MooseMeshElementConversionUtils Namespace Reference

Classes
struct	BCTupleKeyComp

Functions
void	hexElemSplitter (MeshBase &mesh, const std::vector< libMesh::BoundaryInfo::BCTuple > &bdry_side_list, const dof_id_type elem_id, std::vector< dof_id_type > &converted_elems_ids)
	Split a HEX8 element into six TET4 elements. More...
void	pyramidElemSplitter (MeshBase &mesh, const std::vector< libMesh::BoundaryInfo::BCTuple > &bdry_side_list, const dof_id_type elem_id, std::vector< dof_id_type > &converted_elems_ids)
	Split a PYRAMID5 element into two TET4 elements. More...
void	prismElemSplitter (MeshBase &mesh, const std::vector< libMesh::BoundaryInfo::BCTuple > &bdry_side_list, const dof_id_type elem_id, std::vector< dof_id_type > &converted_elems_ids)
	Split a PRISM6 element into three TET4 elements. More...
void	nodeRotationHEX8 (const unsigned int min_id_index, const unsigned int sec_min_pos, std::vector< unsigned int > &face_rotation, std::vector< unsigned int > &node_rotation)
	Rotate a HEX8 element's nodes to ensure that the node with the minimum id is the first node; and the node among its three neighboring nodes with the minimum id is the second node. More...
std::vector< unsigned int >	neighborNodeIndicesHEX8 (unsigned int min_id_index)
	Calculate the indices (within the element nodes) of the three neighboring nodes of a node in a HEX8 element. More...
void	hexNodesToTetNodesDeterminer (std::vector< const Node *> &hex_nodes, std::vector< std::vector< unsigned int >> &rotated_tet_face_indices, std::vector< std::vector< const Node *>> &tet_nodes_list)
	For a vector of rotated nodes that can form a HEX8 element, create a vector of four-node sets that can form TET4 elements to replace the original HEX8 element. More...
std::vector< bool >	quadFaceDiagonalDirectionsHex (const std::vector< const Node *> &hex_nodes)
	For a HEX8 element, determine the direction of the diagonal line of each face that involves the node with the minimum id of that face. More...
bool	quadFaceDiagonalDirection (const std::vector< const Node *> &quad_nodes)
	For a QUAD4 element, determine the direction of the diagonal line that involves the node with the minimum id of that element. More...
std::vector< std::vector< unsigned int > >	tetNodesForHex (const std::vector< bool > diagonal_directions, std::vector< std::vector< unsigned int >> &tet_face_indices)
	Creates sets of four nodes indices that can form TET4 elements to replace the original HEX8 element. More...
void	nodeRotationPRISM6 (unsigned int min_id_index, std::vector< unsigned int > &face_rotation, std::vector< unsigned int > &node_rotation)
	Rotate a PRISM6 element nodes to ensure that the node with the minimum id is the first node. More...
void	prismNodesToTetNodesDeterminer (std::vector< const Node *> &prism_nodes, std::vector< std::vector< unsigned int >> &rotated_tet_face_indices, std::vector< std::vector< const Node *>> &tet_nodes_list)
	For a rotated nodes that can form a PRISM6 element, create a series of four-node set that can form TET4 elements to replace the original PRISM6 element. More...
std::vector< std::vector< unsigned int > >	tetNodesForPrism (const bool diagonal_direction, std::vector< std::vector< unsigned int >> &tet_face_indices)
	Creates sets of four nodes indices that can form TET4 elements to replace the original PRISM6 element. More...
void	nodeRotationPYRAMID5 (unsigned int min_id_index, std::vector< unsigned int > &face_rotation, std::vector< unsigned int > &node_rotation)
	Rotate a PYRAMID5 element nodes to ensure that the node with the minimum id is the first node for the bottom face. More...
void	pyramidNodesToTetNodesDeterminer (std::vector< const Node *> &pyramid_nodes, std::vector< std::vector< unsigned int >> &rotated_tet_face_indices, std::vector< std::vector< const Node *>> &tet_nodes_list)
	For a rotated nodes that can form a PYRAMID5 element, create a series of four-node set that can form TET4 elements to replace the original PYRAMID5 element. More...
void	convert3DMeshToAllTet4 (MeshBase &mesh, const std::vector< std::pair< dof_id_type, bool >> &elems_to_process, std::vector< dof_id_type > &converted_elems_ids_to_track, const subdomain_id_type block_id_to_remove, const bool delete_block_to_remove)
	Convert all the elements in a 3D mesh, consisting of only linear elements, into TET4 elements. More...
void	convert3DMeshToAllTet4 (MeshBase &mesh)
	Convert all the elements in a 3D mesh consisting of only linear elements into TET4 elements. More...
void	elementBoundaryInfoCollector (const std::vector< libMesh::BoundaryInfo::BCTuple > &bdry_side_list, const dof_id_type elem_id, const unsigned short n_elem_sides, std::vector< std::vector< boundary_id_type >> &elem_side_list)
	Collect the boundary information of the given element in a mesh. More...
void	convertElem (MeshBase &mesh, const dof_id_type &elem_id, const std::vector< unsigned int > &side_indices, const std::vector< std::vector< boundary_id_type >> &elem_side_info, const SubdomainID &subdomain_id_shift_base)
	Convert the element to an element with TRI3 side-elements on the user-specified sides by modifying the mesh. More...
void	convertHex8Elem (MeshBase &mesh, const dof_id_type &elem_id, const std::vector< unsigned int > &side_indices, const std::vector< std::vector< boundary_id_type >> &elem_side_info, const SubdomainID &subdomain_id_shift_base)
	Convert a HEX8 element to elements with TRI3 surfaces on the given original QUAD4 side(s). More...
void	createUnitPyramid5FromHex8 (MeshBase &mesh, const dof_id_type &elem_id, const unsigned int &side_index, const Node *new_node, const std::vector< boundary_id_type > &side_info, const SubdomainID &subdomain_id_shift_base)
	Create one PYRAMID5 element based on a side and the centroid of the HEX8 element. More...
void	createUnitTet4FromHex8 (MeshBase &mesh, const dof_id_type &elem_id, const unsigned int &side_index, const Node *new_node, const std::vector< boundary_id_type > &side_info, const SubdomainID &subdomain_id_shift_base)
	Create two TET4 elements based on a side and the centroid of the HEX8 element. More...
void	convertPrism6Elem (MeshBase &mesh, const dof_id_type &elem_id, const std::vector< unsigned int > &side_indices, const std::vector< std::vector< boundary_id_type >> &elem_side_info, const SubdomainID &subdomain_id_shift_base)
	Convert a PRISM6 element to elements with TRI3 surfaces on the given original QUAD4 side(s). More...
void	createUnitTet4FromPrism6 (MeshBase &mesh, const dof_id_type &elem_id, const unsigned int &side_index, const Node *new_node, const std::vector< boundary_id_type > &side_info, const SubdomainID &subdomain_id_shift_base)
	Create one or two TET4 elements based on a side and the centroid of the PRISM6 element. More...
void	createUnitPyramid5FromPrism6 (MeshBase &mesh, const dof_id_type &elem_id, const unsigned int &side_index, const Node *new_node, const std::vector< boundary_id_type > &side_info, const SubdomainID &subdomain_id_shift_base)
	Create a PYRAMID5 element opposite the sides converted to tets and the centroid of the PRISM6 element. More...
void	convertPyramid5Elem (MeshBase &mesh, const dof_id_type &elem_id, const std::vector< std::vector< boundary_id_type >> &elem_side_info, const SubdomainID &subdomain_id_shift_base)
	Convert a PYRAMID5 element to elements with TRI3 surfaces on the original QUAD4 side. More...
void	retainEEID (MeshBase &mesh, const dof_id_type &elem_id, Elem *new_elem_ptr)
	Retain the extra integer of the original element in a new element. More...
void	transitionLayerGenerator (MeshBase &mesh, const std::vector< BoundaryName > &boundary_names, const unsigned int conversion_element_layer_number, const bool external_boundaries_checking)
	Generate a transition layer of elements with TRI3 surfaces on the given boundaries. More...
void	assignConvertedElementsSubdomainNameSuffix (MeshBase &mesh, const std::set< subdomain_id_type > &original_subdomain_ids, const subdomain_id_type sid_shift_base, const SubdomainName &tet_suffix, const SubdomainName &pyramid_suffix)
	Assign a subdomain name suffix to the converted elements created during transition layer generation. More...
void	hexElemSplitter (MeshBase &mesh, const std::vector< libMesh::BoundaryInfo::BCTuple > &bdry_side_list, const dof_id_type elem_id, std::vector< dof_id_type > &converted_elems_ids)
void	prismElemSplitter (MeshBase &mesh, const std::vector< libMesh::BoundaryInfo::BCTuple > &bdry_side_list, const dof_id_type elem_id, std::vector< dof_id_type > &converted_elems_ids)
void	pyramidElemSplitter (MeshBase &mesh, const std::vector< libMesh::BoundaryInfo::BCTuple > &bdry_side_list, const dof_id_type elem_id, std::vector< dof_id_type > &converted_elems_ids)
void	hexNodesToTetNodesDeterminer (std::vector< const Node *> &hex_nodes, std::vector< std::vector< unsigned int >> &rotated_tet_face_indices, std::vector< std::vector< const Node *>> &tet_nodes_list)
std::vector< bool >	quadFaceDiagonalDirectionsHex (const std::vector< const Node *> &hex_nodes)
bool	quadFaceDiagonalDirection (const std::vector< const Node *> &quad_nodes)
void	prismNodesToTetNodesDeterminer (std::vector< const Node *> &prism_nodes, std::vector< std::vector< unsigned int >> &rotated_tet_face_indices, std::vector< std::vector< const Node *>> &tet_nodes_list)
void	pyramidNodesToTetNodesDeterminer (std::vector< const Node *> &pyramid_nodes, std::vector< std::vector< unsigned int >> &rotated_tet_face_indices, std::vector< std::vector< const Node *>> &tet_nodes_list)
void	convert3DMeshToAllTet4 (MeshBase &mesh, const std::vector< std::pair< dof_id_type, bool >> &elems_to_process, std::vector< dof_id_type > &converted_elems_ids_to_track, const subdomain_id_type block_id_to_remove, const bool delete_block_to_remove)
void	convert3DMeshToAllTet4 (MeshBase &mesh)
void	elementBoundaryInfoCollector (const std::vector< libMesh::BoundaryInfo::BCTuple > &bdry_side_list, const dof_id_type elem_id, const unsigned short n_elem_sides, std::vector< std::vector< boundary_id_type >> &elem_side_list)
	Collect the boundary information of the given element in a mesh. More...
void	convertElem (MeshBase &mesh, const dof_id_type &elem_id, const std::vector< unsigned int > &side_indices, const std::vector< std::vector< boundary_id_type >> &elem_side_info, const SubdomainID &subdomain_id_shift_base)
void	convertHex8Elem (MeshBase &mesh, const dof_id_type &elem_id, const std::vector< unsigned int > &side_indices, const std::vector< std::vector< boundary_id_type >> &elem_side_info, const SubdomainID &subdomain_id_shift_base)
void	createUnitPyramid5FromHex8 (MeshBase &mesh, const dof_id_type &elem_id, const unsigned int &side_index, const Node *new_node, const std::vector< boundary_id_type > &side_info, const SubdomainID &subdomain_id_shift_base)
void	createUnitTet4FromHex8 (MeshBase &mesh, const dof_id_type &elem_id, const unsigned int &side_index, const Node *new_node, const std::vector< boundary_id_type > &side_info, const SubdomainID &subdomain_id_shift_base)
void	convertPrism6Elem (MeshBase &mesh, const dof_id_type &elem_id, const std::vector< unsigned int > &side_indices, const std::vector< std::vector< boundary_id_type >> &elem_side_info, const SubdomainID &subdomain_id_shift_base)
void	createUnitTet4FromPrism6 (MeshBase &mesh, const dof_id_type &elem_id, const unsigned int &side_index, const Node *new_node, const std::vector< boundary_id_type > &side_info, const SubdomainID &subdomain_id_shift_base)
void	createUnitPyramid5FromPrism6 (MeshBase &mesh, const dof_id_type &elem_id, const unsigned int &side_index, const Node *new_node, const std::vector< boundary_id_type > &side_info, const SubdomainID &subdomain_id_shift_base)
void	convertPyramid5Elem (MeshBase &mesh, const dof_id_type &elem_id, const std::vector< std::vector< boundary_id_type >> &elem_side_info, const SubdomainID &subdomain_id_shift_base)
void	retainEEID (MeshBase &mesh, const dof_id_type &elem_id, Elem *new_elem_ptr)
void	transitionLayerGenerator (MeshBase &mesh, const std::vector< BoundaryName > &boundary_names, const unsigned int conversion_element_layer_number, const bool external_boundaries_checking)
void	assignConvertedElementsSubdomainNameSuffix (MeshBase &mesh, const std::set< subdomain_id_type > &original_subdomain_ids, const subdomain_id_type sid_shift_base, const SubdomainName &tet_suffix, const SubdomainName &pyramid_suffix)

Function Documentation

assignConvertedElementsSubdomainNameSuffix() [1/2]

void MooseMeshElementConversionUtils::assignConvertedElementsSubdomainNameSuffix	(	MeshBase &	mesh,
		const std::set< subdomain_id_type > &	original_subdomain_ids,
		const subdomain_id_type	sid_shift_base,
		const SubdomainName &	tet_suffix,
		const SubdomainName &	pyramid_suffix
	)

Assign a subdomain name suffix to the converted elements created during transition layer generation.

