- fileThe name of the mesh file to read
C++ Type:MeshFileName
Description:The name of the mesh file to read
FileMesh
Read a mesh from a file.
Support File Formats
The FileMesh is the default type for MOOSE and as the name suggests it reads the mesh from an external file. MOOSE supports reading and writing a large number of formats and could be extended to read more.
| Extension | Description |
|---|---|
| .e, .exd | Sandia's ExodusII format |
| .dat | Tecplot ASCII file |
| .fro | ACDL's surface triangulation file |
| .gmv | LANL's GMV (General Mesh Viewer) format |
| .mat | Matlab triangular ASCII file (read only) |
| .msh | GMSH ASCII file |
| .n, .nem | Sandia's Nemesis format |
| .plt | Tecplot binary file (write only) |
| .node, .ele; .poly | TetGen ASCII file (read; write) |
| .inp | Abaqus .inp format (read only) |
| .ucd | AVS's ASCII UCD format |
| .unv | I-deas Universal format |
| .xda, .xdr | libMesh formats |
| .vtk, .pvtu | Visualization Toolkit |
Input Parameters
- ghosting_patch_sizeThe number of nearest neighbors considered for ghosting purposes when 'iteration' patch update strategy is used. Default is 5 * patch_size.
C++ Type:unsigned int
Options:
Description:The number of nearest neighbors considered for ghosting purposes when 'iteration' patch update strategy is used. Default is 5 * patch_size.
- parallel_typeDEFAULTDEFAULT: Use libMesh::ReplicatedMesh unless --distributed-mesh is specified on the command line REPLICATED: Always use libMesh::ReplicatedMesh DISTRIBUTED: Always use libMesh::DistributedMesh
Default:DEFAULT
C++ Type:MooseEnum
Options:DEFAULT REPLICATED DISTRIBUTED
Description:DEFAULT: Use libMesh::ReplicatedMesh unless --distributed-mesh is specified on the command line REPLICATED: Always use libMesh::ReplicatedMesh DISTRIBUTED: Always use libMesh::DistributedMesh
- max_leaf_size10The maximum number of points in each leaf of the KDTree used in the nearest neighbor search. As the leaf size becomes larger,KDTree construction becomes faster but the nearest neighbor searchbecomes slower.
Default:10
C++ Type:unsigned int
Options:
Description:The maximum number of points in each leaf of the KDTree used in the nearest neighbor search. As the leaf size becomes larger,KDTree construction becomes faster but the nearest neighbor searchbecomes slower.
- allow_renumberingTrueIf allow_renumbering=false, node and element numbers are kept fixed until deletion
Default:True
C++ Type:bool
Options:
Description:If allow_renumbering=false, node and element numbers are kept fixed until deletion
Optional Parameters
- dim1This is only required for certain mesh formats where the dimension of the mesh cannot be autodetected. In particular you must supply this for GMSH meshes. Note: This is completely ignored for ExodusII meshes!
Default:1
C++ Type:MooseEnum
Options:1 2 3
Description:This is only required for certain mesh formats where the dimension of the mesh cannot be autodetected. In particular you must supply this for GMSH meshes. Note: This is completely ignored for ExodusII meshes!
- enableTrueSet the enabled status of the MooseObject.
Default:True
C++ Type:bool
Options:
Description:Set the enabled status of the MooseObject.
- patch_update_strategyneverHow often to update the geometric search 'patch'. The default is to never update it (which is the most efficient but could be a problem with lots of relative motion). 'always' will update the patch for all slave nodes at the beginning of every timestep which might be time consuming. 'auto' will attempt to determine at the start of which timesteps the patch for all slave nodes needs to be updated automatically.'iteration' updates the patch at every nonlinear iteration for a subset of slave nodes for which penetration is not detected. If there can be substantial relative motion between the master and slave surfaces during the nonlinear iterations within a timestep, it is advisable to use 'iteration' option to ensure accurate contact detection.
Default:never
C++ Type:MooseEnum
Options:never always auto iteration
Description:How often to update the geometric search 'patch'. The default is to never update it (which is the most efficient but could be a problem with lots of relative motion). 'always' will update the patch for all slave nodes at the beginning of every timestep which might be time consuming. 'auto' will attempt to determine at the start of which timesteps the patch for all slave nodes needs to be updated automatically.'iteration' updates the patch at every nonlinear iteration for a subset of slave nodes for which penetration is not detected. If there can be substantial relative motion between the master and slave surfaces during the nonlinear iterations within a timestep, it is advisable to use 'iteration' option to ensure accurate contact detection.
- control_tagsAdds user-defined labels for accessing object parameters via control logic.
C++ Type:std::vector
Options:
Description:Adds user-defined labels for accessing object parameters via control logic.
- nemesisFalseIf nemesis=true and file=foo.e, actually reads foo.e.N.0, foo.e.N.1, ... foo.e.N.N-1, where N = # CPUs, with NemesisIO.
Default:False
C++ Type:bool
Options:
Description:If nemesis=true and file=foo.e, actually reads foo.e.N.0, foo.e.N.1, ... foo.e.N.N-1, where N = # CPUs, with NemesisIO.
- construct_node_list_from_side_listTrueWhether or not to generate nodesets from the sidesets (usually a good idea).
Default:True
C++ Type:bool
Options:
Description:Whether or not to generate nodesets from the sidesets (usually a good idea).
- patch_size40The number of nodes to consider in the NearestNode neighborhood.
Default:40
C++ Type:unsigned int
Options:
Description:The number of nodes to consider in the NearestNode neighborhood.
Advanced Parameters
- partitionerdefaultSpecifies a mesh partitioner to use when splitting the mesh for a parallel computation.
Default:default
C++ Type:MooseEnum
Options:default metis parmetis linear centroid hilbert_sfc morton_sfc
Description:Specifies a mesh partitioner to use when splitting the mesh for a parallel computation.
- centroid_partitioner_directionSpecifies the sort direction if using the centroid partitioner. Available options: x, y, z, radial
C++ Type:MooseEnum
Options:x y z radial
Description:Specifies the sort direction if using the centroid partitioner. Available options: x, y, z, radial
Partitioning Parameters
Input Files
- modules/porous_flow/test/tests/dirackernels/bh07.i
- modules/porous_flow/examples/coal_mining/fine_with_fluid.i
- test/tests/kernels/ode/coupled_ode_td_var_ic_from_mesh.i
- modules/tensor_mechanics/test/tests/truss/truss_3d.i
- modules/porous_flow/test/tests/flux_limited_TVD_advection/fltvd_2D_trimesh.i
- modules/porous_flow/test/tests/desorption/desorption01.i
- modules/tensor_mechanics/test/tests/beam/action/2_block_common.i
- modules/navier_stokes/test/tests/step/step.i
- test/tests/auxkernels/solution_aux/aux_nonlinear_solution_adapt_xda.i
- modules/tensor_mechanics/examples/coal_mining/coarse.i
- test/tests/materials/output/output_multiple_files.i
- modules/combined/test/tests/beam_eigenstrain_transfer/master_uo_transfer.i
- modules/misc/test/tests/fracture_flow/single.i
- test/tests/outputs/oversample/over_sampling_test_file.i
- test/tests/materials/output/output_block_displaced.i
- modules/solid_mechanics/examples/bridge/bridge_large_strain.i
- modules/combined/doc/richards/user/excav/ex01.i
- test/tests/kernels/ode/coupled_ode_td_auxvar_ic_from_mesh.i
- modules/tensor_mechanics/test/tests/truss/truss_3d_action.i
- test/tests/auxkernels/solution_aux/solution_aux_exodus_interp.i
- modules/tensor_mechanics/test/tests/radial_disp_aux/cylinder_3d_cartesian.i
- modules/richards/test/tests/dirac/bh_fu_07.i
- modules/porous_flow/test/tests/desorption/desorption02.i
- modules/combined/test/tests/phase_field_fracture_viscoplastic/crack2d.i
- modules/richards/test/tests/theis/th_lumped_01.i
- modules/richards/test/tests/theis/th02.i
- modules/porous_flow/examples/flow_through_fractured_media/coarse_3D.i
- test/tests/mesh_modifiers/add_all_side_sets/simple.i
- test/tests/constraints/tied_value_constraint/tied_value_constraint_test.i
- modules/richards/test/tests/theis/th_lumped_22.i
- modules/porous_flow/examples/restart/gas_injection.i
- test/tests/mesh_modifiers/modifier_depend_order/modifier_depend_order.i
- test/tests/restrictable/api_test/block_restrictable.i
- test/tests/materials/output/output_block.i
- test/tests/materials/has_material/has_block_prop.i
- test/tests/auxkernels/solution_aux/solution_aux_exodus_direct.i
- modules/tensor_mechanics/test/tests/truss/truss_2d.i
- test/tests/mesh_modifiers/add_side_sets/cylinder_points.i
- modules/richards/test/tests/excav/ex01.i
- modules/porous_flow/test/tests/flux_limited_TVD_pflow/pffltvd_2D_trimesh.i
- modules/tensor_mechanics/test/tests/beam/action/2_block.i
- test/tests/auxkernels/solution_aux/solution_aux_exodus_interp_restart1.i
- modules/tensor_mechanics/test/tests/CylindricalRankTwoAux/test.i
- modules/combined/test/tests/poro_mechanics/borehole_highres.i
- modules/tensor_mechanics/test/tests/truss/truss_hex_action.i
- modules/richards/test/tests/theis/th01.i
- modules/tensor_mechanics/test/tests/beam/static/euler_finite_rot_y.i
- modules/combined/test/tests/phase_field_fracture/void2d_iso.i
- modules/heat_conduction/test/tests/meshed_gap_thermal_contact/meshed_annulus_thermal_contact.i
- test/tests/misc/line_source/line_source.i
- python/chigger/tests/input/mug_blocks.i
- test/tests/auxkernels/element_aux_boundary/element_aux_boundary.i
- test/tests/geomsearch/fake_block_to_boundary/fake_block_to_boundary.i
- test/tests/auxkernels/solution_aux/solution_aux_exodus_interp_direct.i
- modules/porous_flow/examples/flow_through_fractured_media/coarse.i
- modules/porous_flow/examples/flow_through_fractured_media/fine_thick_fracture_steady.i
- test/tests/materials/output/output_boundary.i
- modules/combined/examples/thermomechanics/circle_thermal_expansion_stress.i
- test/tests/mesh_modifiers/mesh_extruder/extrude_remap_layer1.i
- test/tests/mesh_modifiers/add_side_sets/cylinder_normals_fixed.i
- test/tests/materials/derivativematerialinterface/multiblock.i
- test/tests/restrictable/check_error/check_error.i
- test/tests/mesh_modifiers/add_side_sets/cylinder_normals.i
- modules/porous_flow/test/tests/aux_kernels/darcy_velocity_lower.i
- modules/richards/test/tests/theis/th21.i
- modules/richards/test/tests/theis/th_lumped_02.i
- modules/tensor_mechanics/examples/bridge/bridge_large_strain.i
- modules/tensor_mechanics/test/tests/mohr_coulomb/uni_axial2_planar.i
- test/tests/materials/output/block_via_outputs.i
- test/tests/ics/check_error/two_ics_on_same_block_global.i
- modules/tensor_mechanics/test/tests/finite_strain_elastic/elastic_rotation_test.i
- test/tests/controls/time_periods/constraints/constraints.i
- modules/tensor_mechanics/test/tests/mohr_coulomb/uni_axial2.i
- python/chigger/tests/simple/mug_blocks.i
- modules/functional_expansion_tools/examples/3D_volumetric_cylindrical/main.i
- modules/richards/test/tests/dirac/bh07.i
- modules/tensor_mechanics/test/tests/beam/static/euler_finite_rot_y_action.i
- modules/solid_mechanics/examples/bridge/bridge.i
- test/tests/mesh_modifiers/mesh_extruder/extrude_remap_layer2.i
- modules/porous_flow/examples/coal_mining/coarse_with_fluid.i
- modules/tensor_mechanics/test/tests/truss/truss_2d_action.i
- modules/richards/test/tests/excav/ex02.i
- test/tests/mesh_modifiers/sidesets_around_subdomain/around_normals.i
- modules/tensor_mechanics/examples/coal_mining/fine.i
- test/tests/outputs/oversample/oversample_file.i
- test/tests/variables/simple_restricted/simple_restricted.i
- test/tests/auxkernels/solution_aux/solution_aux_exodus_interp_restart2.i
- test/tests/geomsearch/2d_interior_boundary_penetration_locator/2d_interior_boundary_penetration_locator.i
- test/tests/materials/has_material/has_boundary_prop.i
- test/tests/ics/check_error/two_ics_on_same_block.i
- test/tests/mesh_modifiers/sidesets_between_subdomains/between.i
- test/tests/constraints/coupled_tied_value_constraint/coupled_tied_value_constraint.i
- modules/tensor_mechanics/test/tests/radial_disp_aux/cylinder_2d_cartesian.i
- test/tests/restart/duplicate_node/duplicate_node.i
- modules/functional_expansion_tools/examples/3D_volumetric_cylindrical/sub.i
- modules/tensor_mechanics/test/tests/coupled_pressure/coupled_pressure_test.i
- test/tests/auxkernels/solution_aux/solution_aux_direct.i
- test/tests/mesh_modifiers/mesh_extruder/extruder_angle.i
- modules/functional_expansion_tools/examples/3D_volumetric_cylindrical_subapp_mesh_refine/sub.i
- test/tests/mesh_modifiers/mesh_extruder/extruder_quad.i
- modules/functional_expansion_tools/examples/3D_volumetric_cylindrical_subapp_mesh_refine/main.i
- modules/tensor_mechanics/examples/bridge/bridge.i
- modules/richards/test/tests/dirac/bh27.i
- test/tests/mesh_modifiers/block_deleter/BlockDeleterTest11.i
- modules/tensor_mechanics/test/tests/mohr_coulomb/uni_axial3.i
- test/tests/mesh/mesh_only/mesh_only.i
- modules/combined/test/tests/chemical_reactions_richards/langmuir_jac3.i
- test/tests/mesh_modifiers/mesh_extruder/extruder_tri.i
- modules/combined/test/tests/glued_contact_constraint/glued_contact_constraint.i
- test/tests/geomsearch/patch_update_strategy/always.i
- modules/tensor_mechanics/test/tests/mohr_coulomb/uni_axial3_planar.i
- modules/richards/test/tests/dirac/bh_lumped_07.i
- modules/tensor_mechanics/test/tests/radial_disp_aux/sphere_3d_cartesian.i
- modules/tensor_mechanics/test/tests/beam/static/euler_finite_rot_z.i
- test/tests/auxkernels/solution_aux/solution_aux.i
- test/tests/misc/no_exodiff_map/no_exodiff_map.i
- test/tests/mesh_modifiers/smooth_mesh/mesh_smoother.i
- modules/richards/test/tests/dirac/bh_fu_08.i
- modules/chemical_reactions/test/tests/desorption/langmuir_lumping_problem.i
- test/tests/outputs/oversample/over_sampling_second_file.i
- test/tests/postprocessors/nodal_pps/nodal_extreme_pps_test.i
- test/tests/mesh_modifiers/sidesets_around_subdomain/around.i
- modules/misc/test/tests/fracture_flow/single_quick.i
- test/tests/mesh/patterned_mesh/mesh_tester.i
- modules/tensor_mechanics/test/tests/stress_recovery/stress_concentration/stress_concentration.i
- test/tests/misc/check_error/nodal_value_off_block.i
- modules/tensor_mechanics/test/tests/truss/truss_hex.i
- test/tests/bcs/periodic/auto_dir_repeated_id.i
- modules/tensor_mechanics/test/tests/radial_disp_aux/sphere_2d_axisymmetric.i
- test/tests/geomsearch/quadrature_penetration_locator/1d_quadrature_penetration.i
- test/tests/geomsearch/patch_update_strategy/never.i
- test/tests/restrictable/api_test/boundary_restrictable.i
- test/tests/geomsearch/patch_update_strategy/auto.i
- test/tests/auxkernels/solution_aux/build.i
- modules/combined/test/tests/poro_mechanics/borehole_lowres.i
- modules/heat_conduction/test/tests/meshed_gap_thermal_contact/meshed_gap_thermal_contact.i
- test/tests/restrictable/internal_side_user_object/internal_side_user_object.i
- test/tests/functions/solution_function/solution_function_exodus_test.i
- modules/tensor_mechanics/test/tests/pressure/pressure_test.i
- test/tests/functions/solution_function/solution_function_test.i
- modules/richards/test/tests/theis/th22.i
- modules/porous_flow/test/tests/aux_kernels/darcy_velocity_lower_2D.i
- modules/heat_conduction/test/tests/meshed_gap_thermal_contact/meshed_gap_thermal_contact_constant_conductance.i
- test/tests/auxkernels/element_quality_aux/element_quality_aux.i
- modules/porous_flow/test/tests/aux_kernels/darcy_velocity_lower_except.i
- test/tests/mesh_modifiers/add_all_side_sets/less_simple.i
- modules/porous_flow/examples/flow_through_fractured_media/fine_steady.i
- modules/chemical_reactions/test/tests/desorption/langmuir_jac2.i
modules/porous_flow/test/tests/dirackernels/bh07.i
# Comparison with analytical solution for cylindrically-symmetric situation
[Mesh]
type = FileMesh
file = bh07_input.e
[]
[GlobalParams]
PorousFlowDictator = dictator
[]
[Functions]
[./dts]
type = PiecewiseLinear
y = '1000 10000'
x = '100 1000'
[../]
[]
[Variables]
[./pp]
initial_condition = 1E7
[../]
[]
[Kernels]
[./mass0]
type = PorousFlowMassTimeDerivative
fluid_component = 0
variable = pp
[../]
[./fflux]
type = PorousFlowAdvectiveFlux
fluid_component = 0
variable = pp
gravity = '0 0 0'
[../]
[]
[BCs]
[./fix_outer]
type = DirichletBC
boundary = perimeter
variable = pp
value = 1E7
[../]
[]
[UserObjects]
[./dictator]
type = PorousFlowDictator
porous_flow_vars = 'pp'
number_fluid_phases = 1
number_fluid_components = 1
[../]
[./borehole_total_outflow_mass]
type = PorousFlowSumQuantity
[../]
[./pc]
type = PorousFlowCapillaryPressureVG
m = 0.8
alpha = 1e-5
[../]
[]
[Modules]
[./FluidProperties]
[./simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 2e9
viscosity = 1e-3
density0 = 1000
thermal_expansion = 0
[../]
[../]
[]
[Materials]
[./temperature]
type = PorousFlowTemperature
[../]
[./ppss]
type = PorousFlow1PhaseP
porepressure = pp
capillary_pressure = pc
[../]
[./massfrac]
type = PorousFlowMassFraction
[../]
[./simple_fluid]
type = PorousFlowSingleComponentFluid
fp = simple_fluid
phase = 0
[../]
[./porosity]
type = PorousFlowPorosityConst
porosity = 0.1
[../]
[./permeability]
type = PorousFlowPermeabilityConst
permeability = '1E-11 0 0 0 1E-11 0 0 0 1E-11'
[../]
[./relperm]
type = PorousFlowRelativePermeabilityFLAC
m = 2
phase = 0
[../]
[]
[DiracKernels]
[./bh]
type = PorousFlowPeacemanBorehole
variable = pp
SumQuantityUO = borehole_total_outflow_mass
point_file = bh07.bh
fluid_phase = 0
bottom_p_or_t = 0
unit_weight = '0 0 0'
use_mobility = true
re_constant = 0.1594 # use Chen and Zhang version
character = 2 # double the strength because bh07.bh only fills half the mesh
[../]
[]
[Postprocessors]
[./bh_report]
type = PorousFlowPlotQuantity
uo = borehole_total_outflow_mass
execute_on = 'initial timestep_end'
[../]
[./fluid_mass]
type = PorousFlowFluidMass
execute_on = 'initial timestep_end'
[../]
[]
[VectorPostprocessors]
[./pp]
type = LineValueSampler
variable = pp
start_point = '0 0 0'
end_point = '300 0 0'
sort_by = x
num_points = 300
execute_on = timestep_end
[../]
[]
[Preconditioning]
[./usual]
type = SMP
full = true
petsc_options = '-snes_converged_reason'
petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
[../]
[]
[Executioner]
type = Transient
end_time = 1E3
solve_type = NEWTON
[./TimeStepper]
# get only marginally better results for smaller time steps
type = FunctionDT
function = dts
[../]
[]
[Outputs]
file_base = bh07
[./along_line]
type = CSV
execute_on = final
[../]
[./exodus]
type = Exodus
execute_on = 'initial final'
[../]
[]
modules/porous_flow/examples/coal_mining/fine_with_fluid.i
#################################################################
#
# NOTE:
# The mesh for this model is too large for the MOOSE repository
# so is kept in the the large_media submodule
#
#################################################################
#
# Strata deformation and fluid flow aaround a coal mine - 3D model
#
# A "half model" is used. The mine is 400m deep and
# just the roof is studied (-400<=z<=0). The mining panel
# sits between 0<=x<=150, and 0<=y<=1000, so this simulates
# a coal panel that is 300m wide and 1000m long. The outer boundaries
# are 1km from the excavation boundaries.
#
# The excavation takes 0.5 years.
#
# The boundary conditions for this simulation are:
# - disp_x = 0 at x=0 and x=1150
# - disp_y = 0 at y=-1000 and y=1000
# - disp_z = 0 at z=-400, but there is a time-dependent
# Young modulus that simulates excavation
# - wc_x = 0 at y=-1000 and y=1000
# - wc_y = 0 at x=0 and x=1150
# - no flow at x=0, z=-400 and z=0
# - fixed porepressure at y=-1000, y=1000 and x=1150
# That is, rollers on the sides, free at top,
# and prescribed at bottom in the unexcavated portion.
#
# A single-phase unsaturated fluid is used.
#
# The small strain formulation is used.
#
# All stresses are measured in MPa, and time units are measured in years.
#
# The initial porepressure is hydrostatic with P=0 at z=0, so
# Porepressure ~ - 0.01*z MPa, where the fluid has density 1E3 kg/m^3 and
# gravity = = 10 m.s^-2 = 1E-5 MPa m^2/kg.
# To be more accurate, i use
# Porepressure = -bulk * log(1 + g*rho0*z/bulk)
# where bulk=2E3 MPa and rho0=1Ee kg/m^3.
# The initial stress is consistent with the weight force from undrained
# density 2500 kg/m^3, and fluid porepressure, and a Biot coefficient of 0.7, ie,
# stress_zz^effective = 0.025*z + 0.7 * initial_porepressure
# The maximum and minimum principal horizontal effective stresses are
# assumed to be equal to 0.8*stress_zz.
#
# Material properties:
# Young's modulus = 8 GPa
# Poisson's ratio = 0.25
# Cosserat layer thickness = 1 m
# Cosserat-joint normal stiffness = large
# Cosserat-joint shear stiffness = 1 GPa
# MC cohesion = 2 MPa
# MC friction angle = 35 deg
# MC dilation angle = 8 deg
# MC tensile strength = 1 MPa
# MC compressive strength = 100 MPa
# WeakPlane cohesion = 0.1 MPa
# WeakPlane friction angle = 30 deg
# WeakPlane dilation angle = 10 deg
# WeakPlane tensile strength = 0.1 MPa
# WeakPlane compressive strength = 100 MPa softening to 1 MPa at strain = 1
# Fluid density at zero porepressure = 1E3 kg/m^3
# Fluid bulk modulus = 2E3 MPa
# Fluid viscosity = 1.1E-3 Pa.s = 1.1E-9 MPa.s = 3.5E-17 MPa.year
#
[Mesh]
type = FileMesh
file = fine.e
[]
[GlobalParams]
perform_finite_strain_rotations = false
displacements = 'disp_x disp_y disp_z'
Cosserat_rotations = 'wc_x wc_y wc_z'
PorousFlowDictator = dictator
biot_coefficient = 0.7
[]
[MeshModifiers]
[./xmin]
type = SideSetsAroundSubdomain
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
new_boundary = xmin
normal = '-1 0 0'
[../]
[./xmax]
type = SideSetsAroundSubdomain
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
new_boundary = xmax
normal = '1 0 0'
[../]
[./ymin]
type = SideSetsAroundSubdomain
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
new_boundary = ymin
normal = '0 -1 0'
[../]
[./ymax]
type = SideSetsAroundSubdomain
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
new_boundary = ymax
normal = '0 1 0'
[../]
[./zmax]
type = SideSetsAroundSubdomain
block = 30
new_boundary = zmax
normal = '0 0 1'
[../]
[./zmin]
type = SideSetsAroundSubdomain
block = 2
new_boundary = zmin
normal = '0 0 -1'
[../]
[./excav]
type = SubdomainBoundingBox
depends_on = 'xmin xmax ymin ymax zmin zmax'
block_id = 1
bottom_left = '0 0 -400'
top_right = '150 1000 -397'
[../]
[./roof]
type = SideSetsBetweenSubdomains
master_block = 3
paired_block = 1
depends_on = excav
new_boundary = roof
[../]
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[./disp_z]
[../]
[./wc_x]
[../]
[./wc_y]
[../]
[./porepressure]
scaling = 1E-5
[../]
[]
[ICs]
[./porepressure]
type = FunctionIC
variable = porepressure
function = ini_pp
[../]
[]
[Kernels]
[./cx_elastic]
type = CosseratStressDivergenceTensors
use_displaced_mesh = false
variable = disp_x
component = 0
[../]
[./cy_elastic]
type = CosseratStressDivergenceTensors
use_displaced_mesh = false
variable = disp_y
component = 1
[../]
[./cz_elastic]
type = CosseratStressDivergenceTensors
use_displaced_mesh = false
variable = disp_z
component = 2
[../]
[./x_couple]
type = StressDivergenceTensors
use_displaced_mesh = false
variable = wc_x
displacements = 'wc_x wc_y wc_z'
component = 0
base_name = couple
[../]
[./y_couple]
type = StressDivergenceTensors
use_displaced_mesh = false
variable = wc_y
displacements = 'wc_x wc_y wc_z'
component = 1
base_name = couple
[../]
[./x_moment]
type = MomentBalancing
use_displaced_mesh = false
variable = wc_x
component = 0
[../]
[./y_moment]
type = MomentBalancing
use_displaced_mesh = false
variable = wc_y
component = 1
[../]
[./gravity]
type = Gravity
use_displaced_mesh = false
variable = disp_z
value = -10E-6 # remember this is in MPa
[../]
[./poro_x]
type = PorousFlowEffectiveStressCoupling
use_displaced_mesh = false
variable = disp_x
component = 0
[../]
[./poro_y]
type = PorousFlowEffectiveStressCoupling
use_displaced_mesh = false
variable = disp_y
component = 1
[../]
[./poro_z]
type = PorousFlowEffectiveStressCoupling
use_displaced_mesh = false
component = 2
variable = disp_z
[../]
[./poro_vol_exp]
type = PorousFlowMassVolumetricExpansion
use_displaced_mesh = false
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
variable = porepressure
fluid_component = 0
[../]
[./mass0]
type = PorousFlowMassTimeDerivative
use_displaced_mesh = false
fluid_component = 0
variable = porepressure
[../]
[./flux]
type = PorousFlowAdvectiveFlux
use_displaced_mesh = false
variable = porepressure
gravity = '0 0 -10E-6'
fluid_component = 0
[../]
[]
[AuxVariables]
[./saturation]
order = CONSTANT
family = MONOMIAL
[../]
[./darcy_x]
order = CONSTANT
family = MONOMIAL
[../]
[./darcy_y]
order = CONSTANT
family = MONOMIAL
[../]
[./darcy_z]
order = CONSTANT
family = MONOMIAL
[../]
[./porosity]
order = CONSTANT
family = MONOMIAL
[../]
[./wc_z]
[../]
[./stress_xx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xz]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yz]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zz]
order = CONSTANT
family = MONOMIAL
[../]
[./total_strain_xx]
order = CONSTANT
family = MONOMIAL
[../]
[./total_strain_xy]
order = CONSTANT
family = MONOMIAL
[../]
[./total_strain_xz]
order = CONSTANT
family = MONOMIAL
[../]
[./total_strain_yx]
order = CONSTANT
family = MONOMIAL
[../]
[./total_strain_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./total_strain_yz]
order = CONSTANT
family = MONOMIAL
[../]
[./total_strain_zx]
order = CONSTANT
family = MONOMIAL
[../]
[./total_strain_zy]
order = CONSTANT
family = MONOMIAL
[../]
[./total_strain_zz]
order = CONSTANT
family = MONOMIAL
[../]
[./perm_xx]
order = CONSTANT
family = MONOMIAL
[../]
[./perm_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./perm_zz]
order = CONSTANT
family = MONOMIAL
[../]
[./mc_shear]
order = CONSTANT
family = MONOMIAL
[../]
[./mc_tensile]
order = CONSTANT
family = MONOMIAL
[../]
[./wp_shear]
order = CONSTANT
family = MONOMIAL
[../]
[./wp_tensile]
order = CONSTANT
family = MONOMIAL
[../]
[./wp_shear_f]
order = CONSTANT
family = MONOMIAL
[../]
[./wp_tensile_f]
order = CONSTANT
family = MONOMIAL
[../]
[./mc_shear_f]
order = CONSTANT
family = MONOMIAL
[../]
[./mc_tensile_f]
order = CONSTANT
family = MONOMIAL
[../]
[]
[AuxKernels]
[./saturation_water]
type = PorousFlowPropertyAux
variable = saturation
property = saturation
phase = 0
execute_on = timestep_end
[../]
[./darcy_x]
type = PorousFlowDarcyVelocityComponent
variable = darcy_x
gravity = '0 0 -10E-6'
component = x
[../]
[./darcy_y]
type = PorousFlowDarcyVelocityComponent
variable = darcy_y
gravity = '0 0 -10E-6'
component = y
[../]
[./darcy_z]
type = PorousFlowDarcyVelocityComponent
variable = darcy_z
gravity = '0 0 -10E-6'
component = z
[../]
[./porosity]
type = PorousFlowPropertyAux
property = porosity
variable = porosity
execute_on = timestep_end
[../]
[./stress_xx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xx
index_i = 0
index_j = 0
execute_on = timestep_end
[../]
[./stress_xy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xy
index_i = 0
index_j = 1
execute_on = timestep_end
[../]
[./stress_xz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xz
index_i = 0
index_j = 2
execute_on = timestep_end
[../]
[./stress_yx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yx
index_i = 1
index_j = 0
execute_on = timestep_end
[../]
[./stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
execute_on = timestep_end
[../]
[./stress_yz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yz
index_i = 1
index_j = 2
execute_on = timestep_end
[../]
[./stress_zx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zx
index_i = 2
index_j = 0
execute_on = timestep_end
[../]
[./stress_zy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zy
index_i = 2
index_j = 1
execute_on = timestep_end
[../]
[./stress_zz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zz
index_i = 2
index_j = 2
execute_on = timestep_end
[../]
[./total_strain_xx]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_xx
index_i = 0
index_j = 0
execute_on = timestep_end
[../]
[./total_strain_xy]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_xy
index_i = 0
index_j = 1
execute_on = timestep_end
[../]
[./total_strain_xz]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_xz
index_i = 0
index_j = 2
execute_on = timestep_end
[../]
[./total_strain_yx]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_yx
index_i = 1
index_j = 0
execute_on = timestep_end
[../]
[./total_strain_yy]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_yy
index_i = 1
index_j = 1
execute_on = timestep_end
[../]
[./total_strain_yz]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_yz
index_i = 1
index_j = 2
execute_on = timestep_end
[../]
[./total_strain_zx]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_zx
index_i = 2
index_j = 0
execute_on = timestep_end
[../]
[./total_strain_zy]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_zy
index_i = 2
index_j = 1
execute_on = timestep_end
[../]
[./total_strain_zz]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_zz
index_i = 2
index_j = 2
execute_on = timestep_end
[../]
[./perm_xx]
type = PorousFlowPropertyAux
property = permeability
variable = perm_xx
row = 0
column = 0
execute_on = timestep_end
[../]
[./perm_yy]
type = PorousFlowPropertyAux
property = permeability
variable = perm_yy
row = 1
column = 1
execute_on = timestep_end
[../]
[./perm_zz]
type = PorousFlowPropertyAux
property = permeability
variable = perm_zz
row = 2
column = 2
execute_on = timestep_end
[../]
[./mc_shear]
type = MaterialStdVectorAux
index = 0
property = mc_plastic_internal_parameter
variable = mc_shear
execute_on = timestep_end
[../]
[./mc_tensile]
type = MaterialStdVectorAux
index = 1
property = mc_plastic_internal_parameter
variable = mc_tensile
execute_on = timestep_end
[../]
[./wp_shear]
type = MaterialStdVectorAux
index = 0
property = wp_plastic_internal_parameter
variable = wp_shear
execute_on = timestep_end
[../]
[./wp_tensile]
type = MaterialStdVectorAux
index = 1
property = wp_plastic_internal_parameter
variable = wp_tensile
execute_on = timestep_end
[../]
[./mc_shear_f]
type = MaterialStdVectorAux
index = 6
property = mc_plastic_yield_function
variable = mc_shear_f
execute_on = timestep_end
[../]
[./mc_tensile_f]
type = MaterialStdVectorAux
index = 0
property = mc_plastic_yield_function
variable = mc_tensile_f
execute_on = timestep_end
[../]
[./wp_shear_f]
type = MaterialStdVectorAux
index = 0
property = wp_plastic_yield_function
variable = wp_shear_f
execute_on = timestep_end
[../]
[./wp_tensile_f]
type = MaterialStdVectorAux
index = 1
property = wp_plastic_yield_function
variable = wp_tensile_f
execute_on = timestep_end
[../]
[]
[BCs]
[./no_x]
type = PresetBC
variable = disp_x
boundary = 'xmin xmax'
value = 0.0
[../]
[./no_y]
type = PresetBC
variable = disp_y
boundary = 'ymin ymax'
value = 0.0
[../]
[./no_z]
type = PresetBC
variable = disp_z
boundary = zmin
value = 0.0
[../]
[./no_wc_x]
type = PresetBC
variable = wc_x
boundary = 'ymin ymax'
value = 0.0
[../]
[./no_wc_y]
type = PresetBC
variable = wc_y
boundary = 'xmin xmax'
value = 0.0
[../]
[./fix_porepressure]
type = FunctionPresetBC
variable = porepressure
boundary = 'ymin ymax xmax'
function = ini_pp
[../]
[./roof_porepressure]
type = PorousFlowPiecewiseLinearSink
variable = porepressure
pt_vals = '-1E3 1E3'
multipliers = '-1 1'
fluid_phase = 0
flux_function = roof_conductance
boundary = roof
[../]
[./roof]
type = StickyBC
variable = disp_z
min_value = -3.0
boundary = roof
[../]
[]
[Functions]
[./ini_pp]
type = ParsedFunction
vars = 'bulk p0 g rho0'
vals = '2E3 0.0 1E-5 1E3'
value = '-bulk*log(exp(-p0/bulk)+g*rho0*z/bulk)'
[../]
[./ini_xx]
type = ParsedFunction
vars = 'bulk p0 g rho0 biot'
vals = '2E3 0.0 1E-5 1E3 0.7'
value = '0.8*(2500*10E-6*z+biot*(-bulk*log(exp(-p0/bulk)+g*rho0*z/bulk)))'
[../]
[./ini_zz]
type = ParsedFunction
vars = 'bulk p0 g rho0 biot'
vals = '2E3 0.0 1E-5 1E3 0.7'
value = '2500*10E-6*z+biot*(-bulk*log(exp(-p0/bulk)+g*rho0*z/bulk))'
[../]
[./excav_sideways]
type = ParsedFunction
vars = 'end_t ymin ymax minval maxval slope'
vals = '0.5 0 1000.0 1E-9 1 10'
# excavation face at ymin+(ymax-ymin)*min(t/end_t,1)
# slope is the distance over which the modulus reduces from maxval to minval
value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),minval,if(y<ymin+(ymax-ymin)*min(t/end_t,1)+slope,minval+(maxval-minval)*(y-(ymin+(ymax-ymin)*min(t/end_t,1)))/slope,maxval))'
[../]
[./density_sideways]
type = ParsedFunction
vars = 'end_t ymin ymax minval maxval'
vals = '0.5 0 1000.0 0 2500'
value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),minval,maxval)'
[../]
[./roof_conductance]
type = ParsedFunction
vars = 'end_t ymin ymax maxval minval'
vals = '0.5 0 1000.0 1E7 0'
value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),maxval,minval)'
[../]
[]
[UserObjects]
[./dictator]
type = PorousFlowDictator
porous_flow_vars = 'porepressure disp_x disp_y disp_z'
number_fluid_phases = 1
number_fluid_components = 1
[../]
[./pc]
type = PorousFlowCapillaryPressureVG
m = 0.5
alpha = 1 # MPa^-1
[../]
[./mc_coh_strong_harden]
type = TensorMechanicsHardeningExponential
value_0 = 1.99 # MPa
value_residual = 2.01 # MPa
rate = 1.0
[../]
[./mc_fric]
type = TensorMechanicsHardeningConstant
value = 0.61 # 35deg
[../]
[./mc_dil]
type = TensorMechanicsHardeningConstant
value = 0.15 # 8deg
[../]
[./mc_tensile_str_strong_harden]
type = TensorMechanicsHardeningExponential
value_0 = 1.0 # MPa
value_residual = 1.0 # MPa
rate = 1.0
[../]
[./mc_compressive_str]
type = TensorMechanicsHardeningCubic
value_0 = 100 # Large!
value_residual = 100
internal_limit = 0.1
[../]
[./wp_coh_harden]
type = TensorMechanicsHardeningCubic
value_0 = 0.05
value_residual = 0.05
internal_limit = 10
[../]
[./wp_tan_fric]
type = TensorMechanicsHardeningConstant
value = 0.26 # 15deg
[../]
[./wp_tan_dil]
type = TensorMechanicsHardeningConstant
value = 0.18 # 10deg
[../]
[./wp_tensile_str_harden]
type = TensorMechanicsHardeningCubic
value_0 = 0.05
value_residual = 0.05
internal_limit = 10
[../]
[./wp_compressive_str_soften]
type = TensorMechanicsHardeningCubic
value_0 = 100
value_residual = 1
internal_limit = 1.0
[../]
[]
[Modules]
[./FluidProperties]
[./simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 2E3
density0 = 1000
thermal_expansion = 0
viscosity = 3.5E-17
[../]
[../]
[]
[Materials]
[./temperature]
type = PorousFlowTemperature
[../]
[./eff_fluid_pressure]
type = PorousFlowEffectiveFluidPressure
[../]
[./vol_strain]
type = PorousFlowVolumetricStrain
[../]
[./ppss]
type = PorousFlow1PhaseP
porepressure = porepressure
capillary_pressure = pc
[../]
[./massfrac]
type = PorousFlowMassFraction
[../]
[./simple_fluid]
type = PorousFlowSingleComponentFluid
fp = simple_fluid
phase = 0
[../]
[./porosity_for_aux]
type = PorousFlowPorosity
at_nodes = false
fluid = true
mechanical = true
ensure_positive = true
porosity_zero = 0.02
solid_bulk = 5.3333E3
[../]
[./porosity_bulk]
type = PorousFlowPorosity
fluid = true
mechanical = true
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
ensure_positive = true
porosity_zero = 0.02
solid_bulk = 5.3333E3
[../]
[./porosity_excav]
type = PorousFlowPorosityConst
block = 1
porosity = 1.0
[../]
[./permeability_bulk]
type = PorousFlowPermeabilityKozenyCarman
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
poroperm_function = kozeny_carman_phi0
k0 = 1E-15
phi0 = 0.02
n = 2
m = 2
[../]
[./permeability_excav]
type = PorousFlowPermeabilityConst
block = 1
permeability = '0 0 0 0 0 0 0 0 0'
[../]
[./relperm]
type = PorousFlowRelativePermeabilityCorey
n = 4
s_res = 0.4
sum_s_res = 0.4
phase = 0
[../]
[./elasticity_tensor_0]
type = ComputeLayeredCosseratElasticityTensor
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
young = 8E3 # MPa
poisson = 0.25
layer_thickness = 1.0
joint_normal_stiffness = 1E9 # huge
joint_shear_stiffness = 1E3 # MPa
[../]
[./elasticity_tensor_1]
type = ComputeLayeredCosseratElasticityTensor
block = 1
young = 8E3 # MPa
poisson = 0.25
layer_thickness = 1.0
joint_normal_stiffness = 1E9 # huge
joint_shear_stiffness = 1E3 # MPa
elasticity_tensor_prefactor = excav_sideways
[../]
[./strain]
type = ComputeCosseratIncrementalSmallStrain
eigenstrain_names = ini_stress
[../]
[./ini_stress]
type = ComputeEigenstrainFromInitialStress
eigenstrain_name = ini_stress
initial_stress = 'ini_xx 0 0 0 ini_xx 0 0 0 ini_zz'
[../]
[./stress_0]
type = ComputeMultipleInelasticCosseratStress
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
inelastic_models = 'mc wp'
cycle_models = true
relative_tolerance = 2.0
absolute_tolerance = 1E6
max_iterations = 1
tangent_operator = nonlinear
perform_finite_strain_rotations = false
[../]
[./stress_1]
type = ComputeMultipleInelasticCosseratStress
block = 1
inelastic_models = ''
relative_tolerance = 2.0
absolute_tolerance = 1E6
max_iterations = 1
tangent_operator = nonlinear
perform_finite_strain_rotations = false
[../]
[./mc]
type = CappedMohrCoulombCosseratStressUpdate
warn_about_precision_loss = false
host_youngs_modulus = 8E3
host_poissons_ratio = 0.25
base_name = mc
tensile_strength = mc_tensile_str_strong_harden
compressive_strength = mc_compressive_str
cohesion = mc_coh_strong_harden
friction_angle = mc_fric
dilation_angle = mc_dil
max_NR_iterations = 100000
smoothing_tol = 0.1 # MPa # Must be linked to cohesion
yield_function_tol = 1E-9 # MPa. this is essentially the lowest possible without lots of precision loss
perfect_guess = true
min_step_size = 1.0
[../]
[./wp]
type = CappedWeakPlaneCosseratStressUpdate
warn_about_precision_loss = false
base_name = wp
cohesion = wp_coh_harden
tan_friction_angle = wp_tan_fric
tan_dilation_angle = wp_tan_dil
tensile_strength = wp_tensile_str_harden
compressive_strength = wp_compressive_str_soften
max_NR_iterations = 10000
tip_smoother = 0.05
smoothing_tol = 0.05 # MPa # Note, this must be tied to cohesion, otherwise get no possible return at cone apex
yield_function_tol = 1E-11 # MPa. this is essentially the lowest possible without lots of precision loss
perfect_guess = true
min_step_size = 1.0E-3
[../]
[./undrained_density_0]
type = GenericConstantMaterial
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
prop_names = density
prop_values = 2500
[../]
[./undrained_density_1]
type = GenericFunctionMaterial
block = 1
prop_names = density
prop_values = density_sideways
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[]
[]
[Postprocessors]
[./min_roof_disp]
type = NodalExtremeValue
boundary = roof
value_type = min
variable = disp_z
[../]
[./min_roof_pp]
type = NodalExtremeValue
boundary = roof
value_type = min
variable = porepressure
[../]
[./min_surface_disp]
type = NodalExtremeValue
boundary = zmax
value_type = min
variable = disp_z
[../]
[./min_surface_pp]
type = NodalExtremeValue
boundary = zmax
value_type = min
variable = porepressure
[../]
[./max_perm_zz]
type = ElementExtremeValue
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
variable = perm_zz
[../]
[]
[Executioner]
type = Transient
solve_type = 'NEWTON'
petsc_options = '-snes_converged_reason'
# best overall
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
# best if you don't have mumps:
#petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
#petsc_options_value = ' asm 2 lu gmres 200'
# very basic:
#petsc_options_iname = '-pc_type -ksp_type -ksp_gmres_restart'
#petsc_options_value = ' bjacobi gmres 200'
line_search = bt
nl_abs_tol = 1e-3
nl_rel_tol = 1e-5
l_max_its = 200
nl_max_its = 30
start_time = 0.0
dt = 0.0025
end_time = 0.5
[]
[Outputs]
interval = 1
print_linear_residuals = true
exodus = true
csv = true
console = true
[]
test/tests/kernels/ode/coupled_ode_td_var_ic_from_mesh.i
[Mesh]
type = FileMesh
file = 'coupled_ode_td_out.e'
[]
[Variables]
[./f]
family = SCALAR
order = FIRST
initial_from_file_var = f
initial_from_file_timestep = 'LATEST'
[../]
[./f_times_mult]
family = SCALAR
order = FIRST
initial_from_file_var = f_times_mult
initial_from_file_timestep = 'LATEST'
[../]
[]
[ScalarKernels]
[./dT]
type = CoupledODETimeDerivative
variable = f
v = f_times_mult
[../]
[./src]
type = ParsedODEKernel
variable = f
function = '-1'
[../]
[./f_times_mult_1]
type = ParsedODEKernel
variable = f_times_mult
function = 'f_times_mult'
[../]
[./f_times_mult_2]
type = ParsedODEKernel
variable = f_times_mult
function = '-f * g'
args = 'f g'
[../]
[]
[AuxVariables]
[./g]
family = SCALAR
order = FIRST
[../]
[]
[Functions]
[./function_g]
type = ParsedFunction
value = '(1 + t)'
[../]
[]
[AuxScalarKernels]
[./set_g]
type = FunctionScalarAux
function = function_g
variable = g
execute_on = 'linear initial'
[../]
[]
[Postprocessors]
[./f]
type = ScalarVariable
variable = f
execute_on = 'initial timestep_end'
[../]
[]
[Executioner]
type = Transient
dt = 1
num_steps = 3
nl_abs_tol = 1e-9
[]
[Outputs]
csv = true
[]
modules/tensor_mechanics/test/tests/truss/truss_3d.i
[Mesh]
type = FileMesh
file = truss_3d.e
displacements = 'disp_x disp_y disp_z'
[]
[Variables]
[./disp_x]
order = FIRST
family = LAGRANGE
[../]
[./disp_y]
order = FIRST
family = LAGRANGE
[../]
[./disp_z]
order = FIRST
family = LAGRANGE
[../]
[]
[AuxVariables]
[./axial_stress]
order = CONSTANT
family = MONOMIAL
[../]
[./e_over_l]
order = CONSTANT
family = MONOMIAL
[../]
[./area]
order = CONSTANT
family = MONOMIAL
# initial_condition = 1.0
[../]
[./react_x]
order = FIRST
family = LAGRANGE
[../]
[./react_y]
order = FIRST
family = LAGRANGE
[../]
[./react_z]
order = FIRST
family = LAGRANGE
[../]
[]
[Functions]
[./x2]
type = PiecewiseLinear
x = '0 1 2 3'
y = '0 .5 1 1'
[../]
[./y2]
type = PiecewiseLinear
x = '0 1 2 3'
y = '0 0 .5 1'
[../]
[]
[BCs]
[./fixx1]
type = DirichletBC
variable = disp_x
boundary = 1
value = 0.0
[../]
[./fixx2]
type = FunctionDirichletBC
variable = disp_x
boundary = 2
function = x2
[../]
[./fixx3]
type = DirichletBC
variable = disp_x
boundary = 3
value = 0.0
[../]
[./fixy1]
type = DirichletBC
variable = disp_y
boundary = 1
value = 0
[../]
[./fixy2]
type = FunctionDirichletBC
variable = disp_y
boundary = 2
function = y2
[../]
[./fixy3]
type = DirichletBC
variable = disp_y
boundary = 3
value = 0
[../]
[./fixz1]
type = DirichletBC
variable = disp_z
boundary = 1
value = 0
[../]
[./fixz2]
type = DirichletBC
variable = disp_z
boundary = 2
value = 0
[../]
[./fixz3]
type = DirichletBC
variable = disp_z
boundary = 3
value = 0
[../]
[]
[AuxKernels]
[./axial_stress]
type = MaterialRealAux
block = '1 2'
property = axial_stress
variable = axial_stress
[../]
[./e_over_l]
type = MaterialRealAux
block = '1 2'
property = e_over_l
variable = e_over_l
[../]
[./area]
type = ConstantAux
block = '1 2'
variable = area
value = 1.0
execute_on = 'initial timestep_begin'
[../]
[]
[Executioner]
type = Transient
solve_type = PJFNK
petsc_options_iname = '-pc_type -ksp_gmres_restart'
petsc_options_value = 'jacobi 101'
line_search = 'none'
nl_max_its = 15
nl_rel_tol = 1e-6
nl_abs_tol = 1e-10
dt = 1
num_steps = 3
end_time = 3
[]
[Kernels]
[./solid_x]
type = StressDivergenceTensorsTruss
block = '1 2'
displacements = 'disp_x disp_y disp_z'
component = 0
variable = disp_x
area = area
save_in = react_x
[../]
[./solid_y]
type = StressDivergenceTensorsTruss
block = '1 2'
displacements = 'disp_x disp_y disp_z'
component = 1
variable = disp_y
area = area
save_in = react_y
[../]
[./solid_z]
type = StressDivergenceTensorsTruss
block = '1 2'
displacements = 'disp_x disp_y disp_z'
component = 2
variable = disp_z
area = area
save_in = react_z
[../]
[]
[Materials]
[./linelast]
type = LinearElasticTruss
block = '1 2'
youngs_modulus = 1e6
displacements = 'disp_x disp_y disp_z'
[../]
[]
[Outputs]
exodus = true
[]
modules/porous_flow/test/tests/flux_limited_TVD_advection/fltvd_2D_trimesh.i
# Using Flux-Limited TVD Advection ala Kuzmin and Turek, with antidiffusion from superbee flux limiting
# 2D version
[Mesh]
type = FileMesh
file = trimesh.msh
[]
[GlobalParams]
block = '50'
[]
[Variables]
[./tracer]
[../]
[]
[ICs]
[./tracer]
type = FunctionIC
variable = tracer
function = 'if(x<0.1,0,if(x>0.305,0,1))'
[../]
[]
[Kernels]
[./mass_dot]
type = MassLumpedTimeDerivative
variable = tracer
[../]
[./flux]
type = FluxLimitedTVDAdvection
variable = tracer
advective_flux_calculator = fluo
[../]
[]
[UserObjects]
[./fluo]
type = AdvectiveFluxCalculatorConstantVelocity
flux_limiter_type = superbee
u = tracer
velocity = '0.1 0 0'
[../]
[]
[BCs]
[./no_tracer_on_left]
type = PresetBC
variable = tracer
value = 0
boundary = left
[../]
[./remove_tracer]
# Ideally, an OutflowBC would be used, but that does not exist in the framework
# In 1D VacuumBC is the same as OutflowBC, with the alpha parameter being twice the velocity
type = VacuumBC
boundary = right
alpha = 0.2 # 2 * velocity
variable = tracer
[../]
[]
[Preconditioning]
active = basic
[./basic]
type = SMP
full = true
petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = ' asm lu NONZERO 2'
[../]
[./preferred_but_might_not_be_installed]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
[../]
[]
[VectorPostprocessors]
[./tracer]
type = LineValueSampler
start_point = '0 0 0'
end_point = '1 0.04 0'
num_points = 101
sort_by = x
variable = tracer
[../]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 6
dt = 6E-2
timestep_tolerance = 1E-3
[]
[Outputs]
csv = true
print_linear_residuals = false
execute_on = final
[]
modules/porous_flow/test/tests/desorption/desorption01.i
# Illustrates desorption works as planned.
#
# A mesh contains 3 elements in arranged in a line.
# The central element contains desorped fluid.
# This desorps to the nodes of that element.
#
# In the central element, of volume V, the following occurs.
# The initial porepressure=1, and concentration=1.
# The initial mass of fluid is
# V * (2 * porosity * density + (1 - porosity) * concentration)
# = V * 1.289547
# Notice the factor of "2" in the porespace contribution:
# it is because the porepressure is evaluated at nodes, so
# the nodes on the exterior of the centre_block have
# nodal-volume contributions from the elements not in centre_block.
#
# The mass-conservation equation reads
# 2 * porosity * density + (1 - porosity) * concentration = 1.289547
# and the desorption equation reads
# d( (1-porosity)C )/dt = - (1/tau)(C - dens_L * P / (P_L + P))
# where C = concentration, P = porepressure, P_L = Langmuir pressure
# dens_L = Langmuir density, tau = time constant.
# Using the mass-conservation equation in the desorption equation
# yields a nonlinear equation of P. For dt=1, and the numerical values
# given below this yields
# P = 1.83697
# and
# C = 0.676616
# The desired result is achieved by MOOSE
[Mesh]
type = FileMesh
file = three_eles.e
[]
[GlobalParams]
PorousFlowDictator = dictator
[]
[Variables]
[./pp]
[../]
[./conc]
family = MONOMIAL
order = CONSTANT
block = centre_block
[../]
[]
[ICs]
[./p_ic]
type = ConstantIC
variable = pp
value = 1.0
[../]
[./conc_ic]
type = ConstantIC
variable = conc
value = 1.0
block = centre_block
[../]
[]
[Kernels]
[./porespace_mass_dot]
type = PorousFlowMassTimeDerivative
fluid_component = 0
variable = pp
[../]
[./desorped_mass_dot]
type = PorousFlowDesorpedMassTimeDerivative
block = centre_block
conc_var = conc
variable = pp
[../]
[./desorped_mass_dot_conc_var]
type = PorousFlowDesorpedMassTimeDerivative
block = centre_block
conc_var = conc
variable = conc
[../]
[./flow_from_matrix]
type = DesorptionFromMatrix
block = centre_block
variable = conc
pressure_var = pp
[../]
[]
[UserObjects]
[./dictator]
type = PorousFlowDictator
porous_flow_vars = 'pp conc'
number_fluid_phases = 1
number_fluid_components = 1
[../]
[./pc]
type = PorousFlowCapillaryPressureVG
m = 0.5
alpha = 1
[../]
[]
[Modules]
[./FluidProperties]
[./simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 1.5
viscosity = 1
density0 = 1
thermal_expansion = 0
[../]
[../]
[]
[Materials]
[./lang_stuff]
type = LangmuirMaterial
block = centre_block
one_over_adsorption_time_const = 10.0
one_over_desorption_time_const = 10.0
langmuir_density = 1
langmuir_pressure = 1
pressure_var = pp
conc_var = conc
[../]
[./temperature]
type = PorousFlowTemperature
[../]
[./ppss]
type = PorousFlow1PhaseP
porepressure = pp
capillary_pressure = pc
[../]
[./massfrac]
type = PorousFlowMassFraction
[../]
[./simple_fluid]
type = PorousFlowSingleComponentFluid
fp = simple_fluid
phase = 0
[../]
[./porosity]
type = PorousFlowPorosityConst
porosity = 0.1
[../]
[]
[Preconditioning]
[./andy]
type = SMP
full = true
petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
[../]
[]
[Executioner]
type = Transient
solve_type = Newton
dt = 1
end_time = 1
[]
[Outputs]
exodus = true
[]
modules/tensor_mechanics/test/tests/beam/action/2_block_common.i
# Test for LineElementAction on multiple blocks by placing parameters
# common to all blocks outside of the individual action blocks
# 2 beams of length 1m are fixed at one end and a force of 1e-4 N
# is applied at the other end of the beams. Beam 1 is in block 1
# and beam 2 is in block 2. All the material properties for the two
# beams are identical. The moment of inertia of beam 2 is twice that
# of beam 1.
# Since the end displacement of a cantilever beam is inversely proportional
# to the moment of inertia, the y displacement at the end of beam 1 should be twice
# that of beam 2.
[Mesh]
type = FileMesh
file = 2_beam_block.e
displacements = 'disp_x disp_y disp_z'
[]
[BCs]
[./fixx1]
type = DirichletBC
variable = disp_x
boundary = 1
value = 0.0
[../]
[./fixy1]
type = DirichletBC
variable = disp_y
boundary = 1
value = 0.0
[../]
[./fixz1]
type = DirichletBC
variable = disp_z
boundary = 1
value = 0.0
[../]
[./fixr1]
type = DirichletBC
variable = rot_x
boundary = 1
value = 0.0
[../]
[./fixr2]
type = DirichletBC
variable = rot_y
boundary = 1
value = 0.0
[../]
[./fixr3]
type = DirichletBC
variable = rot_z
boundary = 1
value = 0.0
[../]
[]
[NodalKernels]
[./force_1]
type = ConstantRate
variable = disp_y
boundary = 2
rate = 1e-4
[../]
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
solve_type = PJFNK
line_search = 'none'
nl_max_its = 15
nl_rel_tol = 1e-10
nl_abs_tol = 1e-8
dt = 1
dtmin = 1
end_time = 2
[]
[Modules/TensorMechanics/LineElementMaster]
# parameters common to all blocks
add_variables = true
displacements = 'disp_x disp_y disp_z'
rotations = 'rot_x rot_y rot_z'
# Geometry parameters
area = 0.5
y_orientation = '0.0 1.0 0.0'
[./block_1]
Iy = 1e-5
Iz = 1e-5
block = 1
[../]
[./block_2]
Iy = 2e-5
Iz = 2e-5
block = 2
[../]
[]
[Materials]
[./stress]
type = ComputeBeamResultants
block = '1 2'
[../]
[./elasticity_1]
type = ComputeElasticityBeam
youngs_modulus = 2.0
poissons_ratio = 0.3
shear_coefficient = 1.0
block = '1 2'
[../]
[]
[Postprocessors]
[./disp_y_1]
type = PointValue
point = '1.0 0.0 0.0'
variable = disp_y
[../]
[./disp_y_2]
type = PointValue
point = '1.0 1.0 0.0'
variable = disp_y
[../]
[]
[Outputs]
file_base = '2_block_out'
exodus = true
[]
modules/navier_stokes/test/tests/step/step.i
# Navier-Stokes (or Euler) flow of an ideal gas over a step.
#
# Note: this problem is not currently a regression test for the
# Navier-Stokes module since it is in some sense ill-posed. As
# discussed in [0], the sharp corner of the step (both forward and
# backward-facing) introduces a singularity in the first derivative of
# the velocity and pressure fields, and therefore produces large
# numerical errors in the neighborhood of these points. Physically,
# this numerical error can be interpreted as causing an artificial
# "boundary layer" to form just above the step, as well as a spurious
# production of entropy even though the flow remains subsonic.
# Nevertheless, the forward-facing step problem in particular remains
# a challenging and well-document test problem for flow solvers, and
# this input file is included to help facilitate its development and
# employment by users of the module.
#
# [0]: Woodward and Colella, "The numerical simulation of
# two-dimenstional fluid flow with strong shocks," Journal of
# Computational Physics 54(1), pp. 115-173, 1984
[Mesh]
type = FileMesh
file = step.e
dim = 2
# uniform_refine = 3
[]
[Modules]
[./FluidProperties]
[./ideal_gas]
type = IdealGasFluidProperties
gamma = 1.4
R = 287
[../]
[../]
[./NavierStokes]
[./Variables]
# 'rho rhou rhov rhoE'
scaling = '1. 1. 1. 9.869232667160121e-6'
family = LAGRANGE
order = FIRST
[../]
[./ICs]
initial_pressure = 101325.
