PorousFlowFullySaturatedDarcyBase

Darcy flux suitable for models involving a fully-saturated, single phase, single component fluid. No upwinding is used

Describes the differential term $var element = document.getElementById("moose-equation-3aa5247b-7c60-4bae-a3ee-27ba6fb7e40a");katex.render("-\\nabla\\cdot ((\\rho)k(\\nabla P - \\rho \\mathbf{g})/\\mu) \\ .", element, {displayMode:true,throwOnError:false,macros:{"\\eqc":"\\,,","\\eqp":"\\,.","\\pd":"\\frac{\\partial #1}{\\partial #2}","\\pr":"\\left(#1\\right)","\\ddt":"\\frac{d #1}{d t}"}});$ The nomenclature is described here. This is fully-saturated, single-component, single-phase Darcy flow.

The multiplication by $var element = document.getElementById("moose-equation-4cf5ff00-7f47-452c-b6c1-b21f73a87cb8");katex.render("\\rho", element, {displayMode:false,throwOnError:false,macros:{"\\eqc":"\\,,","\\eqp":"\\,.","\\pd":"\\frac{\\partial #1}{\\partial #2}","\\pr":"\\left(#1\\right)","\\ddt":"\\frac{d #1}{d t}"}});$ is optional: this is indicated by the parentheses. The reason for this is that the time-derivative part described by PorousFlowFullySaturatedMassTimeDerivative linearises if the total differential equation is not multiplied by density. Please see that page for a full description of the effects of not multiplying by density.

note

No upwinding is performed, which means many nodal Material properties are not needed and numerical diffusion is reduced. However, the numerics are less well controlled: the whole point of full upwinding is to prevent over-shoots and under-shoots. Other Kernels implement Kuzmin-Turek TVD stabilization.

Input Parameters

PorousFlowDictatorThe UserObject that holds the list of PorousFlow variable names
C++ Type:UserObjectName
Unit:(no unit assumed)
Controllable:No
Description:The UserObject that holds the list of PorousFlow variable names
gravityGravitational acceleration vector downwards (m/s^2)
C++ Type:libMesh::VectorValue<double>
Unit:(no unit assumed)
Controllable:No
Description:Gravitational acceleration vector downwards (m/s^2)
variableThe name of the variable that this residual object operates on
C++ Type:NonlinearVariableName
Unit:(no unit assumed)
Controllable:No
Description:The name of the variable that this residual object operates on

Required Parameters

blockThe list of blocks (ids or names) that this object will be applied
C++ Type:std::vector<SubdomainName>
Unit:(no unit assumed)
Controllable:No
Description:The list of blocks (ids or names) that this object will be applied
displacementsThe displacements
C++ Type:std::vector<VariableName>
Unit:(no unit assumed)
Controllable:No
Description:The displacements
multiply_by_densityTrueIf true, then this Kernel is the fluid mass flux. If false, then this Kernel is the fluid volume flux (which is common in poro-mechanics)
Default:True
C++ Type:bool
Unit:(no unit assumed)
Controllable:No
Description:If true, then this Kernel is the fluid mass flux. If false, then this Kernel is the fluid volume flux (which is common in poro-mechanics)
prop_getter_suffixAn optional suffix parameter that can be appended to any attempt to retrieve/get material properties. The suffix will be prepended with a '_' character.
C++ Type:MaterialPropertyName
Unit:(no unit assumed)
Controllable:No
Description:An optional suffix parameter that can be appended to any attempt to retrieve/get material properties. The suffix will be prepended with a '_' character.
use_interpolated_stateFalseFor the old and older state use projected material properties interpolated at the quadrature points. To set up projection use the ProjectedStatefulMaterialStorageAction.
Default:False
C++ Type:bool
Unit:(no unit assumed)
Controllable:No
Description:For the old and older state use projected material properties interpolated at the quadrature points. To set up projection use the ProjectedStatefulMaterialStorageAction.

Optional Parameters

absolute_value_vector_tagsThe tags for the vectors this residual object should fill with the absolute value of the residual contribution
C++ Type:std::vector<TagName>
Unit:(no unit assumed)
Controllable:No
Description:The tags for the vectors this residual object should fill with the absolute value of the residual contribution
extra_matrix_tagsThe extra tags for the matrices this Kernel should fill
C++ Type:std::vector<TagName>
Unit:(no unit assumed)
Controllable:No
Description:The extra tags for the matrices this Kernel should fill
extra_vector_tagsThe extra tags for the vectors this Kernel should fill
C++ Type:std::vector<TagName>
Unit:(no unit assumed)
Controllable:No
Description:The extra tags for the vectors this Kernel should fill
matrix_tagssystemThe tag for the matrices this Kernel should fill
Default:system
C++ Type:MultiMooseEnum
Unit:(no unit assumed)
Options:nontime, system
Controllable:No
Description:The tag for the matrices this Kernel should fill
vector_tagsnontimeThe tag for the vectors this Kernel should fill
Default:nontime
C++ Type:MultiMooseEnum
Unit:(no unit assumed)
Options:nontime, time
Controllable:No
Description:The tag for the vectors this Kernel should fill

Tagging Parameters

control_tagsAdds user-defined labels for accessing object parameters via control logic.
C++ Type:std::vector<std::string>
Unit:(no unit assumed)
Controllable:No
Description:Adds user-defined labels for accessing object parameters via control logic.
diag_save_inThe name of auxiliary variables to save this Kernel's diagonal Jacobian contributions to. Everything about that variable must match everything about this variable (the type, what blocks it's on, etc.)
C++ Type:std::vector<AuxVariableName>
Unit:(no unit assumed)
Controllable:No
Description:The name of auxiliary variables to save this Kernel's diagonal Jacobian contributions to. Everything about that variable must match everything about this variable (the type, what blocks it's on, etc.)
enableTrueSet the enabled status of the MooseObject.
Default:True
C++ Type:bool
Unit:(no unit assumed)
Controllable:Yes
Description:Set the enabled status of the MooseObject.
implicitTrueDetermines whether this object is calculated using an implicit or explicit form
Default:True
C++ Type:bool
Unit:(no unit assumed)
Controllable:No
Description:Determines whether this object is calculated using an implicit or explicit form
save_inThe name of auxiliary variables to save this Kernel's residual contributions to. Everything about that variable must match everything about this variable (the type, what blocks it's on, etc.)
C++ Type:std::vector<AuxVariableName>
Unit:(no unit assumed)
Controllable:No
Description:The name of auxiliary variables to save this Kernel's residual contributions to. Everything about that variable must match everything about this variable (the type, what blocks it's on, etc.)
seed0The seed for the master random number generator
Default:0
C++ Type:unsigned int
Unit:(no unit assumed)
Controllable:No
Description:The seed for the master random number generator
use_displaced_meshFalseWhether or not this object should use the displaced mesh for computation. Note that in the case this is true but no displacements are provided in the Mesh block the undisplaced mesh will still be used.
Default:False
C++ Type:bool
Unit:(no unit assumed)
Controllable:No
Description:Whether or not this object should use the displaced mesh for computation. Note that in the case this is true but no displacements are provided in the Mesh block the undisplaced mesh will still be used.