Parameters

mesh	The mesh to be modified
original_subdomain_ids	A set of original subdomain IDs of the mesh before conversion
sid_shift_base	The base subdomain ID to shift the original elements because of the element type change
tet_suffix	The suffix to be added to the subdomain names of the converted TET4 elements
pyramid_suffix	The suffix to be added to the subdomain names of the converted PYRAMID5 elements

Referenced by BoundaryElementConversionGenerator::generate(), and CutMeshByLevelSetGeneratorBase::generate().

assignConvertedElementsSubdomainNameSuffix() [2/2]

void MooseMeshElementConversionUtils::assignConvertedElementsSubdomainNameSuffix	(	MeshBase &	mesh,
		const std::set< subdomain_id_type > &	original_subdomain_ids,
		const subdomain_id_type	sid_shift_base,
		const SubdomainName &	tet_suffix,
		const SubdomainName &	pyramid_suffix
	)

Definition at line 1235 of file MooseMeshElementConversionUtils.C.

{
  for (const auto & subdomain_id : original_subdomain_ids)
  {
    if (MooseMeshUtils::hasSubdomainID(mesh, subdomain_id + sid_shift_base))
    {
      const SubdomainName new_name =
          (mesh.subdomain_name(subdomain_id).empty() ? std::to_string(subdomain_id)
                                                     : mesh.subdomain_name(subdomain_id)) +
          '_' + tet_suffix;
      if (MooseMeshUtils::hasSubdomainName(mesh, new_name))
        throw MooseException(
            "This suffix for converted TET4 elements results in a subdomain name, " + new_name +
            ", that already exists in the mesh. Please choose a different suffix.");
      mesh.subdomain_name(subdomain_id + sid_shift_base) = new_name;
    }
    if (MooseMeshUtils::hasSubdomainID(mesh, subdomain_id + 2 * sid_shift_base))
    {
      const SubdomainName new_name =
          (mesh.subdomain_name(subdomain_id).empty() ? std::to_string(subdomain_id)
                                                     : mesh.subdomain_name(subdomain_id)) +
          '_' + pyramid_suffix;
      if (MooseMeshUtils::hasSubdomainName(mesh, new_name))
        throw MooseException(
            "This suffix for converted PYRAMID5 elements results in a subdomain name, " + new_name +
            ", that already exists in the mesh. Please choose a different suffix.");
      mesh.subdomain_name(subdomain_id + 2 * sid_shift_base) = new_name;
    }
  }
}

convert3DMeshToAllTet4() [1/4]

void MooseMeshElementConversionUtils::convert3DMeshToAllTet4	(	MeshBase &	mesh,
		const std::vector< std::pair< dof_id_type, bool >> &	elems_to_process,
		std::vector< dof_id_type > &	converted_elems_ids_to_track,
		const subdomain_id_type	block_id_to_remove,
		const bool	delete_block_to_remove
	)

Convert all the elements in a 3D mesh, consisting of only linear elements, into TET4 elements.

Parameters

mesh	The mesh to be converted
elems_to_process	A vector of pairs of element ids and a bool indicating whether the element needs to be fully retained or will be further processed in the following procedures
converted_elems_ids_to_track	A vector of element ids that need to be tracked for being further processed in the following procedures
block_id_to_remove	The id of a new subdomain in the mesh containing all the elements to be removed
delete_block_to_remove	A bool indicating whether the block to be removed will be deleted in this method

Referenced by ElementsToTetrahedronsConverter::generate(), CutMeshByLevelSetGeneratorBase::generate(), and transitionLayerGenerator().

convert3DMeshToAllTet4() [2/4]

void MooseMeshElementConversionUtils::convert3DMeshToAllTet4

(

MeshBase &

mesh

)

Convert all the elements in a 3D mesh consisting of only linear elements into TET4 elements.

Parameters

mesh	The mesh to be converted

convert3DMeshToAllTet4() [3/4]

void MooseMeshElementConversionUtils::convert3DMeshToAllTet4	(	MeshBase &	mesh,
		const std::vector< std::pair< dof_id_type, bool >> &	elems_to_process,
		std::vector< dof_id_type > &	converted_elems_ids_to_track,
		const subdomain_id_type	block_id_to_remove,
		const bool	delete_block_to_remove
	)

Definition at line 585 of file MooseMeshElementConversionUtils.C.

{
  mooseAssert(mesh.is_serial(),
              "This method only supports serial meshes. If you are calling this method with a "
              "distributed mesh, please serialize it first.");
  std::vector<dof_id_type> converted_elems_ids_to_retain;
  // Build boundary information of the mesh
  BoundaryInfo & boundary_info = mesh.get_boundary_info();
  const auto bdry_side_list = boundary_info.build_side_list();
  for (const auto & elem_to_process : elems_to_process)
  {
    switch (mesh.elem_ptr(elem_to_process.first)->type())
    {
      case ElemType::HEX8:
        hexElemSplitter(mesh,
                        bdry_side_list,
                        elem_to_process.first,
                        elem_to_process.second ? converted_elems_ids_to_track
                                               : converted_elems_ids_to_retain);
        mesh.elem_ptr(elem_to_process.first)->subdomain_id() = block_id_to_remove;
        break;
      case ElemType::PYRAMID5:
        pyramidElemSplitter(mesh,
                            bdry_side_list,
                            elem_to_process.first,
                            elem_to_process.second ? converted_elems_ids_to_track
                                                   : converted_elems_ids_to_retain);
        mesh.elem_ptr(elem_to_process.first)->subdomain_id() = block_id_to_remove;
        break;
      case ElemType::PRISM6:
        prismElemSplitter(mesh,
                          bdry_side_list,
                          elem_to_process.first,
                          elem_to_process.second ? converted_elems_ids_to_track
                                                 : converted_elems_ids_to_retain);
        mesh.elem_ptr(elem_to_process.first)->subdomain_id() = block_id_to_remove;
        break;
      case ElemType::TET4:
        if (elem_to_process.second)
          converted_elems_ids_to_track.push_back(elem_to_process.first);
        else
          converted_elems_ids_to_retain.push_back(elem_to_process.first);
        break;
      default:
        mooseError("Unexpected element type.");
    }
  }

  if (delete_block_to_remove)
  {
    for (auto elem_it = mesh.active_subdomain_elements_begin(block_id_to_remove);
         elem_it != mesh.active_subdomain_elements_end(block_id_to_remove);
         elem_it++)
      mesh.delete_elem(*elem_it);

    mesh.contract();
    mesh.prepare_for_use();
  }
}

convert3DMeshToAllTet4() [4/4]

void MooseMeshElementConversionUtils::convert3DMeshToAllTet4

(

MeshBase &

mesh

)

Definition at line 650 of file MooseMeshElementConversionUtils.C.

{
  mooseAssert(mesh.is_serial(),
              "This method only supports serial meshes. If you are calling this method with a "
              "distributed mesh, please serialize it first.");
  // Subdomain ID for new utility blocks must be new
  std::set<subdomain_id_type> subdomain_ids_set;
  mesh.subdomain_ids(subdomain_ids_set);
  const subdomain_id_type max_subdomain_id = *subdomain_ids_set.rbegin();
  const subdomain_id_type block_id_to_remove = max_subdomain_id + 1;
  std::vector<std::pair<dof_id_type, bool>> original_elems;

  for (auto elem_it = mesh.active_elements_begin(); elem_it != mesh.active_elements_end();
       elem_it++)
  {
    if ((*elem_it)->default_order() != Order::FIRST)
      mooseError("Only first order elements are supported for cutting.");
    original_elems.push_back(std::make_pair((*elem_it)->id(), false));
  }

  std::vector<dof_id_type> converted_elems_ids_to_track;

  convert3DMeshToAllTet4(
      mesh, original_elems, converted_elems_ids_to_track, block_id_to_remove, true);
}

convertElem() [1/2]

void MooseMeshElementConversionUtils::convertElem	(	MeshBase &	mesh,
		const dof_id_type &	elem_id,
		const std::vector< unsigned int > &	side_indices,
		const std::vector< std::vector< boundary_id_type >> &	elem_side_info,
		const SubdomainID &	subdomain_id_shift_base
	)

Convert the element to an element with TRI3 side-elements on the user-specified sides by modifying the mesh.

Parameters

mesh	The mesh containing the element
elem_id	The ID of the element to be converted
side_indices	The indices of the sides to be converted
elem_side_info	The boundary IDs associated with the sides of the element
subdomain_id_shift_base	the reference id used to shift the subdomain ID for new elements

Referenced by CutMeshByLevelSetGeneratorBase::generate(), and transitionLayerGenerator().

convertElem() [2/2]

void MooseMeshElementConversionUtils::convertElem	(	MeshBase &	mesh,
		const dof_id_type &	elem_id,
		const std::vector< unsigned int > &	side_indices,
		const std::vector< std::vector< boundary_id_type >> &	elem_side_info,
		const SubdomainID &	subdomain_id_shift_base
	)

Definition at line 694 of file MooseMeshElementConversionUtils.C.

{
  const auto & elem_type = mesh.elem_ptr(elem_id)->type();
  switch (elem_type)
  {
    case HEX8:
      // HEX8 to PYRAMID5 (+2*subdomain_id_shift_base)
      // HEX8 to TET4 (+subdomain_id_shift_base)
      convertHex8Elem(mesh, elem_id, side_indices, elem_side_info, subdomain_id_shift_base);
      break;
    case PRISM6:
      // PRISM6 to TET4 (+subdomain_id_shift_base)
      // PRISM6 to PYRAMID5 (+2*subdomain_id_shift_base)
      convertPrism6Elem(mesh, elem_id, side_indices, elem_side_info, subdomain_id_shift_base);
      break;
    case PYRAMID5:
      // PYRAMID5 to TET4 (+subdomain_id_shift_base)
      convertPyramid5Elem(mesh, elem_id, elem_side_info, subdomain_id_shift_base);
      break;
    default:
      mooseAssert(false,
                  "The provided element type '" + std::to_string(elem_type) +
                      "' is not supported and is not supposed to be passed to this function. "
                      "Only HEX8, PRISM6 and PYRAMID5 are supported.");
  }
}

convertHex8Elem() [1/2]

void MooseMeshElementConversionUtils::convertHex8Elem	(	MeshBase &	mesh,
		const dof_id_type &	elem_id,
		const std::vector< unsigned int > &	side_indices,
		const std::vector< std::vector< boundary_id_type >> &	elem_side_info,
		const SubdomainID &	subdomain_id_shift_base
	)

Convert a HEX8 element to elements with TRI3 surfaces on the given original QUAD4 side(s).

Parameters

mesh	The mesh containing the element
elem_id	The ID of the HEX8 element to be converted
side_indices	The indices of the QUAD4 sides to be converted to TRI3 sides
elem_side_info	The boundary IDs associated with the sides of the HEX8 element
subdomain_id_shift_base	the reference id used to shift the subdomain ID for new elements

convertHex8Elem() [2/2]

void MooseMeshElementConversionUtils::convertHex8Elem	(	MeshBase &	mesh,
		const dof_id_type &	elem_id,
		const std::vector< unsigned int > &	side_indices,
		const std::vector< std::vector< boundary_id_type >> &	elem_side_info,
		const SubdomainID &	subdomain_id_shift_base
	)

Definition at line 726 of file MooseMeshElementConversionUtils.C.

