diff_system.C

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// The libMesh Finite Element Library.
// Copyright (C) 2002-2019 Benjamin S. Kirk, John W. Peterson, Roy H. Stogner
 
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
// version 2.1 of the License, or (at your option) any later version.
 
// This library is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
// Lesser General Public License for more details.
 
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
 
 
#include "libmesh/diff_solver.h"
#include "libmesh/diff_system.h"
#include "libmesh/time_solver.h"
#include "libmesh/unsteady_solver.h"
#include "libmesh/dirichlet_boundaries.h"
#include "libmesh/dof_map.h"
#include "libmesh/zero_function.h"
 
#include <utility> // std::swap
 
namespace libMesh
{
 
 
 
DifferentiableSystem::DifferentiableSystem(EquationSystems & es,
                                           const std::string & name_in,
                                           const unsigned int number_in) :
  Parent      (es, name_in, number_in),
  time_solver (),
  deltat(1.),
  print_solution_norms(false),
  print_solutions(false),
  print_residual_norms(false),
  print_residuals(false),
  print_jacobian_norms(false),
  print_jacobians(false),
  print_element_solutions(false),
  print_element_residuals(false),
  print_element_jacobians(false),
  _diff_physics(this),
  diff_qoi(this)
{
}
 
 
 
DifferentiableSystem::~DifferentiableSystem ()
{
  // If we had an attached Physics object, delete it.
  if (this->_diff_physics != this)
    delete this->_diff_physics;
 
  // If we had an attached QoI object, delete it.
  if (this->diff_qoi != this)
    delete this->diff_qoi;
}
 
 
 
void DifferentiableSystem::clear ()
{
  // If we had an attached Physics object, delete it.
  if (this->_diff_physics != this)
    {
      delete this->_diff_physics;
      this->_diff_physics = this;
    }
  // If we had no attached Physics object, clear our own Physics data
  else
    this->clear_physics();
 
  // If we had an attached QoI object, delete it.
  if (this->diff_qoi != this)
    {
      delete this->diff_qoi;
      this->diff_qoi = this;
    }
  // If we had no attached QoI object, clear our own QoI data
  else
    this->clear_qoi();
 
  use_fixed_solution = false;
}
 
 
 
void DifferentiableSystem::reinit ()
{
  Parent::reinit();
 
  libmesh_assert(time_solver.get());
  libmesh_assert_equal_to (&(time_solver->system()), this);
 
  time_solver->reinit();
}
 
 
 
void DifferentiableSystem::init_data ()
{
  // If it isn't a separate initialized-upon-attachment object, do any
  // initialization our physics needs.
  if (this->_diff_physics == this)
    this->init_physics(*this);
 
  // Do any initialization our solvers need
  libmesh_assert(time_solver.get());
  libmesh_assert_equal_to (&(time_solver->system()), this);
 
  // Now check for second order variables and add their velocities to the System.
  if (!time_solver->is_steady())
    {
      const UnsteadySolver & unsteady_solver =
        cast_ref<const UnsteadySolver &>(*(time_solver.get()));
 
      if (unsteady_solver.time_order() == 1)
        this->add_second_order_dot_vars();
    }
 
  time_solver->init();
 
  // Next initialize ImplicitSystem data
  Parent::init_data();
 
  time_solver->init_data();
}
 
std::unique_ptr<DiffContext> DifferentiableSystem::build_context ()
{
  DiffContext * context = new DiffContext(*this);
  context->set_deltat_pointer( &this->deltat );
  return std::unique_ptr<DiffContext>(context);
}
 
 
void DifferentiableSystem::assemble ()
{
  this->assembly(true, true);
}
 
 
 
void DifferentiableSystem::solve ()
{
  // Get the time solver object associated with the system, and tell it that
  // we are not solving the adjoint problem
  this->get_time_solver().set_is_adjoint(false);
 
  libmesh_assert_equal_to (&(time_solver->system()), this);
  time_solver->solve();
}
 
 
 
std::pair<unsigned int, Real> DifferentiableSystem::adjoint_solve (const QoISet & qoi_indices)
{
  // Get the time solver object associated with the system, and tell it that
  // we are solving the adjoint problem
  this->get_time_solver().set_is_adjoint(true);
 
  return this->ImplicitSystem::adjoint_solve(qoi_indices);
}
 
 
 
LinearSolver<Number> * DifferentiableSystem::get_linear_solver() const
{
  libmesh_assert(time_solver.get());
  libmesh_assert_equal_to (&(time_solver->system()), this);
  return this->time_solver->linear_solver().get();
}
 
 
 
std::pair<unsigned int, Real> DifferentiableSystem::get_linear_solve_parameters() const
{
  libmesh_assert(time_solver.get());
  libmesh_assert_equal_to (&(time_solver->system()), this);
  return std::make_pair(this->time_solver->diff_solver()->max_linear_iterations,
                        this->time_solver->diff_solver()->relative_residual_tolerance);
}
 
 
 
void DifferentiableSystem::release_linear_solver(LinearSolver<Number> *) const
{
}
 
void DifferentiableSystem::add_second_order_dot_vars()
{
  const std::set<unsigned int> & second_order_vars = this->get_second_order_vars();
  if (!second_order_vars.empty())
    {
      for (const auto & var_id : second_order_vars)
        {
          const Variable & var = this->variable(var_id);
          std::string new_var_name = std::string("dot_")+var.name();
 
          unsigned int v_var_idx;
 
          if (var.active_subdomains().empty())
            v_var_idx = this->add_variable( new_var_name, var.type() );
          else
            v_var_idx = this->add_variable( new_var_name, var.type(), &var.active_subdomains() );
 
