reduced_basis_ex1.C

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// The libMesh Finite Element Library.
// Copyright (C) 2002-2019 Benjamin S. Kirk, John W. Peterson, Roy H. Stogner
 
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
// version 2.1 of the License, or (at your option) any later version.
 
// This library is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
// Lesser General Public License for more details.
 
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
 
// rbOOmit: An implementation of the Certified Reduced Basis method.
// Copyright (C) 2009, 2010 David J. Knezevic
// This file is part of rbOOmit.
 
 
 
// <h1>Reduced Basis Example 1 - Certified Reduced Basis Method</h1>
// \author David Knezevic
// \date 2010
//
// In this example problem we use the Certified Reduced Basis method
// to solve a steady convection-diffusion problem on the unit square.
// The reduced basis method relies on an expansion of the PDE in the
// form \sum_q=1^Q_a theta_a^q(\mu) * a^q(u,v) = \sum_q=1^Q_f
// theta_f^q(\mu) f^q(v) where theta_a, theta_f are parameter
// dependent functions and a^q, f^q are parameter independent
// operators (\mu denotes a parameter).
//
// We first attach the parameter dependent functions and parameter
// independent operators to the RBSystem. Then in Offline mode, a
// reduced basis space is generated and written out to the directory
// "offline_data". In Online mode, the reduced basis data in
// "offline_data" is read in and used to solve the reduced problem for
// the parameters specified in reduced_basis_ex1.in.
//
// We also attach four outputs to the system which are averages over
// certain subregions of the domain. In Online mode, we print out the
// values of these outputs as well as rigorous error bounds with
// respect to the output associated with the "truth" finite element
// discretization.
 
// C++ include files that we need
#include <iostream>
#include <algorithm>
#include <cstdlib> // *must* precede <cmath> for proper std:abs() on PGI, Sun Studio CC
#include <cmath>
#include <set>
 
// Basic include file needed for the mesh functionality.
#include "libmesh/libmesh.h"
#include "libmesh/mesh.h"
#include "libmesh/mesh_generation.h"
#include "libmesh/exodusII_io.h"
#include "libmesh/equation_systems.h"
#include "libmesh/dof_map.h"
#include "libmesh/getpot.h"
#include "libmesh/elem.h"
#include "libmesh/rb_data_serialization.h"
#include "libmesh/rb_data_deserialization.h"
#include "libmesh/enum_solver_package.h"
 
// local includes
#include "rb_classes.h"
#include "assembly.h"
 
// Bring in everything from the libMesh namespace
using namespace libMesh;
 
// The main program.
int main (int argc, char ** argv)
{
  // Initialize libMesh.
  LibMeshInit init (argc, argv);
 
  // This example requires a linear solver package.
  libmesh_example_requires(libMesh::default_solver_package() != INVALID_SOLVER_PACKAGE,
                           "--enable-petsc, --enable-trilinos, or --enable-eigen");
 
#if !defined(LIBMESH_HAVE_XDR)
  // We need XDR support to write out reduced bases
  libmesh_example_requires(false, "--enable-xdr");
#elif defined(LIBMESH_DEFAULT_SINGLE_PRECISION)
  // XDR binary support requires double precision
  libmesh_example_requires(false, "--disable-singleprecision");
#endif
  // FIXME: This example currently segfaults with Trilinos?  It works
  // with PETSc and Eigen sparse linear solvers though.
  libmesh_example_requires(libMesh::default_solver_package() != TRILINOS_SOLVERS, "--enable-petsc");
 
  // Skip this 2D example if libMesh was compiled as 1D-only.
  libmesh_example_requires(2 <= LIBMESH_DIM, "2D support");
 
#ifndef LIBMESH_ENABLE_DIRICHLET
  libmesh_example_requires(false, "--enable-dirichlet");
#else
 
  // Parse the input file (reduced_basis_ex1.in) using GetPot
  std::string parameters_filename = "reduced_basis_ex1.in";
  GetPot infile(parameters_filename);
 
  unsigned int n_elem = infile("n_elem", 1);       // Determines the number of elements in the "truth" mesh
  const unsigned int dim = 2;                      // The number of spatial dimensions
 
  bool store_basis_functions = infile("store_basis_functions", true); // Do we write the RB basis functions to disk?
 
