- fileThe filename to read.
C++ Type:MeshFileName
Description:The filename to read.
FileMeshGenerator
Read a mesh from a file.
Supported File Formats
The FileMeshGenerator is the default type for MOOSE and as the name suggests it reads the mesh from an external file. MOOSE supports reading and writing a large number of formats and could be extended to read more.
| Extension | Description |
|---|---|
| .e, .exd | Sandia's ExodusII format |
| .dat | Tecplot ASCII file |
| .fro | ACDL's surface triangulation file |
| .gmv | LANL's GMV (General Mesh Viewer) format |
| .mat | Matlab triangular ASCII file (read only) |
| .msh | GMSH ASCII file |
| .n, .nem | Sandia's Nemesis format |
| .plt | Tecplot binary file (write only) |
| .node, .ele; .poly | TetGen ASCII file (read; write) |
| .inp | Abaqus .inp format (read only) |
| .ucd | AVS's ASCII UCD format |
| .unv | I-deas Universal format |
| .xda, .xdr | libMesh formats |
| .vtk, .pvtu | Visualization Toolkit |
| .cpr | Checkpoint file |
When reading a mesh file in Sandia's ExodusII format, users can use parameter exodus_extra_element_integers to load elemental variables for setting extra element integers of the mesh. The names of the extra element integers will be the same as the names of the element variables in the mesh file. This generator can also be used for restarting variables from the Exodus file format. In order to indicate that the mesh file can be used to restart variables, simply set the parameter use_for_exodus_restart = true. The initial_from_file_var parameter must also be set in the variables sub-block as described in Restart in order to perform variable restart.
Further FileMeshGenerator Documentation
Input Parameters
- exodus_extra_element_integersThe variable names in the mesh file for loading extra element integers
C++ Type:std::vector<std::string>
Options:
Description:The variable names in the mesh file for loading extra element integers
- show_infoFalseWhether or not to show mesh info after generating the mesh (bounding box, element types, sidesets, nodesets, subdomains, etc)
Default:False
C++ Type:bool
Options:
Description:Whether or not to show mesh info after generating the mesh (bounding box, element types, sidesets, nodesets, subdomains, etc)
- use_for_exodus_restartFalseTrue to indicate that the mesh file this generator is reading can be used for restarting variables
Default:False
C++ Type:bool
Options:
Description:True to indicate that the mesh file this generator is reading can be used for restarting variables
Optional Parameters
- control_tagsAdds user-defined labels for accessing object parameters via control logic.
C++ Type:std::vector<std::string>
Options:
Description:Adds user-defined labels for accessing object parameters via control logic.
- enableTrueSet the enabled status of the MooseObject.
Default:True
C++ Type:bool
Options:
Description:Set the enabled status of the MooseObject.
Advanced Parameters
Input Files
- (modules/ray_tracing/test/tests/traceray/nonplanar/nonplanar.i)
- (test/tests/ics/from_exodus_solution/elem_part2.i)
- (test/tests/meshgenerators/sideset_around_subdomain_generator/around_normals_generator.i)
- (modules/contact/test/tests/pdass_problems/frictional_bouncing_block_action.i)
- (modules/contact/examples/2d_indenter/indenter_rz_fine.i)
- (modules/tensor_mechanics/tutorials/basics/part_3_1.i)
- (modules/peridynamics/test/tests/mesh/3D_sidesets_partial_boundary.i)
- (modules/contact/test/tests/normal-nodal-lm-tan-tolerance/normal-nodal-lm-tan-tolerance.i)
- (test/tests/meshgenerators/break_mesh_by_block_generator/break_mesh_2DJunction_splittrue.i)
- (modules/contact/test/tests/bouncing-block-contact/ping-ponging/mortar-no-ping-pong_weighted.i)
- (modules/heat_conduction/test/tests/gap_heat_transfer_htonly/cyl2D_yz.i)
- (modules/contact/test/tests/non-singular-frictional-mortar/frictional-mortar.i)
- (test/tests/mortar/continuity-2d-conforming/conforming_two_var.i)
- (modules/tensor_mechanics/test/tests/CylindricalRankTwoAux/test.i)
- (test/tests/mortar/cant-do-3d/periodic.i)
- (test/tests/meshgenerators/file_mesh_generator/file_mesh_generator.i)
- (modules/contact/test/tests/pdass_problems/ironing.i)
- (test/tests/transfers/multiapp_interpolation_transfer/fromrestrictedsub_sub.i)
- (modules/peridynamics/test/tests/generalized_plane_strain/generalized_plane_strain_squares_OSPD.i)
- (test/tests/mesh_modifiers/transform/rotate_and_scale.i)
- (test/tests/meshgenerators/sideset_around_subdomain_generator/around.i)
- (test/tests/mesh_modifiers/add_extra_nodeset/extra_nodeset_coord_test.i)
- (test/tests/meshgenerators/add_all_side_sets_generators/less_simple.i)
- (modules/porous_flow/examples/restart/gas_injection.i)
- (modules/navier_stokes/test/tests/finite_volume/cns/pressure_outlet/subsonic_nozzle_fixed_inflow_hllc.i)
- (modules/porous_flow/examples/coal_mining/fine_with_fluid.i)
- (test/tests/mortar/displaced-gap-conductance-2d-bnd-coupling/gap-conductance-bnd-aux-kernel.i)
- (test/tests/mortar/mortar-q-points/test.i)
- (modules/peridynamics/test/tests/mesh/Error_wrong_bonding_blockID.i)
- (test/tests/mesh/mesh_only/mesh_only.i)
- (test/tests/mesh_modifiers/break_mesh_by_blocks/3D/TestBreakMesh_3D_3Block_splitTrue_Auto.i)
- (test/tests/meshgenerators/add_all_side_sets_generators/simple.i)
- (modules/peridynamics/test/tests/mesh/2D_single_interface_block.i)
- (modules/porous_flow/examples/multiapp_fracture_flow/3dFracture/fracture_only_aperture_changing.i)
- (test/tests/mesh_modifiers/mesh_extruder/extrude_remap_layer2.i)
- (modules/contact/test/tests/mechanical-small-problem/frictionless-nodal-lm-mortar-disp.i)
- (modules/peridynamics/test/tests/simple_tests/2D_irregularD_variableH_BPD.i)
- (modules/porous_flow/examples/groundwater/ex02_abstraction.i)
- (test/tests/mortar/displaced-gap-conductance-2d-non-conforming/gap-conductance.i)
- (test/tests/mortar/displaced-gap-conductance-2d-bnd-coupling/gap-conductance-bnd-material.i)
- (test/tests/meshgenerators/sidesets_from_points_generator/sidesets_from_points.i)
- (test/tests/meshgenerators/gmsh_bcs/gmsh_bcs.i)
- (modules/peridynamics/test/tests/mesh/2D_convert_one.i)
- (test/tests/meshgenerators/break_mesh_by_block_generator/break_mesh_3D_polycrystal.i)
- (modules/contact/test/tests/mechanical-small-problem/frictionless-nodal-lm-mortar-disp-action.i)
- (test/tests/mortar/continuity-2d-non-conforming/dual-soln-continuity.i)
- (modules/contact/test/tests/sliding_block/in_and_out/frictionless_lm.i)
- (test/tests/meshgenerators/patterned_mesh_generator/patterned_mesh_generator.i)
- (test/tests/meshgenerators/break_mesh_by_block_generator/break_mesh_3D_auto.i)
- (test/tests/mortar/continuity-2d-non-conforming/soln-continuity.i)
- (modules/combined/test/tests/gap_heat_transfer_jac/two_blocks.i)
- (modules/peridynamics/test/tests/auxkernels/boundary_offset_node_area_2D.i)
- (test/tests/mortar/periodic-value/periodic.i)
- (modules/tensor_mechanics/test/tests/cohesive_zone_model/czm_patch_test_base.i)
- (modules/peridynamics/test/tests/mesh/3D_sideset.i)
- (modules/porous_flow/examples/coal_mining/coarse_with_fluid.i)
- (modules/navier_stokes/test/tests/postprocessors/conservation_INSFE.i)
- (test/tests/mesh_modifiers/break_mesh_by_blocks/2D/TestBreakMesh_2DJunction_Auto.i)
- (test/tests/meshgenerators/break_mesh_by_block_generator/break_mesh_3D_splittrue.i)
- (modules/contact/test/tests/pdass_problems/cylinder_friction.i)
- (modules/heat_conduction/test/tests/gap_heat_transfer_htonly/cyl2D_xz.i)
- (modules/contact/test/tests/bouncing-block-contact/ping-ponging/mortar-no-ping-pong.i)
- (test/tests/mesh_modifiers/add_all_side_sets/less_simple.i)
- (modules/heat_conduction/test/tests/gap_heat_transfer_mortar/gap_heat_transfer_mortar.i)
- (modules/porous_flow/examples/groundwater/ex02_steady_state.i)
- (test/tests/mesh/subdomain_partitioner/subdomain_partitioner.i)
- (test/tests/mortar/displaced-gap-conductance-2d-bnd-coupling/gap-conductance.i)
- (test/tests/meshgenerators/tiled_mesh_generator/tiled_mesh_generator.i)
- (test/tests/meshgenerators/sidesets_by_normals_generator/less_simple.i)
- (test/tests/meshgenerators/block_deletion_generator/block_deletion_test11.i)
- (test/tests/meshgenerators/mesh_extruder_generator/extrude_angle.i)
- (test/tests/mesh_modifiers/break_mesh_by_blocks/2D/TestBreakMesh_2DJunction_splitTrue_Auto.i)
- (modules/peridynamics/test/tests/simple_tests/2D_irregularD_variableH_OSPD.i)
- (test/tests/meshgenerators/mesh_extruder_generator/extrude_remap_layer1.i)
- (test/tests/mesh_modifiers/smooth_mesh/mesh_smoother.i)
- (modules/tensor_mechanics/test/tests/shell/static/pinched_cylinder_symm.i)
- (modules/combined/test/tests/exception/ad.i)
- (test/tests/meshgenerators/break_mesh_by_block_generator/break_mesh_2DJunction_auto.i)
- (test/tests/mesh_modifiers/mesh_extruder/extruder_quad.i)
- (test/tests/meshgenerators/stitched_mesh_generator/stitched_mesh_generator2.i)
- (test/tests/mortar/continuity-2d-conforming/conforming.i)
- (test/tests/meshgenerators/file_mesh_generator/exodus_file_mesh_with_id.i)
- (modules/navier_stokes/test/tests/postprocessors/conservation_INSFV.i)
- (modules/heat_conduction/test/tests/meshed_gap_thermal_contact/meshed_annulus_thermal_contact.i)
- (test/tests/mortar/continuity-2d-non-conforming/sequencing-stateful-soln-continuity.i)
- (test/tests/mesh_modifiers/add_all_side_sets/simple.i)
- (test/tests/meshgenerators/sidesets_from_normals_generator/sidesets_cylinder_normals.i)
- (test/tests/mesh_modifiers/add_side_sets/cylinder_normals_fixed.i)
- (modules/heat_conduction/test/tests/gap_heat_transfer_mortar/gap_heat_transfer_mortar_displaced.i)
- (modules/tensor_mechanics/examples/coal_mining/fine.i)
- (test/tests/meshgenerators/transform_generator/rotate_and_scale.i)
- (modules/heat_conduction/test/tests/gap_heat_transfer_htonly/planar_xz.i)
- (test/tests/meshgenerators/mesh_extruder_generator/extrude_remap_layer2.i)
- (test/tests/mesh_modifiers/break_mesh_by_blocks/2D/TestBreakMesh_2D_polycrystal.i)
- (test/tests/mesh_modifiers/sidesets_around_subdomain/around.i)
- (test/tests/mortar/continuity-2d-conforming/conforming-2nd-order.i)
- (modules/navier_stokes/test/tests/ins/jeffery_hamel/wedge_dirichlet.i)
- (test/tests/mesh_modifiers/break_mesh_by_blocks/3D/TestBreakMesh_3D_polycrystal.i)
- (test/tests/mesh_modifiers/mesh_extruder/extruder_tri.i)
- (modules/contact/test/tests/bouncing-block-contact/frictional-nodal-min-normal-lm-mortar-pdass-tangential-lm-mortar-disp.i)
- (test/tests/meshgenerators/sidesets_between_subdomains_generator/between.i)
- (modules/peridynamics/test/tests/mesh/2D_convert_one_retain.i)
- (modules/heat_conduction/test/tests/meshed_gap_thermal_contact/meshed_gap_thermal_contact.i)
- (test/tests/mesh_modifiers/modifier_depend_order/modifier_depend_order.i)
- (test/tests/meshgenerators/smooth_mesh_generator/mesh_smoother_generator.i)
- (modules/ray_tracing/test/tests/raybcs/reflect_ray_bc/reflect_ray_bc_nonplanar.i)
- (test/tests/meshgenerators/gmsh/gmsh_test.i)
- (test/tests/meshgenerators/mesh_extruder_generator/extrude_quad.i)
- (modules/contact/test/tests/bouncing-block-contact/frictional-nodal-min-normal-lm-mortar-fb-tangential-lm-mortar-action.i)
- (modules/tensor_mechanics/test/tests/domain_integral_thermal/interaction_integral_2d_rot.i)
- (test/tests/mesh_modifiers/sidesets_around_subdomain/around_normals.i)
- (modules/heat_conduction/test/tests/gap_heat_transfer_htonly/gap_heat_transfer_htonly_rz_test.i)
- (modules/tensor_mechanics/examples/coal_mining/coarse.i)
- (modules/combined/test/tests/exception/nonad.i)
- (test/tests/mesh_modifiers/add_side_sets/cylinder_normals.i)
- (test/tests/restart/restart_steady_from_transient/steady_from_transient_restart.i)
- (modules/peridynamics/test/tests/mesh/Error_nonexisting_blockID.i)
- (test/tests/mesh_modifiers/mesh_extruder/extrude_remap_layer1.i)
- (modules/contact/test/tests/bouncing-block-contact/frictional-nodal-min-normal-lm-mortar-fb-tangential-lm-mortar-disp.i)
- (modules/contact/test/tests/sliding_block/in_and_out/frictional_lm.i)
- (modules/peridynamics/test/tests/mesh/2D_convert_all_retain.i)
- (test/tests/mesh_modifiers/add_extra_nodeset/extra_nodeset_test.i)
- (test/tests/restart/scalar-var/part2.i)
- (test/tests/mortar/continuity-2d-conforming/equalgradient.i)
- (test/tests/mesh_modifiers/mesh_extruder/extruder_angle.i)
- (modules/peridynamics/test/tests/auxkernels/boundary_offset_node_volume_3D.i)
- (modules/navier_stokes/test/tests/finite_volume/cns/stagnation_inlet/supersonic_nozzle_hllc.i)
- (test/tests/meshgenerators/sidesets_from_normals_generator/sidesets_cylinder_normals_fixed.i)
- (test/tests/mortar/gap-conductance-2d-non-conforming/gap-conductance.i)
- (test/tests/meshgenerators/fancy_extruder_generator/fancy_extruder_with_element_extra_integer_swap.i)
- (test/tests/mesh_modifiers/add_side_sets/cylinder_points.i)
- (test/tests/meshgenerators/sidesets_by_normals_generator/simple.i)
- (modules/peridynamics/test/tests/mesh/2D_sidesets_partial_boundary.i)
- (modules/contact/test/tests/mechanical-small-problem/mortar-mech.i)
- (test/tests/mesh_modifiers/break_mesh_by_blocks/3D/TestBreakMesh_3D_3Block_Auto.i)
- (modules/peridynamics/test/tests/mesh/Error_nonexisting_sideset.i)
- (modules/contact/test/tests/bouncing-block-contact/frictional-nodal-min-normal-lm-mortar-pdass-tangential-lm-mortar-action.i)
- (test/tests/meshgenerators/break_mesh_by_block_generator/break_mesh_2DJunction_polycrystal.i)
- (modules/contact/test/tests/fieldsplit/frictional_mortar_FS.i)
- (modules/heat_conduction/test/tests/meshed_gap_thermal_contact/meshed_gap_thermal_contact_constant_conductance.i)
- (modules/heat_conduction/test/tests/gap_heat_transfer_htonly/planar_yz.i)
- (test/tests/meshgenerators/stitched_mesh_generator/stitched_mesh_generator.i)
- (modules/navier_stokes/test/tests/postprocessors/conservation_PINSFV.i)
- (test/tests/mesh_modifiers/sidesets_between_subdomains/between.i)
(modules/ray_tracing/test/tests/traceray/nonplanar/nonplanar.i)
[Mesh]
[file]
type = FileMeshGenerator
file = nonplanar.e
[]
[]
[RayBCs/kill]
type = KillRayBC
boundary = 'top right bottom left front back'
[]
[RayKernels/null]
type = NullRayKernel
[]
[UserObjects/lots]
type = LotsOfRaysRayStudy
vertex_to_vertex = true
centroid_to_vertex = true
centroid_to_centroid = true
side_aq = true
centroid_aq = true
compute_expected_distance = true
warn_non_planar = false
execute_on = initial
[]
[Postprocessors]
[total_distance]
type = RayTracingStudyResult
study = lots
result = total_distance
[]
[expected_distance]
type = LotsOfRaysExpectedDistance
lots_of_rays_study = lots
[]
[distance_difference]
type = DifferencePostprocessor
value1 = total_distance
value2 = expected_distance
[]
[]
[Executioner]
type = Steady
[]
[Problem]
solve = false
[]
[Outputs]
exodus = false
csv = true
[]
(test/tests/ics/from_exodus_solution/elem_part2.i)
# Use the exodus file for restarting the problem:
# - restart elemental aux variable
[Mesh]
[fmg]
type = FileMeshGenerator
file = elem_part1_out.e
use_for_exodus_restart = true
[]
# This problem uses ExodusII_IO::copy_elemental_solution(), which only
# works with ReplicatedMesh
parallel_type = replicated
[]
[Functions]
[./exact_fn]
type = ParsedFunction
value = ((x*x)+(y*y))
[../]
[./forcing_fn]
type = ParsedFunction
value = -4
[../]
[]
[AuxVariables]
[./e]
order = CONSTANT
family = MONOMIAL
initial_from_file_var = e
initial_from_file_timestep = 6
[../]
[]
[AuxKernels]
[./ak]
type = SelfAux
variable = e
[../]
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[./ffn]
type = BodyForce
variable = u
function = forcing_fn
[../]
[]
[BCs]
[./all]
type = FunctionDirichletBC
variable = u
boundary = '0 1 2 3'
function = exact_fn
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
[]
[Outputs]
exodus = true
[]
(test/tests/meshgenerators/sideset_around_subdomain_generator/around_normals_generator.i)
[Mesh]
[./fmg]
type = FileMeshGenerator
file = twoblocks.e
[]
[./top_block1]
type = SideSetsAroundSubdomainGenerator
input = fmg
block = 'left'
new_boundary = 'top_of_left_block'
normal = '0 0 1'
[]
[./bottom_block2]
type = SideSetsAroundSubdomainGenerator
input = top_block1
block = 'right'
new_boundary = 'bottom_of_right_block'
normal = '0 0 -1'
[]
[./right_block1]
type = SideSetsAroundSubdomainGenerator
input = bottom_block2
block = 'left'
new_boundary = 'right_of_left_block'
normal = '1 0 0'
[]
[./right_block2]
type = SideSetsAroundSubdomainGenerator
input = right_block1
block = 'right'
new_boundary = 'right_of_right_block'
normal = '1 0 0'
[]
[]
[Outputs]
exodus = true
[]
(modules/contact/test/tests/pdass_problems/frictional_bouncing_block_action.i)
starting_point = 2e-1
offset = 1e-2
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Mesh]
[file]
type = FileMeshGenerator
file = long-bottom-block-1elem-blocks.e
[]
uniform_refine = 0 # 1,2
patch_update_strategy = always
[]
[Problem]
kernel_coverage_check = false
material_coverage_check = false
[]
[Variables]
[disp_x]
block = '1 2'
[]
[disp_y]
block = '1 2'
[]
[]
[ICs]
[disp_y]
block = 2
variable = disp_y
value = '${fparse starting_point + offset}'
type = ConstantIC
[]
[]
[Modules/TensorMechanics/Master]
[all]
strain = FINITE
generate_output = 'stress_xx stress_yy'
block = '1 2'
[]
[]
[Materials]
[elasticity_2]
type = ComputeIsotropicElasticityTensor
block = '2'
youngs_modulus = 1e3
poissons_ratio = 0.3
[]
[elasticity_1]
type = ComputeIsotropicElasticityTensor
block = '1'
youngs_modulus = 1e6
poissons_ratio = 0.3
[]
[stress]
type = ComputeFiniteStrainElasticStress
block = '1 2'
[]
[]
[Contact]
[frictional]
mesh = file
primary = 20
secondary = 10
formulation = mortar
model = coulomb
friction_coefficient = 0.4
c_normal = 1.0e3
c_tangential = 5.0e1
[]
[]
[BCs]
[botx]
type = DirichletBC
variable = disp_x
boundary = '40'
value = 0.0
[]
[boty]
type = DirichletBC
variable = disp_y
boundary = '40'
value = 0.0
[]
[topy]
type = ADFunctionDirichletBC
variable = disp_y
boundary = 30
function = '${starting_point} * cos(2 * pi / 20 * t) + ${offset}'
preset = false
[]
[leftx]
type = ADFunctionDirichletBC
variable = disp_x
boundary = 30
function = '2e-2 * t'
# function = '0'
preset = false
[]
[]
[Executioner]
type = Transient
end_time = 7 # 70
dt = 0.25 # 0.1 for finer meshes (uniform_refine)
dtmin = .01
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason -pc_svd_monitor '
'-snes_linesearch_monitor '
petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount -mat_mffd_err'
petsc_options_value = 'lu NONZERO 1e-15 1e-5'
l_max_its = 30
nl_max_its = 40
line_search = 'none'
snesmf_reuse_base = false
nl_abs_tol = 1e-9
nl_rel_tol = 1e-9
l_tol = 1e-07 # Tightening l_tol can help with friction
[]
[Debug]
show_var_residual_norms = true
[]
[VectorPostprocessors]
[cont_press]
type = NodalValueSampler
variable = frictional_normal_lm
boundary = '10'
sort_by = x
execute_on = FINAL
[]
[friction]
type = NodalValueSampler
variable = frictional_tangential_lm
boundary = '10'
sort_by = x
execute_on = FINAL
[]
[]
[Outputs]
exodus = true
[checkfile]
type = CSV
show = 'cont_press friction'
start_time = 0.0
execute_vector_postprocessors_on = FINAL
[]
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
[Postprocessors]
active = 'num_nl cumulative_nli contact cumulative_li num_l'
[num_nl]
type = NumNonlinearIterations
[]
[num_l]
type = NumLinearIterations
[]
[cumulative_nli]
type = CumulativeValuePostprocessor
postprocessor = num_nl
[]
[cumulative_li]
type = CumulativeValuePostprocessor
postprocessor = num_l
[]
[contact]
type = ContactDOFSetSize
variable = frictional_normal_lm
subdomain = 'frictional_secondary_subdomain'
execute_on = 'nonlinear timestep_end'
[]
[]
(modules/contact/examples/2d_indenter/indenter_rz_fine.i)
[GlobalParams]
volumetric_locking_correction = true
displacements = 'disp_x disp_y'
[]
[Problem]
coord_type = RZ
type = ReferenceResidualProblem
reference_vector = 'ref'
extra_tag_vectors = 'ref'
[]
[Mesh]
patch_update_strategy = auto
patch_size = 2
partitioner = centroid
centroid_partitioner_direction = y
[simple_mesh]
type = FileMeshGenerator
file = indenter_rz_fine_bigsideset.e
[]
[secondary]
type = LowerDBlockFromSidesetGenerator
sidesets = '4'
new_block_id = '10001'
new_block_name = 'secondary_lower'
input = simple_mesh
[]
[primary]
type = LowerDBlockFromSidesetGenerator
sidesets = '6'
new_block_id = '10000'
new_block_name = 'primary_lower'
input = secondary
[]
# For NodalVariableValue to work with distributed mesh
allow_renumbering = false
[../]
[Functions]
[disp_y]
type = PiecewiseLinear
x = '0. 1.0 2.0 2.6 3.0'
y = '0. -4.5 -5.7 -5.7 -4.0'
[]
[]
[Variables]
[disp_x]
order = FIRST
family = LAGRANGE
block = '1 2'
[]
[disp_y]
order = FIRST
family = LAGRANGE
block = '1 2'
[]
[frictionless_normal_lm]
block = 'secondary_lower'
[]
[]
[AuxVariables]
[saved_x]
[]
[saved_y]
[]
[]
[Modules/TensorMechanics/Master]
[all]
add_variables = true
strain = FINITE
block = '1 2'
use_automatic_differentiation = false
generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_zz'
save_in = 'saved_x saved_y'
[]
[]
[BCs]
# Symmetries of the Problem
[symm_x_indenter]
type = DirichletBC
variable = disp_x
boundary = 5
value = 0.0
[]
[symm_x_material]
type = DirichletBC
variable = disp_x
boundary = 9
value = 0.0
[]
# Material should not fly away
[material_base_y]
type = DirichletBC
variable = disp_y
boundary = 8
value = 0.0
[]
# Drive indenter motion
[disp_y]
type = FunctionDirichletBC
variable = disp_y
boundary = 1
function = disp_y
[]
[]
[Constraints]
# All constraints below for mechanical contact (Mortar)
[lm]
type = NormalNodalLMMechanicalContact
secondary = '4'
primary = 6
variable = frictionless_normal_lm
primary_variable = disp_x
disp_y = disp_y
use_displaced_mesh = true
tangential_tolerance = 0.01
[]
[x]
type = NormalMortarMechanicalContact
primary_boundary = '6'
secondary_boundary = '4'
primary_subdomain = '10000'
secondary_subdomain = '10001'
variable = frictionless_normal_lm
secondary_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = true
[]
[y]
type = NormalMortarMechanicalContact
primary_boundary = '6'
secondary_boundary = '4'
primary_subdomain = '10000'
secondary_subdomain = '10001'
variable = frictionless_normal_lm
secondary_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = true
[]
[../]
[UserObjects]
[slip_rate_gss]
type = CrystalPlasticitySlipRateGSS
variable_size = 48
slip_sys_file_name = input_slip_sys_bcc48.txt
num_slip_sys_flowrate_props = 2
flowprops = '1 48 0.0001 0.01'
uo_state_var_name = state_var_gss
slip_incr_tol = 10.0
block = 2
[]
[slip_resistance_gss]
type = CrystalPlasticitySlipResistanceGSS
variable_size = 48
uo_state_var_name = state_var_gss
block = 2
[]
[state_var_gss]
type = CrystalPlasticityStateVariable
variable_size = 48
groups = '0 24 48'
group_values = '900 1000' #120
uo_state_var_evol_rate_comp_name = state_var_evol_rate_comp_gss
scale_factor = 1.0
block = 2
[]
[state_var_evol_rate_comp_gss]
type = CrystalPlasticityStateVarRateComponentGSS
variable_size = 48
hprops = '1.4 1000 1200 2.5'
uo_slip_rate_name = slip_rate_gss
uo_state_var_name = state_var_gss
block = 2
[]
[]
[Materials]
[tensor]
type = ComputeIsotropicElasticityTensor
block = '1'
youngs_modulus = 1.0e7
poissons_ratio = 0.25
[]
[stress]
type = ComputeFiniteStrainElasticStress
block = '1'
[]
[crysp]
type = FiniteStrainUObasedCP
block = 2
stol = 1e-2
tan_mod_type = exact
uo_slip_rates = 'slip_rate_gss'
uo_slip_resistances = 'slip_resistance_gss'
uo_state_vars = 'state_var_gss'
uo_state_var_evol_rate_comps = 'state_var_evol_rate_comp_gss'
maximum_substep_iteration = 20
[]
[elasticity_tensor]
type = ComputeElasticityTensorCP
block = 2
C_ijkl = '265190 113650 113650 265190 113650 265190 75769 75769 75760'
fill_method = symmetric9
[]
[]
[Preconditioning]
[SMP]
type = SMP
full = true
[]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options = '-snes_ksp_ew'
petsc_options_iname = '-pc_type -snes_linesearch_type -pc_factor_shift_type '
'-pc_factor_shift_amount'
petsc_options_value = 'lu basic NONZERO 1e-15'
line_search = 'none'
automatic_scaling = true
nl_abs_tol = 1.5e-07
nl_rel_tol = 1.5e-07
l_max_its = 40
l_abs_tol = 1e-08
l_tol = 1e-08
start_time = 0.0
dt = 0.01
end_time = 3.0 # Executioner
[]
[Postprocessors]
[maxdisp]
type = NodalVariableValue
nodeid = 39
variable = disp_y
[]
[resid_y]
type = NodalSum
variable = saved_y
boundary = 1
[]
[]
[Outputs]
[out]
type = Exodus
elemental_as_nodal = true
[]
perf_graph = true
csv = true
[]
(modules/tensor_mechanics/tutorials/basics/part_3_1.i)
#Tensor Mechanics tutorial: the basics
#Step 3, part 1
#3D simulation of uniaxial tension with J2 plasticity
[GlobalParams]
displacements = 'disp_x disp_y disp_z'
[]
[Mesh]
[file_mesh]
type = FileMeshGenerator
file = necking_quad4.e
[]
[extrude]
type = MeshExtruderGenerator
extrusion_vector = '0 0 0.5'
num_layers = 2
bottom_sideset = 'back'
top_sideset = 'front'
input = file_mesh
[]
uniform_refine = 0
second_order = true
[]
[Modules/TensorMechanics/Master]
[./block1]
strain = FINITE
add_variables = true
generate_output = 'stress_yy strain_yy'
[../]
[]
[Materials]
[./elasticity_tensor]
type = ComputeIsotropicElasticityTensor
youngs_modulus = 2.1e5
poissons_ratio = 0.3
[../]
[./stress]
type = ComputeMultiPlasticityStress
ep_plastic_tolerance = 1e-9
plastic_models = J2
[../]
[]
[UserObjects]
[./hardening]
type = TensorMechanicsHardeningCubic
value_0 = 2.4e2
value_residual = 3.0e2
internal_0 = 0
internal_limit = 0.005
[../]
[./J2]
type = TensorMechanicsPlasticJ2
yield_strength = hardening
yield_function_tolerance = 1E-3
internal_constraint_tolerance = 1E-9
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = disp_x #change the variable to reflect the new displacement names
boundary = 1
value = 0.0
[../]
[./back]
type = DirichletBC
variable = disp_z #change the variable to reflect the new displacement names
boundary = back
value = 0.0
[../]
[./bottom]
type = DirichletBC
variable = disp_y #change the variable to reflect the new displacement names
boundary = 3
value = 0.0
[../]
[./top]
type = FunctionDirichletBC
variable = disp_y #change the variable to reflect the new displacement names
boundary = 4
function = '0.0007*t'
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
dt = 0.25
end_time = 16
solve_type = 'PJFNK'
petsc_options = '-snes_ksp_ew'
petsc_options_iname = '-pc_type -sub_pc_type -pc_asm_overlap -ksp_gmres_restart'
petsc_options_value = 'asm lu 1 101'
[]
[Postprocessors]
[./ave_stress_bottom]
type = SideAverageValue
variable = stress_yy
boundary = 3
[../]
[./ave_strain_bottom]
type = SideAverageValue
variable = strain_yy
boundary = 3
[../]
[]
[Outputs]
exodus = true
perf_graph = true
csv = true
print_linear_residuals = false
[]
(modules/peridynamics/test/tests/mesh/3D_sidesets_partial_boundary.i)
[Mesh]
type = PeridynamicsMesh
horizon_number = 3
[./fmg]
type = FileMeshGenerator
file = cylinder.e
[../]
[./mgpd]
type = MeshGeneratorPD
input = fmg
retain_fe_mesh = false
construct_pd_sidesets = true
[../]
[]
(modules/contact/test/tests/normal-nodal-lm-tan-tolerance/normal-nodal-lm-tan-tolerance.i)
[GlobalParams]
displacements = 'disp_x disp_y'
preset = false
[]
[Mesh]
[file]
type = FileMeshGenerator
file = 2blk-gap_no1000.e
[]
[primary]
type = LowerDBlockFromSidesetGenerator
input = file
sidesets = '100'
new_block_id = '3'
[]
[secondary]
type = LowerDBlockFromSidesetGenerator
input = primary
sidesets = '101'
new_block_id = '4'
[]
[]
[Modules/TensorMechanics/Master]
[all]
displacements = 'disp_x disp_y'
strain = FINITE
add_variables = true
block = '1 2'
use_automatic_differentiation = true
scaling = 1e-4
[]
[]
[Materials]
[elasticity_tensor]
type = ADComputeIsotropicElasticityTensor
youngs_modulus = 1e5
poissons_ratio = 0.345
block = '1 2'
[]
[_elastic_strain]
type = ADComputeFiniteStrainElasticStress
block = '1 2'
[]
[]
[Variables]
[mortar_normal_lm]
scaling = 1.0e-3
block = '4'
[]
[]
[Constraints]
[frictional_normal_lm]
type = NormalNodalLMMechanicalContact
secondary = 101
primary = 100
variable = mortar_normal_lm
primary_variable = disp_x
disp_y = disp_y
ncp_function_type = min
c = 1.0e4
tangential_tolerance = .05
[]
[normal_x]
type = NormalMortarMechanicalContact
primary_boundary = 100
secondary_boundary = 101
primary_subdomain = 3
secondary_subdomain = 4
variable = mortar_normal_lm
secondary_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = false
[]
[normal_y]
type = NormalMortarMechanicalContact
primary_boundary = 100
secondary_boundary = 101
primary_subdomain = 3
secondary_subdomain = 4
variable = mortar_normal_lm
secondary_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = false
[]
[]
[Functions]
[disp_bc]
type = PiecewiseLinear
x = '0 10.0'
y = '0 -0.30'
[]
[]
[BCs]
[left_x]
type = DirichletBC
variable = disp_x
boundary = 'left'
value = 0.0
[]
[left_y]
type = DirichletBC
variable = disp_y
boundary = 'left'
value = 0.0
[]
[right_x]
type = FunctionDirichletBC
variable = disp_x
boundary = 'right'
function = disp_bc # '-30e-3 * t'
[]
[right_y]
type = FunctionDirichletBC
variable = disp_y
boundary = 'right'
function = 0
[]
[]
[Preconditioning]
[fmp]
type = FDP
full = true
finite_difference_type = standard
[]
[]
[Executioner]
solve_type = NEWTON
type = Transient
num_steps = 10
dt = 1
dtmin = 1
nl_rel_tol = 1e-12
nl_abs_tol = 1e-13
petsc_options = '-ksp_monitor_true_residual -snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -snes_linesearch_type -pc_factor_shift_type -snes_max_it '
'-ksp_max_it'
petsc_options_value = 'lu basic NONZERO 20 30'
[Predictor]
type = SimplePredictor
scale = 1
[]
[]
[Outputs]
checkpoint = true
exodus = true
print_linear_residuals = false
[dof]
type = DOFMap
execute_on = 'initial'
[]
[]
[Debug]
show_var_residual_norms = true
[]
(test/tests/meshgenerators/break_mesh_by_block_generator/break_mesh_2DJunction_splittrue.i)
[Mesh]
[./fmg]
type = FileMeshGenerator
file = 4ElementJunction.e
[]
[./breakmesh]
type = BreakMeshByBlockGenerator
input = fmg
split_interface = true
[]
[]
[Outputs]
exodus = true
[]
(modules/contact/test/tests/bouncing-block-contact/ping-ponging/mortar-no-ping-pong_weighted.i)
starting_point = 2e-1
offset = 1e-2
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Mesh]
[file]
type = FileMeshGenerator
file = long-bottom-block-no-lower-d.e
[]
[]
[Variables]
[disp_x]
[]
[disp_y]
[]
[]
[ICs]
[disp_y]
block = 2
variable = disp_y
value = '${fparse starting_point + offset}'
type = ConstantIC
[]
[]
[Modules/TensorMechanics/Master]
[all]
add_variables = false
use_automatic_differentiation = true
strain = SMALL
[]
[]
[Materials]
[elasticity]
type = ADComputeIsotropicElasticityTensor
youngs_modulus = 1e0
poissons_ratio = 0.3
[]
[stress]
type = ADComputeLinearElasticStress
[]
[]
[Contact]
[leftright]
mesh = file
secondary = 10
primary = 20
model = frictionless
formulation = mortar
c_normal = 1e-1
mortar_approach = weighted
[]
[]
[BCs]
[botx]
type = DirichletBC
variable = disp_x
boundary = 40
value = 0.0
[]
[boty]
type = DirichletBC
variable = disp_y
boundary = 40
value = 0.0
[]
[topy]
type = FunctionDirichletBC
variable = disp_y
boundary = 30
function = '${starting_point} * cos(2 * pi / 40 * t) + ${offset}'
[]
[leftx]
type = FunctionDirichletBC
variable = disp_x
boundary = 50
function = '1e-2 * t'
[]
[]
[Executioner]
type = Transient
num_steps = 40
end_time = 200
dt = 5
dtmin = 5
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type'
petsc_options_value = 'lu 1e-5 NONZERO'
l_max_its = 30
nl_max_its = 20
nl_abs_tol = 1e-10
nl_rel_tol = 1e-10
line_search = 'none'
[]
[Debug]
show_var_residual_norms = true
[]
[Outputs]
[exo]
type = Exodus
[]
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
(modules/heat_conduction/test/tests/gap_heat_transfer_htonly/cyl2D_yz.i)
#
# 2D Cylindrical Gap Heat Transfer Test.
#
# This test exercises 2D gap heat transfer for a constant conductivity gap.
#
# The mesh consists of an inner solid cylinder of radius = 1 unit, and outer
# hollow cylinder with an inner radius of 2 in the y-z plane. In other words,
# the gap between them is 1 radial unit in length.
#
# The calculated results are the same as for the cyl2D.i case in the x-y plane.
[GlobalParams]
order = SECOND
family = LAGRANGE
[]
[Mesh]
[file]
type = FileMeshGenerator
file = cyl2D.e
[]
[./rotate]
type = TransformGenerator
transform = ROTATE
vector_value = '0 90 90'
input = file
[../]
[]
[Functions]
[./temp]
type = PiecewiseLinear
x = '0 1'
y = '100 200'
[../]
[]
[Variables]
[./temp]
initial_condition = 100
[../]
[]
[AuxVariables]
[./gap_conductance]
order = CONSTANT
family = MONOMIAL
[../]
[]
[Kernels]
[./heat_conduction]
type = HeatConduction
variable = temp
[../]
[]
[AuxKernels]
[./gap_cond]
type = MaterialRealAux
property = gap_conductance
variable = gap_conductance
boundary = 2
[../]
[]
[Materials]
[./heat1]
type = HeatConductionMaterial
block = '1 2'
specific_heat = 1.0
thermal_conductivity = 1000000.0
[../]
[]
[ThermalContact]
[./thermal_contact]
type = GapHeatTransfer
variable = temp
primary = 3
secondary = 2
emissivity_primary = 0
emissivity_secondary = 0
gap_conductivity = 1
quadrature = true
gap_geometry_type = CYLINDER
cylinder_axis_point_1 = '0 0 0'
cylinder_axis_point_2 = '1 0 0'
[../]
[]
[BCs]
[./mid]
type = FunctionDirichletBC
boundary = 1
variable = temp
function = temp
[../]
[./temp_far_right]
type = DirichletBC
boundary = 4
variable = temp
value = 100
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = 'lu superlu_dist'
dt = 1
dtmin = 0.01
end_time = 1
nl_rel_tol = 1e-12
nl_abs_tol = 1e-7
[./Quadrature]
order = fifth
side_order = seventh
[../]
[]
[Outputs]
exodus = true
[]
[Postprocessors]
[./temp_left]
type = SideAverageValue
boundary = 2
variable = temp
[../]
[./temp_right]
type = SideAverageValue
boundary = 3
variable = temp
[../]
[./flux_left]
type = SideDiffusiveFluxIntegral
variable = temp
boundary = 2
diffusivity = thermal_conductivity
[../]
[./flux_right]
type = SideDiffusiveFluxIntegral
variable = temp
boundary = 3
diffusivity = thermal_conductivity
[../]
[]
(modules/contact/test/tests/non-singular-frictional-mortar/frictional-mortar.i)
offset = 0.0202
vy = 0.15
vx = 0.040
refine = 1
[GlobalParams]
displacements = 'disp_x disp_y'
volumetric_locking_correction = true
[]
[Mesh]
[./original_file_mesh]
type = FileMeshGenerator
file = long_short_blocks.e
[../]
uniform_refine = ${refine}
[]
[Modules/TensorMechanics/Master]
[./all]
strain = FINITE
incremental = true
add_variables = true
block = '1 2'
scaling = 1e-6
[../]
[]
[Functions]
[./horizontal_movement]
type = ParsedFunction
value = 'if(t<1.0,${vx}*t-${offset},${vx}-${offset})'
[../]
[./vertical_movement]
type = ParsedFunction
value = 'if(t<1.0,${offset},${vy}*(t-1.0)+${offset})'
[../]
[]
[BCs]
[./push_left_x]
type = FunctionDirichletBC
variable = disp_x
boundary = 30
function = horizontal_movement
[../]
[./fix_right_x]
type = DirichletBC
variable = disp_x
boundary = 40
value = 0.0
[../]
[./fix_right_y]
type = DirichletBC
variable = disp_y
boundary = '40'
value = 0.0
[../]
[./push_left_y]
type = FunctionDirichletBC
variable = disp_y
boundary = '30'
function = vertical_movement
[../]
[]
[Materials]
[./elasticity_tensor_left]
type = ComputeIsotropicElasticityTensor
block = 1
youngs_modulus = 1.0e6
poissons_ratio = 0.3
[../]
[./stress_left]
type = ComputeFiniteStrainElasticStress
block = 1
[../]
[./elasticity_tensor_right]
type = ComputeIsotropicElasticityTensor
block = 2
youngs_modulus = 1.0e6
poissons_ratio = 0.3
[../]
[./stress_right]
type = ComputeFiniteStrainElasticStress
block = 2
[../]
[]
[Contact]
[leftright]
mesh = original_file_mesh
secondary = 10
primary = 20
model = coulomb
formulation = mortar
friction_coefficient = 0.2
c_tangential = 1e3
normal_lm_scaling = 1e-3
tangential_lm_scaling = 1e-3
[../]
[]
[ICs]
[./disp_y]
block = 1
variable = disp_y
value = ${offset}
type = ConstantIC
[../]
[./disp_x]
block = 1
variable = disp_x
value = -${offset}
type = ConstantIC
[../]
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
petsc_options = '-snes_converged_reason -ksp_converged_reason -pc_svd_monitor -snes_ksp_ew -pc_svd_monitor'
petsc_options_iname = '-pc_type -mat_mffd_err'
petsc_options_value = 'svd 1e-5'
dt = 0.1
dtmin = 0.1
num_steps = 7
end_time = 4
line_search = none
snesmf_reuse_base = false
[]
[Debug]
show_var_residual_norms = true
[]
[Outputs]
[./exodus]
type = Exodus
[../]
[]
(test/tests/mortar/continuity-2d-conforming/conforming_two_var.i)
[Mesh]
[file]
type = FileMeshGenerator
file = 2blk-conf.e
[]
[secondary]
input = file
type = LowerDBlockFromSidesetGenerator
sidesets = '101'
new_block_id = '10001'
new_block_name = 'secondary_lower'
[]
[primary]
input = secondary
type = LowerDBlockFromSidesetGenerator
sidesets = '100'
new_block_id = '10000'
new_block_name = 'primary_lower'
[]
[]
[Functions]
[./exact_sln]
type = ParsedFunction
value = y
[../]
[./ffn]
type = ParsedFunction
value = 0
[../]
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
block = '1 2'
[../]
[./lm_u]
order = FIRST
family = LAGRANGE
block = 'secondary_lower'
[../]
[./v]
order = FIRST
family = LAGRANGE
block = '1 2'
[../]
[./lm_v]
order = FIRST
family = LAGRANGE
block = 'secondary_lower'
[../]
[]
[Kernels]
[./diff_u]
type = Diffusion
variable = u
[../]
[./ffn]
type = BodyForce
variable = u
function = ffn
[../]
[./diff_v]
type = Diffusion
variable = v
[../]
[./coupled_u]
type = CoupledForce
variable = v
v = u
[../]
[]
[Constraints]
[./ced_u]
type = EqualValueConstraint
variable = lm_u
secondary_variable = u
primary_boundary = 100
primary_subdomain = 10000
secondary_boundary = 101
secondary_subdomain = 10001
[../]
[./ced_v]
type = EqualValueConstraint
variable = lm_v
secondary_variable = v
primary_boundary = 100
primary_subdomain = 10000
secondary_boundary = 101
secondary_subdomain = 10001
[../]
[]
[BCs]
[./all]
type = FunctionDirichletBC
variable = u
boundary = '1 2 3 4'
function = exact_sln
[../]
[./allv]
type = DirichletBC
variable = v
boundary = '1 2 3 4'
value = 0
[../]
[]
[Postprocessors]
[./l2_error]
type = ElementL2Error
variable = u
function = exact_sln
block = '1 2'
execute_on = 'initial timestep_end'
[../]
[./l2_v]
type = ElementL2Norm
variable = v
block = '1 2'
execute_on = 'initial timestep_end'
[../]
[]
[Preconditioning]
[./fmp]
type = SMP
full = true
solve_type = 'NEWTON'
[../]
[]
[Executioner]
type = Steady
nl_rel_tol = 1e-12
l_tol = 1e-12
[]
[Outputs]
exodus = true
[]
(modules/tensor_mechanics/test/tests/CylindricalRankTwoAux/test.i)
[Mesh]
[file_mesh]
type = FileMeshGenerator
file = circle.e
[]
[cnode]
type = ExtraNodesetGenerator
coord = '1000.0 0.0'
new_boundary = 10
input = file_mesh
[]
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[]
[AuxVariables]
[./T]
[../]
[./stress_rr]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_tt]
order = CONSTANT
family = MONOMIAL
[../]
[]
[ICs]
[./T_IC]
type = FunctionIC
variable = T
function = '1000-0.7*sqrt(x^2+y^2)'
[../]
[]
[Kernels]
[./TensorMechanics]
displacements = 'disp_x disp_y'
[../]
[]
[AuxKernels]
[./stress_rr]
type = CylindricalRankTwoAux
variable = stress_rr
rank_two_tensor = stress
index_j = 0
index_i = 0
center_point = '0 0 0'
[../]
[./stress_tt]
type = CylindricalRankTwoAux
variable = stress_tt
rank_two_tensor = stress
index_j = 1
index_i = 1
center_point = '0 0 0'
[../]
[]
[BCs]
[./outer_x]
type = DirichletBC
variable = disp_x
boundary = 2
value = 0
[../]
[./outer_y]
type = DirichletBC
variable = disp_y
boundary = '2 10'
value = 0
[../]
[]
[Materials]
[./iso_C]
type = ComputeElasticityTensor
fill_method = symmetric_isotropic
C_ijkl = '2.15e5 0.74e5'
block = 1
[../]
[./strain]
type = ComputeSmallStrain
displacements = 'disp_x disp_y'
block = 1
eigenstrain_names = eigenstrain
[../]
[./stress]
type = ComputeLinearElasticStress
block = 1
[../]
[./thermal_strain]
type= ComputeThermalExpansionEigenstrain
thermal_expansion_coeff = 1e-6
temperature = T
stress_free_temperature = 273
block = 1
eigenstrain_name = eigenstrain
[../]
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
petsc_options_value = 'hypre boomeramg 101'
l_max_its = 30
nl_max_its = 10
nl_abs_tol = 1e-9
nl_rel_tol = 1e-14
l_tol = 1e-4
[]
[Outputs]
exodus = true
perf_graph = true
[]
(test/tests/mortar/cant-do-3d/periodic.i)
[Mesh]
[file]
type = FileMeshGenerator
file = flow_test.e
[]
[secondary]
input = file
type = LowerDBlockFromSidesetGenerator
new_block_id = 11
new_block_name = "secondary"
sidesets = '1'
[]
[primary]
input = secondary
type = LowerDBlockFromSidesetGenerator
new_block_id = 12
new_block_name = "primary"
sidesets = '2'
[]
[]
[Variables]
[u]
block = 'bottom middle top'
[]
[lm]
block = 'secondary'
[]
[]
[Kernels]
[diffusion]
type = Diffusion
variable = u
block = 'bottom middle top'
[]
[force]
type = BodyForce
variable = u
block = 'bottom middle top'
[]
[]
[BCs]
[left]
type = DirichletBC
variable = u
value = 1
boundary = 'around'
[]
[]
[Constraints]
[ev]
type = EqualValueConstraint
variable = lm
secondary_variable = u
primary_boundary = top
secondary_boundary = bottom
primary_subdomain = 12
secondary_subdomain = 11
periodic = true
[]
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
[Executioner]
type = Steady
solve_type = NEWTON
[]
[Outputs]
exodus = true
[]
(test/tests/meshgenerators/file_mesh_generator/file_mesh_generator.i)
[Mesh]
[fmg]
type = FileMeshGenerator
file = square.e
[]
[]
[Outputs]
exodus = true
[]
(modules/contact/test/tests/pdass_problems/ironing.i)
[GlobalParams]
volumetric_locking_correction = true
displacements = 'disp_x disp_y'
[]
[Mesh]
[input_file]
type = FileMeshGenerator
file = iron.e
[]
[secondary]
type = LowerDBlockFromSidesetGenerator
new_block_id = 10001
new_block_name = 'secondary_lower'
sidesets = '10'
input = input_file
[]
[primary]
type = LowerDBlockFromSidesetGenerator
new_block_id = 10000
sidesets = '20'
new_block_name = 'primary_lower'
input = secondary
[]
patch_update_strategy = auto
patch_size = 20
[]
[Variables]
[disp_x]
[]
[disp_y]
[]
[frictionless_normal_lm]
order = FIRST
family = LAGRANGE
block = 'secondary_lower'
use_dual = true
[]
[tangential_lm]
order = FIRST
family = LAGRANGE
block = 'secondary_lower'
use_dual = true
[]
[]
[AuxVariables]
[stress_xx]
order = CONSTANT
family = MONOMIAL
[]
[stress_yy]
order = CONSTANT
family = MONOMIAL
[]
[stress_xy]
order = CONSTANT
family = MONOMIAL
[]
[saved_x]
[]
[saved_y]
[]
[diag_saved_x]
[]
[diag_saved_y]
[]
[von_mises]
order = CONSTANT
family = MONOMIAL
[]
[]
[Functions]
[disp_ramp_vert]
type = PiecewiseLinear
x = '0. 2. 8.'