initial_temperature = 300.
initial_velocity = '173.594354746921 0 0' # Mach 0.5: = 0.5*sqrt(gamma*R*T)
fluid_properties = ideal_gas
[../]
[./Kernels]
fluid_properties = ideal_gas
[../]
[./BCs]
[./inlet]
type = NSWeakStagnationInletBC
boundary = 'left'
stagnation_pressure = 120192.995549849 # Pa, Mach=0.5 at 1 atm
stagnation_temperature = 315 # K, Mach=0.5 at 1 atm
sx = 1.
sy = 0.
fluid_properties = ideal_gas
[../]
[./solid_walls]
type = NSNoPenetrationBC
boundary = 'top bottom step_top step_left step_right'
fluid_properties = ideal_gas
[../]
[./outlet]
type = NSStaticPressureOutletBC
boundary = 'right'
specified_pressure = 101325 # Pa
fluid_properties = ideal_gas
[../]
[../]
[../]
[]
[Materials]
[./fluid]
type = Air
block = 1
rho = rho
rhou = rhou
rhov = rhov
rhoE = rhoE
vel_x = vel_x
vel_y = vel_y
temperature = temperature
enthalpy = enthalpy
# This value is not used in the Euler equations, but it *is* used
# by the stabilization parameter computation, which it decreases
# the amount of artificial viscosity added, so it's best to use a
# realistic value.
dynamic_viscosity = 0.0
fluid_properties = ideal_gas
[../]
[]
[Preconditioning]
[./SMP_PJFNK]
type = SMP
full = true
solve_type = 'PJFNK'
[../]
[]
[Executioner]
type = Transient
dt = 5.e-5
dtmin = 1.e-5
start_time = 0.0
num_steps = 10000
nl_rel_tol = 1e-5
nl_abs_tol = 1e-9
# nl_abs_step_tol = 1e-15
nl_max_its = 5
l_tol = 1e-4 # Relative linear tolerance for each Krylov solve
l_max_its = 100 # Number of linear iterations for each Krylov solve
# Specify the order as FIRST, otherwise you will get warnings in DEBUG mode...
[./Quadrature]
type = TRAP
order = FIRST
[../]
[]
[Outputs]
file_base = step_out
interval = 1
exodus = true
[]
test/tests/auxkernels/solution_aux/aux_nonlinear_solution_adapt_xda.i
[Mesh]
# This test uses SolutionUserObject which doesn't work with DistributedMesh.
type = FileMesh
file = aux_nonlinear_solution_adapt_out_0004_mesh.xda
parallel_type = replicated
[]
[Adaptivity]
marker = error_frac
steps = 2
[./Indicators]
[./jump_indicator]
type = GradientJumpIndicator
variable = u
[../]
[../]
[./Markers]
[./error_frac]
type = ErrorFractionMarker
indicator = jump_indicator
refine = 0.7
[../]
[../]
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
[../]
[]
[AuxVariables]
[./u_aux]
[../]
[]
[Functions]
[./u_xda_func]
type = SolutionFunction
solution = xda_u
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[AuxKernels]
[./aux_xda_kernel]
type = SolutionAux
variable = u_aux
solution = xda_u_aux
execute_on = initial
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = 1
value = 1
[../]
[./right]
type = DirichletBC
variable = u
boundary = 2
value = 2
[../]
[]
[UserObjects]
[./xda_u_aux]
type = SolutionUserObject
system = aux0
mesh = aux_nonlinear_solution_adapt_out_0004_mesh.xda
es = aux_nonlinear_solution_adapt_out_0004.xda
system_variables = u_aux
execute_on = initial
[../]
[./xda_u]
type = SolutionUserObject
system = nl0
mesh = aux_nonlinear_solution_adapt_out_0004_mesh.xda
es = aux_nonlinear_solution_adapt_out_0004.xda
system_variables = u
execute_on = initial
[../]
[]
[Executioner]
type = Steady
solve_type = PJFNK
nl_rel_tol = 1e-10
[]
[Outputs]
exodus = true
[]
[ICs]
[./u_func_ic]
function = u_xda_func
variable = u
type = FunctionIC
[../]
[]
modules/tensor_mechanics/examples/coal_mining/coarse.i
# Strata deformation and fracturing around a coal mine - 3D model
#
# A "half model" is used. The mine is 400m deep and
# just the roof is studied (-400<=z<=0). The mining panel
# sits between 0<=x<=150, and 0<=y<=1000, so this simulates
# a coal panel that is 300m wide and 1000m long. The outer boundaries
# are 1km from the excavation boundaries.
#
# Time is meaningless in this example
# as quasi-static solutions are sought at each timestep, but
# the number of timesteps controls the resolution of the
# process.
#
# The boundary conditions for this simulation are:
# - disp_x = 0 at x=0 and x=1150
# - disp_y = 0 at y=-1000 and y=1000
# - disp_z = 0 at z=-400, but there is a time-dependent
# Young's modulus that simulates excavation
# - wc_x = 0 at y=-1000 and y=1000
# - wc_y = 0 at x=0 and x=1150
# That is, rollers on the sides, free at top,
# and prescribed at bottom in the unexcavated portion.
#
# The small strain formulation is used.
#
# All stresses are measured in MPa. The initial stress is consistent with
# the weight force from density 2500 kg/m^3, ie, stress_zz = 0.025*z MPa
# where gravity = 10 m.s^-2 = 1E-5 MPa m^2/kg. The maximum and minimum
# principal horizontal stresses are assumed to be equal to 0.8*stress_zz.
#
# Material properties:
# Young's modulus = 8 GPa
# Poisson's ratio = 0.25
# Cosserat layer thickness = 1 m
# Cosserat-joint normal stiffness = large
# Cosserat-joint shear stiffness = 1 GPa
# MC cohesion = 3 MPa
# MC friction angle = 37 deg
# MC dilation angle = 8 deg
# MC tensile strength = 1 MPa
# MC compressive strength = 100 MPa
# WeakPlane cohesion = 0.1 MPa
# WeakPlane friction angle = 30 deg
# WeakPlane dilation angle = 10 deg
# WeakPlane tensile strength = 0.1 MPa
# WeakPlane compressive strength = 100 MPa softening to 1 MPa at strain = 1
#
[Mesh]
type = FileMesh
file = mesh/coarse.e
[]
[GlobalParams]
perform_finite_strain_rotations = false
displacements = 'disp_x disp_y disp_z'
Cosserat_rotations = 'wc_x wc_y wc_z'
[]
[MeshModifiers]
[./xmin]
type = SideSetsAroundSubdomain
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
new_boundary = xmin
normal = '-1 0 0'
[../]
[./xmax]
type = SideSetsAroundSubdomain
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
new_boundary = xmax
normal = '1 0 0'
[../]
[./ymin]
type = SideSetsAroundSubdomain
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
new_boundary = ymin
normal = '0 -1 0'
[../]
[./ymax]
type = SideSetsAroundSubdomain
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
new_boundary = ymax
normal = '0 1 0'
[../]
[./zmax]
type = SideSetsAroundSubdomain
block = 16
new_boundary = zmax
normal = '0 0 1'
[../]
[./zmin]
type = SideSetsAroundSubdomain
block = 2
new_boundary = zmin
normal = '0 0 -1'
[../]
[./excav]
type = SubdomainBoundingBox
depends_on = 'xmin xmax ymin ymax zmin zmax'
block_id = 1
bottom_left = '0 0 -400'
top_right = '150 1000 -397'
[../]
[./roof]
type = SideSetsAroundSubdomain
block = 1
depends_on = excav
new_boundary = roof
normal = '0 0 1'
[../]
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[./disp_z]
[../]
[./wc_x]
[../]
[./wc_y]
[../]
[]
[Kernels]
[./cx_elastic]
type = CosseratStressDivergenceTensors
use_displaced_mesh = false
variable = disp_x
component = 0
[../]
[./cy_elastic]
type = CosseratStressDivergenceTensors
use_displaced_mesh = false
variable = disp_y
component = 1
[../]
[./cz_elastic]
type = CosseratStressDivergenceTensors
use_displaced_mesh = false
variable = disp_z
component = 2
[../]
[./x_couple]
type = StressDivergenceTensors
use_displaced_mesh = false
variable = wc_x
displacements = 'wc_x wc_y wc_z'
component = 0
base_name = couple
[../]
[./y_couple]
type = StressDivergenceTensors
use_displaced_mesh = false
variable = wc_y
displacements = 'wc_x wc_y wc_z'
component = 1
base_name = couple
[../]
[./x_moment]
type = MomentBalancing
use_displaced_mesh = false
variable = wc_x
component = 0
[../]
[./y_moment]
type = MomentBalancing
use_displaced_mesh = false
variable = wc_y
component = 1
[../]
[./gravity]
type = Gravity
use_displaced_mesh = false
variable = disp_z
value = -10E-6 # remember this is in MPa
[../]
[]
[AuxVariables]
[./wc_z]
[../]
[./stress_xx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xz]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yz]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zz]
order = CONSTANT
family = MONOMIAL
[../]
[./mc_shear]
order = CONSTANT
family = MONOMIAL
[../]
[./mc_tensile]
order = CONSTANT
family = MONOMIAL
[../]
[./wp_shear]
order = CONSTANT
family = MONOMIAL
[../]
[./wp_tensile]
order = CONSTANT
family = MONOMIAL
[../]
[./wp_shear_f]
order = CONSTANT
family = MONOMIAL
[../]
[./wp_tensile_f]
order = CONSTANT
family = MONOMIAL
[../]
[./mc_shear_f]
order = CONSTANT
family = MONOMIAL
[../]
[./mc_tensile_f]
order = CONSTANT
family = MONOMIAL
[../]
[]
[AuxKernels]
[./stress_xx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xx
index_i = 0
index_j = 0
[../]
[./stress_xy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xy
index_i = 0
index_j = 1
[../]
[./stress_xz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xz
index_i = 0
index_j = 2
[../]
[./stress_yx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yx
index_i = 1
index_j = 0
[../]
[./stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
[../]
[./stress_yz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yz
index_i = 1
index_j = 2
[../]
[./stress_zx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zx
index_i = 2
index_j = 0
[../]
[./stress_zy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zy
index_i = 2
index_j = 1
[../]
[./stress_zz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zz
index_i = 2
index_j = 2
[../]
[./mc_shear]
type = MaterialStdVectorAux
index = 0
property = mc_plastic_internal_parameter
variable = mc_shear
[../]
[./mc_tensile]
type = MaterialStdVectorAux
index = 1
property = mc_plastic_internal_parameter
variable = mc_tensile
[../]
[./wp_shear]
type = MaterialStdVectorAux
index = 0
property = wp_plastic_internal_parameter
variable = wp_shear
[../]
[./wp_tensile]
type = MaterialStdVectorAux
index = 1
property = wp_plastic_internal_parameter
variable = wp_tensile
[../]
[./mc_shear_f]
type = MaterialStdVectorAux
index = 6
property = mc_plastic_yield_function
variable = mc_shear_f
[../]
[./mc_tensile_f]
type = MaterialStdVectorAux
index = 0
property = mc_plastic_yield_function
variable = mc_tensile_f
[../]
[./wp_shear_f]
type = MaterialStdVectorAux
index = 0
property = wp_plastic_yield_function
variable = wp_shear_f
[../]
[./wp_tensile_f]
type = MaterialStdVectorAux
index = 1
property = wp_plastic_yield_function
variable = wp_tensile_f
[../]
[]
[BCs]
[./no_x]
type = PresetBC
variable = disp_x
boundary = 'xmin xmax'
value = 0.0
[../]
[./no_y]
type = PresetBC
variable = disp_y
boundary = 'ymin ymax'
value = 0.0
[../]
[./no_z]
type = PresetBC
variable = disp_z
boundary = zmin
value = 0.0
[../]
[./no_wc_x]
type = PresetBC
variable = wc_x
boundary = 'ymin ymax'
value = 0.0
[../]
[./no_wc_y]
type = PresetBC
variable = wc_y
boundary = 'xmin xmax'
value = 0.0
[../]
[./roof]
type = StickyBC
variable = disp_z
min_value = -3.0
boundary = roof
[../]
[]
[Functions]
[./ini_xx]
type = ParsedFunction
value = '0.8*2500*10E-6*z'
[../]
[./ini_zz]
type = ParsedFunction
value = '2500*10E-6*z'
[../]
[./excav_sideways]
type = ParsedFunction
vars = 'end_t ymin ymax minval maxval slope'
vals = '17.0 0 1000.0 1E-9 1 60'
# excavation face at ymin+(ymax-ymin)*min(t/end_t,1)
# slope is the distance over which the modulus reduces from maxval to minval
value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),minval,if(y<ymin+(ymax-ymin)*min(t/end_t,1)+slope,minval+(maxval-minval)*(y-(ymin+(ymax-ymin)*min(t/end_t,1)))/slope,maxval))'
[../]
[./density_sideways]
type = ParsedFunction
vars = 'end_t ymin ymax minval maxval'
vals = '17.0 0 1000.0 0 2500'
value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),minval,maxval)'
[../]
[]
[UserObjects]
[./mc_coh_strong_harden]
type = TensorMechanicsHardeningExponential
value_0 = 2.99 # MPa
value_residual = 3.01 # MPa
rate = 1.0
[../]
[./mc_fric]
type = TensorMechanicsHardeningConstant
value = 0.65 # 37deg
[../]
[./mc_dil]
type = TensorMechanicsHardeningConstant
value = 0.15 # 8deg
[../]
[./mc_tensile_str_strong_harden]
type = TensorMechanicsHardeningExponential
value_0 = 1.0 # MPa
value_residual = 1.0 # MPa
rate = 1.0
[../]
[./mc_compressive_str]
type = TensorMechanicsHardeningCubic
value_0 = 100 # Large!
value_residual = 100
internal_limit = 0.1
[../]
[./wp_coh_harden]
type = TensorMechanicsHardeningCubic
value_0 = 0.1
value_residual = 0.1
internal_limit = 10
[../]
[./wp_tan_fric]
type = TensorMechanicsHardeningConstant
value = 0.36 # 20deg
[../]
[./wp_tan_dil]
type = TensorMechanicsHardeningConstant
value = 0.18 # 10deg
[../]
[./wp_tensile_str_harden]
type = TensorMechanicsHardeningCubic
value_0 = 0.1
value_residual = 0.1
internal_limit = 10
[../]
[./wp_compressive_str_soften]
type = TensorMechanicsHardeningCubic
value_0 = 100
value_residual = 1
internal_limit = 1.0
[../]
[]
[Materials]
[./elasticity_tensor_0]
type = ComputeLayeredCosseratElasticityTensor
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
young = 8E3 # MPa
poisson = 0.25
layer_thickness = 1.0
joint_normal_stiffness = 1E9 # huge
joint_shear_stiffness = 1E3 # MPa
[../]
[./elasticity_tensor_1]
type = ComputeLayeredCosseratElasticityTensor
block = 1
young = 8E3 # MPa
poisson = 0.25
layer_thickness = 1.0
joint_normal_stiffness = 1E9 # huge
joint_shear_stiffness = 1E3 # MPa
elasticity_tensor_prefactor = excav_sideways
[../]
[./strain]
type = ComputeCosseratIncrementalSmallStrain
eigenstrain_names = ini_stress
[../]
[./ini_stress]
type = ComputeEigenstrainFromInitialStress
eigenstrain_name = ini_stress
initial_stress = 'ini_xx 0 0 0 ini_xx 0 0 0 ini_zz'
[../]
[./stress_0]
type = ComputeMultipleInelasticCosseratStress
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
inelastic_models = 'mc wp'
cycle_models = true
relative_tolerance = 2.0
absolute_tolerance = 1E6
max_iterations = 1
tangent_operator = nonlinear
perform_finite_strain_rotations = false
[../]
[./stress_1]
type = ComputeMultipleInelasticCosseratStress
block = 1
inelastic_models = ''
relative_tolerance = 2.0
absolute_tolerance = 1E6
max_iterations = 1
tangent_operator = nonlinear
perform_finite_strain_rotations = false
[../]
[./mc]
type = CappedMohrCoulombCosseratStressUpdate
warn_about_precision_loss = false
host_youngs_modulus = 8E3
host_poissons_ratio = 0.25
base_name = mc
tensile_strength = mc_tensile_str_strong_harden
compressive_strength = mc_compressive_str
cohesion = mc_coh_strong_harden
friction_angle = mc_fric
dilation_angle = mc_dil
max_NR_iterations = 100000
smoothing_tol = 0.1 # MPa # Must be linked to cohesion
yield_function_tol = 1E-9 # MPa. this is essentially the lowest possible without lots of precision loss
perfect_guess = true
min_step_size = 1.0
[../]
[./wp]
type = CappedWeakPlaneCosseratStressUpdate
warn_about_precision_loss = false
base_name = wp
cohesion = wp_coh_harden
tan_friction_angle = wp_tan_fric
tan_dilation_angle = wp_tan_dil
tensile_strength = wp_tensile_str_harden
compressive_strength = wp_compressive_str_soften
max_NR_iterations = 10000
tip_smoother = 0.1
smoothing_tol = 0.1 # MPa # Note, this must be tied to cohesion, otherwise get no possible return at cone apex
yield_function_tol = 1E-11 # MPa. this is essentially the lowest possible without lots of precision loss
perfect_guess = true
min_step_size = 1.0E-3
[../]
[./density_0]
type = GenericConstantMaterial
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
prop_names = density
prop_values = 2500
[../]
[./density_1]
type = GenericFunctionMaterial
block = 1
prop_names = density
prop_values = density_sideways
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[]
[]
[Postprocessors]
[./min_roof_disp]
type = NodalExtremeValue
boundary = roof
value_type = min
variable = disp_z
[../]
[./min_surface_disp]
type = NodalExtremeValue
boundary = zmax
value_type = min
variable = disp_z
[../]
[]
[Executioner]
type = Transient
solve_type = 'NEWTON'
petsc_options = '-snes_converged_reason'
petsc_options_iname = '-pc_type -ksp_type -ksp_gmres_restart'
petsc_options_value = ' bjacobi gmres 200'
line_search = bt
nl_abs_tol = 1e-3
nl_rel_tol = 1e-5
l_max_its = 30
nl_max_its = 1000
start_time = 0.0
dt = 0.5 # this gives min(disp_z)=-4.3, use dt=0.0625 if you want to restrict disp_z>=-3.2
end_time = 17.0
[]
[Outputs]
interval = 1
print_linear_residuals = false
exodus = true
csv = true
console = true
[]
test/tests/materials/output/output_multiple_files.i
[Mesh]
type = FileMesh
file = rectangle.e
dim = 2
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = CoefDiffusion
variable = u
coef = 0.5
[../]
[./time]
type = TimeDerivative
variable = u
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = 1
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = 2
value = 1
[../]
[]
[Materials]
[./block_1]
type = OutputTestMaterial
block = 1
output_properties = 'real_property'
outputs = exodus1
variable = u
[../]
[./block_2]
type = OutputTestMaterial
block = 2
output_properties = 'vector_property'
outputs = exodus2
variable = u
[../]
[]
[Executioner]
type = Transient
num_steps = 5
dt = 0.1
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
[./exodus1]
type = Exodus
hide = u
[../]
[./exodus2]
type = Exodus
hide = u
[../]
[]
modules/combined/test/tests/beam_eigenstrain_transfer/master_uo_transfer.i
# Test for multi app vector postprocessor to aux variable transfer
# Master App contains 2 beams, one starting at (1.5, 2.0, 2.0) and
# another starting at (2.5, 0.0, 3.0). Both beams extend for
# 0.150080 m along the y direction.
# Each subApp contains a 2D model of width 0.5 m and height 0.150080 m.
# A time varying temperature profile is assigned to each 2D model and
# the resulting yy strain along the right boundary (x = 0.5) is
# transferred to the beam model using the multi app transfer. The subApps
# are positioned in the [MultiApp] block such that the origin of the beams
# coincides with the origin of the subApp.
# For each master beam node/element, the MultiAppUserObjectTransfer finds
# the subApp where this node belongs, projects this node to the right
# boundary of the subApp and assigns the value corresponding to the
# projected point.
# Result: The y displacement of the beam should equal the y
# displacement along the right boundary of the 2D model.
[Mesh]
type = FileMesh
file = 2_beams_new.e
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[./disp_z]
[../]
[./rot_x]
order = FIRST
family = LAGRANGE
[../]
[./rot_y]
order = FIRST
family = LAGRANGE
[../]
[./rot_z]
order = FIRST
family = LAGRANGE
[../]
[]
[BCs]
[./fixx1]
type = DirichletBC
variable = disp_x
boundary = 1
value = 0.0
[../]
[./fixy1]
type = DirichletBC
variable = disp_y
boundary = 1
value = 0.0
[../]
[./fixz1]
type = DirichletBC
variable = disp_z
boundary = 1
value = 0.0
[../]
[./fixr1]
type = DirichletBC
variable = rot_x
boundary = 1
value = 0.0
[../]
[./fixr2]
type = DirichletBC
variable = rot_y
boundary = 1
value = 0.0
[../]
[./fixr3]
type = DirichletBC
variable = rot_z
boundary = 1
value = 0.0
[../]
[]
[Kernels]
[./solid_disp_x]
type = StressDivergenceBeam
block = '1'
displacements = 'disp_x disp_y disp_z'
rotations = 'rot_x rot_y rot_z'
component = 0
variable = disp_x
[../]
[./solid_disp_y]
type = StressDivergenceBeam
block = '1'
displacements = 'disp_x disp_y disp_z'
rotations = 'rot_x rot_y rot_z'
component = 1
variable = disp_y
[../]
[./solid_disp_z]
type = StressDivergenceBeam
block = '1'
displacements = 'disp_x disp_y disp_z'
rotations = 'rot_x rot_y rot_z'
component = 2
variable = disp_z
[../]
[./solid_rot_x]
type = StressDivergenceBeam
block = '1'
displacements = 'disp_x disp_y disp_z'
rotations = 'rot_x rot_y rot_z'
component = 3
variable = rot_x
[../]
[./solid_rot_y]
type = StressDivergenceBeam
block = '1'
displacements = 'disp_x disp_y disp_z'
rotations = 'rot_x rot_y rot_z'
component = 4
variable = rot_y
[../]
[./solid_rot_z]
type = StressDivergenceBeam
block = '1'
displacements = 'disp_x disp_y disp_z'
rotations = 'rot_x rot_y rot_z'
component = 5
variable = rot_z
[../]
[]
[Materials]
[./elasticity]
type = ComputeElasticityBeam
youngs_modulus = 1e9
poissons_ratio = 0.3
shear_coefficient = 1.0
block = 1
[../]
[./strain]
type = ComputeIncrementalBeamStrain
block = '1'
displacements = 'disp_x disp_y disp_z'
rotations = 'rot_x rot_y rot_z'
area = 0.5
Ay = 0.0
Az = 0.0
Iy = 0.01
Iz = 0.01
y_orientation = '0.0 0.0 1.0'
eigenstrain_names = 'thermal'
[../]
[./stress]
type = ComputeBeamResultants
block = 1
[../]
[./thermal]
type = ComputeEigenstrainBeamFromVariable
displacement_eigenstrain_variables = 'zero1 to_var zero2'
eigenstrain_name = thermal
[../]
[]
[Executioner]
type = Transient
#Preconditioned JFNK (default)
solve_type = 'PJFNK'
line_search = 'none'
l_max_its = 50
nl_max_its = 50
nl_rel_tol = 1e-12
nl_abs_tol = 1e-12
l_tol = 1e-9
start_time = 0.0
end_time = 0.075
dt = 0.0125
dtmin = 0.0001
[]
[AuxVariables]
[./to_var]
[../]
[./zero1]
[../]
[./zero2]
[../]
[]
[MultiApps]
[./sub]
type = TransientMultiApp
app_type = CombinedApp
positions = '1.5 2.0 2.0 2.5 0.0 3.0'
input_files = 'subapp1_uo_transfer.i subapp2_uo_transfer.i'
[../]
[]
[Transfers]
[./fromsub]
type = MultiAppUserObjectTransfer
direction = from_multiapp
user_object = axial_str
multi_app = sub
variable = to_var
all_master_nodes_contained_in_sub_app = true
[../]
[]
[Postprocessors]
[./pos1]
type = PointValue
variable = disp_y
point = '1.5 2.150080 2.0'
[../]
[./pos2]
type = PointValue
variable = disp_y
point = '2.5 0.150080 3.0'
[../]
[]
[Outputs]
exodus = true
[]
modules/misc/test/tests/fracture_flow/single.i
# Models fluid advecting down a single fracture sitting at x=0, and 0<=y<=3.
#
[Mesh]
type = FileMesh
file = 'single.e'
[]
[Variables]
[./u]
[../]
[]
[ICs]
[./u_init]
type = ConstantIC
variable = u
value = 0
[../]
[]
[BCs]
[./inj]
type = PresetBC
boundary = 1
variable = u
value = 1
[../]
[]
[Kernels]
[./matrix_dt]
type = CoefTimeDerivative
variable = u
Coefficient = 0.2 # matrix porosity
block = 1
[../]
[./matrix_diff]
type = AnisotropicDiffusion
variable = u
block = 1
tensor_coeff = '0.002 0 0 0 0 0 0 0 0' # matrix porosity * matrix diffusivity
[../]
[./fracture_dt]
type = CoefTimeDerivative
variable = u
Coefficient = 0.1 # fracture half-aperture * fracture porosity
block = 2
[../]
[./fracture_advect]
type = Convection
variable = u
block = 2
velocity = '0 0.08 0' # fracture half-aperture * velocity in fracture
[../]
[]
[Preconditioning]
[./standard]
type = SMP
full = true
petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
petsc_options_value = 'bcgs bjacobi 1E-13 1E-20 10000'
[../]
[]
[Executioner]
type = Transient
dt = 2e-1
end_time = 1.0
solve_type = Newton
[]
[Outputs]
exodus = true
[]
test/tests/outputs/oversample/over_sampling_test_file.i
[Mesh]
type = FileMesh
file = square_3x3.e
[]
[Functions]
[./exact_fn]
type = ParsedFunction
value = t*((x*x)+(y*y))
[../]
[./forcing_fn]
type = ParsedFunction
value = -4+(x*x+y*y)
[../]
[]
[Variables]
active = 'u'
[./u]
order = THIRD
family = HERMITE
[../]
[]
[Kernels]
active = 'ie diff ffn'
[./ie]
type = TimeDerivative
variable = u
[../]
[./diff]
type = Diffusion
variable = u
[../]
[./ffn]
type = BodyForce
variable = u
function = forcing_fn
[../]
[]
[BCs]
[./all]
type = FunctionDirichletBC
variable = u
boundary = '1 2 3 4'
function = exact_fn
[../]
[]
[Postprocessors]
[./dt]
type = TimestepSize
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
dt = 0.2
start_time = 0
num_steps = 5
[]
[Outputs]
file_base = out_file
exodus = true
[./oversampling]
file_base = out_file_oversample
type = Exodus
refinements = 3
[../]
[]
test/tests/materials/output/output_block_displaced.i
[Mesh]
type = FileMesh
file = rectangle.e
dim = 2
uniform_refine = 1
displacements = 'disp disp'
[]
[Functions]
[./disp_fn]
type = ParsedFunction
value = x
[../]
[]
[AuxVariables]
[./disp]
[../]
[]
[AuxKernels]
[./disp_ak]
type = FunctionAux
variable = disp
function = disp_fn
[../]
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = CoefDiffusion
variable = u
coef = 0.5
[../]
[./time]
type = TimeDerivative
variable = u
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = 1
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = 2
value = 2
[../]
[]
[Materials]
[./block_1]
type = OutputTestMaterial
block = 1
output_properties = 'real_property tensor_property'
outputs = exodus
variable = u
[../]
[./block_2]
type = OutputTestMaterial
block = 2
output_properties = 'vector_property tensor_property'
outputs = exodus
variable = u
[../]
[]
[Executioner]
type = Transient
num_steps = 5
dt = 0.1
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
[./exodus]
type = Exodus
use_displaced = true
sequence = false
[../]
[]
modules/solid_mechanics/examples/bridge/bridge_large_strain.i
#
# Bridge linear elasticity example
#
# This example models a bridge using linear elasticity.
# It can be either steel or concrete.
# Gravity is applied
# A pressure of 0.5 MPa is also applied
#
[GlobalParams]
disp_x = disp_x
disp_y = disp_y
disp_z = disp_z
[]
[Mesh]
displacements = 'disp_x disp_y disp_z' #Define displacements for deformed mesh
type = FileMesh #Read in mesh from file
file = ../../../tensor_mechanics/examples/bridge/bridge.e
boundary_id = '1 2 3 4 5 6' #Assign names to boundaries to make things clearer
boundary_name = 'top left right bottom1 bottom2 bottom3'
[]
[Variables]
[./disp_x]
order = FIRST
family = LAGRANGE
[../]
[./disp_y]
order = FIRST
family = LAGRANGE
[../]
[./disp_z]
order = FIRST
family = LAGRANGE
[../]
[]
[SolidMechanics]
[./solid]
[../]
[]
[Kernels]
[./gravity_y]
#Gravity is applied to bridge
type = Gravity
variable = disp_y
value = -9.81
[../]
[]
[AuxVariables]
[./von_mises]
#Dependent variable used to visualize the Von Mises stress
order = CONSTANT
family = MONOMIAL
[../]
[]
[AuxKernels]
[./von_mises_kernel]
#Calculates the von mises stress and assigns it to von_mises
type = MaterialTensorAux
variable = von_mises
tensor = stress
execute_on = timestep_end
quantity = VonMises
[../]
[]
[BCs]
[./Pressure]
[./load]
#Applies the pressure
boundary = top
factor = 5e5 # Pa
[../]
[../]
[./anchor_x]
#Anchors the bottom and sides against deformation in the x-direction
type = PresetBC
variable = disp_x
boundary = 'left right bottom1 bottom2 bottom3'
value = 0.0
[../]
[./anchor_y]
#Anchors the bottom and sides against deformation in the y-direction
type = PresetBC
variable = disp_y
boundary = 'left right bottom1 bottom2 bottom3'
value = 0.0
[../]
[./anchor_z]
#Anchors the bottom and sides against deformation in the z-direction
type = PresetBC
variable = disp_z
boundary = 'left right bottom1 bottom2 bottom3'
value = 0.0
[../]
[]
[Materials]
[./steel_elastic]
type = Elastic
block = 1
youngs_modulus = 210e9 #Pa
poissons_ratio = 0.3
formulation = Nonlinear3D
[../]
[./density_steel]
#Defines the density of steel
type = GenericConstantMaterial
block = 1
prop_names = density
prop_values = 7850 # kg/m^3
[../]
[]
[Preconditioning]
[./SMP]
#Creates the entire Jacobian, for the Newton solve
type = SMP
full = true
[../]
[]
[Executioner]
#We solve a steady state problem using Newton's iteration
type = Transient
solve_type = NEWTON
nl_rel_tol = 1e-9
l_max_its = 30
l_tol = 1e-4
nl_max_its = 10
petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
petsc_options_value = 'hypre boomeramg 31'
dt = 0.1
num_steps = 1
[]
[Outputs]
[./exodus]
#Outputs the result to an exodus file and converts the element stress output to a nodal output
type = Exodus
elemental_as_nodal = true
[../]
[]
modules/combined/doc/richards/user/excav/ex01.i
###########################################
# #
# THIS EXAMPLE CONTAINS AN EXCAVATION #
# #
###########################################
# Easiest way of figuring out what's happening:
# Run this example, load into paraview, take
# a slice through (0,0,0) with normal (0,0,1),
# colour by pressure and play the animation.
# This mesh has an interior sideset called excav_bdy
[Mesh]
type = FileMesh
file = ex01_input.e
[]
# This is a boundary condition acting on excav_bdy
# All it does is to set the pressure to p_excav=0
# at places on excav_bdy wherever excav_fcn tells it to.
[BCs]
[./excav_bdy]
type = RichardsExcav
boundary = excav_bdy
p_excav = 0.0
variable = pressure
excav_geom_function = excav_fcn
[../]
[]
[Functions]
# excav_fcn controls where to set pressure=p_excav
# You supply start and end positions and times and
# by a linear interpolation these define the position
# of the coal face at all times
[./excav_fcn]
type = RichardsExcavGeom
start_posn = '0 -500 0'
start_time = 0
end_posn = '0 500 0'
end_time = 3E7
[../]
# mass_bal_fcn calculates the mass balance
[./mass_bal_fcn]
type = ParsedFunction
value = abs((mi-fout-mf)/2/(mi+mf))
vars = 'mi mf fout'
vals = 'mass_init mass_final flux_out'
[../]
# initial pressure - unimportant in this example
[./initial_pressure]
type = ParsedFunction
value = -10000*(z-100)
[../]
[]
# following is needed by postprocessors, kernels, etc
# unimportant in this example
[GlobalParams]
porepressureNames_UO = PPNames
[]
# following does the calculation of relevant
# masses and mass-flux to the excavation
[Postprocessors]
# note that this is calculated at beginning of timestep
[./mass_init]
type = RichardsMass
variable = pressure
execute_on = timestep_begin
[../]
# note this is calculated at end of timestep
[./mass_final]
type = RichardsMass
variable = pressure
execute_on = timestep_end
[../]
# this is what calculates the mass flux to the excavation
# it is calculating it for boundary=excav_bdy, and the
# excavation time-dependence is set through the excav_fcn
[./flux_out]
type = RichardsExcavFlow
boundary = excav_bdy
variable = pressure
excav_geom_function = excav_fcn
[../]
# mass_bal just outputs the result to screen
[./mass_bal]
type = FunctionValuePostprocessor
function = mass_bal_fcn
[../]
[]
######################################
# #
# THE FOLLOWING STUFF IS STANDARD #
# #
######################################
[UserObjects]
[./PPNames]
type = RichardsPorepressureNames
porepressure_vars = pressure
[../]
[./DensityConstBulk]
type = RichardsDensityConstBulk
dens0 = 1000
bulk_mod = 2E9
[../]
[./Seff1VG]
type = RichardsSeff1VG
m = 0.8
al = 1E-5
[../]
[./RelPermPower]
type = RichardsRelPermPower
simm = 0.0
n = 2
[../]
[./Saturation]
type = RichardsSat
s_res = 0
sum_s_res = 0
[../]
[./SUPGstandard]
type = RichardsSUPGstandard
p_SUPG = 1E+2
[../]
[]
[Variables]
active = 'pressure'
[./pressure]
order = FIRST
family = LAGRANGE
[../]
[]
[ICs]
[./p_ic]
type = FunctionIC
variable = pressure
function = initial_pressure
[../]
[]
[AuxVariables]
[./Seff1VG_Aux]
[../]
[]
[Kernels]
active = 'richardsf richardst'
[./richardst]
type = RichardsMassChange
variable = pressure
[../]
[./richardsf]
type = RichardsFlux
variable = pressure
[../]
[]
[Materials]
[./all]
type = RichardsMaterial
block = '1 2 3 4'
viscosity = 1E-3
mat_porosity = 0.1
mat_permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-15'
density_UO = DensityConstBulk
relperm_UO = RelPermPower
sat_UO = Saturation
seff_UO = Seff1VG
SUPG_UO = SUPGstandard
gravity = '0 0 -10'
linear_shape_fcns = true
[../]
[]
[AuxKernels]
[./Seff1VG_AuxK]
type = RichardsSeffAux
variable = Seff1VG_Aux
seff_UO = Seff1VG
pressure_vars = pressure
[../]
[]
[Preconditioning]
[./usual]
type = SMP
full = true
petsc_options = '-snes_converged_reason'
petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
[../]
[]
[Executioner]
type = Transient
end_time = 6E6
dt = 3E6
solve_type = NEWTON
[]
[Outputs]
execute_on = 'timestep_end'
file_base = ex01
exodus = true
csv = true
[]
test/tests/kernels/ode/coupled_ode_td_auxvar_ic_from_mesh.i
[Mesh]
type = FileMesh
file = 'coupled_ode_td_out.e'
[]
[Variables]
[./f]
family = SCALAR
order = FIRST
initial_condition = 1
[../]
[./f_times_mult]
family = SCALAR
order = FIRST
initial_condition = 1
[../]
[]
[ScalarKernels]
[./dT]
type = CoupledODETimeDerivative
variable = f
v = f_times_mult
[../]
[./src]
type = ParsedODEKernel
variable = f
function = '-1'
[../]
[./f_times_mult_1]
type = ParsedODEKernel
variable = f_times_mult
function = 'f_times_mult'
[../]
[./f_times_mult_2]
type = ParsedODEKernel
variable = f_times_mult
function = '-f * g'
args = 'f g'
[../]
[]
[AuxVariables]
[./g]
family = SCALAR
order = FIRST
initial_from_file_var = g
initial_from_file_timestep = 'LATEST'
[../]
[]
[Functions]
[./function_g]
type = ParsedFunction
value = '(1 + t)'
[../]
[]
[AuxScalarKernels]
[./set_g]
type = FunctionScalarAux
function = function_g
variable = g
execute_on = 'timestep_end'
[../]
[]
[Postprocessors]
[./f]
type = ScalarVariable
variable = f
execute_on = 'initial timestep_end'
[../]
[]
[Executioner]
type = Transient
dt = 1
num_steps = 3
nl_abs_tol = 1e-9
[]
[Outputs]
csv = true
[]
modules/tensor_mechanics/test/tests/truss/truss_3d_action.i
[Mesh]
type = FileMesh
file = truss_3d.e
displacements = 'disp_x disp_y disp_z'
[]
[AuxVariables]
[./axial_stress]
order = CONSTANT
family = MONOMIAL
[../]
[./e_over_l]
order = CONSTANT
family = MONOMIAL
[../]
[./area]
order = CONSTANT
family = MONOMIAL
[../]
[./react_x]
order = FIRST
family = LAGRANGE
[../]
[./react_y]
order = FIRST
family = LAGRANGE
[../]
[./react_z]
order = FIRST
family = LAGRANGE
[../]
[]
[Functions]
[./x2]
type = PiecewiseLinear
x = '0 1 2 3'
y = '0 .5 1 1'
[../]
[./y2]
type = PiecewiseLinear
x = '0 1 2 3'
y = '0 0 .5 1'
[../]
[]
[BCs]
[./fixx1]
type = DirichletBC
variable = disp_x
boundary = 1
value = 0.0
[../]
[./fixx2]
type = FunctionDirichletBC
variable = disp_x
boundary = 2
function = x2
[../]
[./fixx3]
type = DirichletBC
variable = disp_x
boundary = 3
value = 0.0
[../]
[./fixy1]
type = DirichletBC
variable = disp_y
boundary = 1
value = 0
[../]
[./fixy2]
type = FunctionDirichletBC
variable = disp_y
boundary = 2
function = y2
[../]
[./fixy3]
type = DirichletBC
variable = disp_y
boundary = 3
value = 0
[../]
[./fixz1]
type = DirichletBC
variable = disp_z
boundary = 1
value = 0
[../]
[./fixz2]
type = DirichletBC
variable = disp_z
boundary = 2
value = 0
[../]
[./fixz3]
type = DirichletBC
variable = disp_z
boundary = 3
value = 0
[../]
[]
[AuxKernels]
[./axial_stress]
type = MaterialRealAux
block = '1 2'
property = axial_stress
variable = axial_stress
[../]
[./e_over_l]
type = MaterialRealAux
block = '1 2'
property = e_over_l
variable = e_over_l
[../]
[./area]
type = ConstantAux
block = '1 2'
variable = area
value = 1.0
execute_on = 'initial timestep_begin'
[../]
[]
[Executioner]
type = Transient
solve_type = PJFNK
petsc_options_iname = '-pc_type -ksp_gmres_restart'
petsc_options_value = 'jacobi 101'
line_search = 'none'
nl_max_its = 15
nl_rel_tol = 1e-6
nl_abs_tol = 1e-10
dt = 1
num_steps = 3
end_time = 3
[]
[Modules/TensorMechanics/LineElementMaster]
[./block]
truss = true
add_variables = true
displacements = 'disp_x disp_y disp_z'
area = area
block = '1 2'
save_in = 'react_x react_y react_z'
[../]
[]
[Materials]
[./linelast]
type = LinearElasticTruss
block = '1 2'
youngs_modulus = 1e6
displacements = 'disp_x disp_y disp_z'
[../]
[]
[Outputs]
file_base = 'truss_3d_out'
exodus = true
[]
test/tests/auxkernels/solution_aux/solution_aux_exodus_interp.i
[Mesh]
type = FileMesh
file = cubesource.e
# This test uses SolutionUserObject which doesn't work with DistributedMesh.
parallel_type = replicated
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
initial_condition = 0.0
[../]
[]
[AuxVariables]
[./nn]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[AuxKernels]
[./nn]
type = SolutionAux
variable = nn
solution = soln
[../]
[]
[UserObjects]
[./soln]
type = SolutionUserObject
mesh = cubesource.e
system_variables = source_nodal
[../]
[]
[BCs]
[./stuff]
type = DirichletBC
variable = u
boundary = '1 2'
value = 0.0
[../]
[]
[Executioner]
type = Transient
solve_type = 'NEWTON'
l_max_its = 800
nl_rel_tol = 1e-10
num_steps = 50
end_time = 5
dt = 0.5
[]
[Outputs]
execute_on = 'timestep_end'
exodus = true
[]
modules/tensor_mechanics/test/tests/radial_disp_aux/cylinder_3d_cartesian.i
# The purpose of this set of tests is to check the values computed
# by the RadialDisplacementAux AuxKernel. They should match the
# radial component of the displacment for a cylindrical or spherical
# model.
# This particular model is of a cylinder subjected to uniform thermal
# expansion represented using a 3D Cartesian model.
[Mesh]
type = FileMesh
file = cylinder_sector_3d.e
[]
[GlobalParams]
displacements = 'disp_x disp_y disp_z'
order = SECOND
family = LAGRANGE
[]
[AuxVariables]
[./temp]
[../]
[./rad_disp]
[../]
[]
[Functions]
[./temperature_load]
type = ParsedFunction
value = t+300.0
[../]
[]
[Modules/TensorMechanics/Master]
[./all]
strain = FINITE
add_variables = true
eigenstrain_names = eigenstrain
[../]
[]
[AuxKernels]
[./tempfuncaux]
type = FunctionAux
variable = temp
function = temperature_load
use_displaced_mesh = false
[../]
[./raddispaux]
type = RadialDisplacementCylinderAux
variable = rad_disp
origin = '0 0 0'
axis_vector = '0 0 1'
[../]
[]
[BCs]
[./x]
type = DirichletBC
variable = disp_x
boundary = 1
value = 0.0
[../]
[./y]
type = DirichletBC
variable = disp_y
boundary = 2
value = 0.0
[../]
[./z]
type = DirichletBC
variable = disp_z
boundary = '3 4'
value = 0.0
[../]
[]
[Materials]
[./elasticity_tensor]
type = ComputeIsotropicElasticityTensor
youngs_modulus = 2.1e5
poissons_ratio = 0.3
[../]
[./small_stress]
type = ComputeFiniteStrainElasticStress
[../]
[./thermal_expansion]
type = ComputeThermalExpansionEigenstrain
stress_free_temperature = 300
thermal_expansion_coeff = 1.3e-5
temperature = temp
eigenstrain_name = eigenstrain
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options = '-snes_ksp_ew'
petsc_options_iname = '-ksp_gmres_restart'
petsc_options_value = '51'
line_search = 'none'
l_max_its = 50
nl_max_its = 50
nl_rel_tol = 1e-12
nl_abs_tol = 1e-10
start_time = 0.0
end_time = 1
dt = 1
dtmin = 1
[]
[Outputs]
csv = true
exodus = true
[]
#[Postprocessors]
# [./strain_xx]
# type = SideAverageValue
# variable =
# block = 0
# [../]
#[]
modules/richards/test/tests/dirac/bh_fu_07.i
#fullyupwind
[Mesh]
type = FileMesh
file = bh07_input.e
[]
[GlobalParams]
richardsVarNames_UO = PPNames
density_UO = DensityConstBulk
relperm_UO = RelPermPower
sat_UO = Saturation
seff_UO = Seff1VG
SUPG_UO = SUPGstandard
[]
[Functions]
[./dts]
type = PiecewiseLinear
y = '1000 10000'
x = '100 1000'
[../]
[]
[UserObjects]
[./PPNames]
type = RichardsVarNames
richards_vars = pressure
[../]
[./DensityConstBulk]
type = RichardsDensityConstBulk
dens0 = 1000
bulk_mod = 2E9
[../]
[./Seff1VG]
type = RichardsSeff1VG
m = 0.8
al = 1E-5
[../]
[./RelPermPower]
type = RichardsRelPermPower
simm = 0.0
n = 2
[../]
[./Saturation]
type = RichardsSat
s_res = 0
sum_s_res = 0
[../]
[./SUPGstandard]
type = RichardsSUPGstandard
p_SUPG = 1E8
[../]
[./borehole_total_outflow_mass]
type = RichardsSumQuantity
[../]
[]
[Variables]
active = 'pressure'
[./pressure]
order = FIRST
family = LAGRANGE
[../]
[]
[ICs]
[./p_ic]
type = FunctionIC
variable = pressure
function = initial_pressure
[../]
[]
[BCs]
[./fix_outer]
type = DirichletBC
boundary = perimeter
variable = pressure
value = 1E7
[../]
[]
[AuxVariables]
[./Seff1VG_Aux]
[../]
[]
[Kernels]
active = 'richardsf richardst'
[./richardst]
type = RichardsMassChange
variable = pressure
[../]
[./richardsf]
type = RichardsFullyUpwindFlux
variable = pressure
[../]
[]
[DiracKernels]
[./bh]
type = RichardsBorehole
bottom_pressure = 0
point_file = bh07.bh
SumQuantityUO = borehole_total_outflow_mass
variable = pressure
unit_weight = '0 0 0'
re_constant = 0.1594
character = 2
fully_upwind = true
[../]
[]
[Postprocessors]
[./bh_report]
type = RichardsPlotQuantity
uo = borehole_total_outflow_mass
execute_on = 'initial timestep_end'
[../]
[./fluid_mass]
type = RichardsMass
variable = pressure
execute_on = 'initial timestep_end'
[../]
[]
[Functions]
[./initial_pressure]
type = ParsedFunction
value = 1E7
[../]
[]
[Materials]
[./all]
type = RichardsMaterial
block = 1
viscosity = 1E-3
mat_porosity = 0.1
mat_permeability = '1E-11 0 0 0 1E-11 0 0 0 1E-11'
gravity = '0 0 0'
linear_shape_fcns = true
[../]
[]
[AuxKernels]
[./Seff1VG_AuxK]
type = RichardsSeffAux
variable = Seff1VG_Aux
seff_UO = Seff1VG
pressure_vars = pressure
[../]
[]
[Preconditioning]
[./usual]
type = SMP
full = true
petsc_options = '-snes_converged_reason'
petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
[../]
[]
[Executioner]
type = Transient
end_time = 1000
solve_type = NEWTON
[./TimeStepper]
# get only marginally better results for smaller time steps
type = FunctionDT
function = dts
[../]
[]
[Outputs]
file_base = bh_fu_07
execute_on = 'initial timestep_end final'
interval = 10000
exodus = true
[]