Advanced Parameters

Input Files

(modules/porous_flow/test/tests/poro_elasticity/mandel_fully_saturated_volume.i)
(modules/porous_flow/test/tests/gravity/fully_saturated_grav01a.i)
(modules/porous_flow/test/tests/poro_elasticity/terzaghi_fully_saturated_volume.i)
(modules/porous_flow/test/tests/gravity/fully_saturated_grav01b.i)
(modules/porous_flow/test/tests/heat_advection/heat_advection_1d_fully_saturated.i)
(modules/porous_flow/test/tests/pressure_pulse/pressure_pulse_1d_fully_saturated_2.i)
(modules/porous_flow/test/tests/poro_elasticity/mandel_fully_saturated.i)
(modules/porous_flow/test/tests/pressure_pulse/pressure_pulse_1d_fully_saturated.i)

Child Objects

(modules/porous_flow/include/kernels/PorousFlowFullySaturatedDarcyFlow.h)
(modules/porous_flow/include/kernels/PorousFlowFullySaturatedHeatAdvection.h)

References

No citations exist within this document.

(modules/porous_flow/test/tests/poro_elasticity/mandel_fully_saturated_volume.i)

# Mandel's problem of consolodation of a drained medium
# Using the FullySaturatedDarcyBase and FullySaturatedFullySaturatedMassTimeDerivative kernels
# with multiply_by_density = false, so that this problem becomes linear
#
# A sample is in plane strain.
# -a <= x <= a
# -b <= y <= b
# It is squashed with constant force by impermeable, frictionless plattens on its top and bottom surfaces (at y=+/-b)
# Fluid is allowed to leak out from its sides (at x=+/-a)
# The porepressure within the sample is monitored.
#
# As is common in the literature, this is simulated by
# considering the quarter-sample, 0<=x<=a and 0<=y<=b, with
# impermeable, roller BCs at x=0 and y=0 and y=b.
# Porepressure is fixed at zero on x=a.
# Porepressure and displacement are initialised to zero.
# Then the top (y=b) is moved downwards with prescribed velocity,
# so that the total force that is inducing this downwards velocity
# is fixed.  The velocity is worked out by solving Mandel's problem
# analytically, and the total force is monitored in the simulation
# to check that it indeed remains constant.
#
# Here are the problem's parameters, and their values:
# Soil width.  a = 1
# Soil height.  b = 0.1
# Soil's Lame lambda.  la = 0.5
# Soil's Lame mu, which is also the Soil's shear modulus.  mu = G = 0.75
# Soil bulk modulus.  K = la + 2*mu/3 = 1
# Drained Poisson ratio.  nu = (3K - 2G)/(6K + 2G) = 0.2
# Soil bulk compliance.  1/K = 1
# Fluid bulk modulus.  Kf = 8
# Fluid bulk compliance.  1/Kf = 0.125
# Soil initial porosity.  phi0 = 0.1
# Biot coefficient.  alpha = 0.6
# Biot modulus.  M = 1/(phi0/Kf + (alpha - phi0)(1 - alpha)/K) = 4.705882
# Undrained bulk modulus. Ku = K + alpha^2*M = 2.694118
# Undrained Poisson ratio.  nuu = (3Ku - 2G)/(6Ku + 2G) = 0.372627
# Skempton coefficient.  B = alpha*M/Ku = 1.048035
# Fluid mobility (soil permeability/fluid viscosity).  k = 1.5
# Consolidation coefficient.  c = 2*k*B^2*G*(1-nu)*(1+nuu)^2/9/(1-nuu)/(nuu-nu) = 3.821656
# Normal stress on top.  F = 1
#
# The solution for porepressure and displacements is given in
# AHD Cheng and E Detournay "A direct boundary element method for plane strain poroelasticity" International Journal of Numerical and Analytical Methods in Geomechanics 12 (1988) 551-572.
# The solution involves complicated infinite series, so I shall not write it here

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 10
  ny = 1
  nz = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 0.1
  zmin = 0
  zmax = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
  block = 0
[]

[UserObjects]
  [dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure disp_x disp_y disp_z'
    number_fluid_phases = 1
    number_fluid_components = 1
  []
[]

[Variables]
  [disp_x]
  []
  [disp_y]
  []
  [disp_z]
  []
  [porepressure]
  []
[]

[BCs]
  [roller_xmin]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left'
  []
  [roller_ymin]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom'
  []
  [plane_strain]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'back front'
  []
  [xmax_drained]
    type = DirichletBC
    variable = porepressure
    value = 0
    boundary = right
  []
  [top_velocity]
    type = FunctionDirichletBC
    variable = disp_y
    function = top_velocity
    boundary = top
  []
[]

[Functions]
  [top_velocity]
    type = PiecewiseLinear
    x = '0 0.002 0.006   0.014   0.03    0.046   0.062   0.078   0.094   0.11    0.126   0.142   0.158   0.174   0.19 0.206 0.222 0.238 0.254 0.27 0.286 0.302 0.318 0.334 0.35 0.366 0.382 0.398 0.414 0.43 0.446 0.462 0.478 0.494 0.51 0.526 0.542 0.558 0.574 0.59 0.606 0.622 0.638 0.654 0.67 0.686 0.702'
    y = '-0.041824842    -0.042730269    -0.043412712    -0.04428867     -0.045509181    -0.04645965     -0.047268246 -0.047974749      -0.048597109     -0.0491467  -0.049632388     -0.050061697      -0.050441198     -0.050776675     -0.051073238      -0.0513354 -0.051567152      -0.051772022     -0.051953128 -0.052113227 -0.052254754 -0.052379865 -0.052490464 -0.052588233 -0.052674662 -0.052751065 -0.052818606 -0.052878312 -0.052931093 -0.052977751 -0.053018997 -0.053055459 -0.053087691 -0.053116185 -0.053141373 -0.05316364 -0.053183324 -0.053200724 -0.053216106 -0.053229704 -0.053241725 -0.053252351 -0.053261745 -0.053270049 -0.053277389 -0.053283879 -0.053289615'
  []
[]