Referenced by convertElem().

{
  // We add a node at the centroid of the HEX8 element
  // With this node, the HEX8 can be converted into 6 PYRAMID5 elements
  // For the PYRAMID5 element at the 'side_indices', they can further be converted into 2 TET4
  // elements
  const Point elem_cent = mesh.elem_ptr(elem_id)->true_centroid();
  auto new_node = mesh.add_point(elem_cent);
  for (const auto & i_side : make_range(mesh.elem_ptr(elem_id)->n_sides()))
  {
    if (std::find(side_indices.begin(), side_indices.end(), i_side) != side_indices.end())
      createUnitTet4FromHex8(
          mesh, elem_id, i_side, new_node, elem_side_info[i_side], subdomain_id_shift_base);
    else
      createUnitPyramid5FromHex8(
          mesh, elem_id, i_side, new_node, elem_side_info[i_side], subdomain_id_shift_base);
  }
}

convertPrism6Elem() [1/2]

void MooseMeshElementConversionUtils::convertPrism6Elem	(	MeshBase &	mesh,
		const dof_id_type &	elem_id,
		const std::vector< unsigned int > &	side_indices,
		const std::vector< std::vector< boundary_id_type >> &	elem_side_info,
		const SubdomainID &	subdomain_id_shift_base
	)

Convert a PRISM6 element to elements with TRI3 surfaces on the given original QUAD4 side(s).

Parameters

mesh	The mesh containing the element
elem_id	The ID of the PRISM6 element to be converted
side_indices	The indices of the QUAD sides to be converted to TRI3 sides
elem_side_info	The boundary IDs associated with the sides of the PRISM6 element
subdomain_id_shift_base	the reference id used to shift the subdomain ID for new elements

convertPrism6Elem() [2/2]

void MooseMeshElementConversionUtils::convertPrism6Elem	(	MeshBase &	mesh,
		const dof_id_type &	elem_id,
		const std::vector< unsigned int > &	side_indices,
		const std::vector< std::vector< boundary_id_type >> &	elem_side_info,
		const SubdomainID &	subdomain_id_shift_base
	)

Definition at line 832 of file MooseMeshElementConversionUtils.C.

Referenced by convertElem().

{
  // We add a node at the centroid of the PRISM6 element
  // With this node, the PRISM6 can be converted into 3 PYRAMID5 elements and 2 TET4 elements
  // For the PYRAMID5 element, it can further be converted into 2 TET3 elements
  const Point elem_cent = mesh.elem_ptr(elem_id)->true_centroid();
  auto new_node = mesh.add_point(elem_cent);
  for (const auto & i_side : make_range(mesh.elem_ptr(elem_id)->n_sides()))
  {
    if (i_side % 4 == 0 ||
        std::find(side_indices.begin(), side_indices.end(), i_side) != side_indices.end())
      createUnitTet4FromPrism6(
          mesh, elem_id, i_side, new_node, elem_side_info[i_side], subdomain_id_shift_base);
    else
      createUnitPyramid5FromPrism6(
          mesh, elem_id, i_side, new_node, elem_side_info[i_side], subdomain_id_shift_base);
  }
}

convertPyramid5Elem() [1/2]

void MooseMeshElementConversionUtils::convertPyramid5Elem	(	MeshBase &	mesh,
		const dof_id_type &	elem_id,
		const std::vector< std::vector< boundary_id_type >> &	elem_side_info,
		const SubdomainID &	subdomain_id_shift_base
	)

Convert a PYRAMID5 element to elements with TRI3 surfaces on the original QUAD4 side.

Parameters

mesh	The mesh containing the element
elem_id	The ID of the PYRAMID5 element to be converted
elem_side_info	The boundary IDs associated with the sides of the PYRAMID
subdomain_id_shift_base	the reference id used to shift the subdomain ID for new elements

convertPyramid5Elem() [2/2]

void MooseMeshElementConversionUtils::convertPyramid5Elem	(	MeshBase &	mesh,
		const dof_id_type &	elem_id,
		const std::vector< std::vector< boundary_id_type >> &	elem_side_info,
		const SubdomainID &	subdomain_id_shift_base
	)

Definition at line 939 of file MooseMeshElementConversionUtils.C.

Referenced by convertElem().

{
  // A Pyramid5 element has only one QUAD4 face, so we can convert it to 2 TET4 elements
  unsigned int lid_index = 0;
  for (const auto & i : make_range(1, 4))
  {
    if (mesh.elem_ptr(elem_id)->side_ptr(4)->node_ptr(i)->id() <
        mesh.elem_ptr(elem_id)->side_ptr(4)->node_ptr(lid_index)->id())
      lid_index = i;
  }
  auto new_elem_0 = std::make_unique<Tet4>();
  new_elem_0->set_node(
      0,
      mesh.elem_ptr(elem_id)->side_ptr(4)->node_ptr(MathUtils::euclideanMod(2 - lid_index % 2, 4)));
  new_elem_0->set_node(
      1,
      mesh.elem_ptr(elem_id)->side_ptr(4)->node_ptr(MathUtils::euclideanMod(1 - lid_index % 2, 4)));
  new_elem_0->set_node(
      2,
      mesh.elem_ptr(elem_id)->side_ptr(4)->node_ptr(MathUtils::euclideanMod(0 - lid_index % 2, 4)));
  new_elem_0->set_node(3, mesh.elem_ptr(elem_id)->node_ptr(4));
  new_elem_0->subdomain_id() = mesh.elem_ptr(elem_id)->subdomain_id() + subdomain_id_shift_base;
  auto new_elem_ptr_0 = mesh.add_elem(std::move(new_elem_0));
  retainEEID(mesh, elem_id, new_elem_ptr_0);

  auto new_elem_1 = std::make_unique<Tet4>();
  new_elem_1->set_node(
      0,
      mesh.elem_ptr(elem_id)->side_ptr(4)->node_ptr(MathUtils::euclideanMod(3 - lid_index % 2, 4)));
  new_elem_1->set_node(
      1,
      mesh.elem_ptr(elem_id)->side_ptr(4)->node_ptr(MathUtils::euclideanMod(2 - lid_index % 2, 4)));
  new_elem_1->set_node(
      2,
      mesh.elem_ptr(elem_id)->side_ptr(4)->node_ptr(MathUtils::euclideanMod(0 - lid_index % 2, 4)));
  new_elem_1->set_node(3, mesh.elem_ptr(elem_id)->node_ptr(4));
  new_elem_1->subdomain_id() = mesh.elem_ptr(elem_id)->subdomain_id() + subdomain_id_shift_base;
  auto new_elem_ptr_1 = mesh.add_elem(std::move(new_elem_1));
  retainEEID(mesh, elem_id, new_elem_ptr_1);

  for (const auto & bid : elem_side_info[0])
    mesh.get_boundary_info().add_side(new_elem_ptr_0, 2 - lid_index % 2, bid);
  for (const auto & bid : elem_side_info[1])
    if (lid_index % 2)
      mesh.get_boundary_info().add_side(new_elem_ptr_1, 2, bid);
    else
      mesh.get_boundary_info().add_side(new_elem_ptr_0, 1, bid);
  for (const auto & bid : elem_side_info[2])
    mesh.get_boundary_info().add_side(new_elem_ptr_1, 2 + lid_index % 2, bid);
  for (const auto & bid : elem_side_info[3])
    if (lid_index % 2)
      mesh.get_boundary_info().add_side(new_elem_ptr_0, 1, bid);
    else
      mesh.get_boundary_info().add_side(new_elem_ptr_1, 3, bid);
  for (const auto & bid : elem_side_info[4])
  {
    mesh.get_boundary_info().add_side(new_elem_ptr_0, 0, bid);
    mesh.get_boundary_info().add_side(new_elem_ptr_1, 0, bid);
  }
}

createUnitPyramid5FromHex8() [1/2]

void MooseMeshElementConversionUtils::createUnitPyramid5FromHex8	(	MeshBase &	mesh,
		const dof_id_type &	elem_id,
		const unsigned int &	side_index,
		const Node *	new_node,
		const std::vector< boundary_id_type > &	side_info,
		const SubdomainID &	subdomain_id_shift_base
	)

Create one PYRAMID5 element based on a side and the centroid of the HEX8 element.

Parameters

mesh	The mesh containing the element
elem_id	The ID of the HEX8 element to be converted
side_index	The index of the side to be converted
new_node	The new node created at the centroid of the HEX8 element
side_info	The boundary IDs associated with the side of the HEX8 element
subdomain_id_shift_base	the reference id used to shift the subdomain ID for new elements

createUnitPyramid5FromHex8() [2/2]

void MooseMeshElementConversionUtils::createUnitPyramid5FromHex8	(	MeshBase &	mesh,
		const dof_id_type &	elem_id,
		const unsigned int &	side_index,
		const Node *	new_node,
		const std::vector< boundary_id_type > &	side_info,
		const SubdomainID &	subdomain_id_shift_base
	)

Definition at line 750 of file MooseMeshElementConversionUtils.C.

Referenced by convertHex8Elem(), and createUnitPyramid5FromPrism6().

{
  auto new_elem = std::make_unique<Pyramid5>();
  new_elem->set_node(0, mesh.elem_ptr(elem_id)->side_ptr(side_index)->node_ptr(3));
  new_elem->set_node(1, mesh.elem_ptr(elem_id)->side_ptr(side_index)->node_ptr(2));
  new_elem->set_node(2, mesh.elem_ptr(elem_id)->side_ptr(side_index)->node_ptr(1));
  new_elem->set_node(3, mesh.elem_ptr(elem_id)->side_ptr(side_index)->node_ptr(0));
  new_elem->set_node(4, const_cast<Node *>(new_node));
  new_elem->subdomain_id() = mesh.elem_ptr(elem_id)->subdomain_id() + subdomain_id_shift_base * 2;
  auto new_elem_ptr = mesh.add_elem(std::move(new_elem));
  retainEEID(mesh, elem_id, new_elem_ptr);
  for (const auto & bid : side_info)
    mesh.get_boundary_info().add_side(new_elem_ptr, 4, bid);
}

createUnitPyramid5FromPrism6() [1/2]

void MooseMeshElementConversionUtils::createUnitPyramid5FromPrism6	(	MeshBase &	mesh,
		const dof_id_type &	elem_id,
		const unsigned int &	side_index,
		const Node *	new_node,
		const std::vector< boundary_id_type > &	side_info,
		const SubdomainID &	subdomain_id_shift_base
	)

Create a PYRAMID5 element opposite the sides converted to tets and the centroid of the PRISM6 element.

Parameters

mesh	The mesh containing the element
elem_id	The ID of the PRISM6 element to be converted
side_index	The index of the side to be converted
new_node	The new node created at the centroid of the PRISM6 element
side_info	The boundary IDs associated with the side of the PRISM6 element
subdomain_id_shift_base	the reference id used to shift the subdomain ID for new elements

createUnitPyramid5FromPrism6() [2/2]

void MooseMeshElementConversionUtils::createUnitPyramid5FromPrism6	(	MeshBase &	mesh,
		const dof_id_type &	elem_id,
		const unsigned int &	side_index,
		const Node *	new_node,
		const std::vector< boundary_id_type > &	side_info,
		const SubdomainID &	subdomain_id_shift_base
	)

Definition at line 926 of file MooseMeshElementConversionUtils.C.

Referenced by convertPrism6Elem().

{
  // Same as Hex8
  createUnitPyramid5FromHex8(
      mesh, elem_id, side_index, new_node, side_info, subdomain_id_shift_base);
}

createUnitTet4FromHex8() [1/2]

void MooseMeshElementConversionUtils::createUnitTet4FromHex8	(	MeshBase &	mesh,
		const dof_id_type &	elem_id,
		const unsigned int &	side_index,
		const Node *	new_node,
		const std::vector< boundary_id_type > &	side_info,
		const SubdomainID &	subdomain_id_shift_base
	)

Create two TET4 elements based on a side and the centroid of the HEX8 element.

Parameters

mesh	The mesh containing the element
elem_id	The ID of the HEX8 element to be converted
side_index	The index of the side to be converted
new_node	The new node created at the centroid of the HEX8 element
side_info	The boundary IDs associated with the side of the HEX8 element
subdomain_id_shift_base	the reference id used to shift the subdomain ID for new elements

createUnitTet4FromHex8() [2/2]

void MooseMeshElementConversionUtils::createUnitTet4FromHex8	(	MeshBase &	mesh,
		const dof_id_type &	elem_id,
		const unsigned int &	side_index,
		const Node *	new_node,
		const std::vector< boundary_id_type > &	side_info,
		const SubdomainID &	subdomain_id_shift_base
	)

Definition at line 771 of file MooseMeshElementConversionUtils.C.