y = '0. -1.0 -1.0'
[]
[disp_ramp_horz]
type = PiecewiseLinear
x = '0. 8.' # x = '0. 2. 8.'
y = '0. 8.' # y = '0. 0. 8'
[]
[]
[Kernels]
[TensorMechanics]
use_displaced_mesh = true
save_in = 'saved_x saved_y'
block = '1 2'
strain = FINITE
[]
[]
[AuxKernels]
[stress_xx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xx
index_i = 0
index_j = 0
execute_on = timestep_end
block = '1 2'
[]
[stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
execute_on = timestep_end
block = '1 2'
[]
[stress_xy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xy
index_i = 0
index_j = 1
execute_on = timestep_end
block = '1 2'
[]
[von_mises_kernel]
#Calculates the von mises stress and assigns it to von_mises
type = RankTwoScalarAux
variable = von_mises
rank_two_tensor = stress
execute_on = timestep_end
scalar_type = VonMisesStress
block = '1 2'
[]
[]
[Postprocessors]
[bot_react_x]
type = NodalSum
variable = saved_x
boundary = 20
[]
[bot_react_y]
type = NodalSum
variable = saved_y
boundary = 20
[]
[top_react_x]
type = NodalSum
variable = saved_x
boundary = 10
[]
[top_react_y]
type = NodalSum
variable = saved_y
boundary = 10
[]
[_dt]
type = TimestepSize
[]
[contact_pressure]
type = NodalVariableValue
variable = frictionless_normal_lm
nodeid = 805
[]
[]
[BCs]
[bot_x_disp]
type = DirichletBC
variable = disp_x
boundary = '40'
value = 0.0
preset = false
[]
[bot_y_disp]
type = DirichletBC
variable = disp_y
boundary = '40'
value = 0.0
preset = false
[]
[top_y_disp]
type = FunctionDirichletBC
variable = disp_y
boundary = '30'
function = disp_ramp_vert
preset = false
[]
[top_x_disp]
type = FunctionDirichletBC
variable = disp_x
boundary = '30'
function = disp_ramp_horz
preset = false
[]
[]
[Materials]
[stuff1_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '2'
youngs_modulus = 6896
poissons_ratio = 0.32
[]
[stuff1_strain]
type = ComputeFiniteStrain
block = '2'
[]
[stuff1_stress]
type = ComputeFiniteStrainElasticStress
block = '2'
[]
[stuff2_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '1'
youngs_modulus = 689.6
poissons_ratio = 0.32
[]
[stuff2_strain]
type = ComputeFiniteStrain
block = '1'
[]
[stuff2_stress]
type = ComputeFiniteStrainElasticStress
block = '1'
[]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = 'lu superlu_dist'
line_search = 'none'
nl_abs_tol = 1e-7
nl_rel_tol = 1e-7
l_tol = 1e-6
l_max_its = 50
nl_max_its = 30
start_time = 0.0
end_time = 0.1 # 6.5
dt = 0.0125
dtmin = 1e-5
[]
[Preconditioning]
[SMP]
type = SMP
full = true
[]
[]
[VectorPostprocessors]
[cont_press]
type = NodalValueSampler
variable = frictionless_normal_lm
boundary = '10'
sort_by = id
execute_on = FINAL
[]
[friction]
type = NodalValueSampler
variable = tangential_lm
boundary = '10'
sort_by = id
execute_on = FINAL
[]
[]
[Outputs]
print_linear_residuals = true
perf_graph = true
exodus = false
csv = true
[chkfile]
type = CSV
show = 'cont_press friction'
start_time = 0.0
execute_vector_postprocessors_on = FINAL
[]
[console]
type = Console
max_rows = 5
[]
[]
[Debug]
show_var_residual_norms = true
[]
[Constraints]
# All constraints below for mechanical contact (Mortar)
[weighted_gap_lm]
type = ComputeFrictionalForceLMMechanicalContact
primary_boundary = 20
secondary_boundary = 10
primary_subdomain = 10000
secondary_subdomain = 10001
variable = frictionless_normal_lm
disp_x = disp_x
disp_y = disp_y
use_displaced_mesh = true
friction_lm = tangential_lm
mu = 0.5
c_t = 1.0e1
c = 1.0e3
[]
[x]
type = NormalMortarMechanicalContact
primary_boundary = 20
secondary_boundary = 10
primary_subdomain = '10000'
secondary_subdomain = '10001'
variable = frictionless_normal_lm
secondary_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = false
[]
[y]
type = NormalMortarMechanicalContact
primary_boundary = 20
secondary_boundary = 10
primary_subdomain = '10000'
secondary_subdomain = '10001'
variable = frictionless_normal_lm
secondary_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = false
[]
[tangential_x]
type = TangentialMortarMechanicalContact
primary_boundary = 20
secondary_boundary = 10
primary_subdomain = '10000'
secondary_subdomain = '10001'
variable = tangential_lm
secondary_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = false
[]
[tangential_y]
type = TangentialMortarMechanicalContact
primary_boundary = 20
secondary_boundary = 10
primary_subdomain = '10000'
secondary_subdomain = '10001'
variable = tangential_lm
secondary_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = false
[]
[]
(test/tests/transfers/multiapp_interpolation_transfer/fromrestrictedsub_sub.i)
[Mesh]
[file]
type = FileMeshGenerator
file = 2subdomains.e
[]
[boundary_fuel_side]
input = file
type = SubdomainBoundingBoxGenerator
block_id = 2
bottom_left = '0.2 0 0'
top_right = '0.3 1 0'
[]
[]
[Variables]
[u]
[]
[]
[AuxVariables]
[elemental]
block = '2'
order = CONSTANT
family = MONOMIAL
[]
[nodal]
block = '2'
[]
[]
[Kernels]
[diff]
type = Diffusion
variable = u
[]
[]
[AuxKernels]
[elemaux]
type = CoupledAux
variable = elemental
coupled = u
block = '2'
[]
[nodaux]
type = CoupledAux
variable = nodal
coupled = u
block = '2'
[]
[]
[BCs]
[left]
type = DirichletBC
variable = u
boundary = left
value = 0
[]
[./right]
type = DirichletBC
variable = u
boundary = right
value = 1
[]
[]
[Executioner]
type = Transient
num_steps = 1
dt = 1
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(modules/peridynamics/test/tests/generalized_plane_strain/generalized_plane_strain_squares_OSPD.i)
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Mesh]
type = PeridynamicsMesh
horizon_number = 3
[./fmg]
type = FileMeshGenerator
file = squares.e
[../]
[./gpd]
type = MeshGeneratorPD
input = fmg
retain_fe_mesh = false
[../]
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[./scalar_strain_zz1]
order = FIRST
family = SCALAR
[../]
[./scalar_strain_zz2]
order = FIRST
family = SCALAR
[../]
[]
[AuxVariables]
[./temp]
order = FIRST
family = LAGRANGE
[../]
[./stress_zz1]
order = FIRST
family = LAGRANGE
[../]
[./stress_zz2]
order = FIRST
family = LAGRANGE
[../]
[]
[Modules/Peridynamics/Mechanics]
[./Master]
[./block1]
formulation = ORDINARY_STATE
block = 1001
[../]
[./block2]
formulation = ORDINARY_STATE
block = 1002
[../]
[../]
[./GeneralizedPlaneStrain]
[./block1]
formulation = ORDINARY_STATE
scalar_out_of_plane_strain = scalar_strain_zz1
out_of_plane_stress_variable = stress_zz1
block = 1001
[../]
[./block2]
formulation = ORDINARY_STATE
scalar_out_of_plane_strain = scalar_strain_zz2
out_of_plane_stress_variable = stress_zz2
block = 1002
[../]
[../]
[]
[AuxKernels]
[./tempfuncaux]
type = FunctionAux
variable = temp
function = tempfunc
use_displaced_mesh = false
[../]
[./stress_zz1]
type = NodalRankTwoPD
variable = stress_zz1
rank_two_tensor = stress
scalar_out_of_plane_strain = scalar_strain_zz1
poissons_ratio = 0.3
youngs_modulus = 1e6
temperature = temp
thermal_expansion_coeff = 0.02
stress_free_temperature = 0.5
output_type = component
index_i = 2
index_j = 2
block = 1001
[../]
[./stress_zz2]
type = NodalRankTwoPD
variable = stress_zz2
scalar_out_of_plane_strain = scalar_strain_zz2
poissons_ratio = 0.3
youngs_modulus = 1e6
temperature = temp
thermal_expansion_coeff = 0.02
stress_free_temperature = 0.5
rank_two_tensor = stress
output_type = component
index_i = 2
index_j = 2
block = 1002
[../]
[]
[Postprocessors]
[./react_z1]
type = NodalVariableIntegralPD
variable = stress_zz1
block = 1001
[../]
[./react_z2]
type = NodalVariableIntegralPD
variable = stress_zz2
block = 1002
[../]
[]
[Functions]
[./tempfunc]
type = ParsedFunction
value = '(1-x)*t'
[../]
[]
[BCs]
[./bottom1_x]
type = DirichletBC
boundary = 1001
variable = disp_x
value = 0.0
[../]
[./bottom1_y]
type = DirichletBC
boundary = 1001
variable = disp_y
value = 0.0
[../]
[./bottom2_x]
type = DirichletBC
boundary = 1002
variable = disp_x
value = 0.0
[../]
[./bottom2_y]
type = DirichletBC
boundary = 1002
variable = disp_y
value = 0.0
[../]
[]
[Materials]
[./elasticity_tensor]
type = ComputeIsotropicElasticityTensor
poissons_ratio = 0.3
youngs_modulus = 1e6
block = '1001 1002'
[../]
[./force_density1]
type = ComputeSmallStrainVariableHorizonMaterialOSPD
temperature = temp
thermal_expansion_coeff = 0.02
stress_free_temperature = 0.5
scalar_out_of_plane_strain = scalar_strain_zz1
block = 1001
[../]
[./force_density2]
type = ComputeSmallStrainVariableHorizonMaterialOSPD
temperature = temp
thermal_expansion_coeff = 0.02
stress_free_temperature = 0.5
scalar_out_of_plane_strain = scalar_strain_zz2
block = 1002
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
solve_type = PJFNK
line_search = none
l_tol = 1e-8
nl_rel_tol = 1e-12
start_time = 0.0
end_time = 1.0
[]
[Outputs]
exodus = true
file_base = generalized_plane_strain_squares_OSPD
[]
(test/tests/mesh_modifiers/transform/rotate_and_scale.i)
[Mesh]
[file]
type = FileMeshGenerator
file = cylinder.e
[]
[rotate]
type = TransformGenerator
input = file
transform = ROTATE
vector_value = '0 90 0'
[]
[scale]
type = TransformGenerator
input = rotate
transform = SCALE
vector_value = '1e2 1e2 1e2'
[]
[]
[Variables]
[u]
order = FIRST
family = LAGRANGE
[]
[]
[Kernels]
[diff]
type = Diffusion
variable = u
[]
[]
[BCs]
[left]
type = DirichletBC
variable = u
boundary = 1
value = 0
[]
[right]
type = DirichletBC
variable = u
boundary = 2
value = 1
[]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
[]
[Outputs]
exodus = true
[]
(test/tests/meshgenerators/sideset_around_subdomain_generator/around.i)
[Mesh]
[./fmg]
type = FileMeshGenerator
file = twoblocks.e
[]
[./block_1]
type = SideSetsAroundSubdomainGenerator
input = fmg
block = 'left'
new_boundary = 'hull_1'
[]
[./block_2]
type = SideSetsAroundSubdomainGenerator
input = block_1
block = 'right'
new_boundary = 'hull_2'
[]
[]
[Outputs]
exodus = true
[]
(test/tests/mesh_modifiers/add_extra_nodeset/extra_nodeset_coord_test.i)
[Mesh]
[file]
type = FileMeshGenerator
file = square.e
[]
[middle_node]
type = ExtraNodesetGenerator
input = file
new_boundary = 'middle_node'
coord = '0.5 0.5'
[]
[]
[Variables]
active = 'u'
[u]
order = FIRST
family = LAGRANGE
[]
[]
[Kernels]
active = 'diff'
[diff]
type = Diffusion
variable = u
[]
[]
[BCs]
active = 'left right middle'
[left]
type = DirichletBC
variable = u
boundary = 1
value = 0
[]
[right]
type = DirichletBC
variable = u
boundary = 2
value = 1
[]
[middle]
type = DirichletBC
variable = u
boundary = 'middle_node'
value = -1
[]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
[]
[Outputs]
file_base = out
exodus = true
[]
(test/tests/meshgenerators/add_all_side_sets_generators/less_simple.i)
[Mesh]
[read]
type = FileMeshGenerator
file = reactor.e
[]
[block_1]
type = AllSideSetsByNormalsGenerator
input = read
[]
[]
# This input file is intended to be run with the "--mesh-only" option so
# no other sections are required
(modules/porous_flow/examples/restart/gas_injection.i)
# Using the results from the equilibrium run to provide the initial condition for
# porepressure, we now inject a gas phase into the brine-saturated reservoir. In this
# example, where the mesh used is identical to the mesh used in gravityeq.i, we can use
# the basic restart capability by simply setting the initial condition for porepressure
# using the results from gravityeq.i.
#
# Even though the gravity equilibrium is established using a 2D mesh, in this example,
# we shift the mesh 0.1 m to the right and rotate it about the Y axis to make a 2D radial
# model.
#
# Methane injection takes place over the surface of the hole created by rotating the mesh,
# and hence the injection area is 2 pi r h. We can calculate this using an AreaPostprocessor,
# and then use this in a ParsedFunction to calculate the injection rate so that 10 kg/s of
# methane is injected.
#
# Results can be improved by uniformly refining the initial mesh.
#
# Note: as this example uses the results from a previous simulation, gravityeq.i MUST be
# run before running this input file.
[Mesh]
uniform_refine = 1
[file]
type = FileMeshGenerator
file = gravityeq_out.e
[]
[translate]
type = TransformGenerator
transform = TRANSLATE
vector_value = '0.1 0 0'
input = file
[]
[]
[Problem]
coord_type = RZ
rz_coord_axis = Y
[]
[GlobalParams]
PorousFlowDictator = dictator
gravity = '0 -9.81 0'
temperature_unit = Celsius
[]
[Variables]
[pp_liq]
initial_from_file_var = porepressure
[]
[sat_gas]
initial_condition = 0
[]
[]
[AuxVariables]
[temperature]
initial_condition = 50
[]
[xnacl]
initial_condition = 0.1
[]
[brine_density]
family = MONOMIAL
order = CONSTANT
[]
[methane_density]
family = MONOMIAL
order = CONSTANT
[]
[massfrac_ph0_sp0]
initial_condition = 1
[]
[massfrac_ph1_sp0]
initial_condition = 0
[]
[pp_gas]
family = MONOMIAL
order = CONSTANT
[]
[sat_liq]
family = MONOMIAL
order = CONSTANT
[]
[]
[Kernels]
[mass0]
type = PorousFlowMassTimeDerivative
variable = pp_liq
[]
[flux0]
type = PorousFlowAdvectiveFlux
variable = pp_liq
[]
[mass1]
type = PorousFlowMassTimeDerivative
variable = sat_gas
fluid_component = 1
[]
[flux1]
type = PorousFlowAdvectiveFlux
variable = sat_gas
fluid_component = 1
[]
[]
[AuxKernels]
[brine_density]
type = PorousFlowPropertyAux
property = density
variable = brine_density
execute_on = 'initial timestep_end'
[]
[methane_density]
type = PorousFlowPropertyAux
property = density
variable = methane_density
phase = 1
execute_on = 'initial timestep_end'
[]
[pp_gas]
type = PorousFlowPropertyAux
property = pressure
phase = 1
variable = pp_gas
execute_on = 'initial timestep_end'
[]
[sat_liq]
type = PorousFlowPropertyAux
property = saturation
variable = sat_liq
execute_on = 'initial timestep_end'
[]
[]
[BCs]
[gas_injection]
type = PorousFlowSink
boundary = left
variable = sat_gas
flux_function = injection_rate
fluid_phase = 1
[]
[brine_out]
type = PorousFlowPiecewiseLinearSink
boundary = right
variable = pp_liq
multipliers = '0 1e9'
pt_vals = '0 1e9'
fluid_phase = 0
flux_function = 1e-6
use_mobility = true
[]
[]
[Functions]
[injection_rate]
type = ParsedFunction
vals = injection_area
vars = area
value = '-10/area'
[]
[]
[UserObjects]
[dictator]
type = PorousFlowDictator
porous_flow_vars = 'pp_liq sat_gas'
number_fluid_phases = 2
number_fluid_components = 2
[]
[pc]
type = PorousFlowCapillaryPressureVG
alpha = 1e-5
m = 0.5
sat_lr = 0.2
[]
[]
[Modules]
[FluidProperties]
[brine]
type = BrineFluidProperties
[]
[methane]
type = MethaneFluidProperties
[]
[methane_tab]
type = TabulatedFluidProperties
fp = methane
save_file = false
[]
[]
[]
[Materials]
[temperature]
type = PorousFlowTemperature
temperature = temperature
[]
[ps]
type = PorousFlow2PhasePS
phase0_porepressure = pp_liq
phase1_saturation = sat_gas
capillary_pressure = pc
[]
[massfrac]
type = PorousFlowMassFraction
mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
[]
[brine]
type = PorousFlowBrine
compute_enthalpy = false
compute_internal_energy = false
xnacl = xnacl
phase = 0
[]
[methane]
type = PorousFlowSingleComponentFluid
compute_enthalpy = false
compute_internal_energy = false
fp = methane_tab
phase = 1
[]
[porosity]
type = PorousFlowPorosityConst
porosity = 0.1
[]
[permeability]
type = PorousFlowPermeabilityConst
permeability = '1e-13 0 0 0 1e-13 0 0 0 1e-13'
[]
[relperm_liq]
type = PorousFlowRelativePermeabilityCorey
n = 2
phase = 0
s_res = 0.2
sum_s_res = 0.3
[]
[relperm_gas]
type = PorousFlowRelativePermeabilityCorey
n = 2
phase = 1
s_res = 0.1
sum_s_res = 0.3
[]
[]
[Preconditioning]
[smp]
type = SMP
full = true
petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type'
petsc_options_value = ' asm lu NONZERO'
[]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1e8
nl_abs_tol = 1e-12
nl_rel_tol = 1e-06
nl_max_its = 20
dtmax = 1e6
[TimeStepper]
type = IterationAdaptiveDT
dt = 1e1
[]
[]
[Postprocessors]
[mass_ph0]
type = PorousFlowFluidMass
fluid_component = 0
execute_on = 'initial timestep_end'
[]
[mass_ph1]
type = PorousFlowFluidMass
fluid_component = 1
execute_on = 'initial timestep_end'
[]
[injection_area]
type = AreaPostprocessor
boundary = left
execute_on = initial
[]
[]
[Outputs]
execute_on = 'initial timestep_end'
exodus = true
perf_graph = true
checkpoint = true
[]
(modules/navier_stokes/test/tests/finite_volume/cns/pressure_outlet/subsonic_nozzle_fixed_inflow_hllc.i)
inlet_vel = 120
rho_in = 0.8719748696
H_in = 4.0138771448e+05
gamma = 1.4
R = 8.3145
molar_mass = 29e-3
R_specific = ${fparse R / molar_mass}
cp = ${fparse gamma * R_specific / (gamma - 1)}
cv = ${fparse cp / gamma}
T_in = ${fparse H_in / gamma / cv}
mass_flux = ${fparse inlet_vel * rho_in}
outlet_pressure = 0.9e5
[GlobalParams]
fp = fp
[]
[Debug]
show_material_props = true
[]
[Mesh]
[file]
type = FileMeshGenerator
file = subsonic_nozzle.e
[]
[]
[Modules]
[FluidProperties]
[fp]
type = IdealGasFluidProperties
[]
[]
[]
[Variables]
[rho]
family = MONOMIAL
order = CONSTANT
fv = true
initial_condition = 0.8719748696
[]
[rho_u]
family = MONOMIAL
order = CONSTANT
fv = true
initial_condition = 1e-4
[]
[rho_v]
family = MONOMIAL
order = CONSTANT
fv = true
[]
[rho_E]
family = MONOMIAL
order = CONSTANT
fv = true
initial_condition = 2.5e5
[]
[]
[FVKernels]
# Mass conservation
[mass_time]
type = FVTimeKernel
variable = rho
[]
[mass_advection]
type = CNSFVMassHLLC
variable = rho
[]
# Momentum x conservation
[momentum_x_time]
type = FVTimeKernel
variable = rho_u
[]
[momentum_x_advection]
type = CNSFVMomentumHLLC
variable = rho_u
momentum_component = x
[]
# Momentum y conservation
[momentum_y_time]
type = FVTimeKernel
variable = rho_v
[]
[momentum_y_advection]
type = CNSFVMomentumHLLC
variable = rho_v
momentum_component = y
[]
# Fluid energy conservation
[fluid_energy_time]
type = FVTimeKernel
variable = rho_E
[]
[fluid_energy_advection]
type = CNSFVFluidEnergyHLLC
variable = rho_E
[]
[]
[FVBCs]
## inflow boundaries
[mass_inflow]
type = CNSFVHLLCSpecifiedMassFluxAndTemperatureMassBC
variable = rho
boundary = left
rhou = ${mass_flux}
rhov = 0
temperature = ${T_in}
[]
[momentum_x_inflow]
type = CNSFVHLLCSpecifiedMassFluxAndTemperatureMomentumBC
variable = rho_u
boundary = left
rhou = ${mass_flux}
rhov = 0
temperature = ${T_in}
momentum_component = x
[]
[momentum_y_inflow]
type = CNSFVHLLCSpecifiedMassFluxAndTemperatureMomentumBC
variable = rho_v
boundary = left
rhou = ${mass_flux}
rhov = 0
temperature = ${T_in}
momentum_component = y
[]
[fluid_energy_inflow]
type = CNSFVHLLCSpecifiedMassFluxAndTemperatureFluidEnergyBC
variable = rho_E
boundary = left
rhou = ${mass_flux}
rhov = 0
temperature = ${T_in}
[]
## outflow conditions
[mass_outflow]
type = CNSFVHLLCSpecifiedPressureMassBC
variable = rho
boundary = right
pressure = ${outlet_pressure}
[]
[momentum_x_outflow]
type = CNSFVHLLCSpecifiedPressureMomentumBC
variable = rho_u
boundary = right
momentum_component = x
pressure = ${outlet_pressure}
[]
[momentum_y_outflow]
type = CNSFVHLLCSpecifiedPressureMomentumBC
variable = rho_v
boundary = right
momentum_component = y
pressure = ${outlet_pressure}
[]
[fluid_energy_outflow]
type = CNSFVHLLCSpecifiedPressureFluidEnergyBC
variable = rho_E
boundary = right
pressure = ${outlet_pressure}
[]
# wall conditions
[momentum_x_pressure_wall]
type = CNSFVMomImplicitPressureBC
variable = rho_u
momentum_component = x
boundary = wall
[]
[momentum_y_pressure_wall]
type = CNSFVMomImplicitPressureBC
variable = rho_v
momentum_component = y
boundary = wall
[]
[]
[AuxVariables]
[Ma]
family = MONOMIAL
order = CONSTANT
[]
[p]
family = MONOMIAL
order = CONSTANT
[]
[Ma_layered]
family = MONOMIAL
order = CONSTANT
[]
[]
[UserObjects]
[layered_Ma_UO]
type = LayeredAverage
variable = Ma
num_layers = 10
direction = x
[]
[]
[AuxKernels]
[Ma_aux]
type = NSMachAux
variable = Ma
fluid_properties = fp
use_material_properties = true
[]
[p_aux]
type = ADMaterialRealAux
variable = p
property = pressure
[]
[Ma_layered_aux]
type = SpatialUserObjectAux
variable = Ma_layered
user_object = layered_Ma_UO
[]
[]
[Materials]
[var_mat]
type = ConservedVarValuesMaterial
rho = rho
rhou = rho_u
rhov = rho_v
rho_et = rho_E
[]
[sound_speed]
type = SoundspeedMat
[]
[]
[Postprocessors]
[outflow_Ma]
type = SideAverageValue
variable = Ma
boundary = right
[]
[outflow_pressure]
type = SideAverageValue
variable = p
boundary = right
[]
[]
[Preconditioning]
[smp]
type = SMP
full = true
petsc_options_iname = '-pc_type'
petsc_options_value = 'lu'
[]
[]
[Executioner]
type = Transient
end_time = 10
solve_type = NEWTON
nl_abs_tol = 1e-7
[TimeIntegrator]
type = ImplicitEuler
[]
[TimeStepper]
type = IterationAdaptiveDT
dt = 5e-3
optimal_iterations = 6
growth_factor = 1.5
[]
[]
[VectorPostprocessors]
[Ma_layered]
type = LineValueSampler
variable = Ma_layered
start_point = '0 0 0'
end_point = '3 0 0'
num_points = 100
sort_by = x
[]
[]
[Outputs]
[out]
type = Exodus
execute_on = 'final'
[]
[]
(modules/porous_flow/examples/coal_mining/fine_with_fluid.i)
#################################################################
#
# NOTE:
# The mesh for this model is too large for the MOOSE repository
# so is kept in the the large_media submodule
#
#################################################################
#
# Strata deformation and fluid flow aaround a coal mine - 3D model
#
# A "half model" is used. The mine is 400m deep and
# just the roof is studied (-400<=z<=0). The mining panel
# sits between 0<=x<=150, and 0<=y<=1000, so this simulates
# a coal panel that is 300m wide and 1000m long. The outer boundaries
# are 1km from the excavation boundaries.
#
# The excavation takes 0.5 years.
#
# The boundary conditions for this simulation are:
# - disp_x = 0 at x=0 and x=1150
# - disp_y = 0 at y=-1000 and y=1000
# - disp_z = 0 at z=-400, but there is a time-dependent
# Young modulus that simulates excavation
# - wc_x = 0 at y=-1000 and y=1000
# - wc_y = 0 at x=0 and x=1150
# - no flow at x=0, z=-400 and z=0
# - fixed porepressure at y=-1000, y=1000 and x=1150
# That is, rollers on the sides, free at top,
# and prescribed at bottom in the unexcavated portion.
#
# A single-phase unsaturated fluid is used.
#
# The small strain formulation is used.
#
# All stresses are measured in MPa, and time units are measured in years.
#
# The initial porepressure is hydrostatic with P=0 at z=0, so
# Porepressure ~ - 0.01*z MPa, where the fluid has density 1E3 kg/m^3 and
# gravity = = 10 m.s^-2 = 1E-5 MPa m^2/kg.
# To be more accurate, i use
# Porepressure = -bulk * log(1 + g*rho0*z/bulk)
# where bulk=2E3 MPa and rho0=1Ee kg/m^3.
# The initial stress is consistent with the weight force from undrained
# density 2500 kg/m^3, and fluid porepressure, and a Biot coefficient of 0.7, ie,
# stress_zz^effective = 0.025*z + 0.7 * initial_porepressure
# The maximum and minimum principal horizontal effective stresses are
# assumed to be equal to 0.8*stress_zz.
#
# Material properties:
# Young's modulus = 8 GPa
# Poisson's ratio = 0.25
# Cosserat layer thickness = 1 m
# Cosserat-joint normal stiffness = large
# Cosserat-joint shear stiffness = 1 GPa
# MC cohesion = 2 MPa
# MC friction angle = 35 deg
# MC dilation angle = 8 deg
# MC tensile strength = 1 MPa
# MC compressive strength = 100 MPa
# WeakPlane cohesion = 0.1 MPa
# WeakPlane friction angle = 30 deg
# WeakPlane dilation angle = 10 deg
# WeakPlane tensile strength = 0.1 MPa
# WeakPlane compressive strength = 100 MPa softening to 1 MPa at strain = 1
# Fluid density at zero porepressure = 1E3 kg/m^3
# Fluid bulk modulus = 2E3 MPa
# Fluid viscosity = 1.1E-3 Pa.s = 1.1E-9 MPa.s = 3.5E-17 MPa.year
#
[GlobalParams]
perform_finite_strain_rotations = false
displacements = 'disp_x disp_y disp_z'
Cosserat_rotations = 'wc_x wc_y wc_z'
PorousFlowDictator = dictator
biot_coefficient = 0.7
[]
[Mesh]
[file]
type = FileMeshGenerator
file = fine.e
[]
[xmin]
type = SideSetsAroundSubdomainGenerator
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
new_boundary = xmin
normal = '-1 0 0'
input = file
[]
[xmax]
type = SideSetsAroundSubdomainGenerator
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
new_boundary = xmax
normal = '1 0 0'
input = xmin
[]
[ymin]
type = SideSetsAroundSubdomainGenerator
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
new_boundary = ymin
normal = '0 -1 0'
input = xmax
[]
[ymax]
type = SideSetsAroundSubdomainGenerator
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
new_boundary = ymax
normal = '0 1 0'
input = ymin
[]
[zmax]
type = SideSetsAroundSubdomainGenerator
block = 30
new_boundary = zmax
normal = '0 0 1'
input = ymax
[]
[zmin]
type = SideSetsAroundSubdomainGenerator
block = 2
new_boundary = zmin
normal = '0 0 -1'
input = zmax
[]
[excav]
type = SubdomainBoundingBoxGenerator
input = zmin
block_id = 1
bottom_left = '0 0 -400'
top_right = '150 1000 -397'
[]
[roof]
type = SideSetsBetweenSubdomainsGenerator
primary_block = 3
paired_block = 1
input = excav
new_boundary = roof
[]
[]
[Variables]
[disp_x]
[]
[disp_y]
[]
[disp_z]
[]
[wc_x]
[]
[wc_y]
[]
[porepressure]
scaling = 1E-5
[]
[]
[ICs]
[porepressure]
type = FunctionIC
variable = porepressure
function = ini_pp
[]
[]
[Kernels]
[cx_elastic]
type = CosseratStressDivergenceTensors
use_displaced_mesh = false
variable = disp_x
component = 0
[]
[cy_elastic]
type = CosseratStressDivergenceTensors
use_displaced_mesh = false
variable = disp_y
component = 1
[]
[cz_elastic]
type = CosseratStressDivergenceTensors
use_displaced_mesh = false
variable = disp_z
component = 2
[]
[x_couple]
type = StressDivergenceTensors
use_displaced_mesh = false
variable = wc_x
displacements = 'wc_x wc_y wc_z'
component = 0
base_name = couple
[]
[y_couple]
type = StressDivergenceTensors
use_displaced_mesh = false
variable = wc_y
displacements = 'wc_x wc_y wc_z'
component = 1
base_name = couple
[]
[x_moment]
type = MomentBalancing
use_displaced_mesh = false
variable = wc_x
component = 0
[]
[y_moment]
type = MomentBalancing
use_displaced_mesh = false
variable = wc_y
component = 1
[]
[gravity]
type = Gravity
use_displaced_mesh = false
variable = disp_z
value = -10E-6 # remember this is in MPa
[]
[poro_x]
type = PorousFlowEffectiveStressCoupling
use_displaced_mesh = false
variable = disp_x
component = 0
[]
[poro_y]
type = PorousFlowEffectiveStressCoupling
use_displaced_mesh = false
variable = disp_y
component = 1
[]
[poro_z]
type = PorousFlowEffectiveStressCoupling
use_displaced_mesh = false
component = 2
variable = disp_z
[]
[poro_vol_exp]
type = PorousFlowMassVolumetricExpansion
use_displaced_mesh = false
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
variable = porepressure
fluid_component = 0
[]
[mass0]
type = PorousFlowMassTimeDerivative
use_displaced_mesh = false
fluid_component = 0
variable = porepressure
[]
[flux]
type = PorousFlowAdvectiveFlux
use_displaced_mesh = false
variable = porepressure
gravity = '0 0 -10E-6'
fluid_component = 0
[]
[]
[AuxVariables]
[saturation]
order = CONSTANT
family = MONOMIAL
[]
[darcy_x]
order = CONSTANT
family = MONOMIAL
[]
[darcy_y]
order = CONSTANT
family = MONOMIAL
[]
[darcy_z]
order = CONSTANT
family = MONOMIAL
[]
[porosity]
order = CONSTANT
family = MONOMIAL
[]
[wc_z]
[]
[stress_xx]
order = CONSTANT
family = MONOMIAL
[]
[stress_xy]
order = CONSTANT
family = MONOMIAL
[]
[stress_xz]
order = CONSTANT
family = MONOMIAL
[]
[stress_yx]
order = CONSTANT
family = MONOMIAL
[]
[stress_yy]
order = CONSTANT
family = MONOMIAL
[]
[stress_yz]
order = CONSTANT
family = MONOMIAL
[]
[stress_zx]
order = CONSTANT
family = MONOMIAL
[]
[stress_zy]
order = CONSTANT
family = MONOMIAL
[]
[stress_zz]
order = CONSTANT
family = MONOMIAL
[]
[total_strain_xx]
order = CONSTANT
family = MONOMIAL
[]
[total_strain_xy]
order = CONSTANT
family = MONOMIAL
[]
[total_strain_xz]
order = CONSTANT
family = MONOMIAL
[]
[total_strain_yx]
order = CONSTANT
family = MONOMIAL
[]
[total_strain_yy]
order = CONSTANT
family = MONOMIAL
[]
[total_strain_yz]
order = CONSTANT
family = MONOMIAL
[]
[total_strain_zx]
order = CONSTANT
family = MONOMIAL
[]
[total_strain_zy]
order = CONSTANT
family = MONOMIAL
[]
[total_strain_zz]
order = CONSTANT
family = MONOMIAL
[]
[perm_xx]
order = CONSTANT
family = MONOMIAL
[]
[perm_yy]
order = CONSTANT
family = MONOMIAL
[]
[perm_zz]
order = CONSTANT
family = MONOMIAL
[]
[mc_shear]
order = CONSTANT
family = MONOMIAL
[]
[mc_tensile]
order = CONSTANT
family = MONOMIAL
[]
[wp_shear]
order = CONSTANT
family = MONOMIAL
[]
[wp_tensile]
order = CONSTANT
family = MONOMIAL
[]
[wp_shear_f]
order = CONSTANT
family = MONOMIAL
[]
[wp_tensile_f]
order = CONSTANT
family = MONOMIAL
[]
[mc_shear_f]
order = CONSTANT
family = MONOMIAL
[]
[mc_tensile_f]
order = CONSTANT
family = MONOMIAL
[]
[]
[AuxKernels]
[saturation_water]
type = PorousFlowPropertyAux
variable = saturation
property = saturation
phase = 0
execute_on = timestep_end
[]
[darcy_x]
type = PorousFlowDarcyVelocityComponent
variable = darcy_x
gravity = '0 0 -10E-6'
component = x
[]
[darcy_y]
type = PorousFlowDarcyVelocityComponent
variable = darcy_y
gravity = '0 0 -10E-6'
component = y
[]
[darcy_z]
type = PorousFlowDarcyVelocityComponent
variable = darcy_z
gravity = '0 0 -10E-6'
component = z
[]
[porosity]
type = PorousFlowPropertyAux
property = porosity
variable = porosity
execute_on = timestep_end
[]
[stress_xx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xx
index_i = 0
index_j = 0
execute_on = timestep_end
[]
[stress_xy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xy
index_i = 0
index_j = 1
execute_on = timestep_end
[]
[stress_xz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xz
index_i = 0
index_j = 2
execute_on = timestep_end
[]
[stress_yx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yx
index_i = 1
index_j = 0
execute_on = timestep_end
[]
[stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
execute_on = timestep_end
[]
[stress_yz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yz
index_i = 1
index_j = 2
execute_on = timestep_end
[]
[stress_zx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zx
index_i = 2
index_j = 0
execute_on = timestep_end
[]
[stress_zy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zy
index_i = 2
index_j = 1
execute_on = timestep_end
[]
[stress_zz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zz
index_i = 2
index_j = 2
execute_on = timestep_end
[]
[total_strain_xx]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_xx
index_i = 0
index_j = 0
execute_on = timestep_end
[]
[total_strain_xy]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_xy
index_i = 0
index_j = 1
execute_on = timestep_end
[]
[total_strain_xz]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_xz
index_i = 0
index_j = 2
execute_on = timestep_end
[]
[total_strain_yx]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_yx
index_i = 1
index_j = 0
execute_on = timestep_end
[]
[total_strain_yy]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_yy
index_i = 1
index_j = 1
execute_on = timestep_end
[]
[total_strain_yz]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_yz
index_i = 1
index_j = 2
execute_on = timestep_end
[]
[total_strain_zx]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_zx
index_i = 2
index_j = 0
execute_on = timestep_end
[]
[total_strain_zy]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_zy
index_i = 2
index_j = 1
execute_on = timestep_end
[]
[total_strain_zz]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_zz
index_i = 2
index_j = 2
execute_on = timestep_end
[]
[perm_xx]
type = PorousFlowPropertyAux
property = permeability
variable = perm_xx
row = 0
column = 0
execute_on = timestep_end
[]
[perm_yy]
type = PorousFlowPropertyAux
property = permeability
variable = perm_yy
row = 1
column = 1
execute_on = timestep_end
[]
[perm_zz]
type = PorousFlowPropertyAux
property = permeability
variable = perm_zz
row = 2
column = 2
execute_on = timestep_end
[]
[mc_shear]
type = MaterialStdVectorAux
index = 0
property = mc_plastic_internal_parameter
variable = mc_shear
execute_on = timestep_end
[]
[mc_tensile]
type = MaterialStdVectorAux
index = 1
property = mc_plastic_internal_parameter
variable = mc_tensile
execute_on = timestep_end
[]
[wp_shear]
type = MaterialStdVectorAux
index = 0
property = wp_plastic_internal_parameter
variable = wp_shear
execute_on = timestep_end
[]
[wp_tensile]
type = MaterialStdVectorAux
index = 1
property = wp_plastic_internal_parameter
variable = wp_tensile
execute_on = timestep_end
[]
[mc_shear_f]
type = MaterialStdVectorAux
index = 6
property = mc_plastic_yield_function
variable = mc_shear_f
execute_on = timestep_end
[]
[mc_tensile_f]
type = MaterialStdVectorAux
index = 0
property = mc_plastic_yield_function
variable = mc_tensile_f
execute_on = timestep_end
[]
[wp_shear_f]
type = MaterialStdVectorAux
index = 0
property = wp_plastic_yield_function
variable = wp_shear_f
execute_on = timestep_end
[]
[wp_tensile_f]
type = MaterialStdVectorAux
index = 1
property = wp_plastic_yield_function
variable = wp_tensile_f
execute_on = timestep_end
[]
[]
[BCs]
[no_x]
type = DirichletBC
variable = disp_x
boundary = 'xmin xmax'
value = 0.0
[]
[no_y]
type = DirichletBC
variable = disp_y
boundary = 'ymin ymax'
value = 0.0
[]
[no_z]
type = DirichletBC
variable = disp_z
boundary = zmin
value = 0.0
[]
[no_wc_x]
type = DirichletBC
variable = wc_x
boundary = 'ymin ymax'
value = 0.0
[]
[no_wc_y]
type = DirichletBC
variable = wc_y
boundary = 'xmin xmax'
value = 0.0
[]
[fix_porepressure]
type = FunctionDirichletBC
variable = porepressure
boundary = 'ymin ymax xmax'
function = ini_pp
[]
[roof_porepressure]
type = PorousFlowPiecewiseLinearSink
variable = porepressure
pt_vals = '-1E3 1E3'
multipliers = '-1 1'
fluid_phase = 0
flux_function = roof_conductance
boundary = roof
[]
[roof]
type = StickyBC
variable = disp_z
min_value = -3.0
boundary = roof
[]
[]
[Functions]
[ini_pp]
type = ParsedFunction
vars = 'bulk p0 g rho0'
vals = '2E3 0.0 1E-5 1E3'
value = '-bulk*log(exp(-p0/bulk)+g*rho0*z/bulk)'
[]
[ini_xx]
type = ParsedFunction
vars = 'bulk p0 g rho0 biot'
vals = '2E3 0.0 1E-5 1E3 0.7'
value = '0.8*(2500*10E-6*z+biot*(-bulk*log(exp(-p0/bulk)+g*rho0*z/bulk)))'
[]
[ini_zz]
type = ParsedFunction
vars = 'bulk p0 g rho0 biot'
vals = '2E3 0.0 1E-5 1E3 0.7'
value = '2500*10E-6*z+biot*(-bulk*log(exp(-p0/bulk)+g*rho0*z/bulk))'
[]
[excav_sideways]
type = ParsedFunction
vars = 'end_t ymin ymax minval maxval slope'
vals = '0.5 0 1000.0 1E-9 1 10'
# excavation face at ymin+(ymax-ymin)*min(t/end_t,1)
# slope is the distance over which the modulus reduces from maxval to minval
value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),minval,if(y<ymin+(ymax-ymin)*min(t/end_t,1)+slope,minval+(maxval-minval)*(y-(ymin+(ymax-ymin)*min(t/end_t,1)))/slope,maxval))'
[]
[density_sideways]
type = ParsedFunction
vars = 'end_t ymin ymax minval maxval'
vals = '0.5 0 1000.0 0 2500'
value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),minval,maxval)'
[]
[roof_conductance]
type = ParsedFunction
vars = 'end_t ymin ymax maxval minval'
vals = '0.5 0 1000.0 1E7 0'
value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),maxval,minval)'
[]
[]
[UserObjects]
[dictator]
type = PorousFlowDictator
porous_flow_vars = 'porepressure disp_x disp_y disp_z'
number_fluid_phases = 1
number_fluid_components = 1
[]
[pc]
type = PorousFlowCapillaryPressureVG
m = 0.5
alpha = 1 # MPa^-1
[]
[mc_coh_strong_harden]
type = TensorMechanicsHardeningExponential
value_0 = 1.99 # MPa
value_residual = 2.01 # MPa
rate = 1.0
[]
[mc_fric]
type = TensorMechanicsHardeningConstant
value = 0.61 # 35deg
[]
[mc_dil]
type = TensorMechanicsHardeningConstant
value = 0.15 # 8deg
[]
[mc_tensile_str_strong_harden]
type = TensorMechanicsHardeningExponential
value_0 = 1.0 # MPa
value_residual = 1.0 # MPa
rate = 1.0
[]
[mc_compressive_str]
type = TensorMechanicsHardeningCubic
value_0 = 100 # Large!
