petsc_matrix.h

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// The libMesh Finite Element Library.
// Copyright (C) 2002-2019 Benjamin S. Kirk, John W. Peterson, Roy H. Stogner
 
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
// version 2.1 of the License, or (at your option) any later version.
 
// This library is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
// Lesser General Public License for more details.
 
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
 
 
 
#ifndef LIBMESH_PETSC_MATRIX_H
#define LIBMESH_PETSC_MATRIX_H
 
#include "libmesh/libmesh_common.h"
 
#ifdef LIBMESH_HAVE_PETSC
 
// Local includes
#include "libmesh/sparse_matrix.h"
#include "libmesh/petsc_macro.h"
 
// C++ includes
#include <algorithm>
#ifdef LIBMESH_HAVE_CXX11_THREAD
#include <atomic>
#include <mutex>
#endif
 
// Macro to identify and debug functions which should be called in
// parallel on parallel matrices but which may be called in serial on
// serial matrices.  This macro will only be valid inside non-static
// PetscMatrix methods
#undef semiparallel_only
#ifndef NDEBUG
#include <cstring>
 
#define semiparallel_only() do { if (this->initialized()) { const char * mytype; \
      MatGetType(_mat,&mytype);                                         \
      if (!strcmp(mytype, MATSEQAIJ))                                   \
        parallel_object_only(); } } while (0)
#else
#define semiparallel_only()
#endif
 
 
// Petsc include files.
#ifdef I
# define LIBMESH_SAW_I
#endif
#include <petscmat.h>
#ifndef LIBMESH_SAW_I
# undef I // Avoid complex.h contamination
#endif
 
 
 
namespace libMesh
{
 
// Forward Declarations
template <typename T> class DenseMatrix;
 
enum PetscMatrixType : int {
                 AIJ=0,
                 HYPRE};
 
 
template <typename T>
class PetscMatrix final : public SparseMatrix<T>
{
public:
  explicit
  PetscMatrix (const Parallel::Communicator & comm_in);
 
  explicit
  PetscMatrix (Mat m,
               const Parallel::Communicator & comm_in);
 
  PetscMatrix (PetscMatrix &&) = delete;
  PetscMatrix (const PetscMatrix &) = delete;
  PetscMatrix & operator= (const PetscMatrix &) = delete;
  PetscMatrix & operator= (PetscMatrix &&) = delete;
  virtual ~PetscMatrix ();
 
  void set_matrix_type(PetscMatrixType mat_type);
 
  virtual void init (const numeric_index_type m,
                     const numeric_index_type n,
                     const numeric_index_type m_l,
                     const numeric_index_type n_l,
                     const numeric_index_type nnz=30,
                     const numeric_index_type noz=10,
                     const numeric_index_type blocksize=1) override;
 
  void init (const numeric_index_type m,
             const numeric_index_type n,
             const numeric_index_type m_l,
             const numeric_index_type n_l,
             const std::vector<numeric_index_type> & n_nz,
             const std::vector<numeric_index_type> & n_oz,
             const numeric_index_type blocksize=1);
 
  virtual void init () override;
 
  void update_preallocation_and_zero();
 
  void reset_preallocation();
 
  virtual void clear () override;
 
  virtual void zero () override;
 
  virtual void zero_rows (std::vector<numeric_index_type> & rows, T diag_value = 0.0) override;
 
  virtual void close () override;
 
  virtual void flush () override;
 
  virtual numeric_index_type m () const override;
 
  numeric_index_type local_m () const final;
 
  virtual numeric_index_type n () const override;
 
  numeric_index_type local_n () const;
 
  void get_local_size (numeric_index_type & m, numeric_index_type & n) const;
 
  virtual numeric_index_type row_start () const override;
 
  virtual numeric_index_type row_stop () const override;
 
  virtual void set (const numeric_index_type i,
                    const numeric_index_type j,
                    const T value) override;
 
  virtual void add (const numeric_index_type i,
                    const numeric_index_type j,
                    const T value) override;
 
  virtual void add_matrix (const DenseMatrix<T> & dm,
                           const std::vector<numeric_index_type> & rows,
                           const std::vector<numeric_index_type> & cols) override;
 
  virtual void add_matrix (const DenseMatrix<T> & dm,
                           const std::vector<numeric_index_type> & dof_indices) override;
 
  virtual void add_block_matrix (const DenseMatrix<T> & dm,
                                 const std::vector<numeric_index_type> & brows,
                                 const std::vector<numeric_index_type> & bcols) override;
 
  virtual void add_block_matrix (const DenseMatrix<T> & dm,
                                 const std::vector<numeric_index_type> & dof_indices) override
  { this->add_block_matrix (dm, dof_indices, dof_indices); }
 
  virtual void add (const T a, const SparseMatrix<T> & X) override;
 
  virtual T operator () (const numeric_index_type i,
                         const numeric_index_type j) const override;
 
  virtual Real l1_norm () const override;
 
  virtual Real linfty_norm () const override;
 
  virtual bool closed() const override;
 
  virtual void set_destroy_mat_on_exit(bool destroy = true);
 
  virtual void print_personal(std::ostream & os=libMesh::out) const override;
 
  virtual void print_matlab(const std::string & name = "") const override;
 
  virtual void get_diagonal (NumericVector<T> & dest) const override;
 
  virtual void get_transpose (SparseMatrix<T> & dest) const override;
 
  void swap (PetscMatrix<T> &);
 
  Mat mat () { libmesh_assert (_mat); return _mat; }
 
  void get_row(numeric_index_type i,
               std::vector<numeric_index_type> & indices,
               std::vector<T> & values) const override;
protected:
 
  virtual void _get_submatrix(SparseMatrix<T> & submatrix,
                              const std::vector<numeric_index_type> & rows,
                              const std::vector<numeric_index_type> & cols,
                              const bool reuse_submatrix) const override;
 
private:
 
  Mat _mat;
 
  bool _destroy_mat_on_exit;
 
  PetscMatrixType _mat_type;
 
#ifdef LIBMESH_HAVE_CXX11_THREAD
  mutable std::mutex _petsc_matrix_mutex;
#else
  mutable Threads::spin_mutex _petsc_matrix_mutex;
#endif
};
 
} // namespace libMesh
 
#endif // #ifdef LIBMESH_HAVE_PETSC
#endif // LIBMESH_PETSC_MATRIX_H