Referenced by convertHex8Elem().

{
  // We want to make sure that the QUAD4 is divided by the diagonal that involves the node with
  // the lowest node id This may help maintain consistency for future applications
  unsigned int lid_index = 0;
  for (const auto & i : make_range(1, 4))
  {
    if (mesh.elem_ptr(elem_id)->side_ptr(side_index)->node_ptr(i)->id() <
        mesh.elem_ptr(elem_id)->side_ptr(side_index)->node_ptr(lid_index)->id())
      lid_index = i;
  }

  auto new_elem_0 = std::make_unique<Tet4>();
  new_elem_0->set_node(0,
                       mesh.elem_ptr(elem_id)
                           ->side_ptr(side_index)
                           ->node_ptr(MathUtils::euclideanMod(2 - lid_index % 2, 4)));
  new_elem_0->set_node(1,
                       mesh.elem_ptr(elem_id)
                           ->side_ptr(side_index)
                           ->node_ptr(MathUtils::euclideanMod(1 - lid_index % 2, 4)));
  new_elem_0->set_node(2,
                       mesh.elem_ptr(elem_id)
                           ->side_ptr(side_index)
                           ->node_ptr(MathUtils::euclideanMod(0 - lid_index % 2, 4)));
  new_elem_0->set_node(3, const_cast<Node *>(new_node));
  new_elem_0->subdomain_id() = mesh.elem_ptr(elem_id)->subdomain_id() + subdomain_id_shift_base;
  auto new_elem_ptr_0 = mesh.add_elem(std::move(new_elem_0));
  retainEEID(mesh, elem_id, new_elem_ptr_0);

  auto new_elem_1 = std::make_unique<Tet4>();
  new_elem_1->set_node(0,
                       mesh.elem_ptr(elem_id)
                           ->side_ptr(side_index)
                           ->node_ptr(MathUtils::euclideanMod(3 - lid_index % 2, 4)));
  new_elem_1->set_node(1,
                       mesh.elem_ptr(elem_id)
                           ->side_ptr(side_index)
                           ->node_ptr(MathUtils::euclideanMod(2 - lid_index % 2, 4)));
  new_elem_1->set_node(2,
                       mesh.elem_ptr(elem_id)
                           ->side_ptr(side_index)
                           ->node_ptr(MathUtils::euclideanMod(0 - lid_index % 2, 4)));
  new_elem_1->set_node(3, const_cast<Node *>(new_node));
  new_elem_1->subdomain_id() = mesh.elem_ptr(elem_id)->subdomain_id() + subdomain_id_shift_base;
  auto new_elem_ptr_1 = mesh.add_elem(std::move(new_elem_1));
  retainEEID(mesh, elem_id, new_elem_ptr_1);

  for (const auto & bid : side_info)
  {
    mesh.get_boundary_info().add_side(new_elem_ptr_0, 0, bid);
    mesh.get_boundary_info().add_side(new_elem_ptr_1, 0, bid);
  }
}

createUnitTet4FromPrism6() [1/2]

void MooseMeshElementConversionUtils::createUnitTet4FromPrism6	(	MeshBase &	mesh,
		const dof_id_type &	elem_id,
		const unsigned int &	side_index,
		const Node *	new_node,
		const std::vector< boundary_id_type > &	side_info,
		const SubdomainID &	subdomain_id_shift_base
	)

Create one or two TET4 elements based on a side and the centroid of the PRISM6 element.

Parameters

mesh	The mesh containing the element
elem_id	The ID of the PRISM6 element to be converted
side_index	The index of the side to be converted
new_node	The new node created at the centroid of the PRISM6 element
side_info	The boundary IDs associated with the side of the PRISM6 element
subdomain_id_shift_base	the reference id used to shift the subdomain ID for new elements

createUnitTet4FromPrism6() [2/2]

void MooseMeshElementConversionUtils::createUnitTet4FromPrism6	(	MeshBase &	mesh,
		const dof_id_type &	elem_id,
		const unsigned int &	side_index,
		const Node *	new_node,
		const std::vector< boundary_id_type > &	side_info,
		const SubdomainID &	subdomain_id_shift_base
	)

Definition at line 856 of file MooseMeshElementConversionUtils.C.

Referenced by convertPrism6Elem().

{
  // For side 1 and side 4, they are already TRI3, so only one TET is created
  // For side 0, 2, and 3, they are QUAD4, so we create 2 TETs
  // We want to make sure that the QUAD4 is divided by the diagonal that involves
  // the node with the lowest node id This may help maintain consistency for future applications
  bool is_side_quad = (side_index % 4 != 0);
  unsigned int lid_index = 0;
  if (is_side_quad)
    for (const auto & i : make_range(1, 4))
    {
      if (mesh.elem_ptr(elem_id)->side_ptr(side_index)->node_ptr(i)->id() <
          mesh.elem_ptr(elem_id)->side_ptr(side_index)->node_ptr(lid_index)->id())
        lid_index = i;
    }
  // For a TRI3 side, lid_index is always 0, so the indices are always 2,1,0 here
  auto new_elem_0 = std::make_unique<Tet4>();
  new_elem_0->set_node(0,
                       mesh.elem_ptr(elem_id)
                           ->side_ptr(side_index)
                           ->node_ptr(MathUtils::euclideanMod(2 - lid_index % 2, 4)));
  new_elem_0->set_node(1,
                       mesh.elem_ptr(elem_id)
                           ->side_ptr(side_index)
                           ->node_ptr(MathUtils::euclideanMod(1 - lid_index % 2, 4)));
  new_elem_0->set_node(2,
                       mesh.elem_ptr(elem_id)
                           ->side_ptr(side_index)
                           ->node_ptr(MathUtils::euclideanMod(0 - lid_index % 2, 4)));
  new_elem_0->set_node(3, const_cast<Node *>(new_node));
  new_elem_0->subdomain_id() = mesh.elem_ptr(elem_id)->subdomain_id() + subdomain_id_shift_base;
  auto new_elem_ptr_0 = mesh.add_elem(std::move(new_elem_0));
  retainEEID(mesh, elem_id, new_elem_ptr_0);

  Elem * new_elem_ptr_1 = nullptr;
  if (is_side_quad)
  {
    auto new_elem_1 = std::make_unique<Tet4>();
    new_elem_1->set_node(0,
                         mesh.elem_ptr(elem_id)
                             ->side_ptr(side_index)
                             ->node_ptr(MathUtils::euclideanMod(3 - lid_index % 2, 4)));
    new_elem_1->set_node(1,
                         mesh.elem_ptr(elem_id)
                             ->side_ptr(side_index)
                             ->node_ptr(MathUtils::euclideanMod(2 - lid_index % 2, 4)));
    new_elem_1->set_node(2,
                         mesh.elem_ptr(elem_id)
                             ->side_ptr(side_index)
                             ->node_ptr(MathUtils::euclideanMod(0 - lid_index % 2, 4)));
    new_elem_1->set_node(3, const_cast<Node *>(new_node));
    new_elem_1->subdomain_id() = mesh.elem_ptr(elem_id)->subdomain_id() + subdomain_id_shift_base;
    new_elem_ptr_1 = mesh.add_elem(std::move(new_elem_1));
    retainEEID(mesh, elem_id, new_elem_ptr_1);
  }

  for (const auto & bid : side_info)
  {
    mesh.get_boundary_info().add_side(new_elem_ptr_0, 0, bid);
    if (new_elem_ptr_1)
      mesh.get_boundary_info().add_side(new_elem_ptr_1, 0, bid);
  }
}

elementBoundaryInfoCollector() [1/2]

void MooseMeshElementConversionUtils::elementBoundaryInfoCollector	(	const std::vector< libMesh::BoundaryInfo::BCTuple > &	bdry_side_list,
		const dof_id_type	elem_id,
		const unsigned short	n_elem_sides,
		std::vector< std::vector< boundary_id_type >> &	elem_side_list
	)

Collect the boundary information of the given element in a mesh.

Parameters

bdry_side_list	A list that contains the boundary information of the mesh
elem_id	The id of the element to be processed
n_elem_sides	The number of sides of the element
elem_side_list	a vector of vectors to record the boundary information of the element

Definition at line 677 of file MooseMeshElementConversionUtils.C.

Referenced by hexElemSplitter(), prismElemSplitter(), pyramidElemSplitter(), and CutMeshByLevelSetGeneratorBase::tet4ElemCutter().

{
  elem_side_list.resize(n_elem_sides);
  const auto selected_bdry_side_list =
      std::equal_range(bdry_side_list.begin(), bdry_side_list.end(), elem_id, BCTupleKeyComp{});
  for (auto selected_bdry_side = selected_bdry_side_list.first;
       selected_bdry_side != selected_bdry_side_list.second;
       ++selected_bdry_side)
  {
    elem_side_list[std::get<1>(*selected_bdry_side)].push_back(std::get<2>(*selected_bdry_side));
  }
}

elementBoundaryInfoCollector() [2/2]

void MooseMeshElementConversionUtils::elementBoundaryInfoCollector	(	const std::vector< libMesh::BoundaryInfo::BCTuple > &	bdry_side_list,
		const dof_id_type	elem_id,
		const unsigned short	n_elem_sides,
		std::vector< std::vector< boundary_id_type >> &	elem_side_list
	)

Collect the boundary information of the given element in a mesh.

Parameters

bdry_side_list	A list that contains the boundary information of the mesh
elem_id	The id of the element to be processed
n_elem_sides	The number of sides of the element
elem_side_list	a vector of vectors to record the boundary information of the element

Definition at line 677 of file MooseMeshElementConversionUtils.C.

Referenced by hexElemSplitter(), prismElemSplitter(), pyramidElemSplitter(), and CutMeshByLevelSetGeneratorBase::tet4ElemCutter().

{
  elem_side_list.resize(n_elem_sides);
  const auto selected_bdry_side_list =
      std::equal_range(bdry_side_list.begin(), bdry_side_list.end(), elem_id, BCTupleKeyComp{});
  for (auto selected_bdry_side = selected_bdry_side_list.first;
       selected_bdry_side != selected_bdry_side_list.second;
       ++selected_bdry_side)
  {
    elem_side_list[std::get<1>(*selected_bdry_side)].push_back(std::get<2>(*selected_bdry_side));
  }
}

hexElemSplitter() [1/2]

void MooseMeshElementConversionUtils::hexElemSplitter	(	MeshBase &	mesh,
		const std::vector< libMesh::BoundaryInfo::BCTuple > &	bdry_side_list,
		const dof_id_type	elem_id,
		std::vector< dof_id_type > &	converted_elems_ids
	)

Definition at line 32 of file MooseMeshElementConversionUtils.C.

Referenced by convert3DMeshToAllTet4().

