- variableThe name of the variable that this object applies to
C++ Type:AuxVariableName
Description:The name of the variable that this object applies to
- ebsd_readerThe EBSDReader GeneralUserObject
C++ Type:UserObjectName
Description:The EBSDReader GeneralUserObject
- data_nameThe data to be extracted from the EBSD data by this AuxKernel
C++ Type:MooseEnum
Description:The data to be extracted from the EBSD data by this AuxKernel
<!– MOOSE Documentation Stub: Remove this when content is added. –>
EBSDReaderPointDataAux
under construction:Undocumented Class
The EBSDReaderPointDataAux has not been documented. The content contained on this page includes the basic documentation associated with a MooseObject; however, what is contained is ultimately determined by what is necessary to make the documentation clear for users.
!syntax description /AuxKernels/EBSDReaderPointDataAux
Input Parameters
- execute_onLINEAR TIMESTEP_ENDThe list of flag(s) indicating when this object should be executed, the available options include NONE, INITIAL, LINEAR, NONLINEAR, TIMESTEP_END, TIMESTEP_BEGIN, FINAL, CUSTOM, PRE_DISPLACE.
Default:LINEAR TIMESTEP_END
C++ Type:ExecFlagEnum
Options:NONE INITIAL LINEAR NONLINEAR TIMESTEP_END TIMESTEP_BEGIN FINAL CUSTOM PRE_DISPLACE
Description:The list of flag(s) indicating when this object should be executed, the available options include NONE, INITIAL, LINEAR, NONLINEAR, TIMESTEP_END, TIMESTEP_BEGIN, FINAL, CUSTOM, PRE_DISPLACE.
- boundaryThe list of boundary IDs from the mesh where this boundary condition applies
C++ Type:std::vector
Options:
Description:The list of boundary IDs from the mesh where this boundary condition applies
- blockThe list of block ids (SubdomainID) that this object will be applied
C++ Type:std::vector
Options:
Description:The list of block ids (SubdomainID) that this object will be applied
Optional Parameters
- control_tagsAdds user-defined labels for accessing object parameters via control logic.
C++ Type:std::vector
Options:
Description:Adds user-defined labels for accessing object parameters via control logic.
- enableTrueSet the enabled status of the MooseObject.
Default:True
C++ Type:bool
Options:
Description:Set the enabled status of the MooseObject.
- seed0The seed for the master random number generator
Default:0
C++ Type:unsigned int
Options:
Description:The seed for the master random number generator
- use_displaced_meshFalseWhether or not this object should use the displaced mesh for computation. Note that in the case this is true but no displacements are provided in the Mesh block the undisplaced mesh will still be used.
Default:False
C++ Type:bool
Options:
Description:Whether or not this object should use the displaced mesh for computation. Note that in the case this is true but no displacements are provided in the Mesh block the undisplaced mesh will still be used.
Advanced Parameters
Input Files
- modules/phase_field/test/tests/grain_tracker_test/grain_tracker_ebsd.i
- modules/phase_field/examples/ebsd_reconstruction/IN100-111grn.i
- modules/combined/examples/phase_field-mechanics/EBSD_reconstruction_grain_growth_mech.i
- modules/phase_field/test/tests/reconstruction/EulerAngleVariables2RGBAux.i
- modules/phase_field/test/tests/grain_tracker_test/split_grain.i
- modules/phase_field/test/tests/reconstruction/2phase_reconstruction3.i
- modules/phase_field/test/tests/reconstruction/2phase_reconstruction.i
- modules/phase_field/test/tests/reconstruction/1phase_reconstruction.i
