DeleteElementsNearMeshGenerator.C

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//* This file is part of the MOOSE framework
//* https://mooseframework.inl.gov
//*
//* All rights reserved, see COPYRIGHT for full restrictions
//* https://github.com/idaholab/moose/blob/master/COPYRIGHT
//*
//* Licensed under LGPL 2.1, please see LICENSE for details
//* https://www.gnu.org/licenses/lgpl-2.1.html
 
#include "DeleteElementsNearMeshGenerator.h"
#include "SetupQuadratureAction.h"
#include "KDTree.h"
#include "MooseMeshUtils.h"
 
#include "libmesh/type_vector.h"
#include "libmesh/point.h"
#include "libmesh/elem.h"
#include "libmesh/fe_base.h"
#include "libmesh/quadrature_gauss.h"
 
registerMooseObject("MooseApp", DeleteElementsNearMeshGenerator);
 
InputParameters
DeleteElementsNearMeshGenerator::validParams()
{
  InputParameters params = ElementDeletionGeneratorBase::validParams();
 
  params.addClassDescription(
      "Removes elements lying \"near\" another mesh. The proximity is examined by the distance "
      "from "
      "the element's centroid to the faces of elements of the \"proximity_mesh\"");
  params.addParam<std::vector<SubdomainName>>(
      "blocks_included",
      {},
      "Subdomains from the input mesh that may have their elements deleted if they are close to "
      "the proximity mesh");
  params.addRequiredParam<MeshGeneratorName>("proximity_mesh",
                                             "Mesh providing the deletion criterion");
  params.addRequiredRangeCheckedParam<Real>(
      "distance",
      "distance>0",
      "The distance from the centroid of elements in the 'input' mesh to elements in the "
      "'proximity_mesh' under which they are marked for deletion");
  auto options_order = SetupQuadratureAction::getQuadratureOrderEnum();
  options_order.assign("CONSTANT");
  params.addParam<MooseEnum>("side_order",
                             options_order,
                             "Order of the face quadrature used to find the nearest face in the "
                             "'proximity_mesh'. Default is CONSTANT");
 
  return params;
}
 
DeleteElementsNearMeshGenerator::DeleteElementsNearMeshGenerator(const InputParameters & parameters)
  : ElementDeletionGeneratorBase(parameters),
    _blocks_included(getParam<std::vector<SubdomainName>>("blocks_included")),
    _proximity_mesh(getMesh("proximity_mesh")),
    _distance(getParam<Real>("distance"))
{
}
 
std::unique_ptr<MeshBase>
DeleteElementsNearMeshGenerator::generate()
{
  // Process the inclusion list of subdomains
  _blocks_included_ids = MooseMeshUtils::getSubdomainIDs(*_input, _blocks_included);
 
  // Build the point locator to detect elements inside
  _pl = _proximity_mesh->sub_point_locator();
  _pl->enable_out_of_mesh_mode();
 
  // Build a KNN with side Qps. This will help locate the nearest side if known to be outside
  // NOTE: side Qps are just one option. We could have done nodes, side centroids (~ side Qp at
  // order 0)
  std::vector<Point> all_side_qps;
  const auto & order = getParam<MooseEnum>("side_order");
  const auto order_enum = Moose::stringToEnum<Order>(order);
  for (const auto * const elem : _proximity_mesh->element_ptr_range())
  {
    // Build side then side Qps
    const auto dim = elem->dim();
    for (const auto side_i : make_range(elem->n_sides()))
    {
      // Internal sides cannot be closest to an external point
      if (elem->neighbor_ptr(side_i))
        continue;
      const std::unique_ptr<const Elem> face = elem->build_side_ptr(side_i);
      std::unique_ptr<libMesh::FEBase> fe(
          libMesh::FEBase::build(dim, libMesh::FEType(elem->default_order())));
      libMesh::QGauss qface(dim - 1, order_enum);
      fe->attach_quadrature_rule(&qface);
      const auto & qpoints = fe->get_xyz();
      fe->reinit(elem, side_i);
      all_side_qps.insert(all_side_qps.end(), qpoints.begin(), qpoints.end());
    }
  }
  mooseAssert(!all_side_qps.empty(), "Should have found side Qps");
  _kd_tree = std::make_unique<KDTree>(all_side_qps, /*max leaf size*/ 1);
 
  // Abide by the rules
  // NOTE: don't use _proximity_mesh in shouldDelete()! It won't work, it's gone
  const auto prox_mg = std::move(_proximity_mesh);
 
  // Perform the deletions
  return ElementDeletionGeneratorBase::generate();
}
 
bool
DeleteElementsNearMeshGenerator::shouldDelete(const Elem * elem)
{
  const auto delete_due_to_point = [this](const Point & pt) -> bool
  {
    // Proximity mesh contains the point, distance is zero
    if ((*_pl)(pt))
      return true;
 
    // Use the KNN to get the distance
    std::vector<Real> distance_sqr(2);
    std::vector<std::size_t> return_indices(2);
    _kd_tree->neighborSearch(pt, /*num_search*/ 1, return_indices, distance_sqr);
    const auto distance =
        distance_sqr.empty() ? std::numeric_limits<Real>::max() : std::sqrt(distance_sqr[0]);
 
    return distance < _distance;
  };
 
  // Check if element is in the included subdomains
  if (_blocks_included_ids.size() &&
      std::find(_blocks_included_ids.begin(), _blocks_included_ids.end(), elem->subdomain_id()) ==
          _blocks_included_ids.end())
    return false;
 
  // Check element centroid
  const auto centroid = elem->vertex_average();
  if (delete_due_to_point(centroid))
    return true;
 
  // Then its nodes. For convex elements, this should be enough
  for (const auto & node : elem->node_ref_range())
    if (delete_due_to_point(node))
      return true;
 
  return false;
}