{
  // Build boundary information of the mesh
  BoundaryInfo & boundary_info = mesh.get_boundary_info();
  // Create a list of sidesets involving the element to be split
  std::vector<std::vector<boundary_id_type>> elem_side_list;
  elem_side_list.resize(6);
  elementBoundaryInfoCollector(bdry_side_list, elem_id, 6, elem_side_list);

  const unsigned int n_elem_extra_ids = mesh.n_elem_integers();
  std::vector<dof_id_type> exist_extra_ids(n_elem_extra_ids);
  // Record all the element extra integers of the original quad element
  for (unsigned int j = 0; j < n_elem_extra_ids; j++)
    exist_extra_ids[j] = mesh.elem_ptr(elem_id)->get_extra_integer(j);

  std::vector<std::vector<unsigned int>> opt_option;
  std::vector<const Node *> elem_node_list = {mesh.elem_ptr(elem_id)->node_ptr(0),
                                              mesh.elem_ptr(elem_id)->node_ptr(1),
                                              mesh.elem_ptr(elem_id)->node_ptr(2),
                                              mesh.elem_ptr(elem_id)->node_ptr(3),
                                              mesh.elem_ptr(elem_id)->node_ptr(4),
                                              mesh.elem_ptr(elem_id)->node_ptr(5),
                                              mesh.elem_ptr(elem_id)->node_ptr(6),
                                              mesh.elem_ptr(elem_id)->node_ptr(7)};
  std::vector<std::vector<unsigned int>> rotated_tet_face_indices;

  std::vector<std::vector<const Node *>> optimized_node_list;
  hexNodesToTetNodesDeterminer(elem_node_list, rotated_tet_face_indices, optimized_node_list);

  std::vector<Elem *> elems_Tet4;
  for (const auto i : index_range(optimized_node_list))
  {
    auto new_elem = std::make_unique<Tet4>();
    new_elem->set_node(0, const_cast<Node *>(optimized_node_list[i][0]));
    new_elem->set_node(1, const_cast<Node *>(optimized_node_list[i][1]));
    new_elem->set_node(2, const_cast<Node *>(optimized_node_list[i][2]));
    new_elem->set_node(3, const_cast<Node *>(optimized_node_list[i][3]));
    new_elem->subdomain_id() = mesh.elem_ptr(elem_id)->subdomain_id();
    elems_Tet4.push_back(mesh.add_elem(std::move(new_elem)));
    converted_elems_ids.push_back(elems_Tet4.back()->id());

    for (unsigned int j = 0; j < 4; j++)
    {
      // A hex element has 6 faces indexed from 0 to 5
      // a <6 value indicates that the face of the tet element corresponds to the face of the
      // original hex; a =6 value means the face of the tet is an interior face of the hex
      if (rotated_tet_face_indices[i][j] < 6)
      {
        for (const auto & side_info : elem_side_list[rotated_tet_face_indices[i][j]])
          boundary_info.add_side(elems_Tet4.back(), j, side_info);
      }
    }
  }

  // Retain element extra integers
  for (unsigned int i = 0; i < 6; i++)
    for (unsigned int j = 0; j < n_elem_extra_ids; j++)
    {
      elems_Tet4[i]->set_extra_integer(j, exist_extra_ids[j]);
    }
}

hexElemSplitter() [2/2]

void MooseMeshElementConversionUtils::hexElemSplitter	(	MeshBase &	mesh,
		const std::vector< libMesh::BoundaryInfo::BCTuple > &	bdry_side_list,
		const dof_id_type	elem_id,
		std::vector< dof_id_type > &	converted_elems_ids
	)

Split a HEX8 element into six TET4 elements.

Parameters

mesh	The mesh to be modified
bdry_side_list	A list that contains the boundary information of the original mesh
elem_id	The id of the element to be split
converted_elems_ids	a vector to record the ids of the newly created TET4 elements

hexNodesToTetNodesDeterminer() [1/2]

void MooseMeshElementConversionUtils::hexNodesToTetNodesDeterminer	(	std::vector< const Node *> &	hex_nodes,
		std::vector< std::vector< unsigned int >> &	rotated_tet_face_indices,
		std::vector< std::vector< const Node *>> &	tet_nodes_list
	)

For a vector of rotated nodes that can form a HEX8 element, create a vector of four-node sets that can form TET4 elements to replace the original HEX8 element.

All the QUAD4 faces of the HEX8 element will be split by the diagonal line that involves the node with the minimum id of that face.

Parameters

hex_nodes	A vector of pointers to the nodes that can form a HEX8 element
rotated_tet_face_indices	A vector of vectors of the original face indices of the HEX8 element corresponding to the faces of the newly created TET4 elements
tet_nodes_list	a vector of vectors of pointers to the nodes that can form TET4 elements

hexNodesToTetNodesDeterminer() [2/2]

void MooseMeshElementConversionUtils::hexNodesToTetNodesDeterminer	(	std::vector< const Node *> &	hex_nodes,
		std::vector< std::vector< unsigned int >> &	rotated_tet_face_indices,
		std::vector< std::vector< const Node *>> &	tet_nodes_list
	)

Definition at line 231 of file MooseMeshElementConversionUtils.C.

Referenced by hexElemSplitter().

{
  // Find the node with the minimum id
  std::vector<dof_id_type> node_ids(8);
  for (unsigned int i = 0; i < 8; i++)
    node_ids[i] = hex_nodes[i]->id();

  const unsigned int min_node_id_index = std::distance(
      std::begin(node_ids), std::min_element(std::begin(node_ids), std::end(node_ids)));
  // Get the index of the three neighbor nodes of the minimum node
  // The order is consistent with the description in nodeRotationHEX8()
  // Then determine the index of the second minimum node
  const auto neighbor_node_indices = neighborNodeIndicesHEX8(min_node_id_index);

  const auto neighbor_node_ids = {node_ids[neighbor_node_indices[0]],
                                  node_ids[neighbor_node_indices[1]],
                                  node_ids[neighbor_node_indices[2]]};
  const unsigned int sec_min_pos =
      std::distance(std::begin(neighbor_node_ids),
                    std::min_element(std::begin(neighbor_node_ids), std::end(neighbor_node_ids)));

  // Rotate the node and face indices based on the identified minimum and second minimum nodes
  // After the rotation, we guarantee that the minimum node is the first node (Node 0)
  // And the second node (Node 1) has the minium global id among the three neighbor nodes of Node 0
  // This makes the splitting process simpler
  std::vector<unsigned int> face_rotation;
  std::vector<unsigned int> rotated_indices;
  nodeRotationHEX8(min_node_id_index, sec_min_pos, face_rotation, rotated_indices);
  std::vector<const Node *> rotated_hex_nodes;
  for (unsigned int i = 0; i < 8; i++)
    rotated_hex_nodes.push_back(hex_nodes[rotated_indices[i]]);

  // Find the selection of each face's cutting direction
  const auto diagonal_directions = quadFaceDiagonalDirectionsHex(rotated_hex_nodes);

  // Based on the determined splitting directions of all the faces, determine the nodes of each
  // resulting TET4 elements after the splitting.
  std::vector<std::vector<unsigned int>> tet_face_indices;
  const auto tet_nodes_set = tetNodesForHex(diagonal_directions, tet_face_indices);
  for (const auto & tet_face_index : tet_face_indices)
  {
    rotated_tet_face_indices.push_back(std::vector<unsigned int>());
    for (const auto & face_index : tet_face_index)
    {
      if (face_index < 6)
        rotated_tet_face_indices.back().push_back(face_rotation[face_index]);
      else
        rotated_tet_face_indices.back().push_back(6);
    }
  }

  for (const auto & tet_nodes : tet_nodes_set)
  {
    tet_nodes_list.push_back(std::vector<const Node *>());
    for (const auto & tet_node : tet_nodes)
      tet_nodes_list.back().push_back(rotated_hex_nodes[tet_node]);
  }
}

neighborNodeIndicesHEX8()

std::vector< unsigned int > MooseMeshElementConversionUtils::neighborNodeIndicesHEX8

(

unsigned int

min_id_index

)

Calculate the indices (within the element nodes) of the three neighboring nodes of a node in a HEX8 element.

Parameters

min_id_index

The index of the node with the minimum id

Returns

a vector of the three neighboring nodes

Definition at line 220 of file MooseMeshElementConversionUtils.C.

Referenced by hexNodesToTetNodesDeterminer().

{
  const std::vector<std::vector<unsigned int>> preset_indices = {
      {1, 3, 4}, {0, 2, 5}, {3, 1, 6}, {2, 0, 7}, {5, 7, 0}, {4, 6, 1}, {7, 5, 2}, {6, 4, 3}};
  if (min_id_index > 7)
    mooseError("The input node index is out of range.");
  else
    return preset_indices[min_id_index];
}

nodeRotationHEX8()

void MooseMeshElementConversionUtils::nodeRotationHEX8	(	const unsigned int	min_id_index,
		const unsigned int	sec_min_pos,
		std::vector< unsigned int > &	face_rotation,
		std::vector< unsigned int > &	node_rotation
	)

Rotate a HEX8 element's nodes to ensure that the node with the minimum id is the first node; and the node among its three neighboring nodes with the minimum id is the second node.

Parameters

min_id_index	The index of the node with the minimum id
sec_min_pos	The index of the node among its three neighboring nodes with the minimum id (see comments in the function for more details about how the index is defined)
face_rotation	A vector to record the rotation of the faces of the HEX8 element
node_rotation	a vector of node indices that can form a HEX8 element

Definition at line 374 of file MooseMeshElementConversionUtils.C.

Referenced by hexNodesToTetNodesDeterminer().

{
  // Assuming the original hex element is a cube, the vectors formed by nodes 0-1, 0-3, and 0-4 are
  // overlapped with the x, y, and z axes, respectively. sec_min_pos = 0 means the second minimum
  // node is in the x direction, sec_min_pos = 1 means the second minimum node is in the y
  // direction, and sec_min_pos = 2 means the second minimum node is in the z direction.
  const std::vector<std::vector<std::vector<unsigned int>>> preset_indices = {
      {{0, 1, 2, 3, 4, 5, 6, 7}, {0, 3, 7, 4, 1, 2, 6, 5}, {0, 4, 5, 1, 3, 7, 6, 2}},
      {{1, 0, 4, 5, 2, 3, 7, 6}, {1, 2, 3, 0, 5, 6, 7, 4}, {1, 5, 6, 2, 0, 4, 7, 3}},
      {{2, 3, 0, 1, 6, 7, 4, 5}, {2, 1, 5, 6, 3, 0, 4, 7}, {2, 6, 7, 3, 1, 5, 4, 0}},
      {{3, 2, 6, 7, 0, 1, 5, 4}, {3, 0, 1, 2, 7, 4, 5, 6}, {3, 7, 4, 0, 2, 6, 5, 1}},
      {{4, 5, 1, 0, 7, 6, 2, 3}, {4, 7, 6, 5, 0, 3, 2, 1}, {4, 0, 3, 7, 5, 1, 2, 6}},
      {{5, 4, 7, 6, 1, 0, 3, 2}, {5, 6, 2, 1, 4, 7, 3, 0}, {5, 1, 0, 4, 6, 2, 3, 7}},
      {{6, 7, 3, 2, 5, 4, 0, 1}, {6, 5, 4, 7, 2, 1, 0, 3}, {6, 2, 1, 5, 7, 3, 0, 4}},
      {{7, 6, 5, 4, 3, 2, 1, 0}, {7, 4, 0, 3, 6, 5, 1, 2}, {7, 3, 2, 6, 4, 0, 1, 5}}};

  const std::vector<std::vector<std::vector<unsigned int>>> preset_face_indices = {
      {{0, 1, 2, 3, 4, 5}, {4, 0, 3, 5, 1, 2}, {1, 4, 5, 2, 0, 3}},
      {{1, 0, 4, 5, 2, 3}, {0, 2, 3, 4, 1, 5}, {2, 1, 5, 3, 0, 4}},
      {{0, 3, 4, 1, 2, 5}, {2, 0, 1, 5, 3, 4}, {3, 2, 5, 4, 0, 1}},
      {{3, 0, 2, 5, 4, 1}, {0, 4, 1, 2, 3, 5}, {4, 3, 5, 1, 0, 2}},
      {{1, 5, 2, 0, 4, 3}, {5, 4, 3, 2, 1, 0}, {4, 1, 0, 3, 5, 2}},
      {{5, 1, 4, 3, 2, 0}, {2, 5, 3, 0, 1, 4}, {1, 2, 0, 4, 5, 3}},
      {{3, 5, 4, 0, 2, 1}, {5, 2, 1, 4, 3, 0}, {2, 3, 0, 1, 5, 4}},
      {{5, 3, 2, 1, 4, 0}, {4, 5, 1, 0, 3, 2}, {3, 4, 0, 2, 5, 1}}};

  if (min_id_index > 7 || sec_min_pos > 2)
    mooseError("The input node index is out of range.");
  else
  {
    // index: new face index; value: old face index
    face_rotation = preset_face_indices[min_id_index][sec_min_pos];
    node_rotation = preset_indices[min_id_index][sec_min_pos];
  }
}

nodeRotationPRISM6()

void MooseMeshElementConversionUtils::nodeRotationPRISM6	(	unsigned int	min_id_index,
		std::vector< unsigned int > &	face_rotation,
		std::vector< unsigned int > &	node_rotation
	)

Rotate a PRISM6 element nodes to ensure that the node with the minimum id is the first node.

Parameters

min_id_index	The index of the node, within the prism nodes, with the minimum id
face_rotation	A vector to record the rotation of the faces of the PRISM6 element
node_rotation	a vector of node indices that can form a PRISM6 element

Definition at line 414 of file MooseMeshElementConversionUtils.C.

Referenced by prismNodesToTetNodesDeterminer().