modules/phase_field/test/tests/grain_tracker_test/grain_tracker_ebsd.i
[Mesh]
type = EBSDMesh
filename = 'test.txt'
[]
[GlobalParams]
op_num = 4
var_name_base = gr
[]
[UserObjects]
[./ebsd_reader]
type = EBSDReader
[../]
[./ebsd]
type = PolycrystalEBSD
coloring_algorithm = bt
ebsd_reader = ebsd_reader
output_adjacency_matrix = true
[../]
[./grain_tracker]
type = GrainTracker
threshold = 0.2
connecting_threshold = 0.08
flood_entity_type = ELEMENTAL
compute_halo_maps = true # For displaying HALO fields
polycrystal_ic_uo = ebsd
execute_on = 'initial timestep_end'
[../]
[]
[ICs]
[./PolycrystalICs]
[./PolycrystalColoringIC]
polycrystal_ic_uo = ebsd
[../]
[../]
[]
[Variables]
[./PolycrystalVariables]
[../]
[]
[AuxVariables]
[./bnds]
[../]
[./unique_grains]
family = MONOMIAL
order = CONSTANT
[../]
[./var_indices]
family = MONOMIAL
order = CONSTANT
[../]
[./ebsd_grains]
family = MONOMIAL
order = CONSTANT
[../]
[./phi1]
family = MONOMIAL
order = CONSTANT
[../]
[./halo0]
order = CONSTANT
family = MONOMIAL
[../]
[./halo1]
order = CONSTANT
family = MONOMIAL
[../]
[./halo2]
order = CONSTANT
family = MONOMIAL
[../]
[./halo3]
order = CONSTANT
family = MONOMIAL
[../]
[]
[Kernels]
[./PolycrystalKernel]
[../]
[]
[AuxKernels]
[./BndsCalc]
type = BndsCalcAux
variable = bnds
execute_on = timestep_end
[../]
[./unique_grains]
type = FeatureFloodCountAux
variable = unique_grains
execute_on = 'initial timestep_end'
flood_counter = grain_tracker
field_display = UNIQUE_REGION
[../]
[./var_indices]
type = FeatureFloodCountAux
variable = var_indices
execute_on = 'initial timestep_end'
flood_counter = grain_tracker
field_display = VARIABLE_COLORING
[../]
[./grain_aux]
type = EBSDReaderPointDataAux
variable = ebsd_grains
ebsd_reader = ebsd_reader
data_name = 'feature_id'
execute_on = 'initial timestep_end'
[../]
[./phi1]
type = OutputEulerAngles
euler_angle_provider = ebsd_reader
output_euler_angle = phi1
grain_tracker = grain_tracker
variable = phi1
[../]
[./halo0]
type = FeatureFloodCountAux
variable = halo0
map_index = 0
field_display = HALOS
flood_counter = grain_tracker
[../]
[./halo1]
type = FeatureFloodCountAux
variable = halo1
map_index = 1
field_display = HALOS
flood_counter = grain_tracker
[../]
[./halo2]
type = FeatureFloodCountAux
variable = halo2
map_index = 2
field_display = HALOS
flood_counter = grain_tracker
[../]
[./halo3]
type = FeatureFloodCountAux
variable = halo3
map_index = 3
field_display = HALOS
flood_counter = grain_tracker
[../]
[]
[Materials]
[./CuGrGr]
type = GBEvolution
T = 500 #K
wGB = 0.75 #micron
length_scale = 1.0e-6
time_scale = 1.0e-4
GBmob0 = 2.5e-6
Q = 0.23
GBenergy = 0.708
molar_volume = 7.11e-6
[../]
[]
[Postprocessors]
[./n_nodes]
type = NumNodes
execute_on = timestep_end
[../]
[./DOFs]
type = NumDOFs
[../]
[]
[Executioner]
type = Transient
scheme = 'bdf2'
#Preconditioned JFNK (default)
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart -pc_hypre_boomeramg_strong_threshold'
petsc_options_value = 'hypre boomeramg 31 0.7'
l_tol = 1.0e-4
l_max_its = 20
nl_rel_tol = 1.0e-9
nl_max_its = 20
start_time = 0.0
num_steps = 1
dt = 0.05
[]
[Outputs]
execute_on = 'initial'
exodus = true
perf_graph = true
[]
modules/phase_field/examples/ebsd_reconstruction/IN100-111grn.i
[Mesh]
type = EBSDMesh
filename = IN100_120x120.txt
uniform_refine = 2
[]
[GlobalParams]
op_num = 8
var_name_base = gr
[]
[UserObjects]
[./ebsd_reader]
type = EBSDReader
[../]
[./ebsd]
type = PolycrystalEBSD
