- inputThe mesh we want to modify
C++ Type:MeshGeneratorName
Description:The mesh we want to modify
RenameBlockGenerator
RenameBlock re-numbers or re-names an old_block_id or old_block_name with a new_block_id or new_block_name. If using RenameBlock to merge blocks (by giving them the same name, for instance) it is advisable to specify all your blocks in old_blocks to avoid inconsistencies
RenameBlockGenerator is usually used to provide meaningful names to blocks so that input files are easier to read. For instance
old_block_id = '1 2 3'
new_block_name = 'wheel engine axle'
Then the MOOSE input file can employ block = wheel rather than block = 1. RenameBlockGenerator may also be to provide more meaningful names to mesh blocks that are already named. For instance
old_block_name = 'silly meaningless crazy'
new_block_name = 'wheel engine axle'
Then the MOOSE input file can employ block = axle rather than block = crazy.
warning
RenameBlockGenerator may also be used to merge blocks, but care must be taken.
For instance
old_block_id = '1 2 3'
new_block_id = '4 4 4'
Then blocks 1, 2 and 3 will be merged together into one block that may be used in the remainder of the input file. However, when merging blocks problems and even inconsistencies can occur.
Firstly, in the example just given, what if the blocks 1, 2 and 3 were named? What should the name of the block 4 be? The convention is that it is the name of the first old block that is given the block ID of 4, which is the name of the old block 1 in this case. The user needs to be aware of this convention. Similarly, if old_block_name = 'oldA oldB' and new_block_name = 'new1 new1', then the block ID of new1 is the block ID of oldA.
Secondly, in the example above, what if block 4 already existed? An inconsistency could arise in the input file, because block 4 is now given the name of the old block 1.
Thirdly, in this example old_block_id = '1 2' and new_block_name = 'wheel wheel'
what if another block, with a different ID, already had the name "wheel"? This can lead to great confusion in the MOOSE input file.
note
Given all these potential problems, when merging blocks it is strongly recommended to use just one** RenameBlock that includes the names or IDs of all** the blocks involved in the merging. This will make the new block IDs and new block names unequivocally obvious.
Input Parameters
- new_block_idElements with the old block number (or name) will be given this block number. If the old blocks are named, their names will be passed onto the newly numbered blocks.
C++ Type:std::vector
Options:
Description:Elements with the old block number (or name) will be given this block number. If the old blocks are named, their names will be passed onto the newly numbered blocks.
- new_block_nameElements with the old block number (or name) will be given this block name. No change of block ID is performed, unless multiple old blocks are given the same name, in which case they are all given the first old block number.
C++ Type:std::vector
Options:
Description:Elements with the old block number (or name) will be given this block name. No change of block ID is performed, unless multiple old blocks are given the same name, in which case they are all given the first old block number.
- old_block_idElements with this block number will be given the new_block_number or new_block_name. You must supply either old_block_id or old_block_name. You may supply a vector of old_block_id, in which case the new_block information must also be a vector.
C++ Type:std::vector
Options:
Description:Elements with this block number will be given the new_block_number or new_block_name. You must supply either old_block_id or old_block_name. You may supply a vector of old_block_id, in which case the new_block information must also be a vector.
- old_block_nameElements with this block name will be given the new_block_number or new_block_name. You must supply either old_block_id or old_block_name. You may supply a vector of old_block_name, in which case the new_block information must also be a vector.
C++ Type:std::vector
Options:
Description:Elements with this block name will be given the new_block_number or new_block_name. You must supply either old_block_id or old_block_name. You may supply a vector of old_block_name, in which case the new_block information must also be a vector.
Optional Parameters
- control_tagsAdds user-defined labels for accessing object parameters via control logic.
C++ Type:std::vector
Options:
Description:Adds user-defined labels for accessing object parameters via control logic.
- enableTrueSet the enabled status of the MooseObject.
Default:True
C++ Type:bool
Options:
Description:Set the enabled status of the MooseObject.
Advanced Parameters
Input Files
- modules/combined/test/tests/mortar_tm/2drz/frictionless_first/small.i
- modules/combined/test/tests/mortar_tm/2drz/ad_frictionless_first/finite_rr.i
- modules/porous_flow/test/tests/actions/basicthm_hm.i
- modules/porous_flow/examples/tutorial/03.i
- modules/heat_conduction/test/tests/radiation_transfer_action/radiative_transfer_no_action.i
- test/tests/meshgenerators/rename_block_generator/rename_block2.i
- modules/combined/test/tests/mortar_tm/2d/frictionless_first/small.i
- modules/combined/test/tests/mortar_tm/2drz/frictionless_first/finite_rr.i
- modules/combined/test/tests/mortar_tm/2d/frictionless_first/finite_rr.i
- modules/combined/test/tests/mortar_tm/2d/ad_frictionless_fir/finite_rr.i
- modules/combined/test/tests/mortar_tm/2drz/ad_frictionless_second/finite_rr.i
- modules/combined/test/tests/mortar_tm/2d/ad_frictionless_fir/small.i
- modules/porous_flow/examples/tutorial/06_KT.i
- modules/porous_flow/examples/tutorial/05.i
- modules/combined/test/tests/mortar_tm/2d/frictionless_first/finite.i
- test/tests/meshgenerators/rename_block_generator/rename_block1.i
- modules/combined/test/tests/mortar_tm/2drz/frictionless_first/finite.i
- modules/porous_flow/examples/tutorial/04.i
- modules/porous_flow/test/tests/actions/basicthm_th.i
- modules/combined/test/tests/mortar_tm/2drz/frictionless_first/finite_noaction.i
- modules/porous_flow/examples/tutorial/01.i
- modules/combined/test/tests/mortar_tm/2d/frictionless_second/finite.i
- modules/heat_conduction/test/tests/radiation_transfer_action/radiative_transfer_action.i
- modules/combined/test/tests/mortar_tm/2drz/frictionless_second/small.i
- modules/combined/test/tests/mortar_tm/2drz/ad_frictionless_first/small.i
- modules/combined/test/tests/mortar_tm/2d/ad_frictionless_sec/finite.i
- modules/porous_flow/examples/tutorial/08.i
- modules/porous_flow/examples/tutorial/11.i
- modules/porous_flow/examples/tutorial/06.i
- modules/combined/test/tests/mortar_tm/2d/ad_frictionless_fir/finite.i