{
  const std::vector<std::vector<unsigned int>> preset_indices = {{0, 1, 2, 3, 4, 5},
                                                                 {1, 2, 0, 4, 5, 3},
                                                                 {2, 0, 1, 5, 3, 4},
                                                                 {3, 5, 4, 0, 2, 1},
                                                                 {4, 3, 5, 1, 0, 2},
                                                                 {5, 4, 3, 2, 1, 0}};

  const std::vector<std::vector<unsigned int>> preset_face_indices = {{0, 1, 2, 3, 4},
                                                                      {0, 2, 3, 1, 4},
                                                                      {0, 3, 1, 2, 4},
                                                                      {4, 3, 2, 1, 0},
                                                                      {4, 1, 3, 2, 0},
                                                                      {4, 2, 1, 3, 0}};

  if (min_id_index > 5)
    mooseError("The input node index is out of range.");
  else
  {
    // index: new face index; value: old face index
    face_rotation = preset_face_indices[min_id_index];
    node_rotation = preset_indices[min_id_index];
  }
}

nodeRotationPYRAMID5()

void MooseMeshElementConversionUtils::nodeRotationPYRAMID5	(	unsigned int	min_id_index,
		std::vector< unsigned int > &	face_rotation,
		std::vector< unsigned int > &	node_rotation
	)

Rotate a PYRAMID5 element nodes to ensure that the node with the minimum id is the first node for the bottom face.

Parameters

min_id_index	The index of the node, within the pyramid nodes, with the minimum id for the bottom face
face_rotation	A vector to record the rotation of the faces of the PYRAMID5 element
node_rotation	a vector of node indices that can form a PYRAMID5 element

Definition at line 515 of file MooseMeshElementConversionUtils.C.

Referenced by pyramidNodesToTetNodesDeterminer().

{
  const std::vector<std::vector<unsigned int>> preset_indices = {
      {0, 1, 2, 3, 4}, {1, 2, 3, 0, 4}, {2, 3, 0, 1, 4}, {3, 0, 1, 2, 4}};

  const std::vector<std::vector<unsigned int>> preset_face_indices = {
      {0, 1, 2, 3, 4}, {1, 2, 3, 0, 4}, {2, 3, 0, 1, 4}, {3, 0, 1, 2, 4}};

  if (min_id_index > 3)
    mooseError("The input node index is out of range.");
  else
  {
    // index: new face index; value: old face index
    face_rotation = preset_face_indices[min_id_index];
    node_rotation = preset_indices[min_id_index];
  }
}

prismElemSplitter() [1/2]

void MooseMeshElementConversionUtils::prismElemSplitter	(	MeshBase &	mesh,
		const std::vector< libMesh::BoundaryInfo::BCTuple > &	bdry_side_list,
		const dof_id_type	elem_id,
		std::vector< dof_id_type > &	converted_elems_ids
	)

Split a PRISM6 element into three TET4 elements.

Parameters

mesh	The mesh to be modified
bdry_side_list	A list that contains the boundary information of the original mesh
elem_id	The id of the element to be split
converted_elems_ids	a vector to record the ids of the newly created TET4 elements

prismElemSplitter() [2/2]

void MooseMeshElementConversionUtils::prismElemSplitter	(	MeshBase &	mesh,
		const std::vector< libMesh::BoundaryInfo::BCTuple > &	bdry_side_list,
		const dof_id_type	elem_id,
		std::vector< dof_id_type > &	converted_elems_ids
	)

Definition at line 98 of file MooseMeshElementConversionUtils.C.

Referenced by convert3DMeshToAllTet4().

{
  // Build boundary information of the mesh
  BoundaryInfo & boundary_info = mesh.get_boundary_info();
  // Create a list of sidesets involving the element to be split
  std::vector<std::vector<boundary_id_type>> elem_side_list;
  elementBoundaryInfoCollector(bdry_side_list, elem_id, 5, elem_side_list);

  const unsigned int n_elem_extra_ids = mesh.n_elem_integers();
  std::vector<dof_id_type> exist_extra_ids(n_elem_extra_ids);

  // Record all the element extra integers of the original quad element
  for (unsigned int j = 0; j < n_elem_extra_ids; j++)
    exist_extra_ids[j] = mesh.elem_ptr(elem_id)->get_extra_integer(j);

  std::vector<const Node *> elem_node_list = {mesh.elem_ptr(elem_id)->node_ptr(0),
                                              mesh.elem_ptr(elem_id)->node_ptr(1),
                                              mesh.elem_ptr(elem_id)->node_ptr(2),
                                              mesh.elem_ptr(elem_id)->node_ptr(3),
                                              mesh.elem_ptr(elem_id)->node_ptr(4),
                                              mesh.elem_ptr(elem_id)->node_ptr(5)};
  std::vector<std::vector<unsigned int>> rotated_tet_face_indices;
  std::vector<std::vector<const Node *>> optimized_node_list;
  prismNodesToTetNodesDeterminer(elem_node_list, rotated_tet_face_indices, optimized_node_list);

  std::vector<Elem *> elems_Tet4;
  for (const auto i : index_range(optimized_node_list))
  {
    auto new_elem = std::make_unique<Tet4>();
    new_elem->set_node(0, const_cast<Node *>(optimized_node_list[i][0]));
    new_elem->set_node(1, const_cast<Node *>(optimized_node_list[i][1]));
    new_elem->set_node(2, const_cast<Node *>(optimized_node_list[i][2]));
    new_elem->set_node(3, const_cast<Node *>(optimized_node_list[i][3]));
    new_elem->subdomain_id() = mesh.elem_ptr(elem_id)->subdomain_id();
    elems_Tet4.push_back(mesh.add_elem(std::move(new_elem)));
    converted_elems_ids.push_back(elems_Tet4.back()->id());

    for (unsigned int j = 0; j < 4; j++)
    {
      // A prism element has 5 faces indexed from 0 to 4
      // a <4 value indicates that the face of the tet element corresponds to the face of the
      // original prism; a =5 value means the face of the tet is an interior face of the prism
      if (rotated_tet_face_indices[i][j] < 5)
      {
        for (const auto & side_info : elem_side_list[rotated_tet_face_indices[i][j]])
          boundary_info.add_side(elems_Tet4.back(), j, side_info);
      }
    }
  }

  // Retain element extra integers
  for (unsigned int i = 0; i < 3; i++)
    for (unsigned int j = 0; j < n_elem_extra_ids; j++)
    {
      elems_Tet4[i]->set_extra_integer(j, exist_extra_ids[j]);
    }
}

prismNodesToTetNodesDeterminer() [1/2]

void MooseMeshElementConversionUtils::prismNodesToTetNodesDeterminer	(	std::vector< const Node *> &	prism_nodes,
		std::vector< std::vector< unsigned int >> &	rotated_tet_face_indices,
		std::vector< std::vector< const Node *>> &	tet_nodes_list
	)

For a rotated nodes that can form a PRISM6 element, create a series of four-node set that can form TET4 elements to replace the original PRISM6 element.

All the QUAD4 face of the PRISM6 element will be split by the diagonal line that involves the node with the minimum id of that face.

Parameters

prism_nodes	A vector of pointers to the nodes that can form a PRISM6 element
rotated_tet_face_indices	A vector of vectors of the original face indices of the PRISM6 element corresponding to the faces of the newly created TET4 elements
tet_nodes_list	a vector of vectors of pointers to the nodes that can form TET4 elements

Referenced by CutMeshByLevelSetGeneratorBase::tet4ElemCutter().

prismNodesToTetNodesDeterminer() [2/2]

void MooseMeshElementConversionUtils::prismNodesToTetNodesDeterminer	(	std::vector< const Node *> &	prism_nodes,
		std::vector< std::vector< unsigned int >> &	rotated_tet_face_indices,
		std::vector< std::vector< const Node *>> &	tet_nodes_list
	)

Definition at line 443 of file MooseMeshElementConversionUtils.C.

Referenced by prismElemSplitter().

{
  // Find the node with the minimum id
  std::vector<dof_id_type> node_ids(6);
  for (unsigned int i = 0; i < 6; i++)
    node_ids[i] = prism_nodes[i]->id();

  const unsigned int min_node_id_index = std::distance(
      std::begin(node_ids), std::min_element(std::begin(node_ids), std::end(node_ids)));

  // Rotate the node and face indices based on the identified minimum node
  // After the rotation, we guarantee that the minimum node is the first node (Node 0)
  // This makes the splitting process simpler
  std::vector<unsigned int> face_rotation;
  std::vector<unsigned int> rotated_indices;
  nodeRotationPRISM6(min_node_id_index, face_rotation, rotated_indices);
  std::vector<const Node *> rotated_prism_nodes;
  for (unsigned int i = 0; i < 6; i++)
    rotated_prism_nodes.push_back(prism_nodes[rotated_indices[i]]);

  std::vector<const Node *> key_quad_nodes = {rotated_prism_nodes[1],
                                              rotated_prism_nodes[2],
                                              rotated_prism_nodes[5],
                                              rotated_prism_nodes[4]};

  // Find the selection of each face's cutting direction
  const bool diagonal_direction = quadFaceDiagonalDirection(key_quad_nodes);

  // Based on the determined splitting directions of all the faces, determine the nodes of each
  // resulting TET4 elements after the splitting.
  std::vector<std::vector<unsigned int>> tet_face_indices;
  const auto tet_nodes_set = tetNodesForPrism(diagonal_direction, tet_face_indices);
  for (const auto & tet_face_index : tet_face_indices)
  {
    rotated_tet_face_indices.push_back(std::vector<unsigned int>());
    for (const auto & face_index : tet_face_index)
    {
      if (face_index < 5)
        rotated_tet_face_indices.back().push_back(face_rotation[face_index]);
      else
        rotated_tet_face_indices.back().push_back(5);
    }
  }

  for (const auto & tet_nodes : tet_nodes_set)
  {
    tet_nodes_list.push_back(std::vector<const Node *>());
    for (const auto & tet_node : tet_nodes)
      tet_nodes_list.back().push_back(rotated_prism_nodes[tet_node]);
  }
}

pyramidElemSplitter() [1/2]

void MooseMeshElementConversionUtils::pyramidElemSplitter	(	MeshBase &	mesh,
		const std::vector< libMesh::BoundaryInfo::BCTuple > &	bdry_side_list,
		const dof_id_type	elem_id,
		std::vector< dof_id_type > &	converted_elems_ids
	)

Split a PYRAMID5 element into two TET4 elements.

Parameters

mesh	The mesh to be modified
bdry_side_list	A list that contains the boundary information of the original mesh
elem_id	The id of the element to be split
converted_elems_ids	a vector to record the ids of the newly created TET4 elements

pyramidElemSplitter() [2/2]

void MooseMeshElementConversionUtils::pyramidElemSplitter	(	MeshBase &	mesh,
		const std::vector< libMesh::BoundaryInfo::BCTuple > &	bdry_side_list,
		const dof_id_type	elem_id,
		std::vector< dof_id_type > &	converted_elems_ids
	)

Definition at line 160 of file MooseMeshElementConversionUtils.C.

Referenced by convert3DMeshToAllTet4().

