Moose::MFEM::ComplexEquationSystem Class Reference

#include <ComplexEquationSystem.h>

Inheritance diagram for Moose::MFEM::ComplexEquationSystem:

Public Member Functions
	ComplexEquationSystem ()=default
	~ComplexEquationSystem ()=default
virtual void	Init (GridFunctions &gridfunctions, ComplexGridFunctions &cmplx_gridfunctions, mfem::AssemblyLevel assembly_level) override
	Initialise. More...
virtual void	Mult (const mfem::Vector &x, mfem::Vector &y) const override
	Nonlinear Mult (Used by Newton-solver not necessarily nonlinear) More...
virtual void	BuildEquationSystem () override
	Build all forms comprising this EquationSystem. More...
virtual void	BuildLinearForms () override
	Build linear forms and eliminate constrained DoFs. More...
virtual void	BuildBilinearForms () override
	Build bilinear forms (diagonal Jacobian contributions) More...
virtual void	ApplyComplexEssentialBC (const std::string &var_name, mfem::ParComplexGridFunction &trial_gf, mfem::Array< int > &global_ess_markers)
	Apply essential BC(s) associated with var_name to set true DoFs of trial_gf and update markers of all essential boundaries. More...
virtual void	ApplyEssentialBCs () override
	Update all essentially constrained true DoF markers and values on boundaries. More...
void	AddComplexKernel (std::shared_ptr< MFEMComplexKernel > kernel)
	Add complex kernels. More...
void	AddComplexIntegratedBC (std::shared_ptr< MFEMComplexIntegratedBC > bc)
	Add complex integrated BCs. More...
void	AddComplexEssentialBCs (std::shared_ptr< MFEMComplexEssentialBC > bc)
	Add complex essential BCs. More...
virtual void	FormSystemOperator (mfem::OperatorHandle &op, mfem::BlockVector &trueX, mfem::BlockVector &trueRHS) override
	Form matrix-free representation of system operator. More...
virtual void	FormSystemMatrix (mfem::OperatorHandle &op, mfem::BlockVector &trueX, mfem::BlockVector &trueRHS) override
	Form matrix representation of system operator as a HypreParMatrix. More...
virtual void	SetTrialVariablesFromTrueVectors (const mfem::BlockVector &trueX) const override
	Update variable from solution vector after solve. More...
template<class FormType >
void	ApplyDomainBLFIntegrators (const std::string &trial_var_name, const std::string &test_var_name, std::shared_ptr< FormType > form, NamedFieldsMap< NamedFieldsMap< std::vector< std::shared_ptr< MFEMComplexKernel >>>> &kernels_map)
	Template method for applying BilinearFormIntegrators on domains from kernels to a SesquilinearForm. More...
void	ApplyDomainLFIntegrators (const std::string &test_var_name, std::shared_ptr< mfem::ParComplexLinearForm > form, NamedFieldsMap< NamedFieldsMap< std::vector< std::shared_ptr< MFEMComplexKernel >>>> &kernels_map)
	Method for applying LinearFormIntegrators on domains from kernels to a ParComplexLinearForm. More...
template<class FormType >
void	ApplyBoundaryBLFIntegrators (const std::string &trial_var_name, const std::string &test_var_name, std::shared_ptr< FormType > form, NamedFieldsMap< NamedFieldsMap< std::vector< std::shared_ptr< MFEMComplexIntegratedBC >>>> &integrated_bc_map)
	Template method for applying BilinearFormIntegrators on boudaries from kernels to a SesquilinearForm. More...
void	ApplyBoundaryLFIntegrators (const std::string &test_var_name, std::shared_ptr< mfem::ParComplexLinearForm > form, NamedFieldsMap< NamedFieldsMap< std::vector< std::shared_ptr< MFEMComplexIntegratedBC >>>> &integrated_bc_map)
	Method for applying LinearFormIntegrators on boundaries from kernels to a ParComplexLinearForm. More...
virtual bool	Complex () const override
	Whether this a complex equation system. More...
virtual void	AddKernel (std::shared_ptr< MFEMKernel > kernel)
	Add kernels. More...
virtual void	AddIntegratedBC (std::shared_ptr< MFEMIntegratedBC > kernel)
virtual void	AddEssentialBC (std::shared_ptr< MFEMEssentialBC > bc)
	Add BC associated with essentially constrained DoFs on boundaries. More...
void	FormSystem (mfem::BlockVector &trueX, mfem::BlockVector &trueRHS)
	Assemble the linear part of the operator, assemble the right-hand side, apply essential and eliminated-variable constraints, and populate the true-DoF vectors used by the solve. More...
virtual void	ComputeNonlinearResidual (const mfem::Vector &u, mfem::Vector &residual) const
	Compute the contribution to the residual from nonlinear forms only. More...
mfem::Operator &	GetGradient (const mfem::Vector &u) const override
	Get Jacobian at the provided vector of true DoFs of trial variables. More...
void	SetSolverRequiresGradient (bool requires_gradient)
	Set whether the nonlinear solver driving this equation system requires Jacobian information. More...
const std::vector< std::string > &	GetTrialVarNames () const
const std::vector< std::string > &	GetTestVarNames () const
bool	Nonlinear () const
void	PrepareLinearSolver (LinearSolverBase &solver)
	Prepare the provided linear solver. More...

Protected Member Functions
virtual void	AddCoupledVariableNameIfMissing (const std::string &coupled_var_name)
	Add coupled variable to EquationSystem. More...
virtual void	AddEliminatedVariableNameIfMissing (const std::string &eliminated_var_name)
	Add eliminated variable to EquationSystem. More...
virtual void	AddTestVariableNameIfMissing (const std::string &test_var_name)
	Add test variable to EquationSystem. More...
virtual void	SetTrialVariableNames ()
	Set trial variable names from subset of coupled variables that have an associated test variable. More...
void	DeleteHBlocks ()
	Deletes the HypreParMatrix associated with any pointer stored in _h_blocks, and then proceeds to delete all dynamically allocated memory for _h_blocks itself, resetting all dimensions to zero. More...
void	DeleteJacobianBlocks ()
	Deletes the HypreParMatrix associated with any pointer stored in _jacobian_blocks, and then proceeds to delete all dynamically allocated memory for _jacobian_blocks itself, resetting all dimensions to zero. More...
bool	VectorContainsName (const std::vector< std::string > &the_vector, const std::string &name) const
virtual void	ApplyEssentialBC (const std::string &var_name, mfem::ParGridFunction &trial_gf, mfem::Array< int > &global_ess_markers)
	Apply essential BC(s) associated with var_name to set true DoFs of trial_gf and update markers of all essential boundaries. More...
virtual void	EliminateCoupledVariables ()
	Perform trivial eliminations of coupled variables lacking corresponding test variables. More...
virtual void	BuildNonlinearForms ()
	Build non-linear action forms. More...
virtual void	BuildMixedBilinearForms ()
	Build mixed bilinear forms (off-diagonal Jacobian contributions) More...
virtual void	FormLinearSystem (mfem::OperatorHandle &op, mfem::BlockVector &trueX, mfem::BlockVector &trueRHS)
	Form linear components of system based on on- and off-diagonal bilinear form contributions, populate solution and RHS vectors of true DoFs, and apply constraints. More...
void	FormJacobianMatrix (const mfem::Vector &u)
	Compute Jacobian matrix at the provided vector of true DoFs of trial variables. More...
template<class FormType >
void	ApplyDomainBLFIntegrators (const std::string &trial_var_name, const std::string &test_var_name, std::shared_ptr< FormType > form, NamedFieldsMap< NamedFieldsMap< std::vector< std::shared_ptr< MFEMKernel >>>> &kernels_map, std::optional< mfem::real_t > scale_factor=std::nullopt)
	Template method for applying BilinearFormIntegrators on domains from kernels to a BilinearForm, or MixedBilinearForm. More...
void	ApplyDomainLFIntegrators (const std::string &test_var_name, std::shared_ptr< mfem::ParLinearForm > form, NamedFieldsMap< NamedFieldsMap< std::vector< std::shared_ptr< MFEMKernel >>>> &kernels_map)
	Apply domain LinearFormIntegrators from kernels to the linear form associated with the supplied test variable. More...
void	ApplyDomainNLFIntegrators (const std::string &test_var_name, std::shared_ptr< mfem::ParNonlinearForm > form, NamedFieldsMap< NamedFieldsMap< std::vector< std::shared_ptr< MFEMKernel >>>> &kernels_map, std::optional< mfem::real_t > scale_factor=std::nullopt)
	Apply domain NonlinearFormIntegrators from kernels to the nonlinear form associated with the supplied test variable. More...
template<class FormType >
void	ApplyBoundaryBLFIntegrators (const std::string &trial_var_name, const std::string &test_var_name, std::shared_ptr< FormType > form, NamedFieldsMap< NamedFieldsMap< std::vector< std::shared_ptr< MFEMIntegratedBC >>>> &integrated_bc_map, std::optional< mfem::real_t > scale_factor=std::nullopt)
	Template method for applying BilinearFormIntegrators on boundaries from integrated boundary conditions to a BilinearForm, or MixedBilinearForm. More...
void	ApplyBoundaryLFIntegrators (const std::string &test_var_name, std::shared_ptr< mfem::ParLinearForm > form, NamedFieldsMap< NamedFieldsMap< std::vector< std::shared_ptr< MFEMIntegratedBC >>>> &integrated_bc_map)
	Apply boundary LinearFormIntegrators from integrated boundary conditions to the linear form associated with the supplied test variable. More...
void	ApplyBoundaryNLFIntegrators (const std::string &test_var_name, std::shared_ptr< mfem::ParNonlinearForm > form, NamedFieldsMap< NamedFieldsMap< std::vector< std::shared_ptr< MFEMIntegratedBC >>>> &integrated_bc_map, std::optional< mfem::real_t > scale_factor=std::nullopt)
	Apply boundary NonlinearFormIntegrators from integrated boundary conditions to the nonlinear form associated with the supplied test variable. More...