coloring_algorithm = bt
ebsd_reader = ebsd_reader
enable_var_coloring = true
[../]
[./grain_tracker]
type = GrainTracker
flood_entity_type = ELEMENTAL
compute_halo_maps = true # For displaying HALO fields
polycrystal_ic_uo = ebsd
[../]
[]
[ICs]
[./PolycrystalICs]
[./PolycrystalColoringIC]
polycrystal_ic_uo = ebsd
[../]
[../]
[]
[Variables]
[./PolycrystalVariables]
[../]
[]
[AuxVariables]
[./bnds]
[../]
[./unique_grains_ic]
order = CONSTANT
family = MONOMIAL
[../]
[./unique_grains]
order = CONSTANT
family = MONOMIAL
[../]
[./ghost_elements]
order = CONSTANT
family = MONOMIAL
[../]
[./halos]
order = CONSTANT
family = MONOMIAL
[../]
[./var_indices_ic]
order = CONSTANT
family = MONOMIAL
[../]
[./var_indices]
order = CONSTANT
family = MONOMIAL
[../]
[./ebsd_grains]
family = MONOMIAL
order = CONSTANT
[../]
[]
[Kernels]
[./PolycrystalKernel]
[../]
[]
[AuxKernels]
[./BndsCalc]
type = BndsCalcAux
variable = bnds
execute_on = 'initial timestep_end'
[../]
[./ghost_elements]
type = FeatureFloodCountAux
variable = ghost_elements
field_display = GHOSTED_ENTITIES
execute_on = 'initial timestep_end'
flood_counter = grain_tracker
[../]
[./halos]
type = FeatureFloodCountAux
variable = halos
field_display = HALOS
execute_on = 'initial timestep_end'
flood_counter = grain_tracker
[../]
[./var_indices_ic]
type = FeatureFloodCountAux
variable = var_indices_ic
execute_on = 'initial'
flood_counter = ebsd
field_display = VARIABLE_COLORING
[../]
[./unique_grains_ic]
type = FeatureFloodCountAux
variable = unique_grains_ic
execute_on = 'initial'
flood_counter = ebsd
field_display = UNIQUE_REGION
[../]
[./var_indices]
type = FeatureFloodCountAux
variable = var_indices
execute_on = 'initial timestep_end'
flood_counter = grain_tracker
field_display = VARIABLE_COLORING
[../]
[./unique_grains]
type = FeatureFloodCountAux
variable = unique_grains
execute_on = 'initial timestep_end'
flood_counter = grain_tracker
field_display = UNIQUE_REGION
[../]
[./grain_aux]
type = EBSDReaderPointDataAux
variable = ebsd_grains
ebsd_reader = ebsd_reader
data_name = 'feature_id'
execute_on = 'initial timestep_end'
[../]
[]
[Modules]
[./PhaseField]
[./EulerAngles2RGB]
crystal_structure = cubic
euler_angle_provider = ebsd_reader
grain_tracker = grain_tracker
[../]
[../]
[]
[Materials]
[./Copper]
# T = 500 # K
type = GBEvolution
T = 500
wGB = 0.6 # um
GBmob0 = 2.5e-6 # m^4/(Js) from Schoenfelder 1997
Q = 0.23 # Migration energy in eV
GBenergy = 0.708 # GB energy in J/m^2
molar_volume = 7.11e-6 # Molar volume in m^3/mol
length_scale = 1.0e-6
time_scale = 1.0e-6
[../]
[]
[Postprocessors]
[./dt]
type = TimestepSize
[../]
[./n_elements]
type = NumElems
execute_on = 'initial timestep_end'
[../]
[./n_nodes]
type = NumNodes
execute_on = 'initial timestep_end'
[../]
[./DOFs]
type = NumDOFs
[../]
[]
[Executioner]
type = Transient
scheme = bdf2
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type -pc_hypre_boomeramg_strong_threshold'
petsc_options_value = 'hypre boomeramg 0.7'
l_tol = 1.0e-4
l_max_its = 20
nl_max_its = 20
nl_rel_tol = 1.0e-8
start_time = 0.0
num_steps = 30
[./TimeStepper]
type = IterationAdaptiveDT
cutback_factor = 0.9
dt = 10.0
growth_factor = 1.1
optimal_iterations = 7
[../]
[./Adaptivity]
initial_adaptivity = 2
refine_fraction = 0.7
coarsen_fraction = 0.1
max_h_level = 2
[../]
[]
[Outputs]
exodus = true
checkpoint = true
perf_graph = true
[]
modules/combined/examples/phase_field-mechanics/EBSD_reconstruction_grain_growth_mech.i