{
  // Build boundary information of the mesh
  BoundaryInfo & boundary_info = mesh.get_boundary_info();
  // Create a list of sidesets involving the element to be split
  std::vector<std::vector<boundary_id_type>> elem_side_list;
  elementBoundaryInfoCollector(bdry_side_list, elem_id, 5, elem_side_list);

  const unsigned int n_elem_extra_ids = mesh.n_elem_integers();
  std::vector<dof_id_type> exist_extra_ids(n_elem_extra_ids);
  // Record all the element extra integers of the original quad element
  for (unsigned int j = 0; j < n_elem_extra_ids; j++)
    exist_extra_ids[j] = mesh.elem_ptr(elem_id)->get_extra_integer(j);

  std::vector<const Node *> elem_node_list = {mesh.elem_ptr(elem_id)->node_ptr(0),
                                              mesh.elem_ptr(elem_id)->node_ptr(1),
                                              mesh.elem_ptr(elem_id)->node_ptr(2),
                                              mesh.elem_ptr(elem_id)->node_ptr(3),
                                              mesh.elem_ptr(elem_id)->node_ptr(4)};
  std::vector<std::vector<unsigned int>> rotated_tet_face_indices;
  std::vector<std::vector<const Node *>> optimized_node_list;
  pyramidNodesToTetNodesDeterminer(elem_node_list, rotated_tet_face_indices, optimized_node_list);

  std::vector<Elem *> elems_Tet4;
  for (const auto i : index_range(optimized_node_list))
  {
    auto new_elem = std::make_unique<Tet4>();
    new_elem->set_node(0, const_cast<Node *>(optimized_node_list[i][0]));
    new_elem->set_node(1, const_cast<Node *>(optimized_node_list[i][1]));
    new_elem->set_node(2, const_cast<Node *>(optimized_node_list[i][2]));
    new_elem->set_node(3, const_cast<Node *>(optimized_node_list[i][3]));
    new_elem->subdomain_id() = mesh.elem_ptr(elem_id)->subdomain_id();
    elems_Tet4.push_back(mesh.add_elem(std::move(new_elem)));
    converted_elems_ids.push_back(elems_Tet4.back()->id());

    for (unsigned int j = 0; j < 4; j++)
    {
      // A pyramid element has 5 faces indexed from 0 to 4
      // a <4 value indicates that the face of the tet element corresponds to the face of the
      // original pyramid; a =5 value means the face of the tet is an interior face of the pyramid
      if (rotated_tet_face_indices[i][j] < 5)
      {
        for (const auto & side_info : elem_side_list[rotated_tet_face_indices[i][j]])
          boundary_info.add_side(elems_Tet4.back(), j, side_info);
      }
    }
  }

  // Retain element extra integers
  for (unsigned int i = 0; i < 2; i++)
    for (unsigned int j = 0; j < n_elem_extra_ids; j++)
    {
      elems_Tet4[i]->set_extra_integer(j, exist_extra_ids[j]);
    }
}

pyramidNodesToTetNodesDeterminer() [1/2]

void MooseMeshElementConversionUtils::pyramidNodesToTetNodesDeterminer	(	std::vector< const Node *> &	pyramid_nodes,
		std::vector< std::vector< unsigned int >> &	rotated_tet_face_indices,
		std::vector< std::vector< const Node *>> &	tet_nodes_list
	)

For a rotated nodes that can form a PYRAMID5 element, create a series of four-node set that can form TET4 elements to replace the original PYRAMID5 element.

The QUAD4 face of the PYRAMID5 element will be split by the diagonal line that involves the node with the minimum id of that face.

Parameters

pyramid_nodes	A vector of pointers to the nodes that can form a PYRAMID5 element
rotated_tet_face_indices	A vector of vectors of the original face indices of the PYRAMID5 element corresponding to the faces of the newly created TET4 elements
tet_nodes_list	a vector of vectors of pointers to the nodes that can form TET4 elements

Referenced by CutMeshByLevelSetGeneratorBase::tet4ElemCutter().

pyramidNodesToTetNodesDeterminer() [2/2]

void MooseMeshElementConversionUtils::pyramidNodesToTetNodesDeterminer	(	std::vector< const Node *> &	pyramid_nodes,
		std::vector< std::vector< unsigned int >> &	rotated_tet_face_indices,
		std::vector< std::vector< const Node *>> &	tet_nodes_list
	)

Definition at line 536 of file MooseMeshElementConversionUtils.C.

Referenced by pyramidElemSplitter().

{
  // Find the node with the minimum id, ignoring the top node
  std::vector<dof_id_type> node_ids(4);
  for (unsigned int i = 0; i < 4; i++)
    node_ids[i] = pyramid_nodes[i]->id();

  const unsigned int min_node_id_index = std::distance(
      std::begin(node_ids), std::min_element(std::begin(node_ids), std::end(node_ids)));

  // Rotate the node and face indices based on the identified minimum nodes
  // After the rotation, we guarantee that the minimum node is the first node (Node 0)
  // This makes the splitting process simpler
  std::vector<unsigned int> face_rotation;
  std::vector<unsigned int> rotated_indices;
  nodeRotationPYRAMID5(min_node_id_index, face_rotation, rotated_indices);
  std::vector<const Node *> rotated_pyramid_nodes;
  for (unsigned int i = 0; i < 5; i++)
    rotated_pyramid_nodes.push_back(pyramid_nodes[rotated_indices[i]]);

  // There is only one quad face in a pyramid element, so the splitting selection is binary
  const std::vector<std::vector<unsigned int>> tet_nodes_set = {{0, 1, 2, 4}, {0, 2, 3, 4}};
  const std::vector<std::vector<unsigned int>> tet_face_indices = {{4, 0, 1, 5}, {4, 5, 2, 3}};

  // Based on the determined splitting direction, determine the nodes of each resulting TET4
  // elements after the splitting.
  for (const auto & tet_face_index : tet_face_indices)
  {
    rotated_tet_face_indices.push_back(std::vector<unsigned int>());
    for (const auto & face_index : tet_face_index)
    {
      if (face_index < 5)
        rotated_tet_face_indices.back().push_back(face_rotation[face_index]);
      else
        rotated_tet_face_indices.back().push_back(5);
    }
  }

  for (const auto & tet_nodes : tet_nodes_set)
  {
    tet_nodes_list.push_back(std::vector<const Node *>());
    for (const auto & tet_node : tet_nodes)
      tet_nodes_list.back().push_back(rotated_pyramid_nodes[tet_node]);
  }
}

quadFaceDiagonalDirection() [1/2]

bool MooseMeshElementConversionUtils::quadFaceDiagonalDirection

(

const std::vector< const Node *> &

quad_nodes

)

For a QUAD4 element, determine the direction of the diagonal line that involves the node with the minimum id of that element.

Parameters

quad_nodes

A vector of pointers to the nodes that can form a QUAD4 element

Returns

a boolean value indicating the direction of the diagonal line

quadFaceDiagonalDirection() [2/2]

bool MooseMeshElementConversionUtils::quadFaceDiagonalDirection

(

const std::vector< const Node *> &

quad_nodes

)

Definition at line 311 of file MooseMeshElementConversionUtils.C.

Referenced by prismNodesToTetNodesDeterminer(), and quadFaceDiagonalDirectionsHex().

{
  const std::vector<dof_id_type> node_ids = {
      quad_nodes[0]->id(), quad_nodes[1]->id(), quad_nodes[2]->id(), quad_nodes[3]->id()};
  const unsigned int min_id_index = std::distance(
      std::begin(node_ids), std::min_element(std::begin(node_ids), std::end(node_ids)));
  if (min_id_index == 0 || min_id_index == 2)
    return true;
  else
    return false;
}

quadFaceDiagonalDirectionsHex() [1/2]

std::vector<bool> MooseMeshElementConversionUtils::quadFaceDiagonalDirectionsHex

(

const std::vector< const Node *> &

hex_nodes

)

For a HEX8 element, determine the direction of the diagonal line of each face that involves the node with the minimum id of that face.

Parameters

hex_nodes

A vector of pointers to the nodes that can form a HEX8 element

Returns

a vector of boolean values indicating the direction of the diagonal line of each face

quadFaceDiagonalDirectionsHex() [2/2]

std::vector<bool> MooseMeshElementConversionUtils::quadFaceDiagonalDirectionsHex

(

const std::vector< const Node *> &

hex_nodes

)

Definition at line 293 of file MooseMeshElementConversionUtils.C.

Referenced by hexNodesToTetNodesDeterminer().

{
  // Bottom/Top; Front/Back; Right/Left
  const std::vector<std::vector<unsigned int>> face_indices = {
      {0, 1, 2, 3}, {4, 5, 6, 7}, {0, 1, 5, 4}, {2, 3, 7, 6}, {1, 2, 6, 5}, {3, 0, 4, 7}};
  std::vector<bool> diagonal_directions;
  for (const auto & face_index : face_indices)
  {
    std::vector<const Node *> quad_nodes = {hex_nodes[face_index[0]],
                                            hex_nodes[face_index[1]],
                                            hex_nodes[face_index[2]],
                                            hex_nodes[face_index[3]]};
    diagonal_directions.push_back(quadFaceDiagonalDirection(quad_nodes));
  }
  return diagonal_directions;
}

retainEEID() [1/2]

void MooseMeshElementConversionUtils::retainEEID	(	MeshBase &	mesh,
		const dof_id_type &	elem_id,
		Elem *	new_elem_ptr
	)

Retain the extra integer of the original element in a new element.

Parameters

mesh	The mesh containing the element
elem_id	The ID of the original element
new_elem_ptr	The pointer to the new element that will retain the extra integer

retainEEID() [2/2]

void MooseMeshElementConversionUtils::retainEEID	(	MeshBase &	mesh,
		const dof_id_type &	elem_id,
		Elem *	new_elem_ptr
	)

Definition at line 1004 of file MooseMeshElementConversionUtils.C.

Referenced by convertPyramid5Elem(), createUnitPyramid5FromHex8(), createUnitTet4FromHex8(), and createUnitTet4FromPrism6().

{
  const unsigned int n_eeid = mesh.n_elem_integers();
  for (const auto & i : make_range(n_eeid))
    new_elem_ptr->set_extra_integer(i, mesh.elem_ptr(elem_id)->get_extra_integer(i));
}

tetNodesForHex()

std::vector< std::vector< unsigned int > > MooseMeshElementConversionUtils::tetNodesForHex	(	const std::vector< bool >	diagonal_directions,
		std::vector< std::vector< unsigned int >> &	tet_face_indices
	)

Creates sets of four nodes indices that can form TET4 elements to replace the original HEX8 element.

Parameters

diagonal_directions	A vector of boolean values indicating the direction of the diagonal line of each face; true means the diagonal line is connecting node 0 and node 2, false means the diagonal line is connecting node 1 and node 3 of that quad face
tet_face_indices	A vector of vectors of the original face indices of the HEX8 element corresponding to the faces of the newly created TET4 elements

Returns

a vector of vectors of node indices that can form TET4 elements

Definition at line 324 of file MooseMeshElementConversionUtils.C.

Referenced by hexNodesToTetNodesDeterminer().

{
  const std::vector<std::vector<bool>> possible_inputs = {{true, true, true, true, true, false},
                                                          {true, true, true, true, false, false},
                                                          {true, true, true, false, true, false},
                                                          {true, false, true, true, true, false},
                                                          {true, false, true, true, false, false},
                                                          {true, false, true, false, true, false},
                                                          {true, false, true, false, false, false}};

  const unsigned int input_index = std::distance(
      std::begin(possible_inputs),
      std::find(std::begin(possible_inputs), std::end(possible_inputs), diagonal_directions));

  switch (input_index)
  {
    case 0:
      tet_face_indices = {
          {0, 6, 2, 6}, {1, 6, 2, 6}, {1, 6, 5, 6}, {0, 6, 3, 4}, {6, 6, 3, 6}, {6, 4, 5, 6}};
      return {{0, 1, 2, 6}, {0, 5, 1, 6}, {0, 4, 5, 6}, {0, 2, 3, 7}, {0, 6, 2, 7}, {0, 4, 6, 7}};
    case 1:
      tet_face_indices = {
          {0, 1, 2, 6}, {6, 6, 2, 6}, {6, 6, 5, 1}, {0, 6, 3, 4}, {6, 6, 3, 6}, {6, 4, 5, 6}};
      return {{0, 1, 2, 5}, {0, 2, 6, 5}, {0, 6, 4, 5}, {0, 2, 3, 7}, {0, 6, 2, 7}, {0, 4, 6, 7}};
    case 2:
      tet_face_indices = {
          {0, 6, 2, 6}, {1, 6, 2, 6}, {1, 6, 5, 6}, {4, 6, 5, 6}, {4, 6, 3, 6}, {0, 6, 3, 6}};
      return {{0, 1, 2, 6}, {0, 5, 1, 6}, {0, 4, 5, 6}, {0, 7, 4, 6}, {0, 3, 7, 6}, {0, 2, 3, 6}};
    case 3:
      tet_face_indices = {
          {4, 6, 5, 1}, {6, 6, 5, 6}, {6, 1, 2, 6}, {4, 0, 3, 6}, {6, 6, 3, 6}, {6, 6, 2, 0}};
      return {{0, 7, 4, 5}, {0, 6, 7, 5}, {0, 1, 6, 5}, {0, 3, 7, 2}, {0, 7, 6, 2}, {0, 6, 1, 2}};
    case 4:
      tet_face_indices = {{0, 1, 2, 6}, {0, 6, 3, 4}, {5, 4, 6, 1}, {5, 6, 3, 2}, {6, 6, 6, 6}};
      return {{0, 1, 2, 5}, {0, 2, 3, 7}, {4, 7, 5, 0}, {5, 7, 6, 2}, {0, 2, 7, 5}};
    case 5:
      tet_face_indices = {
          {4, 6, 5, 1}, {6, 6, 5, 6}, {6, 1, 2, 6}, {2, 6, 6, 0}, {3, 6, 6, 0}, {3, 6, 6, 4}};
      return {{0, 7, 4, 5}, {0, 6, 7, 5}, {0, 1, 6, 5}, {1, 6, 2, 0}, {2, 6, 3, 0}, {3, 6, 7, 0}};
    case 6:
      tet_face_indices = {
          {1, 4, 5, 6}, {6, 6, 5, 6}, {6, 6, 3, 4}, {1, 6, 2, 0}, {6, 6, 2, 6}, {6, 0, 3, 6}};
      return {{0, 4, 5, 7}, {0, 5, 6, 7}, {0, 6, 3, 7}, {0, 5, 1, 2}, {0, 6, 5, 2}, {0, 3, 6, 2}};
    default:
      mooseError("Unexpected input.");
  }
}

tetNodesForPrism()

std::vector< std::vector< unsigned int > > MooseMeshElementConversionUtils::tetNodesForPrism	(	const bool	diagonal_direction,
		std::vector< std::vector< unsigned int >> &	tet_face_indices
	)

Creates sets of four nodes indices that can form TET4 elements to replace the original PRISM6 element.