modules/porous_flow/test/tests/desorption/desorption02.i
# Illustrates desorption works as planned.
#
# A mesh contains 3 elements in arranged in a line.
# The central element contains desorped fluid.
# This desorps to the nodes of that element.
#
# In the central element, of volume V, the following occurs.
# The initial porepressure=1, and concentration=1.
# The initial mass of fluid is
# V * (2 * porosity * density + (1 - porosity) * concentration)
# = V * 1.289547
# Notice the factor of "2" in the porespace contribution:
# it is because the porepressure is evaluated at nodes, so
# the nodes on the exterior of the centre_block have
# nodal-volume contributions from the elements not in centre_block.
#
# The mass-conservation equation reads
# 2 * porosity * density + (1 - porosity) * concentration = 1.289547
# and the desorption equation reads
# d( (1-porosity)C )/dt = - (1/tau)(C - dens_L * P / (P_L + P))
# where C = concentration, P = porepressure, P_L = Langmuir pressure
# dens_L = Langmuir density, tau = time constant.
# Using the mass-conservation equation in the desorption equation
# yields a nonlinear equation of P. For dt=1, and the numerical values
# given below this yields
# P = 1.83697
# and
# C = 0.676616
# The desired result is achieved by MOOSE
[Mesh]
type = FileMesh
file = three_eles.e
[]
[GlobalParams]
PorousFlowDictator = dictator
[]
[Variables]
[./pp]
[../]
[./conc]
family = MONOMIAL
order = CONSTANT
block = centre_block
[../]
[]
[ICs]
[./p_ic]
type = ConstantIC
variable = pp
value = 1.0
[../]
[./conc_ic]
type = ConstantIC
variable = conc
value = 1.0
block = centre_block
[../]
[]
[Kernels]
[./porespace_mass_dot]
type = PorousFlowMassTimeDerivative
fluid_component = 0
variable = pp
[../]
[./fluid_flow]
type = PorousFlowAdvectiveFlux
fluid_component = 0
variable = pp
gravity = '0 0 0'
[../]
[./desorped_mass_dot]
type = PorousFlowDesorpedMassTimeDerivative
block = centre_block
conc_var = conc
variable = pp
[../]
[./desorped_mass_dot_conc_var]
type = PorousFlowDesorpedMassTimeDerivative
block = centre_block
conc_var = conc
variable = conc
[../]
[./flow_from_matrix]
type = DesorptionFromMatrix
block = centre_block
variable = conc
pressure_var = pp
[../]
[]
[UserObjects]
[./dictator]
type = PorousFlowDictator
porous_flow_vars = 'pp conc'
number_fluid_phases = 1
number_fluid_components = 1
[../]
[./pc]
type = PorousFlowCapillaryPressureVG
m = 0.5
alpha = 1
[../]
[]
[Modules]
[./FluidProperties]
[./simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 1.5
viscosity = 1
density0 = 1
thermal_expansion = 0
[../]
[../]
[]
[Materials]
[./lang_stuff]
type = LangmuirMaterial
block = centre_block
one_over_adsorption_time_const = 10.0
one_over_desorption_time_const = 10.0
langmuir_density = 1
langmuir_pressure = 1
pressure_var = pp
conc_var = conc
[../]
[./temperature]
type = PorousFlowTemperature
[../]
[./ppss]
type = PorousFlow1PhaseP
porepressure = pp
capillary_pressure = pc
[../]
[./massfrac]
type = PorousFlowMassFraction
[../]
[./simple_fluid]
type = PorousFlowSingleComponentFluid
fp = simple_fluid
phase = 0
[../]
[./porosity]
type = PorousFlowPorosityConst
porosity = 0.1
[../]
[./permeability]
type = PorousFlowPermeabilityConst
permeability = '0 0 0 0 0 0 0 0 0'
[../]
[./relperm]
type = PorousFlowRelativePermeabilityFLAC
m = 1
phase = 0
[../]
[]
[Preconditioning]
[./andy]
type = SMP
full = true
petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
[../]
[]
[Executioner]
type = Transient
solve_type = Newton
dt = 1
end_time = 1
[]
[Outputs]
exodus = true
[]
modules/combined/test/tests/phase_field_fracture_viscoplastic/crack2d.i
[Mesh]
type = FileMesh
file = crack_mesh.e
[]
[GlobalParams]
displacements = 'disp_x disp_y'
volumetric_locking_correction = true
[]
[Modules]
[./TensorMechanics]
[./Master]
[./All]
add_variables = true
strain = Finite
additional_generate_output = stress_yy
save_in = 'resid_x resid_y'
[../]
[../]
[../]
[./PhaseField]
[./Nonconserved]
[./c]
free_energy = E_el
mobility = L
kappa = kappa_op
[../]
[../]
[../]
[]
[AuxVariables]
[./resid_x]
[../]
[./resid_y]
[../]
[./stress_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./peeq]
order = CONSTANT
family = MONOMIAL
[../]
[]
[Kernels]
[./solid_x]
type = PhaseFieldFractureMechanicsOffDiag
variable = disp_x
component = 0
c = c
use_displaced_mesh = true
[../]
[./solid_y]
type = PhaseFieldFractureMechanicsOffDiag
variable = disp_y
component = 1
c = c
use_displaced_mesh = true
[../]
[]
[AuxKernels]
[./stress_yy]
type = RankTwoAux
variable = stress_yy
rank_two_tensor = stress
index_j = 1
index_i = 1
execute_on = timestep_end
[../]
[./peeq]
type = MaterialRealAux
variable = peeq
property = ep_eqv
execute_on = timestep_end
[../]
[]
[BCs]
[./ydisp]
type = FunctionPresetBC
variable = disp_y
boundary = 2
function = '0.0001*t'
[../]
[./yfix]
type = PresetBC
variable = disp_y
boundary = 1
value = 0
[../]
[./xfix]
type = PresetBC
variable = disp_x
boundary = '1 2'
value = 0
[../]
[]
[UserObjects]
[./flowstress]
type = HEVPLinearHardening
yield_stress = 300
slope = 1000
intvar_prop_name = ep_eqv
[../]
[./flowrate]
type = HEVPFlowRatePowerLawJ2
reference_flow_rate = 0.0001
flow_rate_exponent = 10.0
flow_rate_tol = 1
strength_prop_name = flowstress
[../]
[./ep_eqv]
type = HEVPEqvPlasticStrain
intvar_rate_prop_name = ep_eqv_rate
[../]
[./ep_eqv_rate]
type = HEVPEqvPlasticStrainRate
flow_rate_prop_name = flowrate
[../]
[]
[Materials]
[./pfbulkmat]
type = GenericConstantMaterial
prop_names = 'l visco'
prop_values = '0.08 1'
[../]
[./pfgc]
type = GenericFunctionMaterial
prop_names = 'gc_prop'
prop_values = '1.0e-3'
[../]
[./define_mobility]
type = ParsedMaterial
material_property_names = 'gc_prop visco'
f_name = L
function = '1/(gc_prop * visco)'
[../]
[./define_kappa]
type = ParsedMaterial
material_property_names = 'gc_prop l'
f_name = kappa_op
function = 'gc_prop * l'
[../]
[./viscop_damage]
type = HyperElasticPhaseFieldIsoDamage
resid_abs_tol = 1e-18
resid_rel_tol = 1e-8
maxiters = 50
max_substep_iteration = 5
flow_rate_user_objects = 'flowrate'
strength_user_objects = 'flowstress'
internal_var_user_objects = 'ep_eqv'
internal_var_rate_user_objects = 'ep_eqv_rate'
numerical_stiffness = false
damage_stiffness = 1e-8
c = c
F_name = E_el
[../]
[./elasticity_tensor]
type = ComputeElasticityTensor
C_ijkl = '120.0 80.0'
fill_method = symmetric_isotropic
[../]
[]
[Postprocessors]
[./resid_x]
type = NodalSum
variable = resid_x
boundary = 2
[../]
[./resid_y]
type = NodalSum
variable = resid_y
boundary = 2
[../]
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
solve_type = PJFNK
petsc_options_iname = '-pc_type -ksp_grmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
petsc_options_value = 'asm 31 preonly lu 1'
nl_rel_tol = 1e-8
l_max_its = 10
nl_max_its = 10
dt = 1
dtmin = 1e-4
num_steps = 2
[]
[Outputs]
exodus = true
[]
modules/richards/test/tests/theis/th_lumped_01.i
# fully-saturated
# production
# lumped
[Mesh]
type = FileMesh
file = th01_input.e
[]
[GlobalParams]
richardsVarNames_UO = PPNames
density_UO = DensityConstBulk
relperm_UO = RelPermPower
sat_UO = Saturation
seff_UO = Seff1VG
SUPG_UO = SUPGstandard
[]
[Functions]
[./dts]
type = PiecewiseLinear
y = '0.5 1 2 10'
x = '0 1 10 100'
[../]
[]
[UserObjects]
[./PPNames]
type = RichardsVarNames
richards_vars = pressure
[../]
[./DensityConstBulk]
type = RichardsDensityConstBulk
dens0 = 1000
bulk_mod = 2E9
[../]
[./Seff1VG]
type = RichardsSeff1VG
m = 0.8
al = 1E-5
[../]
[./RelPermPower]
type = RichardsRelPermPower
simm = 0.0
n = 2
[../]
[./Saturation]
type = RichardsSat
s_res = 0
sum_s_res = 0
[../]
[./SUPGstandard]
type = RichardsSUPGstandard
p_SUPG = 1E-5
[../]
[./total_outflow_mass]
type = RichardsSumQuantity
[../]
[]
[Variables]
active = 'pressure'
[./pressure]
order = FIRST
family = LAGRANGE
[../]
[]
[ICs]
[./p_ic]
type = FunctionIC
variable = pressure
function = initial_pressure
[../]
[]
[AuxVariables]
[./Seff1VG_Aux]
[../]
[]
[Kernels]
active = 'richardsf richardst'
[./richardst]
type = RichardsLumpedMassChange
variable = pressure
[../]
[./richardsf]
type = RichardsFlux
variable = pressure
[../]
[]
[DiracKernels]
[./bh]
type = RichardsPolyLineSink
pressures = '-1E9 1E9'
fluxes = '200 200'
point_file = th01.points
SumQuantityUO = total_outflow_mass
variable = pressure
[../]
[]
[Postprocessors]
[./flow_report]
type = RichardsPlotQuantity
uo = total_outflow_mass
[../]
[./p50]
type = PointValue
variable = pressure
point = '50 0 0'
execute_on = timestep_end
[../]
[]
[Functions]
[./initial_pressure]
type = ParsedFunction
value = 1E5
[../]
[]
[Materials]
[./all]
type = RichardsMaterial
block = 1
viscosity = 1E-3
mat_porosity = 0.1
mat_permeability = '1E-10 0 0 0 1E-10 0 0 0 1E-10'
gravity = '0 0 0'
linear_shape_fcns = true
[../]
[]
[AuxKernels]
[./Seff1VG_AuxK]
type = RichardsSeffAux
variable = Seff1VG_Aux
seff_UO = Seff1VG
pressure_vars = pressure
[../]
[]
[Preconditioning]
[./usual]
type = SMP
full = true
petsc_options = '-snes_converged_reason'
petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
petsc_options_value = 'bcgs bjacobi 1E-6 1E-10 10000 30'
[../]
[]
[Executioner]
type = Transient
end_time = 100
solve_type = NEWTON
[./TimeStepper]
type = FunctionDT
function = dts
[../]
[]
[Outputs]
execute_on = 'timestep_end'
file_base = th_lumped_01
csv = true
[]
modules/richards/test/tests/theis/th02.i
# fully-saturated
# production
[Mesh]
type = FileMesh
file = th02_input.e
[]
[GlobalParams]
richardsVarNames_UO = PPNames
[]
[Functions]
[./dts]
type = PiecewiseLinear
y = '1 2 4 20'
x = '0 1 10 100'
[../]
[]
[UserObjects]
[./PPNames]
type = RichardsVarNames
richards_vars = pressure
[../]
[./DensityConstBulk]
type = RichardsDensityConstBulk
dens0 = 1000
bulk_mod = 2E9
[../]
[./Seff1VG]
type = RichardsSeff1VG
m = 0.8
al = 1E-5
[../]
[./RelPermPower]
type = RichardsRelPermPower
simm = 0.0
n = 2
[../]
[./Saturation]
type = RichardsSat
s_res = 0
sum_s_res = 0
[../]
[./SUPGstandard]
type = RichardsSUPGstandard
p_SUPG = 1E-5
[../]
[./total_outflow_mass]
type = RichardsSumQuantity
[../]
[]
[Variables]
active = 'pressure'
[./pressure]
order = FIRST
family = LAGRANGE
[../]
[]
[ICs]
[./p_ic]
type = FunctionIC
variable = pressure
function = initial_pressure
[../]
[]
[AuxVariables]
[./Seff1VG_Aux]
[../]
[]
[Kernels]
active = 'richardsf richardst'
[./richardst]
type = RichardsMassChange
variable = pressure
[../]
[./richardsf]
type = RichardsFlux
variable = pressure
[../]
[]
[DiracKernels]
[./bh]
type = RichardsPolyLineSink
pressures = '-1E9 1E9'
fluxes = '200 200'
point_file = th01.points
SumQuantityUO = total_outflow_mass
variable = pressure
[../]
[]
[Postprocessors]
[./flow_report]
type = RichardsPlotQuantity
uo = total_outflow_mass
[../]
[./p50]
type = PointValue
variable = pressure
point = '50 0 0'
execute_on = 'initial timestep_end'
[../]
[]
[Functions]
[./initial_pressure]
type = ParsedFunction
value = 1E5
[../]
[]
[Materials]
[./all]
type = RichardsMaterial
block = 1
viscosity = 1E-3
mat_porosity = 0.1
mat_permeability = '1E-10 0 0 0 1E-10 0 0 0 1E-10'
density_UO = DensityConstBulk
relperm_UO = RelPermPower
sat_UO = Saturation
seff_UO = Seff1VG
SUPG_UO = SUPGstandard
gravity = '0 0 0'
linear_shape_fcns = true
[../]
[]
[AuxKernels]
[./Seff1VG_AuxK]
type = RichardsSeffAux
variable = Seff1VG_Aux
seff_UO = Seff1VG
pressure_vars = pressure
[../]
[]
[Preconditioning]
[./usual]
type = SMP
full = true
petsc_options = '-snes_converged_reason'
petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
petsc_options_value = 'bcgs bjacobi 1E-6 1E-10 10000 30'
[../]
[]
[Executioner]
type = Transient
end_time = 100
solve_type = NEWTON
[./TimeStepper]
type = FunctionDT
function = dts
[../]
[]
[Outputs]
file_base = th02
csv = true
[]
modules/porous_flow/examples/flow_through_fractured_media/coarse_3D.i
# Flow and solute transport along 2 2D eliptical fractures embedded in a 3D porous matrix
# the model domain has dimensions 1 x 1 x 0.3m and the two fracture have r1 = 0.45 and r2 = 0.2
# The fractures intersect each other and the domain boundaries on two opposite sides
# fracture aperture = 6e-4m
# fracture porosity = 6e-4m
# fracture permeability = 1.8e-11 which is based in k=3e-8 from a**2/12, and k*a = 3e-8*6e-4;
# matrix porosity = 0.1;
# matrix permeanility = 1e-20;
[Mesh]
type = FileMesh
file = coarse_3D.e
block_id = '1 2 3'
block_name = 'matrix f1 f2'
boundary_id = '1 2 3 4'
boundary_name = 'rf2 lf1 right_matrix left_matrix'
[]
[GlobalParams]
PorousFlowDictator = dictator
gravity = '0 0 0'
[]
[Variables]
[./pp]
[../]
[./tracer]
[../]
[]
[AuxVariables]
[./velocity_x]
family = MONOMIAL
order = CONSTANT
block = 'f1 f2'
[../]
[./velocity_y]
family = MONOMIAL
order = CONSTANT
block = 'f1 f2'
[../]
[./velocity_z]
family = MONOMIAL
order = CONSTANT
block = 'f1 f2'
[../]
[]
[AuxKernels]
[./velocity_x]
type = PorousFlowDarcyVelocityComponentLowerDimensional
variable = velocity_x
component = x
aperture = 6E-4
[../]
[./velocity_y]
type = PorousFlowDarcyVelocityComponentLowerDimensional
variable = velocity_y
component = y
aperture = 6E-4
[../]
[./velocity_z]
type = PorousFlowDarcyVelocityComponentLowerDimensional
variable = velocity_z
component = z
aperture = 6E-4
[../]
[]
[ICs]
[./pp]
type = ConstantIC
variable = pp
value = 1e6
[../]
[./tracer]
type = ConstantIC
variable = tracer
value = 0
[../]
[]
[BCs]
[./top]
type = PresetBC
value = 0
variable = tracer
boundary = rf2
[../]
[./bottom]
type = PresetBC
value = 1
variable = tracer
boundary = lf1
[../]
[./ptop]
type = PresetBC
variable = pp
boundary = rf2
value = 1e6
[../]
[./pbottom]
type = PresetBC
variable = pp
boundary = lf1
value = 1.02e6
[../]
[]
[Kernels]
[./mass0]
type = PorousFlowMassTimeDerivative
fluid_component = 0
variable = pp
[../]
[./adv0]
type = PorousFlowAdvectiveFlux
fluid_component = 0
variable = pp
[../]
[./diff0]
type = PorousFlowDispersiveFlux
fluid_component = 0
variable = pp
disp_trans = 0
disp_long = 0
[../]
[./mass1]
type = PorousFlowMassTimeDerivative
fluid_component = 1
variable = tracer
[../]
[./adv1]
type = PorousFlowAdvectiveFlux
fluid_component = 1
variable = tracer
[../]
[./diff1]
type = PorousFlowDispersiveFlux
fluid_component = 1
variable = tracer
disp_trans = 0
disp_long = 0
[../]
[]
[UserObjects]
[./dictator]
type = PorousFlowDictator
porous_flow_vars = 'pp tracer'
number_fluid_phases = 1
number_fluid_components = 2
[../]
[]
[Modules]
[./FluidProperties]
[./simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 2e9
density0 = 1000
thermal_expansion = 0
viscosity = 1e-3
[../]
[../]
[]
[Materials]
[./temperature]
type = PorousFlowTemperature
[../]
[./ppss]
type = PorousFlow1PhaseFullySaturated
porepressure = pp
[../]
[./massfrac]
type = PorousFlowMassFraction
mass_fraction_vars = 'tracer'
[../]
[./simple_fluid]
type = PorousFlowSingleComponentFluid
fp = simple_fluid
phase = 0
[../]
[./poro1]
type = PorousFlowPorosityConst
porosity = 6e-4 # = a * phif
block = 'f1 f2'
[../]
[./diff1]
type = PorousFlowDiffusivityConst
diffusion_coeff = '1.e-9 1.e-9'
tortuosity = 1.0
block = 'f1 f2'
[../]
[./poro2]
type = PorousFlowPorosityConst
porosity = 0.1
block = 'matrix'
[../]
[./diff2]
type = PorousFlowDiffusivityConst
diffusion_coeff = '1.e-9 1.e-9'
tortuosity = 0.1
block = 'matrix'
[../]
[./relp]
type = PorousFlowRelativePermeabilityConst
phase = 0
[../]
[./permeability1]
type = PorousFlowPermeabilityConst
permeability = '1.8e-11 0 0 0 1.8e-11 0 0 0 1.8e-11' # 1.8e-11 = a * kf
block = 'f1 f2'
[../]
[./permeability2]
type = PorousFlowPermeabilityConst
permeability = '1e-20 0 0 0 1e-20 0 0 0 1e-20'
block = 'matrix'
[../]
[]
[Preconditioning]
active = basic
[./mumps_is_best_for_parallel_jobs]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
[../]
[./basic]
type = SMP
full = true
petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = 'gmres asm lu NONZERO 2 '
[../]
[]
[Executioner]
type = Transient
solve_type = NEWTON
end_time = 20
dt = 1
[]
[VectorPostprocessors]
[./xmass]
type = LineValueSampler
start_point = '-0.5 0 0'
end_point = '0.5 0 0'
sort_by = x
num_points = 41
variable = tracer
outputs = csv
[../]
[]
[Outputs]
[./csv]
type = CSV
execute_on = 'final'
[../]
[]
test/tests/mesh_modifiers/add_all_side_sets/simple.i
[Mesh]
type = FileMesh
file = twoblocks.e
# This MeshModifier currently only works with ReplicatedMesh.
# For more information, refer to #2129.
parallel_type = replicated
[]
[MeshModifiers]
[./block_1]
type = AddAllSideSetsByNormals
[../]
[]
# This input file is intended to be run with the "--mesh-only" option so
# no other sections are required
test/tests/constraints/tied_value_constraint/tied_value_constraint_test.i
# [Debug]
# show_top_residuals = 5
# []
[Mesh]
type = FileMesh
file = constraint_test.e
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
# active = 'diff'
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
# active = 'left right'
[./left]
type = DirichletBC
variable = u
boundary = 1
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = 4
value = 1
[../]
[]
[Constraints]
[./value]
type = TiedValueConstraint
variable = u
slave = 2
master = 3
master_variable = u
[../]
[]
[Preconditioning]
# active = 'FDP'
active = ''
[./FDP]
# full = true
# off_diag_row = 'v'
# off_diag_column = 'u'
type = FDP
[../]
[]
[Executioner]
# l_tol = 1e-1
# l_tol = 1e-
# nl_rel_tol = 1e-14
type = Steady
solve_type = NEWTON
l_max_its = 100
[]
[Outputs]
file_base = out
exodus = true
[]
modules/richards/test/tests/theis/th_lumped_22.i
# two-phase, fully-saturated
# production
# lumped
[Mesh]
type = FileMesh
file = th02_input.e
[]
[GlobalParams]
richardsVarNames_UO = PPNames
density_UO = 'DensityWater DensityGas'
relperm_UO = 'RelPermWater RelPermGas'
SUPG_UO = 'SUPGwater SUPGgas'
sat_UO = 'SatWater SatGas'
seff_UO = 'SeffWater SeffGas'
[]
[Functions]
[./dts]
type = PiecewiseLinear
y = '1 2 4 20'
x = '0 1 10 100'
[../]
[]
[UserObjects]
[./PPNames]
type = RichardsVarNames
richards_vars = 'pwater pgas'
[../]
[./DensityWater]
type = RichardsDensityConstBulk
dens0 = 1000
bulk_mod = 2E9
[../]
[./DensityGas]
type = RichardsDensityConstBulk
dens0 = 1
bulk_mod = 2E6
[../]
[./SeffWater]
type = RichardsSeff2waterVG
m = 0.8
al = 1E-5
[../]
[./SeffGas]
type = RichardsSeff2gasVG
m = 0.8
al = 1E-5
[../]
[./RelPermWater]
type = RichardsRelPermPower
simm = 0.0
n = 2
[../]
[./RelPermGas]
type = RichardsRelPermPower
simm = 0.0
n = 3
[../]
[./SatWater]
type = RichardsSat
s_res = 0.0
sum_s_res = 0.0
[../]
[./SatGas]
type = RichardsSat
s_res = 0.0
sum_s_res = 0.0
[../]
[./SUPGwater]
type = RichardsSUPGstandard
p_SUPG = 1E-5
[../]
[./SUPGgas]
type = RichardsSUPGstandard
p_SUPG = 1E-5
[../]
[./total_outflow_mass]
type = RichardsSumQuantity
[../]
[]
[Variables]
[./pwater]
order = FIRST
family = LAGRANGE
[../]
[./pgas]
order = FIRST
family = LAGRANGE
[../]
[]
[ICs]
[./water_ic]
type = FunctionIC
variable = pwater
function = initial_pressure
[../]
[./gas_ic]
type = FunctionIC
variable = pgas
function = initial_pressure
[../]
[]
[AuxVariables]
[./Seff1VG_Aux]
[../]
[]
[Kernels]
active = 'richardsfwater richardstwater richardsfgas richardstgas'
[./richardstwater]
type = RichardsLumpedMassChange
variable = pwater
[../]
[./richardsfwater]
type = RichardsFlux
variable = pwater
[../]
[./richardstgas]
type = RichardsLumpedMassChange
variable = pgas
[../]
[./richardsfgas]
type = RichardsFlux
variable = pgas
[../]
[]
[AuxKernels]
[./Seff1VG_AuxK]
type = RichardsSeffAux
variable = Seff1VG_Aux
seff_UO = SeffWater
pressure_vars = 'pwater pgas'
[../]
[]
[DiracKernels]
[./bh]
type = RichardsPolyLineSink
pressures = '-1E9 1E9'
fluxes = '200 200'
point_file = th01.points
SumQuantityUO = total_outflow_mass
variable = pwater
[../]
[]
[Postprocessors]
[./flow_report]
type = RichardsPlotQuantity
uo = total_outflow_mass
[../]
[./p50]
type = PointValue
variable = pwater
point = '50 0 0'
execute_on = timestep_end
[../]
[]
[Functions]
[./initial_pressure]
type = ParsedFunction
value = 1E5
[../]
[]
[Materials]
[./all]
type = RichardsMaterial
block = 1
mat_porosity = 0.1
mat_permeability = '1E-10 0 0 0 1E-10 0 0 0 1E-10'
viscosity = '1E-3 1E-5'
gravity = '0 0 0'
linear_shape_fcns = true
[../]
[]
[Preconditioning]
[./usual]
type = SMP
full = true
petsc_options = '-snes_converged_reason -ksp_diagonal_scale -ksp_diagonal_scale_fix -ksp_gmres_modifiedgramschmidt -snes_linesearch_monitor'
petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap -snes_atol -snes_rtol -snes_max_it -ksp_rtol -ksp_atol'
petsc_options_value = 'gmres asm lu NONZERO 2 2E-7 1E-10 20 1E-10 1E-100'
[../]
[]
[Executioner]
type = Transient
end_time = 100
solve_type = NEWTON
[./TimeStepper]
type = FunctionDT
function = dts
[../]
[]
[Outputs]
execute_on = 'timestep_end'
file_base = th_lumped_22
exodus = true
csv = true
[]
modules/porous_flow/examples/restart/gas_injection.i
# Using the results from the equilibrium run to provide the initial condition for
# porepressure, we now inject a gas phase into the brine-saturated reservoir. In this
# example, where the mesh used is identical to the mesh used in gravityeq.i, we can use
# the basic restart capability by simply setting the initial condition for porepressure
# using the results from gravityeq.i.
#
# Even though the gravity equilibrium is established using a 2D mesh, in this example,
# we shift the mesh 0.1 m to the right and rotate it about the Y axis to make a 2D radial
# model.
#
# Methane injection takes place over the surface of the hole created by rotating the mesh,
# and hence the injection area is 2 pi r h. We can calculate this using an AreaPostprocessor,
# and then use this in a ParsedFunction to calculate the injection rate so that 10 kg/s of
# methane is injected.
#
# Results can be improved by uniformly refining the initial mesh.
#
# Note: as this example uses the results from a previous simulation, gravityeq.i MUST be
# run before running this input file.
[Mesh]
type = FileMesh
file = gravityeq_out.e
uniform_refine = 1
[]
[MeshModifiers]
[./translate]
type = Transform
transform = TRANSLATE
vector_value = '0.1 0 0'
[../]
[]
[Problem]
coord_type = RZ
rz_coord_axis = Y
[]
[GlobalParams]
PorousFlowDictator = dictator
gravity = '0 -9.81 0'
temperature_unit = Celsius
[]
[Variables]
[./pp_liq]
initial_from_file_var = porepressure
[../]
[./sat_gas]
initial_condition = 0
[../]
[]
[AuxVariables]
[./temperature]
initial_condition = 50
[../]
[./xnacl]
initial_condition = 0.1
[../]
[./brine_density]
family = MONOMIAL
order = CONSTANT
[../]
[./methane_density]
family = MONOMIAL
order = CONSTANT
[../]
[./massfrac_ph0_sp0]
initial_condition = 1
[../]
[./massfrac_ph1_sp0]
initial_condition = 0
[../]
[./pp_gas]
family = MONOMIAL
order = CONSTANT
[../]
[./sat_liq]
family = MONOMIAL
order = CONSTANT
[../]
[]
[Kernels]
[./mass0]
type = PorousFlowMassTimeDerivative
variable = pp_liq
[../]
[./flux0]
type = PorousFlowAdvectiveFlux
variable = pp_liq
[../]
[./mass1]
type = PorousFlowMassTimeDerivative
variable = sat_gas
fluid_component = 1
[../]
[./flux1]
type = PorousFlowAdvectiveFlux
variable = sat_gas
fluid_component = 1
[../]
[]
[AuxKernels]
[./brine_density]
type = PorousFlowPropertyAux
property = density
variable = brine_density
execute_on = 'initial timestep_end'
[../]
[./methane_density]
type = PorousFlowPropertyAux
property = density
variable = methane_density
phase = 1
execute_on = 'initial timestep_end'
[../]
[./pp_gas]
type = PorousFlowPropertyAux
property = pressure
phase = 1
variable = pp_gas
execute_on = 'initial timestep_end'
[../]
[./sat_liq]
type = PorousFlowPropertyAux
property = saturation
variable = sat_liq
execute_on = 'initial timestep_end'
[../]
[]
[BCs]
[./gas_injection]
type = PorousFlowSink
boundary = left
variable = sat_gas
flux_function = injection_rate
fluid_phase = 1
[../]
[./brine_out]
type = PorousFlowPiecewiseLinearSink
boundary = right
variable = pp_liq
multipliers = '0 1e9'
pt_vals = '0 1e9'
fluid_phase = 0
flux_function = 1e-6
use_mobility = true
[../]
[]
[Functions]
[./injection_rate]
type = ParsedFunction
vals = injection_area
vars = area
value = '-10/area'
[../]
[]
[UserObjects]
[./dictator]
type = PorousFlowDictator
porous_flow_vars = 'pp_liq sat_gas'
number_fluid_phases = 2
number_fluid_components = 2
[../]
[./pc]
type = PorousFlowCapillaryPressureVG
alpha = 1e-5
m = 0.5
sat_lr = 0.2
[../]
[]
[Modules]
[./FluidProperties]
[./brine]
type = BrineFluidProperties
[../]
[./methane]
type = MethaneFluidProperties
[../]
[./methane_tab]
type = TabulatedFluidProperties
fp = methane
save_file = false
[../]
[../]
[]
[Materials]
[./temperature]
type = PorousFlowTemperature
temperature = temperature
[../]
[./ps]
type = PorousFlow2PhasePS
phase0_porepressure = pp_liq
phase1_saturation = sat_gas
capillary_pressure = pc
[../]
[./massfrac]
type = PorousFlowMassFraction
mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
[../]
[./brine]
type = PorousFlowBrine
compute_enthalpy = false
compute_internal_energy = false
xnacl = xnacl
phase = 0
[../]
[./methane]
type = PorousFlowSingleComponentFluid
compute_enthalpy = false
compute_internal_energy = false
fp = methane_tab
phase = 1
[../]
[./porosity]
type = PorousFlowPorosityConst
porosity = 0.1
[../]
[./permeability]
type = PorousFlowPermeabilityConst
permeability = '1e-13 0 0 0 1e-13 0 0 0 1e-13'
[../]
[./relperm_liq]
type = PorousFlowRelativePermeabilityCorey
n = 2
phase = 0
s_res = 0.2
sum_s_res = 0.3
[../]
[./relperm_gas]
type = PorousFlowRelativePermeabilityCorey
n = 2
phase = 1
s_res = 0.1
sum_s_res = 0.3
[../]
[]
[Preconditioning]
[./smp]
type = SMP
full = true
petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type'
petsc_options_value = ' asm lu NONZERO'
[../]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1e8
nl_abs_tol = 1e-12
nl_rel_tol = 1e-06
nl_max_its = 20
dtmax = 1e6
[./TimeStepper]
type = IterationAdaptiveDT
dt = 1e1
[../]
[]
[Postprocessors]
[./mass_ph0]
type = PorousFlowFluidMass
fluid_component = 0
execute_on = 'initial timestep_end'
[../]
[./mass_ph1]
type = PorousFlowFluidMass
fluid_component = 1
execute_on = 'initial timestep_end'
[../]
[./injection_area]
type = AreaPostprocessor
boundary = left
execute_on = initial
[../]
[]
[Outputs]
execute_on = 'initial timestep_end'
exodus = true
perf_graph = true
[]
test/tests/mesh_modifiers/modifier_depend_order/modifier_depend_order.i
[Mesh]
type = FileMesh
file = square.e
# This MeshModifier currently only works with ReplicatedMesh.
# For more information, refer to #2129.
parallel_type = replicated
[]
# Mesh Modifiers
[MeshModifiers]
# If no dependencies are defined, the order of execution is not defined (based on pointer locations) so
# this test case has several dependencies to minimize the chance of getting lucky when things aren't defined properly.
# Rotations along different axes must occur in a defined order to end up at the right orientation at the end.
# The final mesh will be angled at 45 degrees with new sidesets where there were none before.
[./add_side_sets]
type = SideSetsFromNormals
normals = ' 0.70710678118 0.70710678118 0
-0.70710678118 -0.70710678118 0'
new_boundary = 'up_right down_left'
variance = 1e-3
fixed_normal = true
depends_on = last_rotate
[../]
[./last_rotate]
type = Transform
transform = ROTATE
vector_value = '-45 0 0'
depends_on = rotate4
[../]
[./rotate1]
type = Transform
transform = ROTATE
vector_value = '0 0 82'
[../]
[./rotate3]
type = Transform
transform = ROTATE
vector_value = '0 36 0'
depends_on = rotate2
[../]
[./rotate4]
type = Transform
transform = ROTATE
vector_value = '0 0 -82'
depends_on = rotate3
[../]
[./rotate2]
type = Transform
transform = ROTATE
vector_value = '0 -36 0'
depends_on = rotate1
[../]
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./bottom]
type = DirichletBC
variable = u
boundary = down_left
value = 0
[../]
[./top]
type = DirichletBC
variable = u
boundary = up_right
value = 1
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
test/tests/restrictable/api_test/block_restrictable.i
[Mesh]
type = FileMesh
file = rectangle.e
dim = 2
[]
[Variables]
[./u]
block = '1 2'
[../]
[]
[Kernels]
[./diff]
type = BlkResTestDiffusion
variable = u
block = '1 2'
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = 1
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = 2
value = 1
[../]
[]
[Materials]
[./mat0]
type = GenericConstantMaterial
block = '1'
prop_names = 'a b'
prop_values = '1 2'
[../]
[./mat1]
type = GenericConstantMaterial
block = '2'
prop_names = 'a'
prop_values = '10'
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
test/tests/materials/output/output_block.i
[Mesh]
type = FileMesh
file = rectangle.e
dim = 2
uniform_refine = 1
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = CoefDiffusion
variable = u
coef = 0.5
[../]
[./time]
type = TimeDerivative
variable = u
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = 1
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = 2
value = 2
[../]
[]
[Materials]
[./block_1]
type = OutputTestMaterial
block = 1
output_properties = 'real_property tensor_property'
outputs = exodus
variable = u
[../]
[./block_2]
type = OutputTestMaterial
block = 2
output_properties = 'vector_property tensor_property'
outputs = exodus
variable = u
[../]
[]
[Executioner]
type = Transient
num_steps = 5
dt = 0.1
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
test/tests/materials/has_material/has_block_prop.i
[Mesh]
type = FileMesh
file = rectangle.e
[]
[Variables]
[./u]
[../]
[]
[Kernels]
active = 'u_diff'
[./u_diff]
type = MatCoefDiffusion
variable = u
block = '1 2'
conductivity = k
[../]
[]
[BCs]
[./left]
type = NeumannBC
variable = u
boundary = 1
value = 1
[../]
[./right]
type = DirichletBC
variable = u
boundary = 2
value = 0
[../]
[]
[Materials]
[./right]
type = GenericConstantMaterial
block = 2
prop_names = 'k k_right'
prop_values = '1 2'
[../]
[./left]
type = GenericConstantMaterial
block = 1
prop_names = 'k'
prop_values = '0.1'
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
[]
[Outputs]
execute_on = 'timestep_end'
exodus = true
[]
test/tests/auxkernels/solution_aux/solution_aux_exodus_direct.i
[Mesh]
type = FileMesh
file = cubesource.e
# The SolutionUserObject uses the copy_nodal_solution() capability
# of the Exodus reader, and therefore won't work if the initial mesh
# has been renumbered (it will be reunumbered if you are running with
# DistributedMesh in parallel). Hence, we restrict this test to run with
# ReplicatedMesh only.
parallel_type = replicated
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
initial_condition = 0.0
[../]
[]
[AuxVariables]
[./nn]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[AuxKernels]
[./nn]
type = SolutionAux
solution = soln
variable = nn
scale_factor = 2.0
direct = true
[../]
[]
[UserObjects]
[./soln]
type = SolutionUserObject
mesh = cubesource.e
system_variables = source_nodal
timestep = 2
[../]
[]
[BCs]
[./stuff]
type = DirichletBC
variable = u
boundary = '1 2'
value = 0.0
[../]
[]
[Executioner]
type = Transient
solve_type = 'NEWTON'
l_max_its = 800
nl_rel_tol = 1e-10
num_steps = 50
end_time = 5
dt = 0.5
[]
[Outputs]
execute_on = 'timestep_end'
exodus = true
[]
modules/tensor_mechanics/test/tests/truss/truss_2d.i
#
# Truss in two dimensional space
#
# The truss is made of five equilateral triangles supported at each end.
# The truss starts at (0,0). At (1,0), there is a point load of 25.
# The reactions are therefore
# Ryleft = 2/3 * 25 = 16.7
# Ryright = 1/3 * 25 = 8.33
# The area of each member is 0.8.
# Statics gives the stress in each member. For example, for element 6 (from
# (0,0) to (1/2,sqrt(3)/2)), the force is
# f = 2/3 * 25 * 2/sqrt(3) = 100/3/sqrt(3) (compressive)
# and the stress is
# s = -100/3/sqrt(3)/0.8 = -24.06
#
[Mesh]
type = FileMesh
file = truss_2d.e
displacements = 'disp_x disp_y'
[]
[Variables]
[./disp_x]
order = FIRST
family = LAGRANGE
[../]
[./disp_y]
order = FIRST
family = LAGRANGE
[../]
[]
[AuxVariables]
[./axial_stress]
order = CONSTANT
family = MONOMIAL
[../]
[./e_over_l]
order = CONSTANT
family = MONOMIAL
[../]
[./area]
order = CONSTANT
family = MONOMIAL
# initial_condition = 1.0
[../]
[./react_x]
order = FIRST
family = LAGRANGE
[../]
[./react_y]
order = FIRST
family = LAGRANGE
[../]
[./react_z]
order = FIRST
family = LAGRANGE
[../]
[]
[Functions]
[./x2]
type = PiecewiseLinear
x = '0 1 2 3'
y = '0 .5 1 1'
[../]
[./y2]
type = PiecewiseLinear
x = '0 1 2 3'
y = '0 0 .5 1'
[../]
[]
[BCs]
[./fixx1]
type = DirichletBC
variable = disp_x
boundary = 1
value = 0
[../]
[./fixy1]
type = DirichletBC
variable = disp_y
boundary = 1
value = 0
[../]
[./fixy4]
type = DirichletBC
variable = disp_y
boundary = 4
value = 0
[../]
[]
[DiracKernels]
[./pull]
type = ConstantPointSource
value = -25
point = '1 0 0'
variable = disp_y
[../]
[]
[AuxKernels]
[./axial_stress]
type = MaterialRealAux
block = 1
property = axial_stress
variable = axial_stress
[../]
[./e_over_l]
type = MaterialRealAux
block = 1
property = e_over_l
variable = e_over_l
[../]
[./area]
type = ConstantAux
block = 1
variable = area
value = 0.8
execute_on = 'initial timestep_begin'
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
solve_type = PJFNK
petsc_options_iname = '-pc_type -ksp_gmres_restart'
petsc_options_value = 'jacobi 101'
nl_max_its = 15
nl_rel_tol = 1e-8
nl_abs_tol = 1e-10
dt = 1
num_steps = 1
end_time = 1
[]
[Kernels]
[./solid_x]
type = StressDivergenceTensorsTruss
block = 1
displacements = 'disp_x disp_y'
component = 0
variable = disp_x
area = area
save_in = react_x
[../]
[./solid_y]
type = StressDivergenceTensorsTruss
block = 1
displacements = 'disp_x disp_y'
component = 1
variable = disp_y
area = area
save_in = react_y
[../]
[]
[Materials]
[./linelast]
type = LinearElasticTruss
block = 1
youngs_modulus = 1e6
displacements = 'disp_x disp_y'
[../]
[]
[Outputs]
exodus = true
[]
test/tests/mesh_modifiers/add_side_sets/cylinder_points.i
[Mesh]
type = FileMesh
file = cylinder.e
# This MeshModifier currently only works with ReplicatedMesh.
# For more information, refer to #2129.
parallel_type = replicated
[]
# Mesh Modifiers
[MeshModifiers]
[./add_side_sets]
type = SideSetsFromPoints
points = '0 0 0.5
0.1 0 0
0 0 -0.5'
new_boundary = 'top side bottom'
[../]
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./bottom]
type = DirichletBC
variable = u
boundary = bottom
value = 0
[../]
[./top]
type = DirichletBC
variable = u
boundary = top
value = 1
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
modules/richards/test/tests/excav/ex01.i
###########################################
# #
# THIS EXAMPLE CONTAINS AN EXCAVATION #
# #
###########################################
# Easiest way of figuring out what's happening:
# Run this example, load into paraview, take
# a slice through (0,0,0) with normal (0,0,1),
# colour by pressure and play the animation.
# This mesh has an interior sideset called excav_bdy
[Mesh]
type = FileMesh
file = ex01_input.e
[]
# This is a boundary condition acting on excav_bdy
# All it does is to set the pressure to p_excav=0
# at places on excav_bdy wherever excav_fcn tells it to.
[BCs]
[./excav_bdy]
type = RichardsExcav
boundary = excav_bdy
p_excav = 0.0
variable = pressure
excav_geom_function = excav_fcn
[../]
[]
[Functions]
# excav_fcn controls where to set pressure=p_excav
# You supply start and end positions and times and
# by a linear interpolation these define the position
# of the coal face at all times
[./excav_fcn]
type = RichardsExcavGeom
start_posn = '0 -500 0'
start_time = 0
end_posn = '0 -300 0'
end_time = 6E6
active_length = 1E4
[../]
# mass_bal_fcn calculates the mass balance
[./mass_bal_fcn]
type = ParsedFunction
value = abs((mi-fout-mf)/2/(mi+mf))
vars = 'mi mf fout'
vals = 'mass_init mass_final flux_out'
[../]
# initial pressure - unimportant in this example
[./initial_pressure]
type = ParsedFunction
value = -10000*(z-100)
[../]
[]
# following is needed by postprocessors, kernels, etc
# unimportant in this example
[GlobalParams]
richardsVarNames_UO = PPNames
[]
# following does the calculation of relevant
# masses and mass-flux to the excavation
[Postprocessors]
# note that this is calculated at beginning of timestep
[./mass_init]
type = RichardsMass
variable = pressure
execute_on = 'initial timestep_begin'
[../]
# note this is calculated at end of timestep
[./mass_final]
type = RichardsMass
variable = pressure
execute_on = timestep_end
[../]
# this is what calculates the mass flux to the excavation
# it is calculating it for boundary=excav_bdy, and the
# excavation time-dependence is set through the excav_fcn
[./flux_out]
type = RichardsExcavFlow
boundary = excav_bdy
variable = pressure
excav_geom_function = excav_fcn
[../]
# mass_bal just outputs the result to screen
[./mass_bal]
type = FunctionValuePostprocessor
function = mass_bal_fcn
[../]
[]
######################################
# #
# THE FOLLOWING STUFF IS STANDARD #
# #
######################################
[UserObjects]
[./PPNames]
type = RichardsVarNames
richards_vars = pressure
[../]
[./DensityConstBulk]
type = RichardsDensityConstBulk
dens0 = 1000
bulk_mod = 2E9
[../]
[./Seff1VG]
type = RichardsSeff1VG
m = 0.8
al = 1E-5
[../]
[./RelPermPower]
type = RichardsRelPermPower
simm = 0.0
n = 2
[../]
[./Saturation]
type = RichardsSat
s_res = 0
sum_s_res = 0
[../]
[./SUPGstandard]
type = RichardsSUPGstandard
p_SUPG = 1E+2
[../]
[]
[Variables]
active = 'pressure'
[./pressure]
order = FIRST
family = LAGRANGE
[../]
[]
[ICs]
[./p_ic]
type = FunctionIC
variable = pressure
function = initial_pressure
[../]
[]
[AuxVariables]
[./Seff1VG_Aux]
[../]
[]
[Kernels]
active = 'richardsf richardst'
[./richardst]
type = RichardsMassChange
variable = pressure
[../]
[./richardsf]
type = RichardsFlux
variable = pressure
[../]
[]
[Materials]
[./all]
type = RichardsMaterial
block = '1 2 3 4'
viscosity = 1E-3
mat_porosity = 0.1
mat_permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-15'
density_UO = DensityConstBulk
relperm_UO = RelPermPower
sat_UO = Saturation
seff_UO = Seff1VG
SUPG_UO = SUPGstandard
gravity = '0 0 -10'
linear_shape_fcns = true
[../]
[]
[AuxKernels]
[./Seff1VG_AuxK]
type = RichardsSeffAux
variable = Seff1VG_Aux
seff_UO = Seff1VG
pressure_vars = pressure
[../]
[]
[Preconditioning]
[./usual]
type = SMP
full = true
petsc_options = '-snes_converged_reason'
petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
petsc_options_value = 'bcgs bjacobi 1E-13 1E-14 10000 30'
[../]
[]
[Executioner]
type = Transient
end_time = 6E6
dt = 3E6
solve_type = NEWTON
[]
[Outputs]
file_base = ex01
exodus = true
csv = true
[]
modules/porous_flow/test/tests/flux_limited_TVD_pflow/pffltvd_2D_trimesh.i
# Using flux-limited TVD advection ala Kuzmin and Turek, mploying PorousFlow Kernels and UserObjects, with superbee flux-limiter
# 2D version
[Mesh]
type = FileMesh
file = trimesh.msh
[]
[GlobalParams]
PorousFlowDictator = dictator
gravity = '0 0 0'
block = '50'
[]
[Variables]
[./porepressure]
[../]
[./tracer]
[../]
[]
[ICs]
[./porepressure]
type = FunctionIC
variable = porepressure
function = '1 - x'
[../]
[./tracer]
type = FunctionIC
variable = tracer
function = 'if(x<0.1,0,if(x>0.305,0,1))'
[../]
[]
[Kernels]
[./mass0]
type = PorousFlowMassTimeDerivative
fluid_component = 0
variable = tracer
[../]
[./flux0]
type = PorousFlowFluxLimitedTVDAdvection
variable = tracer
advective_flux_calculator = advective_flux_calculator_0
[../]
[./mass1]
type = PorousFlowMassTimeDerivative
fluid_component = 1
variable = porepressure
[../]
[./flux1]
type = PorousFlowFluxLimitedTVDAdvection
variable = porepressure
advective_flux_calculator = advective_flux_calculator_1
[../]
[]
[BCs]
[./constant_injection_porepressure]
type = PresetBC
variable = porepressure
value = 1
boundary = left
[../]
[./no_tracer_on_left]
type = PresetBC
variable = tracer
value = 0
boundary = left
[../]
[./remove_component_1]
type = PorousFlowPiecewiseLinearSink
variable = porepressure
boundary = right
fluid_phase = 0
pt_vals = '0 1E3'
multipliers = '0 1E3'
mass_fraction_component = 1
use_mobility = true
flux_function = 1E3
[../]
[./remove_component_0]
type = PorousFlowPiecewiseLinearSink
variable = tracer
boundary = right
fluid_phase = 0
pt_vals = '0 1E3'
multipliers = '0 1E3'
mass_fraction_component = 0
use_mobility = true
flux_function = 1E3
[../]
[]
[Modules]
[./FluidProperties]
[./the_simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 2E9
thermal_expansion = 0
viscosity = 1.0
density0 = 1000.0
[../]
[../]
[]
[UserObjects]
[./dictator]
type = PorousFlowDictator
porous_flow_vars = 'porepressure tracer'
number_fluid_phases = 1
number_fluid_components = 2
[../]
[./pc]
type = PorousFlowCapillaryPressureConst
[../]
[./advective_flux_calculator_0]
type = PorousFlowAdvectiveFluxCalculatorUnsaturatedMultiComponent
flux_limiter_type = superbee
fluid_component = 0
[../]
[./advective_flux_calculator_1]
type = PorousFlowAdvectiveFluxCalculatorUnsaturatedMultiComponent
flux_limiter_type = superbee
fluid_component = 1
[../]
[]
[Materials]
[./temperature]
type = PorousFlowTemperature
[../]
[./ppss]
type = PorousFlow1PhaseP
porepressure = porepressure
capillary_pressure = pc
[../]
[./massfrac]
type = PorousFlowMassFraction
mass_fraction_vars = tracer
[../]
[./simple_fluid]
type = PorousFlowSingleComponentFluid
fp = the_simple_fluid
phase = 0
[../]
[./relperm]
type = PorousFlowRelativePermeabilityConst
phase = 0
[../]
[./porosity]
type = PorousFlowPorosity
porosity_zero = 0.1
[../]
[./permeability]
type = PorousFlowPermeabilityConst
permeability = '1E-2 0 0 0 1E-2 0 0 0 1E-2'
[../]
[]
[Preconditioning]
active = basic
[./basic]
type = SMP
full = true
petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = ' asm lu NONZERO 2'
[../]
[./preferred_but_might_not_be_installed]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
[../]
[]
[VectorPostprocessors]
[./tracer]
type = LineValueSampler
start_point = '0 0 0'
end_point = '1 0.04 0'
num_points = 101
sort_by = x
variable = tracer
[../]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 6
dt = 6E-2
nl_abs_tol = 1E-8
timestep_tolerance = 1E-3
[]
[Outputs]
exodus = true
csv = true
print_linear_residuals = false
execute_on = final
[]
modules/tensor_mechanics/test/tests/beam/action/2_block.i
# Test for LineElementAction on multiple blocks
# 2 beams of length 1m are fixed at one end and a force of 1e-4 N
# is applied at the other end of the beams. Beam 1 is in block 1
# and beam 2 is in block 2. All the material properties for the two
# beams are identical. The moment of inertia of beam 2 is twice that
# of beam 1.
# Since the end displacement of a cantilever beam is inversely proportional
# to the moment of inertia, the y displacement at the end of beam 1 should be twice
# that of beam 2.
[Mesh]
type = FileMesh
file = 2_beam_block.e
displacements = 'disp_x disp_y disp_z'
[]
[BCs]
[./fixx1]
type = DirichletBC
variable = disp_x
boundary = 1
value = 0.0
[../]
[./fixy1]
type = DirichletBC
variable = disp_y
boundary = 1
value = 0.0
[../]
[./fixz1]
type = DirichletBC
variable = disp_z
boundary = 1
value = 0.0
[../]
[./fixr1]
type = DirichletBC
variable = rot_x
boundary = 1
value = 0.0
[../]
[./fixr2]
type = DirichletBC
variable = rot_y
boundary = 1
value = 0.0
[../]
[./fixr3]
type = DirichletBC
variable = rot_z
boundary = 1
value = 0.0
[../]
[]
[NodalKernels]
[./force_1]
type = ConstantRate
variable = disp_y
boundary = 2
rate = 1e-4
[../]
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
solve_type = PJFNK
line_search = 'none'
nl_max_its = 15
nl_rel_tol = 1e-10
nl_abs_tol = 1e-8
dt = 1
dtmin = 1
end_time = 2
[]
[Modules/TensorMechanics/LineElementMaster]
[./block_1]
add_variables = true
displacements = 'disp_x disp_y disp_z'
rotations = 'rot_x rot_y rot_z'
# Geometry parameters
area = 0.5
Iy = 1e-5
Iz = 1e-5
y_orientation = '0.0 1.0 0.0'
block = 1
[../]
[./block_2]
add_variables = true
displacements = 'disp_x disp_y disp_z'
rotations = 'rot_x rot_y rot_z'
# Geometry parameters
area = 0.5
Iy = 2e-5
Iz = 2e-5
y_orientation = '0.0 1.0 0.0'
block = 2
[../]
[]
[Materials]
[./stress]
type = ComputeBeamResultants
block = '1 2'
[../]
[./elasticity_1]
type = ComputeElasticityBeam
youngs_modulus = 2.0
poissons_ratio = 0.3
shear_coefficient = 1.0
block = '1 2'
[../]
[]
[Postprocessors]
[./disp_y_1]
type = PointValue
point = '1.0 0.0 0.0'
variable = disp_y
[../]
[./disp_y_2]
type = PointValue
point = '1.0 1.0 0.0'
variable = disp_y
[../]
[]
[Outputs]
exodus = true
[]
test/tests/auxkernels/solution_aux/solution_aux_exodus_interp_restart1.i
[Mesh]
# This test uses SolutionUserObject which doesn't work with DistributedMesh.
type = FileMesh
file = cubesource.e
parallel_type = replicated
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
initial_condition = 0.0
[../]
[]
[AuxVariables]
[./nn]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[AuxKernels]
[./nn]
type = SolutionAux
variable = nn
solution = soln
[../]
[]
[UserObjects]
[./soln]
type = SolutionUserObject
mesh = cubesource.e
system_variables = source_nodal
execute_on = 'initial timestep_begin'
[../]
[]
[BCs]
[./stuff]
type = DirichletBC
variable = u
boundary = '1 2'
value = 0.0
[../]
[]
[Executioner]
type = Transient
solve_type = NEWTON
l_max_its = 800
nl_rel_tol = 1e-10
num_steps = 5
end_time = 5
dt = 0.5
[]
[Outputs]
execute_on = 'timestep_end'
exodus = true
checkpoint = true
[]
modules/tensor_mechanics/test/tests/CylindricalRankTwoAux/test.i
[Mesh]
type = FileMesh
file = circle.e
[]
[MeshModifiers]
[./cnode]
type = AddExtraNodeset
coord = '1000.0 0.0'
new_boundary = 10
[../]
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[]
[AuxVariables]
[./T]
[../]
[./stress_rr]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_tt]
order = CONSTANT
family = MONOMIAL
[../]
[]
[ICs]
[./T_IC]
type = FunctionIC
variable = T
function = '1000-0.7*sqrt(x^2+y^2)'
[../]
[]
[Kernels]
[./TensorMechanics]
displacements = 'disp_x disp_y'
[../]
[]
[AuxKernels]
[./stress_rr]
type = CylindricalRankTwoAux
variable = stress_rr
rank_two_tensor = stress
index_j = 0
index_i = 0
center_point = '0 0 0'
[../]
[./stress_tt]
type = CylindricalRankTwoAux
variable = stress_tt
rank_two_tensor = stress
index_j = 1
index_i = 1
center_point = '0 0 0'
[../]
[]
[BCs]
[./outer_x]
type = PresetBC
variable = disp_x
boundary = 2
value = 0
[../]
[./outer_y]
type = PresetBC
variable = disp_y
boundary = '2 10'
value = 0
[../]
[]
[Materials]
[./iso_C]
type = ComputeElasticityTensor
fill_method = symmetric_isotropic
C_ijkl = '2.15e5 0.74e5'
block = 1
[../]
[./strain]
type = ComputeSmallStrain
displacements = 'disp_x disp_y'
block = 1
eigenstrain_names = eigenstrain
[../]
[./stress]
type = ComputeLinearElasticStress
block = 1
[../]
[./thermal_strain]
type= ComputeThermalExpansionEigenstrain
thermal_expansion_coeff = 1e-6
temperature = T
stress_free_temperature = 273
block = 1
eigenstrain_name = eigenstrain
[../]
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
petsc_options_value = 'hypre boomeramg 101'
l_max_its = 30
nl_max_its = 10
nl_abs_tol = 1e-9
nl_rel_tol = 1e-14
l_tol = 1e-4
[]
[Outputs]
exodus = true
perf_graph = true
[]
modules/combined/test/tests/poro_mechanics/borehole_highres.i
# Poroelastic response of a borehole.
#
# HIGHRES VERSION: this version gives good agreement with the analytical solution, but it takes a while so is a "heavy" test
#
# A fully-saturated medium contains a fluid with a homogeneous porepressure,
# but an anisitropic insitu stress. A infinitely-long borehole aligned with
# the $$z$$ axis is instanteously excavated. The borehole boundary is
# stress-free and allowed to freely drain. This problem is analysed using
# plane-strain conditions (no $$z$$ displacement).
#
# The solution in Laplace space is found in E Detournay and AHD Cheng "Poroelastic response of a borehole in a non-hydrostatic stress field". International Journal of Rock Mechanics and Mining Sciences and Geomechanics Abstracts 25 (1988) 171-182. In the small-time limit, the Laplace transforms may be performed. There is one typo in the paper. Equation (A4)'s final term should be -(a/r)\sqrt(4ct/(a^2\pi)), and not +(a/r)\sqrt(4ct/(a^2\pi)).