# This example reconstructs the grain structure from an EBSD data file
# Then, an isotropic grain model is run with linear elasticity and an anisotropic
# elasticity tensor that uses the measured EBSD angles.
[Mesh]
uniform_refine = 2 #Mesh can go two levels coarser than the EBSD grid
type = EBSDMesh
filename = IN100_128x128.txt
[]
[GlobalParams]
op_num = 8
var_name_base = gr
displacements = 'disp_x disp_y'
[]
[Variables]
[./PolycrystalVariables] #Polycrystal variable generation (30 order parameters)
[../]
[./disp_x]
[../]
[./disp_y]
[../]
[]
[AuxVariables]
[./bnds]
[../]
[./gt_indices]
order = CONSTANT
family = MONOMIAL
[../]
[./unique_grains]
order = CONSTANT
family = MONOMIAL
[../]
[./vonmises_stress]
order = CONSTANT
family = MONOMIAL
[../]
[./C1111]
order = CONSTANT
family = MONOMIAL
[../]
[./phi1]
order = CONSTANT
family = MONOMIAL
[../]
[./Phi]
order = CONSTANT
family = MONOMIAL
[../]
[./phi2]
order = CONSTANT
family = MONOMIAL
[../]
[./EBSD_grain]
family = MONOMIAL
order = CONSTANT
[../]
[]
[ICs]
[./PolycrystalICs]
[./ReconVarIC]
ebsd_reader = ebsd
coloring_algorithm = bt
[../]
[../]
[]
[Kernels]
[./PolycrystalKernel]
[../]
[./PolycrystalElasticDrivingForce]
[../]
[./TensorMechanics]
[../]
[]
[AuxKernels]
[./BndsCalc]
type = BndsCalcAux
variable = bnds
execute_on = 'initial timestep_end'
[../]
[./gt_indices]
type = FeatureFloodCountAux
variable = gt_indices
execute_on = 'initial timestep_end'
flood_counter = grain_tracker
field_display = VARIABLE_COLORING
[../]
[./unique_grains]
type = FeatureFloodCountAux
variable = unique_grains
execute_on = 'initial timestep_end'
flood_counter = grain_tracker
field_display = UNIQUE_REGION
[../]
[./C1111]
type = RankFourAux
variable = C1111
rank_four_tensor = elasticity_tensor
index_l = 0
index_j = 0
index_k = 0
index_i = 0
execute_on = timestep_end
[../]
[./vonmises_stress]
type = RankTwoScalarAux
variable = vonmises_stress
rank_two_tensor = stress
scalar_type = VonMisesStress
execute_on = timestep_end
[../]
[./phi1]
type = OutputEulerAngles
variable = phi1
euler_angle_provider = ebsd
grain_tracker = grain_tracker
output_euler_angle = 'phi1'
execute_on = 'initial'
[../]
[./Phi]
type = OutputEulerAngles
variable = Phi
euler_angle_provider = ebsd
grain_tracker = grain_tracker
output_euler_angle = 'Phi'
execute_on = 'initial'
[../]
[./phi2]
type = OutputEulerAngles
variable = phi2
euler_angle_provider = ebsd
grain_tracker = grain_tracker
output_euler_angle = 'phi2'
execute_on = 'initial'
[../]
[./grain_aux]
type = EBSDReaderPointDataAux
variable = EBSD_grain
ebsd_reader = ebsd
data_name = 'feature_id'
execute_on = 'initial'
[../]
[]
[BCs]
[./top_displacement]
type = PresetBC
variable = disp_y
boundary = top
value = -2.0
[../]
[./x_anchor]
type = PresetBC
variable = disp_x
boundary = 'left right'
value = 0.0
[../]
[./y_anchor]
type = PresetBC
variable = disp_y
boundary = bottom
value = 0.0
[../]
[]
[Modules]
[./PhaseField]
[./EulerAngles2RGB]
crystal_structure = cubic
euler_angle_provider = ebsd
grain_tracker = grain_tracker
[../]
[../]
[]
[Materials]
[./Copper]