value_residual = 100
internal_limit = 0.1
[]
[wp_coh_harden]
type = TensorMechanicsHardeningCubic
value_0 = 0.05
value_residual = 0.05
internal_limit = 10
[]
[wp_tan_fric]
type = TensorMechanicsHardeningConstant
value = 0.26 # 15deg
[]
[wp_tan_dil]
type = TensorMechanicsHardeningConstant
value = 0.18 # 10deg
[]
[wp_tensile_str_harden]
type = TensorMechanicsHardeningCubic
value_0 = 0.05
value_residual = 0.05
internal_limit = 10
[]
[wp_compressive_str_soften]
type = TensorMechanicsHardeningCubic
value_0 = 100
value_residual = 1
internal_limit = 1.0
[]
[]
[Modules]
[FluidProperties]
[simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 2E3
density0 = 1000
thermal_expansion = 0
viscosity = 3.5E-17
[]
[]
[]
[Materials]
[temperature]
type = PorousFlowTemperature
[]
[eff_fluid_pressure]
type = PorousFlowEffectiveFluidPressure
[]
[vol_strain]
type = PorousFlowVolumetricStrain
[]
[ppss]
type = PorousFlow1PhaseP
porepressure = porepressure
capillary_pressure = pc
[]
[massfrac]
type = PorousFlowMassFraction
[]
[simple_fluid]
type = PorousFlowSingleComponentFluid
fp = simple_fluid
phase = 0
[]
[porosity_for_aux]
type = PorousFlowPorosity
at_nodes = false
fluid = true
mechanical = true
ensure_positive = true
porosity_zero = 0.02
solid_bulk = 5.3333E3
[]
[porosity_bulk]
type = PorousFlowPorosity
fluid = true
mechanical = true
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
ensure_positive = true
porosity_zero = 0.02
solid_bulk = 5.3333E3
[]
[porosity_excav]
type = PorousFlowPorosityConst
block = 1
porosity = 1.0
[]
[permeability_bulk]
type = PorousFlowPermeabilityKozenyCarman
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
poroperm_function = kozeny_carman_phi0
k0 = 1E-15
phi0 = 0.02
n = 2
m = 2
[]
[permeability_excav]
type = PorousFlowPermeabilityConst
block = 1
permeability = '0 0 0 0 0 0 0 0 0'
[]
[relperm]
type = PorousFlowRelativePermeabilityCorey
n = 4
s_res = 0.4
sum_s_res = 0.4
phase = 0
[]
[elasticity_tensor_0]
type = ComputeLayeredCosseratElasticityTensor
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
young = 8E3 # MPa
poisson = 0.25
layer_thickness = 1.0
joint_normal_stiffness = 1E9 # huge
joint_shear_stiffness = 1E3 # MPa
[]
[elasticity_tensor_1]
type = ComputeLayeredCosseratElasticityTensor
block = 1
young = 8E3 # MPa
poisson = 0.25
layer_thickness = 1.0
joint_normal_stiffness = 1E9 # huge
joint_shear_stiffness = 1E3 # MPa
elasticity_tensor_prefactor = excav_sideways
[]
[strain]
type = ComputeCosseratIncrementalSmallStrain
eigenstrain_names = ini_stress
[]
[ini_stress]
type = ComputeEigenstrainFromInitialStress
eigenstrain_name = ini_stress
initial_stress = 'ini_xx 0 0 0 ini_xx 0 0 0 ini_zz'
[]
[stress_0]
type = ComputeMultipleInelasticCosseratStress
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
inelastic_models = 'mc wp'
cycle_models = true
relative_tolerance = 2.0
absolute_tolerance = 1E6
max_iterations = 1
tangent_operator = nonlinear
perform_finite_strain_rotations = false
[]
[stress_1]
type = ComputeMultipleInelasticCosseratStress
block = 1
inelastic_models = ''
relative_tolerance = 2.0
absolute_tolerance = 1E6
max_iterations = 1
tangent_operator = nonlinear
perform_finite_strain_rotations = false
[]
[mc]
type = CappedMohrCoulombCosseratStressUpdate
warn_about_precision_loss = false
host_youngs_modulus = 8E3
host_poissons_ratio = 0.25
base_name = mc
tensile_strength = mc_tensile_str_strong_harden
compressive_strength = mc_compressive_str
cohesion = mc_coh_strong_harden
friction_angle = mc_fric
dilation_angle = mc_dil
max_NR_iterations = 100000
smoothing_tol = 0.1 # MPa # Must be linked to cohesion
yield_function_tol = 1E-9 # MPa. this is essentially the lowest possible without lots of precision loss
perfect_guess = true
min_step_size = 1.0
[]
[wp]
type = CappedWeakPlaneCosseratStressUpdate
warn_about_precision_loss = false
base_name = wp
cohesion = wp_coh_harden
tan_friction_angle = wp_tan_fric
tan_dilation_angle = wp_tan_dil
tensile_strength = wp_tensile_str_harden
compressive_strength = wp_compressive_str_soften
max_NR_iterations = 10000
tip_smoother = 0.05
smoothing_tol = 0.05 # MPa # Note, this must be tied to cohesion, otherwise get no possible return at cone apex
yield_function_tol = 1E-11 # MPa. this is essentially the lowest possible without lots of precision loss
perfect_guess = true
min_step_size = 1.0E-3
[]
[undrained_density_0]
type = GenericConstantMaterial
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
prop_names = density
prop_values = 2500
[]
[undrained_density_1]
type = GenericFunctionMaterial
block = 1
prop_names = density
prop_values = density_sideways
[]
[]
[Preconditioning]
[SMP]
type = SMP
full = true
[]
[]
[Postprocessors]
[min_roof_disp]
type = NodalExtremeValue
boundary = roof
value_type = min
variable = disp_z
[]
[min_roof_pp]
type = NodalExtremeValue
boundary = roof
value_type = min
variable = porepressure
[]
[min_surface_disp]
type = NodalExtremeValue
boundary = zmax
value_type = min
variable = disp_z
[]
[min_surface_pp]
type = NodalExtremeValue
boundary = zmax
value_type = min
variable = porepressure
[]
[max_perm_zz]
type = ElementExtremeValue
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
variable = perm_zz
[]
[]
[Executioner]
type = Transient
solve_type = 'NEWTON'
petsc_options = '-snes_converged_reason'
# best overall
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
# best if you don't have mumps:
#petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
#petsc_options_value = ' asm 2 lu gmres 200'
# very basic:
#petsc_options_iname = '-pc_type -ksp_type -ksp_gmres_restart'
#petsc_options_value = ' bjacobi gmres 200'
line_search = bt
nl_abs_tol = 1e-3
nl_rel_tol = 1e-5
l_max_its = 200
nl_max_its = 30
start_time = 0.0
dt = 0.0025
end_time = 0.5
[]
[Outputs]
interval = 1
print_linear_residuals = true
exodus = true
csv = true
console = true
[]
(test/tests/mortar/displaced-gap-conductance-2d-bnd-coupling/gap-conductance-bnd-aux-kernel.i)
[Mesh]
displacements = 'disp_x disp_y'
[file]
type = FileMeshGenerator
file = nodal_normals_test_offset_nonmatching_gap.e
# block 1: left
# block 2: right
[]
[./primary]
input = file
type = LowerDBlockFromSidesetGenerator
sidesets = '2'
new_block_id = '20'
[../]
[./secondary]
input = primary
type = LowerDBlockFromSidesetGenerator
sidesets = '1'
new_block_id = '10'
[../]
[]
[AuxVariables]
[disp_x]
block = '1 2'
[]
[disp_y]
block = '1 2'
[]
[aux_var]
[]
[]
[AuxKernels]
[function_x]
type = FunctionAux
function = '.05 * t'
variable = 'disp_x'
block = '2'
[]
[function_y]
type = FunctionAux
function = '.05 * t'
variable = 'disp_y'
block = '2'
[]
[flux_modifier]
type = StatefulAuxLowerD
variable = 'aux_var'
coupled_variable = 'lambda'
boundary = '1'
[]
[]
[Problem]
kernel_coverage_check = false
[]
[Variables]
[./T]
block = '1 2'
[../]
[./lambda]
block = '10'
family = LAGRANGE
order = FIRST
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = T
boundary = '5'
value = 0
[../]
[./right]
type = DirichletBC
variable = T
boundary = '8'
value = 1
[../]
[]
[Kernels]
[./conduction]
type = Diffusion
variable = T
block = '1 2'
[../]
[]
[Debug]
show_var_residual_norms = 1
[]
[Constraints]
[./mortar]
type = GapHeatConductanceAuxKernel
primary_boundary = 2
secondary_boundary = 1
primary_subdomain = 20
secondary_subdomain = 10
variable = lambda
secondary_variable = T
use_displaced_mesh = true
auxkernel_variable = 'aux_var'
[../]
[]
[Materials]
[constant]
type = ADGenericConstantMaterial
prop_names = 'gap_conductance'
prop_values = '.03'
block = '1 2'
use_displaced_mesh = true
[]
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Executioner]
solve_type = NEWTON
type = Transient
num_steps = 5
petsc_options_iname = '-pc_type -snes_linesearch_type'
petsc_options_value = 'lu basic'
[]
[Outputs]
exodus = true
[dofmap]
type = DOFMap
execute_on = 'initial'
[]
[]
(test/tests/mortar/mortar-q-points/test.i)
[Mesh]
[file]
type = FileMeshGenerator
file = nodal_normals_test_offset_nonmatching_gap.e
[]
[./primary]
input = file
type = LowerDBlockFromSidesetGenerator
sidesets = '2'
new_block_id = '20'
[../]
[./secondary]
input = primary
type = LowerDBlockFromSidesetGenerator
sidesets = '1'
new_block_id = '10'
[../]
uniform_refine = 2
[]
[Problem]
kernel_coverage_check = false
[]
[Variables]
[./T]
block = '1 2'
[../]
[]
[Kernels]
[./conduction]
type = Diffusion
variable = T
block = '1 2'
[../]
[./reaction]
type = Reaction
variable = T
block = '1 2'
[../]
[]
[Constraints]
[./mortar]
type = SpatiallyVaryingSource
primary_boundary = 2
secondary_boundary = 1
primary_subdomain = 20
secondary_subdomain = 10
secondary_variable = T
[../]
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Executioner]
solve_type = NEWTON
type = Steady
[]
[Outputs]
exodus = true
[]
(modules/peridynamics/test/tests/mesh/Error_wrong_bonding_blockID.i)
[Mesh]
type = PeridynamicsMesh
horizon_number = 3
[./fmg]
type = FileMeshGenerator
file = 2D_2blocks.e
[../]
[./gpd]
type = MeshGeneratorPD
input = fmg
retain_fe_mesh = false
bonding_block_pairs = '3 1'
[../]
[]
# This input file is intended to be run with the "--mesh-only" option so
# no other sections are required
(test/tests/mesh/mesh_only/mesh_only.i)
[Mesh]
uniform_refine = 1
[file]
type = FileMeshGenerator
file = chimney_quad.e
[]
[./extrude]
input = file
type = MeshExtruderGenerator
num_layers = 20
extrusion_vector = '0 1e-2 0'
bottom_sideset = '2'
top_sideset = '4'
[../]
[]
# This input file is intended to be run with the "--mesh-only" option so
# no other sections are required
(test/tests/mesh_modifiers/break_mesh_by_blocks/3D/TestBreakMesh_3D_3Block_splitTrue_Auto.i)
[Mesh]
[file]
type = FileMeshGenerator
file = coh3D_3Blocks.e
[]
[breakmesh]
type = BreakMeshByBlockGenerator
input = file
split_interface = true
[]
[]
# This input file is intended to be run with the "--mesh-only" option so
# no other sections are required
(test/tests/meshgenerators/add_all_side_sets_generators/simple.i)
[Mesh]
[read]
type = FileMeshGenerator
file = twoblocks.e
[]
[block_1]
type = AllSideSetsByNormalsGenerator
input = read
[]
[]
# This input file is intended to be run with the "--mesh-only" option so
# no other sections are required
(modules/peridynamics/test/tests/mesh/2D_single_interface_block.i)
# Four disconnected FE mesh blocks are converted to PD mesh blocks
# Interfacial bonds are formed between blocks 1 and 2, 2 and 3, 3 and 4
# All four PD mesh blocks are combined into one block
# All interfacial bonds are gathered into one block
[Mesh]
type = PeridynamicsMesh
horizon_number = 3
[./fmg]
type = FileMeshGenerator
file = 2D_4blocks.e
[../]
[./gpd]
type = MeshGeneratorPD
input = fmg
retain_fe_mesh = false
blocks_to_pd = '1 2 3 4'
merge_pd_blocks = true
bonding_block_pairs = '1 2; 2 3; 3 4'
merge_pd_interfacial_blocks = true
construct_pd_sidesets = true
[../]
[]
# This input file is intended to be run with the "--mesh-only" option so
# no other sections are required
(modules/porous_flow/examples/multiapp_fracture_flow/3dFracture/fracture_only_aperture_changing.i)
# Cold water injection into one side of the fracture network, and production from the other side
injection_rate = 10 # kg/s
[Mesh]
uniform_refine = 0
[cluster34]
type = FileMeshGenerator
file = 'Cluster_34.exo'
[]
[injection_node]
type = BoundingBoxNodeSetGenerator
input = cluster34
bottom_left = '-1000 0 -1000'
top_right = '1000 0.504 1000'
new_boundary = injection_node
[]
[]
[GlobalParams]
PorousFlowDictator = dictator
gravity = '0 0 -9.81E-6' # Note the value, because of pressure_unit
[]
[Variables]
[frac_P]
scaling = 1E6
[]
[frac_T]
initial_condition = 473
[]
[]
[ICs]
[frac_P]
type = FunctionIC
variable = frac_P
function = insitu_pp
[]
[]
[PorousFlowFullySaturated]
coupling_type = ThermoHydro
porepressure = frac_P
temperature = frac_T
fp = water
pressure_unit = MPa
[]
[Kernels]
[toMatrix]
type = PorousFlowHeatMassTransfer
variable = frac_T
v = transferred_matrix_T
transfer_coefficient = heat_transfer_coefficient
save_in = joules_per_s
[]
[]
[AuxVariables]
[heat_transfer_coefficient]
family = MONOMIAL
order = CONSTANT
initial_condition = 0.0
[]
[transferred_matrix_T]
initial_condition = 473
[]
[joules_per_s]
[]
[normal_dirn_x]
family = MONOMIAL
order = CONSTANT
[]
[normal_dirn_y]
family = MONOMIAL
order = CONSTANT
[]
[normal_dirn_z]
family = MONOMIAL
order = CONSTANT
[]
[enclosing_element_normal_length]
family = MONOMIAL
order = CONSTANT
[]
[enclosing_element_normal_thermal_cond]
family = MONOMIAL
order = CONSTANT
[]
[aperture]
family = MONOMIAL
order = CONSTANT
[]
[perm_times_app]
family = MONOMIAL
order = CONSTANT
[]
[density]
family = MONOMIAL
order = CONSTANT
[]
[viscosity]
family = MONOMIAL
order = CONSTANT
[]
[insitu_pp]
[]
[]
[AuxKernels]
[normal_dirn_x_auxk]
type = PorousFlowElementNormal
variable = normal_dirn_x
component = x
[]
[normal_dirn_y]
type = PorousFlowElementNormal
variable = normal_dirn_y
component = y
[]
[normal_dirn_z]
type = PorousFlowElementNormal
variable = normal_dirn_z
component = z
[]
[heat_transfer_coefficient_auxk]
type = ParsedAux
variable = heat_transfer_coefficient
args = 'enclosing_element_normal_length enclosing_element_normal_thermal_cond'
constant_names = h_s
constant_expressions = 1E3 # should be much bigger than thermal_conductivity / L ~ 1
function = 'if(enclosing_element_normal_length = 0, 0, h_s * enclosing_element_normal_thermal_cond * 2 * enclosing_element_normal_length / (h_s * enclosing_element_normal_length * enclosing_element_normal_length + enclosing_element_normal_thermal_cond * 2 * enclosing_element_normal_length))'
[]
[aperture]
type = PorousFlowPropertyAux
variable = aperture
property = porosity
[]
[perm_times_app]
type = PorousFlowPropertyAux
variable = perm_times_app
property = permeability
row = 0
column = 0
[]
[density]
type = PorousFlowPropertyAux
variable = density
property = density
phase = 0
[]
[viscosity]
type = PorousFlowPropertyAux
variable = viscosity
property = viscosity
phase = 0
[]
[insitu_pp]
type = FunctionAux
execute_on = initial
variable = insitu_pp
function = insitu_pp
[]
[]
[BCs]
[inject_heat]
type = DirichletBC
boundary = injection_node
variable = frac_T
value = 373
[]
[]
[DiracKernels]
[inject_fluid]
type = PorousFlowPointSourceFromPostprocessor
mass_flux = ${injection_rate}
point = '58.8124 0.50384 74.7838'
variable = frac_P
[]
[withdraw_fluid]
type = PorousFlowPeacemanBorehole
SumQuantityUO = kg_out_uo
bottom_p_or_t = 10.6 # 1MPa + approx insitu at production point, to prevent aperture closing due to low porepressures
character = 1
line_length = 1
point_file = production.xyz
unit_weight = '0 0 0'
fluid_phase = 0
use_mobility = true
variable = frac_P
[]
[withdraw_heat]
type = PorousFlowPeacemanBorehole
SumQuantityUO = J_out_uo
bottom_p_or_t = 10.6 # 1MPa + approx insitu at production point, to prevent aperture closing due to low porepressures
character = 1
line_length = 1
point_file = production.xyz
unit_weight = '0 0 0'
fluid_phase = 0
use_mobility = true
use_enthalpy = true
variable = frac_T
[]
[]
[UserObjects]
[kg_out_uo]
type = PorousFlowSumQuantity
[]
[J_out_uo]
type = PorousFlowSumQuantity
[]
[]
[Modules]
[FluidProperties]
[true_water]
type = Water97FluidProperties
[]
[water]
type = TabulatedFluidProperties
fp = true_water
temperature_min = 275 # K
temperature_max = 600
interpolated_properties = 'density viscosity enthalpy internal_energy'
fluid_property_file = water97_tabulated.csv
[]
[]
[]
[Materials]
[porosity]
type = PorousFlowPorosityLinear
porosity_ref = 1E-4 # fracture porosity = 1.0, but must include fracture aperture of 1E-4 at P = insitu_pp
P_ref = insitu_pp
P_coeff = 1E-3 # this is in metres/MPa, ie for P_ref = 1/P_coeff, the aperture becomes 1 metre
porosity_min = 1E-5
[]
[permeability]
type = PorousFlowPermeabilityKozenyCarman
k0 = 1E-15 # fracture perm = 1E-11 m^2, but must include fracture aperture of 1E-4
poroperm_function = kozeny_carman_phi0
m = 0
n = 3
phi0 = 1E-4
[]
[internal_energy]
type = PorousFlowMatrixInternalEnergy
density = 2700 # kg/m^3
specific_heat_capacity = 0 # basically no rock inside the fracture
[]
[aq_thermal_conductivity]
type = PorousFlowThermalConductivityIdeal
dry_thermal_conductivity = '0.6E-4 0 0 0 0.6E-4 0 0 0 0.6E-4' # thermal conductivity of water times fracture aperture. This should increase linearly with aperture, but is set constant in this model
[]
[]
[Functions]
[kg_rate]
type = ParsedFunction
vals = 'dt kg_out'
vars = 'dt kg_out'
value = 'kg_out/dt'
[]
[insitu_pp]
type = ParsedFunction
value = '10 - 0.847E-2 * z' # Approximate hydrostatic in MPa
[]
[]
[Postprocessors]
[dt]
type = TimestepSize
outputs = 'none'
[]
[kg_out]
type = PorousFlowPlotQuantity
uo = kg_out_uo
[]
[kg_per_s]
type = FunctionValuePostprocessor
function = kg_rate
[]
[J_out]
type = PorousFlowPlotQuantity
uo = J_out_uo
[]
[TK_out]
type = PointValue
variable = frac_T
point = '101.705 160.459 39.5722'
[]
[P_out]
type = PointValue
variable = frac_P
point = '101.705 160.459 39.5722'
[]
[P_in]
type = PointValue
variable = frac_P
point = '58.8124 0.50384 74.7838'
[]
[]
[VectorPostprocessors]
[heat_transfer_rate]
type = NodalValueSampler
outputs = none
sort_by = id
variable = joules_per_s
[]
[]
[Preconditioning]
[entire_jacobian]
type = SMP
full = true
petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = ' asm lu NONZERO 2 '
[]
[]
[Executioner]
type = Transient
solve_type = NEWTON
[TimeStepper]
type = IterationAdaptiveDT
dt = 1
optimal_iterations = 10
growth_factor = 1.5
timestep_limiting_postprocessor = 1E8
[]
end_time = 1E8
nl_abs_tol = 1E-3
nl_max_its = 20
[]
[Outputs]
print_linear_residuals = false
csv = true
[ex]
type = Exodus
sync_times = '1 10 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900 2000 2100 2200 2300 2400 2500 2600 2700 2800 2900 3000 3100 3200 3300 3400 3500 3600 3700 3800 3900 4000 4100 4200 4300 4400 4500 4600 4700 4800 4900 5000 5100 5200 5300 5400 5500 5600 5700 5800 5900 6000 6100 6200 6300 6400 6500 6600 6700 6800 6900 7000 7100 7200 7300 7400 7500 7600 7700 7800 7900 8000 8100 8200 8300 8400 8500 8600 8700 8800 8900 9000 10000 11000 12000 13000 14000 15000 16000 17000 18000 19000 20000 30000 50000 70000 100000 200000 300000 400000 500000 600000 700000 800000 900000 1000000 1100000 1200000 1300000 1400000 1500000 1600000 1700000 1800000 1900000 2000000 2100000 2200000 2300000 2400000 2500000 2600000 2700000 2800000 2900000'
sync_only = true
[]
[]
(test/tests/mesh_modifiers/mesh_extruder/extrude_remap_layer2.i)
[Mesh]
[file]
type = FileMeshGenerator
file = multiblock.e
[]
[extrude]
type = MeshExtruderGenerator
input = file
num_layers = 6
extrusion_vector = '0 0 2'
bottom_sideset = 'new_bottom'
top_sideset = 'new_top'
# Remap layers
existing_subdomains = '1 2 5'
layers = '1 3 5'
new_ids = '10 12 15' # Repeat this remapping for each layer
[]
[]
[Variables]
[u]
order = FIRST
family = LAGRANGE
[]
[]
[Kernels]
[diff]
type = Diffusion
variable = u
[]
[]
[BCs]
[bottom]
type = DirichletBC
variable = u
boundary = 'new_bottom'
value = 0
[]
[top]
type = DirichletBC
variable = u
boundary = 'new_top'
value = 1
[]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
[]
[Outputs]
exodus = true
[]
(modules/contact/test/tests/mechanical-small-problem/frictionless-nodal-lm-mortar-disp.i)
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Mesh]
[./simple_mesh]
type = FileMeshGenerator
file = mesh.e
[../]
[./primary]
type = LowerDBlockFromSidesetGenerator
input = simple_mesh
sidesets = '2'
new_block_id = '3'
[../]
[./secondary]
type = LowerDBlockFromSidesetGenerator
input = primary
sidesets = '1'
new_block_id = '4'
[../]
[]
[Constraints]
[./lm]
type = NormalNodalLMMechanicalContact
secondary = 1
primary = 2
variable = frictionless_normal_lm
primary_variable = disp_x
disp_y = disp_y
[../]
[x]
type = NormalMortarMechanicalContact
primary_boundary = '2'
secondary_boundary = '1'
primary_subdomain = '3'
secondary_subdomain = '4'
variable = frictionless_normal_lm
secondary_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = false
[]
[y]
type = NormalMortarMechanicalContact
primary_boundary = '2'
secondary_boundary = '1'
primary_subdomain = '3'
secondary_subdomain = '4'
variable = frictionless_normal_lm
secondary_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = false
[]
[]
[Variables]
[./disp_x]
block = '1 2'
[../]
[./disp_y]
block = '1 2'
[../]
[./frictionless_normal_lm]
block = 4
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
boundary = 'outside_left'
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
boundary = 'outside_left'
value = 0.0
[../]
[./right_x]
type = FunctionDirichletBC
variable = disp_x
boundary = 'outside_right'
function = '-5e-3 * t'
[../]
[./right_y]
type = FunctionDirichletBC
variable = disp_y
boundary = 'outside_right'
function = 0
[../]
[]
[Kernels]
[disp_x]
type = Diffusion
variable = disp_x
block = '1 2'
[]
[disp_y]
type = Diffusion
variable = disp_y
block = '1 2'
[]
[]
[Debug]
show_var_residual_norms = 1
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Executioner]
solve_type = PJFNK
type = Transient
num_steps = 10
dt = 1
dtmin = 1
petsc_options_iname = '-pc_type -snes_linesearch_type -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu basic NONZERO 1e-15'
[]
[Outputs]
exodus = true
[]
[Postprocessors]
[contact]
type = ContactDOFSetSize
variable = frictionless_normal_lm
subdomain = '4'
execute_on = 'nonlinear timestep_end'
[]
[]
(modules/peridynamics/test/tests/simple_tests/2D_irregularD_variableH_BPD.i)
# Test for bond-based peridynamic formulation
# for irregular grid from file mesh with varying bond constants
# Square plate with Dirichlet boundary conditions applied
# at the left, top and bottom edges
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Mesh]
type = PeridynamicsMesh
horizon_number = 3
[./fmg]
type = FileMeshGenerator
file = square.e
[../]
[./gpd]
type = MeshGeneratorPD
input = fmg
retain_fe_mesh = false
[../]
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
boundary = 1001
value = 0.0
[../]
[./top_y]
type = DirichletBC
variable = disp_y
boundary = 1004
value = 0.0
[../]
[./bottom_y]
type = FunctionDirichletBC
variable = disp_y
boundary = 1002
function = '-0.001*t'
[../]
[]
[Modules/Peridynamics/Mechanics/Master]
[./all]
formulation = BOND
[../]
[]
[Materials]
[./elasticity_tensor]
type = ComputeIsotropicElasticityTensor
youngs_modulus = 2e5
poissons_ratio = 0.33
[../]
[./force_density]
type = ComputeSmallStrainVariableHorizonMaterialBPD
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
solve_type = PJFNK
line_search = none
start_time = 0
end_time = 1
[]
[Outputs]
file_base = 2D_irregularD_variableH_BPD
exodus = true
[]
(modules/porous_flow/examples/groundwater/ex02_abstraction.i)
# Abstraction groundwater model. See groundwater_models.md for a detailed description
[Mesh]
[from_steady_state]
type = FileMeshGenerator
file = gold/ex02_steady_state_ex.e
[]
[]
[GlobalParams]
PorousFlowDictator = dictator
[]
[Variables]
[pp]
[]
[]
[ICs]
[pp]
type = FunctionIC
variable = pp
function = steady_state_pp
[]
[]
[BCs]
[rainfall_recharge]
type = PorousFlowSink
boundary = zmax
variable = pp
flux_function = -1E-6 # recharge of 0.1mm/day = 1E-4m3/m2/day = 0.1kg/m2/day ~ 1E-6kg/m2/s
[]
[evapotranspiration]
type = PorousFlowHalfCubicSink
boundary = zmax
variable = pp
center = 0.0
cutoff = -5E4 # roots of depth 5m. 5m of water = 5E4 Pa
use_mobility = true
fluid_phase = 0
# Assume pan evaporation of 4mm/day = 4E-3m3/m2/day = 4kg/m2/day ~ 4E-5kg/m2/s
# Assume that if permeability was 1E-10m^2 and water table at topography then ET acts as pan strength
# Because use_mobility = true, then 4E-5 = maximum_flux = max * perm * density / visc = max * 1E-4, so max = 40
max = 40
[]
[]
[DiracKernels]
inactive = polyline_sink_borehole
[river]
type = PorousFlowPolyLineSink
SumQuantityUO = baseflow
point_file = ex02_river.bh
# Assume a perennial river.
# Assume the river has an incision depth of 1m and a stage height of 1.5m, and these are constant in time and uniform over the whole model. Hence, if groundwater head is 0.5m (5000Pa) there will be no baseflow and leakage.
p_or_t_vals = '-999995000 5000 1000005000'
# Assume the riverbed conductance, k_zz*density*river_segment_length*river_width/riverbed_thickness/viscosity = 1E-6*river_segment_length kg/Pa/s
fluxes = '-1E3 0 1E3'
variable = pp
[]
[horizontal_borehole]
type = PorousFlowPeacemanBorehole
SumQuantityUO = abstraction
bottom_p_or_t = -1E5
unit_weight = '0 0 -1E4'
character = 1.0
point_file = ex02.bh
variable = pp
[]
[polyline_sink_borehole]
type = PorousFlowPolyLineSink
SumQuantityUO = abstraction
fluxes = '-0.4 0 0.4'
p_or_t_vals = '-1E8 0 1E8'
point_file = ex02.bh
variable = pp
[]
[]
[Functions]
[steady_state_pp]
type = SolutionFunction
from_variable = pp
solution = steady_state_solution
[]
[baseflow_rate]
type = ParsedFunction
vars = 'baseflow_kg dt'
vals = 'baseflow_kg dt'
value = 'baseflow_kg / dt * 24.0 * 3600.0 / 400.0'
[]
[abstraction_rate]
type = ParsedFunction
vars = 'abstraction_kg dt'
vals = 'abstraction_kg dt'
value = 'abstraction_kg / dt * 24.0 * 3600.0'
[]
[]
[AuxVariables]
[ini_pp]
[]
[pp_change]
[]
[]
[AuxKernels]
[ini_pp]
type = FunctionAux
variable = ini_pp
function = steady_state_pp
execute_on = INITIAL
[]
[pp_change]
type = ParsedAux
variable = pp_change
args = 'pp ini_pp'
function = 'pp - ini_pp'
[]
[]
[PorousFlowUnsaturated]
fp = simple_fluid
porepressure = pp
[]
[Modules]
[FluidProperties]
[simple_fluid]
type = SimpleFluidProperties
[]
[]
[]
[Materials]
[porosity_everywhere]
type = PorousFlowPorosityConst
porosity = 0.05
[]
[permeability_aquifers]
type = PorousFlowPermeabilityConst
block = 'top_aquifer bot_aquifer'
permeability = '1E-12 0 0 0 1E-12 0 0 0 1E-13'
[]
[permeability_aquitard]
type = PorousFlowPermeabilityConst
block = aquitard
permeability = '1E-16 0 0 0 1E-16 0 0 0 1E-17'
[]
[]
[UserObjects]
[steady_state_solution]
type = SolutionUserObject
execute_on = INITIAL
mesh = gold/ex02_steady_state_ex.e
timestep = LATEST
system_variables = pp
[]
[baseflow]
type = PorousFlowSumQuantity
[]
[abstraction]
type = PorousFlowSumQuantity
[]
[]
[Postprocessors]
[baseflow_kg]
type = PorousFlowPlotQuantity
uo = baseflow
outputs = 'none'
[]
[dt]
type = TimestepSize
outputs = 'none'
[]
[baseflow_l_per_m_per_day]
type = FunctionValuePostprocessor
function = baseflow_rate
[]
[abstraction_kg]
type = PorousFlowPlotQuantity
uo = abstraction
outputs = 'none'
[]
[abstraction_kg_per_day]
type = FunctionValuePostprocessor
function = abstraction_rate
[]
[]
[Preconditioning]
[smp]
type = SMP
full = true
# following 2 lines are not mandatory, but illustrate a popular preconditioner choice in groundwater models
petsc_options_iname = '-pc_type -sub_pc_type -pc_asm_overlap'
petsc_options_value = ' asm ilu 2 '
[]
[]
[Executioner]
type = Transient
solve_type = Newton
dt = 100
[TimeStepper]
type = FunctionDT
function = 'max(100, t)'
[]
end_time = 8.64E5 # 10 days
nl_abs_tol = 1E-11
[]
[Outputs]
print_linear_residuals = false
[ex]
type = Exodus
execute_on = final
[]
[csv]
type = CSV
[]
[]
(test/tests/mortar/displaced-gap-conductance-2d-non-conforming/gap-conductance.i)
[Mesh]
displacements = 'disp_x disp_y'
[file]
type = FileMeshGenerator
file = nodal_normals_test_offset_nonmatching_gap.e
# block 1: left
# block 2: right
[]
[./primary]
input = file
type = LowerDBlockFromSidesetGenerator
sidesets = '2'
new_block_id = '20'
[../]
[./secondary]
input = primary
type = LowerDBlockFromSidesetGenerator
sidesets = '1'
new_block_id = '10'
[../]
[]
[AuxVariables]
[disp_x]
block = '1 2'
[]
[disp_y]
block = '1 2'
[]
[]
[AuxKernels]
[function_x]
type = FunctionAux
function = '.05 * t'
variable = 'disp_x'
block = '2'
[]
[function_y]
type = FunctionAux
function = '.05 * t'
variable = 'disp_y'
block = '2'
[]
[]
[Problem]
kernel_coverage_check = false
[]
[Variables]
[./T]
block = '1 2'
[../]
[./lambda]
block = '10'
family = MONOMIAL
order = CONSTANT
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = T
boundary = '5'
value = 0
[../]
[./right]
type = DirichletBC
variable = T
boundary = '8'
value = 1
[../]
[]
[Kernels]
[./conduction]
type = Diffusion
variable = T
block = '1 2'
[../]
[]
[Debug]
show_var_residual_norms = 1
[]
[Constraints]
[./mortar]
type = GapHeatConductanceTest
primary_boundary = 2
secondary_boundary = 1
primary_subdomain = 20
secondary_subdomain = 10
variable = lambda
secondary_variable = T
use_displaced_mesh = true
[../]
[]
[Materials]
[constant]
type = ADGenericConstantMaterial
prop_names = 'gap_conductance'
prop_values = '.03'
block = '1 2'
use_displaced_mesh = true
[]
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Executioner]
solve_type = NEWTON
type = Transient
num_steps = 5
petsc_options_iname = '-pc_type -snes_linesearch_type'
petsc_options_value = 'lu basic'
[]
[Outputs]
exodus = true
[dofmap]
type = DOFMap
execute_on = 'initial'
[]
[]
(test/tests/mortar/displaced-gap-conductance-2d-bnd-coupling/gap-conductance-bnd-material.i)
[Mesh]
displacements = 'disp_x disp_y'
[file]
type = FileMeshGenerator
file = nodal_normals_test_offset_nonmatching_gap.e
# block 1: left
# block 2: right
[]
[./primary]
input = file
type = LowerDBlockFromSidesetGenerator
sidesets = '2'
new_block_id = '20'
[../]
[./secondary]
input = primary
type = LowerDBlockFromSidesetGenerator
sidesets = '1'
new_block_id = '10'
[../]
[]
[AuxVariables]
[disp_x]
block = '1 2'
[]
[disp_y]
block = '1 2'
[]
[]
[AuxKernels]
[function_x]
type = FunctionAux
function = '.05 * t'
variable = 'disp_x'
block = '2'
[]
[function_y]
type = FunctionAux
function = '.05 * t'
variable = 'disp_y'
block = '2'
[]
[]
[Problem]
kernel_coverage_check = false
[]
[Variables]
[./T]
block = '1 2'
[../]
[./lambda]
block = '10'
family = LAGRANGE
order = FIRST
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = T
boundary = '5'
value = 0
[../]
[./right]
type = DirichletBC
variable = T
boundary = '8'
value = 1
[../]
[]
[Kernels]
[./conduction]
type = Diffusion
variable = T
block = '1 2'
[../]
[]
[Debug]
show_var_residual_norms = 1
[]
[Constraints]
[./mortar]
type = GapHeatConductanceMaterial
primary_boundary = 2
secondary_boundary = 1
primary_subdomain = 20
secondary_subdomain = 10
variable = lambda
secondary_variable = T
use_displaced_mesh = true
material_property = 'layer_modifier'
[../]
[]
[Materials]
[constant]
type = ADGenericConstantMaterial
prop_names = 'gap_conductance'
prop_values = '.03'
block = '1 2'
use_displaced_mesh = true
[]
[bnd_material_modifier]
type = ADGenericConstantMaterial
prop_names = 'layer_modifier'
prop_values = '5.0'
boundary = '1 2'
[../]
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Executioner]
solve_type = NEWTON
type = Transient
num_steps = 5
petsc_options_iname = '-pc_type -snes_linesearch_type'
petsc_options_value = 'lu basic'
[]
[Outputs]
exodus = true
[dofmap]
type = DOFMap
execute_on = 'initial'
[]
[]
(test/tests/meshgenerators/sidesets_from_points_generator/sidesets_from_points.i)
[Mesh]
[./fmg]
type = FileMeshGenerator
file = cylinder.e
#parallel_type = replicated
[]
[./sidesets]
type = SideSetsFromPointsGenerator
input = fmg
points = '0 0 0.5
0.1 0 0
0 0 -0.5'
new_boundary = 'top side bottom'
[]
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./bottom]
type = DirichletBC
variable = u
boundary = bottom
value = 0
[../]
[./top]
type = DirichletBC
variable = u
boundary = top
value = 1
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(test/tests/meshgenerators/gmsh_bcs/gmsh_bcs.i)
[Mesh]
[./fmg]
type = FileMeshGenerator
file = plate_hole.msh
[]
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = 12
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = 10
value = 1
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
execute_on = 'timestep_end'
exodus = true
[]
(modules/peridynamics/test/tests/mesh/2D_convert_one.i)
[Mesh]
type = PeridynamicsMesh
horizon_number = 3
[./fmg]
type = FileMeshGenerator
file = 2D_2blocks.e
[../]
[./gpd]
type = MeshGeneratorPD
input = fmg
retain_fe_mesh = false
blocks_to_pd = 1
#blocks_as_fe = 2
[../]
[]
# This input file is intended to be run with the "--mesh-only" option so
# no other sections are required
(test/tests/meshgenerators/break_mesh_by_block_generator/break_mesh_3D_polycrystal.i)
[Mesh]
[./fmg]
type = FileMeshGenerator
file = poly2.msh
#parallel_type = replicated
[]
[./breakmesh]
type = BreakMeshByBlockGenerator
input = fmg
split_interface = true
[]
[]
[Outputs]
exodus = true
[]
(modules/contact/test/tests/mechanical-small-problem/frictionless-nodal-lm-mortar-disp-action.i)
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Mesh]
[simple_mesh]
type = FileMeshGenerator
file = mesh.e
[]
[]
[Problem]
kernel_coverage_check = false
[]
[Variables]
[disp_x]
block = '1 2'
[]
[disp_y]
block = '1 2'
[]
[]
[BCs]
[left_x]
type = DirichletBC
variable = disp_x
boundary = 'outside_left'
value = 0.0
[]
[left_y]
type = DirichletBC
variable = disp_y
boundary = 'outside_left'
value = 0.0
[]
[right_x]
type = FunctionDirichletBC
variable = disp_x
boundary = 'outside_right'
function = '-5e-3 * t'
[]
[right_y]
type = FunctionDirichletBC
variable = disp_y
boundary = 'outside_right'
function = 0
[]
[]
[Kernels]
[disp_x]
type = Diffusion
variable = disp_x
block = '1 2'
[]
[disp_y]
type = Diffusion
variable = disp_y
block = '1 2'
[]
[]
[Debug]
show_var_residual_norms = 1
[]
[Contact]
[frictionless]
mesh = simple_mesh
primary = 2
secondary = 1
formulation = mortar
mortar_approach = legacy
c_normal = 1e0
[]
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
[Executioner]
solve_type = PJFNK
type = Transient
num_steps = 10
dt = 1
dtmin = 1
petsc_options_iname = '-pc_type -snes_linesearch_type -pc_factor_shift_type '
'-pc_factor_shift_amount'
petsc_options_value = 'lu basic NONZERO 1e-15'
[]
[Outputs]
exodus = true
hide = 'contact_pressure nodal_area_frictionless penetration'
[]
[Postprocessors]
[contact]
type = ContactDOFSetSize
variable = frictionless_normal_lm
subdomain = '4'
execute_on = 'nonlinear timestep_end'
[]
[]
(test/tests/mortar/continuity-2d-non-conforming/dual-soln-continuity.i)
[Mesh]
second_order = false
[file]
type = FileMeshGenerator
file = nodal_normals_test_offset_nonmatching_gap.e
[]
[./primary]
input = file
type = LowerDBlockFromSidesetGenerator
sidesets = '2'
new_block_id = '20'
[../]
[./secondary]
input = primary
type = LowerDBlockFromSidesetGenerator
sidesets = '1'
new_block_id = '10'
[../]
[]
[Problem]
kernel_coverage_check = false
[]
[Variables]
[./T]
block = '1 2'
order = FIRST
[../]
[./lambda]
block = '10'
order = FIRST
use_dual = true
[../]
[]
[BCs]
[./neumann]
type = FunctionGradientNeumannBC
exact_solution = exact_soln
variable = T
boundary = '3 4 5 6 7 8'
[../]
[]
[Kernels]
[./conduction]
type = Diffusion
variable = T
block = '1 2'
[../]
[./sink]
type = Reaction
variable = T
block = '1 2'
[../]
[./forcing_function]
type = BodyForce
variable = T
function = forcing_function
block = '1 2'
[../]
[]
[Functions]
[./forcing_function]
type = ParsedFunction
value = '-4 + x^2 + y^2'
[../]
[./exact_soln]
type = ParsedFunction
value = 'x^2 + y^2'
[../]
[]
[Debug]
show_var_residual_norms = 1
[]
[Constraints]
[./mortar]
type = EqualValueConstraint
primary_boundary = 2
secondary_boundary = 1
primary_subdomain = 20
secondary_subdomain = 10
variable = lambda
secondary_variable = T
[../]
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Executioner]
solve_type = NEWTON
type = Steady
petsc_options_iname = '-pc_type -snes_linesearch_type -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu basic NONZERO 1e-15'
[]
[Outputs]
exodus = true
[dofmap]
type = DOFMap
execute_on = 'initial'
[]
[]
(modules/contact/test/tests/sliding_block/in_and_out/frictionless_lm.i)
[Mesh]
patch_size = 80
[file]
type = FileMeshGenerator
file = sliding_elastic_blocks_2d.e
[]
[secondary]
input = file
type = LowerDBlockFromSidesetGenerator
sidesets = '3'
new_block_id = '30'
[]
[primary]
input = secondary
type = LowerDBlockFromSidesetGenerator
sidesets = '2'
new_block_id = '20'
[]
[]
[GlobalParams]
displacements = 'disp_x disp_y'
volumetric_locking_correction = false
[]
[Modules/TensorMechanics/Master]
[./all]
add_variables = true
strain = FINITE
block = '1 2'
[../]
[]
[Variables]
[normal_lm]
block = '30'
[]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
boundary = 1
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
boundary = 1
value = 0.0
[../]
[./right_x]
type = FunctionDirichletBC
variable = disp_x
boundary = 4
function = horizontal_movement
[../]
[./right_y]
type = FunctionDirichletBC
variable = disp_y
boundary = 4
function = vertical_movement
[../]
[]
[Materials]
[./left]
type = ComputeIsotropicElasticityTensor
block = '1 2'
youngs_modulus = 1e6
poissons_ratio = 0.3
constant_on = SUBDOMAIN
[../]
[./stress]
type = ComputeFiniteStrainElasticStress
block = '1 2'
[../]
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason -snes_ksp_ew'
petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu 1e-5 NONZERO 1e-15'
end_time = 15
dt = 0.1
dtmin = 0.01
l_max_its = 30
nl_max_its = 20
line_search = 'none'
timestep_tolerance = 1e-6
snesmf_reuse_base = false
[]
[Debug]
show_var_residual_norms = true
[]
[Outputs]
sync_times = '1 2 3 4 5 6 7 8 9 10 11 12 13 14 15'
[out]
type = Exodus
sync_only = true
[]
[dof]
execute_on = 'initial'
type = DOFMap
[]
[csv]
type = CSV
execute_on = 'nonlinear timestep_end'
[]
[]
[Functions]
[./vertical_movement]
type = ParsedFunction
value = -t
[../]
[./horizontal_movement]
type = ParsedFunction
value = -0.04*sin(4*t)+0.02
[../]
[]
[Constraints]
[./lm]
type = NormalNodalLMMechanicalContact
secondary = 3
primary = 2
variable = normal_lm
primary_variable = disp_x
disp_y = disp_y
ncp_function_type = min
use_displaced_mesh = true
[../]
[normal_x]
type = NormalMortarMechanicalContact
primary_boundary = '2'
secondary_boundary = '3'
primary_subdomain = '20'
secondary_subdomain = '30'
variable = normal_lm
secondary_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = false
[]
[normal_y]
type = NormalMortarMechanicalContact
primary_boundary = '2'
secondary_boundary = '3'
primary_subdomain = '20'
secondary_subdomain = '30'
variable = normal_lm
secondary_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = false
[]
[]
[Postprocessors]
[./num_nl]
type = NumNonlinearIterations
[../]
[lin]
type = NumLinearIterations
[]
[contact]
type = ContactDOFSetSize
variable = normal_lm
subdomain = '30'
execute_on = 'nonlinear timestep_end'
[]
[]
(test/tests/meshgenerators/patterned_mesh_generator/patterned_mesh_generator.i)
[Mesh]
[./fmg]
type = FileMeshGenerator
file = quad_mesh.e
[]
[./fmg2]
type = FileMeshGenerator
file = tri_mesh.e
[]
[./pmg]
type = PatternedMeshGenerator
inputs = 'fmg fmg2'
pattern = '0 0 0 0 0 0 0 0 0 0 0 0 0 0 ;
0 1 1 0 0 0 0 0 0 0 0 1 1 0 ;
0 1 1 1 0 0 0 0 0 0 1 1 1 0 ;
0 1 0 1 1 0 0 0 0 1 1 0 1 0 ;
0 1 0 0 1 1 0 0 1 1 0 0 1 0 ;
0 1 0 0 0 1 1 1 1 0 0 0 1 0 ;
0 1 0 0 0 0 1 1 0 0 0 0 1 0 ;
0 1 0 0 0 0 0 0 0 0 0 0 1 0 ;
0 1 0 0 0 0 0 0 0 0 0 0 1 0 ;
0 1 0 0 0 0 0 0 0 0 0 0 1 0 ;
0 1 0 0 0 0 0 0 0 0 0 0 1 0 ;
0 0 0 0 0 0 0 0 0 0 0 0 0 0'
bottom_boundary = 1
right_boundary = 2
top_boundary = 3
left_boundary = 4
[]
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = MatCoefDiffusion
variable = u
conductivity = conductivity
[../]
[]
[BCs]
[./top]
type = DirichletBC
variable = u
boundary = 3
value = 1
[../]
[./bottom]
type = DirichletBC
variable = u
boundary = 1
value = 0
[../]
[]
[Materials]
[./mat1]
type = GenericConstantMaterial
block = 1
prop_names = conductivity
prop_values = 100
[../]
[./mat2]
type = GenericConstantMaterial
block = 2
prop_names = conductivity
prop_values = 1e-4
[../]
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(test/tests/meshgenerators/break_mesh_by_block_generator/break_mesh_3D_auto.i)
[Mesh]
[./fmg]
type = FileMeshGenerator
file = coh3D_3Blocks.e
parallel_type = replicated
[]
[./breakmesh]
type = BreakMeshByBlockGenerator
input = fmg
split_interface = true
[]
[]
[Outputs]
exodus = true
[]
(test/tests/mortar/continuity-2d-non-conforming/soln-continuity.i)
[Mesh]
second_order = true
[file]
type = FileMeshGenerator
file = nodal_normals_test_offset_nonmatching_gap.e
[]
[./primary]
input = file
type = LowerDBlockFromSidesetGenerator
sidesets = '2'
new_block_id = '20'
[../]
[./secondary]
input = primary
type = LowerDBlockFromSidesetGenerator
sidesets = '1'
new_block_id = '10'
[../]
[]
[Problem]
kernel_coverage_check = false
[]
[Variables]
[./T]
block = '1 2'
order = SECOND
[../]
[./lambda]
block = '10'
[../]
[]
[BCs]
[./neumann]
type = FunctionGradientNeumannBC
exact_solution = exact_soln
variable = T
boundary = '3 4 5 6 7 8'
[../]
[]
[Kernels]
[./conduction]
type = Diffusion
variable = T
block = '1 2'
[../]
[./sink]
type = Reaction
variable = T
block = '1 2'
[../]
[./forcing_function]
type = BodyForce
variable = T
function = forcing_function
block = '1 2'
[../]
[]
[Functions]
[./forcing_function]
type = ParsedFunction
value = '-4 + x^2 + y^2'
[../]
[./exact_soln]
type = ParsedFunction
value = 'x^2 + y^2'
[../]
[]
[Debug]
show_var_residual_norms = 1
[]
[Constraints]
[./mortar]
type = EqualValueConstraint
primary_boundary = 2
secondary_boundary = 1
primary_subdomain = 20
secondary_subdomain = 10
variable = lambda
secondary_variable = T
[../]
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Executioner]
solve_type = NEWTON
type = Steady
petsc_options_iname = '-pc_type -snes_linesearch_type -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu basic NONZERO 1e-15'
[]
[Outputs]
exodus = true
[dofmap]
type = DOFMap
execute_on = 'initial'
[]
[]
(modules/combined/test/tests/gap_heat_transfer_jac/two_blocks.i)
