GeochemicalDatabaseValidatorTest.C File Reference

Go to the source code of this file.

Functions
void	testExceptionMessage (const FileName filename, const std::string msg)
	TEST (GeochemicalDatabaseValidatorTest, validateTestDB)
	TEST (GeochemicalDatabaseValidatorTest, missingHeader)
	TEST (GeochemicalDatabaseValidatorTest, missingTemperature)
	TEST (GeochemicalDatabaseValidatorTest, missingActivityModel)
	TEST (GeochemicalDatabaseValidatorTest, missingLogKValue)
	TEST (GeochemicalDatabaseValidatorTest, nonRealValue)
	TEST (GeochemicalDatabaseValidatorTest, nonReaArraylValue)
	TEST (GeochemicalDatabaseValidatorTest, nonReaWeight)
	TEST (GeochemicalDatabaseValidatorTest, nonReaNeutralSpeciesArray)
	TEST (GeochemicalDatabaseValidatorTest, missingNeutralValue)
	TEST (GeochemicalDatabaseValidatorTest, noCharge)
	TEST (GeochemicalDatabaseValidatorTest, noStoichiometry)

Function Documentation

TEST() [1/12]

TEST	(	GeochemicalDatabaseValidatorTest	,
		missingActivityModel
	)

Definition at line 68 of file GeochemicalDatabaseValidatorTest.C.

{
  const FileName filename = "database/faultydbs/missing_activity.json";
  const std::string msg = "The MOOSE database " + filename +
                          " does not have a required \"Header:activity model\" field";
  testExceptionMessage(filename, msg);
}

TEST() [2/12]

TEST	(	GeochemicalDatabaseValidatorTest	,
		missingHeader
	)

Definition at line 52 of file GeochemicalDatabaseValidatorTest.C.

{
  const FileName filename = "database/faultydbs/missing_header.json";
  const std::string msg =
      "The MOOSE database " + filename + " does not have a required \"Header\" field";
  testExceptionMessage(filename, msg);
}

TEST() [3/12]

TEST	(	GeochemicalDatabaseValidatorTest	,
		missingLogKValue
	)

Definition at line 76 of file GeochemicalDatabaseValidatorTest.C.

{
  const FileName filename = "database/faultydbs/missing_value.json";
  const std::string msg =
      "The number of values in the logk field of secondary species CO2(aq) in " + filename +
      " is not equal to the number of temperature values";
  testExceptionMessage(filename, msg);
}

TEST() [4/12]

TEST	(	GeochemicalDatabaseValidatorTest	,
		missingNeutralValue
	)

Definition at line 118 of file GeochemicalDatabaseValidatorTest.C.

{
  const FileName filename = "database/faultydbs/missing_neutral_value.json";
  const std::string msg = "The number of values in the Header:neutral species:h2o:a field of " +
                          filename + " is not equal to the number of temperature values";
  testExceptionMessage(filename, msg);
}

TEST() [5/12]

TEST	(	GeochemicalDatabaseValidatorTest	,
		missingTemperature
	)

Definition at line 60 of file GeochemicalDatabaseValidatorTest.C.

{
  const FileName filename = "database/faultydbs/missing_temperature.json";
  const std::string msg =
      "The MOOSE database " + filename + " does not have a required \"Header:temperatures\" field";
  testExceptionMessage(filename, msg);
}

TEST() [6/12]

TEST	(	GeochemicalDatabaseValidatorTest	,
		noCharge
	)

Definition at line 126 of file GeochemicalDatabaseValidatorTest.C.

{
  const FileName filename = "database/faultydbs/no_charge.json";
  const std::string msg = "The secondary species CO3-- in " + filename + " does not have a charge";
  testExceptionMessage(filename, msg);
}

TEST() [7/12]

TEST	(	GeochemicalDatabaseValidatorTest	,
		nonReaArraylValue
	)

Definition at line 93 of file GeochemicalDatabaseValidatorTest.C.

{
  const FileName filename = "database/faultydbs/nonreal_arrayvalue.json";
  const std::string msg = "Array value \"abcd\" in the logk field of mineral species Calcite in "
                          "database/faultydbs/nonreal_arrayvalue.json cannot be converted to Real";
  testExceptionMessage(filename, msg);
}

TEST() [8/12]

TEST	(	GeochemicalDatabaseValidatorTest	,
		nonRealValue
	)

Definition at line 85 of file GeochemicalDatabaseValidatorTest.C.

{
  const FileName filename = "database/faultydbs/nonreal_value.json";
  const std::string msg = "radius value \"4.5x\" of the secondary species CO3-- in "
                          "database/faultydbs/nonreal_value.json cannot be converted to Real";
  testExceptionMessage(filename, msg);
}

TEST() [9/12]

TEST	(	GeochemicalDatabaseValidatorTest	,
		nonReaNeutralSpeciesArray
	)

Definition at line 110 of file GeochemicalDatabaseValidatorTest.C.

{
  const FileName filename = "database/faultydbs/nonreal_neutralspecies.json";
  const std::string msg = "Array value \".1967cg\" in the Header:neutral species:co2:a field of " +
                          filename + " cannot be converted to Real";
  testExceptionMessage(filename, msg);
}

TEST() [10/12]

TEST	(	GeochemicalDatabaseValidatorTest	,
		nonReaWeight
	)

Definition at line 101 of file GeochemicalDatabaseValidatorTest.C.

{
  const FileName filename = "database/faultydbs/nonreal_weight.json";
  const std::string msg =
      "Weight value \"1.xyz\" of constituent HCO3- of the secondary species CO3-- in "
      "database/faultydbs/nonreal_weight.json cannot be converted to Real";
  testExceptionMessage(filename, msg);
}

TEST() [11/12]

TEST	(	GeochemicalDatabaseValidatorTest	,
		noStoichiometry
	)

Definition at line 133 of file GeochemicalDatabaseValidatorTest.C.

{
  const FileName filename = "database/faultydbs/no_stoi.json";
  const std::string msg = "The secondary species CO3-- in " + filename + " does not have a species";
  testExceptionMessage(filename, msg);
}

TEST() [12/12]

TEST	(	GeochemicalDatabaseValidatorTest	,
		validateTestDB
	)

Definition at line 38 of file GeochemicalDatabaseValidatorTest.C.

{
  // Read the JSON database
  FileName filename = "database/moose_testdb.json";
  std::ifstream jsondata(filename);
  nlohmann::json root;
  jsondata >> root;
 
  // This database should have valid entries for all species and sections,
  // so shouldn't throw any exceptions
  GeochemicalDatabaseValidator database(filename, root);
  EXPECT_NO_THROW(database.validate());
}

testExceptionMessage()

void testExceptionMessage	(	const FileName	filename,
		const std::string	msg
	)

Definition at line 16 of file GeochemicalDatabaseValidatorTest.C.

{
  // Read the faulty JSON database
  std::ifstream jsondata(filename);
  nlohmann::json root;
  jsondata >> root;
 
  GeochemicalDatabaseValidator database(filename, root);
 
  // Check that validating throws the expected error message
  try
  {
    database.validate();
    FAIL() << "Missing expected exception.";
  }
  catch (const std::exception & err)
  {
    std::size_t pos = std::string(err.what()).find(msg);
    ASSERT_TRUE(pos != std::string::npos);
  }
}

Referenced by TEST(), TEST(), TEST(), TEST(), TEST(), TEST(), TEST(), TEST(), TEST(), TEST(), and TEST().