# T = 500 # K
type = GBEvolution
block = 0
T = 500
wGB = 0.6 # um
GBmob0 = 2.5e-6 # m^4/(Js) from Schoenfelder 1997
Q = 0.23 # Migration energy in eV
GBenergy = 0.708 # GB energy in J/m^2
molar_volume = 7.11e-6; # Molar volume in m^3/mol
length_scale = 1.0e-6
time_scale = 1.0e-6
[../]
[./ElasticityTensor]
type = ComputePolycrystalElasticityTensor
grain_tracker = grain_tracker
[../]
[./strain]
type = ComputeSmallStrain
block = 0
displacements = 'disp_x disp_y'
[../]
[./stress]
type = ComputeLinearElasticStress
block = 0
[../]
[]
[Postprocessors]
[./dt]
type = TimestepSize
[../]
[./n_elements]
type = NumElems
execute_on = 'initial timestep_end'
[../]
[./n_nodes]
type = NumNodes
execute_on = 'initial timestep_end'
[../]
[./DOFs]
type = NumDOFs
[../]
[]
[UserObjects]
[./ebsd]
type = EBSDReader
[../]
[./grain_tracker]
type = GrainTrackerElasticity
compute_var_to_feature_map = true
ebsd_reader = ebsd
fill_method = symmetric9
C_ijkl = '1.27e5 0.708e5 0.708e5 1.27e5 0.708e5 1.27e5 0.7355e5 0.7355e5 0.7355e5'
euler_angle_provider = ebsd
[../]
[]
[Executioner]
type = Transient
scheme = bdf2
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type -pc_hypre_boomeramg_strong_threshold'
petsc_options_value = ' hypre boomeramg 0.7'
l_tol = 1.0e-4
l_max_its = 20
nl_max_its = 20
nl_rel_tol = 1.0e-8
start_time = 0.0
num_steps = 30
dt = 10
[./Adaptivity]
initial_adaptivity = 0
refine_fraction = 0.7
coarsen_fraction = 0.1
max_h_level = 2
[../]
[./TimeStepper]
type = IterationAdaptiveDT
cutback_factor = 0.9
dt = 10.0
growth_factor = 1.1
optimal_iterations = 7
[../]
[]
[Outputs]
csv = true
exodus = true
[]
modules/phase_field/test/tests/reconstruction/EulerAngleVariables2RGBAux.i
[Mesh]
type = EBSDMesh
filename = IN100_001_28x28_Clean_Marmot.txt
[]
[UserObjects]
[./ebsd]
type = EBSDReader
[../]
[]
[AuxVariables]
[./phi1]
family = MONOMIAL
order = CONSTANT
[../]
[./phi]
family = MONOMIAL
order = CONSTANT
[../]
[./phi2]
family = MONOMIAL
order = CONSTANT
[../]
[./phase]
order = CONSTANT
family = MONOMIAL
[../]
[./symmetry]
order = CONSTANT
family = MONOMIAL
[../]
[./rgb]
order = CONSTANT
family = MONOMIAL
[../]
[]
[AuxKernels]
[./phi1_aux]
type = EBSDReaderPointDataAux
variable = phi1
ebsd_reader = ebsd
data_name = phi1
execute_on = initial
[../]
[./phi_aux]
type = EBSDReaderPointDataAux
variable = phi
ebsd_reader = ebsd
data_name = phi
execute_on = initial
[../]
[./phi2_aux]
type = EBSDReaderPointDataAux
variable = phi2
ebsd_reader = ebsd
data_name = phi2
execute_on = initial
[../]
[./phase_aux]
type = EBSDReaderPointDataAux
variable = phase
ebsd_reader = ebsd
data_name = phase
execute_on = initial
[../]
[./symmetry_aux]
type = EBSDReaderPointDataAux
variable = symmetry
ebsd_reader = ebsd
data_name = symmetry
execute_on = initial
[../]
[./rgb]
type = EulerAngleVariables2RGBAux
variable = rgb
phi1 = phi1
phi = phi
phi2 = phi2
phase = phase
symmetry = symmetry
execute_on = initial
[../]
[]
[Executioner]
type = Steady
[]
[Problem]
solve = false
kernel_coverage_check = false
[]
[Outputs]
exodus = true
show = 'rgb'
[]