[AuxVariables]
  [stress_yy]
    order = CONSTANT
    family = MONOMIAL
  []
  [tot_force]
    order = CONSTANT
    family = MONOMIAL
  []
[]

[AuxKernels]
  [stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  []
  [tot_force]
    type = ParsedAux
    coupled_variables = 'stress_yy porepressure'
    execute_on = timestep_end
    variable = tot_force
    expression = '-stress_yy+0.6*porepressure'
  []
[]

[Kernels]
  [grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  []
  [grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  []
  [grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  []
  [poro_x]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.6
    variable = disp_x
    component = 0
  []
  [poro_y]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.6
    variable = disp_y
    component = 1
  []
  [poro_z]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.6
    component = 2
    variable = disp_z
  []
  [mass0]
    type = PorousFlowFullySaturatedMassTimeDerivative
    biot_coefficient = 0.6
    multiply_by_density = false
    coupling_type = HydroMechanical
    variable = porepressure
  []
  [flux]
    type = PorousFlowFullySaturatedDarcyBase
    multiply_by_density = false
    variable = porepressure
    gravity = '0 0 0'
  []
[]

[FluidProperties]
  [simple_fluid]
    type = SimpleFluidProperties
    bulk_modulus = 8
    density0 = 1
    thermal_expansion = 0
    viscosity = 1
  []
[]

[Materials]
  [temperature]
    type = PorousFlowTemperature
  []
  [elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '0.5 0.75'
    # bulk modulus is lambda + 2*mu/3 = 0.5 + 2*0.75/3 = 1
    fill_method = symmetric_isotropic
  []
  [strain]
    type = ComputeSmallStrain
  []
  [stress]
    type = ComputeLinearElasticStress
  []
  [eff_fluid_pressure_qp]
    type = PorousFlowEffectiveFluidPressure
  []
  [vol_strain]
    type = PorousFlowVolumetricStrain
  []
  [ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = porepressure
  []
  [massfrac]
    type = PorousFlowMassFraction
  []
  [simple_fluid_qp]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  []
  [porosity]
    type = PorousFlowPorosityConst # only the initial value of this is ever used
    porosity = 0.1
  []
  [biot_modulus]
    type = PorousFlowConstantBiotModulus
    biot_coefficient = 0.6
    solid_bulk_compliance = 1
    fluid_bulk_modulus = 8
  []
  [permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1.5 0 0   0 1.5 0   0 0 1.5'
  []
[]

[Postprocessors]
  [p0]
    type = PointValue
    outputs = csv
    point = '0.0 0 0'
    variable = porepressure
  []
  [p1]
    type = PointValue
    outputs = csv
    point = '0.1 0 0'
    variable = porepressure
  []
  [p2]
    type = PointValue
    outputs = csv
    point = '0.2 0 0'
    variable = porepressure
  []
  [p3]
    type = PointValue
    outputs = csv
    point = '0.3 0 0'
    variable = porepressure
  []
  [p4]
    type = PointValue
    outputs = csv
    point = '0.4 0 0'
    variable = porepressure
  []
  [p5]
    type = PointValue
    outputs = csv
    point = '0.5 0 0'
    variable = porepressure
  []
  [p6]
    type = PointValue
    outputs = csv
    point = '0.6 0 0'
    variable = porepressure
  []
  [p7]
    type = PointValue
    outputs = csv
    point = '0.7 0 0'
    variable = porepressure
  []
  [p8]
    type = PointValue
    outputs = csv
    point = '0.8 0 0'
    variable = porepressure
  []
  [p9]
    type = PointValue
    outputs = csv
    point = '0.9 0 0'
    variable = porepressure
  []
  [p99]
    type = PointValue
    outputs = csv
    point = '1 0 0'
    variable = porepressure
  []
  [xdisp]
    type = PointValue
    outputs = csv
    point = '1 0.1 0'
    variable = disp_x
  []
  [ydisp]
    type = PointValue
    outputs = csv
    point = '1 0.1 0'
    variable = disp_y
  []
  [total_downwards_force]
     type = ElementAverageValue
     outputs = csv
     variable = tot_force
  []
  [dt]
    type = FunctionValuePostprocessor
    outputs = console
    function = if(0.15*t<0.01,0.15*t,0.01)
  []
[]

[Preconditioning]
  [andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'gmres asm lu 1E-14 1E-10 10000'
  []
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  end_time = 0.7
  [TimeStepper]
    type = PostprocessorDT
    postprocessor = dt
    dt = 0.001
  []
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = mandel_fully_saturated_volume
  [csv]
    time_step_interval = 3
    type = CSV
  []
[]

(modules/porous_flow/test/tests/gravity/fully_saturated_grav01a.i)

# Checking that gravity head is established
# 1phase, constant fluid-bulk, constant viscosity, constant permeability
# fully saturated
# For better agreement with the analytical solution (ana_pp), just increase nx

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 100
  xmin = -1
  xmax = 0
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [pp]
    [InitialCondition]
      type = RandomIC
      min = 0
      max = 1
    []
  []
[]

[Kernels]
  [flux0]
    type = PorousFlowFullySaturatedDarcyBase
    variable = pp
    gravity = '-1 0 0'
  []
[]

[Functions]
  [ana_pp]
    type = ParsedFunction
    symbol_names = 'g B p0 rho0'
    symbol_values = '1 1.2 0 1'
    expression = '-B*log(exp(-p0/B)+g*rho0*x/B)' # expected pp at base
  []
[]

[BCs]
  [z]
    type = DirichletBC
    variable = pp
    boundary = right
    value = 0
  []
[]