- modules/heat_conduction/test/tests/gray_lambert_radiator/coupled_heat_conduction.i
- modules/porous_flow/test/tests/actions/basicthm_thm.i
- modules/porous_flow/test/tests/actions/basicthm_h.i
- modules/combined/test/tests/mortar_tm/2d/frictionless_first/finite_noaction.i
- modules/porous_flow/examples/tutorial/11_2D.i
- modules/porous_flow/examples/tutorial/00.i
- modules/porous_flow/examples/tutorial/05_tabulated.i
- modules/combined/test/tests/mortar_tm/2d/frictionless_second/small.i
- modules/combined/test/tests/mortar_tm/2d/frictionless_second/finite_rr.i
- modules/combined/test/tests/mortar_tm/2drz/frictionless_second/finite.i
- modules/combined/test/tests/mortar_tm/2drz/frictionless_second/finite_noaction.i
- modules/combined/test/tests/mortar_tm/2drz/ad_frictionless_second/finite.i
- modules/combined/test/tests/mortar_tm/2d/ad_frictionless_sec/finite_rr.i
- modules/combined/test/tests/mortar_tm/2drz/ad_frictionless_second/small.i
- modules/heat_conduction/test/tests/meshed_gap_thermal_contact/meshed_annulus_thermal_contact.i
- modules/combined/test/tests/mortar_tm/2drz/frictionless_second/finite_rr.i
- modules/porous_flow/examples/tutorial/00_2D.i
- modules/porous_flow/examples/tutorial/08_KT.i
- modules/combined/test/tests/mortar_tm/2drz/ad_frictionless_first/finite.i
- modules/porous_flow/examples/tutorial/10.i
- modules/porous_flow/examples/tutorial/07.i
- modules/combined/test/tests/mortar_tm/2d/frictionless_second/finite_noaction.i
- modules/combined/test/tests/mortar_tm/2d/ad_frictionless_sec/small.i
modules/combined/test/tests/mortar_tm/2drz/frictionless_first/small.i
E_block = 1e7
E_plank = 1e7
elem = QUAD4
order = FIRST
name = 'small'
[Problem]
coord_type = RZ
[]
[Mesh]
patch_size = 80
patch_update_strategy = auto
[./plank]
type = GeneratedMeshGenerator
dim = 2
xmin = 0
xmax = 0.6
ymin = -10
ymax = 10
nx = 2
ny = 67
elem_type = ${elem}
[../]
[./plank_sidesets]
type = RenameBoundaryGenerator
input = plank
old_boundary_id = '0 1 2 3'
new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
[../]
[./plank_id]
type = SubdomainIDGenerator
input = plank_sidesets
subdomain_id = 1
[../]
[./block]
type = GeneratedMeshGenerator
dim = 2
xmin = 0.61
xmax = 1.21
ymin = 9.2
ymax = 10.0
nx = 3
ny = 4
elem_type = ${elem}
[../]
[./block_id]
type = SubdomainIDGenerator
input = block
subdomain_id = 2
[../]
[./combined]
type = MeshCollectionGenerator
inputs = 'plank_id block_id'
[../]
[./block_rename]
type = RenameBlockGenerator
input = combined
old_block_id = '1 2'
new_block_name = 'plank block'
[../]
[./corner]
type = ExtraNodesetGenerator
input = block_rename
coord = '0 -10.0'
new_boundary = point
[../]
[./block_sidesets]
type = SideSetsFromPointsGenerator
input = corner
points = '0.9 9.2 0
1.21 9.5 0
0.9 10.0 0
0.61 9.5 0'
new_boundary = 'block_bottom block_right block_top block_left'
[../]
[]
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Variables]
[./disp_x]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[./disp_y]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[]
[Modules/TensorMechanics/Master]
[./block]
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'block'
[../]
[./plank]
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'plank'
eigenstrain_names = 'swell'
[../]
[]
[Contact]
[./frictionless]
mesh = block_sidesets
master = plank_right
slave = block_left
formulation = mortar
system = constraint
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
boundary = plank_left
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
boundary = plank_bottom
value = 0.0
[../]
[./right_x]
type = DirichletBC
variable = disp_x
boundary = block_right
value = 0
[../]
[./right_y]
type = FunctionDirichletBC
variable = disp_y
boundary = block_right
function = '-t'
[../]
[]
[Materials]
[./plank]
type = ComputeIsotropicElasticityTensor
block = 'plank'
poissons_ratio = 0.3
youngs_modulus = ${E_plank}
[../]
[./block]
type = ComputeIsotropicElasticityTensor
block = 'block'
poissons_ratio = 0.3
youngs_modulus = ${E_block}
[../]
[./stress]
type = ComputeLinearElasticStress
block = 'plank block'
[../]
[./swell]
type = ComputeEigenstrain
block = 'plank'
eigenstrain_name = swell
eigen_base = '1 0 0 0 0 0 0 0 0'
prefactor = swell_mat
[../]
[./swell_mat]
type = GenericFunctionMaterial
prop_names = 'swell_mat'
prop_values = '7e-2*(1-cos(4*t))'
block = 'plank'
[../]
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu 1e-5 NONZERO 1e-15'
end_time = 10
dt = 0.1
dtmin = 0.1
timestep_tolerance = 1e-6
line_search = 'contact'
[]
[Postprocessors]
[./nl_its]
type = NumNonlinearIterations
[../]
[./total_nl_its]
type = CumulativeValuePostprocessor
postprocessor = nl_its
[../]
[./l_its]
type = NumLinearIterations
[../]
[./total_l_its]
type = CumulativeValuePostprocessor
postprocessor = l_its
[../]
[./contact]
type = ContactDOFSetSize
variable = frictionless_normal_lm
subdomain = frictionless_slave_subdomain
[../]
[./avg_hydro]
type = ElementAverageValue
variable = hydrostatic_stress
block = 'block'
[../]
[./max_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
[../]
[./min_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
value_type = min
[../]
[./avg_vonmises]
type = ElementAverageValue
variable = vonmises_stress
block = 'block'
[../]
[./max_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
[../]
[./min_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
value_type = min
[../]
[]
[Outputs]
exodus = true
file_base = ${name}
[./comp]
type = CSV
show = 'contact'
[../]
[./out]
type = CSV
file_base = '${name}_out'
[../]
[]
[Debug]
show_var_residual_norms = true
[]
modules/combined/test/tests/mortar_tm/2drz/ad_frictionless_first/finite_rr.i
E_block = 1e7
E_plank = 1e7
elem = QUAD4
order = FIRST
name = 'finite_rr'
[Problem]
coord_type = RZ
[]
[Mesh]
patch_size = 80
patch_update_strategy = auto
[./plank]
type = GeneratedMeshGenerator
dim = 2
xmin = 0
xmax = 0.6
ymin = -10
ymax = 10
nx = 2
ny = 67
elem_type = ${elem}
[../]
[./plank_sidesets]
type = RenameBoundaryGenerator
input = plank
old_boundary_id = '0 1 2 3'
new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
[../]
[./plank_id]
type = SubdomainIDGenerator
input = plank_sidesets
subdomain_id = 1
[../]
[./block]
type = GeneratedMeshGenerator
dim = 2
xmin = 0.61
xmax = 1.21
ymin = 9.2
ymax = 10.0
nx = 3
ny = 4
elem_type = ${elem}
[../]
[./block_id]
type = SubdomainIDGenerator
input = block
subdomain_id = 2
[../]
[./combined]
type = MeshCollectionGenerator
inputs = 'plank_id block_id'
[../]
[./block_rename]
type = RenameBlockGenerator
input = combined
old_block_id = '1 2'
new_block_name = 'plank block'
[../]
[./block_sidesets]
type = SideSetsFromPointsGenerator
input = block_rename
points = '0.9 9.2 0
1.21 9.5 0
0.9 10.0 0
0.61 9.5 0'
new_boundary = 'block_bottom block_right block_top block_left'
[../]
[]