# This problem consists of two beams with different prescribed temperatures on
# the top of the top beam and the bottom of the bottom beam. The top beam is
# fixed against vertical displacement on the top surface, and the bottom beam
# bends downward due to thermal expansion.
# This is a test of the effectiveness of the Jacobian terms coupling temperature
# and displacement for thermal contact. The Jacobian is not exactly correct,
# but is close enough that this challenging problem converges in a small number
# of nonlinear iterations using NEWTON.
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Mesh]
[./msh]
type = FileMeshGenerator
file = two_blocks.e
[]
[]
[Variables]
[./temp]
[../]
[]
[Kernels]
[./heat]
type = ADHeatConduction
variable = temp
[../]
[]
[Modules/TensorMechanics/Master]
[./all]
strain = FINITE
add_variables = true
eigenstrain_names = thermal_expansion
generate_output = 'stress_xx stress_yy stress_zz stress_yz stress_xz stress_xy'
use_automatic_differentiation = true
[../]
[]
[Contact]
[./mechanical]
primary = 4
secondary = 5
formulation = kinematic
tangential_tolerance = 1e-1
penalty = 1e10
[../]
[]
[ThermalContact]
[./thermal]
type = GapHeatTransfer
variable = temp
primary = 4
secondary = 5
emissivity_primary = 0
emissivity_secondary = 0
gap_conductivity = 1e4
quadrature = true
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
boundary = 1
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
boundary = 1
value = 0.0
[../]
[./top_y]
type = DirichletBC
variable = disp_y
boundary = 7
value = 0
[../]
[./top_temp]
type = DirichletBC
variable = temp
boundary = 7
value = 1000.0
[../]
[./bot_temp]
type = DirichletBC
variable = temp
boundary = 6
value = 500.0
[../]
[]
[Materials]
[./density]
type = Density
density = 100
[../]
[./temp]
type = ADHeatConductionMaterial
thermal_conductivity = 1e5
specific_heat = 620.0
[../]
[./Elasticity_tensor]
type = ADComputeElasticityTensor
fill_method = symmetric_isotropic
C_ijkl = '0.3 0.5e8'
[../]
[./thermal_eigenstrain]
type = ADComputeThermalExpansionEigenstrain
thermal_expansion_coeff = 1e-5
stress_free_temperature = 500
temperature = temp
eigenstrain_name = thermal_expansion
[../]
[./stress]
type = ADComputeFiniteStrainElasticStress
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Outputs]
exodus = true
[]
[Executioner]
automatic_scaling = true
type = Transient
petsc_options_iname = '-pc_type'
petsc_options_value = 'lu'
solve_type = NEWTON
nl_max_its = 15
l_tol = 1e-10
l_max_its = 50
start_time = 0.0
dt = 0.2
dtmin = 0.2
num_steps = 1
line_search = none
[]
(modules/peridynamics/test/tests/auxkernels/boundary_offset_node_area_2D.i)
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Mesh]
type = PeridynamicsMesh
horizon_number = 3
[./fmg]
type = FileMeshGenerator
file = 2D_square.e
[../]
[./mgpd]
type = MeshGeneratorPD
input = fmg
retain_fe_mesh = false
[../]
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[]
[AuxVariables]
[./gap_offset]
[../]
[./node_area]
[../]
[]
[AuxKernels]
[./gap_offset]
type = BoundaryOffsetPD
variable = gap_offset
[../]
[./node_area]
type = NodalVolumePD
variable = node_area
[../]
[]
[Modules/Peridynamics/Mechanics/Master]
[./blk1]
formulation = BOND
[../]
[]
[Materials]
[./elasticity_tensor]
type = ComputeIsotropicElasticityTensor
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./material_pd]
type = ComputeSmallStrainVariableHorizonMaterialBPD
[../]
[]
[BCs]
[./fix_x]
type = DirichletBC
variable = disp_x
boundary = 1001
value = 0
[../]
[./fix_y]
type = DirichletBC
variable = disp_y
boundary = 1001
value = 0
[../]
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
end_time = 1
[]
[Outputs]
exodus = true
[]
(test/tests/mortar/periodic-value/periodic.i)
[Mesh]
[file]
type = FileMeshGenerator
file = square.msh
[]
[secondary]
input = file
type = LowerDBlockFromSidesetGenerator
new_block_id = 11
new_block_name = "secondary"
sidesets = '101'
[]
[primary]
input = secondary
type = LowerDBlockFromSidesetGenerator
new_block_id = 12
new_block_name = "primary"
sidesets = '103'
[]
[]
[Variables]
[u]
order = SECOND
block = 'domain'
[]
[lm]
block = 'secondary'
[]
[]
[Kernels]
[diffusion]
type = Diffusion
variable = u
block = 'domain'
[]
[force]
type = BodyForce
variable = u
block = 'domain'
[]
[]
[BCs]
[left]
type = DirichletBC
variable = u
value = 1
boundary = 'left'
[]
[]
[Constraints]
[ev]
type = EqualValueConstraint
variable = lm
secondary_variable = u
primary_boundary = 103
secondary_boundary = 101
primary_subdomain = 12
secondary_subdomain = 11
periodic = true
[]
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
[Executioner]
type = Steady
solve_type = NEWTON
[]
[Outputs]
exodus = true
[]
(modules/tensor_mechanics/test/tests/cohesive_zone_model/czm_patch_test_base.i)
# Patch test for cohesive zone modeling to check the jacobian of cohesive kernels and materials.
# One test of this kind should be included when adding a new traction separation law.
# To preperly check the cohesive zone Jacobian, the cohesive stiffness should be low compared to the bulk stiffness.
# Quadratic convergence is always expected.
[Mesh]
[./msh]
type = FileMeshGenerator
file = patch_mesh.e
[]
[./split]
type = BreakMeshByBlockGenerator
input = msh
[]
[./add_surfaces]
type = SideSetsFromNormalsGenerator
input = split
normals = '0 0 1
0 1 0
1 0 0
0 0 -1
0 -1 0
-1 0 0'
fixed_normal = true
new_boundary = 'z1 y1 x1 z0 y0 x0'
[]
[]
[GlobalParams]
displacements = 'disp_x disp_y disp_z'
[]
[Modules]
[./TensorMechanics]
[./Master]
[./all]
strain = FINITE
add_variables = true
use_finite_deform_jacobian = true
use_automatic_differentiation = true
[../]
[../]
[../]
[]
[Functions]
[./stretch]
type = PiecewiseLinear
x = '0 0.05'
y = '0 0.1'
[../]
[]
[Constraints]
[x1]
type = EqualValueBoundaryConstraint
variable = disp_x
secondary = 'x1' # boundary
penalty = 1e6
[]
[y1]
type = EqualValueBoundaryConstraint
variable = disp_y
secondary = 'y1' # boundary
penalty = 1e6
[]
[]
[BCs]
[./fix_x]
type = DirichletBC
preset = true
value = 0.0
boundary = 'x0'
variable = disp_x
[../]
[./fix_y]
type = DirichletBC
preset = true
value = 0.0
boundary = 'y0'
variable = disp_y
[../]
[./fix_z]
type = DirichletBC
preset = true
value = 0.0
boundary = 'z0'
variable = disp_z
[../]
[./back_z]
type = FunctionDirichletBC
boundary = 'z1'
variable = disp_z
use_displaced_mesh = true
function = stretch
[../]
[./rotate_x]
type = DisplacementAboutAxis
boundary = 'x0 y0 z0 x1 y1 z1'
function = '90.'
angle_units = degrees
axis_origin = '0. 0. 0.'
axis_direction = '0. 1. 0.'
component = 0
variable = disp_x
angular_velocity = true
[../]
[./rotate_y]
type = DisplacementAboutAxis
boundary = 'x0 y0 z0 x1 y1 z1'
function = '90.'
angle_units = degrees
axis_origin = '0. 0. 0.'
axis_direction = '0. 1. 0.'
component = 1
variable = disp_y
angular_velocity = true
[../]
[./rotate_z]
type = DisplacementAboutAxis
boundary = 'x0 y0 z0 x1 y1 z1'
function = '90.'
angle_units = degrees
axis_origin = '0. 0. 0.'
axis_direction = '0. 1. 0.'
component = 2
variable = disp_z
angular_velocity = true
[../]
[]
[Controls]
[./c1]
type = TimePeriod
enable_objects = 'BCs::fix_x BCs::fix_y BCs::fix_z BCs::back_z Constraints::x1 Constraints::y1'
disable_objects = 'BCs::rotate_x BCs::rotate_y BCs::rotate_z'
start_time = '0'
end_time = '0.05'
[../]
[]
[Modules/TensorMechanics/CohesiveZoneMaster]
[./czm_ik]
boundary = 'interface'
[../]
[]
[Materials]
[./stress]
type = ADComputeFiniteStrainElasticStress
[../]
[./elasticity_tensor]
type = ADComputeElasticityTensor
fill_method = symmetric9
C_ijkl = '1.684e5 0.176e5 0.176e5 1.684e5 0.176e5 1.684e5 0.754e5 0.754e5 0.754e5'
[../]
[./czm_mat]
boundary = 'interface'
[../]
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
solve_type = 'newton'
line_search = none
petsc_options_iname = '-pc_type'
petsc_options_value = 'lu'
l_max_its = 2
l_tol = 1e-14
nl_max_its = 15
nl_rel_tol = 1e-10
nl_abs_tol = 1e-10
start_time = 0.0
dt = 0.025
end_time = 0.075
[]
[Postprocessors]
[./nonlin]
type = NumNonlinearIterations
[../]
[]
[Outputs]
csv = true
exodus = true
[]
(modules/peridynamics/test/tests/mesh/3D_sideset.i)
[Mesh]
type = PeridynamicsMesh
horizon_number = 3
[./fmg]
type = FileMeshGenerator
file = sphere.e
[../]
[./mgpd]
type = MeshGeneratorPD
input = fmg
retain_fe_mesh = false
construct_pd_sidesets = true
[../]
[]
(modules/porous_flow/examples/coal_mining/coarse_with_fluid.i)
# Strata deformation and fluid flow aaround a coal mine - 3D model
#
# A "half model" is used. The mine is 400m deep and
# just the roof is studied (-400<=z<=0). The mining panel
# sits between 0<=x<=150, and 0<=y<=1000, so this simulates
# a coal panel that is 300m wide and 1000m long. The outer boundaries
# are 1km from the excavation boundaries.
#
# The excavation takes 0.5 years.
#
# The boundary conditions for this simulation are:
# - disp_x = 0 at x=0 and x=1150
# - disp_y = 0 at y=-1000 and y=1000
# - disp_z = 0 at z=-400, but there is a time-dependent
# Young modulus that simulates excavation
# - wc_x = 0 at y=-1000 and y=1000
# - wc_y = 0 at x=0 and x=1150
# - no flow at x=0, z=-400 and z=0
# - fixed porepressure at y=-1000, y=1000 and x=1150
# That is, rollers on the sides, free at top,
# and prescribed at bottom in the unexcavated portion.
#
# A single-phase unsaturated fluid is used.
#
# The small strain formulation is used.
#
# All stresses are measured in MPa, and time units are measured in years.
#
# The initial porepressure is hydrostatic with P=0 at z=0, so
# Porepressure ~ - 0.01*z MPa, where the fluid has density 1E3 kg/m^3 and
# gravity = = 10 m.s^-2 = 1E-5 MPa m^2/kg.
# To be more accurate, i use
# Porepressure = -bulk * log(1 + g*rho0*z/bulk)
# where bulk=2E3 MPa and rho0=1Ee kg/m^3.
# The initial stress is consistent with the weight force from undrained
# density 2500 kg/m^3, and fluid porepressure, and a Biot coefficient of 0.7, ie,
# stress_zz^effective = 0.025*z + 0.7 * initial_porepressure
# The maximum and minimum principal horizontal effective stresses are
# assumed to be equal to 0.8*stress_zz.
#
# Material properties:
# Young's modulus = 8 GPa
# Poisson's ratio = 0.25
# Cosserat layer thickness = 1 m
# Cosserat-joint normal stiffness = large
# Cosserat-joint shear stiffness = 1 GPa
# MC cohesion = 2 MPa
# MC friction angle = 35 deg
# MC dilation angle = 8 deg
# MC tensile strength = 1 MPa
# MC compressive strength = 100 MPa
# WeakPlane cohesion = 0.1 MPa
# WeakPlane friction angle = 30 deg
# WeakPlane dilation angle = 10 deg
# WeakPlane tensile strength = 0.1 MPa
# WeakPlane compressive strength = 100 MPa softening to 1 MPa at strain = 1
# Fluid density at zero porepressure = 1E3 kg/m^3
# Fluid bulk modulus = 2E3 MPa
# Fluid viscosity = 1.1E-3 Pa.s = 1.1E-9 MPa.s = 3.5E-17 MPa.year
#
[GlobalParams]
perform_finite_strain_rotations = false
displacements = 'disp_x disp_y disp_z'
Cosserat_rotations = 'wc_x wc_y wc_z'
PorousFlowDictator = dictator
biot_coefficient = 0.7
[]
[Mesh]
[file]
type = FileMeshGenerator
file = mesh/coarse.e
[]
[xmin]
type = SideSetsAroundSubdomainGenerator
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
new_boundary = xmin
normal = '-1 0 0'
input = file
[]
[xmax]
type = SideSetsAroundSubdomainGenerator
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
new_boundary = xmax
normal = '1 0 0'
input = xmin
[]
[ymin]
type = SideSetsAroundSubdomainGenerator
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
new_boundary = ymin
normal = '0 -1 0'
input = xmax
[]
[ymax]
type = SideSetsAroundSubdomainGenerator
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
new_boundary = ymax
normal = '0 1 0'
input = ymin
[]
[zmax]
type = SideSetsAroundSubdomainGenerator
block = 16
new_boundary = zmax
normal = '0 0 1'
input = ymax
[]
[zmin]
type = SideSetsAroundSubdomainGenerator
block = 2
new_boundary = zmin
normal = '0 0 -1'
input = zmax
[]
[excav]
type = SubdomainBoundingBoxGenerator
input = zmin
block_id = 1
bottom_left = '0 0 -400'
top_right = '150 1000 -397'
[]
[roof]
type = SideSetsBetweenSubdomainsGenerator
primary_block = 3
paired_block = 1
input = excav
new_boundary = roof
[]
[]
[Variables]
[disp_x]
[]
[disp_y]
[]
[disp_z]
[]
[wc_x]
[]
[wc_y]
[]
[porepressure]
scaling = 1E-5
[]
[]
[ICs]
[porepressure]
type = FunctionIC
variable = porepressure
function = ini_pp
[]
[]
[Kernels]
[cx_elastic]
type = CosseratStressDivergenceTensors
use_displaced_mesh = false
variable = disp_x
component = 0
[]
[cy_elastic]
type = CosseratStressDivergenceTensors
use_displaced_mesh = false
variable = disp_y
component = 1
[]
[cz_elastic]
type = CosseratStressDivergenceTensors
use_displaced_mesh = false
variable = disp_z
component = 2
[]
[x_couple]
type = StressDivergenceTensors
use_displaced_mesh = false
variable = wc_x
displacements = 'wc_x wc_y wc_z'
component = 0
base_name = couple
[]
[y_couple]
type = StressDivergenceTensors
use_displaced_mesh = false
variable = wc_y
displacements = 'wc_x wc_y wc_z'
component = 1
base_name = couple
[]
[x_moment]
type = MomentBalancing
use_displaced_mesh = false
variable = wc_x
component = 0
[]
[y_moment]
type = MomentBalancing
use_displaced_mesh = false
variable = wc_y
component = 1
[]
[gravity]
type = Gravity
use_displaced_mesh = false
variable = disp_z
value = -10E-6 # remember this is in MPa
[]
[poro_x]
type = PorousFlowEffectiveStressCoupling
use_displaced_mesh = false
variable = disp_x
component = 0
[]
[poro_y]
type = PorousFlowEffectiveStressCoupling
use_displaced_mesh = false
variable = disp_y
component = 1
[]
[poro_z]
type = PorousFlowEffectiveStressCoupling
use_displaced_mesh = false
component = 2
variable = disp_z
[]
[mass0]
type = PorousFlowMassTimeDerivative
fluid_component = 0
variable = porepressure
[]
[flux]
type = PorousFlowAdvectiveFlux
use_displaced_mesh = false
variable = porepressure
gravity = '0 0 -10E-6'
fluid_component = 0
[]
[poro_vol_exp]
type = PorousFlowMassVolumetricExpansion
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
variable = porepressure
fluid_component = 0
[]
[]
[AuxVariables]
[saturation]
order = CONSTANT
family = MONOMIAL
[]
[darcy_x]
order = CONSTANT
family = MONOMIAL
[]
[darcy_y]
order = CONSTANT
family = MONOMIAL
[]
[darcy_z]
order = CONSTANT
family = MONOMIAL
[]
[porosity]
order = CONSTANT
family = MONOMIAL
[]
[wc_z]
[]
[stress_xx]
order = CONSTANT
family = MONOMIAL
[]
[stress_xy]
order = CONSTANT
family = MONOMIAL
[]
[stress_xz]
order = CONSTANT
family = MONOMIAL
[]
[stress_yx]
order = CONSTANT
family = MONOMIAL
[]
[stress_yy]
order = CONSTANT
family = MONOMIAL
[]
[stress_yz]
order = CONSTANT
family = MONOMIAL
[]
[stress_zx]
order = CONSTANT
family = MONOMIAL
[]
[stress_zy]
order = CONSTANT
family = MONOMIAL
[]
[stress_zz]
order = CONSTANT
family = MONOMIAL
[]
[total_strain_xx]
order = CONSTANT
family = MONOMIAL
[]
[total_strain_xy]
order = CONSTANT
family = MONOMIAL
[]
[total_strain_xz]
order = CONSTANT
family = MONOMIAL
[]
[total_strain_yx]
order = CONSTANT
family = MONOMIAL
[]
[total_strain_yy]
order = CONSTANT
family = MONOMIAL
[]
[total_strain_yz]
order = CONSTANT
family = MONOMIAL
[]
[total_strain_zx]
order = CONSTANT
family = MONOMIAL
[]
[total_strain_zy]
order = CONSTANT
family = MONOMIAL
[]
[total_strain_zz]
order = CONSTANT
family = MONOMIAL
[]
[perm_xx]
order = CONSTANT
family = MONOMIAL
[]
[perm_yy]
order = CONSTANT
family = MONOMIAL
[]
[perm_zz]
order = CONSTANT
family = MONOMIAL
[]
[mc_shear]
order = CONSTANT
family = MONOMIAL
[]
[mc_tensile]
order = CONSTANT
family = MONOMIAL
[]
[wp_shear]
order = CONSTANT
family = MONOMIAL
[]
[wp_tensile]
order = CONSTANT
family = MONOMIAL
[]
[wp_shear_f]
order = CONSTANT
family = MONOMIAL
[]
[wp_tensile_f]
order = CONSTANT
family = MONOMIAL
[]
[mc_shear_f]
order = CONSTANT
family = MONOMIAL
[]
[mc_tensile_f]
order = CONSTANT
family = MONOMIAL
[]
[]
[AuxKernels]
[saturation_water]
type = PorousFlowPropertyAux
variable = saturation
property = saturation
phase = 0
execute_on = timestep_end
[]
[darcy_x]
type = PorousFlowDarcyVelocityComponent
variable = darcy_x
gravity = '0 0 -10E-6'
component = x
[]
[darcy_y]
type = PorousFlowDarcyVelocityComponent
variable = darcy_y
gravity = '0 0 -10E-6'
component = y
[]
[darcy_z]
type = PorousFlowDarcyVelocityComponent
variable = darcy_z
gravity = '0 0 -10E-6'
component = z
[]
[porosity]
type = PorousFlowPropertyAux
property = porosity
variable = porosity
execute_on = timestep_end
[]
[stress_xx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xx
index_i = 0
index_j = 0
execute_on = timestep_end
[]
[stress_xy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xy
index_i = 0
index_j = 1
execute_on = timestep_end
[]
[stress_xz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xz
index_i = 0
index_j = 2
execute_on = timestep_end
[]
[stress_yx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yx
index_i = 1
index_j = 0
execute_on = timestep_end
[]
[stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
execute_on = timestep_end
[]
[stress_yz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yz
index_i = 1
index_j = 2
execute_on = timestep_end
[]
[stress_zx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zx
index_i = 2
index_j = 0
execute_on = timestep_end
[]
[stress_zy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zy
index_i = 2
index_j = 1
execute_on = timestep_end
[]
[stress_zz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zz
index_i = 2
index_j = 2
execute_on = timestep_end
[]
[total_strain_xx]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_xx
index_i = 0
index_j = 0
execute_on = timestep_end
[]
[total_strain_xy]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_xy
index_i = 0
index_j = 1
execute_on = timestep_end
[]
[total_strain_xz]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_xz
index_i = 0
index_j = 2
execute_on = timestep_end
[]
[total_strain_yx]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_yx
index_i = 1
index_j = 0
execute_on = timestep_end
[]
[total_strain_yy]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_yy
index_i = 1
index_j = 1
execute_on = timestep_end
[]
[total_strain_yz]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_yz
index_i = 1
index_j = 2
execute_on = timestep_end
[]
[total_strain_zx]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_zx
index_i = 2
index_j = 0
execute_on = timestep_end
[]
[total_strain_zy]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_zy
index_i = 2
index_j = 1
execute_on = timestep_end
[]
[total_strain_zz]
type = RankTwoAux
rank_two_tensor = total_strain
variable = total_strain_zz
index_i = 2
index_j = 2
execute_on = timestep_end
[]
[perm_xx]
type = PorousFlowPropertyAux
property = permeability
variable = perm_xx
row = 0
column = 0
execute_on = timestep_end
[]
[perm_yy]
type = PorousFlowPropertyAux
property = permeability
variable = perm_yy
row = 1
column = 1
execute_on = timestep_end
[]
[perm_zz]
type = PorousFlowPropertyAux
property = permeability
variable = perm_zz
row = 2
column = 2
execute_on = timestep_end
[]
[mc_shear]
type = MaterialStdVectorAux
index = 0
property = mc_plastic_internal_parameter
variable = mc_shear
execute_on = timestep_end
[]
[mc_tensile]
type = MaterialStdVectorAux
index = 1
property = mc_plastic_internal_parameter
variable = mc_tensile
execute_on = timestep_end
[]
[wp_shear]
type = MaterialStdVectorAux
index = 0
property = wp_plastic_internal_parameter
variable = wp_shear
execute_on = timestep_end
[]
[wp_tensile]
type = MaterialStdVectorAux
index = 1
property = wp_plastic_internal_parameter
variable = wp_tensile
execute_on = timestep_end
[]
[mc_shear_f]
type = MaterialStdVectorAux
index = 6
property = mc_plastic_yield_function
variable = mc_shear_f
execute_on = timestep_end
[]
[mc_tensile_f]
type = MaterialStdVectorAux
index = 0
property = mc_plastic_yield_function
variable = mc_tensile_f
execute_on = timestep_end
[]
[wp_shear_f]
type = MaterialStdVectorAux
index = 0
property = wp_plastic_yield_function
variable = wp_shear_f
execute_on = timestep_end
[]
[wp_tensile_f]
type = MaterialStdVectorAux
index = 1
property = wp_plastic_yield_function
variable = wp_tensile_f
execute_on = timestep_end
[]
[]
[BCs]
[no_x]
type = DirichletBC
variable = disp_x
boundary = 'xmin xmax'
value = 0.0
[]
[no_y]
type = DirichletBC
variable = disp_y
boundary = 'ymin ymax'
value = 0.0
[]
[no_z]
type = DirichletBC
variable = disp_z
boundary = zmin
value = 0.0
[]
[no_wc_x]
type = DirichletBC
variable = wc_x
boundary = 'ymin ymax'
value = 0.0
[]
[no_wc_y]
type = DirichletBC
variable = wc_y
boundary = 'xmin xmax'
value = 0.0
[]
[fix_porepressure]
type = FunctionDirichletBC
variable = porepressure
boundary = 'ymin ymax xmax'
function = ini_pp
[]
[roof_porepressure]
type = PorousFlowPiecewiseLinearSink
variable = porepressure
pt_vals = '-1E3 1E3'
multipliers = '-1 1'
fluid_phase = 0
flux_function = roof_conductance
boundary = roof
[]
[roof_bcs]
type = StickyBC
variable = disp_z
min_value = -3.0
boundary = roof
[]
[]
[Functions]
[ini_pp]
type = ParsedFunction
vars = 'bulk p0 g rho0'
vals = '2E3 0.0 1E-5 1E3'
value = '-bulk*log(exp(-p0/bulk)+g*rho0*z/bulk)'
[]
[ini_xx]
type = ParsedFunction
vars = 'bulk p0 g rho0 biot'
vals = '2E3 0.0 1E-5 1E3 0.7'
value = '0.8*(2500*10E-6*z+biot*(-bulk*log(exp(-p0/bulk)+g*rho0*z/bulk)))'
[]
[ini_zz]
type = ParsedFunction
vars = 'bulk p0 g rho0 biot'
vals = '2E3 0.0 1E-5 1E3 0.7'
value = '2500*10E-6*z+biot*(-bulk*log(exp(-p0/bulk)+g*rho0*z/bulk))'
[]
[excav_sideways]
type = ParsedFunction
vars = 'end_t ymin ymax minval maxval slope'
vals = '0.5 0 1000.0 1E-9 1 60'
# excavation face at ymin+(ymax-ymin)*min(t/end_t,1)
# slope is the distance over which the modulus reduces from maxval to minval
value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),minval,if(y<ymin+(ymax-ymin)*min(t/end_t,1)+slope,minval+(maxval-minval)*(y-(ymin+(ymax-ymin)*min(t/end_t,1)))/slope,maxval))'
[]
[density_sideways]
type = ParsedFunction
vars = 'end_t ymin ymax minval maxval'
vals = '0.5 0 1000.0 0 2500'
value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),minval,maxval)'
[]
[roof_conductance]
type = ParsedFunction
vars = 'end_t ymin ymax maxval minval'
vals = '0.5 0 1000.0 1E7 0'
value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),maxval,minval)'
[]
[]
[UserObjects]
[dictator]
type = PorousFlowDictator
porous_flow_vars = 'porepressure disp_x disp_y disp_z'
number_fluid_phases = 1
number_fluid_components = 1
[]
[pc]
type = PorousFlowCapillaryPressureVG
m = 0.5
alpha = 1 # MPa^-1
[]
[mc_coh_strong_harden]
type = TensorMechanicsHardeningExponential
value_0 = 1.99 # MPa
value_residual = 2.01 # MPa
rate = 1.0
[]
[mc_fric]
type = TensorMechanicsHardeningConstant
value = 0.61 # 35deg
[]
[mc_dil]
type = TensorMechanicsHardeningConstant
value = 0.15 # 8deg
[]
[mc_tensile_str_strong_harden]
type = TensorMechanicsHardeningExponential
value_0 = 1.0 # MPa
value_residual = 1.0 # MPa
rate = 1.0
[]
[mc_compressive_str]
type = TensorMechanicsHardeningCubic
value_0 = 100 # Large!
value_residual = 100
internal_limit = 0.1
[]
[wp_coh_harden]
type = TensorMechanicsHardeningCubic
value_0 = 0.05
value_residual = 0.05
internal_limit = 10
[]
[wp_tan_fric]
type = TensorMechanicsHardeningConstant
value = 0.26 # 15deg
[]
[wp_tan_dil]
type = TensorMechanicsHardeningConstant
value = 0.18 # 10deg
[]
[wp_tensile_str_harden]
type = TensorMechanicsHardeningCubic
value_0 = 0.05
value_residual = 0.05
internal_limit = 10
[]
[wp_compressive_str_soften]
type = TensorMechanicsHardeningCubic
value_0 = 100
value_residual = 1
internal_limit = 1.0
[]
[]
[Modules]
[FluidProperties]
[simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 2E3
density0 = 1000
thermal_expansion = 0
viscosity = 3.5E-17
[]
[]
[]
[Materials]
[temperature]
type = PorousFlowTemperature
[]
[eff_fluid_pressure]
type = PorousFlowEffectiveFluidPressure
[]
[vol_strain]
type = PorousFlowVolumetricStrain
[]
[ppss]
type = PorousFlow1PhaseP
porepressure = porepressure
capillary_pressure = pc
[]
[massfrac]
type = PorousFlowMassFraction
[]
[simple_fluid]
type = PorousFlowSingleComponentFluid
fp = simple_fluid
phase = 0
[]
[porosity_bulk]
type = PorousFlowPorosity
fluid = true
mechanical = true
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
ensure_positive = true
porosity_zero = 0.02
solid_bulk = 5.3333E3
[]
[porosity_excav]
type = PorousFlowPorosityConst
block = 1
porosity = 1.0
[]
[permeability_bulk]
type = PorousFlowPermeabilityKozenyCarman
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
poroperm_function = kozeny_carman_phi0
k0 = 1E-15
phi0 = 0.02
n = 2
m = 2
[]
[permeability_excav]
type = PorousFlowPermeabilityConst
block = 1
permeability = '0 0 0 0 0 0 0 0 0'
[]
[relperm]
type = PorousFlowRelativePermeabilityCorey
n = 4
s_res = 0.4
sum_s_res = 0.4
phase = 0
[]
[elasticity_tensor_0]
type = ComputeLayeredCosseratElasticityTensor
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
young = 8E3 # MPa
poisson = 0.25
layer_thickness = 1.0
joint_normal_stiffness = 1E9 # huge
joint_shear_stiffness = 1E3 # MPa
[]
[elasticity_tensor_1]
type = ComputeLayeredCosseratElasticityTensor
block = 1
young = 8E3 # MPa
poisson = 0.25
layer_thickness = 1.0
joint_normal_stiffness = 1E9 # huge
joint_shear_stiffness = 1E3 # MPa
elasticity_tensor_prefactor = excav_sideways
[]
[strain]
type = ComputeCosseratIncrementalSmallStrain
eigenstrain_names = ini_stress
[]
[ini_stress]
type = ComputeEigenstrainFromInitialStress
eigenstrain_name = ini_stress
initial_stress = 'ini_xx 0 0 0 ini_xx 0 0 0 ini_zz'
[]
[stress_0]
type = ComputeMultipleInelasticCosseratStress
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
inelastic_models = 'mc wp'
cycle_models = true
relative_tolerance = 2.0
absolute_tolerance = 1E6
max_iterations = 1
tangent_operator = nonlinear
perform_finite_strain_rotations = false
[]
[stress_1]
type = ComputeMultipleInelasticCosseratStress
block = 1
inelastic_models = ''
relative_tolerance = 2.0
absolute_tolerance = 1E6
max_iterations = 1
tangent_operator = nonlinear
perform_finite_strain_rotations = false
[]
[mc]
type = CappedMohrCoulombCosseratStressUpdate
warn_about_precision_loss = false
host_youngs_modulus = 8E3
host_poissons_ratio = 0.25
base_name = mc
tensile_strength = mc_tensile_str_strong_harden
compressive_strength = mc_compressive_str
cohesion = mc_coh_strong_harden
friction_angle = mc_fric
dilation_angle = mc_dil
max_NR_iterations = 100000
smoothing_tol = 0.1 # MPa # Must be linked to cohesion
yield_function_tol = 1E-9 # MPa. this is essentially the lowest possible without lots of precision loss
perfect_guess = true
min_step_size = 1.0
[]
[wp]
type = CappedWeakPlaneCosseratStressUpdate
warn_about_precision_loss = false
base_name = wp
cohesion = wp_coh_harden
tan_friction_angle = wp_tan_fric
tan_dilation_angle = wp_tan_dil
tensile_strength = wp_tensile_str_harden
compressive_strength = wp_compressive_str_soften
max_NR_iterations = 10000
tip_smoother = 0.05
smoothing_tol = 0.05 # MPa # Note, this must be tied to cohesion, otherwise get no possible return at cone apex
yield_function_tol = 1E-11 # MPa. this is essentially the lowest possible without lots of precision loss
perfect_guess = true
min_step_size = 1.0E-3
[]
[undrained_density_0]
type = GenericConstantMaterial
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
prop_names = density
prop_values = 2500
[]
[undrained_density_1]
type = GenericFunctionMaterial
block = 1
prop_names = density
prop_values = density_sideways
[]
[]
[Preconditioning]
[SMP]
type = SMP
full = true
[]
[]
[Postprocessors]
[min_roof_disp]
type = NodalExtremeValue
boundary = roof
value_type = min
variable = disp_z
[]
[min_roof_pp]
type = NodalExtremeValue
boundary = roof
value_type = min
variable = porepressure
[]
[min_surface_disp]
type = NodalExtremeValue
boundary = zmax
value_type = min
variable = disp_z
[]
[min_surface_pp]
type = NodalExtremeValue
boundary = zmax
value_type = min
variable = porepressure
[]
[max_perm_zz]
type = ElementExtremeValue
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
variable = perm_zz
[]
[]
[Executioner]
type = Transient
solve_type = 'NEWTON'
petsc_options = '-snes_converged_reason'
# best overall
# petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
# petsc_options_value = ' lu mumps'
# best if you do not have mumps:
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu superlu_dist'
# best if you do not have mumps or superlu_dist:
#petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
#petsc_options_value = ' asm 2 lu gmres 200'
# very basic:
#petsc_options_iname = '-pc_type -ksp_type -ksp_gmres_restart'
#petsc_options_value = ' bjacobi gmres 200'
line_search = bt
nl_abs_tol = 1e-3
nl_rel_tol = 1e-5
l_max_its = 200
nl_max_its = 30
start_time = 0.0
dt = 0.014706
end_time = 0.014706 #0.5
[]
[Outputs]
interval = 1
print_linear_residuals = true
exodus = true
csv = true
console = true
[]
(modules/navier_stokes/test/tests/postprocessors/conservation_INSFE.i)
[Mesh]
second_order = true
inactive = 'mesh internal_boundary_bot internal_boundary_top'
[mesh]
type = CartesianMeshGenerator
dim = 2
dx = '1'
dy = '1 1 1'
ix = '5'
iy = '5 5 5'
subdomain_id = '1
2
3'
[]
[internal_boundary_bot]
type = SideSetsBetweenSubdomainsGenerator
input = mesh
new_boundary = 'internal_bot'
primary_block = 1
paired_block = 2
[]
[internal_boundary_top]
type = SideSetsBetweenSubdomainsGenerator
input = internal_boundary_bot
new_boundary = 'internal_top'
primary_block = 2
paired_block = 3
[]
[diverging_mesh]
type = FileMeshGenerator
file = 'expansion_quad.e'
[]
[]
[Modules]
[IncompressibleNavierStokes]
equation_type = steady-state
# no slip BCs
velocity_boundary = 'bottom right left'
velocity_function = '0 1 0 0 0 0'
pressure_boundary = 'top'
pressure_function = '1'
density_name = rho
dynamic_viscosity_name = mu
integrate_p_by_parts = false
order = SECOND
[]
[]
[Materials]
[const]
type = GenericConstantMaterial
block = '1 2 3'
prop_names = 'rho mu'
prop_values = '1 1'
[]
[ADconst]
type = ADGenericConstantMaterial
block = '1 2 3'
prop_names = 'rho_ad'
prop_values = '1'
[]
[]
[Preconditioning]
[SMP_PJFNK]
type = SMP
full = true
[]
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-ksp_gmres_restart -pc_type -sub_pc_type -sub_pc_factor_levels'
petsc_options_value = '300 bjacobi ilu 4'
line_search = none
nl_rel_tol = 1e-12
nl_max_its = 6
l_tol = 1e-6
l_max_its = 300
[]
[Postprocessors]
[inlet_mass_constant]
type = VolumetricFlowRate
boundary = bottom
vel_x = vel_x
vel_y = vel_y
advected_variable = 1
[]
[inlet_mass_matprop]
type = VolumetricFlowRate
boundary = bottom
vel_x = vel_x
vel_y = vel_y
advected_mat_prop = 'rho_ad'
[]
[mid1_mass]
type = InternalVolumetricFlowRate
boundary = internal_bot
vel_x = vel_x
vel_y = vel_y
[]
[mid2_mass]
type = InternalVolumetricFlowRate
boundary = internal_top
vel_x = vel_x
vel_y = vel_y
[]
[outlet_mass]
type = VolumetricFlowRate
boundary = top
vel_x = vel_x
vel_y = vel_y
[]
[inlet_momentum_x]
type = VolumetricFlowRate
boundary = bottom
vel_x = vel_x
vel_y = vel_y
advected_variable = vel_x
[]
[mid1_momentum_x]
type = InternalVolumetricFlowRate
boundary = internal_bot
vel_x = vel_x
vel_y = vel_y
advected_variable = vel_x
[]
[mid2_momentum_x]
type = InternalVolumetricFlowRate
boundary = internal_top
vel_x = vel_x
vel_y = vel_y
advected_variable = vel_x
[]
[outlet_momentum_x]
type = VolumetricFlowRate
boundary = top
vel_x = vel_x
vel_y = vel_y
advected_variable = vel_x
[]
[inlet_momentum_y]
type = VolumetricFlowRate
boundary = bottom
vel_x = vel_x
vel_y = vel_y
advected_variable = vel_y
[]
[mid1_momentum_y]
type = InternalVolumetricFlowRate
boundary = internal_bot
vel_x = vel_x
vel_y = vel_y
advected_variable = vel_y
[]
[mid2_momentum_y]
type = InternalVolumetricFlowRate
boundary = internal_top
vel_x = vel_x
vel_y = vel_y
advected_variable = vel_y
[]
[outlet_momentum_y]
type = VolumetricFlowRate
boundary = top
vel_x = vel_x
vel_y = vel_y
advected_variable = vel_y
[]
[]
[Outputs]
exodus = false
csv = true
inactive = 'console_mass console_momentum_x console_momentum_y'
[console_mass]
type = Console
start_step = 1
show = 'inlet_mass_variable inlet_mass_constant inlet_mass_matprop mid1_mass mid2_mass outlet_mass'
[]
[console_momentum_x]
type = Console
start_step = 1
show = 'inlet_momentum_x mid1_momentum_x mid2_momentum_x outlet_momentum_x'
[]
[console_momentum_y]
type = Console
start_step = 1
show = 'inlet_momentum_y mid1_momentum_y mid2_momentum_y outlet_momentum_y'
[]
[]
(test/tests/mesh_modifiers/break_mesh_by_blocks/2D/TestBreakMesh_2DJunction_Auto.i)
[Mesh]
[file]
type = FileMeshGenerator
file = 4ElementJunction.e
[]
[breakmesh]
type = BreakMeshByBlockGenerator
input = file
[]
[]
(test/tests/meshgenerators/break_mesh_by_block_generator/break_mesh_3D_splittrue.i)
[Mesh]
[./fmg]
type = FileMeshGenerator
file = coh3D_3Blocks.e
#parallel_type = replicated
[]
[./breakmesh]
type = BreakMeshByBlockGenerator
input = fmg
split_interface = true
[]
[]
[Outputs]
exodus = true
[]
(modules/contact/test/tests/pdass_problems/cylinder_friction.i)
[GlobalParams]
volumetric_locking_correction = true
displacements = 'disp_x disp_y'
[]
[Mesh]
[input_file]
type = FileMeshGenerator
file = hertz_cyl_coarser.e
[]
[secondary]
type = LowerDBlockFromSidesetGenerator
new_block_id = 10001
new_block_name = 'secondary_lower'
sidesets = '3'
input = input_file
[]
[primary]
type = LowerDBlockFromSidesetGenerator
new_block_id = 10000
sidesets = '2'
new_block_name = 'primary_lower'
input = secondary
[]
[]
[Problem]
type = ReferenceResidualProblem
extra_tag_vectors = 'ref'
reference_vector = 'ref'
[]
[Variables]
[disp_x]
[]
[disp_y]
[]
[frictionless_normal_lm]
order = FIRST
family = LAGRANGE
block = 'secondary_lower'
use_dual = true
[]
[tangential_lm]
block = 'secondary_lower'
use_dual = true
[]
[]
[AuxVariables]
[stress_xx]
order = CONSTANT
family = MONOMIAL
[]
[stress_yy]
order = CONSTANT
family = MONOMIAL
[]
[stress_xy]
order = CONSTANT
family = MONOMIAL
[]
[saved_x]
[]
[saved_y]
[]
[diag_saved_x]
[]
[diag_saved_y]
[]
[]
[Functions]
[disp_ramp_vert]
type = PiecewiseLinear
x = '0. 1. 3.5'
y = '0. -0.020 -0.020'
[]
[disp_ramp_horz]
type = PiecewiseLinear
x = '0. 1. 3.5'
y = '0. 0.0 0.015'
[]
[]
[Kernels]
[TensorMechanics]
use_displaced_mesh = true
save_in = 'saved_x saved_y'
extra_vector_tags = 'ref'
block = '1 2 3 4 5 6 7'
[]
[]
[AuxKernels]
[stress_xx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xx
index_i = 0
index_j = 0
execute_on = timestep_end
block = '1 2 3 4 5 6 7'
[]
[stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
execute_on = timestep_end
block = '1 2 3 4 5 6 7'
[]
[stress_xy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xy
index_i = 0
index_j = 1
execute_on = timestep_end
block = '1 2 3 4 5 6 7'
[]
[]
[Postprocessors]
[bot_react_x]
type = NodalSum
variable = saved_x
boundary = 1
[]
[bot_react_y]
type = NodalSum
variable = saved_y
boundary = 1
[]
[top_react_x]
type = NodalSum
variable = saved_x
boundary = 4
[]
[top_react_y]
type = NodalSum
variable = saved_y
boundary = 4
[]
[_dt]
type = TimestepSize
[]
[num_lin_it]
type = NumLinearIterations
[]
[num_nonlin_it]
type = NumNonlinearIterations
[]
[]
[BCs]
[side_x]
type = DirichletBC
variable = disp_y
boundary = '1 2'
value = 0.0
[]
[bot_y]
type = DirichletBC
variable = disp_x
boundary = '1 2'
value = 0.0
[]
[top_y_disp]
type = FunctionDirichletBC
variable = disp_y
boundary = 4
function = disp_ramp_vert
[]
[top_x_disp]
type = FunctionDirichletBC
variable = disp_x
boundary = 4
function = disp_ramp_horz
[]
[]
[Materials]
[stuff1_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '1'
youngs_modulus = 1e10
poissons_ratio = 0.0
[]
[stuff1_strain]
type = ComputeFiniteStrain
block = '1'
[]
[stuff1_stress]
type = ComputeFiniteStrainElasticStress
block = '1'
[]
[stuff2_elas_tens]
type = ComputeIsotropicElasticityTensor
block = '2 3 4 5 6 7'
youngs_modulus = 1e6
poissons_ratio = 0.3
[]
[stuff2_strain]
type = ComputeFiniteStrain
block = '2 3 4 5 6 7'
[]
[stuff2_stress]
type = ComputeFiniteStrainElasticStress
block = '2 3 4 5 6 7'
[]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount -mat_mffd_err'
petsc_options_value = 'lu NONZERO 1e-15 1e-5'
line_search = 'none'
nl_abs_tol = 1e-5
nl_rel_tol = 1e-5
l_max_its = 100
nl_max_its = 30
start_time = 0.0
end_time = 0.3 # 3.5
l_tol = 1e-4
dt = 0.1
dtmin = 0.001
[]
[Preconditioning]
[SMP]
type = SMP
full = true
[]
[]
[VectorPostprocessors]
[x_disp]
type = NodalValueSampler
variable = disp_x
boundary = '3 4'
sort_by = id
[]
[y_disp]
type = NodalValueSampler
variable = disp_y
boundary = '3 4'
sort_by = id
[]
[cont_press]
type = NodalValueSampler
variable = frictionless_normal_lm
boundary = '3'
sort_by = id
[]
[friction]
type = NodalValueSampler
variable = frictionless_normal_lm
boundary = '3'
sort_by = id
[]
[]
[Outputs]
print_linear_residuals = true
perf_graph = true
exodus = true
[console]
type = Console
max_rows = 5
[]
[chkfile]
type = CSV
show = 'x_disp y_disp cont_press friction'
start_time = 0.0
execute_vector_postprocessors_on = FINAL
[]
[]
[Constraints]
[weighted_gap_lm]
type = ComputeFrictionalForceLMMechanicalContact
primary_boundary = 2
secondary_boundary = 3
primary_subdomain = 10000
secondary_subdomain = 10001
variable = frictionless_normal_lm
disp_x = disp_x
disp_y = disp_y
use_displaced_mesh = true
friction_lm = tangential_lm
mu = 0.4
c_t = 1.0e5
c = 1.0e6
[]
[x]
type = NormalMortarMechanicalContact
primary_boundary = '2'
secondary_boundary = '3'
primary_subdomain = '10000'
secondary_subdomain = '10001'
variable = frictionless_normal_lm
secondary_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = false
[]
[y]
type = NormalMortarMechanicalContact
primary_boundary = '2'
secondary_boundary = '3'
primary_subdomain = '10000'
secondary_subdomain = '10001'
variable = frictionless_normal_lm
secondary_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = false
[]
[tangential_x]
type = TangentialMortarMechanicalContact
primary_boundary = 2
secondary_boundary = 3
primary_subdomain = 10000
secondary_subdomain = 10001
variable = tangential_lm
secondary_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = false
[]
[tangential_y]
type = TangentialMortarMechanicalContact
primary_boundary = 2
secondary_boundary = 3
primary_subdomain = 10000
secondary_subdomain = 10001
variable = tangential_lm
secondary_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = false
[]
[]
(modules/heat_conduction/test/tests/gap_heat_transfer_htonly/cyl2D_xz.i)