  // Read the "online_mode" flag from the command line
  GetPot command_line (argc, argv);
  int online_mode = 0;
  if (command_line.search(1, "-online_mode"))
    online_mode = command_line.next(online_mode);
 
  // Build a mesh on the default MPI communicator.
  Mesh mesh (init.comm(), dim);
  MeshTools::Generation::build_square (mesh,
                                       n_elem, n_elem,
                                       0., 1.,
                                       0., 1.,
                                       QUAD4);
 
  // Create an equation systems object.
  EquationSystems equation_systems (mesh);
 
  // We override RBConstruction with SimpleRBConstruction in order to
  // specialize a few functions for this particular problem.
  SimpleRBConstruction & rb_con =
    equation_systems.add_system<SimpleRBConstruction> ("RBConvectionDiffusion");
 
  // Initialize the data structures for the equation system.
  equation_systems.init ();
 
  // Print out some information about the "truth" discretization
  equation_systems.print_info();
  mesh.print_info();
 
  // Build a new RBEvaluation object which will be used to perform
  // Reduced Basis calculations. This is required in both the
  // "Offline" and "Online" stages.
  SimpleRBEvaluation rb_eval(mesh.comm());
 
  // We need to give the RBConstruction object a pointer to
  // our RBEvaluation object
  rb_con.set_rb_evaluation(rb_eval);
 
  if (!online_mode) // Perform the Offline stage of the RB method
    {
      // Read in the data that defines this problem from the specified text file
      rb_con.process_parameters_file(parameters_filename);
 
      // Print out info that describes the current setup of rb_con
      rb_con.print_info();
 
      // Prepare rb_con for the Construction stage of the RB method.
      // This sets up the necessary data structures and performs
      // initial assembly of the "truth" affine expansion of the PDE.
      rb_con.initialize_rb_construction();
 
      // Compute the reduced basis space by computing "snapshots", i.e.
      // "truth" solves, at well-chosen parameter values and employing
      // these snapshots as basis functions.
      rb_con.train_reduced_basis();
 
      // Write out the data that will subsequently be required for the Evaluation stage
#if defined(LIBMESH_HAVE_CAPNPROTO)
      RBDataSerialization::RBEvaluationSerialization rb_eval_writer(rb_con.get_rb_evaluation());
      rb_eval_writer.write_to_file("rb_eval.bin");
#else
      rb_con.get_rb_evaluation().legacy_write_offline_data_to_files();
#endif
 
      // If requested, write out the RB basis functions for visualization purposes
      if (store_basis_functions)
        {
          // Write out the basis functions
          rb_con.get_rb_evaluation().write_out_basis_functions(rb_con);
        }
 
      // Basis functions should be orthonormal, so
      // print out the inner products to check this
      rb_con.print_basis_function_orthogonality();
    }
  else // Perform the Online stage of the RB method
    {
      // Read in the reduced basis data
#if defined(LIBMESH_HAVE_CAPNPROTO)
      RBDataDeserialization::RBEvaluationDeserialization rb_eval_reader(rb_eval);
      rb_eval_reader.read_from_file("rb_eval.bin", /*read_error_bound_data*/ true);
#else
      rb_eval.legacy_read_offline_data_from_files();
#endif
 
      // Read in online_N and initialize online parameters
      unsigned int online_N = infile("online_N", 1);
      Real online_x_vel = infile("online_x_vel", 0.);
      Real online_y_vel = infile("online_y_vel", 0.);
      RBParameters online_mu;
      online_mu.set_value("x_vel", online_x_vel);
      online_mu.set_value("y_vel", online_y_vel);
      rb_eval.set_parameters(online_mu);
      rb_eval.print_parameters();
 
      // Now do the Online solve using the precomputed reduced basis
      rb_eval.rb_solve(online_N);
 
      // Print out outputs as well as the corresponding output error bounds.
      libMesh::out << "output 1, value = " << rb_eval.RB_outputs[0]
                   << ", bound = " << rb_eval.RB_output_error_bounds[0]
                   << std::endl;
      libMesh::out << "output 2, value = " << rb_eval.RB_outputs[1]
                   << ", bound = " << rb_eval.RB_output_error_bounds[1]
                   << std::endl;
      libMesh::out << "output 3, value = " << rb_eval.RB_outputs[2]
                   << ", bound = " << rb_eval.RB_output_error_bounds[2]
                   << std::endl;
      libMesh::out << "output 4, value = " << rb_eval.RB_outputs[3]
                   << ", bound = " << rb_eval.RB_output_error_bounds[3]
                   << std::endl << std::endl;
 
      if (store_basis_functions)
        {
          // Read in the basis functions
          rb_eval.read_in_basis_functions(rb_con);
 
          // Plot the solution
          rb_con.load_rb_solution();
#ifdef LIBMESH_HAVE_EXODUS_API
          ExodusII_IO(mesh).write_equation_systems ("RB_sol.e", equation_systems);
#endif
 
          // Plot the first basis function that was generated from the train_reduced_basis
          // call in the Offline stage
          rb_con.load_basis_function(0);
#ifdef LIBMESH_HAVE_EXODUS_API
          ExodusII_IO(mesh).write_equation_systems ("bf0.e", equation_systems);
#endif
        }
    }
 
#endif // LIBMESH_ENABLE_DIRICHLET
 
  return 0;
}