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Problem]
type = ReferenceResidualProblem
extra_tag_vectors = 'ref'
reference_vector = 'ref'
[]
[Variables]
[./disp_x]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[./disp_y]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[]
[Modules/TensorMechanics/Master]
[./block]
use_automatic_differentiation = true
strain = FINITE
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'block'
extra_vector_tags = 'ref'
[../]
[./plank]
use_automatic_differentiation = true
strain = FINITE
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'plank'
eigenstrain_names = 'swell'
extra_vector_tags = 'ref'
[../]
[]
[Contact]
[./frictionless]
mesh = block_sidesets
master = plank_right
slave = block_left
formulation = mortar
system = constraint
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
boundary = plank_left
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
boundary = plank_bottom
value = 0.0
[../]
[./right_x]
type = DirichletBC
variable = disp_x
boundary = block_right
value = 0
[../]
[./right_y]
type = ADFunctionDirichletBC
variable = disp_y
boundary = block_right
function = '-t'
[../]
[]
[Materials]
[./plank]
type = ComputeIsotropicElasticityTensor
block = 'plank'
poissons_ratio = 0.3
youngs_modulus = ${E_plank}
[../]
[./block]
type = ComputeIsotropicElasticityTensor
block = 'block'
poissons_ratio = 0.3
youngs_modulus = ${E_block}
[../]
[./stress]
type = ADComputeFiniteStrainElasticStress
block = 'plank block'
[../]
[./swell]
type = ADComputeEigenstrain
block = 'plank'
eigenstrain_name = swell
eigen_base = '1 0 0 0 0 0 0 0 0'
prefactor = swell_mat
[../]
[./swell_mat]
type = GenericFunctionMaterial
prop_names = 'swell_mat'
prop_values = '7e-2*(1-cos(4*t))'
block = 'plank'
[../]
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu 1e-5 NONZERO 1e-15'
end_time = 10
dt = 0.1
dtmin = 0.1
timestep_tolerance = 1e-6
line_search = 'contact'
nl_abs_tol = 1e-12
[]
[Postprocessors]
[./nl_its]
type = NumNonlinearIterations
[../]
[./total_nl_its]
type = CumulativeValuePostprocessor
postprocessor = nl_its
[../]
[./l_its]
type = NumLinearIterations
[../]
[./total_l_its]
type = CumulativeValuePostprocessor
postprocessor = l_its
[../]
[./contact]
type = ContactDOFSetSize
variable = frictionless_normal_lm
subdomain = frictionless_slave_subdomain
[../]
[./avg_hydro]
type = ElementAverageValue
variable = hydrostatic_stress
block = 'block'
[../]
[./max_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
[../]
[./min_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
value_type = min
[../]
[./avg_vonmises]
type = ElementAverageValue
variable = vonmises_stress
block = 'block'
[../]
[./max_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
[../]
[./min_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
value_type = min
[../]
[]
[Outputs]
exodus = true
file_base = ${name}
[./comp]
type = CSV
show = 'contact'
[../]
[./out]
type = CSV
file_base = '${name}_out'
[../]
[]
[Debug]
show_var_residual_norms = true
[]
modules/porous_flow/test/tests/actions/basicthm_hm.i
# PorousFlowBasicTHM action with coupling_type = HydroMechanicalGenerator
[Mesh]
[gen]
type = GeneratedMeshGenerator
dim = 2
nx = 10
ny = 3
xmax = 10
ymax = 3
[]
[./aquifer]
input = gen
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 1 0'
top_right = '10 2 0'
[../]
[./injection_area]
type = SideSetsAroundSubdomainGenerator
block = 1
new_boundary = 'injection_area'
normal = '-1 0 0'
input = 'aquifer'
[../]
[./outflow_area]
type = SideSetsAroundSubdomainGenerator
block = 1
new_boundary = 'outflow_area'
normal = '1 0 0'
input = 'injection_area'
[../]
[./rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caprock aquifer'
input = 'outflow_area'
[../]
[]
[GlobalParams]
PorousFlowDictator = dictator
displacements = 'disp_x disp_y'
biot_coefficient = 1.0
[]
[Variables]
[./porepressure]
initial_condition = 1e6
[../]
[./disp_x]
scaling = 1e-10
[../]
[./disp_y]
scaling = 1e-10
[../]
[]
[AuxVariables]
[./temperature]
initial_condition = 293
[../]
[]
[PorousFlowBasicTHM]
porepressure = porepressure
temperature = temperature
coupling_type = HydroMechanical
gravity = '0 0 0'
fp = simple_fluid
use_displaced_mesh = false
add_stress_aux = false
[]
[BCs]
[./constant_injection_porepressure]
type = DirichletBC
variable = porepressure
value = 1.5e6
boundary = injection_area
[../]
[./constant_outflow_porepressure]
type = PorousFlowPiecewiseLinearSink
variable = porepressure
boundary = outflow_area
pt_vals = '0 1e9'
multipliers = '0 1e9'
flux_function = 1e-6
PT_shift = 1e6
[../]
[./top_bottom]
type = DirichletBC
variable = disp_y
value = 0
boundary = 'top bottom'
[../]
[./right]
type = DirichletBC
variable = disp_x
value = 0
boundary = right
[../]
[]
[Modules]
[./FluidProperties]
[./simple_fluid]
type = SimpleFluidProperties
[../]
[../]
[]
[Materials]
[./porosity]
type = PorousFlowPorosity
porosity_zero = 0.1
[../]
[./biot_modulus]
type = PorousFlowConstantBiotModulus
solid_bulk_compliance = 2e-7
fluid_bulk_modulus = 1e7
[../]
[./permeability_aquifer]
type = PorousFlowPermeabilityConst
block = aquifer
permeability = '1e-13 0 0 0 1e-13 0 0 0 1e-13'
[../]
[./permeability_caprock]
type = PorousFlowPermeabilityConst
block = caprock
permeability = '1e-15 0 0 0 1e-15 0 0 0 1e-15'
[../]
[./elasticity_tensor]
type = ComputeIsotropicElasticityTensor
youngs_modulus = 5e9
poissons_ratio = 0.0
[../]
[./strain]
type = ComputeSmallStrain
[../]
[./stress]
type = ComputeLinearElasticStress
[../]
[]
[Preconditioning]
[./basic]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1e4
dt = 1e3
nl_abs_tol = 1e-14
nl_rel_tol = 1e-14
[]
[Outputs]
exodus = true
[]
modules/porous_flow/examples/tutorial/03.i
# Darcy flow with heat advection and conduction
[Mesh]
[annular]
type = AnnularMeshGenerator
nr = 10
rmin = 1.0
rmax = 10
growth_r = 1.4
nt = 4
dmin = 0
dmax = 90
[]
[./make3D]
type = MeshExtruderGenerator
extrusion_vector = '0 0 12'
num_layers = 3
bottom_sideset = 'bottom'
top_sideset = 'top'
input = annular
[../]
[./shift_down]
type = TransformGenerator
transform = TRANSLATE
vector_value = '0 0 -6'
input = make3D
[../]
[./aquifer]
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 0 -2'
top_right = '10 10 2'
input = shift_down
[../]
[./injection_area]
type = ParsedGenerateSideset
combinatorial_geometry = 'x*x+y*y<1.01'
included_subdomain_ids = 1
new_sideset_name = 'injection_area'
input = 'aquifer'
[../]
[./rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caps aquifer'
input = 'injection_area'
[../]
[]
[GlobalParams]
PorousFlowDictator = dictator
[]
[Variables]
[./porepressure]
[../]
[./temperature]
initial_condition = 293
scaling = 1E-8
[../]
[]
[PorousFlowBasicTHM]
porepressure = porepressure
temperature = temperature
coupling_type = ThermoHydro
gravity = '0 0 0'
fp = the_simple_fluid