#
# 2D Cylindrical Gap Heat Transfer Test.
#
# This test exercises 2D gap heat transfer for a constant conductivity gap.
#
# The mesh consists of an inner solid cylinder of radius = 1 unit, and outer
# hollow cylinder with an inner radius of 2 in the x-z plane. In other words,
# the gap between them is 1 radial unit in length.
#
# The calculated results are the same as for the cyl2D.i case in the x-y plane.
[GlobalParams]
order = SECOND
family = LAGRANGE
[]
[Mesh]
[file]
type = FileMeshGenerator
file = cyl2D.e
[]
[./rotate]
type = TransformGenerator
transform = ROTATE
vector_value = '0 90 0'
input = file
[../]
[]
[Functions]
[./temp]
type = PiecewiseLinear
x = '0 1'
y = '100 200'
[../]
[]
[Variables]
[./temp]
initial_condition = 100
[../]
[]
[AuxVariables]
[./gap_conductance]
order = CONSTANT
family = MONOMIAL
[../]
[]
[Kernels]
[./heat_conduction]
type = HeatConduction
variable = temp
[../]
[]
[AuxKernels]
[./gap_cond]
type = MaterialRealAux
property = gap_conductance
variable = gap_conductance
boundary = 2
[../]
[]
[Materials]
[./heat1]
type = HeatConductionMaterial
block = '1 2'
specific_heat = 1.0
thermal_conductivity = 1000000.0
[../]
[]
[ThermalContact]
[./thermal_contact]
type = GapHeatTransfer
variable = temp
primary = 3
secondary = 2
emissivity_primary = 0
emissivity_secondary = 0
gap_conductivity = 1
quadrature = true
gap_geometry_type = CYLINDER
cylinder_axis_point_1 = '0 0 0'
cylinder_axis_point_2 = '0 1 0'
[../]
[]
[BCs]
[./mid]
type = FunctionDirichletBC
boundary = 1
variable = temp
function = temp
[../]
[./temp_far_right]
type = DirichletBC
boundary = 4
variable = temp
value = 100
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = 'lu superlu_dist'
dt = 1
dtmin = 0.01
end_time = 1
nl_rel_tol = 1e-12
nl_abs_tol = 1e-7
[./Quadrature]
order = fifth
side_order = seventh
[../]
[]
[Outputs]
exodus = true
[]
[Postprocessors]
[./temp_left]
type = SideAverageValue
boundary = 2
variable = temp
[../]
[./temp_right]
type = SideAverageValue
boundary = 3
variable = temp
[../]
[./flux_left]
type = SideDiffusiveFluxIntegral
variable = temp
boundary = 2
diffusivity = thermal_conductivity
[../]
[./flux_right]
type = SideDiffusiveFluxIntegral
variable = temp
boundary = 3
diffusivity = thermal_conductivity
[../]
[]
(modules/contact/test/tests/bouncing-block-contact/ping-ponging/mortar-no-ping-pong.i)
starting_point = 2e-1
offset = 1e-2
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Mesh]
[file]
type = FileMeshGenerator
file = long-bottom-block-no-lower-d.e
[]
[]
[Variables]
[disp_x]
[]
[disp_y]
[]
[]
[ICs]
[disp_y]
block = 2
variable = disp_y
value = '${fparse starting_point + offset}'
type = ConstantIC
[]
[]
[Modules/TensorMechanics/Master]
[all]
add_variables = false
use_automatic_differentiation = true
strain = SMALL
[]
[]
[Materials]
[elasticity]
type = ADComputeIsotropicElasticityTensor
youngs_modulus = 1e0
poissons_ratio = 0.3
[]
[stress]
type = ADComputeLinearElasticStress
[]
[]
[Contact]
[leftright]
mesh = file
secondary = 10
primary = 20
model = frictionless
formulation = mortar
c_normal = 1e-2
mortar_approach = legacy
[]
[]
[BCs]
[botx]
type = DirichletBC
variable = disp_x
boundary = 40
value = 0.0
[]
[boty]
type = DirichletBC
variable = disp_y
boundary = 40
value = 0.0
[]
[topy]
type = FunctionDirichletBC
variable = disp_y
boundary = 30
function = '${starting_point} * cos(2 * pi / 40 * t) + ${offset}'
[]
[leftx]
type = FunctionDirichletBC
variable = disp_x
boundary = 50
function = '1e-2 * t'
[]
[]
[Executioner]
type = Transient
num_steps = 40
end_time = 200
dt = 5
dtmin = 5
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type'
petsc_options_value = 'lu 1e-5 NONZERO'
l_max_its = 30
nl_max_its = 20
line_search = 'none'
[]
[Debug]
show_var_residual_norms = true
[]
[Outputs]
[exo]
type = Exodus
[]
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
(test/tests/mesh_modifiers/add_all_side_sets/less_simple.i)
[Mesh]
[file]
type = FileMeshGenerator
file = reactor.e
[]
[block_1]
type = AllSideSetsByNormalsGenerator
input = file
[]
[]
# This input file is intended to be run with the "--mesh-only" option so
# no other sections are required
(modules/heat_conduction/test/tests/gap_heat_transfer_mortar/gap_heat_transfer_mortar.i)
[Mesh]
[file]
type = FileMeshGenerator
file = 2blk-gap.e
[]
[secondary]
type = LowerDBlockFromSidesetGenerator
sidesets = '101'
new_block_id = '10001'
new_block_name = 'secondary_lower'
input = file
[]
[primary]
type = LowerDBlockFromSidesetGenerator
sidesets = '100'
new_block_id = '10000'
new_block_name = 'primary_lower'
input = secondary
[]
[]
[Problem]
kernel_coverage_check = false
material_coverage_check = false
[]
[Variables]
[./temp]
order = FIRST
family = LAGRANGE
block = '1 2'
[../]
[./lm]
order = FIRST
family = LAGRANGE
block = 'secondary_lower'
[../]
[]
[Materials]
[./left]
type = HeatConductionMaterial
block = 1
thermal_conductivity = 1000
specific_heat = 1
[../]
[./right]
type = HeatConductionMaterial
block = 2
thermal_conductivity = 500
specific_heat = 1
[../]
[]
[Kernels]
[./hc]
type = HeatConduction
variable = temp
use_displaced_mesh = false
block = '1 2'
[../]
[]
[Constraints]
[./ced]
type = GapConductanceConstraint
variable = lm
secondary_variable = temp
k = 100
primary_boundary = 100
primary_subdomain = 10000
secondary_boundary = 101
secondary_subdomain = 10001
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = temp
boundary = 'left'
value = 1
[../]
[./right]
type = DirichletBC
variable = temp
boundary = 'right'
value = 0
[../]
[]
[Preconditioning]
[./fmp]
type = SMP
full = true
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
nl_rel_tol = 1e-11
[]
[Outputs]
exodus = true
[]
(modules/porous_flow/examples/groundwater/ex02_steady_state.i)
# Steady-state groundwater model. See groundwater_models.md for a detailed description
[Mesh]
[basic_mesh]
# mesh create by external program: lies within -500<=x<=500 and -200<=y<=200, with varying z
type = FileMeshGenerator
file = ex02_mesh.e
[]
[name_blocks]
type = RenameBlockGenerator
input = basic_mesh
old_block_id = '2 3 4'
new_block_name = 'bot_aquifer aquitard top_aquifer'
[]
[zmax]
type = SideSetsFromNormalsGenerator
input = name_blocks
new_boundary = zmax
normals = '0 0 1'
[]
[xmin_bot_aquifer]
type = ParsedGenerateSideset
input = zmax
included_subdomain_ids = 2
normal = '-1 0 0'
combinatorial_geometry = 'x <= -500.0'
new_sideset_name = xmin_bot_aquifer
[]
[]
[GlobalParams]
PorousFlowDictator = dictator
[]
[Variables]
[pp]
[]
[]
[ICs]
[pp]
type = FunctionIC
variable = pp
function = initial_pp
[]
[]
[BCs]
[rainfall_recharge]
type = PorousFlowSink
boundary = zmax
variable = pp
flux_function = -1E-6 # recharge of 0.1mm/day = 1E-4m3/m2/day = 0.1kg/m2/day ~ 1E-6kg/m2/s
[]
[evapotranspiration]
type = PorousFlowHalfCubicSink
boundary = zmax
variable = pp
center = 0.0
cutoff = -5E4 # roots of depth 5m. 5m of water = 5E4 Pa
use_mobility = true
fluid_phase = 0
# Assume pan evaporation of 4mm/day = 4E-3m3/m2/day = 4kg/m2/day ~ 4E-5kg/m2/s
# Assume that if permeability was 1E-10m^2 and water table at topography then ET acts as pan strength
# Because use_mobility = true, then 4E-5 = maximum_flux = max * perm * density / visc = max * 1E-4, so max = 40
max = 40
[]
[]
[DiracKernels]
[river]
type = PorousFlowPolyLineSink
SumQuantityUO = baseflow
point_file = ex02_river.bh
# Assume a perennial river.
# Assume the river has an incision depth of 1m and a stage height of 1.5m, and these are constant in time and uniform over the whole model. Hence, if groundwater head is 0.5m (5000Pa) there will be no baseflow and leakage.
p_or_t_vals = '-999995000 5000 1000005000'
# Assume the riverbed conductance, k_zz*density*river_segment_length*river_width/riverbed_thickness/viscosity = 1E-6*river_segment_length kg/Pa/s
fluxes = '-1E3 0 1E3'
variable = pp
[]
[]
[Functions]
[initial_pp]
type = SolutionFunction
scale_factor = 1E4
from_variable = cosflow_depth
solution = initial_mesh
[]
[baseflow_rate]
type = ParsedFunction
vars = 'baseflow_kg dt'
vals = 'baseflow_kg dt'
value = 'baseflow_kg / dt * 24.0 * 3600.0 / 400.0'
[]
[]
[PorousFlowUnsaturated]
fp = simple_fluid
porepressure = pp
[]
[Modules]
[FluidProperties]
[simple_fluid]
type = SimpleFluidProperties
[]
[]
[]
[Materials]
[porosity_everywhere]
type = PorousFlowPorosityConst
porosity = 0.05
[]
[permeability_aquifers]
type = PorousFlowPermeabilityConst
block = 'top_aquifer bot_aquifer'
permeability = '1E-12 0 0 0 1E-12 0 0 0 1E-13'
[]
[permeability_aquitard]
type = PorousFlowPermeabilityConst
block = aquitard
permeability = '1E-16 0 0 0 1E-16 0 0 0 1E-17'
[]
[]
[UserObjects]
[initial_mesh]
type = SolutionUserObject
execute_on = INITIAL
mesh = ex02_mesh.e
timestep = LATEST
system_variables = cosflow_depth
[]
[baseflow]
type = PorousFlowSumQuantity
[]
[]
[Postprocessors]
[baseflow_kg]
type = PorousFlowPlotQuantity
uo = baseflow
outputs = 'none'
[]
[dt]
type = TimestepSize
outputs = 'none'
[]
[baseflow_l_per_m_per_day]
type = FunctionValuePostprocessor
function = baseflow_rate
[]
[]
[Preconditioning]
[smp]
type = SMP
full = true
# following 2 lines are not mandatory, but illustrate a popular preconditioner choice in groundwater models
petsc_options_iname = '-pc_type -sub_pc_type -pc_asm_overlap'
petsc_options_value = ' asm ilu 2 '
[]
[]
[Executioner]
type = Transient
solve_type = Newton
dt = 1E6
[TimeStepper]
type = FunctionDT
function = 'max(1E6, t)'
[]
end_time = 1E12
nl_abs_tol = 1E-13
[]
[Outputs]
print_linear_residuals = false
[ex]
type = Exodus
execute_on = final
[]
[csv]
type = CSV
[]
[]
(test/tests/mesh/subdomain_partitioner/subdomain_partitioner.i)
[Mesh]
[file]
type = FileMeshGenerator
file = test_subdomain_partitioner.e
[]
[./Partitioner]
type = LibmeshPartitioner
partitioner = subdomain_partitioner
blocks = '1 2 3 4; 1001 1002 1003 1004'
[../]
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
[../]
[]
[AuxVariables]
[./proc_id]
order = CONSTANT
family = MONOMIAL
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[AuxKernels]
[./proc_id]
type = ProcessorIDAux
variable = proc_id
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
[]
[Outputs]
file_base = subdomain_partitioner_out
[./exodus]
type = Exodus
elemental_as_nodal = true
[../]
[]
(test/tests/mortar/displaced-gap-conductance-2d-bnd-coupling/gap-conductance.i)
[Mesh]
displacements = 'disp_x disp_y'
[file]
type = FileMeshGenerator
file = nodal_normals_test_offset_nonmatching_gap.e
# block 1: left
# block 2: right
[]
[./primary]
input = file
type = LowerDBlockFromSidesetGenerator
sidesets = '2'
new_block_id = '20'
[../]
[./secondary]
input = primary
type = LowerDBlockFromSidesetGenerator
sidesets = '1'
new_block_id = '10'
[../]
[]
[AuxVariables]
[disp_x]
block = '1 2'
[]
[disp_y]
block = '1 2'
[]
[aux_var]
[]
[]
[AuxKernels]
[function_x]
type = FunctionAux
function = '.05 * t'
variable = 'disp_x'
block = '2'
[]
[function_y]
type = FunctionAux
function = '.05 * t'
variable = 'disp_y'
block = '2'
[]
[flux_modifier]
type = StatefulAuxLowerD
variable = 'aux_var'
coupled_variable = 'lambda'
boundary = '1'
[]
[]
[Problem]
kernel_coverage_check = false
[]
[Variables]
[./T]
block = '1 2'
[../]
[./lambda]
block = '10'
family = LAGRANGE
order = FIRST
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = T
boundary = '5'
value = 0
[../]
[./right]
type = DirichletBC
variable = T
boundary = '8'
value = 1
[../]
[]
[Kernels]
[./conduction]
type = Diffusion
variable = T
block = '1 2'
[../]
[]
[Debug]
show_var_residual_norms = 1
[]
[Constraints]
[./mortar]
type = GapHeatConductanceAuxKernel
primary_boundary = 2
secondary_boundary = 1
primary_subdomain = 20
secondary_subdomain = 10
variable = lambda
secondary_variable = T
use_displaced_mesh = true
auxkernel_variable = 'aux_var'
[../]
[]
[Materials]
[constant]
type = ADGenericConstantMaterial
prop_names = 'gap_conductance'
prop_values = '.03'
block = '1 2'
use_displaced_mesh = true
[]
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Executioner]
solve_type = NEWTON
type = Transient
num_steps = 5
petsc_options_iname = '-pc_type -snes_linesearch_type'
petsc_options_value = 'lu basic'
[]
[Outputs]
exodus = true
[dofmap]
type = DOFMap
execute_on = 'initial'
[]
[]
(test/tests/meshgenerators/tiled_mesh_generator/tiled_mesh_generator.i)
[Mesh]
[./fmg]
type = FileMeshGenerator
file = cube.e
[]
[./tmg]
type = TiledMeshGenerator
input = fmg
left_boundary = left
right_boundary = right
top_boundary = top
bottom_boundary = bottom
front_boundary = front
back_boundary = back
x_tiles = 2
y_tiles = 2
z_tiles = 2
# You can only run this test with ReplicatedMesh because the underlying
# algorithm, stitch_meshes(), only works with ReplicatedMesh.
parallel_type = replicated
[]
[]
[Outputs]
exodus = true
[]
(test/tests/meshgenerators/sidesets_by_normals_generator/less_simple.i)
[Mesh]
[./fmg]
type = FileMeshGenerator
file = reactor.e
[]
[./generate_sidesets]
type = AllSideSetsByNormalsGenerator
input = fmg
[]
[]
[Outputs]
exodus = true
[]
(test/tests/meshgenerators/block_deletion_generator/block_deletion_test11.i)
[Mesh]
[./fmg]
type = FileMeshGenerator
file = pyramid.e
[]
[./sbb2]
type = SubdomainBoundingBoxGenerator
input = fmg
block_id = 2
bottom_left = '-0.5 -0.5 -0.5'
top_right = '0.5 0.5 0.5'
[../]
[./swiss_cheese2]
type = BlockDeletionGenerator
block = 2
input = 'sbb2'
[../]
[./sbb3]
type = SubdomainBoundingBoxGenerator
input = swiss_cheese2
block_id = 3
bottom_left = '-5 -5 -3'
top_right = '-2 -2 -1'
[../]
[./swiss_cheese3]
type = BlockDeletionGenerator
block = 3
input = 'sbb3'
[../]
[./sbb4]
type = SubdomainBoundingBoxGenerator
input = swiss_cheese3
block_id = 4
bottom_left = '-1 2 -2'
top_right = '1 5 0'
[../]
[./swiss_cheese4]
type = BlockDeletionGenerator
block = 4
input = 'sbb4'
[../]
[./sbb5]
type = OrientedSubdomainBoundingBoxGenerator
input = swiss_cheese4
block_id = 5
center = '2.4 -1.4 0.4'
height = 3
length = 8
length_direction = '-2 1 -1'
width = 3
width_direction = '1 2 0'
[../]
[./swiss_cheese5]
type = BlockDeletionGenerator
block = 5
input = 'sbb5'
[../]
[./sbb6]
type = OrientedSubdomainBoundingBoxGenerator
input = swiss_cheese5
block_id = 6
center = '-1 0.4 2.2'
height = 1
length = 8
length_direction = '2 -1 -1'
width = 1
width_direction = '1 2 0'
[../]
[./swiss_cheese6]
type = BlockDeletionGenerator
block = 6
input = 'sbb6'
[../]
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./dt]
type = TimeDerivative
variable = u
[../]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./top]
type = DirichletBC
variable = u
boundary = top
value = 1
[../]
[]
[Executioner]
type = Transient
start_time = 0
end_time = 100
dt = 100
solve_type = NEWTON
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(test/tests/meshgenerators/mesh_extruder_generator/extrude_angle.i)
[Mesh]
[./fmg]
type = FileMeshGenerator
file = chimney_quad.e
[]
[./extrude]
type = MeshExtruderGenerator
input = fmg
num_layers = 20
extrusion_vector = '1e-2 1e-2 0'
bottom_sideset = '10'
top_sideset = '20'
[]
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./bottom]
type = DirichletBC
variable = u
boundary = 10
value = 0
[../]
[./top]
type = DirichletBC
variable = u
boundary = 20
value = 1
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
[]
[Outputs]
file_base = out_quad_angle
exodus = true
[]
(test/tests/mesh_modifiers/break_mesh_by_blocks/2D/TestBreakMesh_2DJunction_splitTrue_Auto.i)
[Mesh]
[file]
type = FileMeshGenerator
file = 4ElementJunction.e
[]
[breakmesh]
type = BreakMeshByBlockGenerator
input = file
split_interface = true
[]
[]
# This input file is intended to be run with the "--mesh-only" option so
# no other sections are required
(modules/peridynamics/test/tests/simple_tests/2D_irregularD_variableH_OSPD.i)
# Test for ordinary state-based peridynamic formulation
# for irregular grid from file mesh with varying bond constants
# partial Jacobian
# Jacobian from bond-based formulation is used for preconditioning
# Square plate with Dirichlet boundary conditions applied
# at the left, top and bottom edges
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Mesh]
type = PeridynamicsMesh
horizon_number = 3
[./fmg]
type = FileMeshGenerator
file = square.e
[../]
[./gpd]
type = MeshGeneratorPD
input = fmg
retain_fe_mesh = false
[../]
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
boundary = 1001
value = 0.0
[../]
[./top_y]
type = DirichletBC
variable = disp_y
boundary = 1004
value = 0.0
[../]
[./bottom_y]
type = FunctionDirichletBC
variable = disp_y
boundary = 1002
function = '-0.001 * t'
[../]
[]
[Modules/Peridynamics/Mechanics/Master]
[./all]
formulation = ORDINARY_STATE
[../]
[]
[Materials]
[./elasticity_tensor]
type = ComputeIsotropicElasticityTensor
youngs_modulus = 2e5
poissons_ratio = 0.0
[../]
[./force_density]
type = ComputeSmallStrainVariableHorizonMaterialOSPD
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
solve_type = PJFNK
line_search = none
start_time = 0
end_time = 1
[]
[Outputs]
file_base = 2D_irregularD_variableH_OSPD
exodus = true
[]
(test/tests/meshgenerators/mesh_extruder_generator/extrude_remap_layer1.i)
[Mesh]
[./fmg]
type = FileMeshGenerator
file = multiblock.e
[]
[./extrude]
type = MeshExtruderGenerator
input = fmg
num_layers = 6
extrusion_vector = '0 0 2'
bottom_sideset = 'new_bottom'
top_sideset = 'new_top'
# Remap layers
existing_subdomains = '1 2 5'
layers = '1 3 5'
new_ids = '10 12 15
30 32 35
50 52 55'
[../]
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./bottom]
type = DirichletBC
variable = u
boundary = 'new_bottom'
value = 0
[../]
[./top]
type = DirichletBC
variable = u
boundary = 'new_top'
value = 1
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
[]
[Outputs]
exodus = true
[]
(test/tests/mesh_modifiers/smooth_mesh/mesh_smoother.i)
[Mesh]
[file]
type = FileMeshGenerator
file = concentric_circle_mesh_in.e
[]
[smooth]
type = SmoothMeshGenerator
input = file
iterations = 5
[]
[]
[Variables]
[u]
[]
[]
[Kernels]
[diff]
type = Diffusion
variable = u
[]
[]
[BCs]
[left]
type = DirichletBC
variable = u
boundary = 'left'
value = 0
[]
[right]
type = DirichletBC
variable = u
boundary = 'right'
value = 1
[]
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(modules/tensor_mechanics/test/tests/shell/static/pinched_cylinder_symm.i)
# Test for displacement of pinched cylinder
# Ref: Figure 10 and Table 6 from Dvorkin and Bathe, Eng. Comput., Vol. 1, 1984.
# A cylinder of radius 1 m and length 2 m (along Z axis) with clamped ends
# (at z = 0 and 2 m) is pinched at mid-length by placing point loads of 10 N
# at (1, 0, 1) and (-1, 0, 1). Due to the symmetry of the problem, only 1/8th
# of the cylinder needs to be modeled.
# The normalized series solution for the displacement at the loading point is
# w = Wc E t / P = 164.24; where Wc is the displacement in m, E is the Young's
# modulus, t is the thickness and P is the point load.
# For this problem, E = 1e6 Pa, L = 2 m, R = 1 m, t = 0.01 m, P = 10 N and
# Poisson's ratio = 0.3. FEM results from different mesh discretizations are
# presented below. Only the 10x10 mesh is included as a test.
# Mesh of 1/8 cylinder | FEM/analytical (Moose) | FEM/analytical (Dvorkin)
# |ratio of normalized disp.| ratio of normalized disp.
#----------------------|-------------------------|-------------------------
# 10 x 10 | 0.806 | 0.83
# 20 x 20 | 1.06 | 0.96
# 40 x 40 | 0.95 | -
# 80 x 160 | 0.96 | -
# The results from FEM analysis matches well with the series solution and with
# the solution presented by Dvorkin and Bathe (1984).
[Mesh]
[./mesh]
type = FileMeshGenerator
file = pinched_cyl_10_10.msh
[../]
[./block_100]
type = ParsedSubdomainMeshGenerator
input = mesh
combinatorial_geometry = 'x > -1.1 & x < 1.1 & y > -1.1 & y < 1.1 & z > -0.1 & z < 2.1'
block_id = 100
[../]
[./nodeset_1]
type = BoundingBoxNodeSetGenerator
input = block_100
top_right = '1.1 1.1 0'
bottom_left = '-1.1 -1.1 0'
new_boundary = 'CD' #CD
[../]
[./nodeset_2]
type = BoundingBoxNodeSetGenerator
input = nodeset_1
top_right = '1.1 1.1 1.0'
bottom_left = '-1.1 -1.1 1.0'
new_boundary = 'AB' #AB
[../]
[./nodeset_3]
type = BoundingBoxNodeSetGenerator
input = nodeset_2
top_right = '0.02 1.1 1.0'
bottom_left = '-0.1 0.98 0.0'
new_boundary = 'AD' #AD
[../]
[./nodeset_4]
type = BoundingBoxNodeSetGenerator
input = nodeset_3
top_right = '1.1 0.02 1.0'
bottom_left = '0.98 -0.1 0.0'
new_boundary = 'BC' #BC
[../]
[]
[Variables]
[./disp_x]
order = FIRST
family = LAGRANGE
[../]
[./disp_y]
order = FIRST
family = LAGRANGE
[../]
[./disp_z]
order = FIRST
family = LAGRANGE
[../]
[./rot_x]
order = FIRST
family = LAGRANGE
[../]
[./rot_y]
order = FIRST
family = LAGRANGE
[../]
[]
[BCs]
[./simply_support_x]
type = DirichletBC
variable = disp_x
boundary = 'CD AD'
value = 0.0
[../]
[./simply_support_y]
type = DirichletBC
variable = disp_y
boundary = 'CD BC'
value = 0.0
[../]
[./simply_support_z]
type = DirichletBC
variable = disp_z
boundary = 'CD AB'
value = 0.0
[../]
[./simply_support_rot_x]
type = DirichletBC
variable = rot_x
boundary = 'CD BC'
value = 0.0
[../]
[./simply_support_rot_y]
type = DirichletBC
variable = rot_y
boundary = 'CD AD'
value = 0.0
[../]
[]
[DiracKernels]
[./point1]
type = ConstantPointSource
variable = disp_x
point = '1 0 1'
value = -2.5 # P = 10
[../]
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
solve_type = NEWTON
line_search = 'none'
nl_rel_tol = 1e-10
nl_abs_tol = 1e-8
dt = 1.0
dtmin = 1.0
end_time = 1.0
[]
[Kernels]
[./solid_disp_x]
type = ADStressDivergenceShell
block = '100'
component = 0
variable = disp_x
through_thickness_order = SECOND
[../]
[./solid_disp_y]
type = ADStressDivergenceShell
block = '100'
component = 1
variable = disp_y
through_thickness_order = SECOND
[../]
[./solid_disp_z]
type = ADStressDivergenceShell
block = '100'
component = 2
variable = disp_z
through_thickness_order = SECOND
[../]
[./solid_rot_x]
type = ADStressDivergenceShell
block = '100'
component = 3
variable = rot_x
through_thickness_order = SECOND
[../]
[./solid_rot_y]
type = ADStressDivergenceShell
block = '100'
component = 4
variable = rot_y
through_thickness_order = SECOND
[../]
[]
[Materials]
[./elasticity]
type = ADComputeIsotropicElasticityTensorShell
youngs_modulus = 1e6
poissons_ratio = 0.3
block = '100'
through_thickness_order = SECOND
[../]
[./strain]
type = ADComputeIncrementalShellStrain
block = '100'
displacements = 'disp_x disp_y disp_z'
rotations = 'rot_x rot_y'
thickness = 0.01
through_thickness_order = SECOND
[../]
[./stress]
type = ADComputeShellStress
block = '100'
through_thickness_order = SECOND
[../]
[]
[Postprocessors]
[./disp_z2]
type = PointValue
point = '1 0 1'
variable = disp_x
[../]
[]
[Outputs]
exodus = true
[]
(modules/combined/test/tests/exception/ad.i)
[GlobalParams]
order = SECOND
displacements = 'disp_x disp_y'
[]
[Problem]
coord_type = RZ
[]
[Mesh]
patch_update_strategy = iteration
[./gen]
type = FileMeshGenerator
file = mesh.e
[../]
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[./temp]
initial_condition = 501
[../]
[]
[AuxVariables]
[./density_aux]
order = CONSTANT
family = MONOMIAL
[../]
[]
[Modules/TensorMechanics/Master]
[./finite]
strain = FINITE
use_automatic_differentiation = true
[../]
[]
[Kernels]
[./gravity]
type = ADGravity
variable = disp_y
value = -9.81
[../]
[./heat]
type = ADMatDiffusion
variable = temp
diffusivity = 1
[../]
[./heat_ie]
type = ADTimeDerivative
variable = temp
[../]
[]
[AuxKernels]
[./conductance]
type = ADMaterialRealAux
property = density
variable = density_aux
boundary = inner_surface
[../]
[]
[ThermalContact]
[./thermal_contact]
type = GapHeatTransfer
variable = temp
primary = outer_interior
secondary = inner_surface
emissivity_primary = 0
emissivity_secondary = 0
quadrature = true
[../]
[]
[BCs]
[./no_x]
type = ADDirichletBC
variable = disp_x
boundary = 'centerline'
value = 0.0
[../]
[./no_y]
type = ADDirichletBC
variable = disp_y
boundary = 'centerline outer_exterior'
value = 0.0
[../]
[./temp]
type = FunctionDirichletBC
boundary = outer_exterior
variable = temp
function = '500 + t'
[../]
[]
[Materials]
[./density]
type = ADGenericConstantMaterial
prop_names = 'density'
prop_values = '1'
[../]
[./elasticity_tensor]
type = ADComputeIsotropicElasticityTensor
youngs_modulus = 1e11
poissons_ratio = 0.3
[../]
[./inner_elastic_stress]
type = ADComputeMultipleInelasticStress
inelastic_models = 'inner_creep'
block = inner
outputs = all
[../]
[./inner_creep]
type = ADPowerLawCreepExceptionTest
coefficient = 10e-22
n_exponent = 2
activation_energy = 0
block = inner
[../]
[./outer_stressstress]
type = ADComputeFiniteStrainElasticStress
block = outer
[../]
[]
[Executioner]
type = Transient
petsc_options = ' -snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type'
petsc_options_value = 'lu'
line_search = none
nl_abs_tol = 1e-7
l_max_its = 20
num_steps = 1
dt = 1
dtmin = .1
[]
[Outputs]
exodus = true
[]
(test/tests/meshgenerators/break_mesh_by_block_generator/break_mesh_2DJunction_auto.i)
[Mesh]
[./fmg]
type = FileMeshGenerator
file = 4ElementJunction.e
[]
[./breakmesh]
type = BreakMeshByBlockGenerator
input = fmg
[]
[]
[Outputs]
exodus = true
[]
(test/tests/mesh_modifiers/mesh_extruder/extruder_quad.i)
[Mesh]
[file]
type = FileMeshGenerator
file = chimney_quad.e
[]
[extrude]
type = MeshExtruderGenerator
input = file
num_layers = 20
extrusion_vector = '0 1e-2 0'
bottom_sideset = 'new_bottom'
top_sideset = 'new_top'
[]
[]
[Variables]
[u]
order = FIRST
family = LAGRANGE
[]
[]
[Kernels]
[diff]
type = Diffusion
variable = u
[]
[]
[BCs]
[bottom]
type = DirichletBC
variable = u
boundary = 'new_bottom'
value = 0
[]
[top]
type = DirichletBC
variable = u
boundary = 'new_top'
value = 1
[]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
[]
[Outputs]
file_base = out_quad
exodus = true
[]
(test/tests/meshgenerators/stitched_mesh_generator/stitched_mesh_generator2.i)
[Mesh]
[./fmg_left]
type = FileMeshGenerator
file = left.e
[]
[./fmg_center]
type = FileMeshGenerator
file = center.e
[]
[./fmg_right]
type = FileMeshGenerator
file = right.e
[]
[./smg]
type = StitchedMeshGenerator
inputs = 'fmg_left fmg_center fmg_right'
clear_stitched_boundary_ids = true
stitch_boundaries_pairs = 'right left;
right left'
[]
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = left
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = right
value = 1
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(test/tests/mortar/continuity-2d-conforming/conforming.i)
[Mesh]
[file]
type = FileMeshGenerator
file = 2blk-conf.e
[]
[secondary]
input = file
type = LowerDBlockFromSidesetGenerator
sidesets = '101'
new_block_id = '10001'
new_block_name = 'secondary_lower'
[]
[primary]
input = secondary
type = LowerDBlockFromSidesetGenerator
sidesets = '100'
new_block_id = '10000'
new_block_name = 'primary_lower'
[]
[]
[Functions]
[./exact_sln]
type = ParsedFunction
value = y
[../]
[./ffn]
type = ParsedFunction
value = 0
[../]
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
block = '1 2'
[../]
[./lm]
order = FIRST
family = LAGRANGE
block = 'secondary_lower'
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[./ffn]
type = BodyForce
variable = u
function = ffn
[../]
[]
[Constraints]
[./ced]
type = EqualValueConstraint
variable = lm
secondary_variable = u
primary_boundary = 100
primary_subdomain = 10000
secondary_boundary = 101
secondary_subdomain = 10001
[../]
[]
[BCs]
[./all]
type = FunctionDirichletBC
variable = u
boundary = '1 2 3 4'
function = exact_sln
[../]
[]
[Postprocessors]
[./l2_error]
type = ElementL2Error
variable = u
function = exact_sln
block = '1 2'
execute_on = 'initial timestep_end'
[../]
[]
[Preconditioning]
[./fmp]
type = SMP
full = true
solve_type = 'NEWTON'
[../]
[]
[Executioner]
type = Steady
nl_rel_tol = 1e-11
l_tol = 1e-10
[]
[Outputs]
exodus = true
[]
(test/tests/meshgenerators/file_mesh_generator/exodus_file_mesh_with_id.i)
[Mesh]
[material_id_mesh]
type = FileMeshGenerator
file = mesh_with_material_id.e
exodus_extra_element_integers = material_id
[]
[]
[AuxVariables]
[material_id]
family = MONOMIAL
order = CONSTANT
[]
[]
[AuxKernels]
[set_material_id]
type = ElemExtraIDAux
variable = material_id
extra_id_name = material_id
[]
[]
[Problem]
kernel_coverage_check = false
solve = false
[]
[Executioner]
type = Steady
[]
[Outputs]
exodus = true
[]
(modules/navier_stokes/test/tests/postprocessors/conservation_INSFV.i)
mu=1.1
rho=1
advected_interp_method='average'
velocity_interp_method='average'
[GlobalParams]
two_term_boundary_expansion = true
[]
[Mesh]
inactive = 'mesh internal_boundary_bot internal_boundary_top'
[mesh]
type = CartesianMeshGenerator
dim = 2
dx = '1'
dy = '1 1 1'
ix = '5'
iy = '5 5 5'
subdomain_id = '1
2
3'
[]
[internal_boundary_bot]
type = SideSetsBetweenSubdomainsGenerator
input = mesh
new_boundary = 'internal_bot'
primary_block = 1
paired_block = 2
[]
[internal_boundary_top]
type = SideSetsBetweenSubdomainsGenerator
input = internal_boundary_bot
new_boundary = 'internal_top'
primary_block = 2
paired_block = 3
[]
[diverging_mesh]
type = FileMeshGenerator
file = 'expansion_quad.e'
[]
[]
[Problem]
fv_bcs_integrity_check = true
[]
[Variables]
[u]
type = INSFVVelocityVariable
initial_condition = 0
[]
[v]
type = INSFVVelocityVariable
initial_condition = 1
[]
[pressure]
type = INSFVPressureVariable
[]
[temperature]
type = INSFVEnergyVariable
[]
[]
[AuxVariables]
[advected_density]
order = CONSTANT
family = MONOMIAL
fv = true
initial_condition = ${rho}
[]
[]
[FVKernels]
[mass]
type = INSFVMassAdvection
variable = pressure
advected_interp_method = ${advected_interp_method}
velocity_interp_method = ${velocity_interp_method}
vel = 'velocity'
pressure = pressure
u = u
v = v
mu = ${mu}
rho = ${rho}
[]
[u_advection]
type = INSFVMomentumAdvection
variable = u
advected_quantity = 'rhou'
vel = 'velocity'
advected_interp_method = ${advected_interp_method}
velocity_interp_method = ${velocity_interp_method}
pressure = pressure
u = u
v = v
mu = ${mu}
rho = ${rho}
[]
[u_viscosity]
type = FVDiffusion
variable = u
coeff = ${mu}
force_boundary_execution = true
[]
[u_pressure]
type = INSFVMomentumPressure
variable = u
momentum_component = 'x'
pressure = pressure
[]
[v_advection]
type = INSFVMomentumAdvection
variable = v
advected_quantity = 'rhov'
vel = 'velocity'
advected_interp_method = ${advected_interp_method}
velocity_interp_method = ${velocity_interp_method}
pressure = pressure
u = u
v = v
mu = ${mu}
rho = ${rho}
[]
[v_viscosity]
type = FVDiffusion
variable = v
coeff = ${mu}
force_boundary_execution = true
[]
[v_pressure]
type = INSFVMomentumPressure
variable = v
momentum_component = 'y'
pressure = pressure
[]
[temp_advection]
type = INSFVEnergyAdvection
vel = 'velocity'
variable = temperature
advected_interp_method = ${advected_interp_method}
velocity_interp_method = ${velocity_interp_method}
pressure = pressure
u = u
v = v
mu = ${mu}
rho = ${rho}
[]
[temp_source]
type = FVBodyForce
variable = temperature
function = 10
block = 1
[]
[]
[FVBCs]
inactive = 'noslip-u noslip-v'
[inlet-u]
type = INSFVInletVelocityBC
boundary = 'bottom'
variable = u
function = 0
[]
[inlet-v]
type = INSFVInletVelocityBC
boundary = 'bottom'
variable = v
function = 1
[]
[noslip-u]
type = INSFVNoSlipWallBC
boundary = 'right'
variable = u
function = 0
[]
[noslip-v]
type = INSFVNoSlipWallBC
boundary = 'right'
variable = v
function = 0
[]
[free-slip-u]
type = INSFVNaturalFreeSlipBC
boundary = 'right'
variable = u
[]
[free-slip-v]
type = INSFVNaturalFreeSlipBC
boundary = 'right'
variable = v
[]
[axis-u]
type = INSFVSymmetryVelocityBC
boundary = 'left'
variable = u
u = u
v = v
mu = ${mu}
momentum_component = x
[]
[axis-v]
type = INSFVSymmetryVelocityBC
boundary = 'left'
variable = v
u = u
v = v
mu = ${mu}
momentum_component = y
[]
[axis-p]
type = INSFVSymmetryPressureBC
boundary = 'left'
variable = pressure
[]
[outlet_p]
type = INSFVOutletPressureBC
boundary = 'top'
variable = pressure
function = 0
[]
[inlet_temp]
type = FVNeumannBC
boundary = 'bottom'
variable = temperature
value = 300
[]
[]
[Materials]
[ins_fv]
type = INSFVMaterial
u = 'u'
v = 'v'
pressure = 'pressure'
temperature = 'temperature'
rho = ${rho}
[]
[advected_material_property]
type = ADGenericConstantMaterial
prop_names = 'advected_rho cp'
prop_values ='${rho} 1'
[]
[]
[Executioner]
type = Steady
solve_type = 'NEWTON'
petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_pc_type -sub_pc_factor_shift_type'
petsc_options_value = 'asm 200 lu NONZERO'
line_search = 'none'
nl_rel_tol = 1e-12
[]
[Postprocessors]
[inlet_mass_variable]
type = VolumetricFlowRate
boundary = bottom
vel_x = u
vel_y = v
advected_variable = advected_density
fv = true
advected_interp_method = ${advected_interp_method}
[]
[inlet_mass_constant]
type = VolumetricFlowRate
boundary = bottom
vel_x = u
vel_y = v
advected_variable = ${rho}
fv = true
advected_interp_method = ${advected_interp_method}
[]
[inlet_mass_matprop]
type = VolumetricFlowRate
boundary = bottom
vel_x = u
vel_y = v
advected_mat_prop = 'advected_rho'
fv = true
[]
[mid1_mass]
type = InternalVolumetricFlowRate
boundary = internal_bot
vel_x = u
vel_y = v
fv = true
advected_interp_method = ${advected_interp_method}
[]
[mid2_mass]
type = InternalVolumetricFlowRate
boundary = internal_top
vel_x = u
vel_y = v
fv = true
advected_interp_method = ${advected_interp_method}
[]
[outlet_mass]
type = VolumetricFlowRate
boundary = top
vel_x = u
vel_y = v
fv = true
advected_interp_method = ${advected_interp_method}
[]
[inlet_momentum_x]
type = VolumetricFlowRate
boundary = bottom
vel_x = u
vel_y = v
advected_variable = u
fv = true
advected_interp_method = ${advected_interp_method}
[]
[mid1_momentum_x]
type = InternalVolumetricFlowRate
boundary = internal_bot
vel_x = u
vel_y = v
advected_variable = u
fv = true
advected_interp_method = ${advected_interp_method}
[]
[mid2_momentum_x]
type = InternalVolumetricFlowRate
boundary = internal_top
vel_x = u
vel_y = v
advected_variable = u
fv = true
advected_interp_method = ${advected_interp_method}
[]
[outlet_momentum_x]
type = VolumetricFlowRate
boundary = top
vel_x = u
vel_y = v
advected_variable = u
fv = true
advected_interp_method = ${advected_interp_method}
[]
[inlet_momentum_y]
type = VolumetricFlowRate
boundary = bottom
vel_x = u
vel_y = v
advected_variable = v
fv = true
advected_interp_method = ${advected_interp_method}
[]
[mid1_momentum_y]
type = InternalVolumetricFlowRate
boundary = internal_bot
vel_x = u
vel_y = v
advected_variable = v
fv = true
advected_interp_method = ${advected_interp_method}
[]
[mid2_momentum_y]
type = InternalVolumetricFlowRate
boundary = internal_top
vel_x = u
vel_y = v
advected_variable = v
fv = true
advected_interp_method = ${advected_interp_method}
[]
[outlet_momentum_y]
type = VolumetricFlowRate
boundary = top
vel_x = u
vel_y = v
advected_variable = v
fv = true
advected_interp_method = ${advected_interp_method}
[]
[inlet_advected_energy]
type = VolumetricFlowRate
boundary = bottom
vel_x = u
vel_y = v
advected_mat_prop = 'rho_cp_temp'
fv = true
[]
[mid1_advected_energy]
type = InternalVolumetricFlowRate
boundary = internal_bot
vel_x = u
vel_y = v
advected_mat_prop = 'rho_cp_temp'
fv = true
advected_interp_method = ${advected_interp_method}
[]
[mid2_advected_energy]
type = InternalVolumetricFlowRate
boundary = internal_top
vel_x = u
vel_y = v
advected_mat_prop = 'rho_cp_temp'
fv = true
advected_interp_method = ${advected_interp_method}
[]
[outlet_advected_energy]
type = VolumetricFlowRate
boundary = top
vel_x = u
vel_y = v
advected_mat_prop = 'rho_cp_temp'
fv = true
[]
[]
[Outputs]
exodus = false
csv = true
inactive = 'console_mass console_momentum_x console_momentum_y console_energy'
[console_mass]
type = Console
start_step = 1
show = 'inlet_mass_variable inlet_mass_constant inlet_mass_matprop mid1_mass mid2_mass outlet_mass'
[]
[console_momentum_x]
type = Console
start_step = 1
show = 'inlet_momentum_x mid1_momentum_x mid2_momentum_x outlet_momentum_x'
[]
[console_momentum_y]
type = Console
start_step = 1
show = 'inlet_momentum_y mid1_momentum_y mid2_momentum_y outlet_momentum_y'
[]
[console_energy]
type = Console
start_step = 1
show = 'inlet_advected_energy mid1_advected_energy mid2_advected_energy outlet_advected_energy'
[]
[]
(modules/heat_conduction/test/tests/meshed_gap_thermal_contact/meshed_annulus_thermal_contact.i)
[Mesh]
[fmesh]
type = FileMeshGenerator
file = meshed_annulus.e
[]
[rename]
type = RenameBlockGenerator
input = fmesh
old_block_id = '1 2 3'
new_block_id = '1 4 3'
[]
[]
[Variables]
[./temp]
block = '1 3'
initial_condition = 1.0
[../]
[]
[Kernels]
[./hc]
type = HeatConduction
variable = temp
block = '1 3'
[../]
[./source]
type = HeatSource
variable = temp
block = 3
value = 10.0
[../]
[]
[BCs]
[./outside]
type = DirichletBC
variable = temp
boundary = 1
value = 1.0
[../]
[]
[ThermalContact]
[./gap_conductivity]
type = GapHeatTransfer
variable = temp
primary = 2
secondary = 3
emissivity_primary = 0
emissivity_secondary = 0
gap_conductivity = 0.5
[../]
[]
[Materials]
[./hcm]
type = HeatConductionMaterial
block = '1 3'
temp = temp
thermal_conductivity = 1
[../]
[]
[Problem]
type = FEProblem
kernel_coverage_check = false
material_coverage_check = false
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
[./out]
type = Exodus
[../]
[]
(test/tests/mortar/continuity-2d-non-conforming/sequencing-stateful-soln-continuity.i)
[Mesh]
second_order = true
[file]
type = FileMeshGenerator
file = nodal_normals_test_offset_nonmatching_gap.e
[]
[./primary]
input = file
type = LowerDBlockFromSidesetGenerator
sidesets = '2'
new_block_id = '20'
[../]
[./secondary]
input = primary
type = LowerDBlockFromSidesetGenerator
sidesets = '1'
new_block_id = '10'
[../]
[]
[Variables]
[./T]
block = '1 2'
order = SECOND
[../]
[./lambda]
block = '10'
[../]
[]
[AuxVariables]
[ssm]
order = CONSTANT
family = MONOMIAL
block = '1 2'
[]
[]
[BCs]
[./neumann]
type = FunctionGradientNeumannBC
exact_solution = exact_soln
variable = T
boundary = '3 4 5 6 7 8'
[../]
[]
[Kernels]
[./conduction]
type = Diffusion
variable = T
block = '1 2'
[../]
[./sink]
type = Reaction
variable = T
block = '1 2'
[../]
[./forcing_function]
type = BodyForce
variable = T
function = forcing_function
block = '1 2'
[../]
[]
[AuxKernels]
[ssm]
type = MaterialRealAux
variable = ssm
property = diffusivity
block = '1 2'
[]
[]
[Materials]
[./ssm]
type = SpatialStatefulMaterial
block = '1 2'
[../]
[]
[Functions]
[./forcing_function]
type = ParsedFunction
value = '-4 + x^2 + y^2'
[../]
[./exact_soln]
type = ParsedFunction
value = 'x^2 + y^2'
[../]
[]
[Debug]
show_var_residual_norms = 1
[]
[Constraints]
[./mortar]
type = EqualValueConstraint
primary_boundary = 2
secondary_boundary = 1
primary_subdomain = 20
secondary_subdomain = 10
variable = lambda
secondary_variable = T
[../]
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Executioner]
solve_type = NEWTON
type = Steady
nl_abs_tol = 1e-12
petsc_options_iname = '-pc_type -snes_linesearch_type -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu basic NONZERO 1e-15'
num_grids = 2
[]
[Outputs]
exodus = true
[]
[Adaptivity]
steps = 1
marker = uniform
[Markers]
[uniform]
type = UniformMarker
mark = refine
[]
[]
[]
(test/tests/mesh_modifiers/add_all_side_sets/simple.i)
[Mesh]
[file]
type = FileMeshGenerator
file = twoblocks.e
[]
[block_1]
type = AllSideSetsByNormalsGenerator
input = file
[]
[]
# This input file is intended to be run with the "--mesh-only" option so
# no other sections are required
(test/tests/meshgenerators/sidesets_from_normals_generator/sidesets_cylinder_normals.i)
[Mesh]
[./fmg]
type = FileMeshGenerator
file = cylinder.e
#parallel_type = replicated
[]
[./sidesets]
type = SideSetsFromNormalsGenerator
input = fmg
normals = '0 0 1
0 1 0
0 0 -1'
fixed_normal = false
new_boundary = 'top side bottom'
[]
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./bottom]
type = DirichletBC
variable = u
boundary = bottom
value = 0
[../]
[./top]
type = DirichletBC
variable = u
boundary = top
value = 1
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(test/tests/mesh_modifiers/add_side_sets/cylinder_normals_fixed.i)
[Mesh]
[file]
type = FileMeshGenerator
file = cylinder.e
[]
# Mesh Modifiers
[add_side_sets]
type = SideSetsFromNormalsGenerator
input = file
normals = '0 1 0
0 -1 0'
new_boundary = 'front back'