          _second_order_dot_vars.insert(std::pair<unsigned int, unsigned int>(var_id, v_var_idx));
 
          // The new velocities are time evolving variables of first order
          this->time_evolving( v_var_idx, 1 );
 
#ifdef LIBMESH_ENABLE_DIRICHLET
          // And if there are any boundary conditions set on the second order
          // variable, we also need to set it on its velocity variable.
          this->add_dot_var_dirichlet_bcs(var_id, v_var_idx);
#endif
        }
    }
}
 
#ifdef LIBMESH_ENABLE_DIRICHLET
void DifferentiableSystem::add_dot_var_dirichlet_bcs( unsigned int var_idx,
                                                      unsigned int dot_var_idx )
{
  // We're assuming that there could be a lot more variables than
  // boundary conditions, so we search each of the boundary conditions
  // for this variable rather than looping over boundary conditions
  // in a separate loop and searching through all the variables.
  const DirichletBoundaries * all_dbcs =
    this->get_dof_map().get_dirichlet_boundaries();
 
  if (all_dbcs)
    {
      // We need to cache the DBCs to be added so that we add them
      // after looping over the existing DBCs. Otherwise, we're polluting
      // the thing we're looping over.
      std::vector<DirichletBoundary *> new_dbcs;
 
      for (const auto & dbc : *all_dbcs)
        {
          libmesh_assert(dbc);
 
          // Look for second order variable in the current
          // DirichletBoundary object
          std::vector<unsigned int>::const_iterator dbc_var_it =
            std::find( dbc->variables.begin(), dbc->variables.end(), var_idx );
 
          // If we found it, then we also need to add it's corresponding
          // "dot" variable to a DirichletBoundary
          std::vector<unsigned int> vars_to_add;
          if (dbc_var_it != dbc->variables.end())
            vars_to_add.push_back(dot_var_idx);
 
          if (!vars_to_add.empty())
            {
              // We need to check if the boundary condition is time-dependent.
              // Currently, we cannot automatically differentiate w.r.t. time
              // so if the user supplies a time-dependent Dirichlet BC, then
              // we can't automatically support the Dirichlet BC for the
              // "velocity" boundary condition, so we error. Otherwise,
              // the "velocity boundary condition will just be zero.
              bool is_time_evolving_bc = false;
              if (dbc->f)
                is_time_evolving_bc = dbc->f->is_time_dependent();
              else if (dbc->f_fem)
                // We it's a FEMFunctionBase object, it will be implicitly
                // time-dependent since it is assumed to depend on the solution.
                is_time_evolving_bc = true;
              else
                libmesh_error_msg("Could not find valid boundary function!");
 
              if (is_time_evolving_bc)
                libmesh_error_msg("Cannot currently support time-dependent Dirichlet BC for dot variables!");
 
 
              DirichletBoundary * new_dbc;
 
              if (dbc->f)
                {
                  ZeroFunction<Number> zf;
 
                  new_dbc = new DirichletBoundary(dbc->b, vars_to_add, zf);
                }
              else
                libmesh_error();
 
              new_dbcs.push_back(new_dbc);
            }
        }
 
      // Let the DofMap make its own deep copy of the DirichletBC objects and delete our copy.
      for (const auto & dbc : new_dbcs)
        {
          this->get_dof_map().add_dirichlet_boundary(*dbc);
          delete dbc;
        }
 
    } // if (all_dbcs)
}
#endif // LIBMESH_ENABLE_DIRICHLET
 
unsigned int DifferentiableSystem::get_second_order_dot_var( unsigned int var ) const
{
  // For SteadySolver or SecondOrderUnsteadySolvers, we just give back var
  unsigned int dot_var = var;
 
  if (!time_solver->is_steady())
    {
      const UnsteadySolver & unsteady_solver =
        cast_ref<const UnsteadySolver &>(*(time_solver.get()));
 
      if (unsteady_solver.time_order() == 1)
        dot_var = this->_second_order_dot_vars.find(var)->second;
    }
 
  return dot_var;
}
 
bool DifferentiableSystem::have_first_order_scalar_vars() const
{
  bool have_first_order_scalar_vars = false;
 
  if (this->have_first_order_vars())
    for (const auto & var : this->get_first_order_vars())
      if (this->variable(var).type().family == SCALAR)
        have_first_order_scalar_vars = true;
 
  return have_first_order_scalar_vars;
}
 
bool DifferentiableSystem::have_second_order_scalar_vars() const
{
  bool have_second_order_scalar_vars = false;
 
  if (this->have_second_order_vars())
    for (const auto & var : this->get_second_order_vars())
      if (this->variable(var).type().family == SCALAR)
        have_second_order_scalar_vars = true;
 
  return have_second_order_scalar_vars;
}
 
 
 
void DifferentiableSystem::swap_physics ( DifferentiablePhysics * & swap_physics )
{
  std::swap(this->_diff_physics, swap_physics);
}
 
 
} // namespace libMesh