[]
[BCs]
[./constant_injection_porepressure]
type = DirichletBC
variable = porepressure
value = 1E6
boundary = injection_area
[../]
[./constant_injection_temperature]
type = DirichletBC
variable = temperature
value = 313
boundary = injection_area
[../]
[]
[Modules]
[./FluidProperties]
[./the_simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 2E9
viscosity = 1.0E-3
density0 = 1000.0
thermal_expansion = 0.0002
cp = 4194
cv = 4186
porepressure_coefficient = 0
[../]
[../]
[]
[Materials]
[./porosity]
type = PorousFlowPorosity
porosity_zero = 0.1
[../]
[./biot_modulus]
type = PorousFlowConstantBiotModulus
biot_coefficient = 0.8
solid_bulk_compliance = 2E-7
fluid_bulk_modulus = 1E7
[../]
[./permeability_aquifer]
type = PorousFlowPermeabilityConst
block = aquifer
permeability = '1E-14 0 0 0 1E-14 0 0 0 1E-14'
[../]
[./permeability_caps]
type = PorousFlowPermeabilityConst
block = caps
permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-16'
[../]
[./thermal_expansion]
type = PorousFlowConstantThermalExpansionCoefficient
biot_coefficient = 0.8
drained_coefficient = 0.003
fluid_coefficient = 0.0002
[../]
[./rock_internal_energy]
type = PorousFlowMatrixInternalEnergy
density = 2500.0
specific_heat_capacity = 1200.0
[../]
[./thermal_conductivity]
type = PorousFlowThermalConductivityIdeal
dry_thermal_conductivity = '10 0 0 0 10 0 0 0 10'
block = 'caps aquifer'
[../]
[]
[Preconditioning]
active = basic
[./basic]
type = SMP
full = true
petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = ' asm lu NONZERO 2'
[../]
[./preferred_but_might_not_be_installed]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
[../]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1E6
dt = 1E5
nl_abs_tol = 1E-10
[]
[Outputs]
exodus = true
[]
modules/heat_conduction/test/tests/radiation_transfer_action/radiative_transfer_no_action.i
[Problem]
kernel_coverage_check = false
[]
[Mesh]
type = MeshGeneratorMesh
[./cmg]
type = CartesianMeshGenerator
dim = 2
dx = '1 1.3 1.9'
ix = '3 3 3'
dy = '2 1.2 0.9'
iy = '3 3 3'
subdomain_id = '0 1 0
4 5 2
0 3 0'
[../]
[./inner_bottom]
type = SideSetsBetweenSubdomainsGenerator
input = cmg
master_block = 1
paired_block = 5
new_boundary = 'inner_bottom'
[../]
[./inner_left]
type = SideSetsBetweenSubdomainsGenerator
input = inner_bottom
master_block = 4
paired_block = 5
new_boundary = 'inner_left'
[../]
[./inner_right]
type = SideSetsBetweenSubdomainsGenerator
input = inner_left
master_block = 2
paired_block = 5
new_boundary = 'inner_right'
[../]
[./inner_top]
type = SideSetsBetweenSubdomainsGenerator
input = inner_right
master_block = 3
paired_block = 5
new_boundary = 'inner_top'
[../]
[./rename]
type = RenameBlockGenerator
old_block_id = '1 2 3 4'
new_block_id = '0 0 0 0'
input = inner_top
[../]
[./split_inner_bottom]
type = PatchSidesetGenerator
sideset = 4
n_patches = 2
partitioner = centroid
centroid_partitioner_direction = x
input = rename
[../]
[./split_inner_left]
type = PatchSidesetGenerator
sideset = 5
n_patches = 2
partitioner = centroid
centroid_partitioner_direction = y
input = split_inner_bottom
[../]
[./split_inner_right]
type = PatchSidesetGenerator
sideset = 6
n_patches = 2
partitioner = centroid
centroid_partitioner_direction = y
input = split_inner_left
[../]
[./split_inner_top]
type = PatchSidesetGenerator
sideset = 7
n_patches = 3
partitioner = centroid
centroid_partitioner_direction = x
input = split_inner_right
[../]
[]
[Variables]
[./temperature]
block = 0
[../]
[]
[Kernels]
[./heat_conduction]
type = HeatConduction
variable = temperature
block = 0
diffusion_coefficient = 5
[../]
[]
[UserObjects]
[./gray_lambert]
type = ViewFactorObjectSurfaceRadiation
boundary = 'inner_bottom_0 inner_bottom_1
inner_left_0 inner_left_1
inner_right_0 inner_right_1
inner_top_0 inner_top_1 inner_top_2'
fixed_temperature_boundary = 'inner_bottom_0 inner_bottom_1'
fixed_boundary_temperatures = '1200 1200'
adiabatic_boundary = 'inner_top_0 inner_top_1 inner_top_2'
emissivity = '0.9 0.9
0.8 0.8
0.4 0.4
1 1 1'
temperature = temperature
view_factor_object_name = view_factor
execute_on = 'LINEAR TIMESTEP_END'
[../]
[./view_factor]
type = UnobstructedPlanarViewFactor
boundary = 'inner_bottom_0 inner_bottom_1
inner_left_0 inner_left_1
inner_right_0 inner_right_1
inner_top_0 inner_top_1 inner_top_2'
normalize_view_factor = true
execute_on = 'INITIAL'
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = temperature
boundary = left
value = 600
[../]
[./right]
type = DirichletBC
variable = temperature
boundary = right
value = 300
[../]
[./radiation]
type = GrayLambertNeumannBC
variable = temperature
surface_radiation_object_name = gray_lambert
boundary = 'inner_bottom_0 inner_bottom_1
inner_left_0 inner_left_1
inner_right_0 inner_right_1
inner_top_0 inner_top_1 inner_top_2'
[../]
[]
[Postprocessors]
[./average_T_inner_right]
type = SideAverageValue
variable = temperature
boundary = inner_right
[../]
[]
[Executioner]
type = Steady
[]
[Outputs]
exodus = true
[]
test/tests/meshgenerators/rename_block_generator/rename_block2.i
[Mesh]
[./gmg]
type = GeneratedMeshGenerator
dim = 3
nx = 2
ny = 2
nz = 2
xmin = -1
xmax = 1
ymin = -1
ymax = 1
zmin = -1
zmax = 1
[]
[./sbb1]
type = SubdomainBoundingBoxGenerator
input = gmg
block_id = 1
bottom_left = '-1 -1 -1'
top_right = '0 0 0'
[]
[./sbb2]
type = SubdomainBoundingBoxGenerator
input = sbb1
block_id = 2
bottom_left = '0 -1 -1'
top_right = '1 0 0'
[]
[./sbb3]
type = SubdomainBoundingBoxGenerator
input = sbb2
block_id = 3
bottom_left = '-1 0 -1'
top_right = '0 1 0'
[]
[./sbb4]
type = SubdomainBoundingBoxGenerator
input = sbb3
block_id = 4
bottom_left = '0 0 -1'
top_right = '1 1 0'
[]
[./sbb5]
type = SubdomainBoundingBoxGenerator
input = sbb4
block_id = 5
bottom_left = '-1 -1 0'
top_right = '0 0 1'
[]
[./sbb6]
type = SubdomainBoundingBoxGenerator
input = sbb5
block_id = 6
bottom_left = '0 -1 0'
top_right = '1 0 1'
[]
[./sbb7]
type = SubdomainBoundingBoxGenerator
input = sbb6
block_id = 7
bottom_left = '-1 0 0'
top_right = '0 1 1'
[]
[./sbb8]
type = SubdomainBoundingBoxGenerator
input = sbb7
block_id = 8
bottom_left = '0 0 0'
top_right = '1 1 1'
[]
[./re0]
type = RenameBlockGenerator
input = sbb8
old_block_id = '12345 1 2 3 4'
new_block_name = 'nill one two three four'
[]
[./re1]
type = RenameBlockGenerator
old_block_id = '12345 1 2'
new_block_name = 'nill one_and_two one_and_two'
input = re0
[]
[./does_nothing_there_is_no_block_2_now]
type = RenameBlockGenerator
old_block_id = 2
new_block_id = 9
input = re1
[]
[./re2]
type = RenameBlockGenerator
old_block_id = '1 2 3 4 5 8'
new_block_id = '1 12345 4 4 4 7' # note this makes block_id=4 have name "three", since the first occurance of new_block_id=4 has name "three"
input = does_nothing_there_is_no_block_2_now
[../]
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./bottom]