# This parameter makes it so that we won't
# adjust the normal for each adjacent element.
fixed_normal = true
variance = 0.5
[]
[]
[Variables]
[u]
[]
[]
[Kernels]
[diff]
type = Diffusion
variable = u
[]
[]
[BCs]
[front]
type = DirichletBC
variable = u
boundary = front
value = 0
[]
[back]
type = DirichletBC
variable = u
boundary = back
value = 1
[]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(modules/heat_conduction/test/tests/gap_heat_transfer_mortar/gap_heat_transfer_mortar_displaced.i)
[Mesh]
displacements = 'disp_x disp_y'
[file]
type = FileMeshGenerator
file = 2blk-gap.e
[]
[secondary]
type = LowerDBlockFromSidesetGenerator
sidesets = '101'
new_block_id = 10001
new_block_name = 'secondary_lower'
input = file
[]
[primary]
type = LowerDBlockFromSidesetGenerator
sidesets = '100'
new_block_id = 10000
new_block_name = 'primary_lower'
input = secondary
[]
[]
[Problem]
kernel_coverage_check = false
material_coverage_check = false
[]
[Variables]
[./temp]
order = FIRST
family = LAGRANGE
block = '1 2'
[../]
[./disp_x]
order = FIRST
family = LAGRANGE
block = '1 2'
[../]
[./disp_y]
order = FIRST
family = LAGRANGE
block = '1 2'
[../]
[./lm]
order = FIRST
family = LAGRANGE
block = 'secondary_lower'
[../]
[]
[Materials]
[./left]
type = ADHeatConductionMaterial
block = 1
thermal_conductivity = 1000
specific_heat = 1
[../]
[./right]
type = ADHeatConductionMaterial
block = 2
thermal_conductivity = 500
specific_heat = 1
[../]
[]
[Kernels]
[./hc_displaced_block]
type = ADHeatConduction
variable = temp
use_displaced_mesh = true
block = '1'
[../]
[./hc_undisplaced_block]
type = ADHeatConduction
variable = temp
use_displaced_mesh = false
block = '2'
[../]
[disp_x]
type = Diffusion
variable = disp_x
block = '1 2'
[]
[disp_y]
type = Diffusion
variable = disp_y
block = '1 2'
[]
[]
[Constraints]
[./ced]
type = GapConductanceConstraint
variable = lm
secondary_variable = temp
k = 100
use_displaced_mesh = true
primary_boundary = 100
primary_subdomain = 10000
secondary_boundary = 101
secondary_subdomain = 10001
displacements = 'disp_x disp_y'
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = temp
boundary = 'left'
value = 1
[../]
[./right]
type = DirichletBC
variable = temp
boundary = 'right'
value = 0
[../]
[left_disp_x]
type = DirichletBC
preset = false
variable = disp_x
boundary = 'left'
value = .1
[]
[right_disp_x]
type = DirichletBC
preset = false
variable = disp_x
boundary = 'right'
value = 0
[]
[bottom_disp_y]
type = DirichletBC
preset = false
variable = disp_y
boundary = 'bottom'
value = 0
[]
[]
[Preconditioning]
[./fmp]
type = SMP
full = true
solve_type = 'NEWTON'
[../]
[]
[Executioner]
type = Steady
nl_rel_tol = 1e-11
[]
[Outputs]
exodus = true
show = 'temp disp_x disp_y'
[dof]
type = DOFMap
execute_on = 'initial'
[]
[]
(modules/tensor_mechanics/examples/coal_mining/fine.i)
# Strata deformation and fracturing around a coal mine - 3D model
#
# A "half model" is used. The mine is 400m deep and
# just the roof is studied (-400<=z<=0). The mining panel
# sits between 0<=x<=150, and 0<=y<=1000, so this simulates
# a coal panel that is 300m wide and 1000m long. The outer boundaries
# are 1km from the excavation boundaries.
#
# Time is meaningless in this example
# as quasi-static solutions are sought at each timestep, but
# the number of timesteps controls the resolution of the
# process.
#
# The boundary conditions for this simulation are:
# - disp_x = 0 at x=0 and x=1150
# - disp_y = 0 at y=-1000 and y=1000
# - disp_z = 0 at z=-400, but there is a time-dependent
# Young's modulus that simulates excavation
# - wc_x = 0 at y=-1000 and y=1000
# - wc_y = 0 at x=0 and x=1150
# That is, rollers on the sides, free at top,
# and prescribed at bottom in the unexcavated portion.
#
# The small strain formulation is used.
#
# All stresses are measured in MPa. The initial stress is consistent with
# the weight force from density 2500 kg/m^3, ie, stress_zz = 0.025*z MPa
# where gravity = 10 m.s^-2 = 1E-5 MPa m^2/kg. The maximum and minimum
# principal horizontal stresses are assumed to be equal to 0.8*stress_zz.
#
# Material properties:
# Young's modulus = 8 GPa
# Poisson's ratio = 0.25
# Cosserat layer thickness = 1 m
# Cosserat-joint normal stiffness = large
# Cosserat-joint shear stiffness = 1 GPa
# MC cohesion = 3 MPa
# MC friction angle = 37 deg
# MC dilation angle = 8 deg
# MC tensile strength = 1 MPa
# MC compressive strength = 100 MPa
# WeakPlane cohesion = 0.1 MPa
# WeakPlane friction angle = 30 deg
# WeakPlane dilation angle = 10 deg
# WeakPlane tensile strength = 0.1 MPa
# WeakPlane compressive strength = 100 MPa softening to 1 MPa at strain = 1
#
[Mesh]
[file]
type = FileMeshGenerator
file = mesh/fine.e
[]
[./xmin]
input = file
type = SideSetsAroundSubdomainGenerator
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
new_boundary = xmin
normal = '-1 0 0'
[../]
[./xmax]
input = xmin
type = SideSetsAroundSubdomainGenerator
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
new_boundary = xmax
normal = '1 0 0'
[../]
[./ymin]
input = xmax
type = SideSetsAroundSubdomainGenerator
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
new_boundary = ymin
normal = '0 -1 0'
[../]
[./ymax]
input = ymin
type = SideSetsAroundSubdomainGenerator
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
new_boundary = ymax
normal = '0 1 0'
[../]
[./zmax]
input = ymax
type = SideSetsAroundSubdomainGenerator
block = 30
new_boundary = zmax
normal = '0 0 1'
[../]
[./zmin]
input = zmax
type = SideSetsAroundSubdomainGenerator
block = 2
new_boundary = zmin
normal = '0 0 -1'
[../]
[./excav]
type = SubdomainBoundingBoxGenerator
input = zmin
block_id = 1
bottom_left = '0 0 -400'
top_right = '150 1000 -397'
[../]
[./roof]
type = SideSetsAroundSubdomainGenerator
block = 1
input = excav
new_boundary = roof
normal = '0 0 1'
[../]
[]
[GlobalParams]
perform_finite_strain_rotations = false
displacements = 'disp_x disp_y disp_z'
Cosserat_rotations = 'wc_x wc_y wc_z'
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[./disp_z]
[../]
[./wc_x]
[../]
[./wc_y]
[../]
[]
[Kernels]
[./cx_elastic]
type = CosseratStressDivergenceTensors
use_displaced_mesh = false
variable = disp_x
component = 0
[../]
[./cy_elastic]
type = CosseratStressDivergenceTensors
use_displaced_mesh = false
variable = disp_y
component = 1
[../]
[./cz_elastic]
type = CosseratStressDivergenceTensors
use_displaced_mesh = false
variable = disp_z
component = 2
[../]
[./x_couple]
type = StressDivergenceTensors
use_displaced_mesh = false
variable = wc_x
displacements = 'wc_x wc_y wc_z'
component = 0
base_name = couple
[../]
[./y_couple]
type = StressDivergenceTensors
use_displaced_mesh = false
variable = wc_y
displacements = 'wc_x wc_y wc_z'
component = 1
base_name = couple
[../]
[./x_moment]
type = MomentBalancing
use_displaced_mesh = false
variable = wc_x
component = 0
[../]
[./y_moment]
type = MomentBalancing
use_displaced_mesh = false
variable = wc_y
component = 1
[../]
[./gravity]
type = Gravity
use_displaced_mesh = false
variable = disp_z
value = -10E-6 # remember this is in MPa
[../]
[]
[AuxVariables]
[./wc_z]
[../]
[./stress_xx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xz]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yz]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zz]
order = CONSTANT
family = MONOMIAL
[../]
[./mc_shear]
order = CONSTANT
family = MONOMIAL
[../]
[./mc_tensile]
order = CONSTANT
family = MONOMIAL
[../]
[./wp_shear]
order = CONSTANT
family = MONOMIAL
[../]
[./wp_tensile]
order = CONSTANT
family = MONOMIAL
[../]
[./wp_shear_f]
order = CONSTANT
family = MONOMIAL
[../]
[./wp_tensile_f]
order = CONSTANT
family = MONOMIAL
[../]
[./mc_shear_f]
order = CONSTANT
family = MONOMIAL
[../]
[./mc_tensile_f]
order = CONSTANT
family = MONOMIAL
[../]
[]
[AuxKernels]
[./stress_xx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xx
index_i = 0
index_j = 0
[../]
[./stress_xy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xy
index_i = 0
index_j = 1
[../]
[./stress_xz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xz
index_i = 0
index_j = 2
[../]
[./stress_yx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yx
index_i = 1
index_j = 0
[../]
[./stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
[../]
[./stress_yz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yz
index_i = 1
index_j = 2
[../]
[./stress_zx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zx
index_i = 2
index_j = 0
[../]
[./stress_zy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zy
index_i = 2
index_j = 1
[../]
[./stress_zz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zz
index_i = 2
index_j = 2
[../]
[./mc_shear]
type = MaterialStdVectorAux
index = 0
property = mc_plastic_internal_parameter
variable = mc_shear
[../]
[./mc_tensile]
type = MaterialStdVectorAux
index = 1
property = mc_plastic_internal_parameter
variable = mc_tensile
[../]
[./wp_shear]
type = MaterialStdVectorAux
index = 0
property = wp_plastic_internal_parameter
variable = wp_shear
[../]
[./wp_tensile]
type = MaterialStdVectorAux
index = 1
property = wp_plastic_internal_parameter
variable = wp_tensile
[../]
[./mc_shear_f]
type = MaterialStdVectorAux
index = 6
property = mc_plastic_yield_function
variable = mc_shear_f
[../]
[./mc_tensile_f]
type = MaterialStdVectorAux
index = 0
property = mc_plastic_yield_function
variable = mc_tensile_f
[../]
[./wp_shear_f]
type = MaterialStdVectorAux
index = 0
property = wp_plastic_yield_function
variable = wp_shear_f
[../]
[./wp_tensile_f]
type = MaterialStdVectorAux
index = 1
property = wp_plastic_yield_function
variable = wp_tensile_f
[../]
[]
[BCs]
[./no_x]
type = DirichletBC
variable = disp_x
boundary = 'xmin xmax'
value = 0.0
[../]
[./no_y]
type = DirichletBC
variable = disp_y
boundary = 'ymin ymax'
value = 0.0
[../]
[./no_z]
type = DirichletBC
variable = disp_z
boundary = zmin
value = 0.0
[../]
[./no_wc_x]
type = DirichletBC
variable = wc_x
boundary = 'ymin ymax'
value = 0.0
[../]
[./no_wc_y]
type = DirichletBC
variable = wc_y
boundary = 'xmin xmax'
value = 0.0
[../]
[./roof]
type = StickyBC
variable = disp_z
min_value = -3.0
boundary = roof
[../]
[]
[Functions]
[./ini_xx]
type = ParsedFunction
value = '0.8*2500*10E-6*z'
[../]
[./ini_zz]
type = ParsedFunction
value = '2500*10E-6*z'
[../]
[./excav_sideways]
type = ParsedFunction
vars = 'end_t ymin ymax minval maxval slope'
vals = '100.0 0 1000.0 1E-9 1 10'
# excavation face at ymin+(ymax-ymin)*min(t/end_t,1)
# slope is the distance over which the modulus reduces from maxval to minval
value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),minval,if(y<ymin+(ymax-ymin)*min(t/end_t,1)+slope,minval+(maxval-minval)*(y-(ymin+(ymax-ymin)*min(t/end_t,1)))/slope,maxval))'
[../]
[./density_sideways]
type = ParsedFunction
vars = 'end_t ymin ymax minval maxval'
vals = '100.0 0 1000.0 0 2500'
value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),minval,maxval)'
[../]
[]
[UserObjects]
[./mc_coh_strong_harden]
type = TensorMechanicsHardeningExponential
value_0 = 2.99 # MPa
value_residual = 3.01 # MPa
rate = 1.0
[../]
[./mc_fric]
type = TensorMechanicsHardeningConstant
value = 0.65 # 37deg
[../]
[./mc_dil]
type = TensorMechanicsHardeningConstant
value = 0.15 # 8deg
[../]
[./mc_tensile_str_strong_harden]
type = TensorMechanicsHardeningExponential
value_0 = 1.0 # MPa
value_residual = 1.0 # MPa
rate = 1.0
[../]
[./mc_compressive_str]
type = TensorMechanicsHardeningCubic
value_0 = 100 # Large!
value_residual = 100
internal_limit = 0.1
[../]
[./wp_coh_harden]
type = TensorMechanicsHardeningCubic
value_0 = 0.1
value_residual = 0.1
internal_limit = 10
[../]
[./wp_tan_fric]
type = TensorMechanicsHardeningConstant
value = 0.36 # 20deg
[../]
[./wp_tan_dil]
type = TensorMechanicsHardeningConstant
value = 0.18 # 10deg
[../]
[./wp_tensile_str_harden]
type = TensorMechanicsHardeningCubic
value_0 = 0.1
value_residual = 0.1
internal_limit = 10
[../]
[./wp_compressive_str_soften]
type = TensorMechanicsHardeningCubic
value_0 = 100
value_residual = 1
internal_limit = 1.0
[../]
[]
[Materials]
[./elasticity_tensor_0]
type = ComputeLayeredCosseratElasticityTensor
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
young = 8E3 # MPa
poisson = 0.25
layer_thickness = 1.0
joint_normal_stiffness = 1E9 # huge
joint_shear_stiffness = 1E3 # MPa
[../]
[./elasticity_tensor_1]
type = ComputeLayeredCosseratElasticityTensor
block = 1
young = 8E3 # MPa
poisson = 0.25
layer_thickness = 1.0
joint_normal_stiffness = 1E9 # huge
joint_shear_stiffness = 1E3 # MPa
elasticity_tensor_prefactor = excav_sideways
[../]
[./strain]
type = ComputeCosseratIncrementalSmallStrain
eigenstrain_names = ini_stress
[../]
[./ini_stress]
type = ComputeEigenstrainFromInitialStress
eigenstrain_name = ini_stress
initial_stress = 'ini_xx 0 0 0 ini_xx 0 0 0 ini_zz'
[../]
[./stress_0]
type = ComputeMultipleInelasticCosseratStress
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
inelastic_models = 'mc wp'
cycle_models = true
relative_tolerance = 2.0
absolute_tolerance = 1E6
max_iterations = 1
tangent_operator = nonlinear
perform_finite_strain_rotations = false
[../]
[./stress_1]
type = ComputeMultipleInelasticCosseratStress
block = 1
inelastic_models = ''
relative_tolerance = 2.0
absolute_tolerance = 1E6
max_iterations = 1
tangent_operator = nonlinear
perform_finite_strain_rotations = false
[../]
[./mc]
type = CappedMohrCoulombCosseratStressUpdate
warn_about_precision_loss = false
host_youngs_modulus = 8E3
host_poissons_ratio = 0.25
base_name = mc
tensile_strength = mc_tensile_str_strong_harden
compressive_strength = mc_compressive_str
cohesion = mc_coh_strong_harden
friction_angle = mc_fric
dilation_angle = mc_dil
max_NR_iterations = 100000
smoothing_tol = 0.1 # MPa # Must be linked to cohesion
yield_function_tol = 1E-9 # MPa. this is essentially the lowest possible without lots of precision loss
perfect_guess = true
min_step_size = 1.0
[../]
[./wp]
type = CappedWeakPlaneCosseratStressUpdate
warn_about_precision_loss = false
base_name = wp
cohesion = wp_coh_harden
tan_friction_angle = wp_tan_fric
tan_dilation_angle = wp_tan_dil
tensile_strength = wp_tensile_str_harden
compressive_strength = wp_compressive_str_soften
max_NR_iterations = 10000
tip_smoother = 0.1
smoothing_tol = 0.1 # MPa # Note, this must be tied to cohesion, otherwise get no possible return at cone apex
yield_function_tol = 1E-11 # MPa. this is essentially the lowest possible without lots of precision loss
perfect_guess = true
min_step_size = 1.0E-3
[../]
[./density_0]
type = GenericConstantMaterial
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
prop_names = density
prop_values = 2500
[../]
[./density_1]
type = GenericFunctionMaterial
block = 1
prop_names = density
prop_values = density_sideways
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[]
[]
[Postprocessors]
[./min_roof_disp]
type = NodalExtremeValue
boundary = roof
value_type = min
variable = disp_z
[../]
[./min_surface_disp]
type = NodalExtremeValue
boundary = zmax
value_type = min
variable = disp_z
[../]
[]
[Executioner]
type = Transient
solve_type = 'NEWTON'
petsc_options = '-snes_converged_reason'
petsc_options_iname = '-pc_type -ksp_type -ksp_gmres_restart'
petsc_options_value = ' bjacobi gmres 200'
line_search = bt
nl_abs_tol = 1e-3
nl_rel_tol = 1e-5
l_max_its = 30
nl_max_its = 1000
start_time = 0.0
dt = 0.5
end_time = 100.0
[]
[Outputs]
interval = 1
print_linear_residuals = false
exodus = true
csv = true
console = true
[]
(test/tests/meshgenerators/transform_generator/rotate_and_scale.i)
[Mesh]
[./fmg]
type = FileMeshGenerator
file = cylinder.e
[]
[./rotate]
type = TransformGenerator
input = fmg
transform = ROTATE
vector_value = '0 90 0'
[]
[./scale]
type = TransformGenerator
input = rotate
transform = SCALE
vector_value ='1e2 1e2 1e2'
[]
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = 1
value = 0
[../]
[./right]
type = DirichletBC
variable = u
boundary = 2
value = 1
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
[]
[Outputs]
exodus = true
[]
(modules/heat_conduction/test/tests/gap_heat_transfer_htonly/planar_xz.i)
# 1-D Gap Heat Transfer Test without mechanics
#
# This test exercises 1-D gap heat transfer for a constant conductivity gap.
#
# The mesh consists of two element blocks in the x-z plane. Each element block
# is a square. They sit next to one another with a unit between them.
#
# The conductivity of both blocks is set very large to achieve a uniform temperature
# across each block. The temperature of the far bottom boundary
# is ramped from 100 to 200 over one time unit. The temperature of the far top
# boundary is held fixed at 100.
#
# A simple analytical solution is possible for the heat flux between the blocks:
#
# Flux = (T_left - T_right) * (gapK/gap_width)
#
# The gap conductivity is specified as 1, thus
#
# gapK(Tavg) = 1.0*Tavg
#
# The heat flux across the gap at time = 1 is then:
#
# Flux = 100 * (1.0/1.0) = 100
#
# For comparison, see results from the flux post processors. These results
# are the same as for the unit 1-D gap heat transfer between two unit cubes.
[Mesh]
[file]
type = FileMeshGenerator
file = simple_2D.e
[]
[./rotate]
type = TransformGenerator
transform = ROTATE
vector_value = '0 90 0'
input = file
[../]
[]
[Functions]
[./temp]
type = PiecewiseLinear
x = '0 1 2'
y = '100 200 200'
[../]
[]
[ThermalContact]
[./thermal_contact]
type = GapHeatTransfer
variable = temp
primary = 3
secondary = 2
emissivity_primary = 0
emissivity_secondary = 0
[../]
[]
[Variables]
[./temp]
order = FIRST
family = LAGRANGE
initial_condition = 100
[../]
[]
[AuxVariables]
[./gap_cond]
order = CONSTANT
family = MONOMIAL
[../]
[]
[Kernels]
[./heat]
type = HeatConduction
variable = temp
[../]
[]
[BCs]
[./temp_far_bottom]
type = FunctionDirichletBC
boundary = 1
variable = temp
function = temp
[../]
[./temp_far_top]
type = DirichletBC
boundary = 4
variable = temp
value = 100
[../]
[]
[AuxKernels]
[./conductance]
type = MaterialRealAux
property = gap_conductance
variable = gap_cond
boundary = 2
[../]
[]
[Materials]
[./heat1]
type = HeatConductionMaterial
block = '1 2'
specific_heat = 1.0
thermal_conductivity = 100000000.0
[../]
[./density]
type = GenericConstantMaterial
block = '1 2'
prop_names = 'density'
prop_values = '1.0'
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
petsc_options_value = '201 hypre boomeramg 4'
line_search = 'none'
nl_rel_tol = 1e-12
l_tol = 1e-3
l_max_its = 100
dt = 1e-1
end_time = 1.0
[]
[Postprocessors]
[./temp_bottom]
type = SideAverageValue
boundary = 2
variable = temp
execute_on = 'initial timestep_end'
[../]
[./temp_top]
type = SideAverageValue
boundary = 3
variable = temp
execute_on = 'initial timestep_end'
[../]
[./flux_bottom]
type = SideDiffusiveFluxIntegral
variable = temp
boundary = 2
diffusivity = thermal_conductivity
execute_on = 'initial timestep_end'
[../]
[./flux_top]
type = SideDiffusiveFluxIntegral
variable = temp
boundary = 3
diffusivity = thermal_conductivity
execute_on = 'initial timestep_end'
[../]
[]
[Outputs]
exodus = true
[]
(test/tests/meshgenerators/mesh_extruder_generator/extrude_remap_layer2.i)
[Mesh]
[./fmg]
type = FileMeshGenerator
file = multiblock.e
[]
[./extrude]
type = MeshExtruderGenerator
input = fmg
num_layers = 6
extrusion_vector = '0 0 2'
bottom_sideset = 'new_bottom'
top_sideset = 'new_top'
# Remap layers
existing_subdomains = '1 2 5'
layers = '1 3 5'
new_ids = '10 12 15' # Repeat this remapping for each layer
[]
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./bottom]
type = DirichletBC
variable = u
boundary = 'new_bottom'
value = 0
[../]
[./top]
type = DirichletBC
variable = u
boundary = 'new_top'
value = 1
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
[]
[Outputs]
exodus = true
[]
(test/tests/mesh_modifiers/break_mesh_by_blocks/2D/TestBreakMesh_2D_polycrystal.i)
[Mesh]
[file]
type = FileMeshGenerator
file = poly.msh
[]
[breakmesh]
type = BreakMeshByBlockGenerator
input = file
split_interface = false
[]
[]
(test/tests/mesh_modifiers/sidesets_around_subdomain/around.i)
[Mesh]
[file]
type = FileMeshGenerator
file = twoblocks.e
[]
[block_1]
type = SideSetsAroundSubdomainGenerator
input = file
block = 'left'
new_boundary = 'hull_1'
[]
[block_2]
type = SideSetsAroundSubdomainGenerator
input = block_1
block = 'right'
new_boundary = 'hull_2'
[]
[]
# This input file is intended to be run with the "--mesh-only" option so
# no other sections are required
(test/tests/mortar/continuity-2d-conforming/conforming-2nd-order.i)
[Mesh]
[file]
type = FileMeshGenerator
file = 2blk-conf-2nd.e
[]
[secondary]
input = file
type = LowerDBlockFromSidesetGenerator
sidesets = '101'
new_block_id = '10001'
new_block_name = 'secondary_lower'
[]
[primary]
input = secondary
type = LowerDBlockFromSidesetGenerator
sidesets = '100'
new_block_id = '10000'
new_block_name = 'primary_lower'
[]
[]
[Problem]
kernel_coverage_check = false
[]
[Functions]
[./exact_sln]
type = ParsedFunction
value = x*x+y*y
[../]
[./ffn]
type = ParsedFunction
value = -4
[../]
[]
[Variables]
[./u]
order = SECOND
family = LAGRANGE
block = '1 2'
[../]
[./lm]
order = SECOND
family = LAGRANGE
block = secondary_lower
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[./ffn]
type = BodyForce
variable = u
function = ffn
[../]
[]
[Constraints]
[./ced]
type = EqualValueConstraint
variable = lm
secondary_variable = u
primary_boundary = 100
primary_subdomain = 10000
secondary_boundary = 101
secondary_subdomain = 10001
[../]
[]
[BCs]
[./all]
type = FunctionDirichletBC
variable = u
boundary = '1 2 3 4'
function = exact_sln
[../]
[]
[Postprocessors]
[./l2_error]
type = ElementL2Error
variable = u
function = exact_sln
block = '1 2'
execute_on = 'initial timestep_end'
[../]
[]
[Preconditioning]
[./fmp]
type = SMP
full = true
solve_type = 'NEWTON'
[../]
[]
[Executioner]
type = Steady
nl_rel_tol = 1e-14
l_tol = 1e-14
[]
[Outputs]
exodus = true
[]
(modules/navier_stokes/test/tests/ins/jeffery_hamel/wedge_dirichlet.i)
# This input file tests whether we can converge to the semi-analytical
# solution for flow in a 2D wedge.
[GlobalParams]
gravity = '0 0 0'
# Params used by the WedgeFunction for computing the exact solution.
# The value of K is only required for comparing the pressure to the
# exact solution, and is computed by the associated jeffery_hamel.py
# script.
alpha_degrees = 15
Re = 30
K = -9.78221333616
f = f_theta
[]
[Mesh]
[file]
type = FileMeshGenerator
# file = wedge_4x6.e
file = wedge_8x12.e
# file = wedge_16x24.e
# file = wedge_32x48.e
# file = wedge_64x96.e
[]
[./corner_node]
# Pin is on the centerline of the channel on the left-hand side of
# the domain at r=1. If you change the domain, you will need to
# update this pin location for the pressure exact solution to
# work.
type = ExtraNodesetGenerator
new_boundary = pinned_node
coord = '1 0'
input = file
[../]
[]
[Variables]
[./vel_x]
order = SECOND
family = LAGRANGE
[../]
[./vel_y]
order = SECOND
family = LAGRANGE
[../]
[./p]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./mass]
type = INSMass
variable = p
u = vel_x
v = vel_y
pressure = p
[../]
[./x_momentum_time]
type = INSMomentumTimeDerivative
variable = vel_x
[../]
[./x_momentum_space]
type = INSMomentumLaplaceForm
variable = vel_x
u = vel_x
v = vel_y
pressure = p
component = 0
[../]
[./y_momentum_time]
type = INSMomentumTimeDerivative
variable = vel_y
[../]
[./y_momentum_space]
type = INSMomentumLaplaceForm
variable = vel_y
u = vel_x
v = vel_y
pressure = p
component = 1
[../]
[]
[BCs]
[./vel_x_no_slip]
type = DirichletBC
variable = vel_x
boundary = 'top_wall bottom_wall'
value = 0.0
[../]
[./vel_y_no_slip]
type = DirichletBC
variable = vel_y
boundary = 'top_wall bottom_wall'
value = 0.0
[../]
[./vel_x_inlet]
type = FunctionDirichletBC
variable = vel_x
boundary = 'inlet outlet'
function = 'vel_x_exact'
[../]
[./vel_y_inlet]
type = FunctionDirichletBC
variable = vel_y
boundary = 'inlet outlet'
function = 'vel_y_exact'
[../]
[./pressure_pin]
type = DirichletBC
variable = p
boundary = 'pinned_node'
value = 0
[../]
[]
[Materials]
[./const]
type = GenericConstantMaterial
block = 1
prop_names = 'rho mu'
prop_values = '1 1'
[../]
[]
[Preconditioning]
[./SMP_PJFNK]
type = SMP
full = true
solve_type = NEWTON
[../]
[]
[Executioner]
type = Transient
dt = 1.e-2
dtmin = 1.e-2
num_steps = 5
petsc_options_iname = '-ksp_gmres_restart -pc_type -sub_pc_type -sub_pc_factor_levels'
petsc_options_value = '300 bjacobi ilu 4'
line_search = none
nl_rel_tol = 1e-13
nl_abs_tol = 1e-11
nl_max_its = 10
l_tol = 1e-6
l_max_its = 300
[]
[Outputs]
exodus = true
[]
[Functions]
[./f_theta]
# Non-dimensional solution values f(eta), 0 <= eta <= 1 for
# alpha=15 deg, Re=30. Note: this introduces an input file
# ordering dependency: this Function must appear *before* the two
# functions below which use it since apparently proper dependency
# resolution is not done in this scenario.
type = PiecewiseLinear
data_file = 'f.csv'
format = 'columns'
[../]
[./vel_x_exact]
type = WedgeFunction
var_num = 0
mu = 1
rho = 1
[../]
[./vel_y_exact]
type = WedgeFunction
var_num = 1
mu = 1
rho = 1
[../]
[./p_exact]
type = WedgeFunction
var_num = 2
mu = 1
rho = 1
[../]
[]
[Postprocessors]
[./vel_x_L2_error]
type = ElementL2Error
variable = vel_x
function = vel_x_exact
execute_on = 'initial timestep_end'
[../]
[./vel_y_L2_error]
type = ElementL2Error
variable = vel_y
function = vel_y_exact
execute_on = 'initial timestep_end'
[../]
[./p_L2_error]
type = ElementL2Error
variable = p
function = p_exact
execute_on = 'initial timestep_end'
[../]
[]
(test/tests/mesh_modifiers/break_mesh_by_blocks/3D/TestBreakMesh_3D_polycrystal.i)
[Mesh]
[file]
type = FileMeshGenerator
file = poly.msh
[]
[breakmesh]
type = BreakMeshByBlockGenerator
input = file
split_interface = false
[]
[]
(test/tests/mesh_modifiers/mesh_extruder/extruder_tri.i)
[Mesh]
[file]
type = FileMeshGenerator
file = ellipse_tri.e
[]
[extrude]
type = MeshExtruderGenerator
input = file
num_layers = 20
extrusion_vector = '0 0 5'
bottom_sideset = '2'
top_sideset = '4'
[]
[]
[Variables]
active = 'u'
[u]
order = FIRST
family = LAGRANGE
[]
[]
[Kernels]
active = 'diff'
[diff]
type = Diffusion
variable = u
[]
[]
[BCs]
[bottom]
type = DirichletBC
variable = u
boundary = 2
value = 0
[]
[top]
type = DirichletBC
variable = u
boundary = 4
value = 1
[]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
[]
[Outputs]
file_base = out_tri
exodus = true
[]
[Debug]
show_actions = true
[]
(modules/contact/test/tests/bouncing-block-contact/frictional-nodal-min-normal-lm-mortar-pdass-tangential-lm-mortar-disp.i)
starting_point = 2e-1
# We offset slightly so we avoid the case where the bottom of the secondary block and the top of the
# primary block are perfectly vertically aligned which can cause the backtracking line search some
# issues for a coarse mesh (basic line search handles that fine)
offset = 1e-2
[GlobalParams]
displacements = 'disp_x disp_y'
diffusivity = 1e0
scaling = 1e0
[]
[Mesh]
[file_mesh]
type = FileMeshGenerator
file = long-bottom-block-1elem-blocks-coarse.e
[]
[]
[Variables]
[disp_x]
block = '1 2'
# order = SECOND
[]
[disp_y]
block = '1 2'
# order = SECOND
[]
[frictional_normal_lm]
block = 3
use_dual = true
[]
[frictional_tangential_lm]
block = 3
use_dual = true
[]
[]
[ICs]
[disp_y]
block = 2
variable = disp_y
value = '${fparse starting_point + offset}'
type = ConstantIC
[]
[]
[Kernels]
[disp_x]
type = MatDiffusion
variable = disp_x
[]
[disp_y]
type = MatDiffusion
variable = disp_y
[]
[]
[Constraints]
[frictional_normal_lm]
type = ComputeFrictionalForceLMMechanicalContact
primary_boundary = 20
secondary_boundary = 10
primary_subdomain = 4
secondary_subdomain = 3
variable = frictional_normal_lm
friction_lm = frictional_tangential_lm
disp_x = disp_x
disp_y = disp_y
mu = 0.1
c = 1.0e-2
c_t = 1.0e-1
[]
[normal_x]
type = NormalMortarMechanicalContact
primary_boundary = 20
secondary_boundary = 10
primary_subdomain = 4
secondary_subdomain = 3
variable = frictional_normal_lm
secondary_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = false
[]
[normal_y]
type = NormalMortarMechanicalContact
primary_boundary = 20
secondary_boundary = 10
primary_subdomain = 4
secondary_subdomain = 3
variable = frictional_normal_lm
secondary_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = false
[]
[tangential_x]
type = TangentialMortarMechanicalContact
primary_boundary = 20
secondary_boundary = 10
primary_subdomain = 4
secondary_subdomain = 3
variable = frictional_tangential_lm
secondary_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = false
[]
[tangential_y]
type = TangentialMortarMechanicalContact
primary_boundary = 20
secondary_boundary = 10
primary_subdomain = 4
secondary_subdomain = 3
variable = frictional_tangential_lm
secondary_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = false
[]
[]
[BCs]
[botx]
type = DirichletBC
variable = disp_x
boundary = 40
value = 0.0
[]
[boty]
type = DirichletBC
variable = disp_y
boundary = 40
value = 0.0
[]
[topy]
type = FunctionDirichletBC
variable = disp_y
boundary = 30
function = '${starting_point} * cos(2 * pi / 40 * t) + ${offset}'
[]
[leftx]
type = FunctionDirichletBC
variable = disp_x
boundary = 50
function = '1e-2 * t'
[]
[]
[Executioner]
type = Transient
end_time = 200
dt = 5
dtmin = .1
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason -pc_svd_monitor '
'-snes_linesearch_monitor -snes_ksp_ew'
petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount -mat_mffd_err'
petsc_options_value = 'lu NONZERO 1e-15 1e-5'
l_max_its = 30
nl_max_its = 20
line_search = 'none'
snesmf_reuse_base = false
[]
[Debug]
show_var_residual_norms = true
[]
[Outputs]
exodus = true
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
[Postprocessors]
[]
(test/tests/meshgenerators/sidesets_between_subdomains_generator/between.i)
[Mesh]
[./fmg]
type = FileMeshGenerator
file = twoblocks.e
[]
[./extrude]
type = SideSetsBetweenSubdomainsGenerator
input = fmg
primary_block = 'left'
paired_block = 'right'
new_boundary = 'in_between'
[../]
[]
[Outputs]
exodus = true
[]
(modules/peridynamics/test/tests/mesh/2D_convert_one_retain.i)
[Mesh]
type = PeridynamicsMesh
horizon_number = 3
[./fmg]
type = FileMeshGenerator
file = 2D_2blocks.e
[../]
[./gpd]
type = MeshGeneratorPD
input = fmg
retain_fe_mesh = true
blocks_to_pd = 2
#blocks_as_fe = 1
[../]
[]
# This input file is intended to be run with the "--mesh-only" option so
# no other sections are required
(modules/heat_conduction/test/tests/meshed_gap_thermal_contact/meshed_gap_thermal_contact.i)
[Mesh]
[fmesh]
type = FileMeshGenerator
file = meshed_gap.e
[]
[block0]
type = SubdomainBoundingBoxGenerator
input = fmesh
bottom_left = '.5 -.5 0'
top_right = '.7 .5 0'
block_id = 4
[]
[]
[Variables]
[./temp]
block = '1 3'
initial_condition = 1.0
[../]
[]
[Kernels]
[./hc]
type = HeatConduction
variable = temp
block = '1 3'
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = temp
boundary = 1
value = 1
[../]
[./right]
type = DirichletBC
variable = temp
boundary = 4
value = 2
[../]
[]
[ThermalContact]
[./gap_conductivity]
type = GapHeatTransfer
variable = temp
primary = 2
secondary = 3
emissivity_primary = 0
emissivity_secondary = 0
gap_conductivity = 0.5
[../]
[]
[Materials]
[./hcm]
type = HeatConductionMaterial
block = '1 3'
temp = temp
thermal_conductivity = 1
[../]
[]
[Problem]
type = FEProblem
kernel_coverage_check = false
material_coverage_check = false
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
[./out]
type = Exodus
[../]
[]
(test/tests/mesh_modifiers/modifier_depend_order/modifier_depend_order.i)
[Mesh]
[file]
type = FileMeshGenerator
file = square.e
[]
