SquaredExponentialCovariance.C

Go to the documentation of this file.

//* This file is part of the MOOSE framework
//* https://mooseframework.inl.gov
//*
//* All rights reserved, see COPYRIGHT for full restrictions
//* https://github.com/idaholab/moose/blob/master/COPYRIGHT
//*
//* Licensed under LGPL 2.1, please see LICENSE for details
//* https://www.gnu.org/licenses/lgpl-2.1.html

#include "SquaredExponentialCovariance.h"
#include <cmath>

registerMooseObject("StochasticToolsApp", SquaredExponentialCovariance);

InputParameters
SquaredExponentialCovariance::validParams()
{
  InputParameters params = CovarianceFunctionBase::validParams();
  params.addClassDescription("Squared Exponential covariance function.");
  params.addRequiredParam<std::vector<Real>>("length_factor",
                                             "Length factors to use for Covariance Kernel");
  params.addRequiredParam<Real>("signal_variance",
                                "Signal Variance ($\\sigma_f^2$) to use for kernel calculation.");
  params.addParam<Real>(
      "noise_variance", 0.0, "Noise Variance ($\\sigma_n^2$) to use for kernel calculation.");
  return params;
}

SquaredExponentialCovariance::SquaredExponentialCovariance(const InputParameters & parameters)
  : CovarianceFunctionBase(parameters),
    _length_factor(addVectorRealHyperParameter(
        "length_factor", getParam<std::vector<Real>>("length_factor"), true)),
    _sigma_f_squared(
        addRealHyperParameter("signal_variance", getParam<Real>("signal_variance"), true)),
    _sigma_n_squared(
        addRealHyperParameter("noise_variance", getParam<Real>("noise_variance"), true))
{
}

void
SquaredExponentialCovariance::computeCovarianceMatrix(RealEigenMatrix & K,
                                                      const RealEigenMatrix & x,
                                                      const RealEigenMatrix & xp,
                                                      const bool is_self_covariance) const
{
  if ((unsigned)x.cols() != _length_factor.size())
    mooseError("length_factor size does not match dimension of trainer input.");

  SquaredExponentialFunction(
      K, x, xp, _length_factor, _sigma_f_squared, _sigma_n_squared, is_self_covariance);
}

void
SquaredExponentialCovariance::SquaredExponentialFunction(RealEigenMatrix & K,
                                                         const RealEigenMatrix & x,
                                                         const RealEigenMatrix & xp,
                                                         const std::vector<Real> & length_factor,
                                                         const Real sigma_f_squared,
                                                         const Real sigma_n_squared,
                                                         const bool is_self_covariance)
{
  unsigned int num_samples_x = x.rows();
  unsigned int num_samples_xp = xp.rows();
  unsigned int num_params_x = x.cols();

  mooseAssert(num_params_x == xp.cols(),
              "Number of parameters do not match in covariance kernel calculation");

  for (unsigned int ii = 0; ii < num_samples_x; ++ii)
  {
    for (unsigned int jj = 0; jj < num_samples_xp; ++jj)
    {
      // Compute distance per parameter, scaled by length factor
      Real r_squared_scaled = 0;
      for (unsigned int kk = 0; kk < num_params_x; ++kk)
        r_squared_scaled += std::pow((x(ii, kk) - xp(jj, kk)) / length_factor[kk], 2);
      K(ii, jj) = sigma_f_squared * std::exp(-r_squared_scaled / 2.0);
    }
    if (is_self_covariance)
      K(ii, ii) += sigma_n_squared;
  }
}

bool
SquaredExponentialCovariance::computedKdhyper(RealEigenMatrix & dKdhp,
                                              const RealEigenMatrix & x,
                                              const std::string & hyper_param_name,
                                              unsigned int ind) const
{
  if (name().length() + 1 > hyper_param_name.length())
    return false;

  const std::string name_without_prefix = hyper_param_name.substr(name().length() + 1);

  if (name_without_prefix == "noise_variance")
  {
    SquaredExponentialFunction(dKdhp, x, x, _length_factor, 0, 1, true);
    return true;
  }

  if (name_without_prefix == "signal_variance")
  {
    SquaredExponentialFunction(dKdhp, x, x, _length_factor, 1, 0, false);
    return true;
  }

  if (name_without_prefix == "length_factor")
  {
    computedKdlf(dKdhp, x, _length_factor, _sigma_f_squared, ind);
    return true;
  }

  return false;
}

void
SquaredExponentialCovariance::computedKdlf(RealEigenMatrix & K,
                                           const RealEigenMatrix & x,
                                           const std::vector<Real> & length_factor,
                                           const Real sigma_f_squared,
                                           const int ind)
{
  unsigned int num_samples_x = x.rows();
  unsigned int num_params_x = x.cols();

  mooseAssert(ind < x.cols(), "Incorrect length factor index");

  for (unsigned int ii = 0; ii < num_samples_x; ++ii)
  {
    for (unsigned int jj = 0; jj < num_samples_x; ++jj)
    {
      // Compute distance per parameter, scaled by length factor
      Real r_squared_scaled = 0;
      for (unsigned int kk = 0; kk < num_params_x; ++kk)
        r_squared_scaled += std::pow((x(ii, kk) - x(jj, kk)) / length_factor[kk], 2);
      K(ii, jj) = sigma_f_squared * std::exp(-r_squared_scaled / 2.0);
      K(ii, jj) =
          std::pow(x(ii, ind) - x(jj, ind), 2) / std::pow(length_factor[ind], 3) * K(ii, jj);
    }
  }
}