type = DirichletBC
variable = u
boundary = bottom
value = 0
[../]
[./top]
type = DirichletBC
variable = u
boundary = top
value = 0
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
modules/combined/test/tests/mortar_tm/2d/frictionless_first/small.i
E_block = 1e7
E_plank = 1e7
elem = QUAD4
order = FIRST
name = 'small'
[Mesh]
patch_size = 80
patch_update_strategy = auto
[./plank]
type = GeneratedMeshGenerator
dim = 2
xmin = -0.3
xmax = 0.3
ymin = -10
ymax = 10
nx = 2
ny = 67
elem_type = ${elem}
[../]
[./plank_sidesets]
type = RenameBoundaryGenerator
input = plank
old_boundary_id = '0 1 2 3'
new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
[../]
[./plank_id]
type = SubdomainIDGenerator
input = plank_sidesets
subdomain_id = 1
[../]
[./block]
type = GeneratedMeshGenerator
dim = 2
xmin = 0.31
xmax = 0.91
ymin = 7.7
ymax = 8.5
nx = 3
ny = 4
elem_type = ${elem}
[../]
[./block_id]
type = SubdomainIDGenerator
input = block
subdomain_id = 2
[../]
[./combined]
type = MeshCollectionGenerator
inputs = 'plank_id block_id'
[../]
[./block_rename]
type = RenameBlockGenerator
input = combined
old_block_id = '1 2'
new_block_name = 'plank block'
[../]
[./block_sidesets]
type = SideSetsFromPointsGenerator
input = block_rename
points = '0.6 7.7 0
0.91 8.0 0
0.6 8.5 0
0.31 8.0 0'
new_boundary = 'block_bottom block_right block_top block_left'
[../]
[]
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Variables]
[./disp_x]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[./disp_y]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[]
[Modules/TensorMechanics/Master]
[./action]
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'plank block'
[../]
[]
[Contact]
[./frictionless]
mesh = block_sidesets
master = plank_right
slave = block_left
formulation = mortar
system = constraint
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
boundary = plank_left
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
boundary = plank_bottom
value = 0.0
[../]
[./right_x]
type = FunctionDirichletBC
variable = disp_x
boundary = block_right
function = '-0.04*sin(4*(t+1.5))+0.02'
[../]
[./right_y]
type = FunctionDirichletBC
variable = disp_y
boundary = block_right
function = '-t'
[../]
[]
[Materials]
[./plank]
type = ComputeIsotropicElasticityTensor
block = 'plank'
poissons_ratio = 0.3
youngs_modulus = ${E_plank}
[../]
[./block]
type = ComputeIsotropicElasticityTensor
block = 'block'
poissons_ratio = 0.3
youngs_modulus = ${E_block}
[../]
[./stress]
type = ComputeLinearElasticStress
block = 'plank block'
[../]
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu 1e-5 NONZERO 1e-15'
end_time = 13.5
dt = 0.1
dtmin = 0.1
timestep_tolerance = 1e-6
line_search = 'contact'
[]
[Postprocessors]
[./nl_its]
type = NumNonlinearIterations
[../]
[./total_nl_its]
type = CumulativeValuePostprocessor
postprocessor = nl_its
[../]
[./l_its]
type = NumLinearIterations
[../]
[./total_l_its]
type = CumulativeValuePostprocessor
postprocessor = l_its
[../]
[./contact]
type = ContactDOFSetSize
variable = frictionless_normal_lm
subdomain = frictionless_slave_subdomain
[../]
[./avg_hydro]
type = ElementAverageValue
variable = hydrostatic_stress
block = 'block'
[../]
[./max_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
[../]
[./min_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
value_type = min
[../]
[./avg_vonmises]
type = ElementAverageValue
variable = vonmises_stress
block = 'block'
[../]
[./max_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
[../]
[./min_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
value_type = min
[../]
[]
[Outputs]
exodus = true
file_base = ${name}
[./comp]
type = CSV
show = 'contact'
[../]
[./out]
type = CSV
file_base = '${name}_out'
[../]
[]
[Debug]
show_var_residual_norms = true
[]
modules/combined/test/tests/mortar_tm/2drz/frictionless_first/finite_rr.i
E_block = 1e7
E_plank = 1e7
elem = QUAD4
order = FIRST
name = 'finite_rr'
[Problem]
coord_type = RZ
[]
[Mesh]
patch_size = 80
patch_update_strategy = auto
[./plank]
type = GeneratedMeshGenerator
dim = 2
xmin = 0
xmax = 0.6
ymin = -10
ymax = 10
nx = 2
ny = 67
elem_type = ${elem}
[../]
[./plank_sidesets]
type = RenameBoundaryGenerator
input = plank
old_boundary_id = '0 1 2 3'
new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
[../]
[./plank_id]
type = SubdomainIDGenerator
input = plank_sidesets
subdomain_id = 1
[../]
[./block]
type = GeneratedMeshGenerator
dim = 2
xmin = 0.61
xmax = 1.21
ymin = 9.2
ymax = 10.0
nx = 3
ny = 4
elem_type = ${elem}
[../]
[./block_id]
type = SubdomainIDGenerator
input = block
subdomain_id = 2
[../]
[./combined]
type = MeshCollectionGenerator
inputs = 'plank_id block_id'
[../]
[./block_rename]
type = RenameBlockGenerator
input = combined
old_block_id = '1 2'
new_block_name = 'plank block'
[../]
[./block_sidesets]
type = SideSetsFromPointsGenerator
input = block_rename
points = '0.9 9.2 0
1.21 9.5 0
0.9 10.0 0
0.61 9.5 0'
new_boundary = 'block_bottom block_right block_top block_left'
[../]
[]
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Problem]
type = ReferenceResidualProblem
extra_tag_vectors = 'ref'
reference_vector = 'ref'
[]
[Variables]
[./disp_x]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[./disp_y]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[]
[Modules/TensorMechanics/Master]
[./block]
strain = FINITE
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'block'
extra_vector_tags = 'ref'
[../]
[./plank]
strain = FINITE
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'plank'
eigenstrain_names = 'swell'
extra_vector_tags = 'ref'
[../]
[]
[Contact]
[./frictionless]
mesh = block_sidesets
master = plank_right
slave = block_left
formulation = mortar
system = constraint
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
boundary = plank_left
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
boundary = plank_bottom
value = 0.0
[../]
[./right_x]
type = DirichletBC
variable = disp_x
boundary = block_right
value = 0
[../]
[./right_y]
type = FunctionDirichletBC
variable = disp_y
boundary = block_right
function = '-t'
[../]
[]
[Materials]
[./plank]
type = ComputeIsotropicElasticityTensor
block = 'plank'
poissons_ratio = 0.3
youngs_modulus = ${E_plank}
[../]
[./block]
type = ComputeIsotropicElasticityTensor
block = 'block'
poissons_ratio = 0.3
youngs_modulus = ${E_block}
[../]
[./stress]
type = ComputeFiniteStrainElasticStress
block = 'plank block'
[../]
[./swell]
type = ComputeEigenstrain
block = 'plank'
eigenstrain_name = swell
eigen_base = '1 0 0 0 0 0 0 0 0'
prefactor = swell_mat
[../]
[./swell_mat]
type = GenericFunctionMaterial
prop_names = 'swell_mat'
prop_values = '7e-2*(1-cos(4*t))'
block = 'plank'
[../]
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu 1e-5 NONZERO 1e-15'
end_time = 10
dt = 0.1