# Mesh Modifiers
# If no dependencies are defined, the order of execution is not defined (based on pointer locations) so
# this test case has several dependencies to minimize the chance of getting lucky when things aren't defined properly.
# Rotations along different axes must occur in a defined order to end up at the right orientation at the end.
# The final mesh will be angled at 45 degrees with new sidesets where there were none before.
[add_side_sets]
type = SideSetsFromNormalsGenerator
input = last_rotate
normals = ' 0.70710678118 0.70710678118 0
-0.70710678118 -0.70710678118 0'
new_boundary = 'up_right down_left'
variance = 1e-3
fixed_normal = true
[]
[last_rotate]
type = TransformGenerator
input = rotate4
transform = ROTATE
vector_value = '-45 0 0'
[]
[rotate1]
type = TransformGenerator
input = file
transform = ROTATE
vector_value = '0 0 82'
[]
[rotate3]
type = TransformGenerator
input = rotate2
transform = ROTATE
vector_value = '0 36 0'
[]
[rotate4]
type = TransformGenerator
input = rotate3
transform = ROTATE
vector_value = '0 0 -82'
[]
[rotate2]
type = TransformGenerator
input = rotate1
transform = ROTATE
vector_value = '0 -36 0'
[]
[]
[Variables]
[u]
[]
[]
[Kernels]
[diff]
type = Diffusion
variable = u
[]
[]
[BCs]
[bottom]
type = DirichletBC
variable = u
boundary = down_left
value = 0
[]
[top]
type = DirichletBC
variable = u
boundary = up_right
value = 1
[]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(test/tests/meshgenerators/smooth_mesh_generator/mesh_smoother_generator.i)
[Mesh]
[./fmg]
type = FileMeshGenerator
file = concentric_circle_mesh_in.e
[]
[./smooth]
type = SmoothMeshGenerator
input = fmg
iterations = 3
[]
[]
[Outputs]
exodus = true
[]
(modules/ray_tracing/test/tests/raybcs/reflect_ray_bc/reflect_ray_bc_nonplanar.i)
[Mesh]
[file]
type = FileMeshGenerator
file = nonplanar.e
[]
[subdomains]
type = ParsedSubdomainMeshGenerator
input = file
combinatorial_geometry = 'x > 0.5'
block_id = 1
[]
[internal_sideset]
type = SideSetsBetweenSubdomainsGenerator
input = subdomains
primary_block = 0
paired_block = 1
new_boundary = internal
[]
[]
[UserObjects/study]
type = RepeatableRayStudy
start_points = '0 0 0'
directions = '1 1 1'
names = 'ray'
warn_non_planar = false
use_internal_sidesets = true
execute_on = initial
tolerate_failure = true
[]
[RayBCs]
[kill]
type = KillRayBC
boundary = 'top right bottom left front back'
[]
[reflect_internal]
type = ReflectRayBC
boundary = internal
[]
[]
[RayKernels/null]
type = NullRayKernel
[]
[Executioner]
type = Steady
[]
[Problem]
solve = false
[]
(test/tests/meshgenerators/gmsh/gmsh_test.i)
[Mesh]
[./fmg]
type = FileMeshGenerator
file = sample.msh
[]
[]
(test/tests/meshgenerators/mesh_extruder_generator/extrude_quad.i)
[Mesh]
[./fmg]
type = FileMeshGenerator
file = chimney_quad.e
[]
[./extrude]
type = MeshExtruderGenerator
input = fmg
num_layers = 20
extrusion_vector = '0 1e-2 0'
bottom_sideset = 'new_bottom'
top_sideset = 'new_top'
[]
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./bottom]
type = DirichletBC
variable = u
boundary = 'new_bottom'
value = 0
[../]
[./top]
type = DirichletBC
variable = u
boundary = 'new_top'
value = 1
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
[]
[Outputs]
file_base = out_quad
exodus = true
[]
(modules/contact/test/tests/bouncing-block-contact/frictional-nodal-min-normal-lm-mortar-fb-tangential-lm-mortar-action.i)
starting_point = 2e-1
# We offset slightly so we avoid the case where the bottom of the secondary block and the top of the
# primary block are perfectly vertically aligned which can cause the backtracking line search some
# issues for a coarse mesh (basic line search handles that fine)
offset = 1e-2
[GlobalParams]
displacements = 'disp_x disp_y'
diffusivity = 1e0
scaling = 1e0
[]
[Mesh]
[./original_file_mesh]
type = FileMeshGenerator
file = long-bottom-block-1elem-blocks-coarse.e
[../]
# These sidesets need to be deleted because the contact action adds them automatically. For this
# particular mesh, the new IDs will be identical to the deleted ones and will conflict if we don't
# remove the original ones.
[./delete_3]
type = BlockDeletionGenerator
input = original_file_mesh
block = 3
[../]
[./revised_file_mesh]
type = BlockDeletionGenerator
input = delete_3
block = 4
[../]
[]
[Variables]
[./disp_x]
block = '1 2'
# order = SECOND
[../]
[./disp_y]
block = '1 2'
# order = SECOND
[../]
[]
[Contact]
[frictional]
mesh = revised_file_mesh
primary = 20
secondary = 10
formulation = mortar
model = coulomb
friction_coefficient = 0.1
mortar_approach = legacy
c_normal = 1e0
[]
[]
[ICs]
[./disp_y]
block = 2
variable = disp_y
value = ${fparse starting_point + offset}
type = ConstantIC
[../]
[]
[Kernels]
[./disp_x]
type = MatDiffusion
variable = disp_x
[../]
[./disp_y]
type = MatDiffusion
variable = disp_y
[../]
[]
[BCs]
[./botx]
type = DirichletBC
variable = disp_x
boundary = 40
value = 0.0
[../]
[./boty]
type = DirichletBC
variable = disp_y
boundary = 40
value = 0.0
[../]
[./topy]
type = FunctionDirichletBC
variable = disp_y
boundary = 30
function = '${starting_point} * cos(2 * pi / 40 * t) + ${offset}'
[../]
[./leftx]
type = FunctionDirichletBC
variable = disp_x
boundary = 50
function = '1e-2 * t'
[../]
[]
[Executioner]
type = Transient
end_time = 200
dt = 5
dtmin = .1
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason -pc_svd_monitor -snes_linesearch_monitor -snes_ksp_ew'
petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount -mat_mffd_err'
petsc_options_value = 'lu NONZERO 1e-15 1e-5'
l_max_its = 30
nl_max_its = 20
line_search = 'none'
[]
[Debug]
show_var_residual_norms = true
[]
[Outputs]
exodus = true
hide = 'contact_pressure nodal_area_frictional penetration'
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Postprocessors]
[./num_nl]
type = NumNonlinearIterations
[../]
[./cumulative]
type = CumulativeValuePostprocessor
postprocessor = num_nl
[../]
[contact]
type = ContactDOFSetSize
variable = frictional_normal_lm
subdomain = frictional_secondary_subdomain
execute_on = 'nonlinear timestep_end'
[]
[]
(modules/tensor_mechanics/test/tests/domain_integral_thermal/interaction_integral_2d_rot.i)
#This problem from [Wilson 1979] tests the thermal strain term in the
#interaction integral
#
#theta_e = 10 degrees C; a = 252; E = 207000; nu = 0.3; alpha = 1.35e-5
#
#With uniform_refine = 3, KI converges to
#KI = 5.602461e+02 (interaction integral)
#KI = 5.655005e+02 (J-integral)
#
#Both are in good agreement with [Shih 1986]:
#average_value = 0.4857 = KI / (sigma_theta * sqrt(pi * a))
#sigma_theta = E * alpha * theta_e / (1 - nu)
# = 207000 * 1.35e-5 * 10 / (1 - 0.3) = 39.9214
#KI = average_value * sigma_theta * sqrt(pi * a) = 5.656e+02
#
#References:
#W.K. Wilson, I.-W. Yu, Int J Fract 15 (1979) 377-387
#C.F. Shih, B. Moran, T. Nakamura, Int J Fract 30 (1986) 79-102
[GlobalParams]
order = FIRST
family = LAGRANGE
displacements = 'disp_x disp_y'
volumetric_locking_correction = False
[]
[Mesh]
displacements = 'disp_x disp_y'
[file_mesh]
type = FileMeshGenerator
file = crack2d.e
[]
[rotate]
type = TransformGenerator
transform = ROTATE
vector_value = '0 0 90'
input = file_mesh
[]
[]
[AuxVariables]
[./SED]
order = CONSTANT
family = MONOMIAL
[../]
[./temp]
order = FIRST
family = LAGRANGE
[../]
[]
[Functions]
[./tempfunc]
type = ParsedFunction
value = 10.0*(2*y/504)
[../]
[]
[DomainIntegral]
integrals = 'KFromJIntegral InteractionIntegralKI'
boundary = 800
crack_direction_method = CrackDirectionVector
crack_direction_vector = '0 1 0'
2d = true
axis_2d = 2
radius_inner = '60.0 80.0 100.0 120.0'
radius_outer = '80.0 100.0 120.0 140.0'
symmetry_plane = 0
incremental = true
# interaction integral parameters
disp_x = disp_x
disp_y = disp_y
block = 1
youngs_modulus = 207000
poissons_ratio = 0.3
temperature = temp
eigenstrain_names = thermal_expansion
[]
[Modules/TensorMechanics/Master]
[./master]
strain = FINITE
add_variables = true
incremental = true
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
planar_formulation = PLANE_STRAIN
eigenstrain_names = thermal_expansion
[../]
[]
[AuxKernels]
[./SED]
type = MaterialRealAux
variable = SED
property = strain_energy_density
execute_on = timestep_end
[../]
[./tempfuncaux]
type = FunctionAux
variable = temp
function = tempfunc
block = 1
[../]
[]
[BCs]
[./crack_x]
type = DirichletBC
variable = disp_x
boundary = 100
value = 0.0
[../]
[./no_x]
type = DirichletBC
variable = disp_x
boundary = 400
value = 0.0
[../]
[./no_y1]
type = DirichletBC
variable = disp_y
boundary = 900
value = 0.0
[../]
[] # BCs
[Materials]
[./elasticity_tensor]
type = ComputeIsotropicElasticityTensor
youngs_modulus = 207000
poissons_ratio = 0.3
[../]
[./elastic_stress]
type = ComputeFiniteStrainElasticStress
[../]
[./thermal_expansion_strain]
type = ComputeThermalExpansionEigenstrain
stress_free_temperature = 0.0
thermal_expansion_coeff = 1.35e-5
temperature = temp
eigenstrain_name = thermal_expansion
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
petsc_options_value = 'asm 31 preonly lu 1'
line_search = 'none'
l_max_its = 50
nl_max_its = 40
nl_rel_step_tol= 1e-10
nl_rel_tol = 1e-10
start_time = 0.0
dt = 1
end_time = 1
num_steps = 1
[]
[Outputs]
file_base = interaction_integral_2d_rot_out
exodus = true
csv = true
[]
[Preconditioning]
active = 'smp'
[./smp]
type = SMP
pc_side = left
ksp_norm = preconditioned
full = true
[../]
[]
(test/tests/mesh_modifiers/sidesets_around_subdomain/around_normals.i)
[Mesh]
[file]
type = FileMeshGenerator
file = twoblocks.e
[]
[top_block_1]
type = SideSetsAroundSubdomainGenerator
input = file
block = 'left'
new_boundary = 'top_of_left_block'
normal = '0 0 1'
[]
[bottom_block_2]
type = SideSetsAroundSubdomainGenerator
input = top_block_1
block = 'right'
new_boundary = 'bottom_of_right_block'
normal = '0 0 -1'
[]
[right_block_1]
type = SideSetsAroundSubdomainGenerator
input = bottom_block_2
block = 'left'
new_boundary = 'right_of_left_block'
normal = '1 0 0'
[]
[right_block_2]
type = SideSetsAroundSubdomainGenerator
input = right_block_1
block = 'right'
new_boundary = 'right_of_right_block'
normal = '1 0 0'
[]
[]
# This input file is intended to be run with the "--mesh-only" option so
# no other sections are required
(modules/heat_conduction/test/tests/gap_heat_transfer_htonly/gap_heat_transfer_htonly_rz_test.i)
#
# 2-D RZ Gap Heat Transfer Test without mechanics
#
# This test exercises 1-D gap heat transfer for a constant conductivity gap.
#
# The mesh consists of two element blocks containing one element each. Each
# element is a unit cube. They sit next to one another with a unit between them.
#
# The conductivity of both blocks is set very large to achieve a uniform temperature
# across each block. The temperature of the far left boundary
# is ramped from 100 to 200 over one time unit, and then held fixed for an additional
# time unit. The temperature of the far right boundary is held fixed at 100.
#
# A simple analytical solution is possible for the heat flux between the blocks, or cylinders in the case of RZ.:
#
# Flux = (T_left - T_right) * (gapK/(r*ln(r2/r1)))
#
# For gapK = 1 (default value)
#
# The integrated heat flux across the gap at time 2 is then:
#
# 2*pi*h*k*delta_T/(ln(r2/r1))
# 2*pi*1*1*100/(ln(2/1)) = 906.5 watts
#
# For comparison, see results from the flux post processors.
#
# As a second test, use the rectilinear (parallel plate) form of the gap heat transfer.
#
# Flux = (T_left - T_right) * (gapK/gapL)
#
# For gapK = 1 (default value)
#
# The integrated heat flux across the gap at time 2 is then:
#
# 2*pi*h*k*delta_T/(1)
# 2*pi*1*1*100/(1) = 628.3 watts
#
# For comparison, see results from the flux post processors.
#
[Problem]
coord_type = RZ
rz_coord_axis = Y # this is modified through CLI args to test Z-R as opposed to R-Z
[]
[Mesh]
active = 'file'
[file]
type = FileMeshGenerator
file = gap_heat_transfer_htonly_rz_test.e
[]
[rotate]
type = TransformGenerator
transform = ROTATE
vector_value = '90 0 0'
input = file
[]
[]
[Functions]
[./ramp]
type = PiecewiseLinear
x = '0 1 2'
y = '100 200 200'
[../]
[]
[ThermalContact]
[./thermal_contact]
type = GapHeatTransfer
variable = temp
primary = 3
secondary = 2
emissivity_primary = 0
emissivity_secondary = 0
[../]
[./thermal_contact2]
type = GapHeatTransfer
variable = temp2
primary = 3
secondary = 2
emissivity_primary = 0
emissivity_secondary = 0
gap_geometry_type = PLATE
appended_property_name = 2
[../]
[]
[Variables]
[./temp]
order = FIRST
family = LAGRANGE
initial_condition = 100
[../]
[./temp2]
order = FIRST
family = LAGRANGE
initial_condition = 100
[../]
[]
[AuxVariables]
[./gap_cond]
order = CONSTANT
family = MONOMIAL
[../]
[./gap_cond2]
order = CONSTANT
family = MONOMIAL
[../]
[]
[Kernels]
[./heat]
type = HeatConduction
variable = temp
[../]
[./heat2]
type = HeatConduction
variable = temp2
[../]
[]
[BCs]
[./temp_far_left]
type = FunctionDirichletBC
boundary = 1
variable = temp
function = ramp
[../]
[./temp_far_right]
type = DirichletBC
boundary = 4
variable = temp
value = 100
[../]
[./temp_far_left2]
type = FunctionDirichletBC
boundary = 1
variable = temp2
function = ramp
[../]
[./temp_far_right2]
type = DirichletBC
boundary = 4
variable = temp2
value = 100
[../]
[]
[AuxKernels]
[./conductance]
type = MaterialRealAux
property = gap_conductance
variable = gap_cond
boundary = 2
[../]
[./conductance2]
type = MaterialRealAux
property = gap_conductance
variable = gap_cond2
boundary = 2
[../]
[]
[Materials]
[./heat1]
type = HeatConductionMaterial
block = '1 2'
specific_heat = 1.0
thermal_conductivity = 1e6
[../]
[./density]
type = GenericConstantMaterial
block = '1 2'
prop_names = 'density'
prop_values = '1.0'
[../]
[]
[Executioner]
type = Transient
# petsc_options = '-snes_mf_operator -ksp_monitor -snes_ksp_ew'
#Preconditioned JFNK (default)
solve_type = 'PJFNK'
# petsc_options_iname = '-snes_type -snes_ls -snes_linesearch_type -ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
# petsc_options_value = 'ls basic basic 201 hypre boomeramg 4'
# petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
# petsc_options_value = '201 hypre boomeramg 4'
nl_abs_tol = 1e-3
nl_rel_tol = 1e-8
l_tol = 1e-6
l_max_its = 100
start_time = 0.0
dt = 1e-1
dtmin = 1e-1
end_time = 2.0
[]
[Postprocessors]
[./temp_left]
type = SideAverageValue
boundary = 2
variable = temp
execute_on = 'initial timestep_end'
[../]
[./temp_right]
type = SideAverageValue
boundary = 3
variable = temp
execute_on = 'initial timestep_end'
[../]
[./flux_left]
type = SideDiffusiveFluxIntegral
variable = temp
boundary = 2
diffusivity = thermal_conductivity
[../]
[./flux_right]
type = SideDiffusiveFluxIntegral
variable = temp
boundary = 3
diffusivity = thermal_conductivity
[../]
[./temp_left2]
type = SideAverageValue
boundary = 2
variable = temp2
execute_on = 'initial timestep_end'
[../]
[./temp_right2]
type = SideAverageValue
boundary = 3
variable = temp2
execute_on = 'initial timestep_end'
[../]
[./flux_left2]
type = SideDiffusiveFluxIntegral
variable = temp2
boundary = 2
diffusivity = thermal_conductivity
[../]
[./flux_right2]
type = SideDiffusiveFluxIntegral
variable = temp2
boundary = 3
diffusivity = thermal_conductivity
[../]
[]
[Outputs]
exodus = true
[]
(modules/tensor_mechanics/examples/coal_mining/coarse.i)
# Strata deformation and fracturing around a coal mine - 3D model
#
# A "half model" is used. The mine is 400m deep and
# just the roof is studied (-400<=z<=0). The mining panel
# sits between 0<=x<=150, and 0<=y<=1000, so this simulates
# a coal panel that is 300m wide and 1000m long. The outer boundaries
# are 1km from the excavation boundaries.
#
# Time is meaningless in this example
# as quasi-static solutions are sought at each timestep, but
# the number of timesteps controls the resolution of the
# process.
#
# The boundary conditions for this simulation are:
# - disp_x = 0 at x=0 and x=1150
# - disp_y = 0 at y=-1000 and y=1000
# - disp_z = 0 at z=-400, but there is a time-dependent
# Young's modulus that simulates excavation
# - wc_x = 0 at y=-1000 and y=1000
# - wc_y = 0 at x=0 and x=1150
# That is, rollers on the sides, free at top,
# and prescribed at bottom in the unexcavated portion.
#
# The small strain formulation is used.
#
# All stresses are measured in MPa. The initial stress is consistent with
# the weight force from density 2500 kg/m^3, ie, stress_zz = 0.025*z MPa
# where gravity = 10 m.s^-2 = 1E-5 MPa m^2/kg. The maximum and minimum
# principal horizontal stresses are assumed to be equal to 0.8*stress_zz.
#
# Material properties:
# Young's modulus = 8 GPa
# Poisson's ratio = 0.25
# Cosserat layer thickness = 1 m
# Cosserat-joint normal stiffness = large
# Cosserat-joint shear stiffness = 1 GPa
# MC cohesion = 3 MPa
# MC friction angle = 37 deg
# MC dilation angle = 8 deg
# MC tensile strength = 1 MPa
# MC compressive strength = 100 MPa
# WeakPlane cohesion = 0.1 MPa
# WeakPlane friction angle = 30 deg
# WeakPlane dilation angle = 10 deg
# WeakPlane tensile strength = 0.1 MPa
# WeakPlane compressive strength = 100 MPa softening to 1 MPa at strain = 1
#
[Mesh]
[file]
type = FileMeshGenerator
file = mesh/coarse.e
[]
[./xmin]
input = file
type = SideSetsAroundSubdomainGenerator
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
new_boundary = xmin
normal = '-1 0 0'
[../]
[./xmax]
input = xmin
type = SideSetsAroundSubdomainGenerator
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
new_boundary = xmax
normal = '1 0 0'
[../]
[./ymin]
input = xmax
type = SideSetsAroundSubdomainGenerator
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
new_boundary = ymin
normal = '0 -1 0'
[../]
[./ymax]
input = ymin
type = SideSetsAroundSubdomainGenerator
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
new_boundary = ymax
normal = '0 1 0'
[../]
[./zmax]
input = ymax
type = SideSetsAroundSubdomainGenerator
block = 16
new_boundary = zmax
normal = '0 0 1'
[../]
[./zmin]
input = zmax
type = SideSetsAroundSubdomainGenerator
block = 2
new_boundary = zmin
normal = '0 0 -1'
[../]
[./excav]
type = SubdomainBoundingBoxGenerator
input = zmin
block_id = 1
bottom_left = '0 0 -400'
top_right = '150 1000 -397'
[../]
[./roof]
type = SideSetsAroundSubdomainGenerator
block = 1
input = excav
new_boundary = roof
normal = '0 0 1'
[../]
[]
[GlobalParams]
perform_finite_strain_rotations = false
displacements = 'disp_x disp_y disp_z'
Cosserat_rotations = 'wc_x wc_y wc_z'
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[./disp_z]
[../]
[./wc_x]
[../]
[./wc_y]
[../]
[]
[Kernels]
[./cx_elastic]
type = CosseratStressDivergenceTensors
use_displaced_mesh = false
variable = disp_x
component = 0
[../]
[./cy_elastic]
type = CosseratStressDivergenceTensors
use_displaced_mesh = false
variable = disp_y
component = 1
[../]
[./cz_elastic]
type = CosseratStressDivergenceTensors
use_displaced_mesh = false
variable = disp_z
component = 2
[../]
[./x_couple]
type = StressDivergenceTensors
use_displaced_mesh = false
variable = wc_x
displacements = 'wc_x wc_y wc_z'
component = 0
base_name = couple
[../]
[./y_couple]
type = StressDivergenceTensors
use_displaced_mesh = false
variable = wc_y
displacements = 'wc_x wc_y wc_z'
component = 1
base_name = couple
[../]
[./x_moment]
type = MomentBalancing
use_displaced_mesh = false
variable = wc_x
component = 0
[../]
[./y_moment]
type = MomentBalancing
use_displaced_mesh = false
variable = wc_y
component = 1
[../]
[./gravity]
type = Gravity
use_displaced_mesh = false
variable = disp_z
value = -10E-6 # remember this is in MPa
[../]
[]
[AuxVariables]
[./wc_z]
[../]
[./stress_xx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_xz]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_yz]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zx]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zy]
order = CONSTANT
family = MONOMIAL
[../]
[./stress_zz]
order = CONSTANT
family = MONOMIAL
[../]
[./mc_shear]
order = CONSTANT
family = MONOMIAL
[../]
[./mc_tensile]
order = CONSTANT
family = MONOMIAL
[../]
[./wp_shear]
order = CONSTANT
family = MONOMIAL
[../]
[./wp_tensile]
order = CONSTANT
family = MONOMIAL
[../]
[./wp_shear_f]
order = CONSTANT
family = MONOMIAL
[../]
[./wp_tensile_f]
order = CONSTANT
family = MONOMIAL
[../]
[./mc_shear_f]
order = CONSTANT
family = MONOMIAL
[../]
[./mc_tensile_f]
order = CONSTANT
family = MONOMIAL
[../]
[]
[AuxKernels]
[./stress_xx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xx
index_i = 0
index_j = 0
[../]
[./stress_xy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xy
index_i = 0
index_j = 1
[../]
[./stress_xz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_xz
index_i = 0
index_j = 2
[../]
[./stress_yx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yx
index_i = 1
index_j = 0
[../]
[./stress_yy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yy
index_i = 1
index_j = 1
[../]
[./stress_yz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_yz
index_i = 1
index_j = 2
[../]
[./stress_zx]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zx
index_i = 2
index_j = 0
[../]
[./stress_zy]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zy
index_i = 2
index_j = 1
[../]
[./stress_zz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zz
index_i = 2
index_j = 2
[../]
[./mc_shear]
type = MaterialStdVectorAux
index = 0
property = mc_plastic_internal_parameter
variable = mc_shear
[../]
[./mc_tensile]
type = MaterialStdVectorAux
index = 1
property = mc_plastic_internal_parameter
variable = mc_tensile
[../]
[./wp_shear]
type = MaterialStdVectorAux
index = 0
property = wp_plastic_internal_parameter
variable = wp_shear
[../]
[./wp_tensile]
type = MaterialStdVectorAux
index = 1
property = wp_plastic_internal_parameter
variable = wp_tensile
[../]
[./mc_shear_f]
type = MaterialStdVectorAux
index = 6
property = mc_plastic_yield_function
variable = mc_shear_f
[../]
[./mc_tensile_f]
type = MaterialStdVectorAux
index = 0
property = mc_plastic_yield_function
variable = mc_tensile_f
[../]
[./wp_shear_f]
type = MaterialStdVectorAux
index = 0
property = wp_plastic_yield_function
variable = wp_shear_f
[../]
[./wp_tensile_f]
type = MaterialStdVectorAux
index = 1
property = wp_plastic_yield_function
variable = wp_tensile_f
[../]
[]
[BCs]
[./no_x]
type = DirichletBC
variable = disp_x
boundary = 'xmin xmax'
value = 0.0
[../]
[./no_y]
type = DirichletBC
variable = disp_y
boundary = 'ymin ymax'
value = 0.0
[../]
[./no_z]
type = DirichletBC
variable = disp_z
boundary = zmin
value = 0.0
[../]
[./no_wc_x]
type = DirichletBC
variable = wc_x
boundary = 'ymin ymax'
value = 0.0
[../]
[./no_wc_y]
type = DirichletBC
variable = wc_y
boundary = 'xmin xmax'
value = 0.0
[../]
[./roof]
type = StickyBC
variable = disp_z
min_value = -3.0
boundary = roof
[../]
[]
[Functions]
[./ini_xx]
type = ParsedFunction
value = '0.8*2500*10E-6*z'
[../]
[./ini_zz]
type = ParsedFunction
value = '2500*10E-6*z'
[../]
[./excav_sideways]
type = ParsedFunction
vars = 'end_t ymin ymax minval maxval slope'
vals = '17.0 0 1000.0 1E-9 1 60'
# excavation face at ymin+(ymax-ymin)*min(t/end_t,1)
# slope is the distance over which the modulus reduces from maxval to minval
value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),minval,if(y<ymin+(ymax-ymin)*min(t/end_t,1)+slope,minval+(maxval-minval)*(y-(ymin+(ymax-ymin)*min(t/end_t,1)))/slope,maxval))'
[../]
[./density_sideways]
type = ParsedFunction
vars = 'end_t ymin ymax minval maxval'
vals = '17.0 0 1000.0 0 2500'
value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),minval,maxval)'
[../]
[]
[UserObjects]
[./mc_coh_strong_harden]
type = TensorMechanicsHardeningExponential
value_0 = 2.99 # MPa
value_residual = 3.01 # MPa
rate = 1.0
[../]
[./mc_fric]
type = TensorMechanicsHardeningConstant
value = 0.65 # 37deg
[../]
[./mc_dil]
type = TensorMechanicsHardeningConstant
value = 0.15 # 8deg
[../]
[./mc_tensile_str_strong_harden]
type = TensorMechanicsHardeningExponential
value_0 = 1.0 # MPa
value_residual = 1.0 # MPa
rate = 1.0
[../]
[./mc_compressive_str]
type = TensorMechanicsHardeningCubic
value_0 = 100 # Large!
value_residual = 100
internal_limit = 0.1
[../]
[./wp_coh_harden]
type = TensorMechanicsHardeningCubic
value_0 = 0.1
value_residual = 0.1
internal_limit = 10
[../]
[./wp_tan_fric]
type = TensorMechanicsHardeningConstant
value = 0.36 # 20deg
[../]
[./wp_tan_dil]
type = TensorMechanicsHardeningConstant
value = 0.18 # 10deg
[../]
[./wp_tensile_str_harden]
type = TensorMechanicsHardeningCubic
value_0 = 0.1
value_residual = 0.1
internal_limit = 10
[../]
[./wp_compressive_str_soften]
type = TensorMechanicsHardeningCubic
value_0 = 100
value_residual = 1
internal_limit = 1.0
[../]
[]
[Materials]
[./elasticity_tensor_0]
type = ComputeLayeredCosseratElasticityTensor
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
young = 8E3 # MPa
poisson = 0.25
layer_thickness = 1.0
joint_normal_stiffness = 1E9 # huge
joint_shear_stiffness = 1E3 # MPa
[../]
[./elasticity_tensor_1]
type = ComputeLayeredCosseratElasticityTensor
block = 1
young = 8E3 # MPa
poisson = 0.25
layer_thickness = 1.0
joint_normal_stiffness = 1E9 # huge
joint_shear_stiffness = 1E3 # MPa
elasticity_tensor_prefactor = excav_sideways
[../]
[./strain]
type = ComputeCosseratIncrementalSmallStrain
eigenstrain_names = ini_stress
[../]
[./ini_stress]
type = ComputeEigenstrainFromInitialStress
eigenstrain_name = ini_stress
initial_stress = 'ini_xx 0 0 0 ini_xx 0 0 0 ini_zz'
[../]
[./stress_0]
type = ComputeMultipleInelasticCosseratStress
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
inelastic_models = 'mc wp'
cycle_models = true
relative_tolerance = 2.0
absolute_tolerance = 1E6
max_iterations = 1
tangent_operator = nonlinear
perform_finite_strain_rotations = false
[../]
[./stress_1]
type = ComputeMultipleInelasticCosseratStress
block = 1
inelastic_models = ''
relative_tolerance = 2.0
absolute_tolerance = 1E6
max_iterations = 1
tangent_operator = nonlinear
perform_finite_strain_rotations = false
[../]
[./mc]
type = CappedMohrCoulombCosseratStressUpdate
warn_about_precision_loss = false
host_youngs_modulus = 8E3
host_poissons_ratio = 0.25
base_name = mc
tensile_strength = mc_tensile_str_strong_harden
compressive_strength = mc_compressive_str
cohesion = mc_coh_strong_harden
friction_angle = mc_fric
dilation_angle = mc_dil
max_NR_iterations = 100000
smoothing_tol = 0.1 # MPa # Must be linked to cohesion
yield_function_tol = 1E-9 # MPa. this is essentially the lowest possible without lots of precision loss
perfect_guess = true
min_step_size = 1.0
[../]
[./wp]
type = CappedWeakPlaneCosseratStressUpdate
warn_about_precision_loss = false
base_name = wp
cohesion = wp_coh_harden
tan_friction_angle = wp_tan_fric
tan_dilation_angle = wp_tan_dil
tensile_strength = wp_tensile_str_harden
compressive_strength = wp_compressive_str_soften
max_NR_iterations = 10000
tip_smoother = 0.1
smoothing_tol = 0.1 # MPa # Note, this must be tied to cohesion, otherwise get no possible return at cone apex
yield_function_tol = 1E-11 # MPa. this is essentially the lowest possible without lots of precision loss
perfect_guess = true
min_step_size = 1.0E-3
[../]
[./density_0]
type = GenericConstantMaterial
block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
prop_names = density
prop_values = 2500
[../]
[./density_1]
type = GenericFunctionMaterial
block = 1
prop_names = density
prop_values = density_sideways
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[]
[]
[Postprocessors]
[./min_roof_disp]
type = NodalExtremeValue
boundary = roof
value_type = min
variable = disp_z
[../]
[./min_surface_disp]
type = NodalExtremeValue
boundary = zmax
value_type = min
variable = disp_z
[../]
[]
[Executioner]
type = Transient
solve_type = 'NEWTON'
petsc_options = '-snes_converged_reason'
petsc_options_iname = '-pc_type -ksp_type -ksp_gmres_restart'
petsc_options_value = ' bjacobi gmres 200'
line_search = bt
nl_abs_tol = 1e-3
nl_rel_tol = 1e-5
l_max_its = 30
nl_max_its = 1000
start_time = 0.0
dt = 0.5 # this gives min(disp_z)=-4.3, use dt=0.0625 if you want to restrict disp_z>=-3.2
end_time = 17.0
[]
[Outputs]
interval = 1
print_linear_residuals = false
exodus = true
csv = true
console = true
[]
(modules/combined/test/tests/exception/nonad.i)
[GlobalParams]
order = SECOND
displacements = 'disp_x disp_y'
[]
[Problem]
coord_type = RZ
[]
[Mesh]
patch_update_strategy = iteration
[./gen]
type = FileMeshGenerator
file = mesh.e
[../]
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[./temp]
initial_condition = 501
[../]
[]
[AuxVariables]
[./density_aux]
order = CONSTANT
family = MONOMIAL
[../]
[]
[Modules/TensorMechanics/Master]
[./finite]
strain = FINITE
[../]
[]
[Kernels]
[./gravity]
type = Gravity
variable = disp_y
value = -9.81
[../]
[./heat]
type = MatDiffusion
variable = temp
diffusivity = 1
[../]
[./heat_ie]
type = TimeDerivative
variable = temp
[../]
[]
[AuxKernels]
[./conductance]
type = MaterialRealAux
property = density
variable = density_aux
boundary = inner_surface
[../]
[]
[ThermalContact]
[./thermal_contact]
type = GapHeatTransfer
variable = temp
primary = outer_interior
secondary = inner_surface
emissivity_primary = 0
emissivity_secondary = 0
quadrature = true
[../]
[]
[BCs]
[./no_x]
type = DirichletBC
variable = disp_x
boundary = 'centerline'
value = 0.0
[../]
[./no_y]
type = DirichletBC
variable = disp_y
boundary = 'centerline outer_exterior'
value = 0.0
[../]
[./temp]
type = FunctionDirichletBC
boundary = outer_exterior
variable = temp
function = '500 + t'
[../]
[]
[Materials]
[./density]
type = GenericConstantMaterial
prop_names = 'density'
prop_values = '1'
[../]
[./elasticity_tensor]
type = ComputeIsotropicElasticityTensor
youngs_modulus = 1e11
poissons_ratio = 0.3
[../]
[./inner_elastic_stress]
type = ComputeMultipleInelasticStress
inelastic_models = 'inner_creep'
block = inner
outputs = all
[../]
[./inner_creep]
type = PowerLawCreepExceptionTest
coefficient = 10e-22
n_exponent = 2
activation_energy = 0
block = inner
[../]
[./outer_stressstress]
type = ComputeFiniteStrainElasticStress
block = outer
[../]
[]
[Executioner]
type = Transient
petsc_options = ' -snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type'
petsc_options_value = 'lu'
line_search = none
nl_abs_tol = 1e-7
l_max_its = 20
num_steps = 1
dt = 1
dtmin = .1
[]
[Outputs]
exodus = true
[]
(test/tests/mesh_modifiers/add_side_sets/cylinder_normals.i)
[Mesh]
[file]
type = FileMeshGenerator
file = cylinder.e
[]
# Mesh Modifiers
[add_side_sets]
type = SideSetsFromNormalsGenerator
input = file
normals = '0 0 1
0 1 0
0 0 -1'