Protected Attributes
NamedFieldsMap< mfem::ParSesquilinearForm >	_slfs
NamedFieldsMap< mfem::ParComplexLinearForm >	_clfs
NamedFieldsMap< NamedFieldsMap< std::vector< std::shared_ptr< MFEMComplexKernel > > > >	_cmplx_kernels_map
NamedFieldsMap< NamedFieldsMap< std::vector< std::shared_ptr< MFEMComplexIntegratedBC > > > >	_cmplx_integrated_bc_map
NamedFieldsMap< std::vector< std::shared_ptr< MFEMComplexEssentialBC > > >	_cmplx_essential_bc_map
ComplexGridFunctions	_cmplx_eliminated_variables
	Pointers to coupled variables not part of the reduced EquationSystem. More...
std::vector< std::unique_ptr< mfem::ParComplexGridFunction > >	_cmplx_var_ess_constraints
	Complex Gridfunctions holding essential constraints from Dirichlet BCs. More...
Moose::MFEM::ComplexGridFunctions *	_complex_gfuncs
std::vector< std::string >	_coupled_var_names
	Names of all trial variables of kernels and boundary conditions added to this EquationSystem. More...
std::vector< std::string >	_trial_var_names
	Subset of _coupled_var_names of all variables corresponding to gridfunctions with degrees of freedom that comprise the state vector of this EquationSystem. More...
std::vector< std::string >	_eliminated_var_names
	Names of all coupled variables without a corresponding test variable. More...
Moose::MFEM::GridFunctions	_eliminated_variables
	Pointers to coupled variables not part of the reduced EquationSystem. More...
std::vector< std::string >	_test_var_names
	Names of all test variables corresponding to linear forms in this equation system. More...
std::vector< mfem::ParFiniteElementSpace * >	_test_pfespaces
	Pointers to finite element spaces associated with test variables. More...
std::vector< mfem::ParFiniteElementSpace * >	_coupled_pfespaces
	Pointers to finite element spaces associated with coupled variables. More...
NamedFieldsMap< mfem::ParBilinearForm >	_blfs
NamedFieldsMap< mfem::ParLinearForm >	_lfs
NamedFieldsMap< mfem::ParNonlinearForm >	_nlfs
NamedFieldsMap< NamedFieldsMap< mfem::ParMixedBilinearForm > >	_mblfs
std::vector< std::unique_ptr< mfem::ParGridFunction > >	_var_ess_constraints
	Gridfunctions holding essential constraints from Dirichlet BCs. More...
std::vector< mfem::Array< int > >	_ess_tdof_lists
mfem::Array2D< const mfem::HypreParMatrix * >	_h_blocks
mfem::Array2D< const mfem::HypreParMatrix * >	_jacobian_blocks
NamedFieldsMap< NamedFieldsMap< std::vector< std::shared_ptr< MFEMKernel > > > >	_kernels_map
	Arrays to store kernels to act on each component of weak form. More...
NamedFieldsMap< NamedFieldsMap< std::vector< std::shared_ptr< MFEMIntegratedBC > > > >	_integrated_bc_map
	Arrays to store integrated BCs to act on each component of weak form. More...
NamedFieldsMap< std::vector< std::shared_ptr< MFEMEssentialBC > > >	_essential_bc_map
	Arrays to store essential BCs to act on each component of weak form. More...
mfem::OperatorHandle	_jacobian
mfem::OperatorHandle	_linear_operator
mfem::AssemblyLevel	_assembly_level
Moose::MFEM::GridFunctions *	_gfuncs
mfem::Array< int >	_block_true_offsets
bool	_non_linear = false
bool	_solver_requires_gradient = false

Detailed Description

Definition at line 19 of file ComplexEquationSystem.h.

Constructor & Destructor Documentation

ComplexEquationSystem()

Moose::MFEM::ComplexEquationSystem::ComplexEquationSystem ( )

default

~ComplexEquationSystem()

Moose::MFEM::ComplexEquationSystem::~ComplexEquationSystem ( )

default

Member Function Documentation

AddComplexEssentialBCs()

void Moose::MFEM::ComplexEquationSystem::AddComplexEssentialBCs

(

std::shared_ptr< MFEMComplexEssentialBC >

bc

)

Add complex essential BCs.

Definition at line 197 of file ComplexEquationSystem.C.

Referenced by MFEMProblem::addBoundaryCondition().

{
  const auto & test_var_name = bc->getTestVariableName();
  AddTestVariableNameIfMissing(test_var_name);
  // Register new complex essential bc map if not present for the test variable
  if (!_cmplx_essential_bc_map.Has(test_var_name))
  {
    auto bcs = std::make_shared<std::vector<std::shared_ptr<MFEMComplexEssentialBC>>>();
    _cmplx_essential_bc_map.Register(test_var_name, std::move(bcs));
  }
  _cmplx_essential_bc_map.GetRef(test_var_name).push_back(std::move(bc));
}

AddComplexIntegratedBC()

void Moose::MFEM::ComplexEquationSystem::AddComplexIntegratedBC

(

std::shared_ptr< MFEMComplexIntegratedBC >

bc

)

Add complex integrated BCs.

Definition at line 174 of file ComplexEquationSystem.C.

Referenced by MFEMProblem::addBoundaryCondition().

{
  const auto & trial_var_name = bc->getTrialVariableName();
  const auto & test_var_name = bc->getTestVariableName();
  AddCoupledVariableNameIfMissing(trial_var_name);
  AddTestVariableNameIfMissing(test_var_name);
  // Register new complex integrated bc map if not present for the test variable
  if (!_cmplx_integrated_bc_map.Has(test_var_name))
  {
    auto integrated_bc_field_map =
        std::make_shared<NamedFieldsMap<std::vector<std::shared_ptr<MFEMComplexIntegratedBC>>>>();
    _cmplx_integrated_bc_map.Register(test_var_name, std::move(integrated_bc_field_map));
  }
  // Register new complex integrated bc map if not present for the test/trial variable pair
  if (!_cmplx_integrated_bc_map.Get(test_var_name)->Has(trial_var_name))
  {
    auto bcs = std::make_shared<std::vector<std::shared_ptr<MFEMComplexIntegratedBC>>>();
    _cmplx_integrated_bc_map.Get(test_var_name)->Register(trial_var_name, std::move(bcs));
  }
  _cmplx_integrated_bc_map.GetRef(test_var_name).Get(trial_var_name)->push_back(std::move(bc));
}

AddComplexKernel()

void Moose::MFEM::ComplexEquationSystem::AddComplexKernel

(

std::shared_ptr< MFEMComplexKernel >

kernel

)

Add complex kernels.

Definition at line 151 of file ComplexEquationSystem.C.

Referenced by MFEMProblem::addKernel().

{
  const auto & trial_var_name = kernel->getTrialVariableName();
  const auto & test_var_name = kernel->getTestVariableName();
  AddCoupledVariableNameIfMissing(trial_var_name);
  AddTestVariableNameIfMissing(test_var_name);
  // Register new complex kernels map if not present for the test variable
  if (!_cmplx_kernels_map.Has(test_var_name))
  {
    auto kernel_field_map =
        std::make_shared<NamedFieldsMap<std::vector<std::shared_ptr<MFEMComplexKernel>>>>();
    _cmplx_kernels_map.Register(test_var_name, std::move(kernel_field_map));
  }
  // Register new complex kernels map if not present for the test/trial variable pair
  if (!_cmplx_kernels_map.Get(test_var_name)->Has(trial_var_name))
  {
    auto kernels = std::make_shared<std::vector<std::shared_ptr<MFEMComplexKernel>>>();
    _cmplx_kernels_map.Get(test_var_name)->Register(trial_var_name, std::move(kernels));
  }
  _cmplx_kernels_map.GetRef(test_var_name).Get(trial_var_name)->push_back(std::move(kernel));
}

AddCoupledVariableNameIfMissing()

void Moose::MFEM::EquationSystem::AddCoupledVariableNameIfMissing ( const std::string &  coupled_var_name )

protectedvirtualinherited

Add coupled variable to EquationSystem.

Definition at line 56 of file EquationSystem.C.

Referenced by AddComplexIntegratedBC(), AddComplexKernel(), Moose::MFEM::EquationSystem::AddIntegratedBC(), and Moose::MFEM::EquationSystem::AddKernel().

{
  if (!VectorContainsName(_coupled_var_names, coupled_var_name))
    _coupled_var_names.push_back(coupled_var_name);
}

AddEliminatedVariableNameIfMissing()

void Moose::MFEM::EquationSystem::AddEliminatedVariableNameIfMissing ( const std::string &  eliminated_var_name )

protectedvirtualinherited

Add eliminated variable to EquationSystem.

Definition at line 63 of file EquationSystem.C.

Referenced by Moose::MFEM::TimeDependentEquationSystem::AddKernel().

{
  if (!VectorContainsName(_eliminated_var_names, eliminated_var_name))
    _eliminated_var_names.push_back(eliminated_var_name);
}

AddEssentialBC()

void Moose::MFEM::EquationSystem::AddEssentialBC ( std::shared_ptr< MFEMEssentialBC >  bc )

virtualinherited

Add BC associated with essentially constrained DoFs on boundaries.

Definition at line 138 of file EquationSystem.C.

Referenced by MFEMProblem::addBoundaryCondition().

{
  const auto & test_var_name = bc->getTestVariableName();
  AddTestVariableNameIfMissing(test_var_name);
  // Register new essential bc map if not present for the test variable
  if (!_essential_bc_map.Has(test_var_name))
  {
    auto bcs = std::make_shared<std::vector<std::shared_ptr<MFEMEssentialBC>>>();
    _essential_bc_map.Register(test_var_name, std::move(bcs));
  }
  _essential_bc_map.GetRef(test_var_name).push_back(std::move(bc));
}

AddIntegratedBC()

void Moose::MFEM::EquationSystem::AddIntegratedBC ( std::shared_ptr< MFEMIntegratedBC >  kernel )

virtualinherited

Definition at line 115 of file EquationSystem.C.

Referenced by MFEMProblem::addBoundaryCondition().

{
  const auto & trial_var_name = bc->getTrialVariableName();
  const auto & test_var_name = bc->getTestVariableName();
  AddCoupledVariableNameIfMissing(trial_var_name);
  AddTestVariableNameIfMissing(test_var_name);
  // Register new integrated bc map if not present for the test variable
  if (!_integrated_bc_map.Has(test_var_name))
  {
    auto integrated_bc_field_map = std::make_shared<
        Moose::MFEM::NamedFieldsMap<std::vector<std::shared_ptr<MFEMIntegratedBC>>>>();
    _integrated_bc_map.Register(test_var_name, std::move(integrated_bc_field_map));
  }
  // Register new integrated bc map if not present for the test/trial variable pair
  if (!_integrated_bc_map.Get(test_var_name)->Has(trial_var_name))
  {
    auto bcs = std::make_shared<std::vector<std::shared_ptr<MFEMIntegratedBC>>>();
    _integrated_bc_map.Get(test_var_name)->Register(trial_var_name, std::move(bcs));
  }
  _integrated_bc_map.GetRef(test_var_name).Get(trial_var_name)->push_back(std::move(bc));
}

AddKernel()

void Moose::MFEM::EquationSystem::AddKernel ( std::shared_ptr< MFEMKernel >  kernel )

virtualinherited

Add kernels.

Reimplemented in Moose::MFEM::TimeDependentEquationSystem.

Definition at line 92 of file EquationSystem.C.

