[]
[vel_y]
type = INSFVVelocityVariable
initial_condition = 1
[]
[pressure]
type = INSFVPressureVariable
[]
[lambda]
family = SCALAR
order = FIRST
[]
[]
[AuxVariables]
[U]
order = CONSTANT
family = MONOMIAL
fv = true
[]
[]
[AuxKernels]
[mag]
type = VectorMagnitudeAux
variable = U
x = vel_x
y = vel_y
[]
[]
[FVKernels]
[mass]
type = INSFVMassAdvection
variable = pressure
rho = ${rho}
[]
[mean_zero_pressure]
type = FVIntegralValueConstraint
variable = pressure
lambda = lambda
phi0 = 0.0
[]
[u_advection]
type = INSFVMomentumAdvection
variable = vel_x
rho = ${rho}
momentum_component = 'x'
[]
[u_viscosity]
type = INSFVMomentumDiffusion
variable = vel_x
mu = ${mu}
momentum_component = 'x'
[]
[u_pressure]
type = INSFVMomentumPressure
variable = vel_x
momentum_component = 'x'
pressure = pressure
[]
[u_pump]
type = INSFVBodyForce
variable = vel_x
momentum_component = 'x'
functor = 'pump_force'
block = 'pump'
[]
[v_advection]
type = INSFVMomentumAdvection
variable = vel_y
rho = ${rho}
momentum_component = 'y'
[]
[v_viscosity]
type = INSFVMomentumDiffusion
variable = vel_y
mu = ${mu}
momentum_component = 'y'
[]
[v_pressure]
type = INSFVMomentumPressure
variable = vel_y
momentum_component = 'y'
pressure = pressure
[]
[]
[FVBCs]
[walls-u]
type = INSFVNoSlipWallBC
boundary = 'wall-internal wall-external'
variable = vel_x
function = '0'
[]
[walls-v]
type = INSFVNoSlipWallBC
boundary = 'wall-internal wall-external'
variable = vel_y
function = '0'
[]
[]
[FunctorMaterials]
[pump_force]
type = PiecewiseByBlockFunctorMaterial
prop_name = 'pump_force'
subdomain_to_prop_value = 'pump 1000.0
pipe 0.0'
[]
[]
[Postprocessors]
[flow_rate]
type = Receiver
default = 1.0
[]
[flow_rate_to_pipe]
type = VolumetricFlowRate
advected_quantity = ${rho}
boundary = 'pump_side'
vel_x = 'vel_x'
vel_y = 'vel_y'
[]
[maximum_speed]
type = ADElementExtremeFunctorValue
functor = vel_x
value_type = max
[]
[]
[Executioner]
type = Steady
solve_type = 'NEWTON'
petsc_options_iname = '-pc_type -pc_factor_shift_type'
petsc_options_value = 'lu NONZERO'
nl_rel_tol = 1e-12
[]
[Outputs]
exodus = false
[out]
type = CSV
execute_on = FINAL
show = 'flow_rate_to_pipe maximum_speed'
[]
[]
(test/tests/meshgenerators/check_duplicate_subdomain_names/check_duplicate_subdomain_names.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 10
ny = 10
xmax = 1
ymax = 1
uniform_refine = 2
[]
[subdomains]
type = ParsedSubdomainMeshGenerator
input = gmg
combinatorial_geometry = 'x > 0.1 & x < 0.9 & y > 0.1 & y < 0.9'
block_id = 1
block_name = 'A'
[]
[subdomains2]
type = ParsedSubdomainMeshGenerator
combinatorial_geometry = 'x < 0.5 & y < 0.5'
excluded_subdomain = '0'
block_id = 2
input = subdomains
block_name = 'A'
[]
[]
(modules/navier_stokes/test/tests/finite_volume/ins/action/restart-block-restriction/ns-restart-steady.i)
[Mesh]
[gen]
type = GeneratedMeshGenerator
dim = 2
xmin = 0
xmax = 4
ymin = -1
ymax = 1
nx = 4
ny = 2
[]
[right]
type = ParsedSubdomainMeshGenerator
input = gen
combinatorial_geometry = 'x > 2'
block_id = 1
[]
[left]
type = ParsedSubdomainMeshGenerator
input = right
combinatorial_geometry = 'x < 2'
block_id = 2
[]
[]
[Modules]
[NavierStokesFV]
compressibility = 'incompressible'
add_energy_equation = true
density = 1
dynamic_viscosity = 1
thermal_conductivity = 1e-3
specific_heat = 1
initial_velocity = '1 1 0'
initial_pressure = 0.0
initial_temperature = 0.0
inlet_boundaries = 'left'
momentum_inlet_types = 'fixed-velocity'
momentum_inlet_function = '1 0'
energy_inlet_types = 'fixed-temperature'
energy_inlet_function = '1'
wall_boundaries = 'top bottom'
momentum_wall_types = 'noslip noslip'
energy_wall_types = 'heatflux heatflux'
energy_wall_function = '0 0'
outlet_boundaries = 'right'
momentum_outlet_types = 'fixed-pressure'
pressure_function = '0'
ambient_convection_alpha = 1
ambient_temperature = '100'
[]
[]
[Executioner]
type = Steady
solve_type = 'NEWTON'
petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_pc_type -sub_pc_factor_shift_type'
petsc_options_value = 'asm 100 lu NONZERO'
line_search = 'none'
nl_rel_tol = 1e-12
[]
[Outputs]
exodus = true
[]
(modules/navier_stokes/test/tests/finite_volume/ins/action/errors/2d-rc-error-action.i)
mu=1
rho=1
k=1e-3
cp=1
alpha=1
[Mesh]
[gen]
type = GeneratedMeshGenerator
dim = 2
xmin = 0
xmax = 5
ymin = -1
ymax = 1
nx = 10
ny = 4
[]
[right]
type = ParsedSubdomainMeshGenerator
input = gen
combinatorial_geometry = 'x > 2.5'
block_id = 1
[]
[left]
type = ParsedSubdomainMeshGenerator
input = right
combinatorial_geometry = 'x < 2.5'
block_id = 2
[]
[]
[Variables]
inactive = 'vel_x vel_y pressure T_fluid scalar'
[vel_x]
type = 'INSFVVelocityVariable'
initial_condition = 1
block=1
[]
[vel_y]
type = 'INSFVVelocityVariable'
initial_condition = 1
block=1
[]
[pressure]
type = 'INSFVPressureVariable'
initial_condition = 0
block=1
[]
[T_fluid]
type = 'INSFVEnergyVariable'
initial_condition = 0
[]
[scalar]
type = MooseVariableFVReal
initial_condition = 0
[]
[]
[Modules]
[NavierStokesFV]
compressibility = 'incompressible'
porous_medium_treatment = false
add_energy_equation = true
add_scalar_equation = true
passive_scalar_names = 'scalar'
density = 'rho'
dynamic_viscosity = 'mu'
thermal_conductivity = 'k'
specific_heat = 'cp'
passive_scalar_diffusivity = 1e-3
passive_scalar_source = 0.1
initial_velocity = '1 1 0'
initial_pressure = 0.0
initial_temperature = 0.0
inlet_boundaries = 'left'
momentum_inlet_types = 'fixed-velocity'
momentum_inlet_function = '1 0'
energy_inlet_types = 'fixed-temperature'
energy_inlet_function = '1'
passive_scalar_inlet_types = 'fixed-value'
passive_scalar_inlet_function = '1'
wall_boundaries = 'top bottom'
momentum_wall_types = 'noslip noslip'
energy_wall_types = 'heatflux heatflux'
energy_wall_function = '0 0'
outlet_boundaries = 'right'
momentum_outlet_types = 'fixed-pressure'
pressure_function = '0'
ambient_convection_alpha = 'alpha'
ambient_temperature = '100'
friction_blocks = '1; 2'
friction_types = 'darcy; darcy'
friction_coeffs = '1.0; 1.0'
[]
[]
[FunctorMaterials]
[const_functor]
type = ADGenericFunctorMaterial
prop_names = 'cp k rho mu alpha'
prop_values = '${cp} ${k} ${rho} ${mu} ${alpha}'
[]
[kappa]
type = ADGenericVectorFunctorMaterial
prop_names = 'kappa'
prop_values = '1 1 1'
[]
[]
[Postprocessors]
[temp]
type = ElementAverageValue
variable = T_fluid
[]
[]
[Executioner]
type = Steady
solve_type = 'NEWTON'
petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_pc_type -sub_pc_factor_shift_type'
petsc_options_value = 'asm 100 lu NONZERO'
line_search = 'none'
nl_rel_tol = 1e-12
[]
(test/tests/meshgenerators/nodesets_from_sidesets_generator/from_sides.i)
[Mesh]
construct_node_list_from_side_list = false
[gmg]
type = GeneratedMeshGenerator
dim = 3
nx = 3
ny = 3
nz = 3
xmax = 3
ymax = 3
zmax = 3
[]
[subdomains]
type = ParsedSubdomainMeshGenerator
input = gmg
combinatorial_geometry = 'x < 1 & y > 1 & y < 2'
block_id = 1
[]
[sideset]
type = ParsedGenerateSideset
input = subdomains
combinatorial_geometry = 'z < 1'
included_subdomains = '1'
normal = '1 0 0'
new_sideset_name = interior
[]
[add_nodesets]
type = NodeSetsFromSideSetsGenerator
input = sideset
[]
[]
(modules/porous_flow/examples/ates/ates.i)