dtmin = 0.1
timestep_tolerance = 1e-6
line_search = 'contact'
nl_abs_tol = 1e-12
[]
[Postprocessors]
[./nl_its]
type = NumNonlinearIterations
[../]
[./total_nl_its]
type = CumulativeValuePostprocessor
postprocessor = nl_its
[../]
[./l_its]
type = NumLinearIterations
[../]
[./total_l_its]
type = CumulativeValuePostprocessor
postprocessor = l_its
[../]
[./contact]
type = ContactDOFSetSize
variable = frictionless_normal_lm
subdomain = frictionless_slave_subdomain
[../]
[./avg_hydro]
type = ElementAverageValue
variable = hydrostatic_stress
block = 'block'
[../]
[./max_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
[../]
[./min_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
value_type = min
[../]
[./avg_vonmises]
type = ElementAverageValue
variable = vonmises_stress
block = 'block'
[../]
[./max_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
[../]
[./min_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
value_type = min
[../]
[]
[Outputs]
exodus = true
file_base = ${name}
[./comp]
type = CSV
show = 'contact'
[../]
[./out]
type = CSV
file_base = '${name}_out'
[../]
[]
[Debug]
show_var_residual_norms = true
[]
modules/combined/test/tests/mortar_tm/2d/frictionless_first/finite_rr.i
E_block = 1e7
E_plank = 1e7
elem = QUAD4
order = FIRST
name = 'finite_rr'
[Mesh]
patch_size = 80
patch_update_strategy = auto
[./plank]
type = GeneratedMeshGenerator
dim = 2
xmin = -0.3
xmax = 0.3
ymin = -10
ymax = 10
nx = 2
ny = 67
elem_type = ${elem}
[../]
[./plank_sidesets]
type = RenameBoundaryGenerator
input = plank
old_boundary_id = '0 1 2 3'
new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
[../]
[./plank_id]
type = SubdomainIDGenerator
input = plank_sidesets
subdomain_id = 1
[../]
[./block]
type = GeneratedMeshGenerator
dim = 2
xmin = 0.31
xmax = 0.91
ymin = 7.7
ymax = 8.5
nx = 3
ny = 4
elem_type = ${elem}
[../]
[./block_id]
type = SubdomainIDGenerator
input = block
subdomain_id = 2
[../]
[./combined]
type = MeshCollectionGenerator
inputs = 'plank_id block_id'
[../]
[./block_rename]
type = RenameBlockGenerator
input = combined
old_block_id = '1 2'
new_block_name = 'plank block'
[../]
[./block_sidesets]
type = SideSetsFromPointsGenerator
input = block_rename
points = '0.6 7.7 0
0.91 8.0 0
0.6 8.5 0
0.31 8.0 0'
new_boundary = 'block_bottom block_right block_top block_left'
[../]
[]
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Problem]
type = ReferenceResidualProblem
extra_tag_vectors = 'ref'
reference_vector = 'ref'
[]
[Variables]
[./disp_x]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[./disp_y]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[]
[Modules/TensorMechanics/Master]
[./action]
strain = FINITE
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'plank block'
extra_vector_tags = 'ref'
[../]
[]
[Contact]
[./frictionless]
mesh = block_sidesets
master = plank_right
slave = block_left
formulation = mortar
system = constraint
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
boundary = plank_left
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
boundary = plank_bottom
value = 0.0
[../]
[./right_x]
type = FunctionDirichletBC
variable = disp_x
boundary = block_right
function = '-0.04*sin(4*(t+1.5))+0.02'
[../]
[./right_y]
type = FunctionDirichletBC
variable = disp_y
boundary = block_right
function = '-t'
[../]
[]
[Materials]
[./plank]
type = ComputeIsotropicElasticityTensor
block = 'plank'
poissons_ratio = 0.3
youngs_modulus = ${E_plank}
[../]
[./block]
type = ComputeIsotropicElasticityTensor
block = 'block'
poissons_ratio = 0.3
youngs_modulus = ${E_block}
[../]
[./stress]
type = ComputeFiniteStrainElasticStress
block = 'plank block'
[../]
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu 1e-5 NONZERO 1e-15'
end_time = 13.5
dt = 0.1
dtmin = 0.1
timestep_tolerance = 1e-6
line_search = 'contact'
nl_abs_tol = 1e-7
[]
[Postprocessors]
[./nl_its]
type = NumNonlinearIterations
[../]
[./total_nl_its]
type = CumulativeValuePostprocessor
postprocessor = nl_its
[../]
[./l_its]
type = NumLinearIterations
[../]
[./total_l_its]
type = CumulativeValuePostprocessor
postprocessor = l_its
[../]
[./contact]
type = ContactDOFSetSize
variable = frictionless_normal_lm
subdomain = frictionless_slave_subdomain
[../]
[./avg_hydro]
type = ElementAverageValue
variable = hydrostatic_stress
block = 'block'
[../]
[./max_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
[../]
[./min_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
value_type = min
[../]
[./avg_vonmises]
type = ElementAverageValue
variable = vonmises_stress
block = 'block'
[../]
[./max_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
[../]
[./min_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
value_type = min
[../]
[]
[Outputs]
exodus = true
file_base = ${name}
[./comp]
type = CSV
show = 'contact'
[../]
[./out]
type = CSV
file_base = '${name}_out'
[../]
[]
[Debug]
show_var_residual_norms = true
[]
modules/combined/test/tests/mortar_tm/2d/ad_frictionless_fir/finite_rr.i
E_block = 1e7
E_plank = 1e7
elem = QUAD4
order = FIRST
name = 'finite_rr'
[Mesh]
patch_size = 80
patch_update_strategy = auto
[./plank]
type = GeneratedMeshGenerator
dim = 2
xmin = -0.3
xmax = 0.3
ymin = -10
ymax = 10
nx = 2
ny = 67
elem_type = ${elem}
[../]
[./plank_sidesets]
type = RenameBoundaryGenerator
input = plank
old_boundary_id = '0 1 2 3'
new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
[../]
[./plank_id]
type = SubdomainIDGenerator
input = plank_sidesets
subdomain_id = 1
[../]
[./block]
type = GeneratedMeshGenerator
dim = 2
xmin = 0.31
xmax = 0.91
ymin = 7.7
ymax = 8.5
nx = 3
ny = 4
elem_type = ${elem}
[../]
[./block_id]
type = SubdomainIDGenerator
input = block
subdomain_id = 2
[../]
[./combined]
type = MeshCollectionGenerator
inputs = 'plank_id block_id'
[../]
[./block_rename]
type = RenameBlockGenerator
input = combined
old_block_id = '1 2'
new_block_name = 'plank block'
[../]
[./block_sidesets]
type = SideSetsFromPointsGenerator
input = block_rename
points = '0.6 7.7 0
0.91 8.0 0
0.6 8.5 0
0.31 8.0 0'
new_boundary = 'block_bottom block_right block_top block_left'
[../]
[]
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Problem]
type = ReferenceResidualProblem
extra_tag_vectors = 'ref'
reference_vector = 'ref'
[]
[Variables]
[./disp_x]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[./disp_y]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[]
[Modules/TensorMechanics/Master]
[./action]
strain = FINITE
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'plank block'
extra_vector_tags = 'ref'
use_automatic_differentiation = true
[../]
[]
[Contact]
[./frictionless]
mesh = block_sidesets
master = plank_right
slave = block_left
formulation = mortar
system = constraint
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
boundary = plank_left