Referenced by Moose::MFEM::TimeDependentEquationSystem::AddKernel(), and MFEMProblem::addKernel().

{
  const auto & trial_var_name = kernel->getTrialVariableName();
  const auto & test_var_name = kernel->getTestVariableName();
  AddCoupledVariableNameIfMissing(trial_var_name);
  AddTestVariableNameIfMissing(test_var_name);
  // Register new kernels map if not present for the test variable
  if (!_kernels_map.Has(test_var_name))
  {
    auto kernel_field_map =
        std::make_shared<Moose::MFEM::NamedFieldsMap<std::vector<std::shared_ptr<MFEMKernel>>>>();
    _kernels_map.Register(test_var_name, std::move(kernel_field_map));
  }
  // Register new kernels map if not present for the test/trial variable pair
  if (!_kernels_map.Get(test_var_name)->Has(trial_var_name))
  {
    auto kernels = std::make_shared<std::vector<std::shared_ptr<MFEMKernel>>>();
    _kernels_map.Get(test_var_name)->Register(trial_var_name, std::move(kernels));
  }
  _kernels_map.GetRef(test_var_name).Get(trial_var_name)->push_back(std::move(kernel));
}

AddTestVariableNameIfMissing()

void Moose::MFEM::EquationSystem::AddTestVariableNameIfMissing ( const std::string &  test_var_name )

protectedvirtualinherited

Add test variable to EquationSystem.

Definition at line 70 of file EquationSystem.C.

Referenced by AddComplexEssentialBCs(), AddComplexIntegratedBC(), AddComplexKernel(), Moose::MFEM::EquationSystem::AddEssentialBC(), Moose::MFEM::EquationSystem::AddIntegratedBC(), Moose::MFEM::TimeDependentEquationSystem::AddKernel(), and Moose::MFEM::EquationSystem::AddKernel().

{
  if (!VectorContainsName(_test_var_names, test_var_name))
    _test_var_names.push_back(test_var_name);
}

ApplyBoundaryBLFIntegrators() [1/2]

template<class FormType >

void Moose::MFEM::ComplexEquationSystem::ApplyBoundaryBLFIntegrators	(	const std::string &	trial_var_name,
		const std::string &	test_var_name,
		std::shared_ptr< FormType >	form,
		NamedFieldsMap< NamedFieldsMap< std::vector< std::shared_ptr< MFEMComplexIntegratedBC >>>> &	integrated_bc_map
	)

Template method for applying BilinearFormIntegrators on boudaries from kernels to a SesquilinearForm.

Definition at line 187 of file ComplexEquationSystem.h.

{
  if (integrated_bc_map.Has(test_var_name) &&
      integrated_bc_map.Get(test_var_name)->Has(trial_var_name))
  {
    auto bcs = integrated_bc_map.GetRef(test_var_name).GetRef(trial_var_name);
    for (auto & bc : bcs)
    {
      mfem::BilinearFormIntegrator * integ_real = bc->getRealBFIntegrator();
      mfem::BilinearFormIntegrator * integ_imag = bc->getImagBFIntegrator();

      if (integ_real || integ_imag)
      {
        bc->isBoundaryRestricted()
            ? form->AddBoundaryIntegrator(
                  std::move(integ_real), std::move(integ_imag), bc->getBoundaryMarkers())
            : form->AddBoundaryIntegrator(std::move(integ_real), std::move(integ_imag));
      }
    }
  }
}

ApplyBoundaryBLFIntegrators() [2/2]

template<class FormType >

void Moose::MFEM::EquationSystem::ApplyBoundaryBLFIntegrators ( const std::string &  trial_var_name, const std::string &  test_var_name, std::shared_ptr< FormType >  form, NamedFieldsMap< NamedFieldsMap< std::vector< std::shared_ptr< MFEMIntegratedBC >>>> &  integrated_bc_map, std::optional< mfem::real_t >  scale_factor = std::nullopt  )

protectedinherited

Template method for applying BilinearFormIntegrators on boundaries from integrated boundary conditions to a BilinearForm, or MixedBilinearForm.

Definition at line 311 of file EquationSystem.h.

{
  if (integrated_bc_map.Has(test_var_name) &&
      integrated_bc_map.Get(test_var_name)->Has(trial_var_name))
  {
    auto bcs = integrated_bc_map.GetRef(test_var_name).GetRef(trial_var_name);
    for (auto & bc : bcs)
    {
      mfem::BilinearFormIntegrator * integ = bc->createBFIntegrator();

      if (integ)
      {
        if (scale_factor.has_value())
          integ = new ScaleIntegrator(integ, scale_factor.value(), true);
        bc->isBoundaryRestricted()
            ? form->AddBoundaryIntegrator(std::move(integ), bc->getBoundaryMarkers())
            : form->AddBoundaryIntegrator(std::move(integ));
      }
    }
  }
}

ApplyBoundaryLFIntegrators() [1/2]

void Moose::MFEM::ComplexEquationSystem::ApplyBoundaryLFIntegrators ( const std::string &  test_var_name, std::shared_ptr< mfem::ParComplexLinearForm >  form, NamedFieldsMap< NamedFieldsMap< std::vector< std::shared_ptr< MFEMComplexIntegratedBC >>>> &  integrated_bc_map  )

inline

Method for applying LinearFormIntegrators on boundaries from kernels to a ParComplexLinearForm.

Definition at line 215 of file ComplexEquationSystem.h.

Referenced by BuildLinearForms().

{
  if (integrated_bc_map.Has(test_var_name))
  {
    auto bcs = integrated_bc_map.GetRef(test_var_name).GetRef(test_var_name);
    for (auto & bc : bcs)
    {
      mfem::LinearFormIntegrator * integ_real = bc->getRealLFIntegrator();
      mfem::LinearFormIntegrator * integ_imag = bc->getImagLFIntegrator();

      if (integ_real || integ_imag)
      {
        bc->isBoundaryRestricted()
            ? form->AddBoundaryIntegrator(
                  std::move(integ_real), std::move(integ_imag), bc->getBoundaryMarkers())
            : form->AddBoundaryIntegrator(std::move(integ_real), std::move(integ_imag));
      }
    }
  }
}

ApplyBoundaryLFIntegrators() [2/2]

void Moose::MFEM::EquationSystem::ApplyBoundaryLFIntegrators ( const std::string &  test_var_name, std::shared_ptr< mfem::ParLinearForm >  form, NamedFieldsMap< NamedFieldsMap< std::vector< std::shared_ptr< MFEMIntegratedBC >>>> &  integrated_bc_map  )

protectedinherited

Apply boundary LinearFormIntegrators from integrated boundary conditions to the linear form associated with the supplied test variable.

Definition at line 650 of file EquationSystem.C.

Referenced by Moose::MFEM::EquationSystem::BuildLinearForms().

{
  if (integrated_bc_map.Has(test_var_name) &&
      integrated_bc_map.Get(test_var_name)->Has(test_var_name))
  {
    auto bcs = integrated_bc_map.GetRef(test_var_name).GetRef(test_var_name);
    for (auto & bc : bcs)
    {
      mfem::LinearFormIntegrator * integ = bc->createLFIntegrator();

      if (integ)
      {
        bc->isBoundaryRestricted()
            ? form->AddBoundaryIntegrator(std::move(integ), bc->getBoundaryMarkers())
            : form->AddBoundaryIntegrator(std::move(integ));
      }
    }
  }
}

ApplyBoundaryNLFIntegrators()

void Moose::MFEM::EquationSystem::ApplyBoundaryNLFIntegrators ( const std::string &  test_var_name, std::shared_ptr< mfem::ParNonlinearForm >  form, NamedFieldsMap< NamedFieldsMap< std::vector< std::shared_ptr< MFEMIntegratedBC >>>> &  integrated_bc_map, std::optional< mfem::real_t >  scale_factor = std::nullopt  )

protectedinherited

Apply boundary NonlinearFormIntegrators from integrated boundary conditions to the nonlinear form associated with the supplied test variable.

Definition at line 675 of file EquationSystem.C.

Referenced by Moose::MFEM::TimeDependentEquationSystem::BuildNonlinearForms(), and Moose::MFEM::EquationSystem::BuildNonlinearForms().

{
  if (integrated_bc_map.Has(test_var_name))
    for (const auto & [trial_var_name, bcs] : integrated_bc_map.GetRef(test_var_name))
      for (auto & bc : *bcs)
        if (auto * integ = bc->createNLIntegrator())
        {
          if (_solver_requires_gradient && (test_var_name != trial_var_name))
            mooseError(
                "Support for Off-diagonal MFEM nonlinear boundary integrators in conjunction with "
                "a nonlinear solver that requires a gradient is not currently "
                "implemented. Boundary condition '",
                bc->name(),
                "' contributes to test variable '",
                test_var_name,
                "' from trial variable '",
                trial_var_name,
                "'.");

          _non_linear = true;
          if (scale_factor.has_value())
            integ = new NLScaleIntegrator(integ, scale_factor.value(), true);
          bc->isBoundaryRestricted()
              ? form->AddBoundaryIntegrator(std::move(integ), bc->getBoundaryMarkers())
              : form->AddBoundaryIntegrator(std::move(integ));
        }
}

ApplyComplexEssentialBC()

void Moose::MFEM::ComplexEquationSystem::ApplyComplexEssentialBC ( const std::string &  var_name, mfem::ParComplexGridFunction &  trial_gf, mfem::Array< int > &  global_ess_markers  )

virtual

Apply essential BC(s) associated with var_name to set true DoFs of trial_gf and update markers of all essential boundaries.

Definition at line 106 of file ComplexEquationSystem.C.

Referenced by ApplyEssentialBCs().

{
  if (_cmplx_essential_bc_map.Has(var_name))
  {
    auto & bcs = _cmplx_essential_bc_map.GetRef(var_name);
    for (auto & bc : bcs)
    {
      // Set constrained DoFs values on essential boundaries
      bc->ApplyBC(trial_gf);
      // Fetch marker array labelling essential boundaries of current BC
      mfem::Array<int> ess_bdrs(bc->getBoundaryMarkers());
      // Add these boundary markers to the set of markers labelling all essential boundaries
      for (const auto i : make_range(trial_gf.ParFESpace()->GetParMesh()->bdr_attributes.Max()))
        global_ess_markers[i] = std::max(global_ess_markers[i], ess_bdrs[i]);
    }
  }
}

ApplyDomainBLFIntegrators() [1/2]

template<class FormType >

void Moose::MFEM::ComplexEquationSystem::ApplyDomainBLFIntegrators	(	const std::string &	trial_var_name,
		const std::string &	test_var_name,
		std::shared_ptr< FormType >	form,
		NamedFieldsMap< NamedFieldsMap< std::vector< std::shared_ptr< MFEMComplexKernel >>>> &	kernels_map
	)

Template method for applying BilinearFormIntegrators on domains from kernels to a SesquilinearForm.