# Simulation designed to assess the recovery efficiency of a single-well ATES system
# Using KT stabilisation
# Boundary conditions: fixed porepressure and temperature at top, bottom and far end of model.
#####################################
flux_limiter = minmod # minmod, vanleer, mc, superbee, none
# depth of top of aquifer (m)
depth = 400
inject_fluid_mass = 1E8 # kg
produce_fluid_mass = ${inject_fluid_mass} # kg
inject_temp = 90 # degC
inject_time = 91 # days
store_time = 91 # days
produce_time = 91 # days
rest_time = 91 # days
num_cycles = 5 # Currently needs to be <= 10
cycle_length = ${fparse inject_time + store_time + produce_time + rest_time}
end_simulation = ${fparse cycle_length * num_cycles}
# Note: I have setup 10 cycles but you can set num_cycles less than 10.
start_injection1 = 0
start_injection2 = ${cycle_length}
start_injection3 = ${fparse cycle_length * 2}
start_injection4 = ${fparse cycle_length * 3}
start_injection5 = ${fparse cycle_length * 4}
start_injection6 = ${fparse cycle_length * 5}
start_injection7 = ${fparse cycle_length * 6}
start_injection8 = ${fparse cycle_length * 7}
start_injection9 = ${fparse cycle_length * 8}
start_injection10 = ${fparse cycle_length * 9}
end_injection1 = ${fparse start_injection1 + inject_time}
end_injection2 = ${fparse start_injection2 + inject_time}
end_injection3 = ${fparse start_injection3 + inject_time}
end_injection4 = ${fparse start_injection4 + inject_time}
end_injection5 = ${fparse start_injection5 + inject_time}
end_injection6 = ${fparse start_injection6 + inject_time}
end_injection7 = ${fparse start_injection7 + inject_time}
end_injection8 = ${fparse start_injection8 + inject_time}
end_injection9 = ${fparse start_injection9 + inject_time}
end_injection10 = ${fparse start_injection10 + inject_time}
start_production1 = ${fparse end_injection1 + store_time}
start_production2 = ${fparse end_injection2 + store_time}
start_production3 = ${fparse end_injection3 + store_time}
start_production4 = ${fparse end_injection4 + store_time}
start_production5 = ${fparse end_injection5 + store_time}
start_production6 = ${fparse end_injection6 + store_time}
start_production7 = ${fparse end_injection7 + store_time}
start_production8 = ${fparse end_injection8 + store_time}
start_production9 = ${fparse end_injection9 + store_time}
start_production10 = ${fparse end_injection10 + store_time}
end_production1 = ${fparse start_production1 + produce_time}
end_production2 = ${fparse start_production2 + produce_time}
end_production3 = ${fparse start_production3 + produce_time}
end_production4 = ${fparse start_production4 + produce_time}
end_production5 = ${fparse start_production5 + produce_time}
end_production6 = ${fparse start_production6 + produce_time}
end_production7 = ${fparse start_production7 + produce_time}
end_production8 = ${fparse start_production8 + produce_time}
end_production9 = ${fparse start_production9 + produce_time}
end_production10 = ${fparse start_production10 + produce_time}
synctimes = '${start_injection1} ${end_injection1} ${start_production1} ${end_production1}
${start_injection2} ${end_injection2} ${start_production2} ${end_production2}
${start_injection3} ${end_injection3} ${start_production3} ${end_production3}
${start_injection4} ${end_injection4} ${start_production4} ${end_production4}
${start_injection5} ${end_injection5} ${start_production5} ${end_production5}
${start_injection6} ${end_injection6} ${start_production6} ${end_production6}
${start_injection7} ${end_injection7} ${start_production7} ${end_production7}
${start_injection8} ${end_injection8} ${start_production8} ${end_production8}
${start_injection9} ${end_injection9} ${start_production9} ${end_production9}
${start_injection10} ${end_injection10} ${start_production10} ${end_production10}'
#####################################
# Geometry in RZ coordinates
# borehole radius (m)
bh_r = 0.1
# model radius (m)
max_r = 1000
# aquifer thickness (m)
aq_thickness = 20
# cap thickness (m)
cap_thickness = 40
# injection region top and bottom (m). Note, the mesh is created with the aquifer in y = (-0.5 * aq_thickness, 0.5 * aq_thickness), irrespective of depth (depth only sets the insitu porepressure and temperature)