#
# Because realistic parameters are chosen (below),
# the residual for porepressure is much smaller than
# the residuals for the displacements. Therefore the
# scaling parameter is chosen. Also note that the
# insitu stresses are effective stresses, not total
# stresses, but the solution in the above paper is
# expressed in terms of total stresses.
#
# Here are the problem's parameters, and their values:
# Borehole radius. a = 1
# Rock's Lame lambda. la = 0.5E9
# Rock's Lame mu, which is also the Rock's shear modulus. mu = G = 1.5E9
# Rock bulk modulus. K = la + 2*mu/3 = 1.5E9
# Drained Poisson ratio. nu = (3K - 2G)/(6K + 2G) = 0.125
# Rock bulk compliance. 1/K = 0.66666666E-9
# Fluid bulk modulus. Kf = 0.7171315E9
# Fluid bulk compliance. 1/Kf = 1.39444444E-9
# Rock initial porosity. phi0 = 0.3
# Biot coefficient. alpha = 0.65
# Biot modulus. M = 1/(phi0/Kf + (alpha - phi0)(1 - alpha)/K) = 2E9
# Undrained bulk modulus. Ku = K + alpha^2*M = 2.345E9
# Undrained Poisson ratio. nuu = (3Ku - 2G)/(6Ku + 2G) = 0.2364
# Skempton coefficient. B = alpha*M/Ku = 0.554
# Fluid mobility (rock permeability/fluid viscosity). k = 1E-12
[Mesh]
type = FileMesh
file = borehole_highres_input.e
[]
[GlobalParams]
displacements = 'disp_x disp_y disp_z'
porepressure = porepressure
block = 1
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[./disp_z]
[../]
[./porepressure]
scaling = 1E9 # Notice the scaling, to make porepressure's kernels roughly of same magnitude as disp's kernels
[../]
[]
[GlobalParams]
volumetric_locking_correction=true
[]
[ICs]
[./initial_p]
type = ConstantIC
variable = porepressure
value = 1E6
[../]
[]
[BCs]
[./fixed_outer_x]
type = PresetBC
variable = disp_x
value = 0
boundary = outer
[../]
[./fixed_outer_y]
type = PresetBC
variable = disp_y
value = 0
boundary = outer
[../]
[./plane_strain]
type = PresetBC
variable = disp_z
value = 0
boundary = 'zmin zmax'
[../]
[./borehole_wall]
type = DirichletBC
variable = porepressure
value = 0
boundary = bh_wall
[../]
[]
[AuxVariables]
[./stress_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./tot_yy]
order = CONSTANT
family = MONOMIAL
[../]
[]
[AuxKernels]
[./stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
[../]
[./tot_yy]
type = ParsedAux
args = 'stress_yy porepressure'
execute_on = timestep_end
variable = tot_yy
function = 'stress_yy-0.65*porepressure'
[../]
[]
[Kernels]
[./grad_stress_x]
type = StressDivergenceTensors
variable = disp_x
component = 0
[../]
[./grad_stress_y]
type = StressDivergenceTensors
variable = disp_y
component = 1
[../]
[./grad_stress_z]
type = StressDivergenceTensors
variable = disp_z
component = 2
[../]
[./poro_x]
type = PoroMechanicsCoupling
variable = disp_x
component = 0
[../]
[./poro_y]
type = PoroMechanicsCoupling
variable = disp_y
component = 1
[../]
[./poro_z]
type = PoroMechanicsCoupling
variable = disp_z
component = 2
[../]
[./poro_timederiv]
type = PoroFullSatTimeDerivative
variable = porepressure
[../]
[./darcy_flow]
type = CoefDiffusion
variable = porepressure
coef = 1E-12
[../]
[]
[Materials]
[./elasticity_tensor]
type = ComputeElasticityTensor
C_ijkl = '0.5E9 1.5E9'
# bulk modulus is lambda + 2*mu/3 = 0.5 + 2*1.5/3 = 1.5E9
fill_method = symmetric_isotropic
[../]
[./strain]
type = ComputeFiniteStrain
displacements = 'disp_x disp_y disp_z'
eigenstrain_names = ini_stress
[../]
[./ini_stress]
type = ComputeEigenstrainFromInitialStress
initial_stress = '-1.35E6 0 0 0 -3.35E6 0 0 0 0' # remember this is the effective stress
eigenstrain_name = ini_stress
[../]
[./no_plasticity]
type = ComputeFiniteStrainElasticStress
[../]
[./poro_material]
type = PoroFullSatMaterial
porosity0 = 0.3
biot_coefficient = 0.65
solid_bulk_compliance = 0.6666666666667E-9
fluid_bulk_compliance = 1.3944444444444E-9
constant_porosity = false
[../]
[]
[Postprocessors]
[./p00]
type = PointValue
variable = porepressure
point = '1.00 0 0'
outputs = csv_p
[../]
[./p01]
type = PointValue
variable = porepressure
point = '1.01 0 0'
outputs = csv_p
[../]
[./p02]
type = PointValue
variable = porepressure
point = '1.02 0 0'
outputs = csv_p
[../]
[./p03]
type = PointValue
variable = porepressure
point = '1.03 0 0'
outputs = csv_p
[../]
[./p04]
type = PointValue
variable = porepressure
point = '1.04 0 0'
outputs = csv_p
[../]
[./p05]
type = PointValue
variable = porepressure
point = '1.05 0 0'
outputs = csv_p
[../]
[./p06]
type = PointValue
variable = porepressure
point = '1.06 0 0'
outputs = csv_p
[../]
[./p07]
type = PointValue
variable = porepressure
point = '1.07 0 0'
outputs = csv_p
[../]
[./p08]
type = PointValue
variable = porepressure
point = '1.08 0 0'
outputs = csv_p
[../]
[./p09]
type = PointValue
variable = porepressure
point = '1.09 0 0'
outputs = csv_p
[../]
[./p10]
type = PointValue
variable = porepressure
point = '1.10 0 0'
outputs = csv_p
[../]
[./p11]
type = PointValue
variable = porepressure
point = '1.11 0 0'
outputs = csv_p
[../]
[./p12]
type = PointValue
variable = porepressure
point = '1.12 0 0'
outputs = csv_p
[../]
[./p13]
type = PointValue
variable = porepressure
point = '1.13 0 0'
outputs = csv_p
[../]
[./p14]
type = PointValue
variable = porepressure
point = '1.14 0 0'
outputs = csv_p
[../]
[./p15]
type = PointValue
variable = porepressure
point = '1.15 0 0'
outputs = csv_p
[../]
[./p16]
type = PointValue
variable = porepressure
point = '1.16 0 0'
outputs = csv_p
[../]
[./p17]
type = PointValue
variable = porepressure
point = '1.17 0 0'
outputs = csv_p
[../]
[./p18]
type = PointValue
variable = porepressure
point = '1.18 0 0'
outputs = csv_p
[../]
[./p19]
type = PointValue
variable = porepressure
point = '1.19 0 0'
outputs = csv_p
[../]
[./p20]
type = PointValue
variable = porepressure
point = '1.20 0 0'
outputs = csv_p
[../]
[./p21]
type = PointValue
variable = porepressure
point = '1.21 0 0'
outputs = csv_p
[../]
[./p22]
type = PointValue
variable = porepressure
point = '1.22 0 0'
outputs = csv_p
[../]
[./p23]
type = PointValue
variable = porepressure
point = '1.23 0 0'
outputs = csv_p
[../]
[./p24]
type = PointValue
variable = porepressure
point = '1.24 0 0'
outputs = csv_p
[../]
[./p25]
type = PointValue
variable = porepressure
point = '1.25 0 0'
outputs = csv_p
[../]
[./s00]
type = PointValue
variable = disp_x
point = '1.00 0 0'
outputs = csv_s
[../]
[./s01]
type = PointValue
variable = disp_x
point = '1.01 0 0'
outputs = csv_s
[../]
[./s02]
type = PointValue
variable = disp_x
point = '1.02 0 0'
outputs = csv_s
[../]
[./s03]
type = PointValue
variable = disp_x
point = '1.03 0 0'
outputs = csv_s
[../]
[./s04]
type = PointValue
variable = disp_x
point = '1.04 0 0'
outputs = csv_s
[../]
[./s05]
type = PointValue
variable = disp_x
point = '1.05 0 0'
outputs = csv_s
[../]
[./s06]
type = PointValue
variable = disp_x
point = '1.06 0 0'
outputs = csv_s
[../]
[./s07]
type = PointValue
variable = disp_x
point = '1.07 0 0'
outputs = csv_s
[../]
[./s08]
type = PointValue
variable = disp_x
point = '1.08 0 0'
outputs = csv_s
[../]
[./s09]
type = PointValue
variable = disp_x
point = '1.09 0 0'
outputs = csv_s
[../]
[./s10]
type = PointValue
variable = disp_x
point = '1.10 0 0'
outputs = csv_s
[../]
[./s11]
type = PointValue
variable = disp_x
point = '1.11 0 0'
outputs = csv_s
[../]
[./s12]
type = PointValue
variable = disp_x
point = '1.12 0 0'
outputs = csv_s
[../]
[./s13]
type = PointValue
variable = disp_x
point = '1.13 0 0'
outputs = csv_s
[../]
[./s14]
type = PointValue
variable = disp_x
point = '1.14 0 0'
outputs = csv_s
[../]
[./s15]
type = PointValue
variable = disp_x
point = '1.15 0 0'
outputs = csv_s
[../]
[./s16]
type = PointValue
variable = disp_x
point = '1.16 0 0'
outputs = csv_s
[../]
[./s17]
type = PointValue
variable = disp_x
point = '1.17 0 0'
outputs = csv_s
[../]
[./s18]
type = PointValue
variable = disp_x
point = '1.18 0 0'
outputs = csv_s
[../]
[./s19]
type = PointValue
variable = disp_x
point = '1.19 0 0'
outputs = csv_s
[../]
[./s20]
type = PointValue
variable = disp_x
point = '1.20 0 0'
outputs = csv_s
[../]
[./s21]
type = PointValue
variable = disp_x
point = '1.21 0 0'
outputs = csv_s
[../]
[./s22]
type = PointValue
variable = disp_x
point = '1.22 0 0'
outputs = csv_s
[../]
[./s23]
type = PointValue
variable = disp_x
point = '1.23 0 0'
outputs = csv_s
[../]
[./s24]
type = PointValue
variable = disp_x
point = '1.24 0 0'
outputs = csv_s
[../]
[./s25]
type = PointValue
variable = disp_x
point = '1.25 0 0'
outputs = csv_s
[../]
[./t00]
type = PointValue
variable = tot_yy
point = '1.00 0 0'
outputs = csv_t
[../]
[./t01]
type = PointValue
variable = tot_yy
point = '1.01 0 0'
outputs = csv_t
[../]
[./t02]
type = PointValue
variable = tot_yy
point = '1.02 0 0'
outputs = csv_t
[../]
[./t03]
type = PointValue
variable = tot_yy
point = '1.03 0 0'
outputs = csv_t
[../]
[./t04]
type = PointValue
variable = tot_yy
point = '1.04 0 0'
outputs = csv_t
[../]
[./t05]
type = PointValue
variable = tot_yy
point = '1.05 0 0'
outputs = csv_t
[../]
[./t06]
type = PointValue
variable = tot_yy
point = '1.06 0 0'
outputs = csv_t
[../]
[./t07]
type = PointValue
variable = tot_yy
point = '1.07 0 0'
outputs = csv_t
[../]
[./t08]
type = PointValue
variable = tot_yy
point = '1.08 0 0'
outputs = csv_t
[../]
[./t09]
type = PointValue
variable = tot_yy
point = '1.09 0 0'
outputs = csv_t
[../]
[./t10]
type = PointValue
variable = tot_yy
point = '1.10 0 0'
outputs = csv_t
[../]
[./t11]
type = PointValue
variable = tot_yy
point = '1.11 0 0'
outputs = csv_t
[../]
[./t12]
type = PointValue
variable = tot_yy
point = '1.12 0 0'
outputs = csv_t
[../]
[./t13]
type = PointValue
variable = tot_yy
point = '1.13 0 0'
outputs = csv_t
[../]
[./t14]
type = PointValue
variable = tot_yy
point = '1.14 0 0'
outputs = csv_t
[../]
[./t15]
type = PointValue
variable = tot_yy
point = '1.15 0 0'
outputs = csv_t
[../]
[./t16]
type = PointValue
variable = tot_yy
point = '1.16 0 0'
outputs = csv_t
[../]
[./t17]
type = PointValue
variable = tot_yy
point = '1.17 0 0'
outputs = csv_t
[../]
[./t18]
type = PointValue
variable = tot_yy
point = '1.18 0 0'
outputs = csv_t
[../]
[./t19]
type = PointValue
variable = tot_yy
point = '1.19 0 0'
outputs = csv_t
[../]
[./t20]
type = PointValue
variable = tot_yy
point = '1.20 0 0'
outputs = csv_t
[../]
[./t21]
type = PointValue
variable = tot_yy
point = '1.21 0 0'
outputs = csv_t
[../]
[./t22]
type = PointValue
variable = tot_yy
point = '1.22 0 0'
outputs = csv_t
[../]
[./t23]
type = PointValue
variable = tot_yy
point = '1.23 0 0'
outputs = csv_t
[../]
[./t24]
type = PointValue
variable = tot_yy
point = '1.24 0 0'
outputs = csv_t
[../]
[./t25]
type = PointValue
variable = tot_yy
point = '1.25 0 0'
outputs = csv_t
[../]
[./dt]
type = FunctionValuePostprocessor
outputs = console
function = 2*t
[../]
[]
[Preconditioning]
[./andy]
type = SMP
full = true
petsc_options = '-snes_monitor -snes_linesearch_monitor'
petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it -sub_pc_type -sub_pc_factor_shift_type'
petsc_options_value = 'gmres asm 1E0 1E-10 200 500 lu NONZERO'
[../]
[]
[Executioner]
type = Transient
solve_type = Newton
start_time = 0
end_time = 0.3
dt = 0.1
#[./TimeStepper]
# type = PostprocessorDT
# postprocessor = dt
# dt = 0.003
#[../]
[]
[Outputs]
execute_on = 'timestep_end'
file_base = borehole_highres
exodus = true
sync_times = '0.003 0.3'
[./csv_p]
file_base = borehole_highres_p
type = CSV
[../]
[./csv_s]
file_base = borehole_highres_s
type = CSV
[../]
[./csv_t]
file_base = borehole_highres_t
type = CSV
[../]
[]
modules/tensor_mechanics/test/tests/truss/truss_hex_action.i
# This test is designed to check
# whether truss element works well with other multi-dimensional element
# e.g. the hex element in this case, by assigning different block number
# to different types of elements.
[Mesh]
type = FileMesh
file = truss_hex.e
displacements = 'disp_x disp_y disp_z'
[]
[Variables]
[./disp_x]
order = FIRST
family = LAGRANGE
[../]
[./disp_y]
order = FIRST
family = LAGRANGE
[../]
[./disp_z]
order = FIRST
family = LAGRANGE
[../]
[]
[AuxVariables]
[./axial_stress]
order = CONSTANT
family = MONOMIAL
[../]
[./e_over_l]
order = CONSTANT
family = MONOMIAL
[../]
[./area]
order = CONSTANT
family = MONOMIAL
[../]
[./react_x]
order = FIRST
family = LAGRANGE
[../]
[./react_y]
order = FIRST
family = LAGRANGE
[../]
[./react_z]
order = FIRST
family = LAGRANGE
[../]
[]
[Functions]
[./x2]
type = PiecewiseLinear
x = '0 1 2 3'
y = '0 .5 1 1'
[../]
[./y2]
type = PiecewiseLinear
x = '0 1 2 3'
y = '0 0 .5 1'
[../]
[]
[BCs]
[./fixx1]
type = DirichletBC
variable = disp_x
boundary = 1
value = 0.0
[../]
[./fixy1]
type = DirichletBC
variable = disp_y
boundary = 1
value = 0
[../]
[./fixz1]
type = DirichletBC
variable = disp_z
boundary = 1
value = 0
[../]
[./fixx2]
type = DirichletBC
variable = disp_x
boundary = 2
value = 0
[../]
[./fixz2]
type = DirichletBC
variable = disp_z
boundary = 2
value = 0
[../]
[./fixDummyHex_x]
type = DirichletBC
variable = disp_x
boundary = 1000
value = 0
[../]
[./fixDummyHex_y]
type = DirichletBC
variable = disp_y
boundary = 1000
value = 0
[../]
[./fixDummyHex_z]
type = DirichletBC
variable = disp_z
boundary = 1000
value = 0
[../]
[]
[DiracKernels]
[./pull]
type = ConstantPointSource
value = -25
point = '0 -2 0'
variable = disp_y
[../]
[]
[AuxKernels]
[./axial_stress]
type = MaterialRealAux
block = '1 2'
property = axial_stress
variable = axial_stress
[../]
[./e_over_l]
type = MaterialRealAux
block = '1 2'
property = e_over_l
variable = e_over_l
[../]
[./area1]
type = ConstantAux
block = 1
variable = area
value = 1.0
execute_on = 'initial timestep_begin'
[../]
[./area2]
type = ConstantAux
block = 2
variable = area
value = 0.25
execute_on = 'initial timestep_begin'
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
solve_type = PJFNK
petsc_options_iname = '-pc_type -ksp_gmres_restart'
petsc_options_value = 'jacobi 101'
nl_max_its = 15
nl_rel_tol = 1e-8
nl_abs_tol = 1e-10
dt = 1
num_steps = 1
end_time = 1
[]
[Kernels]
[./TensorMechanics]
block = 1000
displacements = 'disp_x disp_y disp_z'
[../]
[]
[Modules/TensorMechanics/LineElementMaster]
[./block]
truss = true
displacements = 'disp_x disp_y disp_z'
area = area
block = '1 2'
save_in = 'react_x react_y react_z'
[../]
[]
[Materials]
[./elasticity_tensor]
type = ComputeIsotropicElasticityTensor
block = 1000
youngs_modulus = 1e6
poissons_ratio = 0
[../]
[./strain]
type = ComputeSmallStrain
block = 1000
displacements = 'disp_x disp_y disp_z'
[../]
[./stress]
type = ComputeLinearElasticStress
block = 1000
[../]
[./linelast]
type = LinearElasticTruss
block = '1 2'
displacements = 'disp_x disp_y disp_z'
youngs_modulus = 1e6
[../]
[]
[Outputs]
file_base = 'truss_hex_out'
exodus = true
[]
modules/richards/test/tests/theis/th01.i
# fully-saturated
# production
[Mesh]
type = FileMesh
file = th01_input.e
[]
[GlobalParams]
richardsVarNames_UO = PPNames
[]
[Functions]
[./dts]
type = PiecewiseLinear
y = '0.5 1 2 10'
x = '0 1 10 100'
[../]
[]
[UserObjects]
[./PPNames]
type = RichardsVarNames
richards_vars = pressure
[../]
[./DensityConstBulk]
type = RichardsDensityConstBulk
dens0 = 1000
bulk_mod = 2E9
[../]
[./Seff1VG]
type = RichardsSeff1VG
m = 0.8
al = 1E-5
[../]
[./RelPermPower]
type = RichardsRelPermPower
simm = 0.0
n = 2
[../]
[./Saturation]
type = RichardsSat
s_res = 0
sum_s_res = 0
[../]
[./SUPGstandard]
type = RichardsSUPGstandard
p_SUPG = 1E-5
[../]
[./total_outflow_mass]
type = RichardsSumQuantity
[../]
[]
[Variables]
active = 'pressure'
[./pressure]
order = FIRST
family = LAGRANGE
[../]
[]
[ICs]
[./p_ic]
type = FunctionIC
variable = pressure
function = initial_pressure
[../]
[]
[AuxVariables]
[./Seff1VG_Aux]
[../]
[]
[Kernels]
active = 'richardsf richardst'
[./richardst]
type = RichardsMassChange
variable = pressure
[../]
[./richardsf]
type = RichardsFlux
variable = pressure
[../]
[]
[DiracKernels]
[./bh]
type = RichardsPolyLineSink
pressures = '-1E9 1E9'
fluxes = '200 200'
point_file = th01.points
SumQuantityUO = total_outflow_mass
variable = pressure
[../]
[]
[Postprocessors]
[./flow_report]
type = RichardsPlotQuantity
uo = total_outflow_mass
[../]
[./p50]
type = PointValue
variable = pressure
point = '50 0 0'
execute_on = timestep_end
[../]
[]
[Functions]
[./initial_pressure]
type = ParsedFunction
value = 1E5
[../]
[]
[Materials]
[./all]
type = RichardsMaterial
block = 1
viscosity = 1E-3
mat_porosity = 0.1
mat_permeability = '1E-10 0 0 0 1E-10 0 0 0 1E-10'
density_UO = DensityConstBulk
relperm_UO = RelPermPower
sat_UO = Saturation
seff_UO = Seff1VG
SUPG_UO = SUPGstandard
gravity = '0 0 0'
linear_shape_fcns = true
[../]
[]
[AuxKernels]
[./Seff1VG_AuxK]
type = RichardsSeffAux
variable = Seff1VG_Aux
seff_UO = Seff1VG
pressure_vars = pressure
[../]
[]
[Preconditioning]
[./usual]
type = SMP
full = true
petsc_options = '-snes_converged_reason'
petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
petsc_options_value = 'bcgs bjacobi 1E-6 1E-10 10000 30'
[../]
[]
[Executioner]
type = Transient
end_time = 100
solve_type = NEWTON
[./TimeStepper]
type = FunctionDT
function = dts
[../]
[]
[Outputs]
execute_on = 'timestep_end'
file_base = th01
csv = true
[]
modules/tensor_mechanics/test/tests/beam/static/euler_finite_rot_y.i
# Large strain/large rotation cantilever beam test
# A 300 N point load is applied at the end of a 4 m long cantilever beam.
# Young's modulus (E) = 1e4
# Shear modulus (G) = 1e8
# shear coefficient (k) = 1.0
# Poisson's ratio (nu) = -0.99995
# Area (A) = 1.0
# Iy = Iz = 0.16
# The dimensionless parameter alpha = kAGL^2/EI = 1e6
# Since the value of alpha is quite high, the beam behaves like
# a thin beam where shear effects are not significant.
# Beam deflection:
# small strain+rot = 3.998 m (exact 4.0)
# large strain + small rotation = -0.05 m in x and 3.74 m in y
# large rotations + small strain = -0.92 m in x and 2.38 m in y
# large rotations + large strain = -0.954 m in x and 2.37 m in y (exact -1.0 m in x and 2.4 m in y)
# References:
# K. E. Bisshopp and D.C. Drucker, Quaterly of Applied Mathematics, Vol 3, No. 3, 1945.
[Mesh]
type = FileMesh
file = beam_finite_rot_test_2.e
displacements = 'disp_x disp_y disp_z'
[]
[Variables]
[./disp_x]
order = FIRST
family = LAGRANGE
[../]
[./disp_y]
order = FIRST
family = LAGRANGE
[../]
[./disp_z]
order = FIRST
family = LAGRANGE
[../]
[./rot_x]
order = FIRST
family = LAGRANGE
[../]
[./rot_y]
order = FIRST
family = LAGRANGE
[../]
[./rot_z]
order = FIRST
family = LAGRANGE
[../]
[]
[BCs]
[./fixx1]
type = DirichletBC
variable = disp_x
boundary = 1
value = 0.0
[../]
[./fixy1]
type = DirichletBC
variable = disp_y
boundary = 1
value = 0.0
[../]
[./fixz1]
type = DirichletBC
variable = disp_z
boundary = 1
value = 0.0
[../]
[./fixr1]
type = DirichletBC
variable = rot_x
boundary = 1
value = 0.0
[../]
[./fixr2]
type = DirichletBC
variable = rot_y
boundary = 1
value = 0.0
[../]
[./fixr3]
type = DirichletBC
variable = rot_z
boundary = 1
value = 0.0
[../]
[]
[NodalKernels]
[./force_y2]
type = UserForcingFunctionNodalKernel
variable = disp_y
boundary = 2
function = force
[../]
[]
[Functions]
[./force]
type = PiecewiseLinear
x = '0.0 2.0 8.0'
y = '0.0 300.0 300.0'
[../]
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
solve_type = PJFNK
line_search = 'none'
petsc_options = '-snes_ksp_ew'
petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
petsc_options_value = '201 hypre boomeramg 4'
nl_max_its = 50
nl_rel_tol = 1e-9
nl_abs_tol = 1e-7
l_max_its = 50
dt = 0.05
end_time = 2.1
[]
[Kernels]
[./solid_disp_x]
type = StressDivergenceBeam
block = '1'
displacements = 'disp_x disp_y disp_z'
rotations = 'rot_x rot_y rot_z'
component = 0
variable = disp_x
[../]
[./solid_disp_y]
type = StressDivergenceBeam
block = '1'
displacements = 'disp_x disp_y disp_z'
rotations = 'rot_x rot_y rot_z'
component = 1
variable = disp_y
[../]
[./solid_disp_z]
type = StressDivergenceBeam
block = '1'
displacements = 'disp_x disp_y disp_z'
rotations = 'rot_x rot_y rot_z'
component = 2
variable = disp_z
[../]
[./solid_rot_x]
type = StressDivergenceBeam
block = '1'
displacements = 'disp_x disp_y disp_z'
rotations = 'rot_x rot_y rot_z'
component = 3
variable = rot_x
[../]
[./solid_rot_y]
type = StressDivergenceBeam
block = '1'
displacements = 'disp_x disp_y disp_z'
rotations = 'rot_x rot_y rot_z'
component = 4
variable = rot_y
[../]
[./solid_rot_z]
type = StressDivergenceBeam
block = '1'
displacements = 'disp_x disp_y disp_z'
rotations = 'rot_x rot_y rot_z'
component = 5
variable = rot_z
[../]
[]
[Materials]
[./elasticity]
type = ComputeElasticityBeam
youngs_modulus = 1e4
poissons_ratio = -0.99995
shear_coefficient = 1.0
block = 1
[../]
[./strain]
type = ComputeFiniteBeamStrain
block = '1'
displacements = 'disp_x disp_y disp_z'
rotations = 'rot_x rot_y rot_z'
area = 1.0
Ay = 0.0
Az = 0.0
Iy = 0.16
Iz = 0.16
y_orientation = '0.0 1.0 0.0'
large_strain = true
[../]
[./stress]
type = ComputeBeamResultants
block = 1
[../]
[]
[Postprocessors]
[./disp_x]
type = PointValue
point = '4.0 0.0 0.0'
variable = disp_x
[../]
[./disp_y]
type = PointValue
point = '4.0 0.0 0.0'
variable = disp_y
[../]
[./rot_z]
type = PointValue
point = '4.0 0.0 0.0'
variable = rot_z
[../]
[]
[Outputs]
exodus = true
perf_graph = true
[]
modules/combined/test/tests/phase_field_fracture/void2d_iso.i
[Mesh]
type = FileMesh
file = void2d_mesh.xda
[]
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Modules]
[./TensorMechanics]
[./Master]
[./All]
add_variables = true
strain = SMALL
additional_generate_output = stress_yy
[../]
[../]
[../]
[./PhaseField]
[./Nonconserved]
[./c]
free_energy = F
mobility = L
kappa = kappa_op
[../]
[../]
[../]
[]
[Functions]
[./tfunc]
type = ParsedFunction
value = t
[../]
[./void_prop_func]
type = ParsedFunction
value = 'rad:=0.2;m:=50;r:=sqrt(x^2+y^2);1-exp(-(r/rad)^m)+1e-8'
[../]
[./gb_prop_func]
type = ParsedFunction
value = 'rad:=0.2;thk:=0.05;m:=50;sgnx:=1-exp(-(x/rad)^m);v:=sgnx*exp(-(y/thk)^m);0.005*(1-v)+0.001*v'
[../]
[]
[Kernels]
[./solid_x]
type = PhaseFieldFractureMechanicsOffDiag
variable = disp_x
component = 0
c = c
[../]
[./solid_y]
type = PhaseFieldFractureMechanicsOffDiag
variable = disp_y
component = 1
c = c
[../]
[]
[BCs]
[./ydisp]
type = FunctionPresetBC
variable = disp_y
boundary = top
function = tfunc
[../]
[./yfix]
type = PresetBC
variable = disp_y
boundary = bottom
value = 0
[../]
[./xfix]
type = PresetBC
variable = disp_x
boundary = left
value = 0
[../]
[]
[Materials]
[./pfbulkmat]
type = GenericConstantMaterial
prop_names = 'l visco'
prop_values = '0.01 0.1'
[../]
[./pfgc]
type = GenericFunctionMaterial
prop_names = 'gc_prop'
prop_values = 'gb_prop_func'
[../]
[./elasticity_tensor]
type = ComputeElasticityTensor
C_ijkl = '120.0 80.0'
fill_method = symmetric_isotropic
elasticity_tensor_prefactor = void_prop_func
[../]
[./define_mobility]
type = ParsedMaterial
material_property_names = 'gc_prop visco'
f_name = L
function = '1.0/(gc_prop * visco)'
[../]
[./define_kappa]
type = ParsedMaterial
material_property_names = 'gc_prop l'
f_name = kappa_op
function = 'gc_prop * l'
[../]
[./damage_stress]
type = ComputeLinearElasticPFFractureStress
c = c
E_name = 'elastic_energy'
D_name = 'degradation'
F_name = 'fracture_energy'
decomposition_type = strain_spectral
[../]
[./degradation]
type = DerivativeParsedMaterial
f_name = degradation
args = 'c'
function = '(1.0-c)^2*(1.0 - eta) + eta'
constant_names = 'eta'
constant_expressions = '0.0'
derivative_order = 2
[../]
[./fracture_energy]
type = DerivativeParsedMaterial
f_name = fracture_energy
args = 'c'
material_property_names = 'gc_prop l'
function = 'c^2 * gc_prop / 2 / l'
derivative_order = 2
[../]
[./fracture_driving_energy]
type = DerivativeSumMaterial
args = c
sum_materials = 'elastic_energy fracture_energy'
derivative_order = 2
f_name = F
[../]
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
solve_type = PJFNK
petsc_options_iname = '-pc_type -sub_pc_type -pc_asm_overlap'
petsc_options_value = 'asm lu 1'
nl_rel_tol = 1e-9
nl_max_its = 10
l_tol = 1e-4
l_max_its = 40
dt = 1e-4
num_steps = 2
[]
[Outputs]
exodus = true
[]
modules/heat_conduction/test/tests/meshed_gap_thermal_contact/meshed_annulus_thermal_contact.i
[Mesh]
type = FileMesh
file = meshed_annulus.e
dim = 2
[]
[Variables]
[./temp]
block = '1 3'
initial_condition = 1.0
[../]
[]
[Kernels]
[./hc]
type = HeatConduction
variable = temp
block = '1 3'
[../]
[./source]
type = HeatSource
variable = temp
block = 3
value = 10.0
[../]
[]
[BCs]
[./outside]
type = DirichletBC
variable = temp
boundary = 1
value = 1.0
[../]
[]
[ThermalContact]
[./gap_conductivity]
type = GapHeatTransfer
variable = temp
master = 2
slave = 3
gap_conductivity = 0.5
[../]
[]
[Materials]
[./hcm]
type = HeatConductionMaterial
block = '1 3'
temp = temp
thermal_conductivity = 1
[../]
[]
[Problem]
type = FEProblem
kernel_coverage_check = false
material_coverage_check = false
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
[./out]
type = Exodus
[../]
[]
test/tests/misc/line_source/line_source.i
[Mesh]
type = FileMesh
file = line_source_cube.e
dim = 2
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
block = bulk
[../]
[./heating]
type = BodyForce
variable = u
function = 1
block = heater
[../]
[]
[BCs]
[./outside]
type = DirichletBC
variable = u
boundary = outside
value = 0
[../]
[]
[Materials]
[./diffusivity]
type = GenericConstantMaterial
block = 'bulk heater'
prop_names = diffusivity
prop_values = 1
[../]
[]
[Postprocessors]
[./total_flux]
type = SideFluxIntegral
variable = u
boundary = outside
diffusivity = diffusivity
[../]
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
python/chigger/tests/input/mug_blocks.i
[Mesh]
type = FileMesh
file = mug.e
[]
[MeshModifiers]
[./subdomains]
type = SubdomainBoundingBox
top_right = '3 3 3'
bottom_left = '0 -3 -2.1'
block_id = '76'
[../]
[]
[Variables]
[./convected]
order = FIRST
family = LAGRANGE
[../]
[./diffused]
order = FIRST
family = LAGRANGE
[../]
[]
[AuxVariables]
[./aux_elem]
order = CONSTANT
family = MONOMIAL
[../]
[]
[Kernels]
[./diff_convected]
type = Diffusion
variable = convected
[../]
[./conv]
# Couple a variable into the convection kernel using local_name = simulationg_name syntax
type = Convection
variable = convected
velocity = '1 1 1'
[../]
[./diff_diffused]
type = Diffusion
variable = diffused
[../]
[./diff_t]
type = TimeDerivative
variable = diffused
[../]
[./conv_t]
type = TimeDerivative
variable = convected
block = '76'
[../]
[]
[BCs]
[./bottom_convected]
type = DirichletBC
variable = convected
boundary = bottom
value = 1
[../]
[./top_convected]
type = DirichletBC
variable = convected
boundary = top
value = 0
[../]
[./bottom_diffused]
type = DirichletBC
variable = diffused
boundary = bottom
value = 2
[../]
[./top_diffused]
type = DirichletBC
variable = diffused
boundary = top
value = 0
[../]
[]
[Postprocessors]
[./func_pp]
type = FunctionValuePostprocessor
function = 2*t
[../]
[]
[Executioner]
# Preconditioned JFNK (default)
type = Transient
num_steps = 20
solve_type = PJFNK
dt = 0.1
[]
[Outputs]
exodus = true
[]
[ICs]
[./aux_ic]
variable = aux_elem
max = 10
seed = 2
type = RandomIC
[../]
[]
test/tests/auxkernels/element_aux_boundary/element_aux_boundary.i
[Mesh]
type = FileMesh
file = rectangle.e
dim = 2
uniform_refine = 2
[]
[Variables]
[./u]
[../]
[]
[AuxVariables]
[./real_property]
family = MONOMIAL
order = CONSTANT
[../]
[]
[AuxKernels]
[./real_property]
type = MaterialRealAux
variable = real_property
property = real_property
boundary = '1 2'
[../]
[]
[Kernels]
[./diff]
type = CoefDiffusion
variable = u
coef = 1
[../]
[./time]
type = TimeDerivative
variable = u
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = 1
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = 2
value = 1
[../]
[]
[Materials]
[./boundary_1]
type = OutputTestMaterial
boundary = 1
real_factor = 2
variable = u
[../]
[./boundary_2]
type = OutputTestMaterial
boundary = 2
real_factor = 2
variable = u
[../]
[]
[Executioner]
type = Transient
num_steps = 2
dt = 0.1
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
test/tests/geomsearch/fake_block_to_boundary/fake_block_to_boundary.i
[Mesh]
type = FileMesh
file = fake_geom_search.e
dim = 2
[]
[Variables]
[./u]
[../]
[]
[AuxVariables]
[./distance_to_left_nodes]
[../]
[./penetration_to_left]
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[AuxKernels]
[./nodal_distance_aux]
type = NearestNodeDistanceAux
variable = distance_to_left_nodes
boundary = 100
paired_boundary = left
[../]
[./penetration_aux]
type = PenetrationAux
variable = penetration_to_left
boundary = 100
paired_boundary = left
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = left
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = right
value = 1
[../]
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
test/tests/auxkernels/solution_aux/solution_aux_exodus_interp_direct.i
[Mesh]
type = FileMesh
file = cubesource.e
# The SolutionUserObject uses the copy_nodal_solution() capability
# of the Exodus reader, and therefore won't work if the initial mesh
# has been renumbered (it will be reunumbered if you are running with
# DistributedMesh in parallel). Hence, we restrict this test to run with
# ReplicatedMesh only.
parallel_type = replicated
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
initial_condition = 0.0
[../]
[]
[AuxVariables]
[./nn]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[AuxKernels]
[./nn]
type = SolutionAux
variable = nn
solution = soln
direct = true
from_variable = source_nodal
[../]
[]
[UserObjects]
[./soln]
type = SolutionUserObject
mesh = cubesource.e
system_variables = source_nodal
[../]
[]
[BCs]
[./stuff]
type = DirichletBC
variable = u
boundary = '1 2'
value = 0.0
[../]
[]
[Executioner]
type = Transient
solve_type = 'NEWTON'
l_max_its = 800
nl_rel_tol = 1e-10
num_steps = 50
end_time = 5
dt = 0.5
[]
[Outputs]
execute_on = 'timestep_end'
exodus = true
[]
modules/porous_flow/examples/flow_through_fractured_media/coarse.i
# Flow and solute transport along a fracture embedded in a porous matrix
# The fracture is represented by lower dimensional elements
# fracture aperture = 6e-4m
# fracture porosity = 6e-4m = phi * a
# fracture permeability = 1.8e-11 which is based on k=3e-8 from a**2/12, and k*a = 3e-8*6e-4
# matrix porosity = 0.1
# matrix permeanility = 1e-20
[Mesh]
type = FileMesh
file = 'coarse.e'
block_id = '1 2 3'
block_name = 'fracture matrix1 matrix2'
boundary_id = '1 2'
boundary_name = 'bottom top'
[]
[GlobalParams]
PorousFlowDictator = dictator
gravity = '0 0 0'
[]
[Variables]
[./pp]
[../]
[./massfrac0]
[../]
[]
[AuxVariables]
[./velocity_x]
family = MONOMIAL
order = CONSTANT
block = 'fracture'
[../]
[./velocity_y]
family = MONOMIAL
order = CONSTANT
block = 'fracture'
[../]
[]
[AuxKernels]
[./velocity_x]
type = PorousFlowDarcyVelocityComponentLowerDimensional
variable = velocity_x
component = x
aperture = 6E-4
[../]
[./velocity_y]
type = PorousFlowDarcyVelocityComponentLowerDimensional
variable = velocity_y
component = y
aperture = 6E-4
[../]
[]
[ICs]
[./massfrac0]
type = ConstantIC
variable = massfrac0
value = 0
[../]
[./pp_matrix]
type = ConstantIC
variable = pp
value = 1E6
[../]
[]
[BCs]
[./top]
type = PresetBC
value = 0
variable = massfrac0
boundary = top
[../]
[./bottom]
type = PresetBC
value = 1
variable = massfrac0
boundary = bottom
[../]
[./ptop]
type = PresetBC
variable = pp
boundary = top
value = 1e6
[../]
[./pbottom]
type = PresetBC
variable = pp
boundary = bottom
value = 1.002e6
[../]
[]
[Kernels]
[./mass0]
type = PorousFlowMassTimeDerivative
fluid_component = 1
variable = pp
[../]
[./adv0]
type = PorousFlowAdvectiveFlux
fluid_component = 1
variable = pp
[../]
[./diff0]
type = PorousFlowDispersiveFlux
fluid_component = 1
variable = pp
disp_trans = 0
disp_long = 0
[../]
[./mass1]
type = PorousFlowMassTimeDerivative
fluid_component = 0
variable = massfrac0
[../]
[./adv1]
type = PorousFlowAdvectiveFlux
fluid_component = 0
variable = massfrac0
[../]
[./diff1]
type = PorousFlowDispersiveFlux
fluid_component = 0
variable = massfrac0
disp_trans = 0
disp_long = 0
[../]
[]
[UserObjects]
[./dictator]
type = PorousFlowDictator
porous_flow_vars = 'pp massfrac0'
number_fluid_phases = 1
number_fluid_components = 2
[../]
[]
[Modules]
[./FluidProperties]
[./simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 2e9
density0 = 1000
thermal_expansion = 0
viscosity = 1e-3
[../]
[../]
[]
[Materials]
[./temperature]
type = PorousFlowTemperature
[../]
[./ppss]
type = PorousFlow1PhaseFullySaturated
porepressure = pp
[../]
[./massfrac]
type = PorousFlowMassFraction
mass_fraction_vars = massfrac0
[../]
[./simple_fluid]
type = PorousFlowSingleComponentFluid
fp = simple_fluid
phase = 0
[../]
[./poro_fracture]
type = PorousFlowPorosityConst
porosity = 6e-4 # = a * phif
block = 'fracture'
[../]
[./poro_matrix]
type = PorousFlowPorosityConst
porosity = 0.1
block = 'matrix1 matrix2'
[../]
[./diff1]
type = PorousFlowDiffusivityConst
diffusion_coeff = '1e-9 1e-9'
tortuosity = 1.0
block = 'fracture'
[../]
[./diff2]
type = PorousFlowDiffusivityConst
diffusion_coeff = '1e-9 1e-9'
tortuosity = 0.1
block = 'matrix1 matrix2'
[../]
[./permeability_fracture]
type = PorousFlowPermeabilityConst
permeability = '1.8e-11 0 0 0 1.8e-11 0 0 0 1.8e-11' # 1.8e-11 = a * kf
block = 'fracture'
[../]
[./permeability_matrix]
type = PorousFlowPermeabilityConst
permeability = '1e-20 0 0 0 1e-20 0 0 0 1e-20'
block = 'matrix1 matrix2'
[../]
[./relp]
type = PorousFlowRelativePermeabilityConst
phase = 0
[../]
[]
[Preconditioning]
[./basic]
type = SMP
full = true
petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = 'gmres asm lu NONZERO 2 '
[../]
[]
[Executioner]
type = Transient
solve_type = NEWTON
end_time = 10
dt = 1
# controls for nonlinear iterations
nl_max_its = 15
nl_rel_tol = 1e-14
nl_abs_tol = 1e-9
[]
[VectorPostprocessors]
[./xmass]
type = LineValueSampler
start_point = '-0.5 0 0'
end_point = '0.5 0 0'
sort_by = x
num_points = 41
variable = massfrac0
outputs = csv
[../]
[]
[Outputs]
[./csv]
type = CSV
execute_on = 'final'
[../]
[]
modules/porous_flow/examples/flow_through_fractured_media/fine_thick_fracture_steady.i
# Using a single-dimensional mesh
# Steady-state porepressure distribution along a fracture in a porous matrix
# This is used to initialise the transient solute-transport simulation
[Mesh]
type = FileMesh
# The gold mesh is used to reduce the number of large files in the MOOSE repository.
# The porepressure is not read from the gold mesh
file = 'gold/fine_thick_fracture_steady_out.e'
block_id = '1 2 3'
block_name = 'fracture matrix1 matrix2'
boundary_id = '1 2'
boundary_name = 'bottom top'
[]
[GlobalParams]
PorousFlowDictator = dictator
gravity = '0 0 0'
[]
[Variables]
[./pp]
[../]
[]
[ICs]
[./pp]
type = ConstantIC
variable = pp
value = 1e6
[../]
[]
[BCs]
[./ptop]
type = PresetBC
variable = pp
boundary = top
value = 1e6
[../]
[./pbottom]
type = PresetBC
variable = pp
boundary = bottom
value = 1.002e6
[../]
[]
[Kernels]
[./adv0]
type = PorousFlowAdvectiveFlux
fluid_component = 0
variable = pp
[../]
[]
[UserObjects]
[./dictator]
type = PorousFlowDictator
porous_flow_vars = 'pp'
number_fluid_phases = 1
number_fluid_components = 1
[../]
[]
[Modules]
[./FluidProperties]
[./simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 2e9
density0 = 1000
thermal_expansion = 0
viscosity = 1e-3
[../]
[../]
[]
[Materials]
[./temperature]
type = PorousFlowTemperature
[../]
[./ppss]
type = PorousFlow1PhaseFullySaturated
porepressure = pp
[../]
[./massfrac]
type = PorousFlowMassFraction
[../]
[./simple_fluid]
type = PorousFlowSingleComponentFluid
fp = simple_fluid
phase = 0
[../]
[./relp]
type = PorousFlowRelativePermeabilityConst
phase = 0
[../]
[./permeability1]
type = PorousFlowPermeabilityConst
permeability = '3e-8 0 0 0 3e-8 0 0 0 3e-8' # the true permeability is used without scaling by aperture
block = 'fracture'
[../]
[./permeability2]
type = PorousFlowPermeabilityConst
permeability = '1e-20 0 0 0 1e-20 0 0 0 1e-20'
block = 'matrix1 matrix2'
[../]
[]
[Preconditioning]
active = basic
[./mumps_is_best_for_parallel_jobs]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
[../]
[./basic]
type = SMP
full = true
petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = 'gmres asm lu NONZERO 2 '
[../]
[]
[Executioner]
type = Steady
solve_type = NEWTON
# controls for nonlinear iterations
nl_abs_tol = 1e-9
nl_rel_tol = 1e-10
[]
[Outputs]
exodus = true
execute_on = 'timestep_end'
[]
test/tests/materials/output/output_boundary.i
[Mesh]
type = FileMesh
file = rectangle.e
dim = 2
uniform_refine = 2
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = CoefDiffusion
variable = u
coef = 1
[../]
[./time]
type = TimeDerivative
variable = u
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = 1
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = 2
value = 1
[../]
[]
[Materials]
[./block]
type = OutputTestMaterial
block = '1 2'
output_properties = tensor_property
variable = u
outputs = exodus
[../]
[./boundary_1]
type = OutputTestMaterial
boundary = 1
output_properties = real_property
outputs = exodus
variable = u
real_factor = 2
[../]
[./boundary_2]
type = OutputTestMaterial
boundary = 2
output_properties = 'real_property vector_property'
real_factor = 2
variable = u
outputs = exodus
[../]
[]
[Executioner]
type = Transient
num_steps = 5
dt = 0.1
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
modules/combined/examples/thermomechanics/circle_thermal_expansion_stress.i
# This example problem demonstrates coupling heat conduction with mechanics.
# A circular domain has as uniform heat source that increases with time
# and a fixed temperature on the outer boundary, resulting in a temperature gradient.
# This results in heterogeneous thermal expansion, where it is pinned in the center.
# Looking at the hoop stress demonstrates why fuel pellets have radial cracks
# that extend from the outer boundary to about halfway through the radius.
# The problem is run with length units of microns.
[Mesh]
#Circle mesh has a radius of 1000 units
type = FileMesh
file = circle.e
uniform_refine = 1
[]
[Variables]
# We solve for the temperature and the displacements
[./T]
initial_condition = 800
scaling = 1e7
[../]
[./disp_x]
[../]
[./disp_y]
[../]
[]
[AuxVariables]
[./radial_stress]
order = CONSTANT
family = MONOMIAL
[../]
[./hoop_stress]
order = CONSTANT
family = MONOMIAL
[../]
[]
[Kernels]
active = 'TensorMechanics htcond Q_function'
[./htcond] #Heat conduction equation
type = HeatConduction
variable = T
[../]
[./TensorMechanics] #Action that creates equations for disp_x and disp_y
displacements = 'disp_x disp_y'
[../]
[./Q_function] #Heat generation term
type = BodyForce
variable = T
value = 1
function = 0.8e-9*t
[../]
[]
[AuxKernels]
[./radial_stress] #Calculates radial stress from cartesian
type = CylindricalRankTwoAux
variable = radial_stress
rank_two_tensor = stress
index_j = 0
index_i = 0
center_point = '0 0 0'
[../]
[./hoop_stress] #Calculates hoop stress from cartesian
type = CylindricalRankTwoAux
variable = hoop_stress
rank_two_tensor = stress
index_j = 1
index_i = 1
center_point = '0 0 0'
[../]
[]
[BCs]
[./outer_T] #Temperature on outer edge is fixed at 800K
type = PresetBC
variable = T
boundary = 1
value = 800
[../]
[./outer_x] #Displacements in the x-direction are fixed in the center
type = PresetBC
variable = disp_x
boundary = 2
value = 0
[../]
[./outer_y] #Displacements in the y-direction are fixed in the center
type = PresetBC
variable = disp_y
boundary = 2
value = 0
[../]
[]
[Materials]
[./thcond] #Thermal conductivity is set to 5 W/mK
type = GenericConstantMaterial
block = 1
prop_names = 'thermal_conductivity'
prop_values = '5e-6'
[../]
[./iso_C] #Sets isotropic elastic constants
type = ComputeElasticityTensor
fill_method = symmetric_isotropic
C_ijkl = '2.15e5 0.74e5'
block = 1
[../]
[./strain] #We use small deformation mechanics
type = ComputeSmallStrain
displacements = 'disp_x disp_y'
block = 1
eigenstrain_names = eigenstrain
[../]
[./stress] #We use linear elasticity
type = ComputeLinearElasticStress
block = 1
[../]
[./thermal_strain]
type= ComputeThermalExpansionEigenstrain
thermal_expansion_coeff = 1e-6
temperature = T
stress_free_temperature = 273
block = 1
eigenstrain_name = eigenstrain
[../]
[]
[Executioner]
type = Transient
scheme = bdf2
num_steps = 10
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
petsc_options_value = 'hypre boomeramg 101'
l_max_its = 30
nl_max_its = 10
nl_abs_tol = 1e-9
l_tol = 1e-04
[]
[Outputs]
exodus = true
perf_graph = true
[]
test/tests/mesh_modifiers/mesh_extruder/extrude_remap_layer1.i
[Mesh]
type = FileMesh
file = multiblock.e
[]
[MeshModifiers]
[./extrude]
type = MeshExtruder
num_layers = 6
extrusion_vector = '0 0 2'
bottom_sideset = 'new_bottom'
top_sideset = 'new_top'
# Remap layers
existing_subdomains = '1 2 5'
layers = '1 3 5'
new_ids = '10 12 15
30 32 35
50 52 55'
[../]
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./bottom]
type = DirichletBC
variable = u
boundary = 'new_bottom'
value = 0
[../]
[./top]
type = DirichletBC
variable = u
boundary = 'new_top'
value = 1
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
[]
[Outputs]
exodus = true
[]
test/tests/mesh_modifiers/add_side_sets/cylinder_normals_fixed.i
[Mesh]
type = FileMesh
file = cylinder.e
# This MeshModifier currently only works with ReplicatedMesh.
# For more information, refer to #2129.
parallel_type = replicated
[]
# Mesh Modifiers
[MeshModifiers]
[./add_side_sets]
type = SideSetsFromNormals
normals = '0 1 0
0 -1 0'
new_boundary = 'front back'
# This parameter makes it so that we won't
# adjust the normal for each adjacent element.
fixed_normal = true
variance = 0.5
[../]
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./front]
type = DirichletBC
variable = u
boundary = front
value = 0
[../]
[./back]
type = DirichletBC
variable = u
boundary = back
value = 1
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
test/tests/materials/derivativematerialinterface/multiblock.i
[Mesh]
type = FileMesh
file = rectangle.e
[]
[Variables]
[./c]
[../]
[]
[Materials]
[./mat1]
type = DefaultMatPropConsumerMaterial
block = 1
[../]
[./mat2]
type = DefaultMatPropConsumerMaterial
block = 2
[../]
[./mat1b]
type = DefaultMatPropConsumerMaterial
mat_prop = prop2
block = 1
[../]
[./mat2b]
type = DefaultMatPropConsumerMaterial
mat_prop = prop2
block = 2
[../]
[./generic]
type = GenericConstantMaterial
block = '1 2'
prop_names = prop3
prop_values = 9
[../]
[./mat1c]
type = DefaultMatPropConsumerMaterial
mat_prop = prop3
block = 1
[../]
[./mat2c]
type = DefaultMatPropConsumerMaterial
mat_prop = prop3
block = 2
[../]
[]
[Kernels]
[./kern1]
type = DefaultMatPropConsumerKernel
variable = c
block = 1
[../]
[./kern2]
type = DefaultMatPropConsumerKernel
variable = c
block = 2
[../]
[./kern1b]
type = DefaultMatPropConsumerKernel
variable = c
mat_prop = prop3
block = 1
[../]
[./kern2b]
type = DefaultMatPropConsumerKernel
variable = c
mat_prop = prop3
block = 2
[../]
[]
[Executioner]
type = Steady
[]
[Debug]
show_material_props = true
[]
[Problem]
solve = false
[]
[Outputs]
exodus = true
[]
test/tests/restrictable/check_error/check_error.i
[Mesh]
type = FileMesh
file = rectangle.e
dim = 2
[]
[Variables]
[./u]
block = '1 2'
[../]
[]
[Kernels]
[./diff]
type = BlkResTestDiffusion
variable = u
block = '1 2'
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = 1
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = 2
value = 1
[../]
[]
[Materials]
[./mat0]
type = GenericConstantMaterial
block = '1'
prop_names = 'a b'
prop_values = '1 2'
[../]
[./mat1]
type = GenericConstantMaterial
block = '2'
prop_names = 'a'
prop_values = '10'
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
test/tests/mesh_modifiers/add_side_sets/cylinder_normals.i
###########################################################
# This is test of the Mesh Modification System. This
# test adds sidesets to a mesh based on geometric normals
# to the faces or edges of the mesh. In this case sidesets
# are added to the top, bottom and side of a cylinder.
#
# @Requirement F2.20
###########################################################
[Mesh]