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
boundary = plank_bottom
value = 0.0
[../]
[./right_x]
type = ADFunctionDirichletBC
variable = disp_x
boundary = block_right
function = '-0.04*sin(4*(t+1.5))+0.02'
[../]
[./right_y]
type = ADFunctionDirichletBC
variable = disp_y
boundary = block_right
function = '-t'
[../]
[]
[Materials]
[./plank]
type = ComputeIsotropicElasticityTensor
block = 'plank'
poissons_ratio = 0.3
youngs_modulus = ${E_plank}
[../]
[./block]
type = ComputeIsotropicElasticityTensor
block = 'block'
poissons_ratio = 0.3
youngs_modulus = ${E_block}
[../]
[./stress]
type = ADComputeFiniteStrainElasticStress
block = 'plank block'
[../]
[]
[Executioner]
type = Transient
solve_type = 'NEWTON'
petsc_options = '-snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu 1e-5 NONZERO 1e-15'
end_time = 13.5
dt = 0.1
dtmin = 0.1
timestep_tolerance = 1e-6
line_search = 'contact'
nl_abs_tol = 1e-7
[]
[Postprocessors]
[./nl_its]
type = NumNonlinearIterations
[../]
[./total_nl_its]
type = CumulativeValuePostprocessor
postprocessor = nl_its
[../]
[./l_its]
type = NumLinearIterations
[../]
[./total_l_its]
type = CumulativeValuePostprocessor
postprocessor = l_its
[../]
[./contact]
type = ContactDOFSetSize
variable = frictionless_normal_lm
subdomain = frictionless_slave_subdomain
[../]
[./avg_hydro]
type = ElementAverageValue
variable = hydrostatic_stress
block = 'block'
[../]
[./max_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
[../]
[./min_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
value_type = min
[../]
[./avg_vonmises]
type = ElementAverageValue
variable = vonmises_stress
block = 'block'
[../]
[./max_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
[../]
[./min_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
value_type = min
[../]
[]
[Outputs]
exodus = true
file_base = ${name}
[./comp]
type = CSV
show = 'contact'
[../]
[./out]
type = CSV
file_base = '${name}_out'
[../]
[]
[Debug]
show_var_residual_norms = true
[]
modules/combined/test/tests/mortar_tm/2drz/ad_frictionless_second/finite_rr.i
E_block = 1e7
E_plank = 1e7
elem = QUAD9
order = SECOND
name = 'finite_rr'
[Problem]
coord_type = RZ
[]
[Mesh]
patch_size = 80
patch_update_strategy = auto
[./plank]
type = GeneratedMeshGenerator
dim = 2
xmin = 0
xmax = 0.6
ymin = -10
ymax = 10
nx = 2
ny = 67
elem_type = ${elem}
[../]
[./plank_sidesets]
type = RenameBoundaryGenerator
input = plank
old_boundary_id = '0 1 2 3'
new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
[../]
[./plank_id]
type = SubdomainIDGenerator
input = plank_sidesets
subdomain_id = 1
[../]
[./block]
type = GeneratedMeshGenerator
dim = 2
xmin = 0.61
xmax = 1.21
ymin = 9.2
ymax = 10.0
nx = 3
ny = 4
elem_type = ${elem}
[../]
[./block_id]
type = SubdomainIDGenerator
input = block
subdomain_id = 2
[../]
[./combined]
type = MeshCollectionGenerator
inputs = 'plank_id block_id'
[../]
[./block_rename]
type = RenameBlockGenerator
input = combined
old_block_id = '1 2'
new_block_name = 'plank block'
[../]
[./block_sidesets]
type = SideSetsFromPointsGenerator
input = block_rename
points = '0.9 9.2 0
1.21 9.5 0
0.9 10.0 0
0.61 9.5 0'
new_boundary = 'block_bottom block_right block_top block_left'
[../]
[]
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Problem]
type = ReferenceResidualProblem
extra_tag_vectors = 'ref'
reference_vector = 'ref'
[]
[Variables]
[./disp_x]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[./disp_y]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[]
[Modules/TensorMechanics/Master]
[./block]
use_automatic_differentiation = true
strain = FINITE
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'block'
extra_vector_tags = 'ref'
[../]
[./plank]
use_automatic_differentiation = true
strain = FINITE
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'plank'
eigenstrain_names = 'swell'
extra_vector_tags = 'ref'
[../]
[]
[Contact]
[./frictionless]
mesh = block_sidesets
master = plank_right
slave = block_left
formulation = mortar
system = constraint
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
preset = false
boundary = plank_left
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
preset = false
boundary = plank_bottom
value = 0.0
[../]
[./right_x]
type = DirichletBC
variable = disp_x
preset = false
boundary = block_right
value = 0
[../]
[./right_y]
type = ADFunctionDirichletBC
variable = disp_y
preset = false
boundary = block_right
function = '-t'
[../]
[]
[Materials]
[./plank]
type = ComputeIsotropicElasticityTensor
block = 'plank'
poissons_ratio = 0.3
youngs_modulus = ${E_plank}
[../]
[./block]
type = ComputeIsotropicElasticityTensor
block = 'block'
poissons_ratio = 0.3
youngs_modulus = ${E_block}
[../]
[./stress]
type = ADComputeFiniteStrainElasticStress
block = 'plank block'
[../]
[./swell]
type = ADComputeEigenstrain
block = 'plank'
eigenstrain_name = swell
eigen_base = '1 0 0 0 0 0 0 0 0'
prefactor = swell_mat
[../]
[./swell_mat]
type = GenericFunctionMaterial
prop_names = 'swell_mat'
prop_values = '7e-2*(1-cos(4*t))'
block = 'plank'
[../]
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu 1e-5 NONZERO 1e-15'
end_time = 10
dt = 0.1
dtmin = 0.1
timestep_tolerance = 1e-6
line_search = 'contact'
nl_abs_tol = 1e-12
[]
[Postprocessors]
[./nl_its]
type = NumNonlinearIterations
[../]
[./total_nl_its]
type = CumulativeValuePostprocessor
postprocessor = nl_its
[../]
[./l_its]
type = NumLinearIterations
[../]
[./total_l_its]
type = CumulativeValuePostprocessor
postprocessor = l_its
[../]
[./contact]
type = ContactDOFSetSize
variable = frictionless_normal_lm
subdomain = frictionless_slave_subdomain
[../]
[./avg_hydro]
type = ElementAverageValue
variable = hydrostatic_stress
block = 'block'
[../]
[./max_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
[../]
[./min_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
value_type = min
[../]
[./avg_vonmises]
type = ElementAverageValue
variable = vonmises_stress
block = 'block'
[../]
[./max_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
[../]
[./min_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
value_type = min
[../]
[]
[Outputs]
exodus = true
file_base = ${name}
[./comp]
type = CSV
show = 'contact'
[../]
[./out]
type = CSV
file_base = '${name}_out'
[../]
[]
[Debug]
show_var_residual_norms = true
[]
modules/combined/test/tests/mortar_tm/2d/ad_frictionless_fir/small.i
E_block = 1e7
E_plank = 1e7
elem = QUAD4
order = FIRST
name = 'small'
[Mesh]
patch_size = 80
patch_update_strategy = auto
[./plank]
type = GeneratedMeshGenerator
dim = 2
xmin = -0.3
xmax = 0.3
ymin = -10
ymax = 10
nx = 2
ny = 67
elem_type = ${elem}
[../]
[./plank_sidesets]
type = RenameBoundaryGenerator
input = plank
old_boundary_id = '0 1 2 3'
new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
[../]
[./plank_id]
type = SubdomainIDGenerator