screen_top = ${fparse 0.5 * aq_thickness}
screen_bottom = ${fparse -0.5 * aq_thickness}
# number of elements in radial direction
num_r = 25
# number of elements across half height of aquifer
num_y_aq = 10
# number of elements across height of cap
num_y_cap = 8
# mesh bias in radial direction
bias_r = 1.22
# mesh bias in vertical direction in aquifer top
bias_y_aq_top = 0.9
# mesh bias in vertical direction in cap top
bias_y_cap_top = 1.3
# mesh bias in vertical direction in aquifer bottom
bias_y_aq_bottom = ${fparse 1.0 / bias_y_aq_top}
# mesh bias in vertical direction in cap bottom
bias_y_cap_bottom = ${fparse 1.0 / bias_y_cap_top}
depth_centre = ${fparse depth + aq_thickness/2}
#####################################
# temperature at ground surface (degC)
temp0 = 20
# Vertical geothermal gradient (K/m). A positive number means temperature increases downwards.
geothermal_gradient = 20E-3
#####################################
# Gravity
gravity = -9.81
#####################################
half_aq_thickness = ${fparse aq_thickness * 0.5}
half_height = ${fparse half_aq_thickness + cap_thickness}
approx_screen_length = ${fparse screen_top - screen_bottom}
# Thermal radius (note this is not strictly correct, it should use the bulk specific heat
# capacity as defined below, but it doesn't matter here because this is purely for
# defining the region of refined mesh)
th_r = ${fparse sqrt(inject_fluid_mass / 1000 * 4.12e6 / (approx_screen_length * 3.1416 * aq_specific_heat_cap * aq_density))}
# radius of fine mesh
fine_r = ${fparse th_r * 2}
bias_r_fine = 1
num_r_fine = ${fparse int(fine_r/1)}
######################################
# aquifer properties
aq_porosity = 0.25
aq_hor_perm = 1E-11 # m^2
aq_ver_perm = 2E-12 # m^2
aq_density = 2650 # kg/m^3
aq_specific_heat_cap = 800 # J/Kg/K
aq_hor_thermal_cond = 3 # W/m/K
aq_ver_thermal_cond = 3 # W/m/K
aq_disp_parallel = 0 # m
aq_disp_perp = 0 # m
# Bulk volumetric heat capacity of aquifer:
aq_vol_cp = ${fparse aq_specific_heat_cap * aq_density * (1 - aq_porosity) + 4180 * 1000 * aq_porosity}
# Thermal radius (correct version using bulk cp):
R_th = ${fparse sqrt(inject_fluid_mass * 4180 / (approx_screen_length * 3.1416 * aq_vol_cp))}
aq_lambda_eff_hor = ${fparse aq_hor_thermal_cond + 0.3 * aq_disp_parallel * R_th * aq_vol_cp / (inject_time * 60 * 60 * 24)}
aq_lambda_eff_ver = ${fparse aq_ver_thermal_cond + 0.3 * aq_disp_perp * R_th * aq_vol_cp / (inject_time * 60 * 60 * 24)}
aq_hor_dry_thermal_cond = ${fparse aq_lambda_eff_hor * 60 * 60 * 24} # J/day/m/K
aq_ver_dry_thermal_cond = ${fparse aq_lambda_eff_ver * 60 * 60 * 24} # J/day/m/K
aq_hor_wet_thermal_cond = ${fparse aq_lambda_eff_hor * 60 * 60 * 24} # J/day/m/K
aq_ver_wet_thermal_cond = ${fparse aq_lambda_eff_ver * 60 * 60 * 24} # J/day/m/K
# cap-rock properties
cap_porosity = 0.25
cap_hor_perm = 1E-16 # m^2
cap_ver_perm = 1E-17 # m^2
cap_density = 2650 # kg/m^3
cap_specific_heat_cap = 800 # J/kg/K
cap_hor_thermal_cond = 3 # W/m/K
cap_ver_thermal_cond = 3 # W/m/K
cap_hor_dry_thermal_cond = ${fparse cap_hor_thermal_cond * 60 * 60 * 24} # J/day/m/K
cap_ver_dry_thermal_cond = ${fparse cap_ver_thermal_cond * 60 * 60 * 24} # J/day/m/K
cap_hor_wet_thermal_cond = ${fparse cap_hor_thermal_cond * 60 * 60 * 24} # J/day/m/K
cap_ver_wet_thermal_cond = ${fparse cap_ver_thermal_cond * 60 * 60 * 24} # J/day/m/K
######################################
[Mesh]
coord_type = RZ
[aq_top_fine]
type = GeneratedMeshGenerator
dim = 2
nx = ${num_r_fine}
xmin = ${bh_r}
xmax = ${fine_r}
bias_x = ${bias_r_fine}
bias_y = ${bias_y_aq_top}
ny = ${num_y_aq}
ymin = 0
ymax = ${half_aq_thickness}
[]
[cap_top_fine]
type = GeneratedMeshGenerator
dim = 2
nx = ${num_r_fine}
xmin = ${bh_r}
xmax = ${fine_r}
bias_x = ${bias_r_fine}
bias_y = ${bias_y_cap_top}
ny = ${num_y_cap}
ymax = ${half_height}
ymin = ${half_aq_thickness}
[]
[aq_and_cap_top_fine]
type = StitchedMeshGenerator
inputs = 'aq_top_fine cap_top_fine'
clear_stitched_boundary_ids = true
stitch_boundaries_pairs = 'top bottom'
[]
[aq_bottom_fine]
type = GeneratedMeshGenerator
dim = 2
nx = ${num_r_fine}
xmin = ${bh_r}
xmax = ${fine_r}
bias_x = ${bias_r_fine}
bias_y = ${bias_y_aq_bottom}
ny = ${num_y_aq}
ymax = 0
ymin = -${half_aq_thickness}
[]
[cap_bottom_fine]
type = GeneratedMeshGenerator
dim = 2
nx = ${num_r_fine}
xmin = ${bh_r}
xmax = ${fine_r}
bias_x = ${bias_r_fine}
bias_y = ${bias_y_cap_bottom}
ny = ${num_y_cap}
ymin = -${half_height}
ymax = -${half_aq_thickness}
[]
[aq_and_cap_bottom_fine]
type = StitchedMeshGenerator
inputs = 'aq_bottom_fine cap_bottom_fine'
clear_stitched_boundary_ids = true
stitch_boundaries_pairs = 'bottom top'
[]
[aq_and_cap_fine]
type = StitchedMeshGenerator
inputs = 'aq_and_cap_bottom_fine aq_and_cap_top_fine'
clear_stitched_boundary_ids = true
stitch_boundaries_pairs = 'top bottom'
[]
[aq_top]
type = GeneratedMeshGenerator
dim = 2
nx = ${num_r}
xmin = ${fine_r}
xmax = ${max_r}
bias_x = ${bias_r}
bias_y = ${bias_y_aq_top}
ny = ${num_y_aq}
ymin = 0
ymax = ${half_aq_thickness}
[]
[cap_top]
type = GeneratedMeshGenerator
dim = 2
nx = ${num_r}
xmin = ${fine_r}
xmax = ${max_r}
bias_x = ${bias_r}
bias_y = ${bias_y_cap_top}
ny = ${num_y_cap}
ymax = ${half_height}
ymin = ${half_aq_thickness}
[]
[aq_and_cap_top]
type = StitchedMeshGenerator
inputs = 'aq_top cap_top'
clear_stitched_boundary_ids = true
stitch_boundaries_pairs = 'top bottom'
[]
[aq_bottom]
type = GeneratedMeshGenerator
dim = 2
nx = ${num_r}
xmin = ${fine_r}
xmax = ${max_r}
bias_x = ${bias_r}
bias_y = ${bias_y_aq_bottom}
ny = ${num_y_aq}
ymax = 0
ymin = -${half_aq_thickness}
[]
[cap_bottom]
type = GeneratedMeshGenerator
dim = 2
nx = ${num_r}
xmin = ${fine_r}
xmax = ${max_r}
bias_x = ${bias_r}
bias_y = ${bias_y_cap_bottom}
ny = ${num_y_cap}
ymin = -${half_height}
ymax = -${half_aq_thickness}
[]
[aq_and_cap_bottom]
type = StitchedMeshGenerator
inputs = 'aq_bottom cap_bottom'
clear_stitched_boundary_ids = true
stitch_boundaries_pairs = 'bottom top'
