Citing MOOSE

Navier-Stokes

The following document summarizes the main capabilities available in the Navier-Stokes module:

@article{lindsay2023moose,
  title={MOOSE Navier--Stokes module},
  author={Lindsay, Alexander and Giudicelli, Guillaume and German, Peter and Peterson, John and Wang, Yaqi and Freile, Ramiro and Andrs, David and Balestra, Paolo and Tano, Mauricio and Hu, Rui and others},
  journal={SoftwareX},
  volume={23},
  pages={101503},
  year={2023},
  publisher={Elsevier}
}

If you use the finite element incompressible portion of the Navier-Stokes module, please considering citing the following paper as well:

@article{peterson2018overview,
    title = {Overview of the incompressible Navier--Stokes simulation capabilities in the MOOSE
             framework},
   author = {John W. Peterson and Alexander D. Lindsay and Fande Kong},
     year = {2018},
  journal = {Advances in Engineering Software},
   volume = {119},
    pages = {68--92},
publisher = {Elsevier}
}

For a more detailed summary of the finite volume incompressible, compressible and weakly compressible implementations in the Navier-Stokes module, please cite:

@techreport{,
      title = {NEAMS-TH-CRAB},
     author = {Guillaume L. Giudicelli, Alexander D. Lindsay, Ramiro Freile, Jieun Lee},
       year = {2021},
     number = {INL/EXT-21-62895},
institution = {Idaho National Laboratory}
}

Solid Mechanics

If you use the multi-surface plasticity capability, ComputeMultiPlasticityStress, of the Solid Mechanics module (feel free to contact Andy Wilkins if unsure) or if you just want to demonstrate MOOSE's advanced plasticity features, please cite:

@article{adhikary2016robust,
  title = {A robust return-map algorithm for general multisurface plasticity},
 author = {Deepak P. Adhikary and  Chandana Jayasundara and Robert K. Podgorney and Andy H. Wilkins},
   year = {2016},
journal = {International Journal for Numerical Methods in Engineering},
  month = {01},
  pages = {218--234},
 volume = {109},
    doi = {10.1002/nme.5284}
}

If you use smoothed multi-surface plasticity, such plasticity models derived from MultiParameterPlasticityStressUpdate (CappedMohrCoulombStressUpdate, TensileStressUpdate, CappedDruckerPragerStressUpdate, CappedWeakPlaneStressUpdate, etc - feel free to contact Andy Wilkins if unsure) of if you just want to demonstrate MOOSE's advanced plasticity features, please cite the following.

@article{wilkins2020method,
  title = {A method for smoothing multiple yield functions},
 author = {Andy Wilkins and Benjamin W. Spencer and Amit Jain and Bora Gencturk},
   year = {2020},
journal = {International Journal for Numerical Methods in Engineering},
 volume = {121},
 number = {3},
  pages = {434--449},
    doi = {10.1002/nme.6215}
}

Thermal Hydraulics

This paper gives an overview of the MOOSE Thermal Hydraulics module (THM):

@article{hansel2024,
  author = {Joshua Hansel and David Andrs and Lise Charlot and Guillaume Giudicelli},
  title = {The {MOOSE} Thermal Hydraulics Module},
  journal = {Journal of Open Source Software},
  publisher = {The Open Journal},
  year = {2024},
  volume = {9},
  number = {94},
  pages = {6146},
  doi = {10.21105/joss.06146},
  url = {https://doi.org/10.21105/joss.06146}
}

Peridynamics

The following papers document the formulations used in the MOOSE Peridynamics module.

The first paper documents the approach used for irregular discretizations and thermo-mechanical coupling:

@article{hu2018thermomechanical,
  title = {Thermomechanical peridynamic analysis with irregular non-uniform domain discretization},
 author = {Hu, Yile and Chen, Hailong and Spencer, Benjamin W. and Madenci, Erdogan},
   year = {2018},
journal = {Engineering Fracture Mechanics},
  month = {June},
  pages = {92--113},
 volume = {197}
}

The following papers document the stabilization method used for non-ordinary state-based peridynamics in MOOSE:

@article{chen2018bond,
  title = {Bond-associated deformation gradients for peridynamic correspondence model},
 author = {Chen, Hailong},
   year = {2018},
journal = {Mechanics Research Communications},
  month = {June},
  pages = {34--41},
 volume = {90}
}

@article{chen2019peridynamic,
  title = {Peridynamic bond-associated correspondence model: {Stability} and convergence properties},
 author = {Chen, Hailong and Spencer, Benjamin W.},
journal = {International Journal for Numerical Methods in Engineering},
   year = {2019},
  month = {February},
 number = {6},
  pages = {713--727},
 volume = {117}
}

Porous Flow

The following papers present the governing equations of the MOOSE Porous Flow module, along with discussions of its capabilities and implementation details:

@article{Wilkins2020,
  doi = {10.21105/joss.02176},
  url = {https://doi.org/10.21105/joss.02176},
  year = {2020},
  publisher = {The Open Journal},
  volume = {5},
  number = {55},
  pages = {2176},
  author = {Andy Wilkins and Christopher P. Green and Jonathan Ennis-King},
  title = {PorousFlow: a multiphysics simulation code for coupled problems in porous media},
  journal = {Journal of Open Source Software}
}

@article{Wilkins2021,
  title = {An open-source multiphysics simulation code for coupled problems in porous media},
  journal = {Computers \& Geosciences},
  volume = {154},
  pages = {104820},
  year = {2021},
  issn = {0098-3004},
  doi = {10.1016/j.cageo.2021.104820},
  author = {Andy Wilkins and Christopher P. Green and Jonathan Ennis-King}
}

Geochemistry Module

The following paper introduces the MOOSE Geochemistry module, along with discussions of its capabilities and implementation details:

@article{Wilkins2021,
  doi = {10.21105/joss.03314},
  url = {https://doi.org/10.21105/joss.03314},
  year = {2021},
  publisher = {The Open Journal},
  volume = {6},
  number = {68},
  pages = {3314},
  author = {Andy Wilkins and Christopher P. Green and Logan Harbour and Robert Podgorney},
  title = {The MOOSE geochemistry module},
  journal = {Journal of Open Source Software}
}

XFEM

The following papers document various aspects of the MOOSE XFEM module.