Parameters

diagonal_direction	A boolean value indicating the direction of the diagonal line of Face 2
tet_face_indices	A vector of vectors of the original face indices of the PRISM6 element corresponding to the faces of the newly created TET4 elements

Returns

a vector of vectors of node indices that can form TET4 elements

Definition at line 498 of file MooseMeshElementConversionUtils.C.

Referenced by prismNodesToTetNodesDeterminer().

{

  if (diagonal_direction)
  {
    tet_face_indices = {{4, 3, 5, 1}, {2, 1, 5, 5}, {2, 5, 3, 0}};
    return {{3, 5, 4, 0}, {1, 4, 5, 0}, {1, 5, 2, 0}};
  }
  else
  {
    tet_face_indices = {{4, 3, 5, 1}, {2, 1, 5, 0}, {2, 5, 5, 3}};
    return {{3, 5, 4, 0}, {1, 4, 2, 0}, {2, 4, 5, 0}};
  }
}

transitionLayerGenerator() [1/2]

void MooseMeshElementConversionUtils::transitionLayerGenerator	(	MeshBase &	mesh,
		const std::vector< BoundaryName > &	boundary_names,
		const unsigned int	conversion_element_layer_number,
		const bool	external_boundaries_checking
	)

Generate a transition layer of elements with TRI3 surfaces on the given boundaries.

Parameters

mesh	The mesh to be modified
boundary_names	A vector of boundary names on which the transition layer will be generated
conversion_element_layer_number	The number of element layers to be converted on the given boundaries.
external_boundaries_checking	Whether to check if the provided boundaries are external boundaries

Referenced by BoundaryElementConversionGenerator::generate(), and XYZDelaunayGenerator::generate().

transitionLayerGenerator() [2/2]

void MooseMeshElementConversionUtils::transitionLayerGenerator	(	MeshBase &	mesh,
		const std::vector< BoundaryName > &	boundary_names,
		const unsigned int	conversion_element_layer_number,
		const bool	external_boundaries_checking
	)

Definition at line 1012 of file MooseMeshElementConversionUtils.C.

{
  mooseAssert(mesh.is_serial(),
              "This method only supports serial meshes. If you are calling this method with a "
              "distributed mesh, please serialize it first.");
  // The base subdomain ID to shift the original elements because of the element type change
  const auto sid_shift_base = MooseMeshUtils::getNextFreeSubdomainID(mesh);
  // The maximum subdomain ID that would be involved is sid_shift_base * 3, we would like to make
  // sure it would not overflow
  if (sid_shift_base * 3 > std::numeric_limits<subdomain_id_type>::max())
    throw MooseException("subdomain id overflow");

  // It would be convenient to have a single boundary id instead of a vector.
  const auto uniform_tmp_bid = MooseMeshUtils::getNextFreeBoundaryID(mesh);

  // Check the boundaries and merge them
  std::vector<boundary_id_type> boundary_ids;
  for (const auto & sideset : boundary_names)
  {
    if (!MooseMeshUtils::hasBoundaryName(mesh, sideset))
      throw MooseException("The provided boundary '", sideset, "' was not found within the mesh");
    boundary_ids.push_back(MooseMeshUtils::getBoundaryID(sideset, mesh));
    MooseMeshUtils::changeBoundaryId(mesh, boundary_ids.back(), uniform_tmp_bid, false);
  }

  auto & sideset_map = mesh.get_boundary_info().get_sideset_map();
  auto side_list = mesh.get_boundary_info().build_side_list();

  std::vector<std::pair<dof_id_type, std::vector<unsigned int>>> elems_list;
  std::vector<std::set<dof_id_type>> layered_elems_list;
  layered_elems_list.push_back(std::set<dof_id_type>());
  // Need to collect the list of elements that need to be converted
  if (!mesh.is_prepared())
    mesh.find_neighbors();
  for (const auto & side_info : side_list)
  {
    if (std::get<2>(side_info) == uniform_tmp_bid)
    {
      // Check if the involved side is TRI3 or QUAD4
      // We do not limit the element type in the input mesh
      // As long as the involved boundaries only consist of TRI3 and QUAD4 sides,
      // this generator will work
      // As the side element of a quadratic element is still a linear element in libMesh,
      // we need to check the element's default_side_order() first
      if (mesh.elem_ptr(std::get<0>(side_info))->default_side_order() != 1)
        throw MooseException(
            "The provided boundary set contains non-linear side elements, which is not supported.");
      const auto side_type =
          mesh.elem_ptr(std::get<0>(side_info))->side_ptr(std::get<1>(side_info))->type();
      layered_elems_list.back().emplace(std::get<0>(side_info));
      // If we enforce external boundary, then a non-null neighbor leads to an error
      // Otherwise, we need to convert both sides, that means the neighbor information also needs to
      // be added
      const auto neighbor_ptr =
          mesh.elem_ptr(std::get<0>(side_info))->neighbor_ptr(std::get<1>(side_info));
      if (neighbor_ptr)
      {
        if (external_boundaries_checking)
          throw MooseException(
              "The provided boundary contains non-external sides, which is required when "
              "external_boundaries_checking is enabled.");
        else
          layered_elems_list.back().emplace(neighbor_ptr->id());
      }

      if (conversion_element_layer_number == 1)
      {
        if (side_type == TRI3)
          continue; // Already TRI3, no need to convert
        else if (side_type == QUAD4)
        {
          auto pit = std::find_if(elems_list.begin(),
                                  elems_list.end(),
                                  [elem_id = std::get<0>(side_info)](const auto & p)
                                  { return p.first == elem_id; });
          if (elems_list.size() && pit != elems_list.end())
          {
            pit->second.push_back(std::get<1>(side_info));
          }
          else
            elems_list.push_back(std::make_pair(
                std::get<0>(side_info), std::vector<unsigned int>({std::get<1>(side_info)})));
          if (neighbor_ptr)
          {
            auto sit = std::find_if(elems_list.begin(),
                                    elems_list.end(),
                                    [elem_id = neighbor_ptr->id()](const auto & p)
                                    { return p.first == elem_id; });
            if (elems_list.size() && sit != elems_list.end())
            {
              sit->second.push_back(
                  neighbor_ptr->which_neighbor_am_i(mesh.elem_ptr(std::get<0>(side_info))));
            }
            else
            {
              elems_list.push_back(std::make_pair(
                  neighbor_ptr->id(),
                  std::vector<unsigned int>(
                      {neighbor_ptr->which_neighbor_am_i(mesh.elem_ptr(std::get<0>(side_info)))})));
            }
          }
        }
        else if (side_type == C0POLYGON)
          throw MooseException("The provided boundary set contains C0POLYGON side elements, which "
                               "is not supported.");
        else
          mooseAssert(false,
                      "Impossible scenario: a linear non-polygon side element that is neither TRI3 "
                      "nor QUAD4.");
      }
    }
  }

  if (conversion_element_layer_number > 1)
  {
    std::set<dof_id_type> total_elems_set(layered_elems_list.back());

    while (layered_elems_list.back().size() &&
           layered_elems_list.size() < conversion_element_layer_number)
    {
      layered_elems_list.push_back(std::set<dof_id_type>());
      for (const auto & elem_id : *(layered_elems_list.end() - 2))
      {
        for (const auto & i_side : make_range(mesh.elem_ptr(elem_id)->n_sides()))
        {
          if (mesh.elem_ptr(elem_id)->neighbor_ptr(i_side) != nullptr)
          {
            const auto & neighbor_id = mesh.elem_ptr(elem_id)->neighbor_ptr(i_side)->id();
            if (total_elems_set.find(neighbor_id) == total_elems_set.end())
            {
              layered_elems_list.back().emplace(neighbor_id);
              total_elems_set.emplace(neighbor_id);
            }
          }
        }
      }
    }
  }

  // Remove the last empty layer
  if (layered_elems_list.back().empty())
    layered_elems_list.pop_back();

  if (conversion_element_layer_number > layered_elems_list.size())
    throw MooseException("There is fewer layers of elements in the input mesh than the requested "
                         "number of layers to convert.");

  std::vector<std::pair<dof_id_type, bool>> original_elems;
  // construct a list of the element to convert to tet4
  // Convert at most n_layer_conversion layers of elements
  const unsigned int n_layer_conversion = layered_elems_list.size() - 1;
  for (unsigned int i = 0; i < n_layer_conversion; ++i)
    for (const auto & elem_id : layered_elems_list[i])
    {
      // As these elements will become TET4 elements, we need to shift the subdomain ID
      // But we do not need to convert original TET4 elements
      if (mesh.elem_ptr(elem_id)->type() != TET4)
      {
        original_elems.push_back(std::make_pair(elem_id, false));
        mesh.elem_ptr(elem_id)->subdomain_id() += sid_shift_base;
      }
    }

  const subdomain_id_type block_id_to_remove = sid_shift_base * 3;

  std::vector<dof_id_type> converted_elems_ids_to_track;
  MooseMeshElementConversionUtils::convert3DMeshToAllTet4(
      mesh, original_elems, converted_elems_ids_to_track, block_id_to_remove, false);

  // Now we need to convert the elements on the transition layer
  // First, we need to identify that the sides that are on the interface with previous layer (all
  // TET layers)
  if (n_layer_conversion)
  {
    for (const auto & elem_id : layered_elems_list[n_layer_conversion])
    {
      for (const auto & i_side : make_range(mesh.elem_ptr(elem_id)->n_sides()))
      {
        if (mesh.elem_ptr(elem_id)->neighbor_ptr(i_side) != nullptr &&
            layered_elems_list[n_layer_conversion - 1].count(
                mesh.elem_ptr(elem_id)->neighbor_ptr(i_side)->id()))
        {
          if (elems_list.size() && elems_list.back().first == elem_id)
            elems_list.back().second.push_back(i_side);
          else
            elems_list.push_back(std::make_pair(elem_id, std::vector<unsigned int>({i_side})));
        }
      }
    }
  }

  // Now convert the elements
  for (const auto & elem_info : elems_list)
  {
    // Find the involved sidesets of the element so that we can retain them
    std::vector<std::vector<boundary_id_type>> elem_side_info(
        mesh.elem_ptr(elem_info.first)->n_sides());
    auto side_range = sideset_map.equal_range(mesh.elem_ptr(elem_info.first));
    for (auto i = side_range.first; i != side_range.second; ++i)
      elem_side_info[i->second.first].push_back(i->second.second);

    MooseMeshElementConversionUtils::convertElem(
        mesh, elem_info.first, elem_info.second, elem_side_info, sid_shift_base);
  }

  // delete the original elements that were converted
  for (const auto & elem_info : elems_list)
    mesh.elem_ptr(elem_info.first)->subdomain_id() = block_id_to_remove;
  for (auto elem_it = mesh.active_subdomain_elements_begin(block_id_to_remove);
       elem_it != mesh.active_subdomain_elements_end(block_id_to_remove);
       elem_it++)
    mesh.delete_elem(*elem_it);
  // delete temporary boundary id
  mesh.get_boundary_info().remove_id(uniform_tmp_bid);

  mesh.contract();
  mesh.set_isnt_prepared();
}