[]
[aq_and_cap]
type = StitchedMeshGenerator
inputs = 'aq_and_cap_bottom aq_and_cap_top'
clear_stitched_boundary_ids = true
stitch_boundaries_pairs = 'top bottom'
[]
[aq_and_cap_all]
type = StitchedMeshGenerator
inputs = 'aq_and_cap_fine aq_and_cap'
clear_stitched_boundary_ids = true
stitch_boundaries_pairs = 'right left'
[]
[aquifer]
type = ParsedSubdomainMeshGenerator
input = aq_and_cap_all
combinatorial_geometry = 'y >= -${half_aq_thickness} & y <= ${half_aq_thickness}'
block_id = 1
[]
[top_cap]
type = ParsedSubdomainMeshGenerator
input = aquifer
combinatorial_geometry = 'y >= ${half_aq_thickness}'
block_id = 2
[]
[bottom_cap]
type = ParsedSubdomainMeshGenerator
input = top_cap
combinatorial_geometry = 'y <= -${half_aq_thickness}'
block_id = 3
[]
[injection_area]
type = ParsedGenerateSideset
combinatorial_geometry = 'x<=${bh_r}*1.000001 & y >= ${screen_bottom} & y <= ${screen_top}'
included_subdomains = 1
new_sideset_name = 'injection_area'
input = 'bottom_cap'
[]
[rename]
type = RenameBlockGenerator
old_block = '1 2 3'
new_block = 'aquifer caps caps'
input = 'injection_area'
[]
[]
[GlobalParams]
PorousFlowDictator = dictator
gravity = '0 ${gravity} 0'
[]
[Variables]
[porepressure]
[]
[temperature]
scaling = 1E-5
[]
[]
[PorousFlowFullySaturated]
coupling_type = ThermoHydro
porepressure = porepressure
temperature = temperature
fp = tabulated_water
stabilization = KT
flux_limiter_type = ${flux_limiter}
use_displaced_mesh = false
temperature_unit = Celsius
pressure_unit = Pa
time_unit = days
[]
[ICs]
[porepressure]
type = FunctionIC
variable = porepressure
function = insitu_pressure
[]
[temperature]
type = FunctionIC
variable = temperature
function = insitu_temperature
[]
[]
[BCs]
[outer_boundary_porepressure]
type = FunctionDirichletBC
preset = true
variable = porepressure
function = insitu_pressure
boundary = 'bottom right top'
[]
[outer_boundary_temperature]
type = FunctionDirichletBC
preset = true
variable = temperature
function = insitu_temperature
boundary = 'bottom right top'
[]
[inject_heat]
type = FunctionDirichletBC
variable = temperature
function = ${inject_temp}
boundary = 'injection_area'
[]
[inject_fluid]
type = PorousFlowSink
variable = porepressure
boundary = injection_area
flux_function = injection_rate_value
[]
[produce_heat]
type = PorousFlowSink
variable = temperature
boundary = injection_area
flux_function = production_rate_value
fluid_phase = 0
use_enthalpy = true
save_in = heat_flux_out
[]
[produce_fluid]
type = PorousFlowSink
variable = porepressure
boundary = injection_area
flux_function = production_rate_value
[]
[]
[Controls]
[inject_on]
type = ConditionalFunctionEnableControl
enable_objects = 'BCs::inject_heat BCs::inject_fluid'
conditional_function = inject
implicit = false
execute_on = 'initial timestep_begin'
[]
[produce_on]
type = ConditionalFunctionEnableControl
enable_objects = 'BCs::produce_heat BCs::produce_fluid'
conditional_function = produce
implicit = false
execute_on = 'initial timestep_begin'
[]
[]
[Functions]
[insitu_pressure]
type = ParsedFunction
expression = '(y - ${depth_centre}) * 1000 * ${gravity} + 1E5' # approx insitu pressure in Pa
[]
[insitu_temperature]
type = ParsedFunction
expression = '${temp0} + (${depth_centre} - y) * ${geothermal_gradient}'
[]
[inject]
type = ParsedFunction
expression = 'if(t >= ${start_injection1} & t < ${end_injection1}, 1,
if(t >= ${start_injection2} & t < ${end_injection2}, 1,
if(t >= ${start_injection3} & t < ${end_injection3}, 1,
if(t >= ${start_injection4} & t < ${end_injection4}, 1,
if(t >= ${start_injection5} & t < ${end_injection5}, 1,
if(t >= ${start_injection6} & t < ${end_injection6}, 1,
if(t >= ${start_injection7} & t < ${end_injection7}, 1,
if(t >= ${start_injection8} & t < ${end_injection8}, 1,
if(t >= ${start_injection9} & t < ${end_injection9}, 1,
if(t >= ${start_injection10} & t < ${end_injection10}, 1, 0))))))))))'
[]
[produce]
type = ParsedFunction
expression = 'if(t >= ${start_production1} & t < ${end_production1}, 1,
if(t >= ${start_production2} & t < ${end_production2}, 1,
if(t >= ${start_production3} & t < ${end_production3}, 1,
if(t >= ${start_production4} & t < ${end_production4}, 1,
if(t >= ${start_production5} & t < ${end_production5}, 1,
if(t >= ${start_production6} & t < ${end_production6}, 1,
if(t >= ${start_production7} & t < ${end_production7}, 1,
if(t >= ${start_production8} & t < ${end_production8}, 1,
if(t >= ${start_production9} & t < ${end_production9}, 1,
if(t >= ${start_production10} & t < ${end_production10}, 1, 0))))))))))'
[]
[injection_rate_value]
type = ParsedFunction
symbol_names = true_screen_area
symbol_values = true_screen_area
expression = '-${inject_fluid_mass}/(true_screen_area * ${inject_time})'
[]
[production_rate_value]
type = ParsedFunction
symbol_names = true_screen_area
symbol_values = true_screen_area
expression = '${produce_fluid_mass}/(true_screen_area * ${produce_time})'
[]
[heat_out_in_timestep]
type = ParsedFunction
symbol_names = 'dt heat_out'
symbol_values = 'dt heat_out_fromBC'
expression = 'dt*heat_out'
[]
[produced_T_time_integrated]
type = ParsedFunction
symbol_names = 'dt produced_T'
symbol_values = 'dt produced_T'
expression = 'dt*produced_T / ${produce_time}'
[]
[]
[AuxVariables]
[density]
family = MONOMIAL
order = CONSTANT
[]
[porosity]
family = MONOMIAL
order = CONSTANT
[]
[heat_flux_out]
outputs = none
[]
[]
[AuxKernels]
[density]
type = PorousFlowPropertyAux
variable = density
property = density
[]
[porosity]
type = PorousFlowPropertyAux
variable = porosity
property = porosity
[]
[]
[FluidProperties]
[true_water]
type = Water97FluidProperties
[]
[tabulated_water]
type = TabulatedFluidProperties
fp = true_water
temperature_min = 275 # K
temperature_max = 600
interpolated_properties = 'density viscosity enthalpy internal_energy'
fluid_property_file = water97_tabulated_modified.csv
[]
[]
[Materials]
[porosity_aq]
type = PorousFlowPorosityConst