This paper documents the algorithms used for mesh cutting and partial element integration, and shows applications on several coupled thermal-mechanical problems:

@article{jiang2020ceramic,
  title = {Ceramic nuclear fuel fracture modeling with the extended finite element method},
 author = {Jiang, Wen and Spencer, Benjamin W. and Dolbow, John E.},
journal = {Engineering Fracture Mechanics},
   year = {2020}
  month = {January},
  pages = {106713},
 volume = {223}
}

This paper documents the moment fitting algorithm that can optionally be used for improved accuracy with MOOSE's XFEM implementation:

@article{zhang2018modified,
  title = {A modified moment-fitted integration scheme for {X}-{FEM} applications with
           history-dependent material data},
 author = {Zhang, Ziyu and Jiang, Wen and Dolbow, John E. and Spencer, Benjamin W.},
journal = {Computational Mechanics},
   year = {2018},
  month = {August},
 number = {2},
  pages = {233--252},
 volume = {62}
}

Reactor

The following paper documents functionalities and demonstration of the MOOSE Reactor module.

@article{shemon2023reactor,
 author = {Emily Shemon and Yinbin Miao and Shikhar Kumar and Kun Mo and Yeon Sang Jung and Aaron Oaks and Scott Richards and Guillaume Giudicelli and Logan Harbour and Roy Stogner},
  title = {MOOSE Reactor Module: An Open-Source Capability for Meshing Nuclear Reactor Geometries},
journal = {Nuclear Science and Engineering},
 volume = {0},
 number = {0},
  pages = {1-25},
  year  = {2023},
    doi = {10.1080/00295639.2022.2149231},
    URL = {https://doi.org/10.1080/00295639.2022.2149231},
 eprint = {https://doi.org/10.1080/00295639.2022.2149231}
}

Fluid-structure interaction

This paper documents the development of the acoustic FSI capabilities and its verification and experimental validation.

@article{dhulipala2022acousticfsi,
  title = {Development, verification, and validation of comprehensive acoustic fluid-structure interaction capabilities in an open-source computational platform},
 author = {Dhulipala, Somayajulu L. N. and Bolisetti, Chandrakanth and Munday, Lynn B. and Hoffman, William M. and Yu, Ching-Ching and Mir, Faizan U. H. and Kong, Fande and Lindsay, Alexander D. and Whittaker, Andrew S.},
journal = {Earthquake Engineering and Structural Dynamics},
   year = {2022}
  month = {May},
  pages = {1--33},
 doi    = {10.1002/eqe.3659},
 url    = {https://doi.org/10.1002/eqe.3659}
}

Electromagnetics Module

This paper documents the initial development, function, verification, and validation of the electromagnetics module.

@article{icenhour2024electromagnetics,
  author = {Casey T. Icenhour and Alexander D. Lindsay and Cody J. Permann and Richard C. Martineau and David L. Green and Steven C. Shannon},
  title = {The MOOSE electromagnetics module},
  journal = {SoftwareX},
  publisher = {Elsevier},
  volume = {25},
  pages = {101621},
  year = {2024},
  month = {February},
  issn = {2352-7110},
  doi = {https://doi.org/10.1016/j.softx.2023.101621},
  url = {https://www.sciencedirect.com/science/article/pii/S2352711023003175}
}

Stochastic Tools Module

The following paper documents functionalities and demonstration of the MOOSE stochastic tools module.

@article{slaughter2023moose,
  title={MOOSE Stochastic Tools: A module for performing parallel, memory-efficient in situ stochastic simulations},
  author={Slaughter, Andrew E and Prince, Zachary M and German, Peter and Halvic, Ian and Jiang, Wen and Spencer, Benjamin W and Dhulipala, Somayajulu LN and Gaston, Derek R},
  journal={SoftwareX},
  volume={22},
  pages={101345},
  year={2023},
  publisher={Elsevier}
}

Phase Field Module

@article{schwen2023phasefield,
  author = {D. Schwen and L.K. Aagesen and J.W. Peterson and M.R. Tonks}
  title = {Rapid multiphase-field model development using a modular free energy based approach with automatic differentiation in MOOSE/MARMOT},
  journal = {Computational Materials Science},
  volume = {132},
  pages = {36-45},
  year = {2017},
  doi = {https://doi.org/10.1016/j.commatsci.2017.02.017},
  url = {https://www.sciencedirect.com/science/article/pii/S0927025617300885},
}

Optimization Module

@article{PRINCE2024101754,
author = {Zachary M. Prince and Lynn Munday and Dewen Yushu and Max Nezdyur and Murthy Guddati}
title = {MOOSE Optimization Module: Physics-constrained optimization},
journal = {SoftwareX},
volume = {26},
pages = {101754},
year = {2024},
doi = {https://doi.org/10.1016/j.softx.2024.101754},
url = {https://www.sciencedirect.com/science/article/pii/S2352711024001250},
}