type = FileMesh
file = cylinder.e
# This MeshModifier currently only works with ReplicatedMesh.
# For more information, refer to #2129.
parallel_type = replicated
[]
# Mesh Modifiers
[MeshModifiers]
[./add_side_sets]
type = SideSetsFromNormals
normals = '0 0 1
0 1 0
0 0 -1'
# This parameter allows the normal
# to vary slightly from adjacent element
# to element so that a sidset can follow
# a curve. It is false by default.
fixed_normal = false
new_boundary = 'top side bottom'
[../]
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./bottom]
type = DirichletBC
variable = u
boundary = bottom
value = 0
[../]
[./top]
type = DirichletBC
variable = u
boundary = top
value = 1
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
modules/porous_flow/test/tests/aux_kernels/darcy_velocity_lower.i
# checking that the PorousFlowDarcyVelocityComponentLowerDimensional AuxKernel works as expected
# for the fully-saturated case (relative-permeability = 1)
# The fractured_block.e has size = 10x10x10, and a fracturing running through its
# centre, with normal = (0, -sin(20deg), cos(20deg))
# Porepressure is initialised to grad(P) = (0, 0, 1)
# Fluid_density = 2
# viscosity = 10
# relative_permeability = 1
# permeability = (5, 5, 5) (in the bulk)
# permeability = (10, 10, 10) (in the fracture)
# aperture = 1
# gravity = (1, 0.5, 0.2)
# So Darcy velocity in the bulk = (1, 0.5, -0.3)
# in the fracture grad(P) = (0, 0.3213938, 0.11697778)
# In the fracture the projected gravity vector is
# tangential_gravity = (1, 0.5057899, 0.18409245)
# So the Darcy velocity in the fracture = (2, 0.690186, 0.251207)
[Mesh]
type = FileMesh
file = fractured_block.e
[]
[GlobalParams]
PorousFlowDictator = dictator
gravity = '1 0.5 0.2'
[]
[Variables]
[./pp]
[../]
[]
[ICs]
[./pinit]
type = FunctionIC
function = z
variable = pp
[../]
[]
[Kernels]
[./dummy]
type = TimeDerivative
variable = pp
[../]
[]
[AuxVariables]
[./bulk_vel_x]
order = CONSTANT
family = MONOMIAL
[../]
[./bulk_vel_y]
order = CONSTANT
family = MONOMIAL
[../]
[./bulk_vel_z]
order = CONSTANT
family = MONOMIAL
[../]
[./fracture_vel_x]
order = CONSTANT
family = MONOMIAL
block = 3
[../]
[./fracture_vel_y]
order = CONSTANT
family = MONOMIAL
block = 3
[../]
[./fracture_vel_z]
order = CONSTANT
family = MONOMIAL
block = 3
[../]
[]
[AuxKernels]
[./bulk_vel_x]
type = PorousFlowDarcyVelocityComponent
variable = bulk_vel_x
component = x
fluid_phase = 0
[../]
[./bulk_vel_y]
type = PorousFlowDarcyVelocityComponent
variable = bulk_vel_y
component = y
fluid_phase = 0
[../]
[./bulk_vel_z]
type = PorousFlowDarcyVelocityComponent
variable = bulk_vel_z
component = z
fluid_phase = 0
[../]
[./fracture_vel_x]
type = PorousFlowDarcyVelocityComponentLowerDimensional
variable = fracture_vel_x
component = x
fluid_phase = 0
[../]
[./fracture_vel_y]
type = PorousFlowDarcyVelocityComponentLowerDimensional
variable = fracture_vel_y
component = y
fluid_phase = 0
[../]
[./fracture_vel_z]
type = PorousFlowDarcyVelocityComponentLowerDimensional
variable = fracture_vel_z
component = z
fluid_phase = 0
[../]
[]
[UserObjects]
[./dictator]
type = PorousFlowDictator
porous_flow_vars = 'pp'
number_fluid_phases = 1
number_fluid_components = 1
[../]
[./pc]
type = PorousFlowCapillaryPressureConst
pc = 0
[../]
[]
[Modules]
[./FluidProperties]
[./simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 1E16
viscosity = 10
density0 = 2
thermal_expansion = 0
[../]
[../]
[]
[Postprocessors]
[./bulk_vel_x]
type = PointValue
variable = bulk_vel_x
point = '0 0 0'
[../]
[./bulk_vel_y]
type = PointValue
variable = bulk_vel_y
point = '0 0 0'
[../]
[./bulk_vel_z]
type = PointValue
variable = bulk_vel_z
point = '0 0 0'
[../]
[./fracture_vel_x]
type = ElementAverageValue
block = 3
variable = fracture_vel_x
[../]
[./fracture_vel_y]
type = ElementAverageValue
block = 3
variable = fracture_vel_y
[../]
[./fracture_vel_z]
type = ElementAverageValue
block = 3
variable = fracture_vel_z
[../]
[]
[Materials]
[./temperature]
type = PorousFlowTemperature
[../]
[./ppss]
type = PorousFlow1PhaseP
porepressure = pp
capillary_pressure = pc
[../]
[./simple_fluid]
type = PorousFlowSingleComponentFluid
fp = simple_fluid
phase = 0
[../]
[./permeability]
type = PorousFlowPermeabilityConst
permeability = '5 0 0 0 5 0 0 0 5'
block = '1 2'
[../]
[./permeability_fracture]
type = PorousFlowPermeabilityConst
permeability = '10 0 0 0 10 0 0 0 10'
block = 3
[../]
[./relperm]
type = PorousFlowRelativePermeabilityCorey
n = 2
phase = 0
[../]
[]
[Executioner]
type = Transient
dt = 1
end_time = 1
[]
[Outputs]
csv = true
[]
modules/richards/test/tests/theis/th21.i
# two-phase, fully-saturated
# production
[Mesh]
type = FileMesh
file = th01_input.e
[]
[GlobalParams]
richardsVarNames_UO = PPNames
[]
[Functions]
[./dts]
type = PiecewiseLinear
y = '0.5 1 2 10'
x = '0 1 10 100'
[../]
[]
[UserObjects]
[./PPNames]
type = RichardsVarNames
richards_vars = 'pwater pgas'
[../]
[./DensityWater]
type = RichardsDensityConstBulk
dens0 = 1000
bulk_mod = 2E9
[../]
[./DensityGas]
type = RichardsDensityConstBulk
dens0 = 1
bulk_mod = 2E6
[../]
[./SeffWater]
type = RichardsSeff2waterVG
m = 0.8
al = 1E-5
[../]
[./SeffGas]
type = RichardsSeff2gasVG
m = 0.8
al = 1E-5
[../]
[./RelPermWater]
type = RichardsRelPermPower
simm = 0.0
n = 2
[../]
[./RelPermGas]
type = RichardsRelPermPower
simm = 0.0
n = 3
[../]
[./SatWater]
type = RichardsSat
s_res = 0.0
sum_s_res = 0.0
[../]
[./SatGas]
type = RichardsSat
s_res = 0.0
sum_s_res = 0.0
[../]
[./SUPGwater]
type = RichardsSUPGstandard
p_SUPG = 1E-5
[../]
[./SUPGgas]
type = RichardsSUPGstandard
p_SUPG = 1E-5
[../]
[./total_outflow_mass]
type = RichardsSumQuantity
[../]
[]
[Variables]
[./pwater]
order = FIRST
family = LAGRANGE
[../]
[./pgas]
order = FIRST
family = LAGRANGE
[../]
[]
[ICs]
[./water_ic]
type = FunctionIC
variable = pwater
function = initial_pressure
[../]
[./gas_ic]
type = FunctionIC
variable = pgas
function = initial_pressure
[../]
[]
[AuxVariables]
[./Seff1VG_Aux]
[../]
[]
[Kernels]
active = 'richardsfwater richardstwater richardsfgas richardstgas'
[./richardstwater]
type = RichardsMassChange
variable = pwater
[../]
[./richardsfwater]
type = RichardsFlux
variable = pwater
[../]
[./richardstgas]
type = RichardsMassChange
variable = pgas
[../]
[./richardsfgas]
type = RichardsFlux
variable = pgas
[../]
[]
[AuxKernels]
[./Seff1VG_AuxK]
type = RichardsSeffAux
variable = Seff1VG_Aux
seff_UO = SeffWater
pressure_vars = 'pwater pgas'
[../]
[]
[DiracKernels]
[./bh]
type = RichardsPolyLineSink
pressures = '-1E9 1E9'
fluxes = '200 200'
point_file = th01.points
SumQuantityUO = total_outflow_mass
variable = pwater
[../]
[]
[Postprocessors]
[./flow_report]
type = RichardsPlotQuantity
uo = total_outflow_mass
[../]
[./p50]
type = PointValue
variable = pwater
point = '50 0 0'
execute_on = timestep_end
[../]
[]
[Functions]
[./initial_pressure]
type = ParsedFunction
value = 1E5
[../]
[]
[Materials]
[./all]
type = RichardsMaterial
block = 1
mat_porosity = 0.1
mat_permeability = '1E-10 0 0 0 1E-10 0 0 0 1E-10'
density_UO = 'DensityWater DensityGas'
relperm_UO = 'RelPermWater RelPermGas'
SUPG_UO = 'SUPGwater SUPGgas'
sat_UO = 'SatWater SatGas'
seff_UO = 'SeffWater SeffGas'
viscosity = '1E-3 1E-5'
gravity = '0 0 0'
linear_shape_fcns = true
[../]
[]
[Preconditioning]
[./usual]
type = SMP
full = true
petsc_options = '-snes_converged_reason'
petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
petsc_options_value = 'bcgs bjacobi 1E-6 1E-10 10000 30'
[../]
[]
[Executioner]
type = Transient
end_time = 100
solve_type = NEWTON
[./TimeStepper]
type = FunctionDT
function = dts
[../]
[]
[Outputs]
file_base = th21
csv = true
[]
modules/richards/test/tests/theis/th_lumped_02.i
# fully-saturated
# production
# lumped
[Mesh]
type = FileMesh
file = th02_input.e
[]
[GlobalParams]
richardsVarNames_UO = PPNames
density_UO = DensityConstBulk
relperm_UO = RelPermPower
sat_UO = Saturation
seff_UO = Seff1VG
SUPG_UO = SUPGstandard
[]
[Functions]
[./dts]
type = PiecewiseLinear
y = '1 2 4 20'
x = '0 1 10 100'
[../]
[]
[UserObjects]
[./PPNames]
type = RichardsVarNames
richards_vars = pressure
[../]
[./DensityConstBulk]
type = RichardsDensityConstBulk
dens0 = 1000
bulk_mod = 2E9
[../]
[./Seff1VG]
type = RichardsSeff1VG
m = 0.8
al = 1E-5
[../]
[./RelPermPower]
type = RichardsRelPermPower
simm = 0.0
n = 2
[../]
[./Saturation]
type = RichardsSat
s_res = 0
sum_s_res = 0
[../]
[./SUPGstandard]
type = RichardsSUPGstandard
p_SUPG = 1E-5
[../]
[./total_outflow_mass]
type = RichardsSumQuantity
[../]
[]
[Variables]
active = 'pressure'
[./pressure]
order = FIRST
family = LAGRANGE
[../]
[]
[ICs]
[./p_ic]
type = FunctionIC
variable = pressure
function = initial_pressure
[../]
[]
[AuxVariables]
[./Seff1VG_Aux]
[../]
[]
[Kernels]
active = 'richardsf richardst'
[./richardst]
type = RichardsLumpedMassChange
variable = pressure
[../]
[./richardsf]
type = RichardsFlux
variable = pressure
[../]
[]
[DiracKernels]
[./bh]
type = RichardsPolyLineSink
pressures = '-1E9 1E9'
fluxes = '200 200'
point_file = th01.points
SumQuantityUO = total_outflow_mass
variable = pressure
[../]
[]
[Postprocessors]
[./flow_report]
type = RichardsPlotQuantity
uo = total_outflow_mass
[../]
[./p50]
type = PointValue
variable = pressure
point = '50 0 0'
execute_on = 'initial timestep_end'
[../]
[]
[Functions]
[./initial_pressure]
type = ParsedFunction
value = 1E5
[../]
[]
[Materials]
[./all]
type = RichardsMaterial
block = 1
viscosity = 1E-3
mat_porosity = 0.1
mat_permeability = '1E-10 0 0 0 1E-10 0 0 0 1E-10'
gravity = '0 0 0'
linear_shape_fcns = true
[../]
[]
[AuxKernels]
[./Seff1VG_AuxK]
type = RichardsSeffAux
variable = Seff1VG_Aux
seff_UO = Seff1VG
pressure_vars = pressure
[../]
[]
[Preconditioning]
[./usual]
type = SMP
full = true
petsc_options = '-snes_converged_reason'
petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
petsc_options_value = 'bcgs bjacobi 1E-6 1E-10 10000 30'
[../]
[]
[Executioner]
type = Transient
end_time = 100
solve_type = NEWTON
[./TimeStepper]
type = FunctionDT
function = dts
[../]
[]
[Outputs]
file_base = th_lumped_02
csv = true
[]
modules/tensor_mechanics/examples/bridge/bridge_large_strain.i
#
# Bridge linear elasticity example
#
# This example models a bridge using linear elasticity.
# It can be either steel or concrete.
# Gravity is applied
# A pressure of 0.5 MPa is also applied
#
[Mesh]
displacements = 'disp_x disp_y disp_z' #Define displacements for deformed mesh
type = FileMesh #Read in mesh from file
file = bridge.e
boundary_id = '1 2 3 4 5 6' #Assign names to boundaries to make things clearer
boundary_name = 'top left right bottom1 bottom2 bottom3'
[]
[Variables]
[./disp_x]
order = FIRST
family = LAGRANGE
[../]
[./disp_y]
order = FIRST
family = LAGRANGE
[../]
[./disp_z]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./gravity_y]
#Gravity is applied to bridge
type = Gravity
variable = disp_y
value = -9.81
[../]
[./TensorMechanics]
#Stress divergence kernels
displacements = 'disp_x disp_y disp_z'
[../]
[]
[AuxVariables]
[./von_mises]
#Dependent variable used to visualize the Von Mises stress
order = CONSTANT
family = MONOMIAL
[../]
[]
[AuxKernels]
[./von_mises_kernel]
#Calculates the von mises stress and assigns it to von_mises
type = RankTwoScalarAux
variable = von_mises
rank_two_tensor = stress
execute_on = timestep_end
scalar_type = VonMisesStress
[../]
[]
[BCs]
[./Pressure]
[./load]
#Applies the pressure
boundary = top
factor = 5e5 # Pa
disp_x = disp_x
disp_y = disp_y
disp_z = disp_z
[../]
[../]
[./anchor_x]
#Anchors the bottom and sides against deformation in the x-direction
type = PresetBC
variable = disp_x
boundary = 'left right bottom1 bottom2 bottom3'
value = 0.0
[../]
[./anchor_y]
#Anchors the bottom and sides against deformation in the y-direction
type = PresetBC
variable = disp_y
boundary = 'left right bottom1 bottom2 bottom3'
value = 0.0
[../]
[./anchor_z]
#Anchors the bottom and sides against deformation in the z-direction
type = PresetBC
variable = disp_z
boundary = 'left right bottom1 bottom2 bottom3'
value = 0.0
[../]
[]
[Materials]
active = 'density_steel stress strain elasticity_tensor_steel'
[./elasticity_tensor_steel]
#Creates the elasticity tensor using steel parameters
youngs_modulus = 210e9 #Pa
poissons_ratio = 0.3
type = ComputeIsotropicElasticityTensor
block = 1
[../]
[./elasticity_tensor_concrete]
#Creates the elasticity tensor using concrete parameters
youngs_modulus = 16.5e9 #Pa
poissons_ratio = 0.2
type = ComputeIsotropicElasticityTensor
block = 1
[../]
[./strain]
#Computes the strain, assuming small strains
type = ComputeFiniteStrain
block = 1
displacements = 'disp_x disp_y disp_z'
[../]
[./stress]
#Computes the stress, using linear elasticity
type = ComputeFiniteStrainElasticStress
block = 1
[../]
[./density_steel]
#Defines the density of steel
type = GenericConstantMaterial
block = 1
prop_names = density
prop_values = 7850 # kg/m^3
[../]
[./density_concrete]
#Defines the density of concrete
type = GenericConstantMaterial
block = 1
prop_names = density
prop_values = 2400 # kg/m^3
[../]
[]
[Preconditioning]
[./SMP]
#Creates the entire Jacobian, for the Newton solve
type = SMP
full = true
[../]
[]
[Executioner]
#We solve a steady state problem using Newton's iteration
type = Transient
solve_type = NEWTON
nl_rel_tol = 1e-9
l_max_its = 30
l_tol = 1e-4
nl_max_its = 10
petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
petsc_options_value = 'hypre boomeramg 31'
dt = 0.1
num_steps = 1
[]
[Outputs]
exodus = true
perf_graph = true
[]
modules/tensor_mechanics/test/tests/mohr_coulomb/uni_axial2_planar.i
# same as uni_axial2 but with planar mohr-coulomb
[Mesh]
type = FileMesh
file = quarter_hole.e
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[./disp_z]
[../]
[]
[Kernels]
[./TensorMechanics]
displacements = 'disp_x disp_y disp_z'
[../]
[]
[BCs]
[./zmin_zzero]
type = PresetBC
variable = disp_z
boundary = 'zmin'
value = '0'
[../]
[./xmin_xzero]
type = PresetBC
variable = disp_x
boundary = 'xmin'
value = '0'
[../]
[./ymin_yzero]
type = PresetBC
variable = disp_y
boundary = 'ymin'
value = '0'
[../]
[./ymax_disp]
type = FunctionPresetBC
variable = disp_y
boundary = 'ymax'
function = '-1E-4*t'
[../]
[]
[AuxVariables]
[./stress_xx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xz]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yz]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zz]
order = CONSTANT
family = MONOMIAL
[../]
[./mc_int]
order = CONSTANT
family = MONOMIAL
[../]
[./yield_fcn]
order = CONSTANT
family = MONOMIAL
[../]
[]
[AuxKernels]
[./stress_xx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xx
index_i = 0
index_j = 0
[../]
[./stress_xy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xy
index_i = 0
index_j = 1
[../]
[./stress_xz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xz
index_i = 0
index_j = 2
[../]
[./stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
[../]
[./stress_yz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yz
index_i = 1
index_j = 2
[../]
[./stress_zz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zz
index_i = 2
index_j = 2
[../]
[./mc_int_auxk]
type = MaterialStdVectorAux
index = 0
property = plastic_internal_parameter
variable = mc_int
[../]
[./yield_fcn_auxk]
type = MaterialStdVectorAux
index = 0
property = plastic_yield_function
variable = yield_fcn
[../]
[]
[Postprocessors]
[./s_xx]
type = PointValue
point = '0.005 0.02 0.002'
variable = stress_xx
[../]
[./s_xy]
type = PointValue
point = '0.005 0.02 0.002'
variable = stress_xy
[../]
[./s_xz]
type = PointValue
point = '0.005 0.02 0.002'
variable = stress_xz
[../]
[./s_yy]
type = PointValue
point = '0.005 0.02 0.002'
variable = stress_yy
[../]
[./s_yz]
type = PointValue
point = '0.005 0.02 0.002'
variable = stress_yz
[../]
[./s_zz]
type = PointValue
point = '0.005 0.02 0.002'
variable = stress_zz
[../]
[./f]
type = PointValue
point = '0.005 0.02 0.002'
variable = yield_fcn
[../]
[]
[UserObjects]
[./coh]
type = TensorMechanicsHardeningConstant
value = 1E7
[../]
[./fric]
type = TensorMechanicsHardeningConstant
value = 2
convert_to_radians = true
[../]
[./dil]
type = TensorMechanicsHardeningConstant
value = 2
convert_to_radians = true
[../]
[./mc]
type = TensorMechanicsPlasticMohrCoulombMulti
cohesion = coh
friction_angle = fric
dilation_angle = dil
yield_function_tolerance = 1.0 # THIS IS HIGHER THAN THE SMOOTH CASE TO AVOID PRECISION-LOSS PROBLEMS!
shift = 1.0
internal_constraint_tolerance = 1E-9
use_custom_returnMap = false
[../]
[]
[Materials]
[./elasticity_tensor]
type = ComputeElasticityTensor
block = 1
fill_method = symmetric_isotropic
C_ijkl = '0 5E9' # young = 10Gpa, poisson = 0.0
[../]
[./strain]
type = ComputeIncrementalSmallStrain
block = 1
displacements = 'disp_x disp_y disp_z'
[../]
[./mc]
type = ComputeMultiPlasticityStress
block = 1
ep_plastic_tolerance = 1E-9
plastic_models = mc
max_NR_iterations = 100
deactivation_scheme = 'safe'
min_stepsize = 1
max_stepsize_for_dumb = 1
debug_fspb = crash
[../]
[]
# Preconditioning and Executioner options kindly provided by Andrea
[Preconditioning]
[./andy]
type = SMP
full = true
[../]
[]
[Executioner]
end_time = 0.5
dt = 0.1
solve_type = NEWTON
type = Transient
l_tol = 1E-2
# These are higher than non-multi case
nl_abs_tol = 1E-1
nl_rel_tol = 1E-5
l_max_its = 200
nl_max_its = 400
petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
petsc_options_value = ' asm 2 lu gmres 200'
[]
[Outputs]
file_base = uni_axial2_planar
[./exodus]
type = Exodus
hide = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz yield_fcn s_xx s_xy s_xz s_yy s_yz s_zz f'
[../]
[./csv]
type = CSV
interval = 1
[../]
[]
test/tests/materials/output/block_via_outputs.i
[Mesh]
type = FileMesh
file = rectangle.e
dim = 2
uniform_refine = 1
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = CoefDiffusion
variable = u
coef = 10
[../]
[./time]
type = TimeDerivative
variable = u
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = 1
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = 2
value = 1
[../]
[]
[Materials]
[./block_1]
type = OutputTestMaterial
block = 1
variable = u
[../]
[./block_2]
type = OutputTestMaterial
block = 2
variable = u
[../]
[]
[Executioner]
type = Transient
num_steps = 5
dt = 0.1
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
[./out]
type = Exodus
output_material_properties = true
show_material_properties = real_property
[../]
[]
test/tests/ics/check_error/two_ics_on_same_block_global.i
[Mesh]
type = FileMesh
file = 'rectangle.e'
[]
[Variables]
[./u]
[../]
[]
[ICs]
[./block]
type = ConstantIC
variable = u
value = 2
[../]
[./block2]
type = ConstantIC
variable = u
value = 0.5
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[Executioner]
type = Steady
[]
[Outputs]
[]
modules/tensor_mechanics/test/tests/finite_strain_elastic/elastic_rotation_test.i
#
# Rotation Test
#
# This test is designed to compute stress based on uniaxial strain
# and then follow that stress as the mesh is rotated 90 degrees.
#
# The mesh is composed of one block with a single element. The nodal
# displacements in the three directions are prescribed. Poisson's
# ratio is 1/3, and Young's modulus is 1e6.
#
# This test is mentioned in
# K. Kamojjala, R. Brannon, A. Sadeghirad, and J. Guilkey, "Verification
# tests in solid mechanics," Engineering with Computers, Vol. 31, 2015.
# DOI: 10.1007/s00366-013-0342-x
#
[Mesh]
type = FileMesh
file = rotation_test.e
[]
[GlobalParams]
displacements = 'disp_x disp_y disp_z'
[]
[Functions]
[./x_200]
type = ParsedFunction
vars = 'delta t0'
vals = '1e-6 1.0'
value = 'if(t<=1.0, delta*t, (1.0+delta)*cos(pi/2*(t-t0)) - 1.0)'
[../]
[./y_200]
type = ParsedFunction
vars = 'delta t0'
vals = '1e-6 1.0'
value = 'if(t<=1.0, 0.0, (1.0+delta)*sin(pi/2*(t-t0)))'
[../]
[./x_300]
type = ParsedFunction
vars = 'delta t0'
vals = '1e-6 1.0'
value = 'if(t<=1.0, delta*t, (1.0+delta)*cos(pi/2.0*(t-t0)) - sin(pi/2.0*(t-t0)) - 1.0)'
[../]
[./y_300]
type = ParsedFunction
vars = 'delta t0'
vals = '1e-6 1.0'
value = 'if(t<=1.0, 0.0, cos(pi/2.0*(t-t0)) + (1+delta)*sin(pi/2.0*(t-t0)) - 1.0)'
[../]
[./x_400]
type = ParsedFunction
vars = 'delta t0'
vals = '1e-6 1.0'
value = 'if(t<=1.0, 0.0, -sin(pi/2.0*(t-t0)))'
[../]
[./y_400]
type = ParsedFunction
vars = 'delta t0'
vals = '1e-6 1.0'
value = 'if(t<=1.0, 0.0, cos(pi/2.0*(t-t0)) - 1.0)'
[../]
[]
[Modules]
[./TensorMechanics]
[./Master]
[./all]
strain = FINITE
add_variables = true
generate_output = 'stress_xx stress_yy stress_zz stress_xy stress_yz stress_zx'
[../]
[../]
[../]
[]
[BCs]
[./no_x]
type = PresetBC
variable = disp_x
boundary = 100
value = 0.0
[../]
[./no_y]
type = PresetBC
variable = disp_y
boundary = 100
value = 0.0
[../]
[./x_200]
type = FunctionPresetBC
variable = disp_x
boundary = 200
function = x_200
[../]
[./y_200]
type = FunctionPresetBC
variable = disp_y
boundary = 200
function = y_200
[../]
[./x_300]
type = FunctionPresetBC
variable = disp_x
boundary = 300
function = x_300
[../]
[./y_300]
type = FunctionPresetBC
variable = disp_y
boundary = 300
function = y_300
[../]
[./x_400]
type = FunctionPresetBC
variable = disp_x
boundary = 400
function = x_400
[../]
[./y_400]
type = FunctionPresetBC
variable = disp_y
boundary = 400
function = y_400
[../]
[./no_z]
type = PresetBC
variable = disp_z
boundary = '100 200 300 400'
value = 0.0
[../]
[]
[Materials]
[./stress]
type = ComputeFiniteStrainElasticStress
[../]
[./elasticity_tensor]
type = ComputeElasticityTensor
fill_method = symmetric9
C_ijkl = '1.5e6 0.75e6 0.75e6 1.5e6 0.75e6 1.5e6 0.375e6 0.375e6 0.375e6'
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
solve_type = NEWTON
petsc_options_iname = '-pc_type '
petsc_options_value = lu
nl_rel_tol = 1e-30
nl_abs_tol = 1e-20
l_max_its = 20
start_time = 0.0
dt = 0.01
end_time = 2.0
[]
[Outputs]
exodus = true
[]
test/tests/controls/time_periods/constraints/constraints.i
[Mesh]
type = FileMesh
file = constraints.e
# NearestNodeLocator, which is needed by TiedValueConstraint,
# only works with ReplicatedMesh currently
parallel_type = replicated
[../]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = CoefDiffusion
variable = u
coef = 0.1
[../]
[./time]
type = TimeDerivative
variable = u
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = 1
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = 4
value = 1
[../]
[]
[Constraints]
[./complete]
type = TiedValueConstraint
variable = u
slave = 2
master = 3
master_variable = u
[../]
[./lower]
type = TiedValueConstraint
variable = u
slave = inside_right_lower
master = inside_left_lower
master_variable = u
[../]
[]
[Executioner]
type = Transient
num_steps = 40
dt = 0.1
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
[Controls]
[./constraints]
type = TimePeriod
disable_objects = 'Constraints/lower Constraint::complete'
start_time = '0.0 2.0'
end_time = '2.0 4.0'
execute_on = 'initial timestep_begin'
[../]
[]
modules/tensor_mechanics/test/tests/mohr_coulomb/uni_axial2.i
[Mesh]
type = FileMesh
file = quarter_hole.e
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[./disp_z]
[../]
[]
[Kernels]
[./TensorMechanics]
displacements = 'disp_x disp_y disp_z'
[../]
[]
[BCs]
[./zmin_zzero]
type = PresetBC
variable = disp_z
boundary = 'zmin'
value = '0'
[../]
[./xmin_xzero]
type = PresetBC
variable = disp_x
boundary = 'xmin'
value = '0'
[../]
[./ymin_yzero]
type = PresetBC
variable = disp_y
boundary = 'ymin'
value = '0'
[../]
[./ymax_disp]
type = FunctionPresetBC
variable = disp_y
boundary = 'ymax'
function = '-1E-4*t'
[../]
[]
[AuxVariables]
[./stress_xx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xz]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yz]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zz]
order = CONSTANT
family = MONOMIAL
[../]
[./mc_int]
order = CONSTANT
family = MONOMIAL
[../]
[./yield_fcn]
order = CONSTANT
family = MONOMIAL
[../]
[]
[AuxKernels]
[./stress_xx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xx
index_i = 0
index_j = 0
[../]
[./stress_xy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xy
index_i = 0
index_j = 1
[../]
[./stress_xz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xz
index_i = 0
index_j = 2
[../]
[./stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
[../]
[./stress_yz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yz
index_i = 1
index_j = 2
[../]
[./stress_zz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zz
index_i = 2
index_j = 2
[../]
[./mc_int_auxk]
type = MaterialStdVectorAux
index = 0
property = plastic_internal_parameter
variable = mc_int
[../]
[./yield_fcn_auxk]
type = MaterialStdVectorAux
index = 0
property = plastic_yield_function
variable = yield_fcn
[../]
[]
[Postprocessors]
[./s_xx]
type = PointValue
point = '0.005 0.02 0.002'
variable = stress_xx
[../]
[./s_xy]
type = PointValue
point = '0.005 0.02 0.002'
variable = stress_xy
[../]
[./s_xz]
type = PointValue
point = '0.005 0.02 0.002'
variable = stress_xz
[../]
[./s_yy]
type = PointValue
point = '0.005 0.02 0.002'
variable = stress_yy
[../]
[./s_yz]
type = PointValue
point = '0.005 0.02 0.002'
variable = stress_yz
[../]
[./s_zz]
type = PointValue
point = '0.005 0.02 0.002'
variable = stress_zz
[../]
[./f]
type = PointValue
point = '0.005 0.02 0.002'
variable = yield_fcn
[../]
[]
[UserObjects]
[./mc_coh]
type = TensorMechanicsHardeningConstant
value = 10E6
[../]
[./mc_phi]
type = TensorMechanicsHardeningConstant
value = 2
convert_to_radians = true
[../]
[./mc_psi]
type = TensorMechanicsHardeningConstant
value = 2
convert_to_radians = true
[../]
[./mc]
type = TensorMechanicsPlasticMohrCoulomb
cohesion = mc_coh
friction_angle = mc_phi
dilation_angle = mc_psi
mc_tip_smoother = 0.01E6
mc_edge_smoother = 29
yield_function_tolerance = 1E-5
internal_constraint_tolerance = 1E-11
[../]
[]
[Materials]
[./elasticity_tensor]
type = ComputeElasticityTensor
block = 1
fill_method = symmetric_isotropic
C_ijkl = '0 5E9' # young = 10Gpa, poisson = 0.0
[../]
[./strain]
type = ComputeIncrementalSmallStrain
block = 1
displacements = 'disp_x disp_y disp_z'
[../]
[./mc]
type = ComputeMultiPlasticityStress
block = 1
ep_plastic_tolerance = 1E-11
plastic_models = mc
max_NR_iterations = 1000
debug_fspb = crash
[../]
[]
# Preconditioning and Executioner options kindly provided by Andrea
[Preconditioning]
[./andy]
type = SMP
full = true
[../]
[]
[Executioner]
end_time = 0.5
dt = 0.1
solve_type = NEWTON
type = Transient
l_tol = 1E-2
nl_abs_tol = 1E-5
nl_rel_tol = 1E-7
l_max_its = 200
nl_max_its = 400
petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
petsc_options_value = ' asm 2 lu gmres 200'
[]
[Outputs]
file_base = uni_axial2
exodus = true
[./csv]
type = CSV
[../]
[]
python/chigger/tests/simple/mug_blocks.i
[Mesh]
type = FileMesh
file = mug.e
[]
[MeshModifiers]
[./subdomains]
type = SubdomainBoundingBox
top_right = '3 3 3'
bottom_left = '0 -3 -2.1'
block_id = '76'
[../]
[]
[Variables]
[./convected]
order = FIRST
family = LAGRANGE
[../]
[./diffused]
order = FIRST
family = LAGRANGE
[../]
[]
[AuxVariables]
[./aux_elem]
order = CONSTANT
family = MONOMIAL
[../]
[]
[Kernels]
[./diff_convected]
type = Diffusion
variable = convected
[../]
[./conv]
# Couple a variable into the convection kernel using local_name = simulationg_name syntax
type = Convection
variable = convected
velocity = '1 1 1'
[../]
[./diff_diffused]
type = Diffusion
variable = diffused
[../]
[./diff_t]
type = TimeDerivative
variable = diffused
[../]
[./conv_t]
type = TimeDerivative
variable = convected
block = '76'
[../]
[]
[BCs]
[./bottom_convected]
type = DirichletBC
variable = convected
boundary = bottom
value = 1
[../]
[./top_convected]
type = DirichletBC
variable = convected
boundary = top
value = 0
[../]
[./bottom_diffused]
type = DirichletBC
variable = diffused
boundary = bottom
value = 2
[../]
[./top_diffused]
type = DirichletBC
variable = diffused
boundary = top
value = 0
[../]
[]
[Postprocessors]
[./func_pp]
type = FunctionValuePostprocessor
function = 2*t
[../]
[]
[Executioner]
# Preconditioned JFNK (default)
type = Transient
num_steps = 20
solve_type = PJFNK
dt = 0.1
[]
[Outputs]
exodus = true
[]
[ICs]
[./aux_ic]
variable = aux_elem
max = 10
seed = 2
type = RandomIC
[../]
[]
modules/functional_expansion_tools/examples/3D_volumetric_cylindrical/main.i
# Basic example coupling a master and sub app in a 3D cylindrical mesh from an input file
#
# The master app provides field values to the sub app via Functional Expansions, which then performs
# its calculations. The sub app's solution field values are then transferred back to the master app
# and coupled into the solution of the master app solution.
#
# This example couples Functional Expansions via AuxVariable, the recommended approach.
#
# Note: this problem is not light, and may take a few minutes to solve.
[Mesh]
type = FileMesh
file = cyl-tet.e
[]
[Variables]
[./m]
order = FIRST
family = LAGRANGE
[../]
[]
[AuxVariables]
[./s_in]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./diff_m]
type = HeatConduction
variable = m
[../]
[./time_diff_m]
type = HeatConductionTimeDerivative
variable = m
[../]
[./s_in] # Add in the contribution from the SubApp
type = CoupledForce
variable = m
v = s_in
[../]
[]
[AuxKernels]
[./reconstruct_s_in]
type = FunctionSeriesToAux
variable = s_in
function = FX_Basis_Value_Main
[../]
[]
[Materials]
[./Unobtanium]
type = GenericConstantMaterial
prop_names = 'thermal_conductivity specific_heat density'
prop_values = '1.0 1.0 1.0' # W/(cm K), J/(g K), g/cm^3
[../]
[]
[ICs]
[./start_m]
type = ConstantIC
variable = m
value = 1
[../]
[]
[BCs]
[./surround]
type = DirichletBC
variable = m
value = 1
boundary = 'top bottom outside'
[../]
[]
[Functions]
[./FX_Basis_Value_Main]
type = FunctionSeries
series_type = CylindricalDuo
orders = '5 3' # Axial first, then (r, t) FX
physical_bounds = '-2.5 2.5 0 0 1' # z_min z_max x_center y_center radius
z = Legendre # Axial in z
disc = Zernike # (r, t) default to unit disc in x-y plane
[../]
[]
[UserObjects]
[./FX_Value_UserObject_Main]
type = FXVolumeUserObject
function = FX_Basis_Value_Main
variable = m
[../]
[]
[Postprocessors]
[./average_value]
type = ElementAverageValue
variable = m
[../]
[./peak_value]
type = ElementExtremeValue
value_type = max
variable = m
[../]
[./picard_iterations]
type = NumPicardIterations
[../]
[]
[Executioner]
type = Transient
num_steps = 10
dt = 0.5
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
picard_max_its = 30
nl_rel_tol = 1e-8
nl_abs_tol = 1e-9
picard_rel_tol = 1e-8
picard_abs_tol = 1e-9
[]
[Outputs]
exodus = true
[]
[MultiApps]
[./FXTransferApp]
type = TransientMultiApp
input_files = sub.i
[../]
[]
[Transfers]
[./ValueToSub]
type = MultiAppFXTransfer
direction = to_multiapp
multi_app = FXTransferApp
this_app_object_name = FX_Value_UserObject_Main
multi_app_object_name = FX_Basis_Value_Sub
[../]
[./ValueToMe]
type = MultiAppFXTransfer
direction = from_multiapp
multi_app = FXTransferApp
this_app_object_name = FX_Basis_Value_Main
multi_app_object_name = FX_Value_UserObject_Sub
[../]
[]
modules/richards/test/tests/dirac/bh07.i
[Mesh]
type = FileMesh
file = bh07_input.e
[]
[GlobalParams]
richardsVarNames_UO = PPNames
[]
[Functions]
[./dts]
type = PiecewiseLinear
y = '1000 10000'
x = '100 1000'
[../]
[]
[UserObjects]
[./PPNames]
type = RichardsVarNames
richards_vars = pressure
[../]
[./DensityConstBulk]
type = RichardsDensityConstBulk
dens0 = 1000
bulk_mod = 2E9
[../]
[./Seff1VG]
type = RichardsSeff1VG
m = 0.8
al = 1E-5
[../]
[./RelPermPower]
type = RichardsRelPermPower
simm = 0.0
n = 2
[../]
[./Saturation]
type = RichardsSat
s_res = 0
sum_s_res = 0
[../]
[./SUPGstandard]
type = RichardsSUPGstandard
p_SUPG = 1E8
[../]
[./borehole_total_outflow_mass]
type = RichardsSumQuantity
[../]
[]
[Variables]
active = 'pressure'
[./pressure]
order = FIRST
family = LAGRANGE
[../]
[]
[ICs]
[./p_ic]
type = FunctionIC
variable = pressure
function = initial_pressure
[../]
[]
[BCs]
[./fix_outer]
type = DirichletBC
boundary = perimeter
variable = pressure
value = 1E7
[../]
[]
[AuxVariables]
[./Seff1VG_Aux]
[../]
[]
[Kernels]
active = 'richardsf richardst'
[./richardst]
type = RichardsMassChange
variable = pressure
[../]
[./richardsf]
type = RichardsFlux
variable = pressure
[../]
[]
[DiracKernels]
[./bh]
type = RichardsBorehole
bottom_pressure = 0
point_file = bh07.bh
SumQuantityUO = borehole_total_outflow_mass
variable = pressure
unit_weight = '0 0 0'
re_constant = 0.1594
character = 2
[../]
[]
[Postprocessors]
[./bh_report]
type = RichardsPlotQuantity
uo = borehole_total_outflow_mass
execute_on = 'initial timestep_end'
[../]
[./fluid_mass]
type = RichardsMass
variable = pressure
execute_on = 'initial timestep_end'
[../]
[]
[Functions]
[./initial_pressure]
type = ParsedFunction
value = 1E7
[../]
[]
[Materials]
[./all]
type = RichardsMaterial
block = 1
viscosity = 1E-3
mat_porosity = 0.1
mat_permeability = '1E-11 0 0 0 1E-11 0 0 0 1E-11'
density_UO = DensityConstBulk
relperm_UO = RelPermPower
sat_UO = Saturation
seff_UO = Seff1VG
SUPG_UO = SUPGstandard
gravity = '0 0 0'
linear_shape_fcns = true
[../]
[]
[AuxKernels]
[./Seff1VG_AuxK]
type = RichardsSeffAux
variable = Seff1VG_Aux
seff_UO = Seff1VG
pressure_vars = pressure
[../]
[]
[Preconditioning]
[./usual]
type = SMP
full = true
petsc_options = '-snes_converged_reason'
petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
[../]
[]
[Executioner]
type = Transient
end_time = 1000
solve_type = NEWTON
[./TimeStepper]
# get only marginally better results for smaller time steps
type = FunctionDT
function = dts
[../]
[]
[Outputs]
file_base = bh07
execute_on = 'initial timestep_end final'
interval = 10000
exodus = true
[]
modules/tensor_mechanics/test/tests/beam/static/euler_finite_rot_y_action.i
# Large strain/large rotation cantilever beam tese
# A 300 N point load is applied at the end of a 4 m long cantilever beam.
# Young's modulus (E) = 1e4
# Shear modulus (G) = 1e8
# shear coefficient (k) = 1.0
# Area (A) = 1.0
# Iy = Iz = 0.16
# The non-dimensionless parameter alpha = kAGL^2/EI = 1e6
# Since the value of alpha is quite high, the beam behaves like
# a thin beam where shear effects are not significant.
# Beam deflection:
# small strain+rot = 3.998 m (exact 4.0)
# large strain + small rotation = -0.05 m in x and 3.74 m in y
# large rotations + small strain = -0.92 m in x and 2.38 m in y
# large rotations + large strain = -0.954 m in x and 2.37 m in y (exact -1.0 m in x and 2.4 m in y)
# References:
# K. E. Bisshopp and D.C. Drucker, Quaterly of Applied Mathematics, Vol 3, No. 3, 1945.
[Mesh]
type = FileMesh
file = beam_finite_rot_test_2.e
displacements = 'disp_x disp_y disp_z'
[]
[BCs]
[./fixx1]
type = DirichletBC
variable = disp_x
boundary = 1
value = 0.0
[../]
[./fixy1]
type = DirichletBC
variable = disp_y
boundary = 1
value = 0.0
[../]
[./fixz1]
type = DirichletBC
variable = disp_z
boundary = 1
value = 0.0
[../]
[./fixr1]
type = DirichletBC
variable = rot_x
boundary = 1
value = 0.0
[../]
[./fixr2]
type = DirichletBC
variable = rot_y
boundary = 1
value = 0.0
[../]
[./fixr3]
type = DirichletBC
variable = rot_z
boundary = 1
value = 0.0
[../]
[]
[NodalKernels]
[./force_y2]
type = UserForcingFunctionNodalKernel
variable = disp_y
boundary = 2
function = force
[../]
[]
[Functions]
[./force]
type = PiecewiseLinear
x = '0.0 2.0 8.0'
y = '0.0 300.0 300.0'
[../]
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
solve_type = PJFNK
line_search = 'none'
petsc_options = '-snes_ksp_ew'
petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
petsc_options_value = '201 hypre boomeramg 4'
nl_max_its = 50
nl_rel_tol = 1e-9
nl_abs_tol = 1e-7
l_max_its = 50
dt = 0.05
end_time = 2.1
[]
[Modules/TensorMechanics/LineElementMaster]
[./all]
add_variables = true
displacements = 'disp_x disp_y disp_z'
rotations = 'rot_x rot_y rot_z'
strain_type = FINITE
rotation_type = FINITE
# Geometry parameters
area = 1.0
Iy = 0.16
Iz = 0.16
y_orientation = '0.0 1.0 0.0'
[../]
[]
[Materials]
[./elasticity]
type = ComputeElasticityBeam
youngs_modulus = 1e4
poissons_ratio = -0.99995
shear_coefficient = 1.0
block = 1
[../]
[./stress]
type = ComputeBeamResultants
block = 1
[../]
[]
[Postprocessors]
[./disp_x]
type = PointValue
point = '4.0 0.0 0.0'
variable = disp_x
[../]
[./disp_y]
type = PointValue
point = '4.0 0.0 0.0'
variable = disp_y
[../]
[./rot_z]
type = PointValue
point = '4.0 0.0 0.0'
variable = rot_z
[../]
[]
[Outputs]
file_base = 'euler_finite_rot_y_out'
exodus = true
perf_graph = true
[]
modules/solid_mechanics/examples/bridge/bridge.i
#
# Bridge linear elasticity example
#
# This example models a bridge using linear elasticity.
# It can be either steel or concrete.
# Gravity is applied
# A pressure of 0.5 MPa is also applied
#
[GlobalParams]
disp_x = disp_x
disp_y = disp_y
disp_z = disp_z
[]
[Mesh]
displacements = 'disp_x disp_y disp_z' #Define displacements for deformed mesh
type = FileMesh #Read in mesh from file
file = ../../../tensor_mechanics/examples/bridge/bridge.e
boundary_id = '1 2 3 4 5 6' #Assign names to boundaries to make things clearer
boundary_name = 'top left right bottom1 bottom2 bottom3'
[]
[Variables]
[./disp_x]
order = FIRST
family = LAGRANGE
[../]
[./disp_y]
order = FIRST
family = LAGRANGE
[../]
[./disp_z]
order = FIRST
family = LAGRANGE
[../]
[]
[SolidMechanics]
[./solid]
[../]
[]
[Kernels]
[./gravity_y]
#Gravity is applied to bridge
type = Gravity
variable = disp_y
value = -9.81
[../]
[]
[AuxVariables]
[./von_mises]
#Dependent variable used to visualize the Von Mises stress
order = CONSTANT
family = MONOMIAL
[../]
[]
[AuxKernels]
[./von_mises_kernel]
#Calculates the von mises stress and assigns it to von_mises
type = MaterialTensorAux
variable = von_mises
tensor = stress
execute_on = timestep_end
quantity = VonMises
[../]
[]
[BCs]
[./Pressure]
[./load]
#Applies the pressure
boundary = top
factor = 5e5 # Pa
[../]
[../]
[./anchor_x]
#Anchors the bottom and sides against deformation in the x-direction
type = PresetBC
variable = disp_x
boundary = 'left right bottom1 bottom2 bottom3'
value = 0.0
[../]
[./anchor_y]
#Anchors the bottom and sides against deformation in the y-direction
type = PresetBC
variable = disp_y
boundary = 'left right bottom1 bottom2 bottom3'
value = 0.0
[../]
[./anchor_z]
#Anchors the bottom and sides against deformation in the z-direction
type = PresetBC
variable = disp_z
boundary = 'left right bottom1 bottom2 bottom3'
value = 0.0
[../]
[]
[Materials]
[./steel_elastic]
type = Elastic
block = 1
youngs_modulus = 210e9 #Pa
poissons_ratio = 0.3
formulation = Linear
[../]
[./density_steel]
#Defines the density of steel
type = GenericConstantMaterial
block = 1
prop_names = density
prop_values = 7850 # kg/m^3
[../]
[]
[Preconditioning]
[./SMP]
#Creates the entire Jacobian, for the Newton solve
type = SMP
full = true
[../]
[]
[Executioner]
#We solve a steady state problem using Newton's iteration
type = Steady
solve_type = NEWTON
nl_rel_tol = 1e-9
l_max_its = 30
l_tol = 1e-4
nl_max_its = 10
petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
petsc_options_value = 'hypre boomeramg 31'
[]
[Outputs]
[./exodus]
#Outputs the result to an exodus file and converts the element stress output to a nodal output
type = Exodus
elemental_as_nodal = true
[../]
[]
test/tests/mesh_modifiers/mesh_extruder/extrude_remap_layer2.i
[Mesh]
type = FileMesh
file = multiblock.e
[]
[MeshModifiers]
[./extrude]
type = MeshExtruder
num_layers = 6
extrusion_vector = '0 0 2'
bottom_sideset = 'new_bottom'
top_sideset = 'new_top'
# Remap layers
existing_subdomains = '1 2 5'
layers = '1 3 5'
new_ids = '10 12 15' # Repeat this remapping for each layer
[../]
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./bottom]
type = DirichletBC
variable = u
boundary = 'new_bottom'
value = 0
[../]
[./top]
type = DirichletBC
variable = u
boundary = 'new_top'
value = 1
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
[]
[Outputs]
exodus = true
[]
modules/porous_flow/examples/coal_mining/coarse_with_fluid.i
# Strata deformation and fluid flow aaround a coal mine - 3D model
#
# A "half model" is used. The mine is 400m deep and
# just the roof is studied (-400<=z<=0). The mining panel
# sits between 0<=x<=150, and 0<=y<=1000, so this simulates
# a coal panel that is 300m wide and 1000m long. The outer boundaries
# are 1km from the excavation boundaries.
#
# The excavation takes 0.5 years.
#
# The boundary conditions for this simulation are:
# - disp_x = 0 at x=0 and x=1150
# - disp_y = 0 at y=-1000 and y=1000
# - disp_z = 0 at z=-400, but there is a time-dependent
# Young modulus that simulates excavation
# - wc_x = 0 at y=-1000 and y=1000
# - wc_y = 0 at x=0 and x=1150
# - no flow at x=0, z=-400 and z=0
# - fixed porepressure at y=-1000, y=1000 and x=1150
# That is, rollers on the sides, free at top,
# and prescribed at bottom in the unexcavated portion.
#
# A single-phase unsaturated fluid is used.
#
# The small strain formulation is used.
#
# All stresses are measured in MPa, and time units are measured in years.
#
# The initial porepressure is hydrostatic with P=0 at z=0, so
# Porepressure ~ - 0.01*z MPa, where the fluid has density 1E3 kg/m^3 and
# gravity = = 10 m.s^-2 = 1E-5 MPa m^2/kg.
# To be more accurate, i use
# Porepressure = -bulk * log(1 + g*rho0*z/bulk)
# where bulk=2E3 MPa and rho0=1Ee kg/m^3.
# The initial stress is consistent with the weight force from undrained
# density 2500 kg/m^3, and fluid porepressure, and a Biot coefficient of 0.7, ie,
# stress_zz^effective = 0.025*z + 0.7 * initial_porepressure
# The maximum and minimum principal horizontal effective stresses are
# assumed to be equal to 0.8*stress_zz.
#
# Material properties:
# Young's modulus = 8 GPa
# Poisson's ratio = 0.25
# Cosserat layer thickness = 1 m
# Cosserat-joint normal stiffness = large
# Cosserat-joint shear stiffness = 1 GPa
# MC cohesion = 2 MPa
# MC friction angle = 35 deg
# MC dilation angle = 8 deg
# MC tensile strength = 1 MPa
# MC compressive strength = 100 MPa
# WeakPlane cohesion = 0.1 MPa
# WeakPlane friction angle = 30 deg
# WeakPlane dilation angle = 10 deg
# WeakPlane tensile strength = 0.1 MPa
# WeakPlane compressive strength = 100 MPa softening to 1 MPa at strain = 1
# Fluid density at zero porepressure = 1E3 kg/m^3
# Fluid bulk modulus = 2E3 MPa
# Fluid viscosity = 1.1E-3 Pa.s = 1.1E-9 MPa.s = 3.5E-17 MPa.year
#
[Mesh]
type = FileMesh
file = mesh/coarse.e
[]
[GlobalParams]
perform_finite_strain_rotations = false
displacements = 'disp_x disp_y disp_z'
Cosserat_rotations = 'wc_x wc_y wc_z'
PorousFlowDictator = dictator
biot_coefficient = 0.7
[]
[MeshModifiers]
[./xmin]
type = SideSetsAroundSubdomain
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
new_boundary = xmin
normal = '-1 0 0'
[../]
[./xmax]
type = SideSetsAroundSubdomain
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
new_boundary = xmax
normal = '1 0 0'
[../]
[./ymin]
type = SideSetsAroundSubdomain
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
new_boundary = ymin
normal = '0 -1 0'
[../]
[./ymax]
type = SideSetsAroundSubdomain
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
new_boundary = ymax
normal = '0 1 0'
[../]
[./zmax]
type = SideSetsAroundSubdomain
block = 16
new_boundary = zmax
normal = '0 0 1'
[../]
[./zmin]
type = SideSetsAroundSubdomain
block = 2
new_boundary = zmin
normal = '0 0 -1'
[../]
[./excav]
type = SubdomainBoundingBox
depends_on = 'xmin xmax ymin ymax zmin zmax'
block_id = 1
bottom_left = '0 0 -400'
top_right = '150 1000 -397'
[../]
[./roof]
type = SideSetsBetweenSubdomains
master_block = 3
paired_block = 1
depends_on = excav
new_boundary = roof
[../]
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[./disp_z]
[../]
[./wc_x]
[../]
[./wc_y]
[../]
[./porepressure]
scaling = 1E-5
[../]
[]
[ICs]
[./porepressure]
type = FunctionIC
variable = porepressure
function = ini_pp
[../]
[]
[Kernels]
[./cx_elastic]
type = CosseratStressDivergenceTensors
use_displaced_mesh = false
variable = disp_x
component = 0
[../]
[./cy_elastic]
type = CosseratStressDivergenceTensors
use_displaced_mesh = false
variable = disp_y
component = 1
[../]
[./cz_elastic]
type = CosseratStressDivergenceTensors
use_displaced_mesh = false
variable = disp_z
component = 2
[../]
[./x_couple]
type = StressDivergenceTensors
use_displaced_mesh = false
variable = wc_x
displacements = 'wc_x wc_y wc_z'
component = 0
base_name = couple
[../]
[./y_couple]
type = StressDivergenceTensors
use_displaced_mesh = false
variable = wc_y
displacements = 'wc_x wc_y wc_z'
component = 1
base_name = couple
[../]
[./x_moment]
type = MomentBalancing
use_displaced_mesh = false
variable = wc_x
component = 0
[../]
[./y_moment]
type = MomentBalancing
use_displaced_mesh = false
variable = wc_y
component = 1
[../]
[./gravity]
type = Gravity
use_displaced_mesh = false
variable = disp_z
value = -10E-6 # remember this is in MPa
[../]
[./poro_x]
type = PorousFlowEffectiveStressCoupling
use_displaced_mesh = false
variable = disp_x
component = 0
[../]
[./poro_y]
type = PorousFlowEffectiveStressCoupling
use_displaced_mesh = false
variable = disp_y
component = 1
[../]
[./poro_z]
type = PorousFlowEffectiveStressCoupling
use_displaced_mesh = false
component = 2
variable = disp_z
[../]
[./mass0]
type = PorousFlowMassTimeDerivative
use_displaced_mesh = false
fluid_component = 0
variable = porepressure
[../]
[./flux]
type = PorousFlowAdvectiveFlux
use_displaced_mesh = false
variable = porepressure
gravity = '0 0 -10E-6'
fluid_component = 0
[../]
[./poro_vol_exp]
type = PorousFlowMassVolumetricExpansion
use_displaced_mesh = false
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
variable = porepressure
fluid_component = 0
[../]
[]
[AuxVariables]
[./saturation]
order = CONSTANT
family = MONOMIAL
[../]
[./darcy_x]
order = CONSTANT
family = MONOMIAL
[../]
[./darcy_y]
order = CONSTANT
family = MONOMIAL
[../]
[./darcy_z]
order = CONSTANT
family = MONOMIAL
[../]
[./porosity]
order = CONSTANT
family = MONOMIAL
[../]
[./wc_z]
[../]
[./stress_xx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xz]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yz]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zz]
order = CONSTANT
family = MONOMIAL
[../]
[./total_strain_xx]
order = CONSTANT
family = MONOMIAL
[../]
[./total_strain_xy]
order = CONSTANT
family = MONOMIAL
[../]
[./total_strain_xz]
order = CONSTANT
family = MONOMIAL
[../]
[./total_strain_yx]
order = CONSTANT
family = MONOMIAL
[../]
[./total_strain_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./total_strain_yz]
order = CONSTANT
family = MONOMIAL
[../]
[./total_strain_zx]
order = CONSTANT
family = MONOMIAL
[../]
[./total_strain_zy]
order = CONSTANT
family = MONOMIAL
[../]
[./total_strain_zz]
order = CONSTANT
family = MONOMIAL
[../]
[./perm_xx]
order = CONSTANT
family = MONOMIAL
[../]
[./perm_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./perm_zz]
order = CONSTANT
family = MONOMIAL
[../]
[./mc_shear]
order = CONSTANT
family = MONOMIAL
[../]
[./mc_tensile]
order = CONSTANT
family = MONOMIAL
[../]
[./wp_shear]
order = CONSTANT
family = MONOMIAL
[../]
[./wp_tensile]
order = CONSTANT
family = MONOMIAL
[../]
[./wp_shear_f]
order = CONSTANT
family = MONOMIAL
[../]
[./wp_tensile_f]
order = CONSTANT
family = MONOMIAL
[../]
[./mc_shear_f]
order = CONSTANT
family = MONOMIAL
[../]
[./mc_tensile_f]
order = CONSTANT
family = MONOMIAL
[../]
[]
[AuxKernels]
[./saturation_water]
type = PorousFlowPropertyAux
variable = saturation
property = saturation
phase = 0
execute_on = timestep_end
[../]
[./darcy_x]
type = PorousFlowDarcyVelocityComponent
variable = darcy_x
gravity = '0 0 -10E-6'
component = x
[../]
[./darcy_y]
type = PorousFlowDarcyVelocityComponent
variable = darcy_y
gravity = '0 0 -10E-6'
component = y
[../]
[./darcy_z]
type = PorousFlowDarcyVelocityComponent
variable = darcy_z
gravity = '0 0 -10E-6'
component = z
[../]
[./porosity]
type = PorousFlowPropertyAux
property = porosity
variable = porosity
execute_on = timestep_end
[../]
[./stress_xx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xx
index_i = 0
index_j = 0
execute_on = timestep_end
[../]
[./stress_xy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xy
index_i = 0
index_j = 1
execute_on = timestep_end
[../]
[./stress_xz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xz
index_i = 0
index_j = 2
execute_on = timestep_end
[../]
[./stress_yx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yx
index_i = 1
index_j = 0
execute_on = timestep_end
[../]
[./stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
execute_on = timestep_end
[../]
[./stress_yz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yz
index_i = 1
index_j = 2
execute_on = timestep_end
[../]
[./stress_zx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zx
index_i = 2
index_j = 0
execute_on = timestep_end
[../]
[./stress_zy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zy
index_i = 2
index_j = 1
execute_on = timestep_end
[../]
[./stress_zz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zz
index_i = 2
index_j = 2
execute_on = timestep_end
[../]
[./total_strain_xx]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_xx
index_i = 0
index_j = 0
execute_on = timestep_end
[../]
[./total_strain_xy]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_xy
index_i = 0
index_j = 1
execute_on = timestep_end
[../]
[./total_strain_xz]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_xz
index_i = 0
index_j = 2
execute_on = timestep_end
[../]
[./total_strain_yx]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_yx
index_i = 1
index_j = 0
execute_on = timestep_end
[../]
[./total_strain_yy]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_yy
index_i = 1
index_j = 1
execute_on = timestep_end
[../]
[./total_strain_yz]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_yz
index_i = 1
index_j = 2
execute_on = timestep_end
[../]
[./total_strain_zx]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_zx
index_i = 2
index_j = 0
execute_on = timestep_end
[../]
[./total_strain_zy]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_zy
index_i = 2
index_j = 1
execute_on = timestep_end
[../]
[./total_strain_zz]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_zz
index_i = 2
index_j = 2
execute_on = timestep_end
[../]
[./perm_xx]
type = PorousFlowPropertyAux
property = permeability
variable = perm_xx
row = 0
column = 0
execute_on = timestep_end
[../]
[./perm_yy]
type = PorousFlowPropertyAux
property = permeability
variable = perm_yy
row = 1
column = 1
execute_on = timestep_end
[../]
[./perm_zz]
type = PorousFlowPropertyAux
property = permeability
variable = perm_zz
row = 2
column = 2
execute_on = timestep_end
[../]
[./mc_shear]
type = MaterialStdVectorAux
index = 0
property = mc_plastic_internal_parameter
variable = mc_shear
execute_on = timestep_end
[../]
[./mc_tensile]
type = MaterialStdVectorAux
index = 1
property = mc_plastic_internal_parameter
variable = mc_tensile
execute_on = timestep_end
[../]
[./wp_shear]
type = MaterialStdVectorAux
index = 0
property = wp_plastic_internal_parameter
variable = wp_shear
execute_on = timestep_end
[../]
[./wp_tensile]
type = MaterialStdVectorAux
index = 1
property = wp_plastic_internal_parameter
variable = wp_tensile
execute_on = timestep_end
[../]
[./mc_shear_f]
type = MaterialStdVectorAux
index = 6
property = mc_plastic_yield_function
variable = mc_shear_f
execute_on = timestep_end
[../]
[./mc_tensile_f]
type = MaterialStdVectorAux
index = 0
property = mc_plastic_yield_function
variable = mc_tensile_f
execute_on = timestep_end
[../]
[./wp_shear_f]
type = MaterialStdVectorAux
index = 0
property = wp_plastic_yield_function
variable = wp_shear_f
execute_on = timestep_end
[../]
[./wp_tensile_f]
type = MaterialStdVectorAux
index = 1
property = wp_plastic_yield_function
variable = wp_tensile_f
execute_on = timestep_end
[../]
[]
[BCs]
[./no_x]
type = PresetBC
variable = disp_x
boundary = 'xmin xmax'
value = 0.0
[../]
[./no_y]
type = PresetBC
variable = disp_y
boundary = 'ymin ymax'
value = 0.0
[../]
[./no_z]
type = PresetBC
variable = disp_z
boundary = zmin
value = 0.0
[../]
[./no_wc_x]
type = PresetBC
variable = wc_x
boundary = 'ymin ymax'
value = 0.0
[../]
[./no_wc_y]
type = PresetBC
variable = wc_y
boundary = 'xmin xmax'
value = 0.0
[../]
[./fix_porepressure]
type = FunctionPresetBC
variable = porepressure
boundary = 'ymin ymax xmax'
function = ini_pp
[../]
[./roof_porepressure]
type = PorousFlowPiecewiseLinearSink
variable = porepressure
pt_vals = '-1E3 1E3'
multipliers = '-1 1'
fluid_phase = 0
flux_function = roof_conductance
boundary = roof
[../]
[./roof_bcs]
type = StickyBC
variable = disp_z
min_value = -3.0
boundary = roof
[../]
[]
[Functions]
[./ini_pp]
type = ParsedFunction
vars = 'bulk p0 g rho0'
vals = '2E3 0.0 1E-5 1E3'
value = '-bulk*log(exp(-p0/bulk)+g*rho0*z/bulk)'
[../]
[./ini_xx]
type = ParsedFunction
vars = 'bulk p0 g rho0 biot'
vals = '2E3 0.0 1E-5 1E3 0.7'
value = '0.8*(2500*10E-6*z+biot*(-bulk*log(exp(-p0/bulk)+g*rho0*z/bulk)))'
[../]
[./ini_zz]
type = ParsedFunction
vars = 'bulk p0 g rho0 biot'
vals = '2E3 0.0 1E-5 1E3 0.7'
value = '2500*10E-6*z+biot*(-bulk*log(exp(-p0/bulk)+g*rho0*z/bulk))'
[../]
[./excav_sideways]
type = ParsedFunction
vars = 'end_t ymin ymax minval maxval slope'
vals = '0.5 0 1000.0 1E-9 1 60'
# excavation face at ymin+(ymax-ymin)*min(t/end_t,1)
# slope is the distance over which the modulus reduces from maxval to minval
value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),minval,if(y<ymin+(ymax-ymin)*min(t/end_t,1)+slope,minval+(maxval-minval)*(y-(ymin+(ymax-ymin)*min(t/end_t,1)))/slope,maxval))'
[../]
[./density_sideways]
type = ParsedFunction
vars = 'end_t ymin ymax minval maxval'
vals = '0.5 0 1000.0 0 2500'
value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),minval,maxval)'
[../]
[./roof_conductance]
type = ParsedFunction
vars = 'end_t ymin ymax maxval minval'
vals = '0.5 0 1000.0 1E7 0'
value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),maxval,minval)'
[../]
[]
[UserObjects]
[./dictator]
type = PorousFlowDictator
porous_flow_vars = 'porepressure disp_x disp_y disp_z'
number_fluid_phases = 1
number_fluid_components = 1
[../]
[./pc]
type = PorousFlowCapillaryPressureVG
m = 0.5
alpha = 1 # MPa^-1
[../]
[./mc_coh_strong_harden]
type = TensorMechanicsHardeningExponential
value_0 = 1.99 # MPa
value_residual = 2.01 # MPa
rate = 1.0
[../]
[./mc_fric]
type = TensorMechanicsHardeningConstant
value = 0.61 # 35deg
[../]
[./mc_dil]
type = TensorMechanicsHardeningConstant
value = 0.15 # 8deg
[../]
[./mc_tensile_str_strong_harden]
type = TensorMechanicsHardeningExponential
value_0 = 1.0 # MPa
value_residual = 1.0 # MPa
rate = 1.0
[../]
[./mc_compressive_str]
type = TensorMechanicsHardeningCubic
value_0 = 100 # Large!