modules/phase_field/test/tests/grain_tracker_test/split_grain.i
[Mesh]
type = EBSDMesh
filename = EBSD_split_grain.txt
[]
[GlobalParams]
op_num = 4
var_name_base = gr
[]
[UserObjects]
[./ebsd_reader]
type = EBSDReader
[../]
[./ebsd]
type = PolycrystalEBSD
coloring_algorithm = bt
ebsd_reader = ebsd_reader
enable_var_coloring = true
output_adjacency_matrix = true
[../]
[./grain_tracker]
type = GrainTracker
flood_entity_type = ELEMENTAL
compute_halo_maps = true # For displaying HALO fields
polycrystal_ic_uo = ebsd
[../]
[]
[ICs]
[./PolycrystalICs]
[./PolycrystalColoringIC]
polycrystal_ic_uo = ebsd
[../]
[../]
[]
[Variables]
[./PolycrystalVariables]
[../]
[]
[AuxVariables]
[./bnds]
[../]
[./unique_grains]
order = CONSTANT
family = MONOMIAL
[../]
[./ghost_elements]
order = CONSTANT
family = MONOMIAL
[../]
[./halos]
order = CONSTANT
family = MONOMIAL
[../]
[./var_indices]
order = CONSTANT
family = MONOMIAL
[../]
[./ebsd_grains]
family = MONOMIAL
order = CONSTANT
[../]
[]
[Kernels]
[./PolycrystalKernel]
[../]
[]
[AuxKernels]
[./BndsCalc]
type = BndsCalcAux
variable = bnds
execute_on = 'initial timestep_end'
[../]
[./ghost_elements]
type = FeatureFloodCountAux
variable = ghost_elements
field_display = GHOSTED_ENTITIES
execute_on = 'initial timestep_end'
flood_counter = grain_tracker
[../]
[./halos]
type = FeatureFloodCountAux
variable = halos
field_display = HALOS
execute_on = 'initial timestep_end'
flood_counter = grain_tracker
[../]
[./var_indices]
type = FeatureFloodCountAux
variable = var_indices
execute_on = 'initial timestep_end'
flood_counter = grain_tracker
field_display = VARIABLE_COLORING
[../]
[./unique_grains]
type = FeatureFloodCountAux
variable = unique_grains
execute_on = 'initial timestep_end'
flood_counter = grain_tracker
field_display = UNIQUE_REGION
[../]
[./grain_aux]
type = EBSDReaderPointDataAux
variable = ebsd_grains
ebsd_reader = ebsd_reader
data_name = 'feature_id'
execute_on = 'initial timestep_end'
[../]
[]
[Modules]
[./PhaseField]
[./EulerAngles2RGB]
crystal_structure = cubic
euler_angle_provider = ebsd_reader
grain_tracker = grain_tracker
[../]
[../]
[]
[Materials]
[./Copper]
# T = 500 # K
type = GBEvolution
T = 500
wGB = 0.6 # um
GBmob0 = 2.5e-6 # m^4/(Js) from Schoenfelder 1997
Q = 0.23 # Migration energy in eV
GBenergy = 0.708 # GB energy in J/m^2
molar_volume = 7.11e-6 # Molar volume in m^3/mol
length_scale = 1.0e-6
time_scale = 1.0e-6
[../]
[]
[Postprocessors]
[./n_elements]
type = NumElems
execute_on = 'initial timestep_end'
[../]
[./n_nodes]
type = NumNodes
execute_on = 'initial timestep_end'
[../]
[./DOFs]
type = NumDOFs
[../]
[]
[Executioner]
type = Transient
scheme = bdf2
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type -pc_hypre_boomeramg_strong_threshold'
petsc_options_value = 'hypre boomeramg 0.7'
l_tol = 1.0e-4
l_max_its = 20
nl_max_its = 20
nl_rel_tol = 1.0e-8
start_time = 0.0
num_steps = 2
[./TimeStepper]
type = IterationAdaptiveDT
cutback_factor = 0.9
dt = 10.0
growth_factor = 1.1
optimal_iterations = 7
[../]
[]
[Outputs]
exodus = true
csv = true
perf_graph = true
[]