porosity = ${aq_porosity}
block = aquifer
[]
[porosity_caps]
type = PorousFlowPorosityConst
porosity = ${cap_porosity}
block = caps
[]
[permeability_aquifer]
type = PorousFlowPermeabilityConst
block = aquifer
permeability = '${aq_hor_perm} 0 0 0 ${aq_ver_perm} 0 0 0 0'
[]
[permeability_caps]
type = PorousFlowPermeabilityConst
block = caps
permeability = '${cap_hor_perm} 0 0 0 ${cap_ver_perm} 0 0 0 0'
[]
[aq_internal_energy]
type = PorousFlowMatrixInternalEnergy
block = aquifer
density = ${aq_density}
specific_heat_capacity = ${aq_specific_heat_cap}
[]
[caps_internal_energy]
type = PorousFlowMatrixInternalEnergy
block = caps
density = ${cap_density}
specific_heat_capacity = ${cap_specific_heat_cap}
[]
[aq_thermal_conductivity]
type = PorousFlowThermalConductivityIdeal
block = aquifer
dry_thermal_conductivity = '${aq_hor_dry_thermal_cond} 0 0 0 ${aq_ver_dry_thermal_cond} 0 0 0 0'
wet_thermal_conductivity = '${aq_hor_wet_thermal_cond} 0 0 0 ${aq_ver_wet_thermal_cond} 0 0 0 0'
[]
[caps_thermal_conductivity]
type = PorousFlowThermalConductivityIdeal
block = caps
dry_thermal_conductivity = '${cap_hor_dry_thermal_cond} 0 0 0 ${cap_ver_dry_thermal_cond} 0 0 0 0'
wet_thermal_conductivity = '${cap_hor_wet_thermal_cond} 0 0 0 ${cap_ver_wet_thermal_cond} 0 0 0 0'
[]
[]
[Postprocessors]
[true_screen_area] # this accounts for meshes that do not match screen_top and screen_bottom exactly
type = AreaPostprocessor
boundary = injection_area
execute_on = 'initial'
outputs = 'none'
[]
[dt]
type = TimestepSize
[]
[heat_out_fromBC]
type = NodalSum
variable = heat_flux_out
boundary = injection_area
execute_on = 'initial timestep_end'
outputs = 'none'
[]
[heat_out_per_timestep]
type = FunctionValuePostprocessor
function = heat_out_in_timestep
execute_on = 'timestep_end'
outputs = 'none'
[]
[heat_out_cumulative]
type = CumulativeValuePostprocessor
postprocessor = heat_out_per_timestep
execute_on = 'timestep_end'
outputs = 'csv console'
[]
[produced_T]
type = SideAverageValue
boundary = injection_area
variable = temperature
execute_on = 'initial timestep_end'
outputs = 'csv console'
[]
[produced_T_time_integrated]
type = FunctionValuePostprocessor
function = produced_T_time_integrated
execute_on = 'timestep_end'
outputs = 'none'
[]
[produced_T_cumulative]
type = CumulativeValuePostprocessor
postprocessor = produced_T_time_integrated
execute_on = 'timestep_end'
outputs = 'csv console'
[]
[]
[Preconditioning]
[basic]
type = SMP
full = true
petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = ' asm lu NONZERO 2'
[]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = ${end_simulation}
timestep_tolerance = 1e-5
[TimeStepper]
type = IterationAdaptiveDT
dt = 1e-3
growth_factor = 2
[]
dtmax = 1
dtmin = 1e-5
# rough calc for fluid, |R| ~ V*k*1E6 ~ V*1E-5
# rough calc for heat, |R| ~ V*(lam*1E-3 + h*1E-5) ~ V*(1E3 + 1E-2)
# so scale heat by 1E-7 and go for nl_abs_tol = 1E-4, which should give a max error of
# ~1Pa and ~0.1K in the first metre around the borehole
nl_abs_tol = 1E-4
nl_rel_tol = 1E-5
[]
[Outputs]
sync_times = ${synctimes}
[ex]
type = Exodus
time_step_interval = 20
[]
[csv]
type = CSV
execute_postprocessors_on = 'initial timestep_end'
[]
[]
(modules/combined/examples/optimization/helmholtz_multimat_strip.i)
vol_frac = 0.35
power = 1.1
Emin = 1.0e-6
Ess = 0.475 # ss
Et = 1.0 # w
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Mesh]
# final_generator = 'MoveRight'
[Bottom]
type = GeneratedMeshGenerator
dim = 2
nx = 320
ny = 30
xmin = 0
xmax = 150
ymin = 0
ymax = 15
[]
[RenameBottom]
type = RenameBoundaryGenerator
input = Bottom
old_boundary = 'top bottom right left'
new_boundary = 'top_bottom bottom_bottom right_bottom left_bottom'
[]
[Middle]
type = GeneratedMeshGenerator
dim = 2
nx = 320
ny = 6
xmin = 0
xmax = 150
ymin = 0
ymax = 3
[]
[MoveMiddle]
type = TransformGenerator
input = Middle
transform = TRANSLATE
vector_value = '0 15 0'
[]
[RenameMiddle]
type = RenameBoundaryGenerator
input = MoveMiddle
old_boundary = 'top bottom right left'
new_boundary = 'top_middle bottom_middle right_middle left_middle'
[]
[Top]
type = GeneratedMeshGenerator
dim = 2
nx = 320
ny = 30
xmin = 0
xmax = 150
ymin = 0
ymax = 15
[]
[MoveTop]
type = TransformGenerator
input = Top
transform = TRANSLATE
vector_value = '0 18 0'
[]
[RenameTop]
type = RenameBoundaryGenerator
input = MoveTop
old_boundary = 'top bottom right left'
new_boundary = 'top_top bottom_top right_top left_top'
[]
[bottom_gen]
type = ParsedSubdomainMeshGenerator
input = RenameBottom
combinatorial_geometry = 'y <= 15'
block_id = 1
[]
[middle_gen]
type = ParsedSubdomainMeshGenerator
input = RenameMiddle
combinatorial_geometry = 'y <= 18 & y > 15'
block_id = 2
[]
[top_gen]
type = ParsedSubdomainMeshGenerator
input = RenameTop
combinatorial_geometry = 'y > 18'
block_id = 3
[]
[stitch]
type = StitchedMeshGenerator
inputs = 'bottom_gen middle_gen top_gen'
stitch_boundaries_pairs = 'top_bottom bottom_middle; top_middle bottom_top'
[]
[left_load]
type = ExtraNodesetGenerator
input = stitch
new_boundary = left_load
coord = '37.5 33 0'
[]
[right_load]
type = ExtraNodesetGenerator
input = left_load
new_boundary = right_load
coord = '112.5 33 0'
[]
[left_support]
type = ExtraNodesetGenerator
input = right_load
new_boundary = left_support
coord = '0 0 0'
[]
[right_support]
type = ExtraNodesetGenerator
input = left_support
new_boundary = right_support
coord = '150 0 0'
[]
[]
[Variables]
[disp_x]
[]
[disp_y]
[]
[Dc]
initial_condition = -1.0
[]
[]
[AuxVariables]
[Cc]
family = MONOMIAL
order = CONSTANT
initial_condition = -1.0
[]
[mat_den]
family = MONOMIAL
order = CONSTANT
initial_condition = ${vol_frac}
[]
[sensitivity]
family = MONOMIAL
order = FIRST
initial_condition = -1.0
[AuxKernel]
type = MaterialRealAux
variable = sensitivity
property = sensitivity
execute_on = LINEAR
[]
block = '1 2 3'
[]
[mat_den_nodal]
family = L2_LAGRANGE
order = FIRST
initial_condition = ${vol_frac}
[AuxKernel]
type = SelfAux