value_residual = 100
internal_limit = 0.1
[../]
[./wp_coh_harden]
type = TensorMechanicsHardeningCubic
value_0 = 0.05
value_residual = 0.05
internal_limit = 10
[../]
[./wp_tan_fric]
type = TensorMechanicsHardeningConstant
value = 0.26 # 15deg
[../]
[./wp_tan_dil]
type = TensorMechanicsHardeningConstant
value = 0.18 # 10deg
[../]
[./wp_tensile_str_harden]
type = TensorMechanicsHardeningCubic
value_0 = 0.05
value_residual = 0.05
internal_limit = 10
[../]
[./wp_compressive_str_soften]
type = TensorMechanicsHardeningCubic
value_0 = 100
value_residual = 1
internal_limit = 1.0
[../]
[]
[Modules]
[./FluidProperties]
[./simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 2E3
density0 = 1000
thermal_expansion = 0
viscosity = 3.5E-17
[../]
[../]
[]
[Materials]
[./temperature]
type = PorousFlowTemperature
[../]
[./eff_fluid_pressure]
type = PorousFlowEffectiveFluidPressure
[../]
[./vol_strain]
type = PorousFlowVolumetricStrain
[../]
[./ppss]
type = PorousFlow1PhaseP
porepressure = porepressure
capillary_pressure = pc
[../]
[./massfrac]
type = PorousFlowMassFraction
[../]
[./simple_fluid]
type = PorousFlowSingleComponentFluid
fp = simple_fluid
phase = 0
[../]
[./porosity_bulk]
type = PorousFlowPorosity
fluid = true
mechanical = true
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
ensure_positive = true
porosity_zero = 0.02
solid_bulk = 5.3333E3
[../]
[./porosity_excav]
type = PorousFlowPorosityConst
block = 1
porosity = 1.0
[../]
[./permeability_bulk]
type = PorousFlowPermeabilityKozenyCarman
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
poroperm_function = kozeny_carman_phi0
k0 = 1E-15
phi0 = 0.02
n = 2
m = 2
[../]
[./permeability_excav]
type = PorousFlowPermeabilityConst
block = 1
permeability = '0 0 0 0 0 0 0 0 0'
[../]
[./relperm]
type = PorousFlowRelativePermeabilityCorey
n = 4
s_res = 0.4
sum_s_res = 0.4
phase = 0
[../]
[./elasticity_tensor_0]
type = ComputeLayeredCosseratElasticityTensor
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
young = 8E3 # MPa
poisson = 0.25
layer_thickness = 1.0
joint_normal_stiffness = 1E9 # huge
joint_shear_stiffness = 1E3 # MPa
[../]
[./elasticity_tensor_1]
type = ComputeLayeredCosseratElasticityTensor
block = 1
young = 8E3 # MPa
poisson = 0.25
layer_thickness = 1.0
joint_normal_stiffness = 1E9 # huge
joint_shear_stiffness = 1E3 # MPa
elasticity_tensor_prefactor = excav_sideways
[../]
[./strain]
type = ComputeCosseratIncrementalSmallStrain
eigenstrain_names = ini_stress
[../]
[./ini_stress]
type = ComputeEigenstrainFromInitialStress
eigenstrain_name = ini_stress
initial_stress = 'ini_xx 0 0 0 ini_xx 0 0 0 ini_zz'
[../]
[./stress_0]
type = ComputeMultipleInelasticCosseratStress
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
inelastic_models = 'mc wp'
cycle_models = true
relative_tolerance = 2.0
absolute_tolerance = 1E6
max_iterations = 1
tangent_operator = nonlinear
perform_finite_strain_rotations = false
[../]
[./stress_1]
type = ComputeMultipleInelasticCosseratStress
block = 1
inelastic_models = ''
relative_tolerance = 2.0
absolute_tolerance = 1E6
max_iterations = 1
tangent_operator = nonlinear
perform_finite_strain_rotations = false
[../]
[./mc]
type = CappedMohrCoulombCosseratStressUpdate
warn_about_precision_loss = false
host_youngs_modulus = 8E3
host_poissons_ratio = 0.25
base_name = mc
tensile_strength = mc_tensile_str_strong_harden
compressive_strength = mc_compressive_str
cohesion = mc_coh_strong_harden
friction_angle = mc_fric
dilation_angle = mc_dil
max_NR_iterations = 100000
smoothing_tol = 0.1 # MPa # Must be linked to cohesion
yield_function_tol = 1E-9 # MPa. this is essentially the lowest possible without lots of precision loss
perfect_guess = true
min_step_size = 1.0
[../]
[./wp]
type = CappedWeakPlaneCosseratStressUpdate
warn_about_precision_loss = false
base_name = wp
cohesion = wp_coh_harden
tan_friction_angle = wp_tan_fric
tan_dilation_angle = wp_tan_dil
tensile_strength = wp_tensile_str_harden
compressive_strength = wp_compressive_str_soften
max_NR_iterations = 10000
tip_smoother = 0.05
smoothing_tol = 0.05 # MPa # Note, this must be tied to cohesion, otherwise get no possible return at cone apex
yield_function_tol = 1E-11 # MPa. this is essentially the lowest possible without lots of precision loss
perfect_guess = true
min_step_size = 1.0E-3
[../]
[./undrained_density_0]
type = GenericConstantMaterial
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
prop_names = density
prop_values = 2500
[../]
[./undrained_density_1]
type = GenericFunctionMaterial
block = 1
prop_names = density
prop_values = density_sideways
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[]
[]
[Postprocessors]
[./min_roof_disp]
type = NodalExtremeValue
boundary = roof
value_type = min
variable = disp_z
[../]
[./min_roof_pp]
type = NodalExtremeValue
boundary = roof
value_type = min
variable = porepressure
[../]
[./min_surface_disp]
type = NodalExtremeValue
boundary = zmax
value_type = min
variable = disp_z
[../]
[./min_surface_pp]
type = NodalExtremeValue
boundary = zmax
value_type = min
variable = porepressure
[../]
[./max_perm_zz]
type = ElementExtremeValue
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
variable = perm_zz
[../]
[]
[Executioner]
type = Transient
solve_type = 'NEWTON'
petsc_options = '-snes_converged_reason'
# best overall
# petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
# petsc_options_value = ' lu mumps'
# best if you do not have mumps:
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu superlu_dist'
# best if you do not have mumps or superlu_dist:
#petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
#petsc_options_value = ' asm 2 lu gmres 200'
# very basic:
#petsc_options_iname = '-pc_type -ksp_type -ksp_gmres_restart'
#petsc_options_value = ' bjacobi gmres 200'
line_search = bt
nl_abs_tol = 1e-3
nl_rel_tol = 1e-5
l_max_its = 200
nl_max_its = 30
start_time = 0.0
dt = 0.014706
end_time = 0.014706 #0.5
[]
[Outputs]
interval = 1
print_linear_residuals = true
exodus = true
csv = true
console = true
[]
modules/tensor_mechanics/test/tests/truss/truss_2d_action.i
#
# Truss in two dimensional space
#
# The truss is made of five equilateral triangles supported at each end.
# The truss starts at (0,0). At (1,0), there is a point load of 25.
# The reactions are therefore
# Ryleft = 2/3 * 25 = 16.7
# Ryright = 1/3 * 25 = 8.33
# The area of each member is 0.8.
# Statics gives the stress in each member. For example, for element 6 (from
# (0,0) to (1/2,sqrt(3)/2)), the force is
# f = 2/3 * 25 * 2/sqrt(3) = 100/3/sqrt(3) (compressive)
# and the stress is
# s = -100/3/sqrt(3)/0.8 = -24.06
#
[Mesh]
type = FileMesh
file = truss_2d.e
displacements = 'disp_x disp_y'
[]
[AuxVariables]
[./axial_stress]
order = CONSTANT
family = MONOMIAL
[../]
[./e_over_l]
order = CONSTANT
family = MONOMIAL
[../]
[./area]
order = CONSTANT
family = MONOMIAL
[../]
[./react_x]
order = FIRST
family = LAGRANGE
[../]
[./react_y]
order = FIRST
family = LAGRANGE
[../]
[./react_z]
order = FIRST
family = LAGRANGE
[../]
[]
[Functions]
[./x2]
type = PiecewiseLinear
x = '0 1 2 3'
y = '0 .5 1 1'
[../]
[./y2]
type = PiecewiseLinear
x = '0 1 2 3'
y = '0 0 .5 1'
[../]
[]
[BCs]
[./fixx1]
type = DirichletBC
variable = disp_x
boundary = 1
value = 0
[../]
[./fixy1]
type = DirichletBC
variable = disp_y
boundary = 1
value = 0
[../]
[./fixy4]
type = DirichletBC
variable = disp_y
boundary = 4
value = 0
[../]
[]
[DiracKernels]
[./pull]
type = ConstantPointSource
value = -25
point = '1 0 0'
variable = disp_y
[../]
[]
[AuxKernels]
[./axial_stress]
type = MaterialRealAux
block = 1
property = axial_stress
variable = axial_stress
[../]
[./e_over_l]
type = MaterialRealAux
block = 1
property = e_over_l
variable = e_over_l
[../]
[./area]
type = ConstantAux
block = 1
variable = area
value = 0.8
execute_on = 'initial timestep_begin'
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
solve_type = PJFNK
petsc_options_iname = '-pc_type -ksp_gmres_restart'
petsc_options_value = 'jacobi 101'
nl_max_its = 15
nl_rel_tol = 1e-8
nl_abs_tol = 1e-10
dt = 1
num_steps = 1
end_time = 1
[]
[Modules/TensorMechanics/LineElementMaster]
[./block]
truss = true
add_variables = true
displacements = 'disp_x disp_y'
# area = area # commented out for error check
block = 1
save_in = 'react_x react_y'
[../]
[]
[Materials]
[./linelast]
type = LinearElasticTruss
block = 1
youngs_modulus = 1e6
displacements = 'disp_x disp_y'
[../]
[]
[Outputs]
file_base = 'truss_2d_out'
exodus = true
[]
modules/richards/test/tests/excav/ex02.i
###########################################
# #
# THIS EXAMPLE CONTAINS AN EXCAVATION #
# #
###########################################
# Easiest way of figuring out what's happening:
# Run this example, load into paraview, take
# a slice through (0,0,0) with normal (0,0,1),
# colour by pressure and play the animation.
# This mesh has an interior sideset called excav_bdy
[Mesh]
type = FileMesh
file = ex01_input.e
[]
# This is a boundary condition acting on excav_bdy
# All it does is to set the pressure to p_excav=0
# at places on excav_bdy wherever excav_fcn tells it to.
[BCs]
[./excav_bdy]
type = RichardsExcav
boundary = excav_bdy
p_excav = 0.0
variable = pressure
excav_geom_function = excav_fcn
[../]
[]
[Functions]
# excav_fcn controls where to set pressure=p_excav
# You supply start and end positions and times and
# by a linear interpolation these define the position
# of the coal face at all times
[./excav_fcn]
type = RichardsExcavGeom
start_posn = '0 -500 0'
start_time = 0
end_posn = '0 500 0'
end_time = 3E7
active_length = 1E4
[../]
# mass_bal_fcn calculates the mass balance
[./mass_bal_fcn]
type = ParsedFunction
value = abs((mi-fout-mf)/2/(mi+mf))
vars = 'mi mf fout'
vals = 'mass_init mass_final flux_out'
[../]
# initial pressure - unimportant in this example
[./initial_pressure]
type = ParsedFunction
value = -10000*(z-100)
[../]
[]
# following is needed by postprocessors, kernels, etc
# unimportant in this example
[GlobalParams]
richardsVarNames_UO = PPNames
[]
# following does the calculation of relevant
# masses and mass-flux to the excavation
[Postprocessors]
# note that this is calculated at beginning of timestep
[./mass_init]
type = RichardsMass
variable = pressure
execute_on = timestep_begin
[../]
# note this is calculated at end of timestep
[./mass_final]
type = RichardsMass
variable = pressure
execute_on = timestep_end
[../]
# this is what calculates the mass flux to the excavation
# it is calculating it for boundary=excav_bdy, and the
# excavation time-dependence is set through the excav_fcn
[./flux_out]
type = RichardsExcavFlow
boundary = excav_bdy
variable = pressure
excav_geom_function = excav_fcn
[../]
# mass_bal just outputs the result to screen
[./mass_bal]
type = FunctionValuePostprocessor
function = mass_bal_fcn
[../]
[]
######################################
# #
# THE FOLLOWING STUFF IS STANDARD #
# #
######################################
[UserObjects]
[./PPNames]
type = RichardsVarNames
richards_vars = pressure
[../]
[./DensityConstBulk]
type = RichardsDensityConstBulk
dens0 = 1000
bulk_mod = 2E9
[../]
[./Seff1VG]
type = RichardsSeff1VG
m = 0.8
al = 1E-5
[../]
[./RelPermPower]
type = RichardsRelPermPower
simm = 0.0
n = 2
[../]
[./Saturation]
type = RichardsSat
s_res = 0
sum_s_res = 0
[../]
[./SUPGstandard]
type = RichardsSUPGstandard
p_SUPG = 1E+2
[../]
[]
[Variables]
active = 'pressure'
[./pressure]
order = FIRST
family = LAGRANGE
[../]
[]
[ICs]
[./p_ic]
type = FunctionIC
variable = pressure
function = initial_pressure
[../]
[]
[AuxVariables]
[./Seff1VG_Aux]
[../]
[]
[Kernels]
active = 'richardsf richardst'
[./richardst]
type = RichardsMassChange
variable = pressure
[../]
[./richardsf]
type = RichardsFlux
variable = pressure
[../]
[]
[Materials]
[./all]
type = RichardsMaterial
block = '1 2 3 4'
viscosity = 1E-3
mat_porosity = 0.1
mat_permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-15'
density_UO = DensityConstBulk
relperm_UO = RelPermPower
sat_UO = Saturation
seff_UO = Seff1VG
SUPG_UO = SUPGstandard
gravity = '0 0 -10'
linear_shape_fcns = true
[../]
[]
[AuxKernels]
[./Seff1VG_AuxK]
type = RichardsSeffAux
variable = Seff1VG_Aux
seff_UO = Seff1VG
pressure_vars = pressure
[../]
[]
[Preconditioning]
[./usual]
type = SMP
full = true
petsc_options = '-snes_converged_reason'
petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
[../]
[]
[Executioner]
type = Transient
end_time = 3E7
dt = 1E6
solve_type = NEWTON
[]
[Outputs]
execute_on = 'timestep_end'
file_base = ex02
exodus = true
[]
test/tests/mesh_modifiers/sidesets_around_subdomain/around_normals.i
[Mesh]
type = FileMesh
file = twoblocks.e
[]
[MeshModifiers]
[./top_block_1]
type = SideSetsAroundSubdomain
block = 'left'
new_boundary = 'top_of_left_block'
normal = '0 0 1'
[../]
[./bottom_block_2]
type = SideSetsAroundSubdomain
block = 'right'
new_boundary = 'bottom_of_right_block'
normal = '0 0 -1'
[../]
[./right_block_1]
type = SideSetsAroundSubdomain
block = 'left'
new_boundary = 'right_of_left_block'
normal = '1 0 0'
[../]
[./right_block_2]
type = SideSetsAroundSubdomain
block = 'right'
new_boundary = 'right_of_right_block'
normal = '1 0 0'
[../]
[]
# This input file is intended to be run with the "--mesh-only" option so
# no other sections are required
modules/tensor_mechanics/examples/coal_mining/fine.i
# Strata deformation and fracturing around a coal mine - 3D model
#
# A "half model" is used. The mine is 400m deep and
# just the roof is studied (-400<=z<=0). The mining panel
# sits between 0<=x<=150, and 0<=y<=1000, so this simulates
# a coal panel that is 300m wide and 1000m long. The outer boundaries
# are 1km from the excavation boundaries.
#
# Time is meaningless in this example
# as quasi-static solutions are sought at each timestep, but
# the number of timesteps controls the resolution of the
# process.
#
# The boundary conditions for this simulation are:
# - disp_x = 0 at x=0 and x=1150
# - disp_y = 0 at y=-1000 and y=1000
# - disp_z = 0 at z=-400, but there is a time-dependent
# Young's modulus that simulates excavation
# - wc_x = 0 at y=-1000 and y=1000
# - wc_y = 0 at x=0 and x=1150
# That is, rollers on the sides, free at top,
# and prescribed at bottom in the unexcavated portion.
#
# The small strain formulation is used.
#
# All stresses are measured in MPa. The initial stress is consistent with
# the weight force from density 2500 kg/m^3, ie, stress_zz = 0.025*z MPa
# where gravity = 10 m.s^-2 = 1E-5 MPa m^2/kg. The maximum and minimum
# principal horizontal stresses are assumed to be equal to 0.8*stress_zz.
#
# Material properties:
# Young's modulus = 8 GPa
# Poisson's ratio = 0.25
# Cosserat layer thickness = 1 m
# Cosserat-joint normal stiffness = large
# Cosserat-joint shear stiffness = 1 GPa
# MC cohesion = 3 MPa
# MC friction angle = 37 deg
# MC dilation angle = 8 deg
# MC tensile strength = 1 MPa
# MC compressive strength = 100 MPa
# WeakPlane cohesion = 0.1 MPa
# WeakPlane friction angle = 30 deg
# WeakPlane dilation angle = 10 deg
# WeakPlane tensile strength = 0.1 MPa
# WeakPlane compressive strength = 100 MPa softening to 1 MPa at strain = 1
#
[Mesh]
type = FileMesh
file = mesh/fine.e
[]
[GlobalParams]
perform_finite_strain_rotations = false
displacements = 'disp_x disp_y disp_z'
Cosserat_rotations = 'wc_x wc_y wc_z'
[]
[MeshModifiers]
[./xmin]
type = SideSetsAroundSubdomain
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
new_boundary = xmin
normal = '-1 0 0'
[../]
[./xmax]
type = SideSetsAroundSubdomain
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
new_boundary = xmax
normal = '1 0 0'
[../]
[./ymin]
type = SideSetsAroundSubdomain
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
new_boundary = ymin
normal = '0 -1 0'
[../]
[./ymax]
type = SideSetsAroundSubdomain
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
new_boundary = ymax
normal = '0 1 0'
[../]
[./zmax]
type = SideSetsAroundSubdomain
block = 30
new_boundary = zmax
normal = '0 0 1'
[../]
[./zmin]
type = SideSetsAroundSubdomain
block = 2
new_boundary = zmin
normal = '0 0 -1'
[../]
[./excav]
type = SubdomainBoundingBox
depends_on = 'xmin xmax ymin ymax zmin zmax'
block_id = 1
bottom_left = '0 0 -400'
top_right = '150 1000 -397'
[../]
[./roof]
type = SideSetsAroundSubdomain
block = 1
depends_on = excav
new_boundary = roof
normal = '0 0 1'
[../]
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[./disp_z]
[../]
[./wc_x]
[../]
[./wc_y]
[../]
[]
[Kernels]
[./cx_elastic]
type = CosseratStressDivergenceTensors
use_displaced_mesh = false
variable = disp_x
component = 0
[../]
[./cy_elastic]
type = CosseratStressDivergenceTensors
use_displaced_mesh = false
variable = disp_y
component = 1
[../]
[./cz_elastic]
type = CosseratStressDivergenceTensors
use_displaced_mesh = false
variable = disp_z
component = 2
[../]
[./x_couple]
type = StressDivergenceTensors
use_displaced_mesh = false
variable = wc_x
displacements = 'wc_x wc_y wc_z'
component = 0
base_name = couple
[../]
[./y_couple]
type = StressDivergenceTensors
use_displaced_mesh = false
variable = wc_y
displacements = 'wc_x wc_y wc_z'
component = 1
base_name = couple
[../]
[./x_moment]
type = MomentBalancing
use_displaced_mesh = false
variable = wc_x
component = 0
[../]
[./y_moment]
type = MomentBalancing
use_displaced_mesh = false
variable = wc_y
component = 1
[../]
[./gravity]
type = Gravity
use_displaced_mesh = false
variable = disp_z
value = -10E-6 # remember this is in MPa
[../]
[]
[AuxVariables]
[./wc_z]
[../]
[./stress_xx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xz]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yz]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zz]
order = CONSTANT
family = MONOMIAL
[../]
[./mc_shear]
order = CONSTANT
family = MONOMIAL
[../]
[./mc_tensile]
order = CONSTANT
family = MONOMIAL
[../]
[./wp_shear]
order = CONSTANT
family = MONOMIAL
[../]
[./wp_tensile]
order = CONSTANT
family = MONOMIAL
[../]
[./wp_shear_f]
order = CONSTANT
family = MONOMIAL
[../]
[./wp_tensile_f]
order = CONSTANT
family = MONOMIAL
[../]
[./mc_shear_f]
order = CONSTANT
family = MONOMIAL
[../]
[./mc_tensile_f]
order = CONSTANT
family = MONOMIAL
[../]
[]
[AuxKernels]
[./stress_xx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xx
index_i = 0
index_j = 0
[../]
[./stress_xy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xy
index_i = 0
index_j = 1
[../]
[./stress_xz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xz
index_i = 0
index_j = 2
[../]
[./stress_yx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yx
index_i = 1
index_j = 0
[../]
[./stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
[../]
[./stress_yz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yz
index_i = 1
index_j = 2
[../]
[./stress_zx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zx
index_i = 2
index_j = 0
[../]
[./stress_zy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zy
index_i = 2
index_j = 1
[../]
[./stress_zz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zz
index_i = 2
index_j = 2
[../]
[./mc_shear]
type = MaterialStdVectorAux
index = 0
property = mc_plastic_internal_parameter
variable = mc_shear
[../]
[./mc_tensile]
type = MaterialStdVectorAux
index = 1
property = mc_plastic_internal_parameter
variable = mc_tensile
[../]
[./wp_shear]
type = MaterialStdVectorAux
index = 0
property = wp_plastic_internal_parameter
variable = wp_shear
[../]
[./wp_tensile]
type = MaterialStdVectorAux
index = 1
property = wp_plastic_internal_parameter
variable = wp_tensile
[../]
[./mc_shear_f]
type = MaterialStdVectorAux
index = 6
property = mc_plastic_yield_function
variable = mc_shear_f
[../]
[./mc_tensile_f]
type = MaterialStdVectorAux
index = 0
property = mc_plastic_yield_function
variable = mc_tensile_f
[../]
[./wp_shear_f]
type = MaterialStdVectorAux
index = 0
property = wp_plastic_yield_function
variable = wp_shear_f
[../]
[./wp_tensile_f]
type = MaterialStdVectorAux
index = 1
property = wp_plastic_yield_function
variable = wp_tensile_f
[../]
[]
[BCs]
[./no_x]
type = PresetBC
variable = disp_x
boundary = 'xmin xmax'
value = 0.0
[../]
[./no_y]
type = PresetBC
variable = disp_y
boundary = 'ymin ymax'
value = 0.0
[../]
[./no_z]
type = PresetBC
variable = disp_z
boundary = zmin
value = 0.0
[../]
[./no_wc_x]
type = PresetBC
variable = wc_x
boundary = 'ymin ymax'
value = 0.0
[../]
[./no_wc_y]
type = PresetBC
variable = wc_y
boundary = 'xmin xmax'
value = 0.0
[../]
[./roof]
type = StickyBC
variable = disp_z
min_value = -3.0
boundary = roof
[../]
[]
[Functions]
[./ini_xx]
type = ParsedFunction
value = '0.8*2500*10E-6*z'
[../]
[./ini_zz]
type = ParsedFunction
value = '2500*10E-6*z'
[../]
[./excav_sideways]
type = ParsedFunction
vars = 'end_t ymin ymax minval maxval slope'
vals = '100.0 0 1000.0 1E-9 1 10'
# excavation face at ymin+(ymax-ymin)*min(t/end_t,1)
# slope is the distance over which the modulus reduces from maxval to minval
value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),minval,if(y<ymin+(ymax-ymin)*min(t/end_t,1)+slope,minval+(maxval-minval)*(y-(ymin+(ymax-ymin)*min(t/end_t,1)))/slope,maxval))'
[../]
[./density_sideways]
type = ParsedFunction
vars = 'end_t ymin ymax minval maxval'
vals = '100.0 0 1000.0 0 2500'
value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),minval,maxval)'
[../]
[]
[UserObjects]
[./mc_coh_strong_harden]
type = TensorMechanicsHardeningExponential
value_0 = 2.99 # MPa
value_residual = 3.01 # MPa
rate = 1.0
[../]
[./mc_fric]
type = TensorMechanicsHardeningConstant
value = 0.65 # 37deg
[../]
[./mc_dil]
type = TensorMechanicsHardeningConstant
value = 0.15 # 8deg
[../]
[./mc_tensile_str_strong_harden]
type = TensorMechanicsHardeningExponential
value_0 = 1.0 # MPa
value_residual = 1.0 # MPa
rate = 1.0
[../]
[./mc_compressive_str]
type = TensorMechanicsHardeningCubic
value_0 = 100 # Large!
value_residual = 100
internal_limit = 0.1
[../]
[./wp_coh_harden]
type = TensorMechanicsHardeningCubic
value_0 = 0.1
value_residual = 0.1
internal_limit = 10
[../]
[./wp_tan_fric]
type = TensorMechanicsHardeningConstant
value = 0.36 # 20deg
[../]
[./wp_tan_dil]
type = TensorMechanicsHardeningConstant
value = 0.18 # 10deg
[../]
[./wp_tensile_str_harden]
type = TensorMechanicsHardeningCubic
value_0 = 0.1
value_residual = 0.1
internal_limit = 10
[../]
[./wp_compressive_str_soften]
type = TensorMechanicsHardeningCubic
value_0 = 100
value_residual = 1
internal_limit = 1.0
[../]
[]
[Materials]
[./elasticity_tensor_0]
type = ComputeLayeredCosseratElasticityTensor
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
young = 8E3 # MPa
poisson = 0.25
layer_thickness = 1.0
joint_normal_stiffness = 1E9 # huge
joint_shear_stiffness = 1E3 # MPa
[../]
[./elasticity_tensor_1]
type = ComputeLayeredCosseratElasticityTensor
block = 1
young = 8E3 # MPa
poisson = 0.25
layer_thickness = 1.0
joint_normal_stiffness = 1E9 # huge
joint_shear_stiffness = 1E3 # MPa
elasticity_tensor_prefactor = excav_sideways
[../]
[./strain]
type = ComputeCosseratIncrementalSmallStrain
eigenstrain_names = ini_stress
[../]
[./ini_stress]
type = ComputeEigenstrainFromInitialStress
eigenstrain_name = ini_stress
initial_stress = 'ini_xx 0 0 0 ini_xx 0 0 0 ini_zz'
[../]
[./stress_0]
type = ComputeMultipleInelasticCosseratStress
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
inelastic_models = 'mc wp'
cycle_models = true
relative_tolerance = 2.0
absolute_tolerance = 1E6
max_iterations = 1
tangent_operator = nonlinear
perform_finite_strain_rotations = false
[../]
[./stress_1]
type = ComputeMultipleInelasticCosseratStress
block = 1
inelastic_models = ''
relative_tolerance = 2.0
absolute_tolerance = 1E6
max_iterations = 1
tangent_operator = nonlinear
perform_finite_strain_rotations = false
[../]
[./mc]
type = CappedMohrCoulombCosseratStressUpdate
warn_about_precision_loss = false
host_youngs_modulus = 8E3
host_poissons_ratio = 0.25
base_name = mc
tensile_strength = mc_tensile_str_strong_harden
compressive_strength = mc_compressive_str
cohesion = mc_coh_strong_harden
friction_angle = mc_fric
dilation_angle = mc_dil
max_NR_iterations = 100000
smoothing_tol = 0.1 # MPa # Must be linked to cohesion
yield_function_tol = 1E-9 # MPa. this is essentially the lowest possible without lots of precision loss
perfect_guess = true
min_step_size = 1.0
[../]
[./wp]
type = CappedWeakPlaneCosseratStressUpdate
warn_about_precision_loss = false
base_name = wp
cohesion = wp_coh_harden
tan_friction_angle = wp_tan_fric
tan_dilation_angle = wp_tan_dil
tensile_strength = wp_tensile_str_harden
compressive_strength = wp_compressive_str_soften
max_NR_iterations = 10000
tip_smoother = 0.1
smoothing_tol = 0.1 # MPa # Note, this must be tied to cohesion, otherwise get no possible return at cone apex
yield_function_tol = 1E-11 # MPa. this is essentially the lowest possible without lots of precision loss
perfect_guess = true
min_step_size = 1.0E-3
[../]
[./density_0]
type = GenericConstantMaterial
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
prop_names = density
prop_values = 2500
[../]
[./density_1]
type = GenericFunctionMaterial
block = 1
prop_names = density
prop_values = density_sideways
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[]
[]
[Postprocessors]
[./min_roof_disp]
type = NodalExtremeValue
boundary = roof
value_type = min
variable = disp_z
[../]
[./min_surface_disp]
type = NodalExtremeValue
boundary = zmax
value_type = min
variable = disp_z
[../]
[]
[Executioner]
type = Transient
solve_type = 'NEWTON'
petsc_options = '-snes_converged_reason'
petsc_options_iname = '-pc_type -ksp_type -ksp_gmres_restart'
petsc_options_value = ' bjacobi gmres 200'
line_search = bt
nl_abs_tol = 1e-3
nl_rel_tol = 1e-5
l_max_its = 30
nl_max_its = 1000
start_time = 0.0
dt = 0.5
end_time = 100.0
[]
[Outputs]
interval = 1
print_linear_residuals = false
exodus = true
csv = true
console = true
[]
test/tests/outputs/oversample/oversample_file.i
[Mesh]
type = FileMesh
file = square.e
dim = 2
uniform_refine = 1
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = 1
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = 2
value = 1
[../]
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
execute_on = 'timestep_end'
[./exodus]
type = Exodus
refinements = 1
file_base = exodus_oversample_custom_name
[../]
[]
test/tests/variables/simple_restricted/simple_restricted.i
[Mesh]
type = FileMesh
file = simple_multiblock.e
dim = 2
[]
[Variables]
[./u]
[../]
[./v]
block = right
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[./diff_v]
type = Diffusion
variable = v
block = right
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = left
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = right
value = 1
[../]
[./middle_v]
type = DirichletBC
variable = v
boundary = middle
value = 3
[../]
[./right_v]
type = DirichletBC
variable = v
boundary = right
value = 4
[../]
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
test/tests/auxkernels/solution_aux/solution_aux_exodus_interp_restart2.i
[Mesh]
# This test uses SolutionUserObject which doesn't work with DistributedMesh.
type = FileMesh
file = cubesource.e
parallel_type = replicated
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
initial_condition = 0.0
[../]
[]
[AuxVariables]
[./nn]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[AuxKernels]
[./nn]
type = SolutionAux
variable = nn
solution = soln
[../]
[]
[UserObjects]
[./soln]
type = SolutionUserObject
mesh = cubesource.e
system_variables = source_nodal
[../]
[]
[BCs]
[./stuff]
type = DirichletBC
variable = u
boundary = '1 2'
value = 0.0
[../]
[]
[Executioner]
type = Transient
solve_type = NEWTON
l_max_its = 800
nl_rel_tol = 1e-10
num_steps = 5
start_time = 2.5
end_time = 5
dt = 0.5
[]
[Outputs]
execute_on = 'timestep_end'
exodus = true
[]
[Problem]
restart_file_base = solution_aux_exodus_interp_restart1_out_cp/0005
[]
test/tests/geomsearch/2d_interior_boundary_penetration_locator/2d_interior_boundary_penetration_locator.i
[Mesh]
type = FileMesh
file = meshed_gap.e
dim = 2
[]
[Variables]
[./u]
[../]
[]
[AuxVariables]
[./gap_distance]
[../]
[./gap_value]
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = 1
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = 4
value = 1
[../]
[]
[AuxKernels]
[./penetration]
type = PenetrationAux
variable = gap_distance
boundary = 2
paired_boundary = 3
[../]
[./gap_value]
type = GapValueAux
variable = gap_value
boundary = 2
paired_variable = u
paired_boundary = 3
[../]
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
test/tests/materials/has_material/has_boundary_prop.i
[Mesh]
type = FileMesh
file = rectangle.e
[]
[Variables]
[./u]
[../]
[]
[Kernels]
active = 'u_diff'
[./u_diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = 1
value = 1
[../]
[./right]
type = MatTestNeumannBC
variable = u
boundary = 2
mat_prop = 'right_bc'
has_check = true
[../]
[]
[Materials]
[./right_bc]
type = GenericConstantMaterial
boundary = 2
prop_names = 'right_bc'
prop_values = '2.0'
[../]
[./other]
type = GenericConstantMaterial
boundary = 1
prop_names = 'other_value'
prop_values = '1.0'
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
[]
[Outputs]
execute_on = 'timestep_end'
exodus = true
[]
test/tests/ics/check_error/two_ics_on_same_block.i
[Mesh]
type = FileMesh
file = 'rectangle.e'
[]
[Variables]
[./u]
[../]
[]
[ICs]
[./block]
type = ConstantIC
variable = u
block = 1
value = 0.5
[../]
[./block2]
type = ConstantIC
variable = u
block = 1
value = 2
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[Executioner]
type = Steady
[]
[Outputs]
[]
test/tests/mesh_modifiers/sidesets_between_subdomains/between.i
[Mesh]
type = FileMesh
file = twoblocks.e
[]
[MeshModifiers]
[./extrude]
type = SideSetsBetweenSubdomains
master_block = 'left'
paired_block = 'right'
new_boundary = 'in_between'
[../]
[]
# This input file is intended to be run with the "--mesh-only" option so
# no other sections are required
test/tests/constraints/coupled_tied_value_constraint/coupled_tied_value_constraint.i
[Mesh]
type = FileMesh
file = split_blocks.e
# NearestNodeLocator, which is needed by CoupledTiedValueConstraint,
# only works with ReplicatedMesh currently
parallel_type = replicated
[]
[Variables]
[./u]
block = left
[../]
[./v]
block = right
[../]
[]
[Kernels]
[./diff_u]
type = Diffusion
variable = u
block = left
[../]
[./diff_v]
type = Diffusion
variable = v
block = right
[../]
[]
[BCs]
active = 'right left'
[./left]
type = DirichletBC
variable = u
boundary = 1
value = 0
[../]
[./right]
type = DirichletBC
variable = v
boundary = 4
value = 1
[../]
[]
[Constraints]
[./value]
type = CoupledTiedValueConstraint
variable = u
slave = 2
master = 3
master_variable = v
[../]
[]
[Preconditioning]
active = 'SMP'
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Steady
solve_type = NEWTON
l_max_its = 100
nl_max_its = 2
[]
[Outputs]
file_base = out
exodus = true
[]
modules/tensor_mechanics/test/tests/radial_disp_aux/cylinder_2d_cartesian.i
# The purpose of this set of tests is to check the values computed
# by the RadialDisplacementAux AuxKernel. They should match the
# radial component of the displacment for a cylindrical or spherical
# model.
# This particular model is of a cylinder subjected to uniform thermal
# expansion represented using a 2D Cartesian model.
[Mesh]
type = FileMesh
file = circle_sector_2d.e
[]
[GlobalParams]
displacements = 'disp_x disp_y'
order = SECOND
family = LAGRANGE
[]
[AuxVariables]
[./temp]
[../]
[./rad_disp]
[../]
[]
[Functions]
[./temperature_load]
type = ParsedFunction
value = t+300.0
[../]
[]
[Modules/TensorMechanics/Master]
[./all]
strain = FINITE
add_variables = true
eigenstrain_names = eigenstrain
[../]
[]
[AuxKernels]
[./tempfuncaux]
type = FunctionAux
variable = temp
function = temperature_load
use_displaced_mesh = false
[../]
[./raddispaux]
type = RadialDisplacementCylinderAux
variable = rad_disp
origin = '0 0 0'
[../]
[]
[BCs]
[./x]
type = DirichletBC
variable = disp_x
boundary = 1
value = 0.0
[../]
[./y]
type = DirichletBC
variable = disp_y
boundary = 2
value = 0.0
[../]
[]
[Materials]
[./elasticity_tensor]
type = ComputeIsotropicElasticityTensor
youngs_modulus = 2.1e5
poissons_ratio = 0.3
[../]
[./small_stress]
type = ComputeFiniteStrainElasticStress
[../]
[./thermal_expansion]
type = ComputeThermalExpansionEigenstrain
stress_free_temperature = 300
thermal_expansion_coeff = 1.3e-5
temperature = temp
eigenstrain_name = eigenstrain
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options = '-snes_ksp_ew'
petsc_options_iname = '-ksp_gmres_restart'
petsc_options_value = '51'
line_search = 'none'
l_max_its = 50
nl_max_its = 50
nl_rel_tol = 1e-10
nl_abs_tol = 1e-10
start_time = 0.0
end_time = 1
dt = 1
dtmin = 1
[]
[Outputs]
csv = true
exodus = true
[]
#[Postprocessors]
# [./strain_xx]
# type = SideAverageValue
# variable =
# block = 0
# [../]
#[]
test/tests/restart/duplicate_node/duplicate_node.i
[Mesh]
type = FileMesh
file = duplicate_nodes.e
dim = 2
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = CoefDiffusion
variable = u
coef = 0.1
[../]
[./time]
type = TimeDerivative
variable = u
[../]
[]
[BCs]
[./top]
type = DirichletBC
variable = u
boundary = top
value = 1
[../]
[./bottom]
type = DirichletBC
variable = u
boundary = bottom
value = 0
[../]
[]
[Executioner]
type = Transient
num_steps = 20
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
modules/functional_expansion_tools/examples/3D_volumetric_cylindrical/sub.i
# Basic example coupling a master and sub app in a 3D cylindrical mesh from an input file
#
# The master app provides field values to the sub app via Functional Expansions, which then performs
# its calculations. The sub app's solution field values are then transferred back to the master app
# and coupled into the solution of the master app solution.
#
# This example couples Functional Expansions via AuxVariable, the recommended approach.
#
# Note: this problem is not light, and may take a few minutes to solve.
[Mesh]
type = FileMesh
file = cyl-tet.e
[]
# Non-copy transfers only work with AuxVariable, but nothing will be solved without a variable
# defined. The solution is to define an empty variable tha does nothing, but causes MOOSE to solve
# the AuxKernels that we need.
[Variables]
[./empty]
[../]
[]
[AuxVariables]
[./s]
order = FIRST
family = LAGRANGE
[../]
[./m_in]
order = FIRST
family = LAGRANGE
[../]
[]
# We must have a kernel for every variable, hence this null kernel to match the variable 'empty'
[Kernels]
[./null_kernel]
type = NullKernel
variable = empty
[../]
[]
[AuxKernels]
[./reconstruct_m_in]
type = FunctionSeriesToAux
function = FX_Basis_Value_Sub
variable = m_in
[../]
[./calculate_s] # Something to make 's' change each time, but allow a converging solution
type = ParsedAux
variable = s
args = m_in
function = '2*exp(-m_in/0.8)'
[../]
[]
[Functions]
[./FX_Basis_Value_Sub]
type = FunctionSeries
series_type = CylindricalDuo
orders = '5 3' # Axial first, then (r, t) FX
physical_bounds = '-2.5 2.5 0 0 1' # z_min z_max x_center y_center radius
z = Legendre # Axial in z
disc = Zernike # (r, t) default to unit disc in x-y plane
[../]
[]
[UserObjects]
[./FX_Value_UserObject_Sub]
type = FXVolumeUserObject
function = FX_Basis_Value_Sub
variable = s
[../]
[]
[Executioner]
type = Transient
num_steps = 10
dt = 0.5
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
modules/tensor_mechanics/test/tests/coupled_pressure/coupled_pressure_test.i
#
# Pressure Test
#
# This test is designed to compute pressure loads on three faces of a unit cube.
# The pressure is computed as an auxiliary variable. It should give the same result
# as pressure_test.i
#
# The mesh is composed of one block with a single element. Symmetry bcs are
# applied to the faces opposite the pressures. Poisson's ratio is zero,
# which makes it trivial to check displacements.
#
[GlobalParams]
displacements = 'disp_x disp_y disp_z'
[]
[Mesh]
type = FileMesh
file = pressure_test.e
[]
[Functions]
[./rampConstant]
type = PiecewiseLinear
x = '0. 1. 2.'
y = '0. 1. 1.'
scale_factor = 1.0
[../]
[./zeroRamp]
type = PiecewiseLinear
x = '0. 1. 2.'
y = '0. 0. 1.'
scale_factor = 2.0
[../]
[./rampUnramp]
type = PiecewiseLinear
x = '0. 1. 2.'
y = '0. 1. 0.'