[UserObjects]
  [dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  []
[]

[FluidProperties]
  [simple_fluid]
    type = SimpleFluidProperties
    bulk_modulus = 1.2
    density0 = 1
    viscosity = 1
    thermal_expansion = 0
  []
[]

[Materials]
  [temperature]
    type = PorousFlowTemperature
  []
  [ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pp
  []
  [massfrac]
    type = PorousFlowMassFraction
  []
  [simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  []
  [permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0  0 2 0  0 0 3'
  []
[]

[Postprocessors]
  [pp_base]
    type = PointValue
    variable = pp
    point = '-1 0 0'
  []
  [pp_analytical]
    type = FunctionValuePostprocessor
    function = ana_pp
    point = '-1 0 0'
  []
[]

[Preconditioning]
  [andy]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Steady
  solve_type = Newton
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = fully_saturated_grav01a
  [csv]
    type = CSV
  []
[]

(modules/porous_flow/test/tests/poro_elasticity/terzaghi_fully_saturated_volume.i)

# Terzaghi's problem of consolodation of a drained medium
# The FullySaturated Kernels are used, with multiply_by_density = false
# so that this becomes a linear problem with constant Biot Modulus
#
# A saturated soil sample sits in a bath of water.
# It is constrained on its sides, and bottom.
# Its sides and bottom are also impermeable.
# Initially it is unstressed.
# A normal stress, q, is applied to the soil's top.
# The soil then slowly compresses as water is squeezed
# out from the sample from its top (the top BC for
# the porepressure is porepressure = 0).
#
# See, for example.  Section 2.2 of the online manuscript
# Arnold Verruijt "Theory and Problems of Poroelasticity" Delft University of Technology 2013
# but note that the "sigma" in that paper is the negative
# of the stress in TensorMechanics
#
# Here are the problem's parameters, and their values:
# Soil height.  h = 10
# Soil's Lame lambda.  la = 2
# Soil's Lame mu, which is also the Soil's shear modulus.  mu = 3
# Soil bulk modulus.  K = la + 2*mu/3 = 4
# Soil confined compressibility.  m = 1/(K + 4mu/3) = 0.125
# Soil bulk compliance.  1/K = 0.25
# Fluid bulk modulus.  Kf = 8
# Fluid bulk compliance.  1/Kf = 0.125
# Fluid mobility (soil permeability/fluid viscosity).  k = 1.5
# Soil initial porosity.  phi0 = 0.1
# Biot coefficient.  alpha = 0.6
# Soil initial storativity, which is the reciprocal of the initial Biot modulus.  S = phi0/Kf + (alpha - phi0)(1 - alpha)/K = 0.0625
# Consolidation coefficient.  c = k/(S + alpha^2 m) = 13.95348837
# Normal stress on top.  q = 1
# Initial porepressure, resulting from instantaneous application of q, assuming corresponding instantaneous increase of porepressure (Note that this is calculated by MOOSE: we only need it for the analytical solution).  p0 = alpha*m*q/(S + alpha^2 m) = 0.69767442
# Initial vertical displacement (down is positive), resulting from instantaneous application of q (Note this is calculated by MOOSE: we only need it for the analytical solution).  uz0 = q*m*h*S/(S + alpha^2 m)
# Final vertical displacement (down in positive) (Note this is calculated by MOOSE: we only need it for the analytical solution).  uzinf = q*m*h
#
# The solution for porepressure is
# P = 4*p0/\pi \sum_{k=1}^{\infty} \frac{(-1)^{k-1}}{2k-1} \cos ((2k-1)\pi z/(2h)) \exp(-(2k-1)^2 \pi^2 ct/(4 h^2))
# This series converges very slowly for ct/h^2 small, so in that domain
# P = p0 erf( (1-(z/h))/(2 \sqrt(ct/h^2)) )
#
# The degree of consolidation is defined as
# U = (uz - uz0)/(uzinf - uz0)
# where uz0 and uzinf are defined above, and
# uz = the vertical displacement of the top (down is positive)
# U = 1 - (8/\pi^2)\sum_{k=1}^{\infty} \frac{1}{(2k-1)^2} \exp(-(2k-1)^2 \pi^2 ct/(4 h^2))

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 10
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = 0
  zmax = 10
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
  block = 0
[]

[UserObjects]
  [dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure disp_x disp_y disp_z'
    number_fluid_phases = 1
    number_fluid_components = 1
  []
[]

[Variables]
  [disp_x]
  []
  [disp_y]
  []
  [disp_z]
  []
  [porepressure]
  []
[]

[BCs]
  [confinex]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left right'
  []
  [confiney]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom top'
  []
  [basefixed]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = back
  []
  [topdrained]
    type = DirichletBC
    variable = porepressure
    value = 0
    boundary = front
  []
  [topload]
    type = NeumannBC
    variable = disp_z
    value = -1
    boundary = front
  []
[]

[Kernels]
  [grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  []
  [grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  []
  [grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  []
  [poro_x]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.6
    variable = disp_x
    component = 0
  []
  [poro_y]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.6
    variable = disp_y
    component = 1
  []
  [poro_z]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.6
    component = 2
    variable = disp_z
  []
  [mass0]
    type = PorousFlowFullySaturatedMassTimeDerivative
    coupling_type = HydroMechanical
    biot_coefficient = 0.6
    multiply_by_density = false
    variable = porepressure
  []
  [flux]
    type = PorousFlowFullySaturatedDarcyBase
    multiply_by_density = false
    variable = porepressure
    gravity = '0 0 0'
  []
[]

[FluidProperties]
  [simple_fluid]
    type = SimpleFluidProperties
    bulk_modulus = 8
    density0 = 1
    thermal_expansion = 0
    viscosity = 0.96
  []
[]

[Materials]
  [temperature]
    type = PorousFlowTemperature
  []
  [elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '2 3'
    # bulk modulus is lambda + 2*mu/3 = 2 + 2*3/3 = 4
    fill_method = symmetric_isotropic
  []
  [strain]
    type = ComputeSmallStrain
  []
  [stress]
    type = ComputeLinearElasticStress
  []
  [eff_fluid_pressure_qp]
    type = PorousFlowEffectiveFluidPressure
  []
  [vol_strain]
    type = PorousFlowVolumetricStrain
  []
  [ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = porepressure
  []
  [massfrac]
    type = PorousFlowMassFraction
  []
  [simple_fluid_qp]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  []
  [porosity]
    type = PorousFlowPorosityConst # only the initial value of this is used
    porosity = 0.1
  []
  [biot_modulus]
    type = PorousFlowConstantBiotModulus
    biot_coefficient = 0.6
    fluid_bulk_modulus = 8
    solid_bulk_compliance = 0.25
  []
  [permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1.5 0 0   0 1.5 0   0 0 1.5'
  []
[]