execute_on = TIMESTEP_END
variable = mat_den_nodal
v = mat_den
[]
[]
[Dc_elem]
family = MONOMIAL
order = CONSTANT
initial_condition = -1.0
[AuxKernel]
type = SelfAux
variable = Dc_elem
v = Dc
execute_on = 'TIMESTEP_END'
[]
[]
[]
[Kernels]
[diffusion]
type = FunctionDiffusion
variable = Dc
function = 4.0
[]
[potential]
type = Reaction
variable = Dc
[]
[source]
type = CoupledForce
variable = Dc
v = sensitivity
[]
[]
[Modules/TensorMechanics/Master]
[all]
strain = SMALL
add_variables = true
incremental = false
[]
[]
[BCs]
[no_y]
type = DirichletBC
variable = disp_y
boundary = left_support
value = 0.0
[]
[no_x]
type = DirichletBC
variable = disp_x
boundary = left_support
value = 0.0
[]
[no_y_right]
type = DirichletBC
variable = disp_y
boundary = right_support
value = 0.0
[]
[boundary_penalty]
type = ADRobinBC
variable = Dc
boundary = 'bottom_bottom right_bottom left_bottom top_top right_top left_top left_middle '
'right_middle'
coefficient = 10
[]
[]
[NodalKernels]
[left_down]
type = NodalGravity
variable = disp_y
boundary = left_load
gravity_value = -1e-3
mass = 1
[]
[right_down]
type = NodalGravity
variable = disp_y
boundary = right_load
gravity_value = -1e-3
mass = 1
[]
[]
[Materials]
[sensitivity]
type = ParsedMaterial
property_name = 'sensitivity'
block = '2'
expression = '0'
[]
[elasticity_tensor_one]
type = ComputeVariableIsotropicElasticityTensor
youngs_modulus = E_phys_one
poissons_ratio = poissons_ratio
args = 'mat_den'
block = '1'
[]
[elasticity_tensor_three]
type = ComputeVariableIsotropicElasticityTensor
youngs_modulus = E_phys_three
poissons_ratio = poissons_ratio
args = 'mat_den'
block = '3'
[]
[elasticity_tensor_two]
type = ComputeIsotropicElasticityTensor
youngs_modulus = 1.0
poissons_ratio = 0.3
block = '2'
[]
# One: Tungsten
[E_phys_one]
type = DerivativeParsedMaterial
# Emin + (density^penal) * (E0 - Emin)
expression = '${Emin} + (mat_den ^ ${power}) * (${Et}-${Emin})'
coupled_variables = 'mat_den'
property_name = E_phys_one
block = '1'
outputs = 'exodus'
[]
# Three: SS316
[E_phys_three]
type = DerivativeParsedMaterial
# Emin + (density^penal) * (E0 - Emin)
expression = '${Emin} + (mat_den ^ ${power}) * (${Ess}-${Emin})'
coupled_variables = 'mat_den'
property_name = E_phys_three
block = '3'
outputs = 'exodus'
[]
[poissons_ratio]
type = GenericConstantMaterial
prop_names = poissons_ratio
prop_values = 0.3
[]
[stress]
type = ComputeLinearElasticStress
[]
[dc_one]
type = ComplianceSensitivity
design_density = mat_den
youngs_modulus = E_phys_one
block = '1'
[]
[dc_three]
type = ComplianceSensitivity
design_density = mat_den
youngs_modulus = E_phys_three
block = '3'
[]
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
[UserObjects]
[update_one]
type = DensityUpdate
density_sensitivity = Dc_elem
design_density = mat_den
volume_fraction = ${vol_frac}
execute_on = TIMESTEP_BEGIN
block = '1'
[]
[update_three]
type = DensityUpdate
density_sensitivity = Dc_elem
design_density = mat_den
volume_fraction = ${vol_frac}
execute_on = TIMESTEP_BEGIN
block = '3'
[]
[]
[Executioner]
type = Transient
solve_type = NEWTON
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = 'lu superlu_dist'
nl_abs_tol = 1e-10
dt = 1.0
num_steps = 90
[]
[Outputs]
exodus = true
[out]
type = CSV
execute_on = 'TIMESTEP_END'
[]
print_linear_residuals = false
[]
[Postprocessors]
[mesh_volume]
type = VolumePostprocessor
execute_on = 'initial timestep_end'
[]
[total_vol]
type = ElementIntegralVariablePostprocessor
variable = mat_den
execute_on = 'INITIAL TIMESTEP_END'
[]
[vol_frac]
type = ParsedPostprocessor
expression = 'total_vol / mesh_volume'
pp_names = 'total_vol mesh_volume'
[]
[sensitivity]
type = ElementIntegralMaterialProperty
mat_prop = sensitivity
block = '1 3'
[]
[objective_one]
type = ElementIntegralMaterialProperty
mat_prop = strain_energy_density
execute_on = 'INITIAL TIMESTEP_END'
block = '1'
[]
[objective_three]
type = ElementIntegralMaterialProperty
mat_prop = strain_energy_density
execute_on = 'INITIAL TIMESTEP_END'
block = '3'
[]
[]
(test/tests/positions/element_centroid_positions.i)
[Mesh]
[cmg]
type = CartesianMeshGenerator
ix = 3
iy = 4
iz = 5
dx = 1
dy = 2
dz = 1.5
dim = 3
[]
[new_block]
type = ParsedSubdomainMeshGenerator
input = cmg
combinatorial_geometry = 'x>0.6&z<1.1'
block_name = 1
block_id = 1
[]
[]
[Positions]
[all_mesh]
type = ElementCentroidPositions
# For testing reproducibility
auto_sort = true
[]
[block_1]
type = ElementCentroidPositions
block = 1
# For testing reproducibility
auto_sort = true
[]
[]
[Problem]
solve = false
[]
[Executioner]
type = Steady
[]
[Postprocessors]
[num_pos]
type = NumPositions
positions = all_mesh
[]
[]
[Outputs]
[out]
type = JSON
execute_on = FINAL
execute_system_information_on = none
[]
[]
(test/tests/outputs/debug/show_execution_kernels_bcs.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
xmin = -1
xmax = 1
ymin = -1
ymax = 1
nx = 10
ny = 10
elem_type = QUAD9
[]
[left]
type = ParsedSubdomainMeshGenerator
input = 'gmg'
combinatorial_geometry = 'x < 0.5'
block_id = '2'
[]
[middle_boundary]
type = SideSetsBetweenSubdomainsGenerator
input = 'left'
primary_block = '0'
paired_block = '2'
new_boundary = 'middle'
[]
[]
[Functions]
[forcing_fnu]
type = ParsedFunction
expression = -5.8*(x+y)+x*x*x-x+y*y*y-y
[]
[forcing_fnv]
type = ParsedFunction
expression = -4
[]
[slnu]
type = ParsedGradFunction
expression = x*x*x-x+y*y*y-y
grad_x = 3*x*x-1
grad_y = 3*y*y-1
[]
[slnv]
type = ParsedGradFunction
expression = x*x+y*y
grad_x = 2*x
grad_y = 2*y
[]
# NeumannBC functions
[bc_fnut]
type = ParsedFunction
expression = 3*y*y-1
[]
[bc_fnub]
type = ParsedFunction
expression = -3*y*y+1
[]
[bc_fnul]
type = ParsedFunction
expression = -3*x*x+1
[]
[bc_fnur]
type = ParsedFunction
expression = 3*x*x-1
[]
[]
[Variables]
[u]
order = THIRD
family = HIERARCHIC
[]
[v]
order = SECOND
family = LAGRANGE
[]
[]
[Kernels]
[diff1]
type = Diffusion
variable = u
[]
[test1]
type = CoupledConvection
variable = u