scale_factor = 10.0
[../]
[]
[AuxVariables]
[./pressure_1]
[../]
[./pressure_2]
[../]
[./pressure_3]
[../]
[]
[AuxKernels]
[./side1_pressure_ak]
type = FunctionAux
variable = pressure_1
boundary = 1
function = rampConstant
[../]
[./side2_pressure_ak]
type = FunctionAux
variable = pressure_2
boundary = 2
function = zeroRamp
[../]
[./side3_pressure_ak]
type = FunctionAux
variable = pressure_3
boundary = 3
function = rampUnramp
[../]
[]
[Modules]
[./TensorMechanics]
[./Master]
[./all]
strain = SMALL
add_variables = true
[../]
[../]
[../]
[]
[BCs]
[./no_x]
type = DirichletBC
variable = disp_x
boundary = 4
value = 0.0
[../]
[./no_y]
type = DirichletBC
variable = disp_y
boundary = 5
value = 0.0
[../]
[./no_z]
type = DirichletBC
variable = disp_z
boundary = 6
value = 0.0
[../]
[./CoupledPressure]
[./Side1]
boundary = '1'
pressure = pressure_1
displacements = 'disp_x disp_y disp_z'
[../]
[./Side2]
boundary = '2'
pressure = pressure_2
displacements = 'disp_x disp_y disp_z'
[../]
[../]
[./side3_x]
type = CoupledPressureBC
variable = 'disp_x'
boundary = '3'
pressure = pressure_3
component = 0
[../]
[./side3_y]
type = CoupledPressureBC
variable = 'disp_y'
boundary = '3'
pressure = pressure_3
component = 1
[../]
[./side3_z]
type = CoupledPressureBC
variable = 'disp_z'
boundary = '3'
pressure = pressure_3
component = 2
[../]
[]
[Materials]
[./Elasticity_tensor]
type = ComputeElasticityTensor
fill_method = symmetric_isotropic
C_ijkl = '0 0.5e6'
[../]
[./stress]
type = ComputeLinearElasticStress
[../]
[]
[Executioner]
type = Transient
solve_type = PJFNK
nl_abs_tol = 1e-10
l_max_its = 20
start_time = 0.0
dt = 1.0
num_steps = 2
end_time = 2.0
[]
[Outputs]
[./out]
type = Exodus
elemental_as_nodal = true
[../]
[]
test/tests/auxkernels/solution_aux/solution_aux_direct.i
[Mesh]
type = FileMesh
file = build_out_0001_mesh.xda
# This test uses SolutionUserObject which doesn't work with DistributedMesh.
parallel_type = replicated
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
[../]
[]
[AuxVariables]
[./u_aux]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[AuxKernels]
[./initial_cond_aux]
type = SolutionAux
solution = soln
variable = u_aux
execute_on = initial
direct = true
[../]
[]
[UserObjects]
[./soln]
type = SolutionUserObject
mesh = build_out_0001_mesh.xda
es = build_out_0001.xda
system_variables = u
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = 1
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = 2
value = 1
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
nl_rel_tol = 1e-10
[]
[Outputs]
exodus = true
[]
test/tests/mesh_modifiers/mesh_extruder/extruder_angle.i
[Mesh]
type = FileMesh
file = chimney_quad.e
[]
[MeshModifiers]
[./extrude]
type = MeshExtruder
num_layers = 20
extrusion_vector = '1e-2 1e-2 0'
bottom_sideset = '10'
top_sideset = '20'
[../]
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./bottom]
type = DirichletBC
variable = u
boundary = 10
value = 0
[../]
[./top]
type = DirichletBC
variable = u
boundary = 20
value = 1
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
[]
[Outputs]
file_base = out_quad_angle
exodus = true
[]
modules/functional_expansion_tools/examples/3D_volumetric_cylindrical_subapp_mesh_refine/sub.i
# Derived from the example '3D_volumetric_cylindrical' with the following differences:
#
# 1) The model mesh is refined in the MasterApp by 1
# 2) Mesh adaptivity is enabled for the SubApp
# 3) Output from the SubApp is enabled so that the mesh changes can be visualized
[Mesh]
type = FileMesh
file = cyl-tet.e
[]
[Adaptivity]
marker = errorfrac
steps = 2
[./Indicators]
[./error]
type = GradientJumpIndicator
variable = s
outputs = none
[../]
[../]
[./Markers]
[./errorfrac]
type = ErrorFractionMarker
refine = 0.4
coarsen = 0.1
indicator = error
outputs = none
[../]
[../]
[]
# Non-copy transfers only work with AuxVariable, but nothing will be solved without a variable
# defined. The solution is to define an empty variable tha does nothing, but causes MOOSE to solve
# the AuxKernels that we need.
[Variables]
[./empty]
[../]
[]
[AuxVariables]
[./s]
order = FIRST
family = LAGRANGE
[../]
[./m_in]
order = FIRST
family = LAGRANGE
[../]
[]
# We must have a kernel for every variable, hence this null kernel to match the variable 'empty'
[Kernels]
[./null_kernel]
type = NullKernel
variable = empty
[../]
[]
[AuxKernels]
[./reconstruct_m_in]
type = FunctionSeriesToAux
function = FX_Basis_Value_Sub
variable = m_in
[../]
[./calculate_s] # Something to make 's' change each time, but allow a converging solution
type = ParsedAux
variable = s
args = m_in
function = '2*exp(-m_in/0.8)'
[../]
[]
[Functions]
[./FX_Basis_Value_Sub]
type = FunctionSeries
series_type = CylindricalDuo
orders = '5 3' # Axial first, then (r, t) FX
physical_bounds = '-2.5 2.5 0 0 1' # z_min z_max x_center y_center radius
z = Legendre # Axial in z
disc = Zernike # (r, t) default to unit disc in x-y plane
[../]
[]
[UserObjects]
[./FX_Value_UserObject_Sub]
type = FXVolumeUserObject
function = FX_Basis_Value_Sub
variable = s
[../]
[]
[Executioner]
type = Transient
num_steps = 10
dt = 0.5
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
file_base = sub
[]
test/tests/mesh_modifiers/mesh_extruder/extruder_quad.i
[Mesh]
type = FileMesh
file = chimney_quad.e
[]
[MeshModifiers]
[./extrude]
type = MeshExtruder
num_layers = 20
extrusion_vector = '0 1e-2 0'
bottom_sideset = 'new_bottom'
top_sideset = 'new_top'
[../]
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./bottom]
type = DirichletBC
variable = u
boundary = 'new_bottom'
value = 0
[../]
[./top]
type = DirichletBC
variable = u
boundary = 'new_top'
value = 1
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
[]
[Outputs]
file_base = out_quad
exodus = true
[]
modules/functional_expansion_tools/examples/3D_volumetric_cylindrical_subapp_mesh_refine/main.i
# Derived from the example '3D_volumetric_cylindrical' with the following differences:
#
# 1) The model mesh is refined in the MasterApp by 1
# 2) Mesh adaptivity is enabled for the SubApp
# 3) Output from the SubApp is enabled so that the mesh changes can be visualized
[Mesh]
type = FileMesh
file = cyl-tet.e
uniform_refine = 1
[]
[Variables]
[./m]
order = FIRST
family = LAGRANGE
[../]
[]
[AuxVariables]
[./s_in]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./diff_m]
type = HeatConduction
variable = m
[../]
[./time_diff_m]
type = HeatConductionTimeDerivative
variable = m
[../]
[./s_in] # Add in the contribution from the SubApp
type = CoupledForce
variable = m
v = s_in
[../]
[]
[AuxKernels]
[./reconstruct_s_in]
type = FunctionSeriesToAux
variable = s_in
function = FX_Basis_Value_Main
[../]
[]
[Materials]
[./Unobtanium]
type = GenericConstantMaterial
prop_names = 'thermal_conductivity specific_heat density'
prop_values = '1.0 1.0 1.0' # W/(cm K), J/(g K), g/cm^3
[../]
[]
[ICs]
[./start_m]
type = ConstantIC
variable = m
value = 1
[../]
[]
[BCs]
[./surround]
type = DirichletBC
variable = m
value = 1
boundary = 'top bottom outside'
[../]
[]
[Functions]
[./FX_Basis_Value_Main]
type = FunctionSeries
series_type = CylindricalDuo
orders = '5 3' # Axial first, then (r, t) FX
physical_bounds = '-2.5 2.5 0 0 1' # z_min z_max x_center y_center radius
z = Legendre # Axial in z
disc = Zernike # (r, t) default to unit disc in x-y plane
[../]
[]
[UserObjects]
[./FX_Value_UserObject_Main]
type = FXVolumeUserObject
function = FX_Basis_Value_Main
variable = m
[../]
[]
[Postprocessors]
[./average_value]
type = ElementAverageValue
variable = m
[../]
[./peak_value]
type = ElementExtremeValue
value_type = max
variable = m
[../]
[./picard_iterations]
type = NumPicardIterations
[../]
[]
[Executioner]
type = Transient
num_steps = 10
dt = 0.5
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
picard_max_its = 30
nl_rel_tol = 1e-8
nl_abs_tol = 1e-9
picard_rel_tol = 1e-8
picard_abs_tol = 1e-9
[]
[Outputs]
exodus = true
[]
[MultiApps]
[./FXTransferApp]
type = TransientMultiApp
input_files = sub.i
output_sub_cycles = true
[../]
[]
[Transfers]
[./ValueToSub]
type = MultiAppFXTransfer
direction = to_multiapp
multi_app = FXTransferApp
this_app_object_name = FX_Value_UserObject_Main
multi_app_object_name = FX_Basis_Value_Sub
[../]
[./ValueToMe]
type = MultiAppFXTransfer
direction = from_multiapp
multi_app = FXTransferApp
this_app_object_name = FX_Basis_Value_Main
multi_app_object_name = FX_Value_UserObject_Sub
[../]
[]
modules/tensor_mechanics/examples/bridge/bridge.i
#
# Bridge linear elasticity example
#
# This example models a bridge using linear elasticity.
# It can be either steel or concrete.
# Gravity is applied
# A pressure of 0.5 MPa is also applied
#
[Mesh]
displacements = 'disp_x disp_y disp_z' #Define displacements for deformed mesh
type = FileMesh #Read in mesh from file
file = bridge.e
boundary_id = '1 2 3 4 5 6' #Assign names to boundaries to make things clearer
boundary_name = 'top left right bottom1 bottom2 bottom3'
[]
[Variables]
[./disp_x]
order = FIRST
family = LAGRANGE
[../]
[./disp_y]
order = FIRST
family = LAGRANGE
[../]
[./disp_z]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./gravity_y]
#Gravity is applied to bridge
type = Gravity
variable = disp_y
value = -9.81
[../]
[./TensorMechanics]
#Stress divergence kernels
displacements = 'disp_x disp_y disp_z'
[../]
[]
[AuxVariables]
[./von_mises]
#Dependent variable used to visualize the Von Mises stress
order = CONSTANT
family = MONOMIAL
[../]
[]
[AuxKernels]
[./von_mises_kernel]
#Calculates the von mises stress and assigns it to von_mises
type = RankTwoScalarAux
variable = von_mises
rank_two_tensor = stress
execute_on = timestep_end
scalar_type = VonMisesStress
[../]
[]
[BCs]
[./Pressure]
[./load]
#Applies the pressure
boundary = top
factor = 5e5 # Pa
disp_x = disp_x
disp_y = disp_y
disp_z = disp_z
[../]
[../]
[./anchor_x]
#Anchors the bottom and sides against deformation in the x-direction
type = PresetBC
variable = disp_x
boundary = 'left right bottom1 bottom2 bottom3'
value = 0.0
[../]
[./anchor_y]
#Anchors the bottom and sides against deformation in the y-direction
type = PresetBC
variable = disp_y
boundary = 'left right bottom1 bottom2 bottom3'
value = 0.0
[../]
[./anchor_z]
#Anchors the bottom and sides against deformation in the z-direction
type = PresetBC
variable = disp_z
boundary = 'left right bottom1 bottom2 bottom3'
value = 0.0
[../]
[]
[Materials]
active = 'density_concrete stress strain elasticity_tensor_concrete'
[./elasticity_tensor_steel]
#Creates the elasticity tensor using steel parameters
youngs_modulus = 210e9 #Pa
poissons_ratio = 0.3
type = ComputeIsotropicElasticityTensor
block = 1
[../]
[./elasticity_tensor_concrete]
#Creates the elasticity tensor using concrete parameters
youngs_modulus = 16.5e9 #Pa
poissons_ratio = 0.2
type = ComputeIsotropicElasticityTensor
block = 1
[../]
[./strain]
#Computes the strain, assuming small strains
type = ComputeSmallStrain
block = 1
displacements = 'disp_x disp_y disp_z'
[../]
[./stress]
#Computes the stress, using linear elasticity
type = ComputeLinearElasticStress
block = 1
[../]
[./density_steel]
#Defines the density of steel
type = GenericConstantMaterial
block = 1
prop_names = density
prop_values = 7850 # kg/m^3
[../]
[./density_concrete]
#Defines the density of concrete
type = GenericConstantMaterial
block = 1
prop_names = density
prop_values = 2400 # kg/m^3
[../]
[]
[Preconditioning]
[./SMP]
#Creates the entire Jacobian, for the Newton solve
type = SMP
full = true
[../]
[]
[Executioner]
#We solve a steady state problem using Newton's iteration
type = Steady
solve_type = NEWTON
nl_rel_tol = 1e-9
l_max_its = 30
l_tol = 1e-4
nl_max_its = 10
petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
petsc_options_value = 'hypre boomeramg 31'
[]
[Outputs]
exodus = true
perf_graph = true
[]
modules/richards/test/tests/dirac/bh27.i
#2-phase version of bh07 (go to steadystate with borehole)
[Mesh]
type = FileMesh
file = bh07_input.e
[]
[GlobalParams]
richardsVarNames_UO = PPNames
density_UO = 'DensityWater DensityGas'
relperm_UO = 'RelPermWater RelPermGas'
SUPG_UO = 'SUPGwater SUPGgas'
sat_UO = 'SatWater SatGas'
seff_UO = 'SeffWater SeffGas'
viscosity = '1E-3 1E-5'
[]
[Functions]
[./dts]
type = PiecewiseLinear
y = '1000 10000'
x = '100 1000'
[../]
[]
[UserObjects]
[./PPNames]
type = RichardsVarNames
richards_vars = 'pwater pgas'
[../]
[./DensityWater]
type = RichardsDensityConstBulk
dens0 = 1000
bulk_mod = 2E9
[../]
[./DensityGas]
type = RichardsDensityConstBulk
dens0 = 1
bulk_mod = 2E6
[../]
[./SeffWater]
type = RichardsSeff2waterVG
m = 0.6
al = 1E-5
[../]
[./SeffGas]
type = RichardsSeff2gasVG
m = 0.6
al = 1E-5
[../]
[./RelPermWater]
type = RichardsRelPermPower
simm = 0.0
n = 2
[../]
[./RelPermGas]
type = RichardsRelPermPower
simm = 0.0
n = 3
[../]
[./SatWater]
type = RichardsSat
s_res = 0.0
sum_s_res = 0.0
[../]
[./SatGas]
type = RichardsSat
s_res = 0.0
sum_s_res = 0.0
[../]
[./SUPGwater]
type = RichardsSUPGnone
[../]
[./SUPGgas]
type = RichardsSUPGnone
[../]
[./borehole_total_outflow_mass]
type = RichardsSumQuantity
[../]
[]
[Variables]
[./pwater]
order = FIRST
family = LAGRANGE
[../]
[./pgas]
order = FIRST
family = LAGRANGE
[../]
[]
[ICs]
[./water_ic]
type = FunctionIC
variable = pwater
function = 1E7
[../]
[./gas_ic]
type = FunctionIC
variable = pgas
function = 1E7
[../]
[]
[BCs]
[./fix_outer_w]
type = DirichletBC
boundary = perimeter
variable = pwater
value = 1E7
[../]
[./fix_outer_g]
type = DirichletBC
boundary = perimeter
variable = pgas
value = 1E7
[../]
[]
[AuxVariables]
[./Seff1VG_Aux]
[../]
[]
[Kernels]
active = 'richardsfwater richardstwater richardsfgas richardstgas'
[./richardstwater]
type = RichardsMassChange
variable = pwater
[../]
[./richardsfwater]
type = RichardsFullyUpwindFlux
variable = pwater
[../]
[./richardstgas]
type = RichardsMassChange
variable = pgas
[../]
[./richardsfgas]
type = RichardsFullyUpwindFlux
variable = pgas
[../]
[]
[AuxKernels]
[./Seff1VG_AuxK]
type = RichardsSeffAux
variable = Seff1VG_Aux
seff_UO = SeffWater
pressure_vars = 'pwater pgas'
[../]
[]
[DiracKernels]
[./bh]
type = RichardsBorehole
bottom_pressure = 0
point_file = bh07.bh
SumQuantityUO = borehole_total_outflow_mass
fully_upwind = true
variable = pwater
unit_weight = '0 0 0'
re_constant = 0.1594
character = 2 # this is to make the length 1m borehole fill the entire 2m height
[../]
[./bh_gas_dummy]
type = RichardsBorehole
bottom_pressure = 0
point_file = bh07.bh
SumQuantityUO = borehole_total_outflow_mass
fully_upwind = true
variable = pgas
unit_weight = '0 0 0'
re_constant = 0.1594
character = 2 # this is to make the length 1m borehole fill the entire 2m height
[../]
[]
[Postprocessors]
[./bh_report]
type = RichardsPlotQuantity
uo = borehole_total_outflow_mass
execute_on = 'initial timestep_end'
[../]
[./water_mass]
type = RichardsMass
variable = pwater
execute_on = 'initial timestep_end'
[../]
[./gas_mass]
type = RichardsMass
variable = pgas
execute_on = 'initial timestep_end'
[../]
[]
[Materials]
[./all]
type = RichardsMaterial
block = 1
mat_porosity = 0.1
mat_permeability = '1E-11 0 0 0 1E-11 0 0 0 1E-11'
gravity = '0 0 0'
linear_shape_fcns = true
[../]
[]
[Preconditioning]
[./usual]
type = SMP
full = true
petsc_options = '-snes_converged_reason -ksp_diagonal_scale -ksp_diagonal_scale_fix -ksp_gmres_modifiedgramschmidt'
petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap -snes_atol -snes_rtol -snes_max_it -ksp_rtol -ksp_atol'
petsc_options_value = 'gmres asm lu NONZERO 2 1E-10 1E-10 20 1E-10 1E-100'
[../]
[]
[Executioner]
type = Transient
end_time = 1000
solve_type = NEWTON
[./TimeStepper]
type = FunctionDT
function = dts
[../]
[]
[Outputs]
file_base = bh27
execute_on = 'initial timestep_end final'
interval = 1000000
exodus = true
[]
test/tests/mesh_modifiers/block_deleter/BlockDeleterTest11.i
# tet elements
[Mesh]
type = FileMesh
file = pyramid.e
[]
[MeshModifiers]
[./sbb2]
type = SubdomainBoundingBox
block_id = 2
bottom_left = '-0.5 -0.5 -0.5'
top_right = '0.5 0.5 0.5'
[../]
[./swiss_cheese2]
type = BlockDeleter
block_id = 2
depends_on = 'sbb2'
[../]
[./sbb3]
type = SubdomainBoundingBox
block_id = 3
bottom_left = '-5 -5 -3'
top_right = '-2 -2 -1'
[../]
[./swiss_cheese3]
type = BlockDeleter
block_id = 3
depends_on = 'sbb3'
[../]
[./sbb4]
type = SubdomainBoundingBox
block_id = 4
bottom_left = '-1 2 -2'
top_right = '1 5 0'
[../]
[./swiss_cheese4]
type = BlockDeleter
block_id = 4
depends_on = 'sbb4'
[../]
[./sbb5]
type = OrientedSubdomainBoundingBox
block_id = 5
center = '2.4 -1.4 0.4'
height = 3
length = 8
length_direction = '-2 1 -1'
width = 3
width_direction = '1 2 0'
[../]
[./swiss_cheese5]
type = BlockDeleter
block_id = 5
depends_on = 'sbb5'
[../]
[./sbb6]
type = OrientedSubdomainBoundingBox
block_id = 6
center = '-1 0.4 2.2'
height = 1
length = 8
length_direction = '2 -1 -1'
width = 1
width_direction = '1 2 0'
[../]
[./swiss_cheese6]
type = BlockDeleter
block_id = 6
depends_on = 'sbb6'
[../]
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./dt]
type = TimeDerivative
variable = u
[../]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./top]
type = DirichletBC
variable = u
boundary = top
value = 1
[../]
[]
[Executioner]
type = Transient
start_time = 0
end_time = 100
dt = 100
solve_type = NEWTON
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
modules/tensor_mechanics/test/tests/mohr_coulomb/uni_axial3.i
[Mesh]
type = FileMesh
file = quarter_hole.e
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[./disp_z]
[../]
[]
[Kernels]
[./TensorMechanics]
displacements = 'disp_x disp_y disp_z'
[../]
[]
[BCs]
[./zmin_zzero]
type = PresetBC
variable = disp_z
boundary = 'zmin'
value = '0'
[../]
[./xmin_xzero]
type = PresetBC
variable = disp_x
boundary = 'xmin'
value = '0'
[../]
[./ymin_yzero]
type = PresetBC
variable = disp_y
boundary = 'ymin'
value = '0'
[../]
[./ymax_disp]
type = FunctionPresetBC
variable = disp_y
boundary = 'ymax'
function = '-1E-4*t'
[../]
[]
[AuxVariables]
[./stress_xx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xz]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yz]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zz]
order = CONSTANT
family = MONOMIAL
[../]
[./mc_int]
order = CONSTANT
family = MONOMIAL
[../]
[./yield_fcn]
order = CONSTANT
family = MONOMIAL
[../]
[]
[AuxKernels]
[./stress_xx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xx
index_i = 0
index_j = 0
[../]
[./stress_xy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xy
index_i = 0
index_j = 1
[../]
[./stress_xz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xz
index_i = 0
index_j = 2
[../]
[./stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
[../]
[./stress_yz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yz
index_i = 1
index_j = 2
[../]
[./stress_zz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zz
index_i = 2
index_j = 2
[../]
[./mc_int_auxk]
type = MaterialStdVectorAux
index = 0
property = plastic_internal_parameter
variable = mc_int
[../]
[./yield_fcn_auxk]
type = MaterialStdVectorAux
index = 0
property = plastic_yield_function
variable = yield_fcn
[../]
[]
[Postprocessors]
[./s_xx]
type = PointValue
point = '0.005 0.02 0.002'
variable = stress_xx
[../]
[./s_xy]
type = PointValue
point = '0.005 0.02 0.002'
variable = stress_xy
[../]
[./s_xz]
type = PointValue
point = '0.005 0.02 0.002'
variable = stress_xz
[../]
[./s_yy]
type = PointValue
point = '0.005 0.02 0.002'
variable = stress_yy
[../]
[./s_yz]
type = PointValue
point = '0.005 0.02 0.002'
variable = stress_yz
[../]
[./s_zz]
type = PointValue
point = '0.005 0.02 0.002'
variable = stress_zz
[../]
[./f]
type = PointValue
point = '0.005 0.02 0.002'
variable = yield_fcn
[../]
[]
[UserObjects]
[./mc_coh]
type = TensorMechanicsHardeningConstant
value = 10E6
[../]
[./mc_phi]
type = TensorMechanicsHardeningConstant
value = 40
convert_to_radians = true
[../]
[./mc_psi]
type = TensorMechanicsHardeningConstant
value = 40
convert_to_radians = true
[../]
[./mc]
type = TensorMechanicsPlasticMohrCoulomb
cohesion = mc_coh
friction_angle = mc_phi
dilation_angle = mc_psi
mc_tip_smoother = 0.01E6
mc_edge_smoother = 29
yield_function_tolerance = 1E-5
internal_constraint_tolerance = 1E-11
[../]
[]
[Materials]
[./elasticity_tensor]
type = ComputeElasticityTensor
block = 1
fill_method = symmetric_isotropic
C_ijkl = '0 5E9' # young = 10Gpa, poisson = 0.0
[../]
[./strain]
type = ComputeIncrementalSmallStrain
block = 1
displacements = 'disp_x disp_y disp_z'
[../]
[./mc]
type = ComputeMultiPlasticityStress
block = 1
ep_plastic_tolerance = 1E-11
plastic_models = mc
max_NR_iterations = 1000
debug_fspb = crash
[../]
[]
# Preconditioning and Executioner options kindly provided by Andrea
[Preconditioning]
[./andy]
type = SMP
full = true
[../]
[]
[Executioner]
end_time = 1.05
dt = 0.1
solve_type = NEWTON
type = Transient
nl_abs_tol = 1E-5
nl_rel_tol = 1E-7
l_tol = 1E-2
l_max_its = 50
nl_max_its = 400
petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
petsc_options_value = ' asm 2 lu gmres 200'
[]
[Outputs]
file_base = uni_axial3
exodus = true
[./csv]
type = CSV
[../]
[]
test/tests/mesh/mesh_only/mesh_only.i
[Mesh]
type = FileMesh
file = chimney_quad.e
uniform_refine = 1
[]
[MeshModifiers]
[./extrude]
type = MeshExtruder
num_layers = 20
extrusion_vector = '0 1e-2 0'
bottom_sideset = '2'
top_sideset = '4'
[../]
[]
# This input file is intended to be run with the "--mesh-only" option so
# no other sections are required
modules/combined/test/tests/chemical_reactions_richards/langmuir_jac3.i
# testing whether when we have a centre block containing 'conc' which is a CONSTANT MONOMIAL, and two-phase Richards flow, we get the correct Jacobian
[Mesh]
type = FileMesh
file = three_eles.e
[]
[GlobalParams]
richardsVarNames_UO = PPNames
density_UO = 'DensityWater DensityGas'
relperm_UO = 'RelPermWater RelPermGas'
SUPG_UO = 'SUPGstandard SUPGstandard'
sat_UO = 'Saturation Saturation'
seff_UO = 'SeffWater SeffGas'
viscosity = '1E-3 1.1E-5'
gravity = '0 0 -10'
linear_shape_fcns = true
[]
[UserObjects]
[./PPNames]
type = RichardsVarNames
richards_vars = 'pwater pgas'
[../]
[./DensityWater]
type = RichardsDensityConstBulk
dens0 = 1000
bulk_mod = 2E9
[../]
[./DensityGas]
type = RichardsDensityMethane20degC
[../]
[./SeffWater]
type = RichardsSeff2waterVG
m = 0.8
al = 1E-5
[../]
[./SeffGas]
type = RichardsSeff2gasVG
m = 0.8
al = 1E-5
[../]
[./RelPermWater]
type = RichardsRelPermPower
simm = 0.2
n = 3
[../]
[./RelPermGas]
type = RichardsRelPermPower
simm = 0.0
n = 3
[../]
[./Saturation]
type = RichardsSat
s_res = 0.0
sum_s_res = 0.0
[../]
[./SUPGstandard]
type = RichardsSUPGstandard
p_SUPG = 1.0E+1
[../]
[]
[Variables]
[./pwater]
[../]
[./pgas]
[../]
[./conc]
family = MONOMIAL
order = CONSTANT
block = centre_block
[../]
[]
[ICs]
[./water]
type = ConstantIC
variable = pwater
value = 0.0
[../]
[./gas]
type = RandomIC
variable = pgas
min = 0
max = 5E5
[../]
[./conc_ic]
type = RandomIC
variable = conc
min = 0
max = 20
block = centre_block
[../]
[]
[Kernels]
[./richardstwater]
type = RichardsMassChange
variable = pwater
[../]
[./richardsfwater]
type = RichardsFlux
variable = pwater
[../]
[./richardstgas]
type = RichardsMassChange
variable = pgas
[../]
[./richardsfgas]
type = RichardsFlux
variable = pgas
[../]
[./c_dot]
type = TimeDerivative
block = centre_block
variable = conc
[../]
[./flow_from_matrix]
type = DesorptionFromMatrix
block = centre_block
variable = conc
pressure_var = pgas
[../]
[./flux_to_porespace]
type = DesorptionToPorespace
block = centre_block
variable = pgas
conc_var = conc
[../]
[]
[Materials]
[./all_blocks]
type = RichardsMaterial
block = 'left_block centre_block right_block'
mat_porosity = 0.02
mat_permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-16'
[../]
[./langmuir_params]
type = LangmuirMaterial
block = centre_block
one_over_desorption_time_const = 0.813
one_over_adsorption_time_const = 0.813
langmuir_density = 20.0
langmuir_pressure = 1.5E6
pressure_var = pgas
conc_var = conc
[../]
[]
[Preconditioning]
[./andy]
type = SMP
full = true
#petsc_options = '-snes_test_display'
petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
[../]
[]
[Executioner]
type = Transient
solve_type = Newton
dt = 1E3 # get rid of the large c_dot contribution
[]
[Outputs]
execute_on = 'timestep_end'
file_base = langmuir_jac3
[]
test/tests/mesh_modifiers/mesh_extruder/extruder_tri.i
[Mesh]
type = FileMesh
file = ellipse_tri.e
[]
[MeshModifiers]
[./extrude]
type = MeshExtruder
num_layers = 20
extrusion_vector = '0 0 5'
bottom_sideset = '2'
top_sideset = '4'
[../]
[]
[Variables]
active = 'u'
[./u]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
active = 'diff'
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./bottom]
type = DirichletBC
variable = u
boundary = 2
value = 0
[../]
[./top]
type = DirichletBC
variable = u
boundary = 4
value = 1
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
[]
[Outputs]
file_base = out_tri
exodus = true
[]
[Debug]
show_actions = true
[]
modules/combined/test/tests/glued_contact_constraint/glued_contact_constraint.i
[Mesh]
type = FileMesh
file = simplest_contact.e
[]
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[]
[AuxVariables]
[./penetration]
[../]
[]
[SolidMechanics]
[./solid]
disp_x = disp_x
disp_y = disp_y
[../]
[]
[AuxKernels]
[./penetration]
type = PenetrationAux
variable = penetration
boundary = 2
paired_boundary = 3
[../]
[]
[Constraints]
[./contact_x]
type = GluedContactConstraint
variable = disp_x
master_variable = disp_x
component = 0
slave = 2
master = 3
penalty = 1e6
nodal_area = penetration
boundary = 2
[../]
[./contact_y]
type = GluedContactConstraint
variable = disp_y
master_variable = disp_y
component = 1
slave = 2
master = 3
penalty = 1e6
nodal_area = penetration
boundary = 3
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
boundary = 1
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
boundary = 1
value = 0.0
[../]
[./right_x]
type = PresetBC
variable = disp_x
boundary = 4
value = -0.0001
[../]
[./right_y]
type = DirichletBC
variable = disp_y
boundary = 4
value = 0.0
[../]
[]
[Materials]
[./stiffStuff1]
type = LinearIsotropicMaterial
block = 1
disp_x = disp_x
disp_y = disp_y
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[]
[Executioner]
type = Transient
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
petsc_options_value = 'hypre boomeramg 101'
line_search = none
nl_abs_tol = 1e-8
l_max_its = 100
nl_max_its = 10
dt = 1.0
num_steps = 1
[]
[Outputs]
file_base = out
[./exodus]
type = Exodus
elemental_as_nodal = true
[../]
[]
test/tests/geomsearch/patch_update_strategy/always.i
[Mesh]
type = FileMesh
file = long_range.e
dim = 2
patch_update_strategy = always
displacements = 'disp_x disp_y'
[]
[Variables]
[./u]
block = right
[../]
[]
[AuxVariables]
[./linear_field]
[../]
[./receiver]
# The field to transfer into
[../]
[./disp_x]
[../]
[./disp_y]
[../]
[./elemental_reciever]
order = CONSTANT
family = MONOMIAL
[../]
[]
[Kernels]
[./diff]
type = CoefDiffusion
variable = u
coef = 1
[../]
[./time]
type = TimeDerivative
variable = u
[../]
[]
[AuxKernels]
[./linear_in_y]
# This just gives us something to transfer that varies in y so we can ensure the transfer is working properly...
type = FunctionAux
variable = linear_field
function = y
execute_on = initial
[../]
[./right_to_left]
type = GapValueAux
variable = receiver
paired_variable = linear_field
paired_boundary = rightleft
execute_on = timestep_end
boundary = leftright
[../]
[./y_displacement]
type = FunctionAux
variable = disp_y
function = t
execute_on = 'linear timestep_begin'
block = left
[../]
[./elemental_right_to_left]
type = GapValueAux
variable = elemental_reciever
paired_variable = linear_field
paired_boundary = rightleft
boundary = leftright
[../]
[]
[BCs]
[./top]
type = DirichletBC
variable = u
boundary = righttop
value = 1
[../]
[./bottom]
type = DirichletBC
variable = u
boundary = rightbottom
value = 0
[../]
[]
[Problem]
type = FEProblem
kernel_coverage_check = false
[]
[Executioner]
type = Transient
num_steps = 30
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
modules/tensor_mechanics/test/tests/mohr_coulomb/uni_axial3_planar.i
# same as uni_axial2 but with planar mohr-coulomb
[Mesh]
type = FileMesh
file = quarter_hole.e
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[./disp_z]
[../]
[]
[Kernels]
[./TensorMechanics]
displacements = 'disp_x disp_y disp_z'
[../]
[]
[BCs]
[./zmin_zzero]
type = PresetBC
variable = disp_z
boundary = 'zmin'
value = '0'
[../]
[./xmin_xzero]
type = PresetBC
variable = disp_x
boundary = 'xmin'
value = '0'
[../]
[./ymin_yzero]
type = PresetBC
variable = disp_y
boundary = 'ymin'
value = '0'
[../]
[./ymax_disp]
type = FunctionPresetBC
variable = disp_y
boundary = 'ymax'
function = '-1E-4*t'
[../]
[]
[AuxVariables]
[./stress_xx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xz]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yz]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zz]
order = CONSTANT
family = MONOMIAL
[../]
[./mc_int]
order = CONSTANT
family = MONOMIAL
[../]
[./yield_fcn]
order = CONSTANT
family = MONOMIAL
[../]
[]
[AuxKernels]
[./stress_xx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xx
index_i = 0
index_j = 0
[../]
[./stress_xy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xy
index_i = 0
index_j = 1
[../]
[./stress_xz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xz
index_i = 0
index_j = 2
[../]
[./stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
[../]
[./stress_yz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yz
index_i = 1
index_j = 2
[../]
[./stress_zz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zz
index_i = 2
index_j = 2
[../]
[./mc_int_auxk]
type = MaterialStdVectorAux
index = 0
property = plastic_internal_parameter
variable = mc_int
[../]
[./yield_fcn_auxk]
type = MaterialStdVectorAux
index = 0
property = plastic_yield_function
variable = yield_fcn
[../]
[]
[Postprocessors]
[./s_xx]
type = PointValue
point = '0.005 0.02 0.002'
variable = stress_xx
[../]
[./s_xy]
type = PointValue
point = '0.005 0.02 0.002'
variable = stress_xy
[../]
[./s_xz]
type = PointValue
point = '0.005 0.02 0.002'
variable = stress_xz
[../]
[./s_yy]
type = PointValue
point = '0.005 0.02 0.002'
variable = stress_yy
[../]
[./s_yz]
type = PointValue
point = '0.005 0.02 0.002'
variable = stress_yz
[../]
[./s_zz]
type = PointValue
point = '0.005 0.02 0.002'
variable = stress_zz
[../]
[./f]
type = PointValue
point = '0.005 0.02 0.002'
variable = yield_fcn
[../]
[]
[UserObjects]
[./coh]
type = TensorMechanicsHardeningConstant
value = 1E7
[../]
[./fric]
type = TensorMechanicsHardeningConstant
value = 40
convert_to_radians = true
[../]
[./dil]
type = TensorMechanicsHardeningConstant
value = 40
convert_to_radians = true
[../]
[./mc]
type = TensorMechanicsPlasticMohrCoulombMulti
cohesion = coh
friction_angle = fric
dilation_angle = dil
yield_function_tolerance = 1.0 # THIS IS HIGHER THAN THE SMOOTH CASE TO AVOID PRECISION-LOSS PROBLEMS!
shift = 1.0
use_custom_returnMap = false
internal_constraint_tolerance = 1E-9
[../]
[]
[Materials]
[./elasticity_tensor]
type = ComputeElasticityTensor
block = 1
fill_method = symmetric_isotropic
C_ijkl = '0 5E9' # young = 10Gpa, poisson = 0.0
[../]
[./strain]
type = ComputeIncrementalSmallStrain
block = 1
displacements = 'disp_x disp_y disp_z'
[../]
[./mc]
type = ComputeMultiPlasticityStress
block = 1
ep_plastic_tolerance = 1E-9
plastic_models = mc
max_NR_iterations = 100
deactivation_scheme = 'safe'
min_stepsize = 1
max_stepsize_for_dumb = 1
debug_fspb = crash
[../]
[]
# Preconditioning and Executioner options kindly provided by Andrea
[Preconditioning]
[./andy]
type = SMP
full = true
[../]
[]
[Executioner]
end_time = 1.05
dt = 0.1
solve_type = NEWTON
type = Transient
l_tol = 1E-2
# These are higher than non-multi case
nl_abs_tol = 1E-1
nl_rel_tol = 1E-5
l_max_its = 200
nl_max_its = 400
petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
petsc_options_value = ' asm 2 lu gmres 200'
[]
[Outputs]
file_base = uni_axial3_planar
[./exodus]
type = Exodus
hide = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz yield_fcn s_xx s_xy s_xz s_yy s_yz s_zz f'
[../]
[./csv]
type = CSV
interval = 1
[../]
[]
modules/richards/test/tests/dirac/bh_lumped_07.i
[Mesh]
type = FileMesh
file = bh07_input.e
[]
[GlobalParams]
richardsVarNames_UO = PPNames
density_UO = DensityConstBulk
relperm_UO = RelPermPower
sat_UO = Saturation
seff_UO = Seff1VG
SUPG_UO = SUPGstandard
[]
[Functions]
[./dts]
type = PiecewiseLinear
y = '1000 10000'
x = '100 1000'
[../]
[]
[UserObjects]
[./PPNames]
type = RichardsVarNames
richards_vars = pressure
[../]
[./DensityConstBulk]
type = RichardsDensityConstBulk
dens0 = 1000
bulk_mod = 2E9
[../]
[./Seff1VG]
type = RichardsSeff1VG
m = 0.8
al = 1E-5
[../]
[./RelPermPower]
type = RichardsRelPermPower
simm = 0.0
n = 2
[../]
[./Saturation]
type = RichardsSat
s_res = 0
sum_s_res = 0
[../]
[./SUPGstandard]
type = RichardsSUPGstandard
p_SUPG = 1E8
[../]
[./borehole_total_outflow_mass]
type = RichardsSumQuantity
[../]
[]
[Variables]
active = 'pressure'
[./pressure]
order = FIRST
family = LAGRANGE
[../]
[]
[ICs]
[./p_ic]
type = FunctionIC
variable = pressure
function = initial_pressure
[../]
[]
[BCs]
[./fix_outer]
type = DirichletBC
boundary = perimeter
variable = pressure
value = 1E7
[../]
[]
[AuxVariables]
[./Seff1VG_Aux]
[../]
[]
[Kernels]
active = 'richardsf richardst'
[./richardst]
type = RichardsLumpedMassChange
variable = pressure
[../]
[./richardsf]
type = RichardsFlux
variable = pressure
[../]
[]
[DiracKernels]
[./bh]
type = RichardsBorehole
bottom_pressure = 0
point_file = bh07.bh
SumQuantityUO = borehole_total_outflow_mass
variable = pressure
unit_weight = '0 0 0'
re_constant = 0.1594
character = 2
[../]
[]
[Postprocessors]
[./bh_report]
type = RichardsPlotQuantity
uo = borehole_total_outflow_mass
execute_on = 'initial timestep_end'
[../]
[./fluid_mass]
type = RichardsMass
variable = pressure
execute_on = 'initial timestep_end'
[../]
[]
[Functions]
[./initial_pressure]
type = ParsedFunction
value = 1E7
[../]
[]
[Materials]
[./all]
type = RichardsMaterial
block = 1
viscosity = 1E-3
mat_porosity = 0.1
mat_permeability = '1E-11 0 0 0 1E-11 0 0 0 1E-11'
gravity = '0 0 0'
linear_shape_fcns = true
[../]
[]
[AuxKernels]
[./Seff1VG_AuxK]
type = RichardsSeffAux
variable = Seff1VG_Aux
seff_UO = Seff1VG
pressure_vars = pressure
[../]
[]
[Preconditioning]
[./usual]
type = SMP
full = true
petsc_options = '-snes_converged_reason'
petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
[../]
[]
[Executioner]
type = Transient
end_time = 1000
solve_type = NEWTON
[./TimeStepper]
# get only marginally better results for smaller time steps
type = FunctionDT
function = dts
[../]
[]
[Outputs]
file_base = bh_lumped_07
execute_on = 'initial timestep_end final'
interval = 10000
exodus = true
[]
modules/tensor_mechanics/test/tests/radial_disp_aux/sphere_3d_cartesian.i
# The purpose of this set of tests is to check the values computed
# by the RadialDisplacementAux AuxKernel. They should match the
# radial component of the displacment for a cylindrical or spherical
# model.
# This particular model is of a sphere subjected to uniform thermal
# expansion represented using a 3D Cartesian model.
[Mesh]
type = FileMesh
file = sphere_sector_3d.e
[]
[GlobalParams]
displacements = 'disp_x disp_y disp_z'
order = SECOND
family = LAGRANGE
[]
[AuxVariables]
[./temp]
[../]
[./rad_disp]
[../]
[]
[Functions]
[./temperature_load]
type = ParsedFunction
value = t+300.0
[../]
[]
[Modules/TensorMechanics/Master]
[./all]
strain = FINITE
add_variables = true
eigenstrain_names = eigenstrain
[../]
[]
[AuxKernels]
[./tempfuncaux]
type = FunctionAux
variable = temp
function = temperature_load
use_displaced_mesh = false
[../]
[./raddispaux]
type = RadialDisplacementSphereAux
variable = rad_disp
origin = '0 0 0'
[../]
[]
[BCs]
[./x]
type = DirichletBC
variable = disp_x
boundary = 1
value = 0.0
[../]
[./y]
type = DirichletBC
variable = disp_y
boundary = 2
value = 0.0
[../]
[./z]
type = DirichletBC
variable = disp_z
boundary = 3
value = 0.0
[../]
[]
[Materials]
[./elasticity_tensor]
type = ComputeIsotropicElasticityTensor
youngs_modulus = 2.1e5
poissons_ratio = 0.3
[../]
[./small_stress]
type = ComputeFiniteStrainElasticStress
[../]
[./thermal_expansion]
type = ComputeThermalExpansionEigenstrain
stress_free_temperature = 300
thermal_expansion_coeff = 1.3e-5
temperature = temp
eigenstrain_name = eigenstrain
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options = '-snes_ksp_ew'
petsc_options_iname = '-ksp_gmres_restart'
petsc_options_value = '51'
line_search = 'none'
l_max_its = 50
nl_max_its = 50
nl_rel_tol = 1e-12
nl_abs_tol = 1e-10
start_time = 0.0
end_time = 1
dt = 1
dtmin = 1
[]
[Outputs]
csv = true
exodus = true
[]
#[Postprocessors]
# [./strain_xx]
# type = SideAverageValue
# variable =
# block = 0
# [../]
#[]
modules/tensor_mechanics/test/tests/beam/static/euler_finite_rot_z.i
# Large strain/large rotation cantilever beam test
# A 300 N point load is applied at the end of a 4 m long cantilever beam.
# Young's modulus (E) = 1e4
# Shear modulus (G) = 1e8
# Poisson's ratio (nu) = -0.99995
# shear coefficient (k) = 1.0
# Area (A) = 1.0
# Iy = Iz = 0.16
# The dimensionless parameter alpha = kAGL^2/EI = 1e6
# Since the value of alpha ia quite high, the beam behaves like
# a thin beam where shear effects are not significant.
# Beam deflection:
# small strain+rot = 3.998 m (exact 4.0)
# large strain + small rotation = -0.05 m in x and 3.74 m in z
# large rotations + small strain = -0.92 m in x and 2.38 m in z
# large rotations + large strain = -0.954 m in x and 2.37 m in z (exact -1.0 m in x and 2.4 m in z)
# References:
# K. E. Bisshopp and D.C. Drucker, Quaterly of Applied Mathematics, Vol 3, No. 3, 1945.
[Mesh]
type = FileMesh
file = beam_finite_rot_test_2.e
displacements = 'disp_x disp_y disp_z'
[]
[Variables]
[./disp_x]
order = FIRST
family = LAGRANGE
[../]
[./disp_y]
order = FIRST
family = LAGRANGE
[../]
[./disp_z]
order = FIRST
family = LAGRANGE
[../]
[./rot_x]
order = FIRST
family = LAGRANGE
[../]
[./rot_y]
order = FIRST
family = LAGRANGE
[../]
[./rot_z]
order = FIRST
family = LAGRANGE
[../]
[]
[BCs]
[./fixx1]
type = DirichletBC
variable = disp_x
boundary = 1
value = 0.0
[../]
[./fixy1]
type = DirichletBC
variable = disp_y
boundary = 1
value = 0.0
[../]
[./fixz1]
type = DirichletBC
variable = disp_z
boundary = 1
value = 0.0
[../]
[./fixr1]
type = DirichletBC
variable = rot_x
boundary = 1
value = 0.0
[../]
[./fixr2]
type = DirichletBC
variable = rot_y
boundary = 1
value = 0.0
[../]
[./fixr3]
type = DirichletBC
variable = rot_z
boundary = 1
value = 0.0
[../]
[]
[NodalKernels]
[./force_z2]
type = UserForcingFunctionNodalKernel
variable = disp_z
boundary = 2
function = force
[../]
[]
[Functions]
[./force]
type = PiecewiseLinear
x = '0.0 2.0 8.0'
y = '0.0 300.0 300.0'
[../]
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
solve_type = PJFNK
line_search = 'none'
petsc_options = '-snes_ksp_ew'
petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
petsc_options_value = '201 hypre boomeramg 4'
nl_max_its = 50
nl_rel_tol = 1e-9
nl_abs_tol = 1e-7
l_max_its = 50
dt = 0.05
end_time = 2.1
[]
[Kernels]
[./solid_disp_x]
type = StressDivergenceBeam
block = '1'
displacements = 'disp_x disp_y disp_z'
rotations = 'rot_x rot_y rot_z'
component = 0
variable = disp_x
[../]
[./solid_disp_y]
type = StressDivergenceBeam
block = '1'
displacements = 'disp_x disp_y disp_z'
rotations = 'rot_x rot_y rot_z'
component = 1
variable = disp_y
[../]
[./solid_disp_z]
type = StressDivergenceBeam
block = '1'
displacements = 'disp_x disp_y disp_z'
rotations = 'rot_x rot_y rot_z'
component = 2
variable = disp_z
[../]
[./solid_rot_x]
type = StressDivergenceBeam
block = '1'
displacements = 'disp_x disp_y disp_z'
rotations = 'rot_x rot_y rot_z'
component = 3
variable = rot_x
[../]
[./solid_rot_y]
type = StressDivergenceBeam
block = '1'
displacements = 'disp_x disp_y disp_z'
rotations = 'rot_x rot_y rot_z'
component = 4
variable = rot_y
[../]
[./solid_rot_z]
type = StressDivergenceBeam
block = '1'
displacements = 'disp_x disp_y disp_z'
rotations = 'rot_x rot_y rot_z'
component = 5
variable = rot_z
[../]
[]
[Materials]
[./elasticity]
type = ComputeElasticityBeam
youngs_modulus = 1e4
poissons_ratio = -0.99995
shear_coefficient = 1.0
block = 1
[../]
[./strain]
type = ComputeFiniteBeamStrain
block = '1'
displacements = 'disp_x disp_y disp_z'
rotations = 'rot_x rot_y rot_z'
area = 1.0
Ay = 0.0
Az = 0.0
Iy = 0.16
Iz = 0.16
y_orientation = '0.0 1.0 0.0'
large_strain = true
[../]
[./stress]
type = ComputeBeamResultants
block = 1
[../]
[]
[Postprocessors]
[./disp_x]
type = PointValue
point = '4.0 0.0 0.0'
variable = disp_x
[../]
[./disp_y]
type = PointValue
point = '4.0 0.0 0.0'
variable = disp_z
[../]
[./rot_z]
type = PointValue
point = '4.0 0.0 0.0'
variable = rot_y
[../]
[]
[Outputs]
exodus = true
perf_graph = true
[]
test/tests/auxkernels/solution_aux/solution_aux.i
[Mesh]
type = FileMesh
file = square.e
# This test uses SolutionUserObject which doesn't work with DistributedMesh.
parallel_type = replicated
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
[../]
[]
[AuxVariables]
[./u_aux]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[AuxKernels]
[./initial_cond_aux]
type = SolutionAux
solution = xda_soln
execute_on = initial
variable = u_aux
[../]
[]
[UserObjects]
[./xda_soln]
type = SolutionUserObject
mesh = build_out_0001_mesh.xda
es = build_out_0001.xda
system_variables = u
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = 1
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = 2
value = 1
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
nl_rel_tol = 1e-10
[]
[Outputs]
exodus = true
[./xda]
type = XDA
[../]
[]
test/tests/misc/no_exodiff_map/no_exodiff_map.i
[Mesh]
type = FileMesh
file = double_square.e
parallel_type = replicated
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./left1]
type = DirichletBC
variable = u
boundary = 1
value = 1
[../]
[./right1]
type = DirichletBC
variable = u
boundary = 2
value = 2
[../]
[./left2]
type = DirichletBC
variable = u
boundary = 3
value = 3
[../]
[./right2]
type = DirichletBC
variable = u
boundary = 4
value = 4
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
test/tests/mesh_modifiers/smooth_mesh/mesh_smoother.i
[Mesh]
type = FileMesh
file = concentric_circle_mesh_in.e
[]
[Variables]
[u]
[]
[]
[Kernels]
[diff]
type = Diffusion
variable = u
[]
[]
[BCs]
[left]
type = DirichletBC
variable = u
boundary = 'left'
value = 0
[]
[right]
type = DirichletBC
variable = u
boundary = 'right'
value = 1
[]
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
[MeshModifiers]
[smooth]
type = SmoothMesh
iterations = 5
[]
[]
modules/richards/test/tests/dirac/bh_fu_08.i
#fullyupwind
[Mesh]
type = FileMesh
file = bh07_input.e
[]
[GlobalParams]
richardsVarNames_UO = PPNames
density_UO = DensityConstBulk
relperm_UO = RelPermPower
sat_UO = Saturation
seff_UO = Seff1VG
SUPG_UO = SUPGstandard
[]
[Functions]
[./dts]
type = PiecewiseLinear
y = '1000 10000'
x = '100 1000'
[../]
[]
[UserObjects]
[./PPNames]
type = RichardsVarNames
richards_vars = pressure
[../]
[./DensityConstBulk]
type = RichardsDensityConstBulk
dens0 = 1000
bulk_mod = 2E9
[../]
[./Seff1VG]
type = RichardsSeff1VG
m = 0.8
al = 1E-5
[../]
[./RelPermPower]
type = RichardsRelPermPower
simm = 0.0
n = 2
[../]
[./Saturation]
type = RichardsSat
s_res = 0
sum_s_res = 0
[../]
[./SUPGstandard]
type = RichardsSUPGstandard
p_SUPG = 1E8
[../]
[./borehole_total_outflow_mass]
type = RichardsSumQuantity
[../]
[]
[Variables]
active = 'pressure'
[./pressure]
order = FIRST
family = LAGRANGE
[../]
[]
[ICs]
[./p_ic]
type = FunctionIC
variable = pressure
function = initial_pressure
[../]
[]
[BCs]
[./fix_outer]
type = DirichletBC
boundary = perimeter
variable = pressure
value = 1E7
[../]
[]
[AuxVariables]
[./Seff1VG_Aux]
[../]
[]
[Kernels]
active = 'richardsf richardst'
[./richardst]
type = RichardsMassChange
variable = pressure
[../]
[./richardsf]
type = RichardsFullyUpwindFlux
variable = pressure
[../]
[]
[DiracKernels]
[./bh]
type = RichardsBorehole
bottom_pressure = 0
point_file = bh08.bh
borehole_length = 1
borehole_direction = '0 0 1'
SumQuantityUO = borehole_total_outflow_mass
variable = pressure
unit_weight = '0 0 0'
re_constant = 0.1594
character = 2
fully_upwind = true
[../]
[]
[Postprocessors]
[./bh_report]
type = RichardsPlotQuantity
uo = borehole_total_outflow_mass
execute_on = 'initial timestep_end'
[../]
[./fluid_mass]
type = RichardsMass
variable = pressure
execute_on = 'initial timestep_end'
[../]
[]
[Functions]
[./initial_pressure]
type = ParsedFunction
value = 1E7
[../]
[]
[Materials]
[./all]
type = RichardsMaterial
block = 1
viscosity = 1E-3
mat_porosity = 0.1
mat_permeability = '1E-11 0 0 0 1E-11 0 0 0 1E-11'
gravity = '0 0 0'
linear_shape_fcns = true
[../]
[]
[AuxKernels]
[./Seff1VG_AuxK]
type = RichardsSeffAux
variable = Seff1VG_Aux
seff_UO = Seff1VG
pressure_vars = pressure
[../]
[]
[Preconditioning]
[./usual]
type = SMP
full = true
petsc_options = '-snes_converged_reason'
petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
[../]
[]
[Executioner]
type = Transient
end_time = 1000
solve_type = NEWTON
[./TimeStepper]
# get only marginally better results for smaller time steps
type = FunctionDT
function = dts
[../]
[]
[Outputs]
file_base = bh_fu_08
execute_on = 'initial timestep_end final'
interval = 10000
exodus = true
[]
modules/chemical_reactions/test/tests/desorption/langmuir_lumping_problem.i
# exploring CONSTANT MONOMIAL
[Mesh]
type = FileMesh
file = three_eles.e
[]
[Variables]
[./pressure]
# try with and without the CONSTANT MONOMIAL to see that
# CONSTANT MONOMIAL yields the correct result that pressure(x=0) is unchanged
# but LINEAR LAGRANGE changes pressure(x=0) since pressure is not lumped at x=0
# (the x=0 eqn is a*dot(p0)+b*dot(p10)=0, and x=10 eqn a*dot(p10)+b*dot(p20)=desorption,
# and since dot(p10)>0, we get dot(p0)<0)
family = MONOMIAL
order = CONSTANT
[../]
[./conc]
family = MONOMIAL
order = CONSTANT
block = centre_block
[../]
[]
[ICs]
[./p_ic]
type = ConstantIC
variable = pressure
value = 1.0
[../]
[./conc_ic]
type = ConstantIC
variable = conc
value = 1.0
block = centre_block
[../]
[]
[Kernels]
[./c_dot]
type = TimeDerivative
block = centre_block
variable = conc
[../]
[./flow_from_matrix]
type = DesorptionFromMatrix
block = centre_block
variable = conc
pressure_var = pressure
[../]
[./rho_dot]
type = TimeDerivative
variable = pressure
[../]
[./flux_to_porespace]
type = DesorptionToPorespace
block = centre_block
variable = pressure
conc_var = conc
[../]
[]
[Materials]
[./rock]
type = GenericConstantMaterial
block = 'left_block centre_block right_block'
[../]
[./lang_stuff]
type = LangmuirMaterial
block = centre_block
mat_desorption_time_const = 0.1
mat_adsorption_time_const = 0.1
mat_langmuir_density = 1
mat_langmuir_pressure = 1
pressure_var = pressure
[../]
[]
[Preconditioning]
[./andy]
type = SMP
full = true
#petsc_options = '-snes_test_display'
petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
[../]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1
[]
[Outputs]
file_base = langmuir_lumping_problem
exodus = true
[]
test/tests/outputs/oversample/over_sampling_second_file.i
[Mesh]
type = FileMesh
# Read in and work with a second order mesh
file = wedge18_mesh.e
# If we have an oversample mesh file, we haven not yet implemented
# synchronization of its partitioning with the problem mesh, so we
# need to keep the problem mesh replicated.
parallel_type = replicated
[]
[Functions]
[./exact_fn]
type = ParsedFunction
value = t*((x*x)+(y*y))
[../]
[./forcing_fn]
type = ParsedFunction
value = -4+(x*x+y*y)
[../]
[]
[Variables]
active = 'u'
[./u]
[../]
[]
[Kernels]
active = 'ie diff ffn'
[./ie]
type = TimeDerivative
variable = u
[../]
[./diff]
type = Diffusion
variable = u
[../]
[./ffn]
type = BodyForce
variable = u
function = forcing_fn
[../]
[]
[BCs]
[./all]
type = FunctionDirichletBC
variable = u
boundary = '1 2 4'
function = exact_fn
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
dt = 0.2
start_time = 0
num_steps = 3
[]
[Outputs]
file_base = out_wedge
[./oversample]
type = Exodus
file_base = out_wedge_oversample
file = wedge6_mesh.e
[../]
[]
test/tests/postprocessors/nodal_pps/nodal_extreme_pps_test.i
[Mesh]
type = FileMesh
file = trapezoid.e
uniform_refine = 1
# This test will not work in parallel with DistributedMesh enabled
# due to a bug in PeriodicBCs.
parallel_type = replicated
[]
[Functions]
[./tr_x]
type = ParsedFunction
value = -x*cos(pi/3)
[../]
[./tr_y]
type = ParsedFunction
value = x*sin(pi/3)
[../]
[./itr_x]
type = ParsedFunction
value = -x/cos(pi/3)
[../]
[./itr_y]
type = ParsedFunction
value = 0
[../]
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[./forcing]
type = GaussContForcing
variable = u
x_center = 2
y_center = -1
x_spread = 0.25
y_spread = 0.5
[../]
[./dot]
type = TimeDerivative
variable = u
[../]
[]
[BCs]
# active = ' '
[./Periodic]
[./x]
primary = 1
secondary = 4
transform_func = 'tr_x tr_y'
inv_transform_func = 'itr_x itr_y'
[../]
[../]
[]
[Postprocessors]
[./max_nodal_pps]
type = NodalExtremeValue
variable = u
[../]
[./max_node_id]
type = NodalProxyMaxValue
variable = u
[../]
[./min_nodal_pps]
type = NodalExtremeValue
variable = u
value_type = min
[../]
[]
[Executioner]
type = Transient
dt = 0.5
num_steps = 6
[]
[Outputs]
execute_on = 'timestep_end'
exodus = true
[]
test/tests/mesh_modifiers/sidesets_around_subdomain/around.i
[Mesh]
type = FileMesh
file = twoblocks.e
[]
[MeshModifiers]
[./block_1]
type = SideSetsAroundSubdomain
block = 'left'
new_boundary = 'hull_1'
[../]
[./block_2]
type = SideSetsAroundSubdomain
block = 'right'
new_boundary = 'hull_2'
[../]
[]
# This input file is intended to be run with the "--mesh-only" option so
# no other sections are required
modules/misc/test/tests/fracture_flow/single_quick.i
# Models fluid advecting down a single fracture sitting at x=0, and 0<=y<=3.
#
[Mesh]
type = FileMesh
file = 'single.e'
[]
[Variables]
[./u]
[../]
[]
[ICs]
[./u_init]
type = ConstantIC
variable = u
value = 0
[../]
[]
[BCs]
[./inj]
type = PresetBC
boundary = 1
variable = u
value = 1
[../]
[]
[Kernels]
[./matrix_dt]
type = CoefTimeDerivative
variable = u
Coefficient = 0.2 # matrix porosity
block = 1
[../]
[./matrix_diff]
type = AnisotropicDiffusion
variable = u
block = 1
tensor_coeff = '0.002 0 0 0 0 0 0 0 0' # matrix porosity * matrix diffusivity
[../]
[./fracture_dt]
# in misc
type = CoefTimeDerivative
variable = u
Coefficient = 0.1 # fracture half-aperture * fracture porosity
block = 2
[../]
[./fracture_advect]
type = Convection
variable = u
block = 2
x = 0
y = 0.08 # fracture half-aperture * velocity in fracture
z = 0
[../]
[]
[Preconditioning]
[./standard]
type = SMP
full = true
petsc_options = ''
petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
petsc_options_value = 'bcgs bjacobi 1E-13 1E-20 10000'
[../]
[]
[Executioner]
type = Transient
dt = 0.1
end_time = 1.0
solve_type = Newton
petsc_options = '-snes_converged_reason'
[]
[Outputs]
file_base = single_quick_out
execute_on = 'initial timestep_end final'
interval = 1000000
exodus = true
[./console]
type = Console
interval = 1
[../]
[]
test/tests/mesh/patterned_mesh/mesh_tester.i
[Mesh]
type = FileMesh
file = patterned_mesh_in.e
dim = 2
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = MatCoefDiffusion
variable = u
conductivity = conductivity
[../]
[]
[BCs]
[./top]
type = DirichletBC
variable = u
boundary = 3
value = 1
[../]
[./bottom]
type = DirichletBC
variable = u
boundary = 1
value = 0
[../]
[]
[Materials]
[./mat1]
type = GenericConstantMaterial
block = 1
prop_names = conductivity
prop_values = 100
[../]
[./mat2]
type = GenericConstantMaterial
block = 2
prop_names = conductivity
prop_values = 1e-4
[../]
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
modules/tensor_mechanics/test/tests/stress_recovery/stress_concentration/stress_concentration.i
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Mesh]
type = FileMesh
file = geo.msh
[]
[Variables]
[disp_x]
[]
[disp_y]
[]
[]
[AuxVariables]
[stress_xx]
order = CONSTANT
family = MONOMIAL
[]
[stress_yy]
order = CONSTANT
family = MONOMIAL
[]
[stress_xx_recovered]
[]
[stress_yy_recovered]
[]
[]
[AuxKernels]
[stress_xx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xx
index_i = 0
index_j = 0
execute_on = 'timestep_end'
[]
[stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
execute_on = 'timestep_end'
[]
[stress_xx_recovered]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xx_recovered
patch_polynomial_order = SECOND
index_i = 0
index_j = 0
execute_on = 'timestep_end'
[]
[stress_yy_recovered]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy_recovered
patch_polynomial_order = SECOND
index_i = 1
index_j = 1
execute_on = 'timestep_end'
[]
[]
[Kernels]
[solid_x]
type = StressDivergenceTensors
variable = disp_x
component = 0
[]
[solid_y]
type = StressDivergenceTensors
variable = disp_y
component = 1
[]
[]
[Materials]
[strain]
type = ComputeSmallStrain
[]
[Cijkl]
type = ComputeIsotropicElasticityTensor
poissons_ratio = 0.3
youngs_modulus = 2.1e+5
[]
[stress]
type = ComputeLinearElasticStress
[]
[]
[BCs]
[top_xdisp]
type = FunctionPresetBC
variable = disp_y
boundary = 'top'
function = 0
[]
[top_ydisp]
type = FunctionPresetBC
variable = disp_y
boundary = 'top'
function = 0.01
[]
[bottom_xdisp]
type = FunctionPresetBC
variable = disp_x
boundary = 'bottom'
function = 0
[]
[bottom_ydisp]
type = FunctionPresetBC
variable = disp_y
boundary = 'bottom'
function = 0
[]
[]
[Preconditioning]
[smp]
type = SMP
full = true
ksp_norm = default
[]
[]
[Executioner]
type = Steady
solve_type = NEWTON
petsc_options_iname = '-ksp_type -pc_type'
petsc_options_value = 'preonly lu'
nl_rel_tol = 1e-14
l_max_its = 100
nl_max_its = 30
[]
[Outputs]
interval = 1
exodus = true
print_linear_residuals = false
[]
test/tests/misc/check_error/nodal_value_off_block.i
[Mesh]
type = FileMesh
file = rectangle.e
dim = 2
# This test can only be run with renumering disabled, so the
# NodalVariableValue postprocessor's node id is well-defined.
allow_renumbering = false
[]
[Variables]
[./u]
block = '1 2'
[../]
[./v]
block = 2
[../]
[]
[Kernels]
[./diff]
type = BlkResTestDiffusion
variable = u
block = '1 2'
[../]
[./v_diff]
type = Diffusion
variable = v
block = 2
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = 1
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = 2
value = 1
[../]
[]
[Materials]
[./mat0]
type = GenericConstantMaterial
block = 1
prop_names = 'a b'
prop_values = '1 2'
[../]
[./mat1]
type = GenericConstantMaterial
block = 2
prop_names = a
prop_values = 10
[../]
[]
[Postprocessors]
[./off_block]
type = NodalVariableValue
variable = v
nodeid = 0
[../]