[Postprocessors]
  [p0]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = porepressure
    use_displaced_mesh = false
  []
  [p1]
    type = PointValue
    outputs = csv
    point = '0 0 1'
    variable = porepressure
    use_displaced_mesh = false
  []
  [p2]
    type = PointValue
    outputs = csv
    point = '0 0 2'
    variable = porepressure
    use_displaced_mesh = false
  []
  [p3]
    type = PointValue
    outputs = csv
    point = '0 0 3'
    variable = porepressure
    use_displaced_mesh = false
  []
  [p4]
    type = PointValue
    outputs = csv
    point = '0 0 4'
    variable = porepressure
    use_displaced_mesh = false
  []
  [p5]
    type = PointValue
    outputs = csv
    point = '0 0 5'
    variable = porepressure
    use_displaced_mesh = false
  []
  [p6]
    type = PointValue
    outputs = csv
    point = '0 0 6'
    variable = porepressure
    use_displaced_mesh = false
  []
  [p7]
    type = PointValue
    outputs = csv
    point = '0 0 7'
    variable = porepressure
    use_displaced_mesh = false
  []
  [p8]
    type = PointValue
    outputs = csv
    point = '0 0 8'
    variable = porepressure
    use_displaced_mesh = false
  []
  [p9]
    type = PointValue
    outputs = csv
    point = '0 0 9'
    variable = porepressure
    use_displaced_mesh = false
  []
  [p99]
    type = PointValue
    outputs = csv
    point = '0 0 10'
    variable = porepressure
    use_displaced_mesh = false
  []
  [zdisp]
    type = PointValue
    outputs = csv
    point = '0 0 10'
    variable = disp_z
    use_displaced_mesh = false
  []
  [dt]
    type = FunctionValuePostprocessor
    outputs = console
    function = if(0.5*t<0.1,0.5*t,0.1)
  []
[]

[Preconditioning]
  [andy]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  end_time = 10
  [TimeStepper]
    type = PostprocessorDT
    postprocessor = dt
    dt = 0.0001
  []
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = terzaghi_fully_saturated_volume
  [csv]
    type = CSV
  []
[]

(modules/porous_flow/test/tests/gravity/fully_saturated_grav01b.i)

# Checking that gravity head is established
# 1phase, constant and large fluid-bulk, constant viscosity, constant permeability
# fully saturated with fully-saturated Kernel
# For better agreement with the analytical solution (ana_pp), just increase nx

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 100
  xmin = -1
  xmax = 0
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [pp]
    [InitialCondition]
      type = RandomIC
      min = 0
      max = 1
    []
  []
[]

[Kernels]
  [flux0]
    type = PorousFlowFullySaturatedDarcyBase
    variable = pp
    gravity = '-1 0 0'
  []
[]

[Functions]
  [ana_pp]
    type = ParsedFunction
    symbol_names = 'g B p0 rho0'
    symbol_values = '1 1E3 0 1'
    expression = '-B*log(exp(-p0/B)+g*rho0*x/B)' # expected pp at base
  []
[]

[BCs]
  [z]
    type = DirichletBC
    variable = pp
    boundary = right
    value = 0
  []
[]

[UserObjects]
  [dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  []
[]

[FluidProperties]
  [simple_fluid]
    type = SimpleFluidProperties
    bulk_modulus = 1e3
    density0 = 1
    viscosity = 1
    thermal_expansion = 0
  []
[]

[Materials]
  [temperature]
    type = PorousFlowTemperature
  []
  [ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pp
  []
  [massfrac]
    type = PorousFlowMassFraction
  []
  [simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  []
  [permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0  0 2 0  0 0 3'
  []
[]

[Postprocessors]
  [pp_base]
    type = PointValue
    variable = pp
    point = '-1 0 0'
  []
  [pp_analytical]
    type = FunctionValuePostprocessor
    function = ana_pp
    point = '-1 0 0'
  []
[]

[Preconditioning]
  [andy]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Steady
  solve_type = Newton
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = fully_saturated_grav01b
  [csv]
    type = CSV
  []
[]

(modules/porous_flow/test/tests/heat_advection/heat_advection_1d_fully_saturated.i)

# 1phase, heat advecting with a moving fluid
# Using the FullySaturated Kernel
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 50
  xmin = 0
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [temp]
    initial_condition = 200
  []
  [pp]
  []
[]

[ICs]
  [pp]
    type = FunctionIC
    variable = pp
    function = '1-x'
  []
[]

[BCs]
  [pp0]
    type = DirichletBC
    variable = pp
    boundary = left
    value = 1
  []
  [pp1]
    type = DirichletBC
    variable = pp
    boundary = right
    value = 0
  []
  [spit_heat]
    type = DirichletBC
    variable = temp
    boundary = left
    value = 300
  []
  [suck_heat]
    type = DirichletBC
    variable = temp
    boundary = right
    value = 200
  []
[]

[Kernels]
  [mass_dot]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  []
  [advection]
    type = PorousFlowFullySaturatedDarcyBase
    variable = pp
  []
  [energy_dot]
    type = PorousFlowEnergyTimeDerivative
    variable = temp
  []
  [convection]
    type = PorousFlowFullySaturatedHeatAdvection
    variable = temp
  []
[]

[UserObjects]
  [dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'temp pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  []
[]

[FluidProperties]
  [simple_fluid]
    type = SimpleFluidProperties
    bulk_modulus = 100
    density0 = 1000
    viscosity = 4.4
    thermal_expansion = 0
    cv = 2
  []
[]

[Materials]
  [temperature]
    type = PorousFlowTemperature
    temperature = temp
  []
  [porosity]
    type = PorousFlowPorosityConst
    porosity = 0.2
  []
  [rock_heat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 1.0
    density = 125
  []
  [simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  []
  [permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1.1 0 0 0 2 0 0 0 3'
  []
  [massfrac]
    type = PorousFlowMassFraction
  []
  [PS]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pp
  []
[]