Definition at line 135 of file ComplexEquationSystem.h.

{
  if (kernels_map.Has(test_var_name) && kernels_map.Get(test_var_name)->Has(trial_var_name))
  {
    auto kernels = kernels_map.GetRef(test_var_name).GetRef(trial_var_name);
    for (auto & kernel : kernels)
    {
      mfem::BilinearFormIntegrator * integ_real = kernel->getRealBFIntegrator();
      mfem::BilinearFormIntegrator * integ_imag = kernel->getImagBFIntegrator();

      if (integ_real || integ_imag)
      {
        kernel->isSubdomainRestricted()
            ? form->AddDomainIntegrator(
                  std::move(integ_real), std::move(integ_imag), kernel->getSubdomainMarkers())
            : form->AddDomainIntegrator(std::move(integ_real), std::move(integ_imag));
      }
    }
  }
}

ApplyDomainBLFIntegrators() [2/2]

template<class FormType >

void Moose::MFEM::EquationSystem::ApplyDomainBLFIntegrators ( const std::string &  trial_var_name, const std::string &  test_var_name, std::shared_ptr< FormType >  form, NamedFieldsMap< NamedFieldsMap< std::vector< std::shared_ptr< MFEMKernel >>>> &  kernels_map, std::optional< mfem::real_t >  scale_factor = std::nullopt  )

protectedinherited

Template method for applying BilinearFormIntegrators on domains from kernels to a BilinearForm, or MixedBilinearForm.

Definition at line 283 of file EquationSystem.h.

{
  if (kernels_map.Has(test_var_name) && kernels_map.Get(test_var_name)->Has(trial_var_name))
  {
    auto kernels = kernels_map.GetRef(test_var_name).GetRef(trial_var_name);
    for (auto & kernel : kernels)
    {
      mfem::BilinearFormIntegrator * integ = kernel->createBFIntegrator();

      if (integ)
      {
        if (scale_factor.has_value())
          integ = new ScaleIntegrator(integ, scale_factor.value(), true);
        kernel->isSubdomainRestricted()
            ? form->AddDomainIntegrator(std::move(integ), kernel->getSubdomainMarkers())
            : form->AddDomainIntegrator(std::move(integ));
      }
    }
  }
}

ApplyDomainLFIntegrators() [1/2]

void Moose::MFEM::ComplexEquationSystem::ApplyDomainLFIntegrators ( const std::string &  test_var_name, std::shared_ptr< mfem::ParComplexLinearForm >  form, NamedFieldsMap< NamedFieldsMap< std::vector< std::shared_ptr< MFEMComplexKernel >>>> &  kernels_map  )

inline

Method for applying LinearFormIntegrators on domains from kernels to a ParComplexLinearForm.

Definition at line 161 of file ComplexEquationSystem.h.

Referenced by BuildLinearForms().

{
  if (kernels_map.Has(test_var_name))
  {
    auto kernels = kernels_map.GetRef(test_var_name).GetRef(test_var_name);
    for (auto & kernel : kernels)
    {
      mfem::LinearFormIntegrator * integ_real = kernel->getRealLFIntegrator();
      mfem::LinearFormIntegrator * integ_imag = kernel->getImagLFIntegrator();

      if (integ_real || integ_imag)
      {
        kernel->isSubdomainRestricted()
            ? form->AddDomainIntegrator(
                  std::move(integ_real), std::move(integ_imag), kernel->getSubdomainMarkers())
            : form->AddDomainIntegrator(std::move(integ_real), std::move(integ_imag));
      }
    }
  }
}

ApplyDomainLFIntegrators() [2/2]

void Moose::MFEM::EquationSystem::ApplyDomainLFIntegrators ( const std::string &  test_var_name, std::shared_ptr< mfem::ParLinearForm >  form, NamedFieldsMap< NamedFieldsMap< std::vector< std::shared_ptr< MFEMKernel >>>> &  kernels_map  )

protectedinherited

Apply domain LinearFormIntegrators from kernels to the linear form associated with the supplied test variable.

Definition at line 595 of file EquationSystem.C.

Referenced by Moose::MFEM::EquationSystem::BuildLinearForms().

{
  if (kernels_map.Has(test_var_name) && kernels_map.Get(test_var_name)->Has(test_var_name))
  {
    auto kernels = kernels_map.GetRef(test_var_name).GetRef(test_var_name);
    for (auto & kernel : kernels)
    {
      mfem::LinearFormIntegrator * integ = kernel->createLFIntegrator();

      if (integ)
      {
        kernel->isSubdomainRestricted()
            ? form->AddDomainIntegrator(std::move(integ), kernel->getSubdomainMarkers())
            : form->AddDomainIntegrator(std::move(integ));
      }
    }
  }
}

ApplyDomainNLFIntegrators()

void Moose::MFEM::EquationSystem::ApplyDomainNLFIntegrators ( const std::string &  test_var_name, std::shared_ptr< mfem::ParNonlinearForm >  form, NamedFieldsMap< NamedFieldsMap< std::vector< std::shared_ptr< MFEMKernel >>>> &  kernels_map, std::optional< mfem::real_t >  scale_factor = std::nullopt  )

protectedinherited

Apply domain NonlinearFormIntegrators from kernels to the nonlinear form associated with the supplied test variable.

Definition at line 618 of file EquationSystem.C.

Referenced by Moose::MFEM::TimeDependentEquationSystem::BuildNonlinearForms(), and Moose::MFEM::EquationSystem::BuildNonlinearForms().

{
  if (kernels_map.Has(test_var_name))
    for (const auto & [trial_var_name, kernels] : kernels_map.GetRef(test_var_name))
      for (auto & kernel : *kernels)
        if (auto * integ = kernel->createNLIntegrator())
        {
          if (_solver_requires_gradient && (trial_var_name != test_var_name))
            mooseError("Support for off-diagonal MFEM nonlinear domain integrators in conjunction "
                       "with a nonlinear solver that requires a gradient is not currently "
                       "implemented. Kernel '",
                       kernel->name(),
                       "' contributes to test variable '",
                       test_var_name,
                       "' from trial variable '",
                       trial_var_name,
                       "'.");

          _non_linear = true;
          if (scale_factor.has_value())
            integ = new NLScaleIntegrator(integ, scale_factor.value(), true);
          kernel->isSubdomainRestricted()
              ? form->AddDomainIntegrator(std::move(integ), kernel->getSubdomainMarkers())
              : form->AddDomainIntegrator(std::move(integ));
        }
}

ApplyEssentialBC()

void Moose::MFEM::EquationSystem::ApplyEssentialBC ( const std::string &  var_name, mfem::ParGridFunction &  trial_gf, mfem::Array< int > &  global_ess_markers  )

protectedvirtualinherited

Apply essential BC(s) associated with var_name to set true DoFs of trial_gf and update markers of all essential boundaries.

Definition at line 207 of file EquationSystem.C.

Referenced by Moose::MFEM::EquationSystem::ApplyEssentialBCs().

{
  if (_essential_bc_map.Has(var_name))
  {
    auto & bcs = _essential_bc_map.GetRef(var_name);
    for (auto & bc : bcs)
    {
      // Set constrained DoFs values on essential boundaries
      bc->ApplyBC(trial_gf);
      // Fetch marker array labelling essential boundaries of current BC
      mfem::Array<int> ess_bdrs(bc->getBoundaryMarkers());
      // Add these boundary markers to the set of markers labelling all essential boundaries
      for (const auto i : make_range(trial_gf.ParFESpace()->GetParMesh()->bdr_attributes.Max()))
        global_ess_markers[i] = std::max(global_ess_markers[i], ess_bdrs[i]);
    }
  }
}

ApplyEssentialBCs()

void Moose::MFEM::ComplexEquationSystem::ApplyEssentialBCs ( )

overridevirtual

Update all essentially constrained true DoF markers and values on boundaries.

Reimplemented from Moose::MFEM::EquationSystem.

Definition at line 127 of file ComplexEquationSystem.C.

Referenced by BuildLinearForms().

{
  _ess_tdof_lists.resize(_trial_var_names.size());
  for (const auto i : index_range(_trial_var_names))
  {
    const auto & trial_var_name = _trial_var_names.at(i);
    mfem::ParComplexGridFunction & trial_gf = *_cmplx_var_ess_constraints.at(i);

    // Make sure we update the size, if this mesh has changed recently for instance
    trial_gf.Update();

    // Initial guess for iterative solvers (initial condition or the previous time step solution)
    static_cast<mfem::Vector &>(trial_gf) = _complex_gfuncs->GetRef(trial_var_name);

    mfem::Array<int> global_ess_markers(trial_gf.ParFESpace()->GetParMesh()->bdr_attributes.Max());
    global_ess_markers = 0;
    // Set strongly constrained DoFs of trial_gf on essential boundaries and add markers for all
    // essential boundaries to the global_ess_markers array
    ApplyComplexEssentialBC(trial_var_name, trial_gf, global_ess_markers);
    trial_gf.FESpace()->GetEssentialTrueDofs(global_ess_markers, _ess_tdof_lists.at(i));
  }
}

BuildBilinearForms()

void Moose::MFEM::ComplexEquationSystem::BuildBilinearForms ( )

overridevirtual

Build bilinear forms (diagonal Jacobian contributions)

Reimplemented from Moose::MFEM::EquationSystem.

Definition at line 84 of file ComplexEquationSystem.C.

Referenced by BuildEquationSystem().

{
  // Register bilinear forms
  for (const auto i : index_range(_test_var_names))
  {
    auto test_var_name = _test_var_names.at(i);
    _slfs.Register(test_var_name,
                   std::make_shared<mfem::ParSesquilinearForm>(_test_pfespaces.at(i)));

    // Apply kernels
    auto slf = _slfs.GetShared(test_var_name);
    slf->SetAssemblyLevel(_assembly_level);
    ApplyBoundaryBLFIntegrators<mfem::ParSesquilinearForm>(
        test_var_name, test_var_name, slf, _cmplx_integrated_bc_map);
    ApplyDomainBLFIntegrators<mfem::ParSesquilinearForm>(
        test_var_name, test_var_name, slf, _cmplx_kernels_map);
    // Assemble
    slf->Assemble();
  }
}

BuildEquationSystem()

void Moose::MFEM::ComplexEquationSystem::BuildEquationSystem ( )

overridevirtual

Build all forms comprising this EquationSystem.

Reimplemented from Moose::MFEM::EquationSystem.

Definition at line 53 of file ComplexEquationSystem.C.

{
  BuildBilinearForms();
  BuildLinearForms();
}

BuildLinearForms()

void Moose::MFEM::ComplexEquationSystem::BuildLinearForms ( )

overridevirtual

Build linear forms and eliminate constrained DoFs.