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
modules/tensor_mechanics/test/tests/truss/truss_hex.i
# This test is designed to check
# whether truss element works well with other multi-dimensional element
# e.g. the hex element in this case, by assigning different brock number
# to different types of elements.
[Mesh]
type = FileMesh
file = truss_hex.e
displacements = 'disp_x disp_y disp_z'
[]
[Variables]
[./disp_x]
order = FIRST
family = LAGRANGE
[../]
[./disp_y]
order = FIRST
family = LAGRANGE
[../]
[./disp_z]
order = FIRST
family = LAGRANGE
[../]
[]
[AuxVariables]
[./axial_stress]
order = CONSTANT
family = MONOMIAL
[../]
[./e_over_l]
order = CONSTANT
family = MONOMIAL
[../]
[./area]
order = CONSTANT
family = MONOMIAL
# initial_condition = 1.0
[../]
[./react_x]
order = FIRST
family = LAGRANGE
[../]
[./react_y]
order = FIRST
family = LAGRANGE
[../]
[./react_z]
order = FIRST
family = LAGRANGE
[../]
[]
[Functions]
[./x2]
type = PiecewiseLinear
x = '0 1 2 3'
y = '0 .5 1 1'
[../]
[./y2]
type = PiecewiseLinear
x = '0 1 2 3'
y = '0 0 .5 1'
[../]
[]
[BCs]
[./fixx1]
type = DirichletBC
variable = disp_x
boundary = 1
value = 0.0
[../]
[./fixy1]
type = DirichletBC
variable = disp_y
boundary = 1
value = 0
[../]
[./fixz1]
type = DirichletBC
variable = disp_z
boundary = 1
value = 0
[../]
[./fixx2]
type = DirichletBC
variable = disp_x
boundary = 2
value = 0
[../]
[./fixz2]
type = DirichletBC
variable = disp_z
boundary = 2
value = 0
[../]
[./fixDummyHex_x]
type = DirichletBC
variable = disp_x
boundary = 1000
value = 0
[../]
[./fixDummyHex_y]
type = DirichletBC
variable = disp_y
boundary = 1000
value = 0
[../]
[./fixDummyHex_z]
type = DirichletBC
variable = disp_z
boundary = 1000
value = 0
[../]
[]
[DiracKernels]
[./pull]
type = ConstantPointSource
value = -25
point = '0 -2 0'
variable = disp_y
[../]
[]
[AuxKernels]
[./axial_stress]
type = MaterialRealAux
block = '1 2'
property = axial_stress
variable = axial_stress
[../]
[./e_over_l]
type = MaterialRealAux
block = '1 2'
property = e_over_l
variable = e_over_l
[../]
[./area1]
type = ConstantAux
block = 1
variable = area
value = 1.0
execute_on = 'initial timestep_begin'
[../]
[./area2]
type = ConstantAux
block = 2
variable = area
value = 0.25
execute_on = 'initial timestep_begin'
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
solve_type = PJFNK
petsc_options_iname = '-pc_type -ksp_gmres_restart'
petsc_options_value = 'jacobi 101'
nl_max_its = 15
nl_rel_tol = 1e-8
nl_abs_tol = 1e-10
dt = 1
num_steps = 1
end_time = 1
[]
[Kernels]
[./truss_x]
type = StressDivergenceTensorsTruss
block = '1 2'
variable = disp_x
displacements = 'disp_x disp_y disp_z'
component = 0
area = area
save_in = react_x
[../]
[./truss_y]
type = StressDivergenceTensorsTruss
block = '1 2'
variable = disp_y
component = 1
displacements = 'disp_x disp_y disp_z'
area = area
save_in = react_y
[../]
[./truss_z]
type = StressDivergenceTensorsTruss
block = '1 2'
variable = disp_z
component = 2
displacements = 'disp_x disp_y disp_z'
area = area
save_in = react_z
[../]
[./TensorMechanics]
block = 1000
displacements = 'disp_x disp_y disp_z'
[../]
# [./hex_x]
# type = StressDivergenceTensors
# block = 1000
# variable = disp_x
# component = 0
# displacements = 'disp_x disp_y disp_z'
# [../]
# [./hex_y]
# type = StressDivergenceTensors
# block = 1000
# variable = disp_y
# component = 1
# displacements = 'disp_x disp_y disp_z'
# [../]
# [./hex_z]
# type = StressDivergenceTensors
# block = 1000
# variable = disp_z
# component = 2
# displacements = 'disp_x disp_y disp_z'
# [../]
[]
[Materials]
[./elasticity_tensor]
type = ComputeIsotropicElasticityTensor
block = 1000
youngs_modulus = 1e6
poissons_ratio = 0
[../]
[./strain]
type = ComputeSmallStrain
block = 1000
displacements = 'disp_x disp_y disp_z'
[../]
[./stress]
type = ComputeLinearElasticStress
block = 1000
[../]
[./linelast]
type = LinearElasticTruss
block = '1 2'
displacements = 'disp_x disp_y disp_z'
youngs_modulus = 1e6
[../]
[]
[Outputs]
exodus = true
[]
test/tests/bcs/periodic/auto_dir_repeated_id.i
[Mesh]
type = FileMesh
file = auto_dir_repeated_id.e
dim = 3
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./dot]
type = TimeDerivative
variable = u
[../]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./z_all]
type = FunctionDirichletBC
variable = u
boundary = 'z_all'
function = 'z'
[../]
[./Periodic]
[./all]
variable = u
auto_direction = 'x y'
[../]
[../]
[]
[Executioner]
type = Transient
dt = .1
num_steps = 1
solve_type = NEWTON
[]
[Outputs]
execute_on = 'timestep_end'
exodus = true
[]
modules/tensor_mechanics/test/tests/radial_disp_aux/sphere_2d_axisymmetric.i
# The purpose of this set of tests is to check the values computed
# by the RadialDisplacementAux AuxKernel. They should match the
# radial component of the displacment for a cylindrical or spherical
# model.
# This particular model is of a sphere subjected to uniform thermal
# expansion represented using a 2D axisymmetric model.
[Mesh]
type = FileMesh
file = circle_sector_2d.e
[]
[GlobalParams]
displacements = 'disp_x disp_y'
order = SECOND
family = LAGRANGE
[]
[Problem]
coord_type = RZ
[]
[AuxVariables]
[./temp]
[../]
[./rad_disp]
[../]
[]
[Functions]
[./temperature_load]
type = ParsedFunction
value = t+300.0
[../]
[]
[Modules/TensorMechanics/Master]
[./all]
strain = FINITE
add_variables = true
eigenstrain_names = eigenstrain
[../]
[]
[AuxKernels]
[./tempfuncaux]
type = FunctionAux
variable = temp
function = temperature_load
use_displaced_mesh = false
[../]
[./raddispaux]
type = RadialDisplacementSphereAux
variable = rad_disp
origin = '0 0 0'
[../]
[]
[BCs]
[./x]
type = DirichletBC
variable = disp_x
boundary = 1
value = 0.0
[../]
[./y]
type = DirichletBC
variable = disp_y
boundary = 2
value = 0.0
[../]
[]
[Materials]
[./elasticity_tensor]
type = ComputeIsotropicElasticityTensor
youngs_modulus = 2.1e5
poissons_ratio = 0.3
[../]
[./small_stress]
type = ComputeFiniteStrainElasticStress
[../]
[./thermal_expansion]
type = ComputeThermalExpansionEigenstrain
stress_free_temperature = 300
thermal_expansion_coeff = 1.3e-5
temperature = temp
eigenstrain_name = eigenstrain
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options = '-snes_ksp_ew'
petsc_options_iname = '-ksp_gmres_restart'
petsc_options_value = '51'
line_search = 'none'
l_max_its = 50
nl_max_its = 50
nl_rel_tol = 1e-10
nl_abs_tol = 1e-10
start_time = 0.0
end_time = 1
dt = 1
dtmin = 1
[]
[Outputs]
csv = true
exodus = true
[]
#[Postprocessors]
# [./strain_xx]
# type = SideAverageValue
# variable =
# block = 0
# [../]
#[]
test/tests/geomsearch/quadrature_penetration_locator/1d_quadrature_penetration.i
[Mesh]
type = FileMesh
file = 1d_penetration.e
construct_side_list_from_node_list = true
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
[../]
[]
[AuxVariables]
[./penetration]
order = CONSTANT
family = MONOMIAL
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[AuxKernels]
[./penetration]
type = PenetrationAux
variable = penetration
boundary = 2
paired_boundary = 3
[../]
[]
[BCs]
[./block1_left]
type = DirichletBC
variable = u
boundary = 1
value = 0
[../]
[./block1_right]
type = DirichletBC
variable = u
boundary = 2
value = 1
[../]
[./block2_left]
type = DirichletBC
variable = u
boundary = 3
value = 0
[../]
[./block2_right]
type = DirichletBC
variable = u
boundary = 4
value = 1
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
[]
[Outputs]
exodus = true
[]
test/tests/geomsearch/patch_update_strategy/never.i
[Mesh]
type = FileMesh
file = long_range.e
dim = 2
patch_update_strategy = never
displacements = 'disp_x disp_y'
[]
[Variables]
[./u]
block = right
[../]
[]
[AuxVariables]
[./linear_field]
[../]
[./receiver]
# The field to transfer into
[../]
[./disp_x]
[../]
[./disp_y]
[../]
[./elemental_reciever]
order = CONSTANT
family = MONOMIAL
[../]
[]
[Kernels]
[./diff]
type = CoefDiffusion
variable = u
coef = 1
[../]
[./time]
type = TimeDerivative
variable = u
[../]
[]
[AuxKernels]
[./linear_in_y]
# This just gives us something to transfer that varies in y so we can ensure the transfer is working properly...
type = FunctionAux
variable = linear_field
function = y
execute_on = initial
[../]
[./right_to_left]
type = GapValueAux
variable = receiver
paired_variable = linear_field
paired_boundary = rightleft
execute_on = timestep_end
boundary = leftright
[../]
[./y_displacement]
type = FunctionAux
variable = disp_y
function = t
execute_on = 'linear timestep_begin'
block = left
[../]
[./elemental_right_to_left]
type = GapValueAux
variable = elemental_reciever
paired_variable = linear_field
paired_boundary = rightleft
boundary = leftright
[../]
[]
[BCs]
[./top]
type = DirichletBC
variable = u
boundary = righttop
value = 1
[../]
[./bottom]
type = DirichletBC
variable = u
boundary = rightbottom
value = 0
[../]
[]
[Problem]
type = FEProblem
kernel_coverage_check = false
[]
[Executioner]
type = Transient
num_steps = 30
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
test/tests/restrictable/api_test/boundary_restrictable.i
[Mesh]
type = FileMesh
file = rectangle.e
dim = 2
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./left]
type = BndTestDirichletBC
variable = u
boundary = 1
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = 2
value = 1
[../]
[]
[Materials]
[./mat0]
type = GenericConstantMaterial
boundary = 1
prop_names = 'a'
prop_values = '1'
[../]
[./mat1]
type = GenericConstantMaterial
boundary = 2
prop_names = 'a b'
prop_values = '10 20'
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
test/tests/geomsearch/patch_update_strategy/auto.i
[Mesh]
type = FileMesh
file = long_range.e
dim = 2
patch_update_strategy = auto
displacements = 'disp_x disp_y'
[]
[Variables]
[./u]
block = right
[../]
[]
[AuxVariables]
[./linear_field]
[../]
[./receiver]
# The field to transfer into
[../]
[./disp_x]
[../]
[./disp_y]
[../]
[./elemental_reciever]
order = CONSTANT
family = MONOMIAL
[../]
[]
[Kernels]
[./diff]
type = CoefDiffusion
variable = u
coef = 1
[../]
[./time]
type = TimeDerivative
variable = u
[../]
[]
[AuxKernels]
[./linear_in_y]
# This just gives us something to transfer that varies in y so we can ensure the transfer is working properly...
type = FunctionAux
variable = linear_field
function = y
execute_on = initial
[../]
[./right_to_left]
type = GapValueAux
variable = receiver
paired_variable = linear_field
paired_boundary = rightleft
execute_on = timestep_end
boundary = leftright
[../]
[./y_displacement]
type = FunctionAux
variable = disp_y
function = t
execute_on = 'linear timestep_begin'
block = left
[../]
[./elemental_right_to_left]
type = GapValueAux
variable = elemental_reciever
paired_variable = linear_field
paired_boundary = rightleft
boundary = leftright
[../]
[]
[BCs]
[./top]
type = DirichletBC
variable = u
boundary = righttop
value = 1
[../]
[./bottom]
type = DirichletBC
variable = u
boundary = rightbottom
value = 0
[../]
[]
[Problem]
type = FEProblem
kernel_coverage_check = false
[]
[Executioner]
type = Transient
num_steps = 30
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
test/tests/auxkernels/solution_aux/build.i
[Mesh]
type = FileMesh
file = square.e
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = 1
value = 2
[../]
[./right]
type = DirichletBC
variable = u
boundary = 2
value = 3
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
nl_rel_tol = 1e-10
[]
[Outputs]
exodus = true
xda = true
[]
modules/combined/test/tests/poro_mechanics/borehole_lowres.i
# Poroelastic response of a borehole.
#
# LOWRES VERSION: this version does not give perfect agreement with the analytical solution
#
# A fully-saturated medium contains a fluid with a homogeneous porepressure,
# but an anisitropic insitu stress. A infinitely-long borehole aligned with
# the $$z$$ axis is instanteously excavated. The borehole boundary is
# stress-free and allowed to freely drain. This problem is analysed using
# plane-strain conditions (no $$z$$ displacement).
#
# The solution in Laplace space is found in E Detournay and AHD Cheng "Poroelastic response of a borehole in a non-hydrostatic stress field". International Journal of Rock Mechanics and Mining Sciences and Geomechanics Abstracts 25 (1988) 171-182. In the small-time limit, the Laplace transforms may be performed. There is one typo in the paper. Equation (A4)'s final term should be -(a/r)\sqrt(4ct/(a^2\pi)), and not +(a/r)\sqrt(4ct/(a^2\pi)).
#
# Because realistic parameters are chosen (below),
# the residual for porepressure is much smaller than
# the residuals for the displacements. Therefore the
# scaling parameter is chosen. Also note that the
# insitu stresses are effective stresses, not total
# stresses, but the solution in the above paper is
# expressed in terms of total stresses.
#
# Here are the problem's parameters, and their values:
# Borehole radius. a = 1
# Rock's Lame lambda. la = 0.5E9
# Rock's Lame mu, which is also the Rock's shear modulus. mu = G = 1.5E9
# Rock bulk modulus. K = la + 2*mu/3 = 1.5E9
# Drained Poisson ratio. nu = (3K - 2G)/(6K + 2G) = 0.125
# Rock bulk compliance. 1/K = 0.66666666E-9
# Fluid bulk modulus. Kf = 0.7171315E9
# Fluid bulk compliance. 1/Kf = 1.39444444E-9
# Rock initial porosity. phi0 = 0.3
# Biot coefficient. alpha = 0.65
# Biot modulus. M = 1/(phi0/Kf + (alpha - phi0)(1 - alpha)/K) = 2E9
# Undrained bulk modulus. Ku = K + alpha^2*M = 2.345E9
# Undrained Poisson ratio. nuu = (3Ku - 2G)/(6Ku + 2G) = 0.2364
# Skempton coefficient. B = alpha*M/Ku = 0.554
# Fluid mobility (rock permeability/fluid viscosity). k = 1E-12
[Mesh]
type = FileMesh
file = borehole_lowres_input.e
[]
[GlobalParams]
displacements = 'disp_x disp_y disp_z'
porepressure = porepressure
block = 1
[]
[GlobalParams]
volumetric_locking_correction=true
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[./disp_z]
[../]
[./porepressure]
scaling = 1E9 # Notice the scaling, to make porepressure's kernels roughly of same magnitude as disp's kernels
[../]
[]
[ICs]
[./initial_p]
type = ConstantIC
variable = porepressure
value = 1E6
[../]
[]
[BCs]
[./fixed_outer_x]
type = PresetBC
variable = disp_x
value = 0
boundary = outer
[../]
[./fixed_outer_y]
type = PresetBC
variable = disp_y
value = 0
boundary = outer
[../]
[./plane_strain]
type = PresetBC
variable = disp_z
value = 0
boundary = 'zmin zmax'
[../]
[./borehole_wall]
type = DirichletBC
variable = porepressure
value = 0
boundary = bh_wall
[../]
[]
[AuxVariables]
[./stress_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./tot_yy]
order = CONSTANT
family = MONOMIAL
[../]
[]
[AuxKernels]
[./stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
[../]
[./tot_yy]
type = ParsedAux
args = 'stress_yy porepressure'
execute_on = timestep_end
variable = tot_yy
function = 'stress_yy-0.65*porepressure'
[../]
[]
[Kernels]
[./grad_stress_x]
type = StressDivergenceTensors
variable = disp_x
component = 0
[../]
[./grad_stress_y]
type = StressDivergenceTensors
variable = disp_y
component = 1
[../]
[./grad_stress_z]
type = StressDivergenceTensors
variable = disp_z
component = 2
[../]
[./poro_x]
type = PoroMechanicsCoupling
variable = disp_x
component = 0
[../]
[./poro_y]
type = PoroMechanicsCoupling
variable = disp_y
component = 1
[../]
[./poro_z]
type = PoroMechanicsCoupling
variable = disp_z
component = 2
[../]
[./poro_timederiv]
type = PoroFullSatTimeDerivative
variable = porepressure
[../]
[./darcy_flow]
type = CoefDiffusion
variable = porepressure
coef = 1E-12
[../]
[]
[Materials]
[./elasticity_tensor]
type = ComputeElasticityTensor
C_ijkl = '0.5E9 1.5E9'
# bulk modulus is lambda + 2*mu/3 = 0.5 + 2*1.5/3 = 1.5E9
fill_method = symmetric_isotropic
[../]
[./strain]
type = ComputeFiniteStrain
displacements = 'disp_x disp_y disp_z'
eigenstrain_names = ini_stress
[../]
[./ini_stress]
type = ComputeEigenstrainFromInitialStress
initial_stress = '-1.35E6 0 0 0 -3.35E6 0 0 0 0' # remember this is the effective stress
eigenstrain_name = ini_stress
[../]
[./no_plasticity]
type = ComputeFiniteStrainElasticStress
[../]
[./poro_material]
type = PoroFullSatMaterial
porosity0 = 0.3
biot_coefficient = 0.65
solid_bulk_compliance = 0.6666666666667E-9
fluid_bulk_compliance = 1.3944444444444E-9
constant_porosity = false
[../]
[]
[Postprocessors]
[./p00]
type = PointValue
variable = porepressure
point = '1.00 0 0'
outputs = csv_p
[../]
[./p01]
type = PointValue
variable = porepressure
point = '1.01 0 0'
outputs = csv_p
[../]
[./p02]
type = PointValue
variable = porepressure
point = '1.02 0 0'
outputs = csv_p
[../]
[./p03]
type = PointValue
variable = porepressure
point = '1.03 0 0'
outputs = csv_p
[../]
[./p04]
type = PointValue
variable = porepressure
point = '1.04 0 0'
outputs = csv_p
[../]
[./p05]
type = PointValue
variable = porepressure
point = '1.05 0 0'
outputs = csv_p
[../]
[./p06]
type = PointValue
variable = porepressure
point = '1.06 0 0'
outputs = csv_p
[../]
[./p07]
type = PointValue
variable = porepressure
point = '1.07 0 0'
outputs = csv_p
[../]
[./p08]
type = PointValue
variable = porepressure
point = '1.08 0 0'
outputs = csv_p
[../]
[./p09]
type = PointValue
variable = porepressure
point = '1.09 0 0'
outputs = csv_p
[../]
[./p10]
type = PointValue
variable = porepressure
point = '1.10 0 0'
outputs = csv_p
[../]
[./p11]
type = PointValue
variable = porepressure
point = '1.11 0 0'
outputs = csv_p
[../]
[./p12]
type = PointValue
variable = porepressure
point = '1.12 0 0'
outputs = csv_p
[../]
[./p13]
type = PointValue
variable = porepressure
point = '1.13 0 0'
outputs = csv_p
[../]
[./p14]
type = PointValue
variable = porepressure
point = '1.14 0 0'
outputs = csv_p
[../]
[./p15]
type = PointValue
variable = porepressure
point = '1.15 0 0'
outputs = csv_p
[../]
[./p16]
type = PointValue
variable = porepressure
point = '1.16 0 0'
outputs = csv_p
[../]
[./p17]
type = PointValue
variable = porepressure
point = '1.17 0 0'
outputs = csv_p
[../]
[./p18]
type = PointValue
variable = porepressure
point = '1.18 0 0'
outputs = csv_p
[../]
[./p19]
type = PointValue
variable = porepressure
point = '1.19 0 0'
outputs = csv_p
[../]
[./p20]
type = PointValue
variable = porepressure
point = '1.20 0 0'
outputs = csv_p
[../]
[./p21]
type = PointValue
variable = porepressure
point = '1.21 0 0'
outputs = csv_p
[../]
[./p22]
type = PointValue
variable = porepressure
point = '1.22 0 0'
outputs = csv_p
[../]
[./p23]
type = PointValue
variable = porepressure
point = '1.23 0 0'
outputs = csv_p
[../]
[./p24]
type = PointValue
variable = porepressure
point = '1.24 0 0'
outputs = csv_p
[../]
[./p25]
type = PointValue
variable = porepressure
point = '1.25 0 0'
outputs = csv_p
[../]
[./s00]
type = PointValue
variable = disp_x
point = '1.00 0 0'
outputs = csv_s
[../]
[./s01]
type = PointValue
variable = disp_x
point = '1.01 0 0'
outputs = csv_s
[../]
[./s02]
type = PointValue
variable = disp_x
point = '1.02 0 0'
outputs = csv_s
[../]
[./s03]
type = PointValue
variable = disp_x
point = '1.03 0 0'
outputs = csv_s
[../]
[./s04]
type = PointValue
variable = disp_x
point = '1.04 0 0'
outputs = csv_s
[../]
[./s05]
type = PointValue
variable = disp_x
point = '1.05 0 0'
outputs = csv_s
[../]
[./s06]
type = PointValue
variable = disp_x
point = '1.06 0 0'
outputs = csv_s
[../]
[./s07]
type = PointValue
variable = disp_x
point = '1.07 0 0'
outputs = csv_s
[../]
[./s08]
type = PointValue
variable = disp_x
point = '1.08 0 0'
outputs = csv_s
[../]
[./s09]
type = PointValue
variable = disp_x
point = '1.09 0 0'
outputs = csv_s
[../]
[./s10]
type = PointValue
variable = disp_x
point = '1.10 0 0'
outputs = csv_s
[../]
[./s11]
type = PointValue
variable = disp_x
point = '1.11 0 0'
outputs = csv_s
[../]
[./s12]
type = PointValue
variable = disp_x
point = '1.12 0 0'
outputs = csv_s
[../]
[./s13]
type = PointValue
variable = disp_x
point = '1.13 0 0'
outputs = csv_s
[../]
[./s14]
type = PointValue
variable = disp_x
point = '1.14 0 0'
outputs = csv_s
[../]
[./s15]
type = PointValue
variable = disp_x
point = '1.15 0 0'
outputs = csv_s
[../]
[./s16]
type = PointValue
variable = disp_x
point = '1.16 0 0'
outputs = csv_s
[../]
[./s17]
type = PointValue
variable = disp_x
point = '1.17 0 0'
outputs = csv_s
[../]
[./s18]
type = PointValue
variable = disp_x
point = '1.18 0 0'
outputs = csv_s
[../]
[./s19]
type = PointValue
variable = disp_x
point = '1.19 0 0'
outputs = csv_s
[../]
[./s20]
type = PointValue
variable = disp_x
point = '1.20 0 0'
outputs = csv_s
[../]
[./s21]
type = PointValue
variable = disp_x
point = '1.21 0 0'
outputs = csv_s
[../]
[./s22]
type = PointValue
variable = disp_x
point = '1.22 0 0'
outputs = csv_s
[../]
[./s23]
type = PointValue
variable = disp_x
point = '1.23 0 0'
outputs = csv_s
[../]
[./s24]
type = PointValue
variable = disp_x
point = '1.24 0 0'
outputs = csv_s
[../]
[./s25]
type = PointValue
variable = disp_x
point = '1.25 0 0'
outputs = csv_s
[../]
[./t00]
type = PointValue
variable = tot_yy
point = '1.00 0 0'
outputs = csv_t
[../]
[./t01]
type = PointValue
variable = tot_yy
point = '1.01 0 0'
outputs = csv_t
[../]
[./t02]
type = PointValue
variable = tot_yy
point = '1.02 0 0'
outputs = csv_t
[../]
[./t03]
type = PointValue
variable = tot_yy
point = '1.03 0 0'
outputs = csv_t
[../]
[./t04]
type = PointValue
variable = tot_yy
point = '1.04 0 0'
outputs = csv_t
[../]
[./t05]
type = PointValue
variable = tot_yy
point = '1.05 0 0'
outputs = csv_t
[../]
[./t06]
type = PointValue
variable = tot_yy
point = '1.06 0 0'
outputs = csv_t
[../]
[./t07]
type = PointValue
variable = tot_yy
point = '1.07 0 0'
outputs = csv_t
[../]
[./t08]
type = PointValue
variable = tot_yy
point = '1.08 0 0'
outputs = csv_t
[../]
[./t09]
type = PointValue
variable = tot_yy
point = '1.09 0 0'
outputs = csv_t
[../]
[./t10]
type = PointValue
variable = tot_yy
point = '1.10 0 0'
outputs = csv_t
[../]
[./t11]
type = PointValue
variable = tot_yy
point = '1.11 0 0'
outputs = csv_t
[../]
[./t12]
type = PointValue
variable = tot_yy
point = '1.12 0 0'
outputs = csv_t
[../]
[./t13]
type = PointValue
variable = tot_yy
point = '1.13 0 0'
outputs = csv_t
[../]
[./t14]
type = PointValue
variable = tot_yy
point = '1.14 0 0'
outputs = csv_t
[../]
[./t15]
type = PointValue
variable = tot_yy
point = '1.15 0 0'
outputs = csv_t
[../]
[./t16]
type = PointValue
variable = tot_yy
point = '1.16 0 0'
outputs = csv_t
[../]
[./t17]
type = PointValue
variable = tot_yy
point = '1.17 0 0'
outputs = csv_t
[../]
[./t18]
type = PointValue
variable = tot_yy
point = '1.18 0 0'
outputs = csv_t
[../]
[./t19]
type = PointValue
variable = tot_yy
point = '1.19 0 0'
outputs = csv_t
[../]
[./t20]
type = PointValue
variable = tot_yy
point = '1.20 0 0'
outputs = csv_t
[../]
[./t21]
type = PointValue
variable = tot_yy
point = '1.21 0 0'
outputs = csv_t
[../]
[./t22]
type = PointValue
variable = tot_yy
point = '1.22 0 0'
outputs = csv_t
[../]
[./t23]
type = PointValue
variable = tot_yy
point = '1.23 0 0'
outputs = csv_t
[../]
[./t24]
type = PointValue
variable = tot_yy
point = '1.24 0 0'
outputs = csv_t
[../]
[./t25]
type = PointValue
variable = tot_yy
point = '1.25 0 0'
outputs = csv_t
[../]
[./dt]
type = FunctionValuePostprocessor
outputs = console
function = 2*t
[../]
[]
[Preconditioning]
[./andy]
type = SMP
full = true
petsc_options = '-snes_monitor -snes_linesearch_monitor'
petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it -sub_pc_type -sub_pc_factor_shift_type'
petsc_options_value = 'gmres asm 1E0 1E-10 200 500 lu NONZERO'
[../]
[]
[Executioner]
type = Transient
solve_type = Newton
start_time = 0
end_time = 0.3
dt = 0.3
#[./TimeStepper]
# type = PostprocessorDT
# postprocessor = dt
# dt = 0.003
#[../]
[]
[Outputs]
execute_on = 'timestep_end'
file_base = borehole_lowres
exodus = true
sync_times = '0.003 0.3'
[./csv_p]
file_base = borehole_lowres_p
type = CSV
[../]
[./csv_s]
file_base = borehole_lowres_s
type = CSV
[../]
[./csv_t]
file_base = borehole_lowres_t
type = CSV
[../]
[]
modules/heat_conduction/test/tests/meshed_gap_thermal_contact/meshed_gap_thermal_contact.i
[Mesh]
type = FileMesh
file = meshed_gap.e
dim = 2
[]
[Variables]
[./temp]
block = '1 3'
initial_condition = 1.0
[../]
[]
[Kernels]
[./hc]
type = HeatConduction
variable = temp
block = '1 3'
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = temp
boundary = 1
value = 1
[../]
[./right]
type = DirichletBC
variable = temp
boundary = 4
value = 2
[../]
[]
[ThermalContact]
[./gap_conductivity]
type = GapHeatTransfer
variable = temp
master = 2
slave = 3
gap_conductivity = 0.5
[../]
[]
[Materials]
[./hcm]
type = HeatConductionMaterial
block = '1 3'
temp = temp
thermal_conductivity = 1
[../]
[]
[Problem]
type = FEProblem
kernel_coverage_check = false
material_coverage_check = false
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
[./out]
type = Exodus
[../]
[]
test/tests/restrictable/internal_side_user_object/internal_side_user_object.i
[Mesh]
type = FileMesh
file = rectangle.e
dim = 2
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = 1
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = 2
value = 1
[../]
[]
[Postprocessors]
[./all_pp]
type = NumInternalSides
execute_on = 'initial timestep_end'
[../]
[./block_1_pp]
type = NumInternalSides
block = 1
execute_on = 'initial timestep_end'
[../]
[./block_2_pp]
type = NumInternalSides
block = 2
execute_on = 'initial timestep_end'
[../]
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = false
csv = true
[]
test/tests/functions/solution_function/solution_function_exodus_test.i
# [Executioner]
# type = Steady
# petsc_options = '-snes'
# l_max_its = 800
# nl_rel_tol = 1e-10
# []
[Mesh]
type = FileMesh
file = cubesource.e
# This test uses SolutionUserObject which doesn't work with DistributedMesh.
parallel_type = replicated
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
initial_condition = 0.0
[../]
[]
[AuxVariables]
# [./ne]
# order = FIRST
# family = LAGRANGE
# [../]
# [./ee]
# order = CONSTANT
# family = MONOMIAL
# [../]
[./nn]
order = FIRST
family = LAGRANGE
[../]
[./en]
order = CONSTANT
family = MONOMIAL
[../]
[]
[Functions]
# [./sourcee]
# type = SolutionFunction
# file_type = exodusII
# mesh = cubesource.e
# variable = source_element
# [../]
[./sourcen]
type = SolutionFunction
scale_factor = 2.0
solution = cube_soln
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[AuxKernels]
# [./ne]
# type = FunctionAux
# variable = ne
# function = sourcee
# [../]
# [./ee]
# type = FunctionAux
# variable = ee
# function = sourcee
# [../]
[./nn]
type = FunctionAux
variable = nn
function = sourcen
[../]
[./en]
type = FunctionAux
variable = en
function = sourcen
[../]
[]
[BCs]
[./stuff]
type = DirichletBC
variable = u
boundary = '1 2'
value = 0.0
[../]
[]
[UserObjects]
[./cube_soln]
type = SolutionUserObject
timestep = 2
system_variables = source_nodal
mesh = cubesource.e
[../]
[]
[Executioner]
type = Transient
solve_type = 'NEWTON'
l_max_its = 800
nl_rel_tol = 1e-10
num_steps = 50
end_time = 5
dt = 0.5
[]
[Outputs]
execute_on = 'timestep_end'
exodus = true
[]
modules/tensor_mechanics/test/tests/pressure/pressure_test.i
#
# Pressure Test
#
# This test is designed to compute pressure loads on three faces of a unit cube.
#
# The mesh is composed of one block with a single element. Symmetry bcs are
# applied to the faces opposite the pressures. Poisson's ratio is zero,
# which makes it trivial to check displacements.
#
[Mesh]
type = FileMesh
file = pressure_test.e
displacements = 'disp_x disp_y disp_z'
[]
[Functions]
[./rampConstant]
type = PiecewiseLinear
x = '0. 1. 2.'
y = '0. 1. 1.'
scale_factor = 1.0
[../]
[./zeroRamp]
type = PiecewiseLinear
x = '0. 1. 2.'
y = '0. 0. 1.'
scale_factor = 2.0
[../]
[./rampUnramp]
type = PiecewiseLinear
x = '0. 1. 2.'
y = '0. 1. 0.'
scale_factor = 10.0
[../]
[]
[Variables]
[./disp_x]
order = FIRST
family = LAGRANGE
[../]
[./disp_y]
order = FIRST
family = LAGRANGE
[../]
[./disp_z]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./TensorMechanics]
displacements = 'disp_x disp_y disp_z'
[../]
[]
[BCs]
[./no_x]
type = DirichletBC
variable = disp_x
boundary = 4
value = 0.0
[../]
[./no_y]
type = DirichletBC
variable = disp_y
boundary = 5
value = 0.0
[../]
[./no_z]
type = DirichletBC
variable = disp_z
boundary = 6
value = 0.0
[../]
[./Pressure]
[./Side1]
boundary = 1
function = rampConstant
displacements = 'disp_x disp_y disp_z'
[../]
[./Side2]
boundary = 2
function = zeroRamp
displacements = 'disp_x disp_y disp_z'
[../]
[./Side3]
boundary = 3
function = rampUnramp
displacements = 'disp_x disp_y disp_z'
[../]
[../]
[]
[Materials]
[./Elasticity_tensor]
type = ComputeElasticityTensor
block = 1
fill_method = symmetric_isotropic
C_ijkl = '0 0.5e6'
[../]
[./strain]
type = ComputeSmallStrain
displacements = 'disp_x disp_y disp_z'
block = 1
[../]
[./stress]
type = ComputeLinearElasticStress
block = 1
[../]
[]
[Executioner]
type = Transient
solve_type = PJFNK
nl_abs_tol = 1e-10
l_max_its = 20
start_time = 0.0
dt = 1.0
num_steps = 2
end_time = 2.0
[]
[Outputs]
[./out]
type = Exodus
elemental_as_nodal = true
[../]
[]
test/tests/functions/solution_function/solution_function_test.i
[Mesh]
type = FileMesh
file = square.e
# This test uses SolutionUserObject which doesn't work with DistributedMesh.
parallel_type = replicated
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
[./InitialCondition]
type = FunctionIC
function = initial_cond_func
[../]
[../]
[]
[AuxVariables]
[./u_aux]
order = FIRST
family = LAGRANGE
[./InitialCondition]
type = FunctionIC
function = initial_cond_func
[../]
[../]
[]
[Functions]
[./initial_cond_func]
type = SolutionFunction
solution = ex_soln
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = 1
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = 2
value = 1
[../]
[]
[UserObjects]
[./ex_soln]
type = SolutionUserObject
system_variables = u
mesh = build_out_0001_mesh.xda
es = build_out_0001.xda
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
nl_rel_tol = 1e-10
[]
[Outputs]
file_base = out
exodus = true
[]
modules/richards/test/tests/theis/th22.i
# two-phase, fully-saturated
# production
[Mesh]
type = FileMesh
file = th02_input.e
[]
[GlobalParams]
richardsVarNames_UO = PPNames
[]
[Functions]
[./dts]
type = PiecewiseLinear
y = '1 2 4 20'
x = '0 1 10 100'
[../]
[]
[UserObjects]
[./PPNames]
type = RichardsVarNames
richards_vars = 'pwater pgas'
[../]
[./DensityWater]
type = RichardsDensityConstBulk
dens0 = 1000
bulk_mod = 2E9
[../]
[./DensityGas]
type = RichardsDensityConstBulk
dens0 = 1
bulk_mod = 2E6
[../]
[./SeffWater]
type = RichardsSeff2waterVG
m = 0.8
al = 1E-5
[../]
[./SeffGas]
type = RichardsSeff2gasVG
m = 0.8
al = 1E-5
[../]
[./RelPermWater]
type = RichardsRelPermPower
simm = 0.0
n = 2
[../]
[./RelPermGas]
type = RichardsRelPermPower
simm = 0.0
n = 3
[../]
[./SatWater]
type = RichardsSat
s_res = 0.0
sum_s_res = 0.0
[../]
[./SatGas]
type = RichardsSat
s_res = 0.0
sum_s_res = 0.0
[../]
[./SUPGwater]
type = RichardsSUPGstandard
p_SUPG = 1E-5
[../]
[./SUPGgas]
type = RichardsSUPGstandard
p_SUPG = 1E-5
[../]
[./total_outflow_mass]
type = RichardsSumQuantity
[../]
[]
[Variables]
[./pwater]
order = FIRST
family = LAGRANGE
[../]
[./pgas]
order = FIRST
family = LAGRANGE
[../]
[]
[ICs]
[./water_ic]
type = FunctionIC
variable = pwater
function = initial_pressure
[../]
[./gas_ic]
type = FunctionIC
variable = pgas
function = initial_pressure
[../]
[]
[AuxVariables]
[./Seff1VG_Aux]
[../]
[]
[Kernels]
active = 'richardsfwater richardstwater richardsfgas richardstgas'
[./richardstwater]
type = RichardsMassChange
variable = pwater
[../]
[./richardsfwater]
type = RichardsFlux
variable = pwater
[../]
[./richardstgas]
type = RichardsMassChange
variable = pgas
[../]
[./richardsfgas]
type = RichardsFlux
variable = pgas
[../]
[]
[AuxKernels]
[./Seff1VG_AuxK]
type = RichardsSeffAux
variable = Seff1VG_Aux
seff_UO = SeffWater
pressure_vars = 'pwater pgas'
[../]
[]
[DiracKernels]
[./bh]
type = RichardsPolyLineSink
pressures = '-1E9 1E9'
fluxes = '200 200'
point_file = th01.points
SumQuantityUO = total_outflow_mass
variable = pwater
[../]
[]
[Postprocessors]
[./flow_report]
type = RichardsPlotQuantity
uo = total_outflow_mass
[../]
[./p50]
type = PointValue
variable = pwater
point = '50 0 0'
execute_on = timestep_end
[../]
[]
[Functions]
[./initial_pressure]
type = ParsedFunction
value = 1E5
[../]
[]
[Materials]
[./all]
type = RichardsMaterial
block = 1
mat_porosity = 0.1
mat_permeability = '1E-10 0 0 0 1E-10 0 0 0 1E-10'
density_UO = 'DensityWater DensityGas'
relperm_UO = 'RelPermWater RelPermGas'
SUPG_UO = 'SUPGwater SUPGgas'
sat_UO = 'SatWater SatGas'
seff_UO = 'SeffWater SeffGas'
viscosity = '1E-3 1E-5'
gravity = '0 0 0'
linear_shape_fcns = true
[../]
[]
[Preconditioning]
[./usual]
type = SMP
full = true
petsc_options = '-snes_converged_reason -ksp_diagonal_scale -ksp_diagonal_scale_fix -ksp_gmres_modifiedgramschmidt -snes_linesearch_monitor'
petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap -snes_atol -snes_rtol -snes_max_it -ksp_rtol -ksp_atol'
petsc_options_value = 'gmres asm lu NONZERO 2 1E-7 1E-10 20 1E-10 1E-100'
[../]
[]
[Executioner]
type = Transient
end_time = 100
solve_type = NEWTON
[./TimeStepper]
type = FunctionDT
function = dts
[../]
[]
[Outputs]
execute_on = 'timestep_end'
file_base = th22
exodus = true
csv = true
[]
modules/porous_flow/test/tests/aux_kernels/darcy_velocity_lower_2D.i
# checking that the PorousFlowDarcyVelocityComponentLowerDimensional AuxKernel works as expected in 1D+2D situation
# for the fully-saturated case (relative-permeability = 1)
# The 1_frac_in_2D_example.e has size 0.3x0.2x0, and a fracturing running through its
# centre, with normal = (0, 1, 0)
# Porepressure is initialised to grad(P) = (1, 2, 0)
# Fluid_density = 2
# viscosity = 10
# relative_permeability = 1
# permeability = (5, 5, 5) (in the bulk, measured in m^2)
# permeability = (10, 10, 10) (in the fracture, measured in m^3)
# aperture = 0.01
# gravity = (1, 0.5, 0)
# So Darcy velocity in the bulk = (0.5, -0.5, 0)
# in the fracture grad(P) = (1, 0, 0)
# In the fracture the projected gravity vector is
# tangential_gravity = (1, 0, 0)
# So the Darcy velocity in the fracture = (100, 0, 0)
[Mesh]
type = FileMesh
file = 1_frac_in_2D_example.e
[]
[GlobalParams]
PorousFlowDictator = dictator
gravity = '1 0.5 0'
[]
[Variables]
[./pp]
[../]
[]
[ICs]
[./pinit]
type = FunctionIC
function = 'x+2*y'
variable = pp
[../]
[]
[Kernels]
[./dummy]
type = TimeDerivative
variable = pp
[../]
[]
[AuxVariables]
[./bulk_vel_x]
order = CONSTANT
family = MONOMIAL
block = '2 3'
[../]
[./bulk_vel_y]
order = CONSTANT
family = MONOMIAL
block = '2 3'
[../]
[./bulk_vel_z]
order = CONSTANT
family = MONOMIAL
block = '2 3'
[../]
[./fracture_vel_x]
order = CONSTANT
family = MONOMIAL
block = 1
[../]
[./fracture_vel_y]
order = CONSTANT
family = MONOMIAL
block = 1
[../]
[./fracture_vel_z]
order = CONSTANT
family = MONOMIAL
block = 1
[../]
[]
[AuxKernels]
[./bulk_vel_x]
type = PorousFlowDarcyVelocityComponent
variable = bulk_vel_x
component = x
fluid_phase = 0
[../]
[./bulk_vel_y]
type = PorousFlowDarcyVelocityComponent
variable = bulk_vel_y
component = y
fluid_phase = 0
[../]
[./bulk_vel_z]
type = PorousFlowDarcyVelocityComponent
variable = bulk_vel_z
component = z
fluid_phase = 0
[../]
[./fracture_vel_x]
type = PorousFlowDarcyVelocityComponentLowerDimensional
variable = fracture_vel_x
component = x
fluid_phase = 0
aperture = 0.01
[../]
[./fracture_vel_y]
type = PorousFlowDarcyVelocityComponentLowerDimensional
variable = fracture_vel_y
component = y
fluid_phase = 0
aperture = 0.01
[../]
[./fracture_vel_z]
type = PorousFlowDarcyVelocityComponentLowerDimensional
variable = fracture_vel_z
component = z
fluid_phase = 0
aperture = 0.01
[../]
[]
[UserObjects]
[./dictator]
type = PorousFlowDictator
porous_flow_vars = 'pp'
number_fluid_phases = 1
number_fluid_components = 1
[../]
[./pc]
type = PorousFlowCapillaryPressureConst
pc = 0
[../]
[]
[Modules]
[./FluidProperties]
[./simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 1E16
viscosity = 10
density0 = 2
thermal_expansion = 0
[../]
[../]
[]
[Postprocessors]
[./bulk_vel_x]
type = PointValue
variable = bulk_vel_x
point = '0 -0.05 0'
[../]
[./bulk_vel_y]
type = PointValue
variable = bulk_vel_y
point = '0 -0.05 0'
[../]
[./bulk_vel_z]
type = PointValue
variable = bulk_vel_z
point = '0 -0.05 0'
[../]
[./fracture_vel_x]
type = PointValue
point = '0 0 0'
variable = fracture_vel_x
[../]
[./fracture_vel_y]
type = PointValue
point = '0 0 0'
variable = fracture_vel_y
[../]
[./fracture_vel_z]
type = PointValue
point = '0 0 0'
variable = fracture_vel_z
[../]
[]
[Materials]
[./temperature]
type = PorousFlowTemperature
[../]
[./ppss]
type = PorousFlow1PhaseP
porepressure = pp
capillary_pressure = pc
[../]
[./simple_fluid]
type = PorousFlowSingleComponentFluid
fp = simple_fluid
phase = 0
[../]
[./permeability]
type = PorousFlowPermeabilityConst
permeability = '5 0 0 0 5 0 0 0 5'
block = '2 3'
[../]
[./permeability_fracture]
type = PorousFlowPermeabilityConst
permeability = '10 0 0 0 10 0 0 0 10'
block = 1
[../]
[./relperm]
type = PorousFlowRelativePermeabilityCorey
n = 2
phase = 0
[../]
[]
[Executioner]
type = Transient
dt = 1
end_time = 1
[]
[Outputs]
csv = true
[]
modules/heat_conduction/test/tests/meshed_gap_thermal_contact/meshed_gap_thermal_contact_constant_conductance.i
[Mesh]
type = FileMesh
file = meshed_gap.e
dim = 2
[]
[Variables]
[./temp]
block = '1 3'
initial_condition = 1.0
[../]
[]
[Kernels]
[./hc]
type = HeatConduction
variable = temp
block = '1 3'
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = temp
boundary = 1
value = 1
[../]
[./right]
type = DirichletBC
variable = temp
boundary = 4
value = 2
[../]
[]
[ThermalContact]
[./gap_conductance]
type = GapHeatTransfer
variable = temp
master = 2
slave = 3
gap_conductance = 2.5
[../]
[]
[Materials]
[./hcm]
type = HeatConductionMaterial
block = '1 3'
temp = temp
thermal_conductivity = 1
[../]
[]
[Problem]
type = FEProblem
kernel_coverage_check = false
material_coverage_check = false
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
[./out]
type = Exodus
[../]
[]
test/tests/auxkernels/element_quality_aux/element_quality_aux.i
[Mesh]
type = FileMesh
file = mesh.e
[]
[Variables]
[u]
[]
[]
[Kernels]
[diff]
type = Diffusion
variable = u
[]
[]
[BCs]
[left]
type = DirichletBC
variable = u
boundary = 'left'
value = 0
[]
[right]
type = DirichletBC
variable = u
boundary = 'right'
value = 1
[]
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
[AuxVariables]
[quality]
family = MONOMIAL
order = CONSTANT
[]
[]
[AuxKernels]
[qa]
type = ElementQualityAux
variable = quality
metric = SHAPE
[]
[]
modules/porous_flow/test/tests/aux_kernels/darcy_velocity_lower_except.i
# Exception testing for PorousFlowDarcyVelocityComponentLowerDimensional
# Checking that an error is produced if the AuxVariable is not defined only on
# lower-dimensional elements
[Mesh]
type = FileMesh
file = fractured_block.e
[]
[GlobalParams]
PorousFlowDictator = dictator
gravity = '1 0.5 0.2'
[]
[Variables]
[./pp]
[../]
[]
[Kernels]
[./dummy]
type = TimeDerivative
variable = pp
[../]
[]
[AuxVariables]
[./fracture_vel_x]
order = CONSTANT
family = MONOMIAL
[../]
[]
[AuxKernels]
[./fracture_vel_x]
type = PorousFlowDarcyVelocityComponentLowerDimensional
variable = fracture_vel_x
component = x
fluid_phase = 0
[../]
[]
[UserObjects]
[./dictator]
type = PorousFlowDictator
porous_flow_vars = 'pp'
number_fluid_phases = 1
number_fluid_components = 1
[../]
[./pc]
type = PorousFlowCapillaryPressureConst
pc = 0
[../]
[]
[Modules]
[./FluidProperties]
[./simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 1E16
viscosity = 10
density0 = 2
thermal_expansion = 0
[../]
[../]
[]
[Materials]
[./temperature]
type = PorousFlowTemperature
[../]
[./ppss]
type = PorousFlow1PhaseP
porepressure = pp
capillary_pressure = pc
[../]
[./simple_fluid]
type = PorousFlowSingleComponentFluid
fp = simple_fluid
phase = 0
[../]
[./permeability]
type = PorousFlowPermeabilityConst
permeability = '5 0 0 0 5 0 0 0 5'
[../]
[./relperm]
type = PorousFlowRelativePermeabilityCorey
at_nodes = false
n = 2
phase = 0
[../]
[]
[Executioner]
type = Transient
dt = 1
end_time = 1
[]
test/tests/mesh_modifiers/add_all_side_sets/less_simple.i
[Mesh]
type = FileMesh
file = reactor.e
# This MeshModifier currently only works with ReplicatedMesh.
# For more information, refer to #2129.
parallel_type = replicated
[]
[MeshModifiers]
[./block_1]
type = AddAllSideSetsByNormals
[../]
[]
# This input file is intended to be run with the "--mesh-only" option so
# no other sections are required
modules/porous_flow/examples/flow_through_fractured_media/fine_steady.i
# Using a mixed-dimensional mesh
# Steady-state porepressure distribution along a fracture in a porous matrix
# This is used to initialise the transient solute-transport simulation
[Mesh]
type = FileMesh
# The gold mesh is used to reduce the number of large files in the MOOSE repository.
# The porepressure is not read from the gold mesh
file = 'gold/fine_steady_out.e'
block_id = '1 2 3'
block_name = 'fracture matrix1 matrix2'
boundary_id = '1 2'
boundary_name = 'bottom top'
[]
[GlobalParams]
PorousFlowDictator = dictator
gravity = '0 0 0'
[]
[Variables]
[./pp]
[../]
[]
[ICs]
[./pp]
type = ConstantIC
variable = pp
value = 1e6
[../]
[]
[BCs]
[./ptop]
type = PresetBC
variable = pp
boundary = top
value = 1e6
[../]
[./pbottom]
type = PresetBC
variable = pp
boundary = bottom
value = 1.002e6
[../]
[]
[Kernels]
[./adv0]
type = PorousFlowAdvectiveFlux
fluid_component = 0
variable = pp
[../]
[]
[UserObjects]
[./dictator]
type = PorousFlowDictator
porous_flow_vars = 'pp'
number_fluid_phases = 1
number_fluid_components = 1
[../]
[]
[Modules]
[./FluidProperties]
[./simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 2e9
density0 = 1000
thermal_expansion = 0
viscosity = 1e-3
[../]
[../]
[]
[Materials]
[./temperature]
type = PorousFlowTemperature
[../]
[./ppss]
type = PorousFlow1PhaseFullySaturated
porepressure = pp
[../]
[./massfrac]
type = PorousFlowMassFraction
[../]
[./simple_fluid]
type = PorousFlowSingleComponentFluid
fp = simple_fluid
phase = 0
[../]
[./relp]
type = PorousFlowRelativePermeabilityConst
phase = 0
[../]
[./permeability1]
type = PorousFlowPermeabilityConst
permeability = '1.8e-11 0 0 0 1.8e-11 0 0 0 1.8e-11' # kf=3e-8, a=6e-4m. 1.8e-11 = kf * a
block = 'fracture'
[../]
[./permeability2]
type = PorousFlowPermeabilityConst
permeability = '1e-20 0 0 0 1e-20 0 0 0 1e-20'
block = 'matrix1 matrix2'
[../]
[]
[Preconditioning]
active = basic
[./mumps_is_best_for_parallel_jobs]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
[../]
[./basic]
type = SMP
full = true
petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = 'gmres asm lu NONZERO 2 '
[../]
[]
[Executioner]
type = Steady
solve_type = NEWTON
# controls for nonlinear iterations
nl_abs_tol = 1e-9
nl_rel_tol = 1e-10
[]
[Outputs]
exodus = true
execute_on = 'timestep_end'
[]
modules/chemical_reactions/test/tests/desorption/langmuir_jac2.i
# testing whether when we have a centre block containing 'conc' which is a CONSTANT MONOMIAL, we get the correct Jacobian
[Mesh]
type = FileMesh
file = three_eles.e
[]
[Variables]
[./pressure]
[../]
[./conc]
family = MONOMIAL
order = CONSTANT
block = centre_block
[../]
[]
[ICs]
[./p_ic]
type = RandomIC
variable = pressure
min = -1
max = 1
[../]
[./conc_ic]
type = RandomIC
variable = conc
min = -1
max = 1
block = centre_block
[../]
[]
[Kernels]
[./p_dot] # this is just so a kernel is defined everywhere
type = TimeDerivative
variable = pressure
[../]
[./flow_from_matrix]
type = DesorptionFromMatrix
block = centre_block
variable = conc
pressure_var = pressure
[../]
[./flux_to_porespace]
type = DesorptionToPorespace
block = centre_block
variable = pressure
conc_var = conc
[../]
[]
[Materials]
[./nothing] # when any block contains a material, all blocks need to
type = GenericConstantMaterial
block = 'left_block centre_block right_block'
[../]
[./langmuir_params]
type = MollifiedLangmuirMaterial
block = centre_block
one_over_desorption_time_const = 0.813E-10
one_over_adsorption_time_const = 0.813E-10
langmuir_density = 2.34
langmuir_pressure = 1.5
pressure_var = pressure
conc_var = conc
[../]
[]
[Preconditioning]
[./andy]
type = SMP
full = true
#petsc_options = '-snes_test_display'
petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
[../]
[]
[Executioner]
type = Transient
solve_type = Newton
[]
[Outputs]
execute_on = 'timestep_end'
file_base = langmuir_jac2
[]