[Preconditioning]
  [andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'gmres bjacobi 1E-15 1E-10 10000'
  []
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 0.01
  end_time = 0.6
[]

[VectorPostprocessors]
  [T]
    type = LineValueSampler
    start_point = '0 0 0'
    end_point = '1 0 0'
    num_points = 51
    sort_by = x
    variable = temp
  []
[]

[Outputs]
  file_base = heat_advection_1d_fully_saturated
  [csv]
    type = CSV
    sync_times = '0.1 0.6'
    sync_only = true
  []
[]

(modules/porous_flow/test/tests/pressure_pulse/pressure_pulse_1d_fully_saturated_2.i)

# Pressure pulse in 1D with 1 phase - transient
# using the PorousFlowFullySaturatedDarcyBase Kernel
# and the PorousFlowFullySaturatedMassTimeDerivative Kernel
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 20
  xmin = 0
  xmax = 100
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [pp]
    initial_condition = 2E6
  []
[]

[Kernels]
  [mass0]
    type = PorousFlowFullySaturatedMassTimeDerivative
    variable = pp
  []
  [flux]
    type = PorousFlowFullySaturatedDarcyBase
    variable = pp
    gravity = '0 0 0'
  []
[]

[UserObjects]
  [dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  []
[]

[FluidProperties]
  [simple_fluid]
    type = SimpleFluidProperties
    bulk_modulus = 2e9
    density0 = 1000
    thermal_expansion = 0
    viscosity = 1e-3
  []
[]

[Materials]
  [temperature_qp]
    type = PorousFlowTemperature
  []
  [ppss_qp]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pp
  []
  [massfrac]
    type = PorousFlowMassFraction
  []
  [simple_fluid_qp]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  []
  [porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  []
  [biot_modulus]
    type = PorousFlowConstantBiotModulus
    fluid_bulk_modulus = 2E9
  []
  [permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-15'
  []
[]

[BCs]
  [left]
    type = DirichletBC
    boundary = left
    value = 3E6
    variable = pp
  []
[]

[Preconditioning]
  [andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-20 10000'
  []
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E3
  end_time = 1E4
[]

[Postprocessors]
  [p005]
    type = PointValue
    variable = pp
    point = '5 0 0'
    execute_on = 'initial timestep_end'
  []
  [p015]
    type = PointValue
    variable = pp
    point = '15 0 0'
    execute_on = 'initial timestep_end'
  []
  [p025]
    type = PointValue
    variable = pp
    point = '25 0 0'
    execute_on = 'initial timestep_end'
  []
  [p035]
    type = PointValue
    variable = pp
    point = '35 0 0'
    execute_on = 'initial timestep_end'
  []
  [p045]
    type = PointValue
    variable = pp
    point = '45 0 0'
    execute_on = 'initial timestep_end'
  []
  [p055]
    type = PointValue
    variable = pp
    point = '55 0 0'
    execute_on = 'initial timestep_end'
  []
  [p065]
    type = PointValue
    variable = pp
    point = '65 0 0'
    execute_on = 'initial timestep_end'
  []
  [p075]
    type = PointValue
    variable = pp
    point = '75 0 0'
    execute_on = 'initial timestep_end'
  []
  [p085]
    type = PointValue
    variable = pp
    point = '85 0 0'
    execute_on = 'initial timestep_end'
  []
  [p095]
    type = PointValue
    variable = pp
    point = '95 0 0'
    execute_on = 'initial timestep_end'
  []
[]

[Outputs]
  file_base = pressure_pulse_1d_fully_saturated_2
  print_linear_residuals = false
  csv = true
[]

(modules/porous_flow/test/tests/poro_elasticity/mandel_fully_saturated.i)

# Mandel's problem of consolodation of a drained medium
# Using the FullySaturatedDarcyBase and FullySaturatedMassTimeDerivative kernels
#
# A sample is in plane strain.
# -a <= x <= a
# -b <= y <= b
# It is squashed with constant force by impermeable, frictionless plattens on its top and bottom surfaces (at y=+/-b)
# Fluid is allowed to leak out from its sides (at x=+/-a)
# The porepressure within the sample is monitored.
#
# As is common in the literature, this is simulated by
# considering the quarter-sample, 0<=x<=a and 0<=y<=b, with
# impermeable, roller BCs at x=0 and y=0 and y=b.
# Porepressure is fixed at zero on x=a.
# Porepressure and displacement are initialised to zero.
# Then the top (y=b) is moved downwards with prescribed velocity,
# so that the total force that is inducing this downwards velocity
# is fixed.  The velocity is worked out by solving Mandel's problem
# analytically, and the total force is monitored in the simulation
# to check that it indeed remains constant.
#
# Here are the problem's parameters, and their values:
# Soil width.  a = 1
# Soil height.  b = 0.1
# Soil's Lame lambda.  la = 0.5
# Soil's Lame mu, which is also the Soil's shear modulus.  mu = G = 0.75
# Soil bulk modulus.  K = la + 2*mu/3 = 1
# Drained Poisson ratio.  nu = (3K - 2G)/(6K + 2G) = 0.2
# Soil bulk compliance.  1/K = 1
# Fluid bulk modulus.  Kf = 8
# Fluid bulk compliance.  1/Kf = 0.125
# Soil initial porosity.  phi0 = 0.1
# Biot coefficient.  alpha = 0.6
# Biot modulus.  M = 1/(phi0/Kf + (alpha - phi0)(1 - alpha)/K) = 4.705882
# Undrained bulk modulus. Ku = K + alpha^2*M = 2.694118
# Undrained Poisson ratio.  nuu = (3Ku - 2G)/(6Ku + 2G) = 0.372627
# Skempton coefficient.  B = alpha*M/Ku = 1.048035
# Fluid mobility (soil permeability/fluid viscosity).  k = 1.5
# Consolidation coefficient.  c = 2*k*B^2*G*(1-nu)*(1+nuu)^2/9/(1-nuu)/(nuu-nu) = 3.821656
# Normal stress on top.  F = 1
#
# The solution for porepressure and displacements is given in
# AHD Cheng and E Detournay "A direct boundary element method for plane strain poroelasticity" International Journal of Numerical and Analytical Methods in Geomechanics 12 (1988) 551-572.
# The solution involves complicated infinite series, so I shall not write it here