velocity_vector = v
[]
[diff2]
type = Diffusion
variable = v
[]
[react]
type = Reaction
variable = u
[]
[forceu]
type = BodyForce
variable = u
function = forcing_fnu
[]
[forcev]
type = BodyForce
variable = v
function = forcing_fnv
[]
[]
[BCs]
[bc_v]
type = FunctionDirichletBC
variable = v
function = slnv
boundary = 'left right top bottom'
[]
[bc_u_tb]
type = CoupledKernelGradBC
variable = u
var2 = v
vel = '0.1 0.1'
boundary = 'top bottom left right'
[]
[bc_ul]
type = FunctionNeumannBC
variable = u
function = bc_fnul
boundary = 'left'
[]
[bc_ur]
type = FunctionNeumannBC
variable = u
function = bc_fnur
boundary = 'right'
[]
[bc_ut]
type = FunctionNeumannBC
variable = u
function = bc_fnut
boundary = 'top'
[]
[bc_ub]
type = FunctionNeumannBC
variable = u
function = bc_fnub
boundary = 'bottom'
[]
[]
[Dampers]
active = ''
[limit_v]
type = BoundingValueElementDamper
variable = v
max_value = 1.5
min_value = -20
[]
[limit_u]
type = BoundingValueElementDamper
variable = u
max_value = 1.5
min_value = -20
[]
[]
[InterfaceKernels]
[diff_ik_2]
type = InterfaceDiffusion
variable = 'u'
neighbor_var = 'v'
boundary = 'middle'
[]
[diff_ik_1]
type = InterfaceDiffusion
variable = 'v'
neighbor_var = 'u'
boundary = 'middle'
[]
[]
[DGKernels]
[diff_dg_2]
type = DGDiffusion
variable = 'u'
epsilon = -1
sigma = 6
[]
[diff_dg_1]
type = DGDiffusion
variable = 'u'
epsilon = -1
sigma = 6
[]
[]
[DiracKernels]
[source_2]
type = FunctionDiracSource
variable = 'u'
point = '0.1 0.1 0'
function = 'x + y'
[]
[source_1]
type = FunctionDiracSource
variable = 'u'
point = '0.1 0.1 0'
function = 'x + y'
block = '2'
[]
[source_0]
type = FunctionDiracSource
variable = 'u'
# in block 0, but since it's not block restricted it shows up as active in
# block 2 as well
point = '0.6 0.5 0'
function = 'x + y'
[]
[]
[Materials]
[diff]
type = GenericConstantMaterial
prop_names = 'D D_neighbor'
prop_values = '0 0'
[]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
nl_rel_tol = 1e-15
nl_abs_tol = 1e-13
[]
[Debug]
show_execution_order = 'NONE ALWAYS INITIAL NONLINEAR LINEAR TIMESTEP_BEGIN TIMESTEP_END FINAL'
[]
(test/tests/transfers/general_field/nearest_node/nearest_position/sub_holes.i)
[Mesh]
# Create a 4 rectangle pin lattice
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 100
ny = 100
xmax = 1
ymax = 1
[]
[pin_1]
type = ParsedSubdomainMeshGenerator
input = gmg
combinatorial_geometry = 'x > 0.1 & x < 0.2 & y > 0.1 & y < 0.2'
block_id = 1
[]
[pin_2]
type = ParsedSubdomainMeshGenerator
input = pin_1
combinatorial_geometry = 'x > 0.5 & x < 0.7 & y > 0.1 & y < 0.2'
block_id = 2
[]
[pin_3]
type = ParsedSubdomainMeshGenerator
input = pin_2
combinatorial_geometry = 'x > 0.1 & x < 0.2 & y > 0.4 & y < 0.6'
block_id = 3
[]
[pin_4]
type = ParsedSubdomainMeshGenerator
input = pin_3
combinatorial_geometry = 'x > 0.8 & x < 0.9 & y > 0.7 & y < 0.9'
block_id = 4
[]
[delete_back]
type = BlockDeletionGenerator
input = pin_4
block = '0'
[]
[]
[AuxVariables]
[to_main]
[]
[to_main_elem]
order = CONSTANT
family = MONOMIAL
[]
[]
[ICs]
[pin_1]
type = ConstantIC
variable = to_main
value = 1
block = 1
[]
[pin_2]
type = ConstantIC
variable = to_main
value = 2
block = 2
[]
[pin_3]
type = ConstantIC
variable = to_main
value = 3
block = 3
[]
[pin_4]
type = ConstantIC
variable = to_main
value = 4
block = 4
[]
[pin_1_elem]
type = ConstantIC
variable = to_main_elem
value = 1
block = 1
[]
[pin_2_elem]
type = ConstantIC
variable = to_main_elem
value = 2
block = 2
[]
[pin_3_elem]
type = ConstantIC
variable = to_main_elem
value = 3
block = 3
[]
[pin_4_elem]
type = ConstantIC
variable = to_main_elem
value = 4
block = 4
[]
[]
[Executioner]
type = Transient
num_steps = 1
[]
[Problem]
solve = false
[]
[Outputs]
[out]
type = Exodus
overwrite = true
[]
[]
(test/tests/meshgenerators/parsed_subdomain_mesh_generator/parsed_subdomain_mg.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 10
ny = 10
xmax = 1
ymax = 1
uniform_refine = 2
[]
[subdomains]
type = ParsedSubdomainMeshGenerator
input = gmg
combinatorial_geometry = 'x > 0.1 & x < 0.9 & y > 0.1 & y < 0.9'
block_id = 1
[]
[subdomains2]
type = ParsedSubdomainMeshGenerator
combinatorial_geometry = 'x < 0.5 & y < 0.5'
excluded_subdomains = '0'
block_id = 2
input = subdomains
[]
[]
[Outputs]
exodus = true
[]
(test/tests/meshgenerators/parsed_subdomain_mesh_generator/parsed_subdomain_eeid.i)
[Mesh]
[gmg]
type = CartesianMeshGenerator
dim = 2
dx = '1 1'
dy = '2 1'
ix = '1 2'
iy = '3 2'
subdomain_id = '0 1 2 3'
[]
[add_eeid]
type = PlaneIDMeshGenerator
input = 'gmg'
plane_coordinates = '-2 0 1 3'
num_ids_per_plane = ' 1 2 1'
plane_axis = 'y'
id_name = 'test_id1'
tolerance = 1
[]
[subdomains]
type = ParsedSubdomainMeshGenerator
input = add_eeid
# Only elements on subdomain 2 and 3 should match this
combinatorial_geometry = 'test_id1 > 2'
extra_element_id_names = 'test_id1'
block_id = 4
[]
[]
[Outputs]
exodus = true
[]
(test/tests/transfers/general_field/user_object/subdomain/sub.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 2
nx = 5
ny = 5
xmax = 0.2
ymax = 0.2
[]
[add_block]
type = ParsedSubdomainMeshGenerator
input = gmg
combinatorial_geometry = 'x > 0.05 & y < 0.1'
block_id = 1
[]
[]
[AuxVariables]
[from_main]
initial_condition = -1
[]
[from_main_elem]
order = CONSTANT
family = MONOMIAL
initial_condition = -1
[]
[to_main]
[InitialCondition]
type = FunctionIC
function = '3 + 2*x*x + 3*y*y*y'
[]
[]
[to_main_elem]
order = CONSTANT
family = MONOMIAL
[InitialCondition]
type = FunctionIC
function = '4 + 2*x*x + 3*y*y*y'
[]
[]
[]
[UserObjects]
[to_main]
type = LayeredAverage
direction = x
num_layers = 10
variable = to_main
[]
[to_main_elem]
type = LayeredAverage
direction = x
num_layers = 10
variable = to_main_elem
[]
[]
[Executioner]
type = Transient
num_steps = 1
[]
[Problem]
solve = false
[]
[Outputs]
exodus = true
hide = 'to_main to_main_elem'
execute_on = 'TIMESTEP_END'
[]
(modules/solid_mechanics/test/tests/shell/static/pinched_cylinder_symm.i)