modules/phase_field/test/tests/reconstruction/2phase_reconstruction3.i
#
# In this test , which is set up similarly to 2phase_reconstruction_test2.i
# we demonstrate that the feature numbers in the EBSD file can be chosen arbitrarily.
# There is no need for then to start at a certain index or even to be contiguous!
# The EBSDReaderPointDataAux AuxKernel outputs the original feature IDs (grain numbers)
#
[Problem]
type = FEProblem
solve = false
kernel_coverage_check = false
[]
[Mesh]
type = EBSDMesh
filename = Renumbered.txt
[]
[GlobalParams]
op_num = 2
var_name_base = gr
[]
[UserObjects]
[./ebsd_reader]
type = EBSDReader
[../]
[./ebsd]
type = PolycrystalEBSD
coloring_algorithm = bt
ebsd_reader = ebsd_reader
phase = 1
output_adjacency_matrix = true
[../]
[]
[ICs]
[./PolycrystalICs]
[./PolycrystalColoringIC]
polycrystal_ic_uo = ebsd
[../]
[../]
[]
[AuxVariables]
[./GRAIN]
family = MONOMIAL
order = CONSTANT
[../]
[]
[AuxKernels]
[./grain_aux]
type = EBSDReaderPointDataAux
variable = GRAIN
ebsd_reader = ebsd_reader
data_name = 'feature_id'
execute_on = 'initial'
[../]
[]
[Variables]
[./PolycrystalVariables]
[../]
[]
[Executioner]
type = Transient
num_steps = 0
[]
[Outputs]
exodus = true
[]
modules/phase_field/test/tests/reconstruction/2phase_reconstruction.i
#
# In this test we set the initial condition of two variables
# based on solely the phase information in a given EBSD data file,
# ignoring the feature IDs entirely
#
[Problem]
type = FEProblem
solve = false
kernel_coverage_check = false
[]
# The following sections are extracted in the documentation in
# moose/docs/content/modules/phase_field/ICs/EBSD.md
[Mesh]
# Create a mesh representing the EBSD data
type = EBSDMesh
filename = 'Ti_2Phase_28x28_ebsd.txt'
[]
[UserObjects]
[./ebsd]
# Read in the EBSD data. Uses the filename given in the mesh block.
type = EBSDReader
[../]
[]
[Variables]
# Creates the two variables being initialized
[./c1]
[../]
[./c2]
[../]
[]
[ICs]
[./phase1_recon]
# Initializes the variable info from the ebsd data
type = ReconPhaseVarIC
ebsd_reader = ebsd
phase = 1
variable = c1
[../]
[./phase2_recon]
type = ReconPhaseVarIC
ebsd_reader = ebsd
phase = 2
variable = c2
[../]
[]
#ENDDOC - End of the file section that is included in the documentation. Do not change this line!
[AuxVariables]
[./PHI1]
family = MONOMIAL
order = CONSTANT
[../]
[./PHI]
family = MONOMIAL
order = CONSTANT
[../]
[./APHI2]
family = MONOMIAL
order = CONSTANT
[../]
[./PHI2]
family = MONOMIAL
order = CONSTANT
[../]
[./PHASE]
family = MONOMIAL
order = CONSTANT
[../]
[]
[AuxKernels]
[./phi1_aux]
type = EBSDReaderPointDataAux
variable = PHI1
ebsd_reader = ebsd
data_name = 'phi1'
execute_on = 'initial'
[../]
[./phi_aux]
type = EBSDReaderPointDataAux
variable = PHI
ebsd_reader = ebsd
data_name = 'phi'
execute_on = 'initial'
[../]
[./phi2_aux]
type = EBSDReaderPointDataAux
variable = PHI2
ebsd_reader = ebsd
data_name = 'phi2'
execute_on = 'initial'
[../]
[./phase_aux]
type = EBSDReaderPointDataAux
variable = PHASE
ebsd_reader = ebsd
data_name = 'phase'
execute_on = 'initial'
[../]
[]
[Executioner]
type = Transient
num_steps = 0
[]
[Outputs]
exodus = true
[]