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 10
  ny = 1
  nz = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 0.1
  zmin = 0
  zmax = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
  block = 0
[]

[UserObjects]
  [dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure disp_x disp_y disp_z'
    number_fluid_phases = 1
    number_fluid_components = 1
  []
[]

[Variables]
  [disp_x]
  []
  [disp_y]
  []
  [disp_z]
  []
  [porepressure]
  []
[]

[BCs]
  [roller_xmin]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left'
  []
  [roller_ymin]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom'
  []
  [plane_strain]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'back front'
  []
  [xmax_drained]
    type = DirichletBC
    variable = porepressure
    value = 0
    boundary = right
  []
  [top_velocity]
    type = FunctionDirichletBC
    variable = disp_y
    function = top_velocity
    boundary = top
  []
[]

[Functions]
  [top_velocity]
    type = PiecewiseLinear
    x = '0 0.002 0.006   0.014   0.03    0.046   0.062   0.078   0.094   0.11    0.126   0.142   0.158   0.174   0.19 0.206 0.222 0.238 0.254 0.27 0.286 0.302 0.318 0.334 0.35 0.366 0.382 0.398 0.414 0.43 0.446 0.462 0.478 0.494 0.51 0.526 0.542 0.558 0.574 0.59 0.606 0.622 0.638 0.654 0.67 0.686 0.702'
    y = '-0.041824842    -0.042730269    -0.043412712    -0.04428867     -0.045509181    -0.04645965     -0.047268246 -0.047974749      -0.048597109     -0.0491467  -0.049632388     -0.050061697      -0.050441198     -0.050776675     -0.051073238      -0.0513354 -0.051567152      -0.051772022     -0.051953128 -0.052113227 -0.052254754 -0.052379865 -0.052490464 -0.052588233 -0.052674662 -0.052751065 -0.052818606 -0.052878312 -0.052931093 -0.052977751 -0.053018997 -0.053055459 -0.053087691 -0.053116185 -0.053141373 -0.05316364 -0.053183324 -0.053200724 -0.053216106 -0.053229704 -0.053241725 -0.053252351 -0.053261745 -0.053270049 -0.053277389 -0.053283879 -0.053289615'
  []
[]

[AuxVariables]
  [stress_yy]
    order = CONSTANT
    family = MONOMIAL
  []
  [tot_force]
    order = CONSTANT
    family = MONOMIAL
  []
[]

[AuxKernels]
  [stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  []
  [tot_force]
    type = ParsedAux
    coupled_variables = 'stress_yy porepressure'
    execute_on = timestep_end
    variable = tot_force
    expression = '-stress_yy+0.6*porepressure'
  []
[]

[Kernels]
  [grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  []
  [grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  []
  [grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  []
  [poro_x]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.6
    variable = disp_x
    component = 0
  []
  [poro_y]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.6
    variable = disp_y
    component = 1
  []
  [poro_z]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.6
    component = 2
    variable = disp_z
  []
  [mass0]
    type = PorousFlowFullySaturatedMassTimeDerivative
    biot_coefficient = 0.6
    coupling_type = HydroMechanical
    variable = porepressure
  []
  [flux]
    type = PorousFlowFullySaturatedDarcyBase
    variable = porepressure
    gravity = '0 0 0'
  []
[]

[FluidProperties]
  [simple_fluid]
    type = SimpleFluidProperties
    bulk_modulus = 8
    density0 = 1
    thermal_expansion = 0
    viscosity = 1
  []
[]

[Materials]
  [temperature]
    type = PorousFlowTemperature
  []
  [elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '0.5 0.75'
    # bulk modulus is lambda + 2*mu/3 = 0.5 + 2*0.75/3 = 1
    fill_method = symmetric_isotropic
  []
  [strain]
    type = ComputeSmallStrain
  []
  [stress]
    type = ComputeLinearElasticStress
  []
  [eff_fluid_pressure_qp]
    type = PorousFlowEffectiveFluidPressure
  []
  [vol_strain]
    type = PorousFlowVolumetricStrain
  []
  [ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = porepressure
  []
  [massfrac]
    type = PorousFlowMassFraction
  []
  [simple_fluid_qp]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  []
  [porosity]
    type = PorousFlowPorosityConst # only the initial value of this is ever used
    porosity = 0.1
  []
  [biot_modulus]
    type = PorousFlowConstantBiotModulus
    biot_coefficient = 0.6
    solid_bulk_compliance = 1
    fluid_bulk_modulus = 8
  []
  [permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1.5 0 0   0 1.5 0   0 0 1.5'
  []
[]

[Postprocessors]
  [p0]
    type = PointValue
    outputs = csv
    point = '0.0 0 0'
    variable = porepressure
  []
  [p1]
    type = PointValue
    outputs = csv
    point = '0.1 0 0'
    variable = porepressure
  []
  [p2]
    type = PointValue
    outputs = csv
    point = '0.2 0 0'
    variable = porepressure
  []
  [p3]
    type = PointValue
    outputs = csv
    point = '0.3 0 0'
    variable = porepressure
  []
  [p4]
    type = PointValue
    outputs = csv
    point = '0.4 0 0'
    variable = porepressure
  []
  [p5]
    type = PointValue
    outputs = csv
    point = '0.5 0 0'
    variable = porepressure
  []
  [p6]
    type = PointValue
    outputs = csv
    point = '0.6 0 0'
    variable = porepressure
  []
  [p7]
    type = PointValue
    outputs = csv
    point = '0.7 0 0'
    variable = porepressure
  []
  [p8]
    type = PointValue
    outputs = csv
    point = '0.8 0 0'
    variable = porepressure
  []
  [p9]
    type = PointValue
    outputs = csv
    point = '0.9 0 0'
    variable = porepressure
  []
  [p99]
    type = PointValue
    outputs = csv
    point = '1 0 0'
    variable = porepressure
  []
  [xdisp]
    type = PointValue
    outputs = csv
    point = '1 0.1 0'
    variable = disp_x
  []
  [ydisp]
    type = PointValue
    outputs = csv
    point = '1 0.1 0'
    variable = disp_y
  []
  [total_downwards_force]
     type = ElementAverageValue
     outputs = csv
     variable = tot_force
  []
  [dt]
    type = FunctionValuePostprocessor
    outputs = console
    function = if(0.15*t<0.01,0.15*t,0.01)
  []
[]