# Test for displacement of pinched cylinder
# Ref: Figure 10 and Table 6 from Dvorkin and Bathe, Eng. Comput., Vol. 1, 1984.
# A cylinder of radius 1 m and length 2 m (along Z axis) with clamped ends
# (at z = 0 and 2 m) is pinched at mid-length by placing point loads of 10 N
# at (1, 0, 1) and (-1, 0, 1). Due to the symmetry of the problem, only 1/8th
# of the cylinder needs to be modeled.
# The normalized series solution for the displacement at the loading point is
# w = Wc E t / P = 164.24; where Wc is the displacement in m, E is the Young's
# modulus, t is the thickness and P is the point load.
# For this problem, E = 1e6 Pa, L = 2 m, R = 1 m, t = 0.01 m, P = 10 N and
# Poisson's ratio = 0.3. FEM results from different mesh discretizations are
# presented below. Only the 10x10 mesh is included as a test.
# Mesh of 1/8 cylinder | FEM/analytical (Moose) | FEM/analytical (Dvorkin)
# |ratio of normalized disp.| ratio of normalized disp.
#----------------------|-------------------------|-------------------------
# 10 x 10 | 0.806 | 0.83
# 20 x 20 | 1.06 | 0.96
# 40 x 40 | 0.95 | -
# 80 x 160 | 0.96 | -
# The results from FEM analysis matches well with the series solution and with
# the solution presented by Dvorkin and Bathe (1984).
[Mesh]
[./mesh]
type = FileMeshGenerator
file = pinched_cyl_10_10.msh
[../]
[./block_100]
type = ParsedSubdomainMeshGenerator
input = mesh
combinatorial_geometry = 'x > -1.1 & x < 1.1 & y > -1.1 & y < 1.1 & z > -0.1 & z < 2.1'
block_id = 100
[../]
[./nodeset_1]
type = BoundingBoxNodeSetGenerator
input = block_100
top_right = '1.1 1.1 0'
bottom_left = '-1.1 -1.1 0'
new_boundary = 'CD' #CD
[../]
[./nodeset_2]
type = BoundingBoxNodeSetGenerator
input = nodeset_1
top_right = '1.1 1.1 1.0'
bottom_left = '-1.1 -1.1 1.0'
new_boundary = 'AB' #AB
[../]
[./nodeset_3]
type = BoundingBoxNodeSetGenerator
input = nodeset_2
top_right = '0.02 1.1 1.0'
bottom_left = '-0.1 0.98 0.0'
new_boundary = 'AD' #AD
[../]
[./nodeset_4]
type = BoundingBoxNodeSetGenerator
input = nodeset_3
top_right = '1.1 0.02 1.0'
bottom_left = '0.98 -0.1 0.0'
new_boundary = 'BC' #BC
[../]
[]
[Variables]
[./disp_x]
order = FIRST
family = LAGRANGE
[../]
[./disp_y]
order = FIRST
family = LAGRANGE
[../]
[./disp_z]
order = FIRST
family = LAGRANGE
[../]
[./rot_x]
order = FIRST
family = LAGRANGE
[../]
[./rot_y]
order = FIRST
family = LAGRANGE
[../]
[]
[BCs]
[./simply_support_x]
type = DirichletBC
variable = disp_x
boundary = 'CD AD'
value = 0.0
[../]
[./simply_support_y]
type = DirichletBC
variable = disp_y
boundary = 'CD BC'
value = 0.0
[../]
[./simply_support_z]
type = DirichletBC
variable = disp_z
boundary = 'CD AB'
value = 0.0
[../]
[./simply_support_rot_x]
type = DirichletBC
variable = rot_x
boundary = 'CD BC'
value = 0.0
[../]
[./simply_support_rot_y]
type = DirichletBC
variable = rot_y
boundary = 'CD AD'
value = 0.0
[../]
[]
[DiracKernels]
[./point1]
type = ConstantPointSource
variable = disp_x
point = '1 0 1'
value = -2.5 # P = 10
[../]
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
solve_type = NEWTON
line_search = 'none'
nl_rel_tol = 1e-10
nl_abs_tol = 1e-8
dt = 1.0
dtmin = 1.0
end_time = 1.0
[]
[Kernels]
[./solid_disp_x]
type = ADStressDivergenceShell
block = '100'
component = 0
variable = disp_x
through_thickness_order = SECOND
[../]
[./solid_disp_y]
type = ADStressDivergenceShell
block = '100'
component = 1
variable = disp_y
through_thickness_order = SECOND
[../]
[./solid_disp_z]
type = ADStressDivergenceShell
block = '100'
component = 2
variable = disp_z
through_thickness_order = SECOND
[../]
[./solid_rot_x]
type = ADStressDivergenceShell
block = '100'
component = 3
variable = rot_x
through_thickness_order = SECOND
[../]
[./solid_rot_y]
type = ADStressDivergenceShell
block = '100'
component = 4
variable = rot_y
through_thickness_order = SECOND
[../]
[]
[Materials]
[./elasticity]
type = ADComputeIsotropicElasticityTensorShell
youngs_modulus = 1e6
poissons_ratio = 0.3
block = '100'
through_thickness_order = SECOND
[../]
[./strain]
type = ADComputeIncrementalShellStrain
block = '100'
displacements = 'disp_x disp_y disp_z'
rotations = 'rot_x rot_y'
thickness = 0.01
through_thickness_order = SECOND
[../]
[./stress]
type = ADComputeShellStress
block = '100'
through_thickness_order = SECOND
[../]
[]
[Postprocessors]
[./disp_z2]
type = PointValue
point = '1 0 1'
variable = disp_x
[../]
[]
[Outputs]
exodus = true
[]
(test/tests/meshgenerators/flip_sideset_generator/flux_flip_3D.i)
[Mesh]
[gmg]
type = GeneratedMeshGenerator
dim = 3
nx = 3
ny = 3
nz = 3
xmax = 3
ymax = 3
zmax = 3
[]
[subdomains]
type = ParsedSubdomainMeshGenerator
input = gmg
combinatorial_geometry = 'x < 1 & y > 1 & y < 2'
block_id = 1
[]
[sideset]
type = ParsedGenerateSideset
input = subdomains
combinatorial_geometry = 'z < 1'
included_subdomains = '1'
normal = '1 0 0'
new_sideset_name = interior
[]
[flip]
type = FlipSidesetGenerator
input = sideset
boundary = interior
[]
[]
[AuxVariables]
[u]
[]
[]
[AuxKernels]
[diffusion]
type = FunctionAux
variable = u
function = func
[]
[]
[Functions]
[func]
type = ParsedFunction
expression = x+y+z
[]
[]
[Problem]
type = FEProblem
solve = false
[]
[Postprocessors]
[flux]
type = SideDiffusiveFluxIntegral
variable = u
boundary = interior
diffusivity = 1
[]
[area]
type = AreaPostprocessor
boundary = interior
[]
[]
[Executioner]
type = Steady
[]
[Outputs]
csv = true
[]