Reimplemented from Moose::MFEM::EquationSystem.

Definition at line 60 of file ComplexEquationSystem.C.

Referenced by BuildEquationSystem().

{
  // Register linear forms
  for (const auto i : index_range(_test_var_names))
  {
    auto test_var_name = _test_var_names.at(i);
    _clfs.Register(test_var_name,
                   std::make_shared<mfem::ParComplexLinearForm>(_test_pfespaces.at(i)));
    _clfs.GetRef(test_var_name) = 0.0;
  }
  // Apply boundary conditions
  ApplyEssentialBCs();

  for (auto & test_var_name : _test_var_names)
  {
    // Apply kernels
    auto clf = _clfs.GetShared(test_var_name);
    ApplyDomainLFIntegrators(test_var_name, clf, _cmplx_kernels_map);
    ApplyBoundaryLFIntegrators(test_var_name, clf, _cmplx_integrated_bc_map);
    clf->Assemble();
  }
}

BuildMixedBilinearForms()

void Moose::MFEM::EquationSystem::BuildMixedBilinearForms ( )

protectedvirtualinherited

Build mixed bilinear forms (off-diagonal Jacobian contributions)

Reimplemented in Moose::MFEM::TimeDependentEquationSystem.

Definition at line 547 of file EquationSystem.C.

Referenced by Moose::MFEM::EquationSystem::BuildEquationSystem().

{
  // Register mixed bilinear forms. Note that not all combinations may
  // have a kernel.

  // Create mblf for each test/coupled variable pair with an added kernel.
  // Mixed bilinear forms with coupled variables that are not trial variables are
  // associated with contributions from eliminated variables.
  for (const auto i : index_range(_test_var_names))
  {
    auto test_var_name = _test_var_names.at(i);
    auto test_mblfs = std::make_shared<Moose::MFEM::NamedFieldsMap<mfem::ParMixedBilinearForm>>();
    for (const auto j : index_range(_coupled_var_names))
    {
      const auto & coupled_var_name = _coupled_var_names.at(j);
      auto mblf = std::make_shared<mfem::ParMixedBilinearForm>(_coupled_pfespaces.at(j),
                                                               _test_pfespaces.at(i));
      // Register MixedBilinearForm if kernels exist for it, and assemble kernels
      if (_kernels_map.Has(test_var_name) &&
          _kernels_map.Get(test_var_name)->Has(coupled_var_name) &&
          test_var_name != coupled_var_name)
      {
        mblf->SetAssemblyLevel(_assembly_level);
        // Apply all mixed kernels with this test/trial pair
        ApplyDomainBLFIntegrators<mfem::ParMixedBilinearForm>(
            coupled_var_name, test_var_name, mblf, _kernels_map);
        // Assemble mixed bilinear forms
        mblf->Assemble();
        // Register mixed bilinear forms associated with a single trial variable
        // for the current test variable
        test_mblfs->Register(coupled_var_name, mblf);
      }
    }
    // Register all mixed bilinear form sets associated with a single test variable
    _mblfs.Register(test_var_name, test_mblfs);
  }
}

BuildNonlinearForms()

void Moose::MFEM::EquationSystem::BuildNonlinearForms ( )

protectedvirtualinherited

Build non-linear action forms.

Reimplemented in Moose::MFEM::TimeDependentEquationSystem.

Definition at line 510 of file EquationSystem.C.

Referenced by Moose::MFEM::EquationSystem::BuildEquationSystem().

{
  // Register non-linear Action forms
  for (const auto i : index_range(_test_var_names))
  {
    auto test_var_name = _test_var_names.at(i);
    _nlfs.Register(test_var_name, std::make_shared<mfem::ParNonlinearForm>(_test_pfespaces.at(i)));
    // Apply kernels
    auto nlf = _nlfs.GetShared(test_var_name);
    nlf->SetEssentialTrueDofs(_ess_tdof_lists.at(i));
    ApplyDomainNLFIntegrators(test_var_name, nlf, _kernels_map, std::nullopt);
    ApplyBoundaryNLFIntegrators(test_var_name, nlf, _integrated_bc_map, std::nullopt);
  }
}

Complex()

virtual bool Moose::MFEM::ComplexEquationSystem::Complex ( ) const

inlineoverridevirtual

Whether this a complex equation system.

Reimplemented from Moose::MFEM::EquationSystem.

Definition at line 107 of file ComplexEquationSystem.h.

{ return true; }

ComputeNonlinearResidual()

void Moose::MFEM::EquationSystem::ComputeNonlinearResidual ( const mfem::Vector &  u, mfem::Vector &  residual  ) const

virtualinherited

Compute the contribution to the residual from nonlinear forms only.

Definition at line 406 of file EquationSystem.C.

Referenced by Moose::MFEM::EquationSystem::Mult().

{
  mooseAssert(_non_linear, "Should not be calling this method if our forms are not nonlinear");
  residual = 0.0;

  const mfem::BlockVector block_solution(const_cast<mfem::Vector &>(sol), _block_true_offsets);
  SetTrialVariablesFromTrueVectors(block_solution);

  mfem::BlockVector block_residual(residual, _block_true_offsets);
  for (unsigned int i = 0; i < _test_var_names.size(); i++)
  {
    auto & test_var_name = _test_var_names.at(i);
    auto nlf = _nlfs.GetShared(test_var_name);
    nlf->Mult(block_solution.GetBlock(i), block_residual.GetBlock(i));
    block_residual.GetBlock(i).SyncAliasMemory(block_residual);
  }
}

DeleteHBlocks()

void Moose::MFEM::EquationSystem::DeleteHBlocks ( )

protectedinherited

Deletes the HypreParMatrix associated with any pointer stored in _h_blocks, and then proceeds to delete all dynamically allocated memory for _h_blocks itself, resetting all dimensions to zero.

Definition at line 26 of file EquationSystem.C.

Referenced by FormSystemMatrix(), Moose::MFEM::EquationSystem::FormSystemMatrix(), and Moose::MFEM::EquationSystem::~EquationSystem().

{
  for (const auto i : make_range(_h_blocks.NumRows()))
    for (const auto j : make_range(_h_blocks.NumCols()))
    {
      if (_jacobian_blocks.NumRows() && _jacobian_blocks(i, j) == _h_blocks(i, j))
        _jacobian_blocks(i, j) = nullptr;
      delete _h_blocks(i, j);
    }
  _h_blocks.DeleteAll();
}

DeleteJacobianBlocks()

void Moose::MFEM::EquationSystem::DeleteJacobianBlocks ( )

protectedinherited

Deletes the HypreParMatrix associated with any pointer stored in _jacobian_blocks, and then proceeds to delete all dynamically allocated memory for _jacobian_blocks itself, resetting all dimensions to zero.

Definition at line 39 of file EquationSystem.C.

Referenced by Moose::MFEM::EquationSystem::FormJacobianMatrix(), and Moose::MFEM::EquationSystem::~EquationSystem().

{
  for (const auto i : make_range(_jacobian_blocks.NumRows()))
    for (const auto j : make_range(_jacobian_blocks.NumCols()))
      if (!_h_blocks.NumRows() || _jacobian_blocks(i, j) != _h_blocks(i, j))
        delete _jacobian_blocks(i, j);
  _jacobian_blocks.DeleteAll();
}

EliminateCoupledVariables()

void Moose::MFEM::EquationSystem::EliminateCoupledVariables ( )

protectedvirtualinherited

Perform trivial eliminations of coupled variables lacking corresponding test variables.

Reimplemented in Moose::MFEM::TimeDependentEquationSystem.

Definition at line 252 of file EquationSystem.C.

Referenced by Moose::MFEM::EquationSystem::BuildLinearForms(), and Moose::MFEM::TimeDependentEquationSystem::EliminateCoupledVariables().

{
  for (const auto & test_var_name : _test_var_names)
    for (const auto & eliminated_var_name : _eliminated_var_names)
      if (_mblfs.Has(test_var_name) && _mblfs.Get(test_var_name)->Has(eliminated_var_name) &&
          !VectorContainsName(_test_var_names, eliminated_var_name))
      {
        auto & mblf = *_mblfs.Get(test_var_name)->Get(eliminated_var_name);
        mblf.AddMult(*_eliminated_variables.Get(eliminated_var_name), *_lfs.Get(test_var_name), -1);
      }
}

FormJacobianMatrix()

void Moose::MFEM::EquationSystem::FormJacobianMatrix ( const mfem::Vector &  u )

protectedinherited

Compute Jacobian matrix at the provided vector of true DoFs of trial variables.

Definition at line 425 of file EquationSystem.C.

Referenced by Moose::MFEM::EquationSystem::GetGradient().

{
  DeleteJacobianBlocks();
  _jacobian_blocks.SetSize(_test_var_names.size(), _trial_var_names.size());
  _jacobian_blocks = nullptr;

  const mfem::BlockVector update_vector(const_cast<mfem::Vector &>(u), _block_true_offsets);
  for (const auto i : index_range(_test_var_names))
  {
    auto test_var_name = _test_var_names.at(i);
    if (_nlfs.Has(test_var_name))
    {
      auto nlf = _nlfs.Get(test_var_name);
      mfem::HypreParMatrix * nlf_jac =
          dynamic_cast<mfem::HypreParMatrix *>(&nlf->GetGradient(update_vector.GetBlock(i)));
      mooseAssert(nlf_jac,
                  "Jacobian contribution of nonlinear form associated with " + test_var_name +
                      " is not castable into a HypreParMatrix");
      _jacobian_blocks(i, i) = mfem::ParAdd(_h_blocks(i, i), nlf_jac);
    }
    else
      _jacobian_blocks(i, i) = _h_blocks(i, i);
    for (const auto j : index_range(_trial_var_names))
      if (i != j) // nlf->GetGradient only contributes to on-diagonal blocks
        _jacobian_blocks(i, j) = _h_blocks(i, j);
  }
  // Create monolithic matrix
  _jacobian.Reset(mfem::HypreParMatrixFromBlocks(_jacobian_blocks));
}

FormLinearSystem()

void Moose::MFEM::EquationSystem::FormLinearSystem ( mfem::OperatorHandle &  op, mfem::BlockVector &  trueX, mfem::BlockVector &  trueRHS  )

protectedvirtualinherited

Form linear components of system based on on- and off-diagonal bilinear form contributions, populate solution and RHS vectors of true DoFs, and apply constraints.

Definition at line 265 of file EquationSystem.C.

Referenced by Moose::MFEM::EquationSystem::FormSystem().