# This parameter allows the normal
# to vary slightly from adjacent element
# to element so that a sidset can follow
# a curve. It is false by default.
fixed_normal = false
new_boundary = 'top side bottom'
[]
[]
[Variables]
[u]
[]
[]
[Kernels]
[diff]
type = Diffusion
variable = u
[]
[]
[BCs]
[bottom]
type = DirichletBC
variable = u
boundary = bottom
value = 0
[]
[top]
type = DirichletBC
variable = u
boundary = top
value = 1
[]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(test/tests/restart/restart_steady_from_transient/steady_from_transient_restart.i)
[Mesh]
[fmg]
type = FileMeshGenerator
file = transient_out_cp/LATEST
[]
parallel_type = replicated
[]
[Functions]
[./exact_fn]
type = ParsedFunction
value = ((x*x)+(y*y))
[../]
[./forcing_fn]
type = ParsedFunction
value = -4
[../]
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[./ffn]
type = BodyForce
variable = u
function = forcing_fn
[../]
[]
[BCs]
[./all]
type = FunctionDirichletBC
variable = u
boundary = '0 1 2 3'
function = exact_fn
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
[]
[Outputs]
exodus = true
[]
[Problem]
restart_file_base = transient_out_cp/LATEST
[]
(modules/peridynamics/test/tests/mesh/Error_nonexisting_blockID.i)
[Mesh]
type = PeridynamicsMesh
horizon_number = 3
[./fmg]
type = FileMeshGenerator
file = 2D_2blocks.e
[../]
[./gpd]
type = MeshGeneratorPD
input = fmg
retain_fe_mesh = false
blocks_to_pd = 3
[../]
[]
# This input file is intended to be run with the "--mesh-only" option so
# no other sections are required
(test/tests/mesh_modifiers/mesh_extruder/extrude_remap_layer1.i)
[Mesh]
[file]
type = FileMeshGenerator
file = multiblock.e
[]
[extrude]
type = MeshExtruderGenerator
input = file
num_layers = 6
extrusion_vector = '0 0 2'
bottom_sideset = 'new_bottom'
top_sideset = 'new_top'
# Remap layers
existing_subdomains = '1 2 5'
layers = '1 3 5'
new_ids = '10 12 15
30 32 35
50 52 55'
[]
[]
[Variables]
[u]
order = FIRST
family = LAGRANGE
[]
[]
[Kernels]
[diff]
type = Diffusion
variable = u
[]
[]
[BCs]
[bottom]
type = DirichletBC
variable = u
boundary = 'new_bottom'
value = 0
[]
[top]
type = DirichletBC
variable = u
boundary = 'new_top'
value = 1
[]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
[]
[Outputs]
exodus = true
[]
(modules/contact/test/tests/bouncing-block-contact/frictional-nodal-min-normal-lm-mortar-fb-tangential-lm-mortar-disp.i)
starting_point = 2e-1
# We offset slightly so we avoid the case where the bottom of the secondary block and the top of the
# primary block are perfectly vertically aligned which can cause the backtracking line search some
# issues for a coarse mesh (basic line search handles that fine)
offset = 1e-2
[GlobalParams]
displacements = 'disp_x disp_y'
diffusivity = 1e0
scaling = 1e0
[]
[Mesh]
[./file_mesh]
type = FileMeshGenerator
file = long-bottom-block-1elem-blocks-coarse.e
[../]
[]
[Variables]
[./disp_x]
block = '1 2'
# order = SECOND
[../]
[./disp_y]
block = '1 2'
# order = SECOND
[../]
[./frictional_normal_lm]
block = 3
# family = MONOMIAL
# order = CONSTANT
[../]
[./frictional_tangential_lm]
block = 3
family = MONOMIAL
order = CONSTANT
[../]
[]
[ICs]
[./disp_y]
block = 2
variable = disp_y
value = ${fparse starting_point + offset}
type = ConstantIC
[../]
[]
[Kernels]
[./disp_x]
type = MatDiffusion
variable = disp_x
[../]
[./disp_y]
type = MatDiffusion
variable = disp_y
[../]
[]
[Constraints]
[frictional_normal_lm]
type = NormalNodalLMMechanicalContact
secondary = 10
primary = 20
variable = frictional_normal_lm
primary_variable = disp_x
disp_y = disp_y
ncp_function_type = min
[../]
[normal_x]
type = NormalMortarMechanicalContact
primary_boundary = 20
secondary_boundary = 10
primary_subdomain = 4
secondary_subdomain = 3
variable = frictional_normal_lm
secondary_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = false
[]
[normal_y]
type = NormalMortarMechanicalContact
primary_boundary = 20
secondary_boundary = 10
primary_subdomain = 4
secondary_subdomain = 3
variable = frictional_normal_lm
secondary_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = false
[]
[frictional_tangential_lm]
type = TangentialMortarLMMechanicalContact
primary_boundary = 20
secondary_boundary = 10
primary_subdomain = 4
secondary_subdomain = 3
variable = frictional_tangential_lm
secondary_variable = disp_x
secondary_disp_y = disp_y
use_displaced_mesh = true
compute_primal_residuals = false
contact_pressure = frictional_normal_lm
friction_coefficient = .1
ncp_function_type = fb
[]
[tangential_x]
type = TangentialMortarMechanicalContact
primary_boundary = 20
secondary_boundary = 10
primary_subdomain = 4
secondary_subdomain = 3
variable = frictional_tangential_lm
secondary_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = false
[]
[tangential_y]
type = TangentialMortarMechanicalContact
primary_boundary = 20
secondary_boundary = 10
primary_subdomain = 4
secondary_subdomain = 3
variable = frictional_tangential_lm
secondary_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = false
[]
[]
[BCs]
[./botx]
type = DirichletBC
variable = disp_x
boundary = 40
value = 0.0
[../]
[./boty]
type = DirichletBC
variable = disp_y
boundary = 40
value = 0.0
[../]
[./topy]
type = FunctionDirichletBC
variable = disp_y
boundary = 30
function = '${starting_point} * cos(2 * pi / 40 * t) + ${offset}'
[../]
[./leftx]
type = FunctionDirichletBC
variable = disp_x
boundary = 50
function = '1e-2 * t'
[../]
[]
[Executioner]
type = Transient
end_time = 200
dt = 5
dtmin = .1
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason -pc_svd_monitor -snes_linesearch_monitor -snes_ksp_ew'
petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount -mat_mffd_err'
petsc_options_value = 'lu NONZERO 1e-15 1e-5'
l_max_its = 30
nl_max_its = 20
line_search = 'none'
snesmf_reuse_base = false
# [./Predictor]
# type = SimplePredictor
# scale = 1.0
# [../]
[]
[Debug]
show_var_residual_norms = true
[]
[Outputs]
exodus = true
# checkpoint = true
# [./dofmap]
# type = DOFMap
# execute_on = 'initial'
# [../]
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Postprocessors]
[./num_nl]
type = NumNonlinearIterations
[../]
[./cumulative]
type = CumulativeValuePostprocessor
postprocessor = num_nl
[../]
[contact]
type = ContactDOFSetSize
variable = frictional_normal_lm
subdomain = '3'
execute_on = 'nonlinear timestep_end'
[]
[]
(modules/contact/test/tests/sliding_block/in_and_out/frictional_lm.i)
[Mesh]
patch_size = 80
[file]
type = FileMeshGenerator
file = sliding_elastic_blocks_2d.e
[]
[secondary]
input = file
type = LowerDBlockFromSidesetGenerator
sidesets = '3'
new_block_id = '30'
[]
[primary]
input = secondary
type = LowerDBlockFromSidesetGenerator
sidesets = '2'
new_block_id = '20'
[]
[]
[GlobalParams]
volumetric_locking_correction = false
displacements = 'disp_x disp_y'
[]
[Variables]
[normal_lm]
block = '30'
[]
[tangential_lm]
block = '30'
family = MONOMIAL
order = CONSTANT
[]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
boundary = 1
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
boundary = 1
value = 0.0
[../]
[./right_x]
type = FunctionDirichletBC
variable = disp_x
boundary = 4
function = horizontal_movement
[../]
[./right_y]
type = FunctionDirichletBC
variable = disp_y
boundary = 4
function = vertical_movement
[../]
[]
[Modules/TensorMechanics/Master]
[./all]
add_variables = true
strain = FINITE
block = '1 2'
[../]
[]
[Materials]
[./tensor]
type = ComputeIsotropicElasticityTensor
block = '1 2'
youngs_modulus = 1e6
poissons_ratio = 0.3
constant_on = SUBDOMAIN
[../]
[./stress]
type = ComputeFiniteStrainElasticStress
block = '1 2'
[../]
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason -snes_ksp_ew'
petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu 1e-5 NONZERO 1e-15'
end_time = 15
dt = 0.1
dtmin = 0.01
l_max_its = 30
nl_max_its = 20
nl_abs_tol = 1e-9
nl_rel_tol = 1e-9
line_search = 'none'
timestep_tolerance = 1e-6
snesmf_reuse_base = false
[./Predictor]
type = SimplePredictor
scale = 1.0
[../]
[]
[Debug]
show_var_residual_norms = true
[]
[Outputs]
sync_times = '1 2 3 4 5 6 7 8 9 10 11 12 13 14 15'
[out]
type = Exodus
sync_only = true
[]
[dof]
execute_on = 'initial'
type = DOFMap
[]
[csv]
type = CSV
execute_on = 'nonlinear timestep_end'
[]
[]
[Functions]
[./vertical_movement]
type = ParsedFunction
value = -t
[../]
[./horizontal_movement]
type = ParsedFunction
value = -0.04*sin(4*t)+0.02
[../]
[]
[Constraints]
[./lm]
type = NormalNodalLMMechanicalContact
secondary = 3
primary = 2
variable = normal_lm
primary_variable = disp_x
disp_y = disp_y
ncp_function_type = min
use_displaced_mesh = true
c = 1e6 # relative scale difference between pressure and gap
[../]
[normal_x]
type = NormalMortarMechanicalContact
primary_boundary = '2'
secondary_boundary = '3'
primary_subdomain = '20'
secondary_subdomain = '30'
variable = normal_lm
secondary_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = false
[]
[normal_y]
type = NormalMortarMechanicalContact
primary_boundary = '2'
secondary_boundary = '3'
primary_subdomain = '20'
secondary_subdomain = '30'
variable = normal_lm
secondary_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = false
[]
[tangential_lm]
type = TangentialMortarLMMechanicalContact
primary_boundary = '2'
secondary_boundary = '3'
primary_subdomain = '20'
secondary_subdomain = '30'
variable = tangential_lm
secondary_variable = disp_x
secondary_disp_y = disp_y
use_displaced_mesh = true
compute_primal_residuals = false
contact_pressure = normal_lm
friction_coefficient = .4
ncp_function_type = fb
c = 1000 # relative scale difference between pressure and velocity
[]
[tangential_x]
type = TangentialMortarMechanicalContact
primary_boundary = '2'
secondary_boundary = '3'
primary_subdomain = '20'
secondary_subdomain = '30'
variable = tangential_lm
secondary_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = false
[]
[tangential_y]
type = TangentialMortarMechanicalContact
primary_boundary = '2'
secondary_boundary = '3'
primary_subdomain = '20'
secondary_subdomain = '30'
variable = tangential_lm
secondary_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = false
[]
[]
[Postprocessors]
[./num_nl]
type = NumNonlinearIterations
[../]
[./cumulative]
type = CumulativeValuePostprocessor
postprocessor = num_nl
[../]
[lin]
type = NumLinearIterations
[]
[cum_lin]
type = CumulativeValuePostprocessor
postprocessor = lin
[]
[contact]
type = ContactDOFSetSize
variable = normal_lm
subdomain = '30'
execute_on = 'nonlinear timestep_end'
[]
[]
(modules/peridynamics/test/tests/mesh/2D_convert_all_retain.i)
[Mesh]
type = PeridynamicsMesh
horizon_number = 3
[./fmg]
type = FileMeshGenerator
file = 2D_2blocks.e
[../]
[./gpd]
type = MeshGeneratorPD
input = fmg
retain_fe_mesh = true
blocks_to_pd = '1 2'
[../]
[]
# This input file is intended to be run with the "--mesh-only" option so
# no other sections are required
(test/tests/mesh_modifiers/add_extra_nodeset/extra_nodeset_test.i)
[Mesh]
[file]
type = FileMeshGenerator
file = square.e
[]
[middle_node]
type = ExtraNodesetGenerator
input = file
new_boundary = 'middle_node'
nodes = '2'
[]
[]
[Variables]
active = 'u'
[u]
order = FIRST
family = LAGRANGE
[]
[]
[Kernels]
active = 'diff'
[diff]
type = Diffusion
variable = u
[]
[]
[BCs]
active = 'left right middle'
[left]
type = DirichletBC
variable = u
boundary = 1
value = 0
[]
[right]
type = DirichletBC
variable = u
boundary = 2
value = 1
[]
[middle]
type = DirichletBC
variable = u
boundary = 'middle_node'
value = -1
[]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
[]
[Outputs]
file_base = out
exodus = true
[]
(test/tests/restart/scalar-var/part2.i)
[Mesh]
[fmg]
type = FileMeshGenerator
file = part1_out.e
use_for_exodus_restart = true
[]
[]
[Variables]
[v]
family = MONOMIAL
order = CONSTANT
fv = true
initial_from_file_var = v
[]
[lambda]
family = SCALAR
order = FIRST
initial_from_file_var = lambda
[]
[]
[FVKernels]
[advection]
type = FVElementalAdvection
variable = v
velocity = '1 0 0'
[]
[lambda]
type = FVScalarLagrangeMultiplier
variable = v
lambda = lambda
phi0 = 1
[]
[]
[Problem]
kernel_coverage_check = off
[]
[Executioner]
type = Steady
petsc_options_iname = '-snes_max_it'
petsc_options_value = '0'
nl_abs_tol = 1e-10
[]
[Outputs]
[out]
type = Exodus
execute_on = 'final'
[]
[]
(test/tests/mortar/continuity-2d-conforming/equalgradient.i)
[Mesh]
[file]
type = FileMeshGenerator
file = 2blk-conf.e
[]
[secondary]
input = file
type = LowerDBlockFromSidesetGenerator
sidesets = '101'
new_block_id = '10001'
new_block_name = 'secondary_lower'
[]
[primary]
input = secondary
type = LowerDBlockFromSidesetGenerator
sidesets = '100'
new_block_id = '10000'
new_block_name = 'primary_lower'
[]
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
block = '1 2'
[../]
[./lmx]
order = FIRST
family = LAGRANGE
block = 'secondary_lower'
[../]
[./lmy]
order = FIRST
family = LAGRANGE
block = 'secondary_lower'
[../]
[]
[ICs]
[./block1]
type = FunctionIC
variable = u
block = 1
function = y
[../]
[./block2]
type = FunctionIC
variable = u
block = 2
function = y-0.5
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[./dt]
type = TimeDerivative
variable = u
[../]
[]
[Constraints]
[./cedx]
type = EqualGradientConstraint
secondary_variable = u
variable = lmx
primary_boundary = 100
primary_subdomain = 10000
secondary_boundary = 101
secondary_subdomain = 10001
component = 0
[../]
[./cedy]
type = EqualGradientConstraint
secondary_variable = u
variable = lmy
primary_boundary = 100
primary_subdomain = 10000
secondary_boundary = 101
secondary_subdomain = 10001
component = 1
[../]
[]
[BCs]
[./all]
type = DiffusionFluxBC
variable = u
boundary = '2 4 100 101'
[../]
[./boundary]
type = DirichletBC
boundary = 1
variable = u
value = 0.0
[../]
[./top]
type = FunctionDirichletBC
boundary = 3
variable = u
function = 0.5-t
[../]
[]
[Preconditioning]
[./fmp]
type = SMP
full = true
solve_type = 'NEWTON'
[../]
[]
[Executioner]
type = Transient
nl_rel_tol = 1e-11
l_tol = 1e-10
l_max_its = 10
dt = 0.05
num_steps = 3
[]
[Outputs]
exodus = true
print_linear_residuals = false
[]
(test/tests/mesh_modifiers/mesh_extruder/extruder_angle.i)
[Mesh]
[file]
type = FileMeshGenerator
file = chimney_quad.e
[]
[extrude]
type = MeshExtruderGenerator
input = file
num_layers = 20
extrusion_vector = '1e-2 1e-2 0'
bottom_sideset = '10'
top_sideset = '20'
[]
[]
[Variables]
[u]
order = FIRST
family = LAGRANGE
[]
[]
[Kernels]
[diff]
type = Diffusion
variable = u
[]
[]
[BCs]
[bottom]
type = DirichletBC
variable = u
boundary = 10
value = 0
[]
[top]
type = DirichletBC
variable = u
boundary = 20
value = 1
[]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
[]
[Outputs]
file_base = out_quad_angle
exodus = true
[]
(modules/peridynamics/test/tests/auxkernels/boundary_offset_node_volume_3D.i)
[GlobalParams]
displacements = 'disp_x disp_y disp_z'
[]
[Mesh]
type = PeridynamicsMesh
horizon_number = 3
[./fmg]
type = FileMeshGenerator
file = 3D_cube.e
[../]
[./mgpd]
type = MeshGeneratorPD
input = fmg
retain_fe_mesh = false
[../]
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[./disp_z]
[../]
[]
[AuxVariables]
[./gap_offset]
[../]
[./node_volume]
[../]
[]
[AuxKernels]
[./gap_offset]
type = BoundaryOffsetPD
variable = gap_offset
[../]
[./node_volume]
type = NodalVolumePD
variable = node_volume
[../]
[]
[Modules/Peridynamics/Mechanics/Master]
[./blk1]
formulation = BOND
[../]
[]
[Materials]
[./elasticity_tensor]
type = ComputeIsotropicElasticityTensor
youngs_modulus = 1e6
poissons_ratio = 0.3
[../]
[./material_pd]
type = ComputeSmallStrainVariableHorizonMaterialBPD
[../]
[]
[BCs]
[./fix_x]
type = DirichletBC
variable = disp_x
boundary = 1001
value = 0
[../]
[./fix_y]
type = DirichletBC
variable = disp_y
boundary = 1001
value = 0
[../]
[./fix_z]
type = DirichletBC
variable = disp_z
boundary = 1001
value = 0
[../]
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
end_time = 1
[]
[Outputs]
exodus = true
[]
(modules/navier_stokes/test/tests/finite_volume/cns/stagnation_inlet/supersonic_nozzle_hllc.i)
stagnation_pressure = 1
stagnation_temperature = 1
[GlobalParams]
fp = fp
[]
[Debug]
show_material_props = true
[]
[Mesh]
[file]
type = FileMeshGenerator
file = supersonic_nozzle.e
[]
[]
[Modules]
[FluidProperties]
[fp]
type = IdealGasFluidProperties
[]
[]
[]
[Variables]
[rho]
family = MONOMIAL
order = CONSTANT
fv = true
initial_condition = 0.0034
[]
[rho_u]
family = MONOMIAL
order = CONSTANT
fv = true
initial_condition = 1e-4
outputs = none
[]
[rho_v]
family = MONOMIAL
order = CONSTANT
fv = true
outputs = none
[]
[rho_E]
family = MONOMIAL
order = CONSTANT
fv = true
initial_condition = 2.5
[]
[]
[FVKernels]
# Mass conservation
[mass_time]
type = FVTimeKernel
variable = rho
[]
[mass_advection]
type = CNSFVMassHLLC
variable = rho
[]
# Momentum x conservation
[momentum_x_time]
type = FVTimeKernel
variable = rho_u
[]
[momentum_x_advection]
type = CNSFVMomentumHLLC
variable = rho_u
momentum_component = x
[]
# Momentum y conservation
[momentum_y_time]
type = FVTimeKernel
variable = rho_v
[]
[momentum_y_advection]
type = CNSFVMomentumHLLC
variable = rho_v
momentum_component = y
[]
# Fluid energy conservation
[fluid_energy_time]
type = FVTimeKernel
variable = rho_E
[]
[fluid_energy_advection]
type = CNSFVFluidEnergyHLLC
variable = rho_E
[]
[]
[FVBCs]
## inflow stagnation boundaries
[mass_stagnation_inflow]
type = CNSFVHLLCMassStagnationInletBC
variable = rho
stagnation_pressure = ${stagnation_pressure}
stagnation_temperature = ${stagnation_temperature}
boundary = left
[]
[momentum_x_stagnation_inflow]
type = CNSFVHLLCMomentumStagnationInletBC
variable = rho_u
momentum_component = x
stagnation_pressure = ${stagnation_pressure}
stagnation_temperature = ${stagnation_temperature}
boundary = left
[]
[momentum_y_stagnation_inflow]
type = CNSFVHLLCMomentumStagnationInletBC
variable = rho_v
momentum_component = y
stagnation_pressure = ${stagnation_pressure}
stagnation_temperature = ${stagnation_temperature}
boundary = left
[../]
[fluid_energy_stagnation_inflow]
type = CNSFVHLLCFluidEnergyStagnationInletBC
variable = rho_E
stagnation_pressure = ${stagnation_pressure}
stagnation_temperature = ${stagnation_temperature}
boundary = left
[]
## outflow implicit conditions
[mass_outflow]
type = CNSFVHLLCMassImplicitBC
variable = rho
boundary = right
[]
[momentum_x_outflow]
type = CNSFVHLLCMomentumImplicitBC
variable = rho_u
momentum_component = x
boundary = right
[]
[momentum_y_outflow]
type = CNSFVHLLCMomentumImplicitBC
variable = rho_v
momentum_component = y
boundary = right
[]
[fluid_energy_outflow]
type = CNSFVHLLCFluidEnergyImplicitBC
variable = rho_E
boundary = right
[]
# wall conditions
[momentum_x_pressure_wall]
type = CNSFVMomImplicitPressureBC
variable = rho_u
momentum_component = x
boundary = wall
[]
[momentum_y_pressure_wall]
type = CNSFVMomImplicitPressureBC
variable = rho_v
momentum_component = y
boundary = wall
[]
[]
[AuxVariables]
[Ma]
family = MONOMIAL
order = CONSTANT
[]
[Ma_layered]
family = MONOMIAL
order = CONSTANT
[]
[]
[UserObjects]
[layered_Ma_UO]
type = LayeredAverage
variable = Ma
num_layers = 100
direction = x
[]
[]
[AuxKernels]
[Ma_aux]
type = NSMachAux
variable = Ma
fluid_properties = fp
use_material_properties = true
[]
[Ma_layered_aux]
type = SpatialUserObjectAux
variable = Ma_layered
user_object = layered_Ma_UO
[]
[]
[Materials]
[var_mat]
type = ConservedVarValuesMaterial
rho = rho
rhou = rho_u
rhov = rho_v
rho_et = rho_E
[]
[fluid_props]
type = GeneralFluidProps
porosity = 1
characteristic_length = 1
[]
[sound_speed]
type = SoundspeedMat
fp = fp
[]
[]
[Postprocessors]
[cfl_dt]
type = ADCFLTimeStepSize
c_names = 'sound_speed'
vel_names = 'speed'
CFL = 0.5
[]
[outflow_Ma]
type = SideAverageValue
variable = Ma
boundary = right
[]
[]
[Preconditioning]
[smp]
type = SMP
full = true
petsc_options_iname = '-pc_type'
petsc_options_value = 'lu'
[]
[]
[Executioner]
type = Transient
end_time = 0.1
[TimeIntegrator]
type = ExplicitSSPRungeKutta
order = 2
[]
l_tol = 1e-8
[TimeStepper]
type = PostprocessorDT
postprocessor = cfl_dt
[]
[]
[VectorPostprocessors]
[Ma_layered]
type = LineValueSampler
variable = Ma_layered
start_point = '0 0 0'
end_point = '10 0 0'
num_points = 100
sort_by = x
[]
[]
[Outputs]
exodus = true
[]
(test/tests/meshgenerators/sidesets_from_normals_generator/sidesets_cylinder_normals_fixed.i)
[Mesh]
[./fmg]
type = FileMeshGenerator
file = cylinder.e
#parallel_type = replicated
[]
[./sidesets]
type = SideSetsFromNormalsGenerator
input = fmg
normals = '0 1 0
0 -1 0'
fixed_normal = true
new_boundary = 'front back'
variance = 0.5
[]
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./front]
type = DirichletBC
variable = u
boundary = front
value = 0
[../]
[./back]
type = DirichletBC
variable = u
boundary = back
value = 1
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(test/tests/mortar/gap-conductance-2d-non-conforming/gap-conductance.i)
[Mesh]
[file]
type = FileMeshGenerator
file = nodal_normals_test_offset_nonmatching_gap.e
[]
[./primary]
input = file
type = LowerDBlockFromSidesetGenerator
sidesets = '2'
new_block_id = '20'
[../]
[./secondary]
input = primary
type = LowerDBlockFromSidesetGenerator
sidesets = '1'
new_block_id = '10'
[../]
[]
[Problem]
kernel_coverage_check = false
[]
[Variables]
[./T]
block = '1 2'
[../]
[./lambda]
block = '10'
[../]
[]
[BCs]
[./neumann]
type = FunctionGradientNeumannBC
exact_solution = exact_soln
variable = T
boundary = '3 4 5 6 7 8'
[../]
[]
[Kernels]
[./conduction]
type = Diffusion
variable = T
block = '1 2'
[../]
[./sink]
type = Reaction
variable = T
block = '1 2'
[../]
[./forcing_function]
type = BodyForce
variable = T
function = forcing_function
block = '1 2'
[../]
[]
[Functions]
[./forcing_function]
type = ParsedFunction
value = '-4 + x^2 + y^2'
[../]
[./exact_soln]
type = ParsedFunction
value = 'x^2 + y^2'
[../]
[]
[Debug]
show_var_residual_norms = 1
[]
[Constraints]
[./mortar]
type = GapHeatConductanceTest
primary_boundary = 2
secondary_boundary = 1
primary_subdomain = 20
secondary_subdomain = 10
variable = lambda
secondary_variable = T
[../]
[]
[Materials]
[constant]
type = ADGenericConstantMaterial
prop_names = 'gap_conductance'
prop_values = '.03'
block = '1 2'
[]
[./ssm]
type = SpatialStatefulMaterial
block = '1 2'
[../]
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Executioner]
solve_type = NEWTON
type = Steady
petsc_options_iname = '-pc_type -snes_linesearch_type'
petsc_options_value = 'lu basic'
[]
[Outputs]
exodus = true
[dofmap]
type = DOFMap
execute_on = 'initial'
[]
[]
(test/tests/meshgenerators/fancy_extruder_generator/fancy_extruder_with_element_extra_integer_swap.i)
[Problem]
solve = false
[]
[Mesh]
[./fg]
type = FileMeshGenerator
file = mesh_2d.e
exodus_extra_element_integers = 'element_extra_integer_1 element_extra_integer_2'
[]
[./extrude]
type = FancyExtruderGenerator
input = fg
heights = '1 2 3'
num_layers = '1 2 3'
direction = '0 0 1'
elem_integer_names_to_swap = 'element_extra_integer_1 element_extra_integer_2'
elem_integers_swaps = '1 4 2 8;
2 7;
1 6;
1 8 2 4;
2 5;
1 6'
[]
[]
[AuxVariables]
[element_extra_integer_1]
family = MONOMIAL
order = CONSTANT
[]
[element_extra_integer_2]
family = MONOMIAL
order = CONSTANT
[]
[]
[AuxKernels]
[element_extra_integer_1]
type = ElemExtraIDAux
variable = element_extra_integer_1
extra_id_name = element_extra_integer_1
execute_on = 'initial'
[]
[element_extra_integer_2]
type = ElemExtraIDAux
variable = element_extra_integer_2
extra_id_name = element_extra_integer_2
execute_on = 'initial'
[]
[]
[Executioner]
type = Steady
[]
[Outputs]
exodus = true
execute_on = final
[]
(test/tests/mesh_modifiers/add_side_sets/cylinder_points.i)
[Mesh]
[file]
type = FileMeshGenerator
file = cylinder.e
[]
# Mesh Modifiers
[add_side_sets]
type = SideSetsFromPointsGenerator
input = file
points = '0 0 0.5
0.1 0 0
0 0 -0.5'
new_boundary = 'top side bottom'
[]
[]
[Variables]
[u]
[]
[]
[Kernels]
[diff]
type = Diffusion
variable = u
[]
[]
[BCs]
[bottom]
type = DirichletBC
variable = u
boundary = bottom
value = 0
[]
[top]
type = DirichletBC
variable = u
boundary = top
value = 1
[]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(test/tests/meshgenerators/sidesets_by_normals_generator/simple.i)
[Mesh]
[./fmg]
type = FileMeshGenerator
file = twoblocks.e
[]
[./generate_sidesets]
type = AllSideSetsByNormalsGenerator
input = fmg
[]
[]
[Outputs]
exodus = true
[]
(modules/peridynamics/test/tests/mesh/2D_sidesets_partial_boundary.i)
[Mesh]
type = PeridynamicsMesh
horizon_number = 3
[./fmg]
type = FileMeshGenerator
file = disk.e
[../]
[./mgpd]
type = MeshGeneratorPD
input = fmg
retain_fe_mesh = false
construct_pd_sidesets = true
[../]
[]
(modules/contact/test/tests/mechanical-small-problem/mortar-mech.i)
[Mesh]
displacements = 'disp_x disp_y'
[file]
type = FileMeshGenerator
file = mesh.e
[]
[./primary]
type = LowerDBlockFromSidesetGenerator
sidesets = '2'
new_block_id = '20'
input = file
[../]
[./secondary]
type = LowerDBlockFromSidesetGenerator
sidesets = '1'
new_block_id = '10'
input = primary
[../]
[]
[Problem]
kernel_coverage_check = false
[]
[Variables]
[./disp_x]
block = '1 2'
[../]
[./disp_y]
block = '1 2'
[../]
[./lambda]
block = '10'
family = MONOMIAL
order = CONSTANT
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
boundary = 'outside_left'
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
boundary = 'outside_left'
value = 0.0
[../]
[./right_x]
type = FunctionDirichletBC
variable = disp_x
boundary = 'outside_right'
function = '-5e-3 * t'
[../]
[./right_y]
type = FunctionDirichletBC
variable = disp_y
boundary = 'outside_right'
function = 0
[../]
[]
[Kernels]
[disp_x]
type = Diffusion
variable = disp_x
block = '1 2'
[]
[disp_y]
type = Diffusion
variable = disp_y
block = '1 2'
[]
[]
[Debug]
show_var_residual_norms = 1
[]
[Constraints]
[lm]
type = NormalMortarLMMechanicalContact
primary_boundary = '2'
secondary_boundary = '1'
primary_subdomain = '20'
secondary_subdomain = '10'
variable = lambda
secondary_variable = disp_x
secondary_disp_y = disp_y
use_displaced_mesh = true
compute_primal_residuals = false
[]
[x]
type = NormalMortarMechanicalContact
primary_boundary = '2'
secondary_boundary = '1'
primary_subdomain = '20'
secondary_subdomain = '10'
variable = lambda
secondary_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = false
[]
[y]
type = NormalMortarMechanicalContact
primary_boundary = '2'
secondary_boundary = '1'
primary_subdomain = '20'
secondary_subdomain = '10'
variable = lambda
secondary_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = false
[]
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Executioner]
solve_type = PJFNK
type = Transient
num_steps = 10
dt = 1
dtmin = 1
petsc_options_iname = '-pc_type -snes_linesearch_type -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu basic NONZERO 1e-15'
[]
[Outputs]
exodus = true
[dofmap]
type = DOFMap
execute_on = 'initial'
[]
[]
(test/tests/mesh_modifiers/break_mesh_by_blocks/3D/TestBreakMesh_3D_3Block_Auto.i)
[Mesh]
[file]
type = FileMeshGenerator
file = coh3D_3Blocks.e
[]
[breakmesh]
type = BreakMeshByBlockGenerator
input = file
[]
[]
# This input file is intended to be run with the "--mesh-only" option so
# no other sections are required
(modules/peridynamics/test/tests/mesh/Error_nonexisting_sideset.i)
[Mesh]
type = PeridynamicsMesh
horizon_number = 3
[./fmg]
type = FileMeshGenerator
file = disk.e
[../]
[./mgpd]
type = MeshGeneratorPD
input = fmg
retain_fe_mesh = false
construct_pd_sidesets = true
sidesets_to_pd = '3'
[../]
[]
(modules/contact/test/tests/bouncing-block-contact/frictional-nodal-min-normal-lm-mortar-pdass-tangential-lm-mortar-action.i)
starting_point = 2e-1
# We offset slightly so we avoid the case where the bottom of the secondary block and the top of the
# primary block are perfectly vertically aligned which can cause the backtracking line search some
# issues for a coarse mesh (basic line search handles that fine)
offset = 1e-2
[GlobalParams]
displacements = 'disp_x disp_y'
diffusivity = 1e0
scaling = 1e0
[]
[Mesh]
[original_file_mesh]
type = FileMeshGenerator
file = long-bottom-block-1elem-blocks-coarse.e
[]
# These sidesets need to be deleted because the contact action adds them automatically. For this
# particular mesh, the new IDs will be identical to the deleted ones and will conflict if we don't
# remove the original ones.
[delete_3]
type = BlockDeletionGenerator
input = original_file_mesh
block = 3
[]
[revised_file_mesh]
type = BlockDeletionGenerator
input = delete_3
block = 4
[]
[]
[Variables]
[disp_x]
block = '1 2'
# order = SECOND
[]
[disp_y]
block = '1 2'
# order = SECOND
[]
[]
[Contact]
[frictional]
mesh = revised_file_mesh
primary = 20
secondary = 10
formulation = mortar
model = coulomb
friction_coefficient = 0.1
c_normal = 1.0e-2
c_tangential = 1.0e-1
[]
[]
[ICs]
[disp_y]
block = 2
variable = disp_y
value = '${fparse starting_point + offset}'
type = ConstantIC
[]
[]
[Kernels]
[disp_x]
type = MatDiffusion
variable = disp_x
[]
[disp_y]
type = MatDiffusion
variable = disp_y
[]
[]
[BCs]
[botx]
type = DirichletBC
variable = disp_x
boundary = 40
value = 0.0
[]
[boty]
type = DirichletBC
variable = disp_y
boundary = 40
value = 0.0
[]
[topy]
type = FunctionDirichletBC
variable = disp_y
boundary = 30
function = '${starting_point} * cos(2 * pi / 40 * t) + ${offset}'
[]
[leftx]
type = FunctionDirichletBC
variable = disp_x
boundary = 50
function = '1e-2 * t'
[]
[]
[Executioner]
type = Transient
end_time = 200
dt = 5
dtmin = .1
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason -pc_svd_monitor '
'-snes_linesearch_monitor -snes_ksp_ew'
petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount -mat_mffd_err'
petsc_options_value = 'lu NONZERO 1e-15 1e-5'
l_max_its = 30
nl_max_its = 20
line_search = 'none'
[]
[Debug]
show_var_residual_norms = true
[]
[Outputs]
exodus = true
hide = 'contact_pressure nodal_area_frictional penetration'
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
[Postprocessors]
[num_nl]
type = NumNonlinearIterations
[]
[cumulative]
type = CumulativeValuePostprocessor
postprocessor = num_nl
[]
[contact]
type = ContactDOFSetSize
variable = frictional_normal_lm
subdomain = frictional_secondary_subdomain
execute_on = 'nonlinear timestep_end'
[]
[]
(test/tests/meshgenerators/break_mesh_by_block_generator/break_mesh_2DJunction_polycrystal.i)
[Mesh]
[./fmg]
type = FileMeshGenerator
file = poly.msh
#parallel_type = replicated
[]
[./breakmesh]
type = BreakMeshByBlockGenerator
input = fmg
split_interface = true
[]
[]
[Outputs]
exodus = true
[]
(modules/contact/test/tests/fieldsplit/frictional_mortar_FS.i)
offset = 0.021
vy = 0.15
vx = 0.04
refine = 1
[GlobalParams]
displacements = 'disp_x disp_y'
volumetric_locking_correction = true
[]
[Mesh]
[original_file_mesh]
type = FileMeshGenerator
file = long_short_blocks.e
[]
uniform_refine = ${refine}
[]
[Modules/TensorMechanics/Master]
[all]
strain = FINITE
incremental = true
add_variables = true
block = '1 2'
[]
[]
[Functions]
[horizontal_movement]
type = ParsedFunction
value = 'if(t<0.5,${vx}*t-${offset},${vx}-${offset})'
[]
[vertical_movement]
type = ParsedFunction
value = 'if(t<0.5,${offset},${vy}*(t-0.5)+${offset})'
[]
[]
[BCs]
[push_left_x]
type = FunctionDirichletBC
variable = disp_x
boundary = 30
function = horizontal_movement
[]
[fix_right_x]
type = DirichletBC
variable = disp_x
boundary = 40
value = 0.0
[]
[fix_right_y]
type = DirichletBC
variable = disp_y
boundary = '40'
value = 0.0
[]
[push_left_y]
type = FunctionDirichletBC
variable = disp_y
boundary = '30'
function = vertical_movement
[]
[]
[Materials]
[elasticity_tensor_left]
type = ComputeIsotropicElasticityTensor
block = 1
youngs_modulus = 1.0e6
poissons_ratio = 0.3
[]
[stress_left]
type = ComputeFiniteStrainElasticStress
block = 1
[]
[elasticity_tensor_right]
type = ComputeIsotropicElasticityTensor
block = 2
youngs_modulus = 1.0e6
poissons_ratio = 0.3
[]
[stress_right]
type = ComputeFiniteStrainElasticStress
block = 2
[]
[]
[Contact]
[leftright]
mesh = original_file_mesh
secondary = 10
primary = 20
model = coulomb
formulation = mortar
friction_coefficient = 0.2
mortar_approach = legacy
c_normal = 1e0
[]
[]
[ICs]
[disp_y]
block = 1
variable = disp_y
value = ${offset}
type = ConstantIC
[]
[disp_x]
block = 1
variable = disp_x
value = -${offset}
type = ConstantIC
[]
[]
[Preconditioning]
[FSP]
type = FSP
# It is the starting point of splitting
topsplit = 'contact_interior' # 'contact_interior' should match the following block name
[contact_interior]
splitting = 'contact interior'
splitting_type = multiplicative
[]
[interior]
type = ContactSplit
vars = 'disp_x disp_y'
uncontact_primary = '20'
uncontact_secondary = '10'
uncontact_displaced = '30'
blocks = '1 2'
include_all_contact_nodes = 1
petsc_options_iname = '-ksp_type -pc_type -pc_hypre_type '
petsc_options_value = ' preonly hypre boomeramg'
[]
[contact]
type = ContactSplit
vars = 'disp_x disp_y leftright_normal_lm leftright_tangential_lm'
contact_primary = '20'
contact_secondary = '10'
contact_displaced = '30'
include_all_contact_nodes = 1
blocks = '4'
petsc_options_iname = '-ksp_type -pc_sub_type -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = ' preonly lu NONZERO 1e-15'
[]
[]
[]
[Executioner]
type = Transient
solve_type = 'NEWTON'
dt = 0.1
dtmin = 1e-4
end_time = 1
l_tol = 1e-8
l_max_its = 100
nl_rel_tol = 1e-8
nl_abs_tol = 1e-8
nl_max_its = 10
[]
[Outputs]
file_base = frictional_mortar_FS_out
[exodus]
type = Exodus
[]
[console]
type = Console
max_rows = 5
[]
[]
(modules/heat_conduction/test/tests/meshed_gap_thermal_contact/meshed_gap_thermal_contact_constant_conductance.i)
[Mesh]
[fmesh]
type = FileMeshGenerator
file = meshed_gap.e
[]
[block0]
type = SubdomainBoundingBoxGenerator
input = fmesh
bottom_left = '.5 -.5 0'
top_right = '.7 .5 0'
block_id = 4
[]
[]
[Variables]
[./temp]
block = '1 3'
initial_condition = 1.0
[../]
[]
[Kernels]
[./hc]
type = HeatConduction
variable = temp
block = '1 3'
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = temp
boundary = 1
value = 1
[../]
[./right]
type = DirichletBC
variable = temp
boundary = 4
value = 2
[../]
[]
[ThermalContact]
[./gap_conductance]
type = GapHeatTransfer
variable = temp
primary = 2
secondary = 3
emissivity_primary = 0
emissivity_secondary = 0
gap_conductance = 2.5
[../]
[]
[Materials]
[./hcm]
type = HeatConductionMaterial
block = '1 3'
temp = temp
thermal_conductivity = 1
[../]
[]
[Problem]
type = FEProblem
kernel_coverage_check = false
material_coverage_check = false
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
[./out]
type = Exodus
[../]
[]
(modules/heat_conduction/test/tests/gap_heat_transfer_htonly/planar_yz.i)
# 1-D Gap Heat Transfer Test without mechanics
#
# This test exercises 1-D gap heat transfer for a constant conductivity gap.
#
# The mesh consists of two element blocks in the y-z plane. Each element block
# is a square. They sit next to one another with a unit between them.
#
# The conductivity of both blocks is set very large to achieve a uniform temperature
# across each block. The temperature of the far bottom boundary
# is ramped from 100 to 200 over one time unit. The temperature of the far top
# boundary is held fixed at 100.
#
# A simple analytical solution is possible for the heat flux between the blocks:
#
# Flux = (T_left - T_right) * (gapK/gap_width)
#
# The gap conductivity is specified as 1, thus
#
# gapK(Tavg) = 1.0*Tavg
#
# The heat flux across the gap at time = 1 is then:
#
# Flux = 100 * (1.0/1.0) = 100
#
# For comparison, see results from the flux post processors. These results
# are the same as for the unit 1-D gap heat transfer between two unit cubes.
[Mesh]
[file]
type = FileMeshGenerator
file = simple_2D.e
[]
[./rotate]
type = TransformGenerator
transform = ROTATE
vector_value = '0 90 90'
input = file
[../]
[]
[Functions]
[./temp]
type = PiecewiseLinear
x = '0 1 2'
y = '100 200 200'
[../]
[]
[ThermalContact]
[./thermal_contact]
type = GapHeatTransfer
variable = temp
primary = 3
secondary = 2
emissivity_primary = 0
emissivity_secondary = 0
[../]
[]
[Variables]
[./temp]
order = FIRST
family = LAGRANGE
initial_condition = 100
[../]
[]
[AuxVariables]
[./gap_cond]
order = CONSTANT
family = MONOMIAL
[../]
[]
[Kernels]
[./heat]
type = HeatConduction
variable = temp
[../]
[]
[BCs]
[./temp_far_bottom]
type = FunctionDirichletBC
boundary = 1
variable = temp
function = temp
[../]
[./temp_far_top]
type = DirichletBC
boundary = 4
variable = temp
value = 100
[../]
[]
[AuxKernels]
[./conductance]
type = MaterialRealAux
property = gap_conductance
variable = gap_cond
boundary = 2
[../]
[]
[Materials]
[./heat1]
type = HeatConductionMaterial
block = '1 2'
specific_heat = 1.0
thermal_conductivity = 100000000.0
[../]
[./density]
type = GenericConstantMaterial
block = '1 2'
prop_names = 'density'
prop_values = '1.0'
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
petsc_options_value = '201 hypre boomeramg 4'
line_search = 'none'
nl_rel_tol = 1e-12
l_tol = 1e-3
l_max_its = 100
dt = 1e-1
end_time = 1.0
[]
[Postprocessors]
[./temp_bottom]
type = SideAverageValue
boundary = 2
variable = temp
execute_on = 'initial timestep_end'
[../]
[./temp_top]
type = SideAverageValue
boundary = 3
variable = temp
execute_on = 'initial timestep_end'
[../]
[./flux_bottom]
type = SideDiffusiveFluxIntegral
variable = temp
boundary = 2
diffusivity = thermal_conductivity
execute_on = 'initial timestep_end'
[../]
[./flux_top]
type = SideDiffusiveFluxIntegral
variable = temp
boundary = 3
diffusivity = thermal_conductivity
execute_on = 'initial timestep_end'
[../]
[]
[Outputs]
exodus = true
[]
(test/tests/meshgenerators/stitched_mesh_generator/stitched_mesh_generator.i)
[Mesh]
[./fmg_left]
type = FileMeshGenerator
file = left.e
[]
[./fmg_center]
type = FileMeshGenerator
file = center.e
[]
[./fmg_right]
type = FileMeshGenerator
file = right.e
[]
[./smg]
type = StitchedMeshGenerator
inputs = 'fmg_left fmg_center fmg_right'
clear_stitched_boundary_ids = true
stitch_boundaries_pairs = 'right left;
right left'
parallel_type = 'replicated'
[]
[]
[Outputs]
exodus = true
[]
(modules/navier_stokes/test/tests/postprocessors/conservation_PINSFV.i)
mu=1.1
rho=1
advected_interp_method='average'
velocity_interp_method='average'
[Mesh]
inactive = 'mesh internal_boundary_bot internal_boundary_top'
[mesh]
type = CartesianMeshGenerator
dim = 2
dx = '1'
dy = '1 1 1'
ix = '5'
iy = '5 5 5'
subdomain_id = '1
2
3'
[]
[internal_boundary_bot]
type = SideSetsBetweenSubdomainsGenerator
input = mesh
new_boundary = 'internal_bot'
primary_block = 1
paired_block = 2
[]
[internal_boundary_top]
type = SideSetsBetweenSubdomainsGenerator
input = internal_boundary_bot
new_boundary = 'internal_top'
primary_block = 2
paired_block = 3
[]
[diverging_mesh]
type = FileMeshGenerator
file = 'expansion_quad.e'
[]
[]
[Problem]
kernel_coverage_check = false
fv_bcs_integrity_check = true
[]
[GlobalParams]
two_term_boundary_expansion = true
[]
[Variables]
[u]
type = PINSFVSuperficialVelocityVariable
initial_condition = 0
[]
[v]
type = PINSFVSuperficialVelocityVariable
initial_condition = 1
[]
[pressure]
type = INSFVPressureVariable
[]
[temperature]
type = INSFVEnergyVariable
[]
[]
[AuxVariables]
[advected_density]
order = CONSTANT
family = MONOMIAL
fv = true
initial_condition = ${rho}
[]
[porosity]
order = CONSTANT
family = MONOMIAL
fv = true
initial_condition = 0.5
[]
[]
[FVKernels]
[mass]
type = PINSFVMassAdvection
variable = pressure
advected_interp_method = ${advected_interp_method}
velocity_interp_method = ${velocity_interp_method}
vel = 'velocity'
pressure = pressure
u = u
v = v
mu = ${mu}
rho = ${rho}
porosity = porosity
[]
[u_advection]
type = PINSFVMomentumAdvection
variable = u
advected_quantity = 'rhou'
vel = 'velocity'
advected_interp_method = ${advected_interp_method}
velocity_interp_method = ${velocity_interp_method}
pressure = pressure
u = u
v = v
mu = ${mu}
rho = ${rho}
porosity = porosity
[]
[u_viscosity]
type = PINSFVMomentumDiffusion
variable = u
force_boundary_execution = true
porosity = porosity
mu = ${mu}
[]
[u_pressure]
type = PINSFVMomentumPressure
variable = u
momentum_component = 'x'
pressure = pressure
porosity = porosity
[]
[v_advection]
type = PINSFVMomentumAdvection
variable = v
advected_quantity = 'rhov'
vel = 'velocity'
advected_interp_method = ${advected_interp_method}
velocity_interp_method = ${velocity_interp_method}
pressure = pressure
u = u
v = v
mu = ${mu}
rho = ${rho}
porosity = porosity
[]
[v_viscosity]
type = PINSFVMomentumDiffusion
variable = v
force_boundary_execution = true
porosity = porosity
mu = ${mu}
[]
[v_pressure]
type = PINSFVMomentumPressure
variable = v
momentum_component = 'y'
pressure = pressure
porosity = porosity
[]
[temp_advection]
type = PINSFVEnergyAdvection
vel = 'velocity'
variable = temperature
advected_interp_method = ${advected_interp_method}
velocity_interp_method = ${velocity_interp_method}
pressure = pressure
u = u
v = v
mu = ${mu}
rho = ${rho}
porosity = porosity
[]
[temp_source]
type = FVBodyForce
variable = temperature
function = 10
block = 1
[]
[]
[FVBCs]
inactive = 'noslip-u noslip-v'
[inlet-u]
type = INSFVInletVelocityBC
boundary = 'bottom'
variable = u
function = 0
[]
[inlet-v]
type = INSFVInletVelocityBC
boundary = 'bottom'
variable = v
function = 1
[]
[noslip-u]
type = INSFVNoSlipWallBC
boundary = 'right'
variable = u
function = 0
[]
[noslip-v]
type = INSFVNoSlipWallBC
boundary = 'right'
variable = v
function = 0
[]
[free-slip-u]
type = INSFVNaturalFreeSlipBC
boundary = 'right'
variable = u
[]
[free-slip-v]
type = INSFVNaturalFreeSlipBC
boundary = 'right'
variable = v
[]
[axis-u]
type = PINSFVSymmetryVelocityBC
boundary = 'left'
variable = u
u = u
v = v
mu = ${mu}
momentum_component = x
porosity = porosity
[]
[axis-v]
type = PINSFVSymmetryVelocityBC
boundary = 'left'
variable = v
u = u
v = v
mu = ${mu}
momentum_component = y
porosity = porosity
[]
[axis-p]
type = INSFVSymmetryPressureBC
boundary = 'left'
variable = pressure
[]
[outlet_p]
type = INSFVOutletPressureBC
boundary = 'top'
variable = pressure
function = 0
[]
[inlet_temp]
type = FVNeumannBC
boundary = 'bottom'
variable = temperature
value = 300
[]
[]
[Materials]
[ins_fv]
type = INSFVMaterial
u = 'u'
v = 'v'
pressure = 'pressure'
temperature = 'temperature'
rho = ${rho}
[]
[advected_material_property]
type = ADGenericConstantMaterial
prop_names = 'advected_rho cp'
prop_values ='${rho} 1'
[]
[]
[Executioner]
type = Steady
solve_type = 'NEWTON'
petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_pc_type -sub_pc_factor_shift_type'
petsc_options_value = 'asm 200 lu NONZERO'
line_search = 'none'
nl_rel_tol = 1e-12
[]
[Postprocessors]
[inlet_mass_variable]
type = VolumetricFlowRate
boundary = bottom
vel_x = u
vel_y = v
advected_variable = advected_density
fv = true
advected_interp_method = ${advected_interp_method}
[]
[inlet_mass_constant]
type = VolumetricFlowRate
boundary = bottom
vel_x = u
vel_y = v
advected_variable = ${rho}
fv = true
advected_interp_method = ${advected_interp_method}
[]
[inlet_mass_matprop]
type = VolumetricFlowRate
boundary = bottom
vel_x = u
vel_y = v
advected_mat_prop = 'advected_rho'
fv = true
[]
[mid1_mass]
type = InternalVolumetricFlowRate
boundary = internal_bot
vel_x = u
vel_y = v
fv = true
advected_interp_method = ${advected_interp_method}
[]
[mid2_mass]
type = InternalVolumetricFlowRate
boundary = internal_top
vel_x = u
vel_y = v
fv = true
advected_interp_method = ${advected_interp_method}
[]
[outlet_mass]
type = VolumetricFlowRate
boundary = top
vel_x = u
vel_y = v
fv = true
advected_interp_method = ${advected_interp_method}
[]
[inlet_momentum_x]
type = VolumetricFlowRate
boundary = bottom
vel_x = u
vel_y = v
advected_variable = u
fv = true
advected_interp_method = ${advected_interp_method}
[]
[mid1_momentum_x]
type = InternalVolumetricFlowRate
boundary = internal_bot
vel_x = u
vel_y = v
advected_variable = u
fv = true
advected_interp_method = ${advected_interp_method}
[]
[mid2_momentum_x]
type = InternalVolumetricFlowRate
boundary = internal_top
vel_x = u
vel_y = v
advected_variable = u
fv = true
advected_interp_method = ${advected_interp_method}
[]
[outlet_momentum_x]
type = VolumetricFlowRate
boundary = top
vel_x = u
vel_y = v
advected_variable = u
fv = true
advected_interp_method = ${advected_interp_method}
[]
[inlet_momentum_y]
type = VolumetricFlowRate
boundary = bottom
vel_x = u
vel_y = v
advected_variable = v
fv = true
advected_interp_method = ${advected_interp_method}
[]
[mid1_momentum_y]
type = InternalVolumetricFlowRate
boundary = internal_bot
vel_x = u
vel_y = v
advected_variable = v
fv = true
advected_interp_method = ${advected_interp_method}
[]
[mid2_momentum_y]
type = InternalVolumetricFlowRate
boundary = internal_top
vel_x = u
vel_y = v
advected_variable = v
fv = true
advected_interp_method = ${advected_interp_method}
[]
[outlet_momentum_y]
type = VolumetricFlowRate
boundary = top
vel_x = u
vel_y = v
advected_variable = v
fv = true
advected_interp_method = ${advected_interp_method}
[]
[inlet_advected_energy]
type = VolumetricFlowRate
boundary = bottom
vel_x = u
vel_y = v
advected_mat_prop = 'rho_cp_temp'
fv = true
[]
[mid1_advected_energy]
type = InternalVolumetricFlowRate
boundary = internal_bot
vel_x = u
vel_y = v
advected_mat_prop = 'rho_cp_temp'
fv = true
[]
[mid2_advected_energy]
type = InternalVolumetricFlowRate
boundary = internal_top
vel_x = u
vel_y = v
advected_mat_prop = 'rho_cp_temp'
fv = true
[]
[outlet_advected_energy]
type = VolumetricFlowRate
boundary = top
vel_x = u
vel_y = v
advected_mat_prop = 'rho_cp_temp'
fv = true
[]
[]
[Outputs]
exodus = false
csv = true
inactive = 'console_mass console_momentum_x console_momentum_y console_energy'
[console_mass]
type = Console
start_step = 1
show = 'inlet_mass_variable inlet_mass_constant inlet_mass_matprop mid1_mass mid2_mass outlet_mass'
[]
[console_momentum_x]
type = Console
start_step = 1
show = 'inlet_momentum_x mid1_momentum_x mid2_momentum_x outlet_momentum_x'
[]
[console_momentum_y]
type = Console
start_step = 1
show = 'inlet_momentum_y mid1_momentum_y mid2_momentum_y outlet_momentum_y'
[]
[console_energy]
type = Console
start_step = 1
show = 'inlet_advected_energy mid1_advected_energy mid2_advected_energy outlet_advected_energy'
[]
[]
(test/tests/mesh_modifiers/sidesets_between_subdomains/between.i)
[Mesh]
[file]
type = FileMeshGenerator
file = twoblocks.e
[]
[extrude]
type = SideSetsBetweenSubdomainsGenerator
input = file
primary_block = 'left'
paired_block = 'right'
new_boundary = 'in_between'
[]
[]
# This input file is intended to be run with the "--mesh-only" option so
# no other sections are required