modules/phase_field/test/tests/reconstruction/1phase_reconstruction.i
#
# In this test we set the initial condition of a set of order parameters
# by pulling out the grain data from given EBSD data file ignoring the phase completely.
#
[Problem]
type = FEProblem
solve = false
kernel_coverage_check = false
[]
# The following sections are extracted in the documentation in
# moose/docs/content/modules/phase_field/ICs/EBSD.md
[Mesh]
# Create a mesh representing the EBSD data
type = EBSDMesh
filename = IN100_001_28x28_Marmot.txt
[]
[GlobalParams]
# Define the number and names of the order parameters used to represent the grains
op_num = 4
var_name_base = gr
[]
[UserObjects]
[./ebsd_reader]
# Read in the EBSD data. Uses the filename given in the mesh block.
type = EBSDReader
[../]
[./ebsd]
type = PolycrystalEBSD
coloring_algorithm = bt
ebsd_reader = ebsd_reader
output_adjacency_matrix = true
[../]
[./grain_tracker]
type = GrainTracker
# For displaying HALO fields
compute_halo_maps = true
# Link in the ebsd userobject here so that grain tracker can extract info from it
polycrystal_ic_uo = ebsd
[../]
[]
[Variables]
[./PolycrystalVariables]
# Create all the order parameters
order = FIRST
family = LAGRANGE
[../]
[]
[ICs]
[./PolycrystalICs]
[./PolycrystalColoringIC]
# Uses the data from the user object 'ebsd' to initialize the variables for all the order parameters.
polycrystal_ic_uo = ebsd
[../]
[../]
[]
#ENDDOC - End of the file section that is included in the documentation. Do not change this line!
[GlobalParams]
execute_on = 'initial'
family = MONOMIAL
order = CONSTANT
[]
[AuxVariables]
[./PHI1]
[../]
[./PHI]
[../]
[./PHI2]
[../]
[./GRAIN]
[../]
[./unique_grains]
[../]
[./var_indices]
[../]
[./halo0]
[../]
[./halo1]
[../]
[./halo2]
[../]
[./halo3]
[../]
[]
[AuxKernels]
[./phi1_aux]
type = EBSDReaderPointDataAux
variable = PHI1
ebsd_reader = ebsd_reader
data_name = 'phi1'
[../]
[./phi_aux]
type = EBSDReaderPointDataAux
variable = PHI
ebsd_reader = ebsd_reader
data_name = 'phi'
[../]
[./phi2_aux]
type = EBSDReaderPointDataAux
variable = PHI2
ebsd_reader = ebsd_reader
data_name = 'phi2'
[../]
[./grain_aux]
type = EBSDReaderPointDataAux
variable = GRAIN
ebsd_reader = ebsd_reader
data_name = 'feature_id'
[../]
[./unique_grains]
type = FeatureFloodCountAux
variable = unique_grains
flood_counter = grain_tracker
field_display = UNIQUE_REGION
[../]
[./var_indices]
type = FeatureFloodCountAux
variable = var_indices
flood_counter = grain_tracker
field_display = VARIABLE_COLORING
[../]
[./halo0]
type = FeatureFloodCountAux
variable = halo0
map_index = 0
field_display = HALOS
flood_counter = grain_tracker
[../]
[./halo1]
type = FeatureFloodCountAux
variable = halo1
map_index = 1
field_display = HALOS
flood_counter = grain_tracker
[../]
[./halo2]
type = FeatureFloodCountAux
variable = halo2
map_index = 2
field_display = HALOS
flood_counter = grain_tracker
[../]
[./halo3]
type = FeatureFloodCountAux
variable = halo3
map_index = 3
field_display = HALOS
flood_counter = grain_tracker
[../]
[]
[Executioner]
type = Steady
[]
[Outputs]
exodus = true
[]