{
  mooseAssert(_test_var_names.size() == _trial_var_names.size(),
              "Number of test and trial variables must be the same for block matrix assembly.");

  if (_assembly_level == mfem::AssemblyLevel::LEGACY)
    FormSystemMatrix(op, trueX, trueRHS);
  else
  {
    mooseAssert(_test_var_names.size() == 1 && _test_var_names.size() == _trial_var_names.size(),
                "Non-legacy assembly is only supported for single test and trial variable systems");
    FormSystemOperator(op, trueX, trueRHS);
  }
}

FormSystem()

void Moose::MFEM::EquationSystem::FormSystem ( mfem::BlockVector &  trueX, mfem::BlockVector &  trueRHS  )

inherited

Assemble the linear part of the operator, assemble the right-hand side, apply essential and eliminated-variable constraints, and populate the true-DoF vectors used by the solve.

Definition at line 374 of file EquationSystem.C.

Referenced by Moose::MFEM::EquationSystemProblemOperator::BuildEquationSystemOperator(), and Moose::MFEM::TimeDependentEquationSystemProblemOperator::BuildEquationSystemOperator().

{
  height = trueX.Size();
  width = trueRHS.Size();
  // Store block offsets
  _block_true_offsets.SetSize(trueX.NumBlocks() + 1);
  _block_true_offsets[0] = 0;
  for (unsigned i = 0; i < _trial_var_names.size(); i++)
    _block_true_offsets[i + 1] = trueX.BlockSize(i);
  _block_true_offsets.PartialSum();
  FormLinearSystem(_linear_operator, trueX, trueRHS);
}

FormSystemMatrix()

void Moose::MFEM::ComplexEquationSystem::FormSystemMatrix ( mfem::OperatorHandle &  op, mfem::BlockVector &  trueX, mfem::BlockVector &  trueRHS  )

overridevirtual

Form matrix representation of system operator as a HypreParMatrix.

Used when EquationSystem assembly level is set to 'LEGACY'.

Reimplemented from Moose::MFEM::EquationSystem.

Definition at line 238 of file ComplexEquationSystem.C.

{

  // Allocate block operator
  DeleteHBlocks();
  _h_blocks.SetSize(_test_var_names.size(), _trial_var_names.size());
  _h_blocks = nullptr;
  // Zero out RHS and sync memory
  trueRHS = 0.0;
  trueRHS.SyncToBlocks();

  // Form diagonal blocks.
  for (const auto i : index_range(_test_var_names))
  {
    auto & test_var_name = _test_var_names.at(i);

    mfem::Vector aux_x, aux_rhs;
    mfem::OperatorHandle aux_a;

    auto slf = _slfs.Get(test_var_name);
    slf->FormLinearSystem(_ess_tdof_lists.at(i),
                          *_cmplx_var_ess_constraints.at(i),
                          *_clfs.Get(test_var_name),
                          aux_a,
                          aux_x,
                          aux_rhs,
                          /*copy_interior=*/true);
    trueX.GetBlock(i) = aux_x;
    trueRHS.GetBlock(i) = aux_rhs;
    _h_blocks(i, i) = aux_a.As<mfem::ComplexHypreParMatrix>()->GetSystemMatrix();
  }
  // Sync memory
  trueX.SyncFromBlocks();
  trueRHS.SyncFromBlocks();

  // Create monolithic matrix
  op.Reset(mfem::HypreParMatrixFromBlocks(_h_blocks));
}

FormSystemOperator()

void Moose::MFEM::ComplexEquationSystem::FormSystemOperator ( mfem::OperatorHandle &  op, mfem::BlockVector &  trueX, mfem::BlockVector &  trueRHS  )

overridevirtual

Form matrix-free representation of system operator.

Used when EquationSystem assembly level is set to 'FULL', 'ELEMENT', 'PARTIAL', or 'NONE'.

Reimplemented from Moose::MFEM::EquationSystem.

Definition at line 211 of file ComplexEquationSystem.C.

{
  auto & test_var_name = _test_var_names.at(0);
  mfem::Vector aux_x, aux_rhs;
  mfem::OperatorPtr aux_a;

  auto slf = _slfs.Get(test_var_name);
  slf->FormLinearSystem(_ess_tdof_lists.at(0),
                        *_cmplx_var_ess_constraints.at(0),
                        *_clfs.Get(test_var_name),
                        aux_a,
                        aux_x,
                        aux_rhs,
                        /*copy_interior=*/true);

  trueX.GetBlock(0) = aux_x;
  trueRHS.GetBlock(0) = aux_rhs;
  trueX.SyncFromBlocks();
  trueRHS.SyncFromBlocks();

  op.Reset(aux_a.Ptr());
  aux_a.SetOperatorOwner(false);
}

GetGradient()

mfem::Operator & Moose::MFEM::EquationSystem::GetGradient ( const mfem::Vector &  u ) const

overrideinherited

Get Jacobian at the provided vector of true DoFs of trial variables.

Definition at line 456 of file EquationSystem.C.

{
  if (_non_linear)
  {
    if (_assembly_level != mfem::AssemblyLevel::LEGACY)
      mooseError("MFEM nonlinear solvers that require GetGradient() currently require legacy "
                 "assembly in EquationSystem.");
    const_cast<EquationSystem *>(this)->FormJacobianMatrix(u);
  }
  else
    _jacobian = _linear_operator;

  return *_jacobian;
}

GetTestVarNames()

const std::vector<std::string>& Moose::MFEM::EquationSystem::GetTestVarNames ( ) const

inlineinherited

Definition at line 74 of file EquationSystem.h.

Referenced by Moose::MFEM::EquationSystemProblemOperator::SetGridFunctions(), Moose::MFEM::ComplexEquationSystemProblemOperator::SetGridFunctions(), and Moose::MFEM::TimeDependentEquationSystemProblemOperator::SetGridFunctions().

{ return _test_var_names; }

GetTrialVarNames()

const std::vector<std::string>& Moose::MFEM::EquationSystem::GetTrialVarNames ( ) const

inlineinherited

Definition at line 73 of file EquationSystem.h.

Referenced by Moose::MFEM::EquationSystemProblemOperator::SetGridFunctions(), Moose::MFEM::ComplexEquationSystemProblemOperator::SetGridFunctions(), and Moose::MFEM::TimeDependentEquationSystemProblemOperator::SetGridFunctions().

{ return _trial_var_names; }

Init()

void Moose::MFEM::ComplexEquationSystem::Init ( GridFunctions &  gridfunctions, ComplexGridFunctions &  cmplx_gridfunctions, mfem::AssemblyLevel  assembly_level  )

overridevirtual

Initialise.

Reimplemented from Moose::MFEM::EquationSystem.

Definition at line 10 of file ComplexEquationSystem.C.

{
  _assembly_level = assembly_level;

  if (gridfunctions.size())
    mooseError("Mixing real and complex variables is currently not supported.");

  for (auto & test_var_name : _test_var_names)
  {
    if (!cmplx_gridfunctions.Has(test_var_name))
    {
      mooseError("MFEM complex variable ",
                 test_var_name,
                 " requested by equation system during initialization was "
                 "not found in gridfunctions");
    }
    // Store pointers to test FESpaces
    _test_pfespaces.push_back(cmplx_gridfunctions.Get(test_var_name)->ParFESpace());
    // Create auxiliary gridfunctions for storing essential constraints from Dirichlet conditions
    _cmplx_var_ess_constraints.emplace_back(std::make_unique<mfem::ParComplexGridFunction>(
        cmplx_gridfunctions.Get(test_var_name)->ParFESpace()));
  }

  // Store pointers to FESpaces of all coupled variables
  for (auto & coupled_var_name : _coupled_var_names)
    _coupled_pfespaces.push_back(cmplx_gridfunctions.Get(coupled_var_name)->ParFESpace());

  // Extract which coupled variables are to be trivially eliminated and which are trial variables
  SetTrialVariableNames();

  // Store pointers to coupled variable ComplexGridFunctions that are to be eliminated prior to
  // forming the jacobian
  for (auto & eliminated_var_name : _eliminated_var_names)
    _cmplx_eliminated_variables.Register(eliminated_var_name,
                                         cmplx_gridfunctions.GetShared(eliminated_var_name));

  // Get a reference to the complex GridFunctions
  _complex_gfuncs = &cmplx_gridfunctions;
}

Mult()

void Moose::MFEM::ComplexEquationSystem::Mult ( const mfem::Vector &  x, mfem::Vector &  y  ) const

overridevirtual

Nonlinear Mult (Used by Newton-solver not necessarily nonlinear)

Definition at line 281 of file ComplexEquationSystem.C.

{
  _linear_operator->Mult(x, residual);
  x.HostRead();
  residual.HostRead();
}

Nonlinear()

bool Moose::MFEM::EquationSystem::Nonlinear ( ) const

inlineinherited

Returns

Whether nonlinear integrators are present

Definition at line 79 of file EquationSystem.h.

Referenced by Moose::MFEM::ProblemOperatorBase::SolveWithOperator().

{ return _non_linear; }

PrepareLinearSolver()

void Moose::MFEM::EquationSystem::PrepareLinearSolver ( LinearSolverBase &  solver )

inherited

Prepare the provided linear solver.

First calls SetupLOR on the solver if it's using a Low Order Refined methodology and then calls SetOperator on the solver with the assembled linear operator

Definition at line 709 of file EquationSystem.C.

Referenced by Moose::MFEM::ProblemOperatorBase::SolveWithOperator().

{
  if (solver.IsLOR())
  {
    if (Complex())
      mooseError("LOR solve is not supported for complex equation systems.");
    if (_test_var_names.size() > 1)
      mooseError("LOR solve is only supported for single-variable systems");
    solver.SetupLOR(*_blfs.Get(_test_var_names.at(0)), _ess_tdof_lists.at(0));
  }

  mooseAssert(_linear_operator.Ptr(),
              "If we are preparing a linear solver, we better have a linear operator");
  solver.SetOperator(_linear_operator);
}

SetSolverRequiresGradient()

void Moose::MFEM::EquationSystem::SetSolverRequiresGradient ( bool  requires_gradient )

inlineinherited

Set whether the nonlinear solver driving this equation system requires Jacobian information.

Definition at line 66 of file EquationSystem.h.

  {
    _solver_requires_gradient = requires_gradient;
  }

SetTrialVariableNames()

void Moose::MFEM::EquationSystem::SetTrialVariableNames ( )

protectedvirtualinherited

Set trial variable names from subset of coupled variables that have an associated test variable.

Definition at line 77 of file EquationSystem.C.

Referenced by Init(), and Moose::MFEM::EquationSystem::Init().

{
  // If a coupled variable has an equation associated with it,
  // add it to the set of trial variables.
  for (const auto & test_var_name : _test_var_names)
    if (VectorContainsName(_coupled_var_names, test_var_name))
      _trial_var_names.push_back(test_var_name);

  // Otherwise, add it to the set of eliminated variables.
  for (const auto & coupled_var_name : _coupled_var_names)
    if (!VectorContainsName(_test_var_names, coupled_var_name))
      _eliminated_var_names.push_back(coupled_var_name);
}

SetTrialVariablesFromTrueVectors()

void Moose::MFEM::ComplexEquationSystem::SetTrialVariablesFromTrueVectors ( const mfem::BlockVector &  trueX ) const

overridevirtual

Update variable from solution vector after solve.