[Preconditioning]
  [andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'gmres asm lu 1E-14 1E-10 10000'
  []
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  end_time = 0.7
  [TimeStepper]
    type = PostprocessorDT
    postprocessor = dt
    dt = 0.001
  []
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = mandel_fully_saturated
  [csv]
    time_step_interval = 3
    type = CSV
  []
[]

(modules/porous_flow/test/tests/pressure_pulse/pressure_pulse_1d_fully_saturated.i)

# Pressure pulse in 1D with 1 phase - transient
# using the PorousFlowFullySaturatedDarcyBase Kernel
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 20
  xmin = 0
  xmax = 100
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [pp]
    initial_condition = 2E6
  []
[]

[Kernels]
  [mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  []
  [flux]
    type = PorousFlowFullySaturatedDarcyBase
    variable = pp
    gravity = '0 0 0'
  []
[]

[UserObjects]
  [dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  []
[]

[FluidProperties]
  [simple_fluid]
    type = SimpleFluidProperties
    bulk_modulus = 2e9
    density0 = 1000
    thermal_expansion = 0
    viscosity = 1e-3
  []
[]

[Materials]
  [temperature]
    type = PorousFlowTemperature
  []
  [ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pp
  []
  [massfrac]
    type = PorousFlowMassFraction
  []
  [simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  []
  [porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  []
  [permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-15'
  []
  [relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 0
    phase = 0
  []
[]

[BCs]
  [left]
    type = DirichletBC
    boundary = left
    value = 3E6
    variable = pp
  []
[]

[Preconditioning]
  [andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-20 10000'
  []
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E3
  end_time = 1E4
[]

[Postprocessors]
  [p005]
    type = PointValue
    variable = pp
    point = '5 0 0'
    execute_on = 'initial timestep_end'
  []
  [p015]
    type = PointValue
    variable = pp
    point = '15 0 0'
    execute_on = 'initial timestep_end'
  []
  [p025]
    type = PointValue
    variable = pp
    point = '25 0 0'
    execute_on = 'initial timestep_end'
  []
  [p035]
    type = PointValue
    variable = pp
    point = '35 0 0'
    execute_on = 'initial timestep_end'
  []
  [p045]
    type = PointValue
    variable = pp
    point = '45 0 0'
    execute_on = 'initial timestep_end'
  []
  [p055]
    type = PointValue
    variable = pp
    point = '55 0 0'
    execute_on = 'initial timestep_end'
  []
  [p065]
    type = PointValue
    variable = pp
    point = '65 0 0'
    execute_on = 'initial timestep_end'
  []
  [p075]
    type = PointValue
    variable = pp
    point = '75 0 0'
    execute_on = 'initial timestep_end'
  []
  [p085]
    type = PointValue
    variable = pp
    point = '85 0 0'
    execute_on = 'initial timestep_end'
  []
  [p095]
    type = PointValue
    variable = pp
    point = '95 0 0'
    execute_on = 'initial timestep_end'
  []
[]

[Outputs]
  file_base = pressure_pulse_1d_fully_saturated
  print_linear_residuals = false
  csv = true
[]

(modules/porous_flow/include/kernels/PorousFlowFullySaturatedDarcyFlow.h)

// This file is part of the MOOSE framework
// https://www.mooseframework.org
//
// All rights reserved, see COPYRIGHT for full restrictions
// https://github.com/idaholab/moose/blob/master/COPYRIGHT
//
// Licensed under LGPL 2.1, please see LICENSE for details
// https://www.gnu.org/licenses/lgpl-2.1.html

#pragma once

#include "PorousFlowFullySaturatedDarcyBase.h"

/**
 * Darcy advective flux for a fully-saturated,
 * single-phase, multi-component fluid.
 * No upwinding or relative-permeability is used.
 */
class PorousFlowFullySaturatedDarcyFlow : public PorousFlowFullySaturatedDarcyBase
{
public:
  static InputParameters validParams();

  PorousFlowFullySaturatedDarcyFlow(const InputParameters & parameters);

protected:
  /**
   * The mobility of the fluid = mass_fraction * density / viscosity
   */
  virtual Real mobility() const override;

  /**
   * The derivative of the mobility with respect to the PorousFlow variable pvar
   * @param pvar Take the derivative with respect to this PorousFlow variable
   */
  virtual Real dmobility(unsigned pvar) const override;

  /// mass fraction of the components in the phase
  const MaterialProperty<std::vector<std::vector<Real>>> & _mfrac;

  /// Derivative of mass fraction wrt wrt PorousFlow variables
  const MaterialProperty<std::vector<std::vector<std::vector<Real>>>> & _dmfrac_dvar;

  /// The fluid component for this Kernel
  const unsigned int _fluid_component;
};

(modules/porous_flow/include/kernels/PorousFlowFullySaturatedHeatAdvection.h)

// This file is part of the MOOSE framework
// https://www.mooseframework.org
//
// All rights reserved, see COPYRIGHT for full restrictions
// https://github.com/idaholab/moose/blob/master/COPYRIGHT
//
// Licensed under LGPL 2.1, please see LICENSE for details
// https://www.gnu.org/licenses/lgpl-2.1.html

#pragma once

#include "PorousFlowFullySaturatedDarcyBase.h"

/**
 * Advection of heat via flux via Darcy flow of a single phase
 * fully-saturated fluid.  No upwinding is used.
 */
class PorousFlowFullySaturatedHeatAdvection : public PorousFlowFullySaturatedDarcyBase
{
public:
  static InputParameters validParams();

  PorousFlowFullySaturatedHeatAdvection(const InputParameters & parameters);

protected:
  virtual Real mobility() const override;
  virtual Real dmobility(unsigned pvar) const override;

  /// Enthalpy of each phase
  const MaterialProperty<std::vector<Real>> & _enthalpy;

  /// Derivative of the enthalpy wrt PorousFlow variables
  const MaterialProperty<std::vector<std::vector<Real>>> & _denthalpy_dvar;
};

Input Parameters
Input Files
Child Objects
References