Reimplemented from Moose::MFEM::EquationSystem.

Definition at line 289 of file ComplexEquationSystem.C.

{
  for (const auto i : index_range(_trial_var_names))
  {
    auto & trial_var_name = _trial_var_names.at(i);
    trueX.GetBlock(i).SyncMemory(trueX);
    _complex_gfuncs->Get(trial_var_name)->Distribute(&(trueX.GetBlock(i)));
  }
}

VectorContainsName()

bool Moose::MFEM::EquationSystem::VectorContainsName ( const std::vector< std::string > &  the_vector, const std::string &  name  ) const

protectedinherited

Definition at line 49 of file EquationSystem.C.

Referenced by Moose::MFEM::EquationSystem::AddCoupledVariableNameIfMissing(), Moose::MFEM::EquationSystem::AddEliminatedVariableNameIfMissing(), Moose::MFEM::EquationSystem::AddTestVariableNameIfMissing(), Moose::MFEM::EquationSystem::EliminateCoupledVariables(), and Moose::MFEM::EquationSystem::SetTrialVariableNames().

{
  return std::find(the_vector.begin(), the_vector.end(), name) != the_vector.end();
}

Member Data Documentation

_assembly_level

mfem::AssemblyLevel Moose::MFEM::EquationSystem::_assembly_level

protectedinherited

Definition at line 263 of file EquationSystem.h.

Referenced by Moose::MFEM::TimeDependentEquationSystem::BuildBilinearForms(), BuildBilinearForms(), Moose::MFEM::EquationSystem::BuildBilinearForms(), Moose::MFEM::TimeDependentEquationSystem::BuildMixedBilinearForms(), Moose::MFEM::EquationSystem::BuildMixedBilinearForms(), Moose::MFEM::EquationSystem::FormLinearSystem(), Moose::MFEM::EquationSystem::GetGradient(), Init(), and Moose::MFEM::EquationSystem::Init().

_blfs

NamedFieldsMap<mfem::ParBilinearForm> Moose::MFEM::EquationSystem::_blfs

protectedinherited

Definition at line 239 of file EquationSystem.h.

Referenced by Moose::MFEM::TimeDependentEquationSystem::BuildBilinearForms(), Moose::MFEM::EquationSystem::BuildBilinearForms(), Moose::MFEM::EigenproblemEquationSystem::FormEigenproblemMatrix(), Moose::MFEM::EquationSystem::FormSystemMatrix(), Moose::MFEM::EquationSystem::FormSystemOperator(), and Moose::MFEM::EquationSystem::PrepareLinearSolver().

_block_true_offsets

mfem::Array<int> Moose::MFEM::EquationSystem::_block_true_offsets

protectedinherited

Definition at line 268 of file EquationSystem.h.

Referenced by Moose::MFEM::EquationSystem::ComputeNonlinearResidual(), Moose::MFEM::EquationSystem::FormJacobianMatrix(), and Moose::MFEM::EquationSystem::FormSystem().

_clfs

NamedFieldsMap<mfem::ParComplexLinearForm> Moose::MFEM::ComplexEquationSystem::_clfs

protected

Definition at line 112 of file ComplexEquationSystem.h.

Referenced by BuildLinearForms(), FormSystemMatrix(), and FormSystemOperator().

_cmplx_eliminated_variables

ComplexGridFunctions Moose::MFEM::ComplexEquationSystem::_cmplx_eliminated_variables

protected

Pointers to coupled variables not part of the reduced EquationSystem.

Definition at line 124 of file ComplexEquationSystem.h.

Referenced by Init().

_cmplx_essential_bc_map

NamedFieldsMap<std::vector<std::shared_ptr<MFEMComplexEssentialBC> > > Moose::MFEM::ComplexEquationSystem::_cmplx_essential_bc_map

protected

Definition at line 121 of file ComplexEquationSystem.h.

Referenced by AddComplexEssentialBCs(), and ApplyComplexEssentialBC().

_cmplx_integrated_bc_map

NamedFieldsMap<NamedFieldsMap<std::vector<std::shared_ptr<MFEMComplexIntegratedBC> > > > Moose::MFEM::ComplexEquationSystem::_cmplx_integrated_bc_map

protected

Definition at line 118 of file ComplexEquationSystem.h.

Referenced by AddComplexIntegratedBC(), BuildBilinearForms(), and BuildLinearForms().

_cmplx_kernels_map

NamedFieldsMap<NamedFieldsMap<std::vector<std::shared_ptr<MFEMComplexKernel> > > > Moose::MFEM::ComplexEquationSystem::_cmplx_kernels_map

protected

Definition at line 116 of file ComplexEquationSystem.h.

Referenced by AddComplexKernel(), BuildBilinearForms(), and BuildLinearForms().

_cmplx_var_ess_constraints

std::vector<std::unique_ptr<mfem::ParComplexGridFunction> > Moose::MFEM::ComplexEquationSystem::_cmplx_var_ess_constraints

protected

Complex Gridfunctions holding essential constraints from Dirichlet BCs.

Definition at line 127 of file ComplexEquationSystem.h.

Referenced by ApplyEssentialBCs(), FormSystemMatrix(), FormSystemOperator(), and Init().

_complex_gfuncs

Moose::MFEM::ComplexGridFunctions* Moose::MFEM::ComplexEquationSystem::_complex_gfuncs

protected

Definition at line 130 of file ComplexEquationSystem.h.

Referenced by ApplyEssentialBCs(), Init(), and SetTrialVariablesFromTrueVectors().

_coupled_pfespaces

std::vector<mfem::ParFiniteElementSpace *> Moose::MFEM::EquationSystem::_coupled_pfespaces

protectedinherited

Pointers to finite element spaces associated with coupled variables.

Definition at line 236 of file EquationSystem.h.

Referenced by Moose::MFEM::TimeDependentEquationSystem::BuildMixedBilinearForms(), Moose::MFEM::EquationSystem::BuildMixedBilinearForms(), Init(), and Moose::MFEM::EquationSystem::Init().

_coupled_var_names

std::vector<std::string> Moose::MFEM::EquationSystem::_coupled_var_names

protectedinherited

Names of all trial variables of kernels and boundary conditions added to this EquationSystem.

Definition at line 222 of file EquationSystem.h.

Referenced by Moose::MFEM::EquationSystem::AddCoupledVariableNameIfMissing(), Moose::MFEM::TimeDependentEquationSystem::BuildMixedBilinearForms(), Moose::MFEM::EquationSystem::BuildMixedBilinearForms(), Init(), Moose::MFEM::EquationSystem::Init(), and Moose::MFEM::EquationSystem::SetTrialVariableNames().

_eliminated_var_names

std::vector<std::string> Moose::MFEM::EquationSystem::_eliminated_var_names

protectedinherited

Names of all coupled variables without a corresponding test variable.

Definition at line 228 of file EquationSystem.h.

Referenced by Moose::MFEM::EquationSystem::AddEliminatedVariableNameIfMissing(), Moose::MFEM::TimeDependentEquationSystem::EliminateCoupledVariables(), Moose::MFEM::EquationSystem::EliminateCoupledVariables(), Init(), Moose::MFEM::EquationSystem::Init(), and Moose::MFEM::EquationSystem::SetTrialVariableNames().

_eliminated_variables

Moose::MFEM::GridFunctions Moose::MFEM::EquationSystem::_eliminated_variables

protectedinherited

Pointers to coupled variables not part of the reduced EquationSystem.

Definition at line 230 of file EquationSystem.h.

Referenced by Moose::MFEM::TimeDependentEquationSystem::EliminateCoupledVariables(), Moose::MFEM::EquationSystem::EliminateCoupledVariables(), and Moose::MFEM::EquationSystem::Init().

_ess_tdof_lists

std::vector<mfem::Array<int> > Moose::MFEM::EquationSystem::_ess_tdof_lists

protectedinherited

Definition at line 246 of file EquationSystem.h.

Referenced by Moose::MFEM::EigenproblemEquationSystem::ApplyEssentialBCs(), ApplyEssentialBCs(), Moose::MFEM::EquationSystem::ApplyEssentialBCs(), Moose::MFEM::TimeDependentEquationSystem::BuildNonlinearForms(), Moose::MFEM::EquationSystem::BuildNonlinearForms(), FormSystemMatrix(), Moose::MFEM::EquationSystem::FormSystemMatrix(), FormSystemOperator(), Moose::MFEM::EquationSystem::FormSystemOperator(), and Moose::MFEM::EquationSystem::PrepareLinearSolver().

_essential_bc_map

NamedFieldsMap<std::vector<std::shared_ptr<MFEMEssentialBC> > > Moose::MFEM::EquationSystem::_essential_bc_map

protectedinherited

Arrays to store essential BCs to act on each component of weak form.

Named according to test variable.

Definition at line 257 of file EquationSystem.h.

Referenced by Moose::MFEM::EquationSystem::AddEssentialBC(), and Moose::MFEM::EquationSystem::ApplyEssentialBC().

_gfuncs

Moose::MFEM::GridFunctions* Moose::MFEM::EquationSystem::_gfuncs

protectedinherited

Definition at line 266 of file EquationSystem.h.

Referenced by Moose::MFEM::EigenproblemEquationSystem::ApplyEssentialBCs(), Moose::MFEM::EquationSystem::ApplyEssentialBCs(), Moose::MFEM::EquationSystem::Init(), and Moose::MFEM::EquationSystem::SetTrialVariablesFromTrueVectors().

_h_blocks

mfem::Array2D<const mfem::HypreParMatrix *> Moose::MFEM::EquationSystem::_h_blocks

protectedinherited

Definition at line 248 of file EquationSystem.h.

Referenced by Moose::MFEM::EquationSystem::DeleteHBlocks(), Moose::MFEM::EquationSystem::DeleteJacobianBlocks(), Moose::MFEM::EquationSystem::FormJacobianMatrix(), FormSystemMatrix(), and Moose::MFEM::EquationSystem::FormSystemMatrix().

_integrated_bc_map

NamedFieldsMap<NamedFieldsMap<std::vector<std::shared_ptr<MFEMIntegratedBC> > > > Moose::MFEM::EquationSystem::_integrated_bc_map

protectedinherited

Arrays to store integrated BCs to act on each component of weak form.

Named according to test and trial variables.

Definition at line 254 of file EquationSystem.h.

Referenced by Moose::MFEM::EquationSystem::AddIntegratedBC(), Moose::MFEM::TimeDependentEquationSystem::BuildBilinearForms(), Moose::MFEM::EquationSystem::BuildBilinearForms(), Moose::MFEM::EquationSystem::BuildLinearForms(), Moose::MFEM::TimeDependentEquationSystem::BuildMixedBilinearForms(), Moose::MFEM::TimeDependentEquationSystem::BuildNonlinearForms(), and Moose::MFEM::EquationSystem::BuildNonlinearForms().

_jacobian

mfem::OperatorHandle Moose::MFEM::EquationSystem::_jacobian

mutableprotectedinherited

Definition at line 260 of file EquationSystem.h.

Referenced by Moose::MFEM::EigenproblemEquationSystem::FormEigenproblemMatrix(), Moose::MFEM::EquationSystem::FormJacobianMatrix(), Moose::MFEM::EquationSystem::GetGradient(), and Moose::MFEM::EigenproblemEquationSystem::PrepareEigensolver().

_jacobian_blocks

mfem::Array2D<const mfem::HypreParMatrix *> Moose::MFEM::EquationSystem::_jacobian_blocks

protectedinherited

Definition at line 248 of file EquationSystem.h.

Referenced by Moose::MFEM::EquationSystem::DeleteHBlocks(), Moose::MFEM::EquationSystem::DeleteJacobianBlocks(), and Moose::MFEM::EquationSystem::FormJacobianMatrix().

_kernels_map

NamedFieldsMap<NamedFieldsMap<std::vector<std::shared_ptr<MFEMKernel> > > > Moose::MFEM::EquationSystem::_kernels_map

protectedinherited

Arrays to store kernels to act on each component of weak form.

Named according to test and trial variables.

Definition at line 251 of file EquationSystem.h.

Referenced by Moose::MFEM::EquationSystem::AddKernel(), Moose::MFEM::TimeDependentEquationSystem::BuildBilinearForms(), Moose::MFEM::EquationSystem::BuildBilinearForms(), Moose::MFEM::EquationSystem::BuildLinearForms(), Moose::MFEM::TimeDependentEquationSystem::BuildMixedBilinearForms(), Moose::MFEM::EquationSystem::BuildMixedBilinearForms(), Moose::MFEM::TimeDependentEquationSystem::BuildNonlinearForms(), and Moose::MFEM::EquationSystem::BuildNonlinearForms().

_lfs

NamedFieldsMap<mfem::ParLinearForm> Moose::MFEM::EquationSystem::_lfs

protectedinherited

Definition at line 240 of file EquationSystem.h.

Referenced by Moose::MFEM::EquationSystem::BuildLinearForms(), Moose::MFEM::TimeDependentEquationSystem::EliminateCoupledVariables(), Moose::MFEM::EquationSystem::EliminateCoupledVariables(), Moose::MFEM::EquationSystem::FormSystemMatrix(), and Moose::MFEM::EquationSystem::FormSystemOperator().

_linear_operator

mfem::OperatorHandle Moose::MFEM::EquationSystem::_linear_operator

mutableprotectedinherited

Definition at line 262 of file EquationSystem.h.

Referenced by Moose::MFEM::EquationSystem::FormSystem(), Moose::MFEM::EquationSystem::GetGradient(), Mult(), Moose::MFEM::EquationSystem::Mult(), and Moose::MFEM::EquationSystem::PrepareLinearSolver().

_mblfs

NamedFieldsMap<NamedFieldsMap<mfem::ParMixedBilinearForm> > Moose::MFEM::EquationSystem::_mblfs

protectedinherited

Definition at line 242 of file EquationSystem.h.

Referenced by Moose::MFEM::TimeDependentEquationSystem::BuildMixedBilinearForms(), Moose::MFEM::EquationSystem::BuildMixedBilinearForms(), Moose::MFEM::EquationSystem::EliminateCoupledVariables(), and Moose::MFEM::EquationSystem::FormSystemMatrix().

_nlfs

NamedFieldsMap<mfem::ParNonlinearForm> Moose::MFEM::EquationSystem::_nlfs

protectedinherited

Definition at line 241 of file EquationSystem.h.

Referenced by Moose::MFEM::TimeDependentEquationSystem::BuildNonlinearForms(), Moose::MFEM::EquationSystem::BuildNonlinearForms(), Moose::MFEM::EquationSystem::ComputeNonlinearResidual(), and Moose::MFEM::EquationSystem::FormJacobianMatrix().

_non_linear

bool Moose::MFEM::EquationSystem::_non_linear = false

protectedinherited

Definition at line 270 of file EquationSystem.h.

Referenced by Moose::MFEM::EquationSystem::ApplyBoundaryNLFIntegrators(), Moose::MFEM::EquationSystem::ApplyDomainNLFIntegrators(), Moose::MFEM::EquationSystem::ComputeNonlinearResidual(), Moose::MFEM::EquationSystem::GetGradient(), Moose::MFEM::EquationSystem::Mult(), and Moose::MFEM::EquationSystem::Nonlinear().

_slfs

NamedFieldsMap<mfem::ParSesquilinearForm> Moose::MFEM::ComplexEquationSystem::_slfs

protected

Definition at line 111 of file ComplexEquationSystem.h.

Referenced by BuildBilinearForms(), FormSystemMatrix(), and FormSystemOperator().

_solver_requires_gradient

bool Moose::MFEM::EquationSystem::_solver_requires_gradient = false

protectedinherited

Definition at line 272 of file EquationSystem.h.

Referenced by Moose::MFEM::EquationSystem::ApplyBoundaryNLFIntegrators(), Moose::MFEM::EquationSystem::ApplyDomainNLFIntegrators(), and Moose::MFEM::EquationSystem::SetSolverRequiresGradient().

_test_pfespaces

std::vector<mfem::ParFiniteElementSpace *> Moose::MFEM::EquationSystem::_test_pfespaces

protectedinherited

Pointers to finite element spaces associated with test variables.

Definition at line 234 of file EquationSystem.h.

Referenced by Moose::MFEM::TimeDependentEquationSystem::BuildBilinearForms(), BuildBilinearForms(), Moose::MFEM::EquationSystem::BuildBilinearForms(), BuildLinearForms(), Moose::MFEM::EquationSystem::BuildLinearForms(), Moose::MFEM::TimeDependentEquationSystem::BuildMixedBilinearForms(), Moose::MFEM::EquationSystem::BuildMixedBilinearForms(), Moose::MFEM::TimeDependentEquationSystem::BuildNonlinearForms(), Moose::MFEM::EquationSystem::BuildNonlinearForms(), Moose::MFEM::EigenproblemEquationSystem::FormMassMatrix(), Moose::MFEM::EquationSystem::FormSystemMatrix(), Init(), and Moose::MFEM::EquationSystem::Init().

_test_var_names

std::vector<std::string> Moose::MFEM::EquationSystem::_test_var_names

protectedinherited

Names of all test variables corresponding to linear forms in this equation system.

Definition at line 232 of file EquationSystem.h.

Referenced by Moose::MFEM::EquationSystem::AddTestVariableNameIfMissing(), Moose::MFEM::TimeDependentEquationSystem::BuildBilinearForms(), BuildBilinearForms(), Moose::MFEM::EquationSystem::BuildBilinearForms(), Moose::MFEM::EigenproblemEquationSystem::BuildEigenproblemJacobian(), BuildLinearForms(), Moose::MFEM::EquationSystem::BuildLinearForms(), Moose::MFEM::TimeDependentEquationSystem::BuildMixedBilinearForms(), Moose::MFEM::EquationSystem::BuildMixedBilinearForms(), Moose::MFEM::TimeDependentEquationSystem::BuildNonlinearForms(), Moose::MFEM::EquationSystem::BuildNonlinearForms(), Moose::MFEM::EquationSystem::ComputeNonlinearResidual(), Moose::MFEM::TimeDependentEquationSystem::EliminateCoupledVariables(), Moose::MFEM::EquationSystem::EliminateCoupledVariables(), Moose::MFEM::EigenproblemEquationSystem::FormEigenproblemMatrix(), Moose::MFEM::EquationSystem::FormJacobianMatrix(), Moose::MFEM::EquationSystem::FormLinearSystem(), FormSystemMatrix(), Moose::MFEM::EquationSystem::FormSystemMatrix(), FormSystemOperator(), Moose::MFEM::EquationSystem::FormSystemOperator(), Moose::MFEM::EquationSystem::GetTestVarNames(), Init(), Moose::MFEM::EquationSystem::Init(), Moose::MFEM::EquationSystem::PrepareLinearSolver(), and Moose::MFEM::EquationSystem::SetTrialVariableNames().

_trial_var_names

std::vector<std::string> Moose::MFEM::EquationSystem::_trial_var_names

protectedinherited

Subset of _coupled_var_names of all variables corresponding to gridfunctions with degrees of freedom that comprise the state vector of this EquationSystem.

This will differ from _coupled_var_names when time derivatives or other eliminated variables are present.

Definition at line 226 of file EquationSystem.h.

Referenced by Moose::MFEM::EigenproblemEquationSystem::ApplyEssentialBCs(), ApplyEssentialBCs(), Moose::MFEM::EquationSystem::ApplyEssentialBCs(), Moose::MFEM::EigenproblemEquationSystem::BuildEigenproblemJacobian(), Moose::MFEM::TimeDependentEquationSystem::BuildMixedBilinearForms(), Moose::MFEM::EquationSystem::FormJacobianMatrix(), Moose::MFEM::EquationSystem::FormLinearSystem(), Moose::MFEM::EquationSystem::FormSystem(), FormSystemMatrix(), Moose::MFEM::EquationSystem::FormSystemMatrix(), Moose::MFEM::EquationSystem::GetTrialVarNames(), Moose::MFEM::EquationSystem::Init(), Moose::MFEM::EquationSystem::SetTrialVariableNames(), Moose::MFEM::EquationSystem::SetTrialVariablesFromTrueVectors(), and SetTrialVariablesFromTrueVectors().

_var_ess_constraints

std::vector<std::unique_ptr<mfem::ParGridFunction> > Moose::MFEM::EquationSystem::_var_ess_constraints

protectedinherited

Gridfunctions holding essential constraints from Dirichlet BCs.

Definition at line 245 of file EquationSystem.h.

Referenced by Moose::MFEM::EigenproblemEquationSystem::ApplyEssentialBCs(), Moose::MFEM::EquationSystem::ApplyEssentialBCs(), Moose::MFEM::EquationSystem::FormSystemMatrix(), Moose::MFEM::EquationSystem::FormSystemOperator(), and Moose::MFEM::EquationSystem::Init().

---

The documentation for this class was generated from the following files:

• include/mfem/equation_systems/ComplexEquationSystem.h
• src/mfem/equation_systems/ComplexEquationSystem.C