input = plank_sidesets
subdomain_id = 1
[../]
[./block]
type = GeneratedMeshGenerator
dim = 2
xmin = 0.31
xmax = 0.91
ymin = 7.7
ymax = 8.5
nx = 3
ny = 4
elem_type = ${elem}
[../]
[./block_id]
type = SubdomainIDGenerator
input = block
subdomain_id = 2
[../]
[./combined]
type = MeshCollectionGenerator
inputs = 'plank_id block_id'
[../]
[./block_rename]
type = RenameBlockGenerator
input = combined
old_block_id = '1 2'
new_block_name = 'plank block'
[../]
[./block_sidesets]
type = SideSetsFromPointsGenerator
input = block_rename
points = '0.6 7.7 0
0.91 8.0 0
0.6 8.5 0
0.31 8.0 0'
new_boundary = 'block_bottom block_right block_top block_left'
[../]
[]
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Variables]
[./disp_x]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[./disp_y]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[]
[Modules/TensorMechanics/Master]
[./action]
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'plank block'
use_automatic_differentiation = true
[../]
[]
[Contact]
[./frictionless]
mesh = block_sidesets
master = plank_right
slave = block_left
formulation = mortar
system = constraint
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
boundary = plank_left
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
boundary = plank_bottom
value = 0.0
[../]
[./right_x]
type = ADFunctionDirichletBC
variable = disp_x
boundary = block_right
function = '-0.04*sin(4*(t+1.5))+0.02'
[../]
[./right_y]
type = ADFunctionDirichletBC
variable = disp_y
boundary = block_right
function = '-t'
[../]
[]
[Materials]
[./plank]
type = ComputeIsotropicElasticityTensor
block = 'plank'
poissons_ratio = 0.3
youngs_modulus = ${E_plank}
[../]
[./block]
type = ComputeIsotropicElasticityTensor
block = 'block'
poissons_ratio = 0.3
youngs_modulus = ${E_block}
[../]
[./stress]
type = ADComputeLinearElasticStress
block = 'plank block'
[../]
[]
[Executioner]
type = Transient
solve_type = 'NEWTON'
petsc_options = '-snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu 1e-5 NONZERO 1e-15'
end_time = 13.5
dt = 0.1
dtmin = 0.1
timestep_tolerance = 1e-6
line_search = 'contact'
[]
[Postprocessors]
[./nl_its]
type = NumNonlinearIterations
[../]
[./total_nl_its]
type = CumulativeValuePostprocessor
postprocessor = nl_its
[../]
[./l_its]
type = NumLinearIterations
[../]
[./total_l_its]
type = CumulativeValuePostprocessor
postprocessor = l_its
[../]
[./contact]
type = ContactDOFSetSize
variable = frictionless_normal_lm
subdomain = frictionless_slave_subdomain
[../]
[./avg_hydro]
type = ElementAverageValue
variable = hydrostatic_stress
block = 'block'
[../]
[./max_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
[../]
[./min_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
value_type = min
[../]
[./avg_vonmises]
type = ElementAverageValue
variable = vonmises_stress
block = 'block'
[../]
[./max_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
[../]
[./min_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
value_type = min
[../]
[]
[Outputs]
exodus = true
file_base = ${name}
[./comp]
type = CSV
show = 'contact'
[../]
[./out]
type = CSV
file_base = '${name}_out'
[../]
[]
[Debug]
show_var_residual_norms = true
[]
modules/porous_flow/examples/tutorial/06_KT.i
# Darcy flow with a tracer
[Mesh]
[annular]
type = AnnularMeshGenerator
nr = 10
rmin = 1.0
rmax = 10
growth_r = 1.4
nt = 4
dmin = 0
dmax = 90
[]
[./make3D]
type = MeshExtruderGenerator
extrusion_vector = '0 0 12'
num_layers = 3
bottom_sideset = 'bottom'
top_sideset = 'top'
input = annular
[../]
[./shift_down]
type = TransformGenerator
transform = TRANSLATE
vector_value = '0 0 -6'
input = make3D
[../]
[./aquifer]
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 0 -2'
top_right = '10 10 2'
input = shift_down
[../]
[./injection_area]
type = ParsedGenerateSideset
combinatorial_geometry = 'x*x+y*y<1.01'
included_subdomain_ids = 1
new_sideset_name = 'injection_area'
input = 'aquifer'
[../]
[./rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caps aquifer'
input = 'injection_area'
[../]
[]
[GlobalParams]
PorousFlowDictator = dictator
[]
[Variables]
[./porepressure]
[../]
[./tracer_concentration]
[../]
[]
[ICs]
[./tracer_concentration]
type = FunctionIC
function = '0.5*if(x*x+y*y<1.01,1,0)'
variable = tracer_concentration
[../]
[]
[PorousFlowFullySaturated]
porepressure = porepressure
coupling_type = Hydro
gravity = '0 0 0'
fp = the_simple_fluid
mass_fraction_vars = tracer_concentration
stabilization = KT
flux_limiter_type = superbee
[]
[BCs]
[./constant_injection_porepressure]
type = DirichletBC
variable = porepressure
value = 1E6
boundary = injection_area
[../]
[./constant_outer_porepressure]
type = DirichletBC
variable = porepressure
value = 0
boundary = rmax
[../]
[./injected_tracer]
type = DirichletBC
variable = tracer_concentration
value = 0.5
boundary = injection_area
[../]
[]
[Modules]
[./FluidProperties]
[./the_simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 2E9
viscosity = 1.0E-3
density0 = 1000.0
[../]
[../]
[]
[Materials]
[./porosity]
type = PorousFlowPorosity
porosity_zero = 0.1
[../]
[./permeability_aquifer]
type = PorousFlowPermeabilityConst
block = aquifer
permeability = '1E-14 0 0 0 1E-14 0 0 0 1E-14'
[../]
[./permeability_caps]
type = PorousFlowPermeabilityConst
block = caps
permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-16'
[../]
[]
[Preconditioning]
active = basic
[./basic]
type = SMP
full = true
petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = ' asm lu NONZERO 2'
[../]
[./preferred_but_might_not_be_installed]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
[../]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1E6
dt = 1E5
nl_rel_tol = 1E-14
[]
[Outputs]
exodus = true
[]
modules/porous_flow/examples/tutorial/05.i
# Darcy flow with heat advection and conduction, using Water97 properties
[Mesh]
[annular]
type = AnnularMeshGenerator
nr = 10
rmin = 1.0
rmax = 10
growth_r = 1.4
nt = 4
dmin = 0
dmax = 90
[]
[./make3D]
type = MeshExtruderGenerator
extrusion_vector = '0 0 12'
num_layers = 3
bottom_sideset = 'bottom'
top_sideset = 'top'
input = annular
[../]
[./shift_down]
type = TransformGenerator
transform = TRANSLATE
vector_value = '0 0 -6'
input = make3D
[../]
[./aquifer]
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 0 -2'
top_right = '10 10 2'
input = shift_down
[../]
[./injection_area]
type = ParsedGenerateSideset
combinatorial_geometry = 'x*x+y*y<1.01'
included_subdomain_ids = 1
new_sideset_name = 'injection_area'
input = 'aquifer'
[../]
[./rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caps aquifer'
input = 'injection_area'
[../]
[]
[GlobalParams]
PorousFlowDictator = dictator
[]
[Variables]
[./porepressure]
initial_condition = 1E6
[../]
[./temperature]
initial_condition = 313
scaling = 1E-8
[../]
[]
[PorousFlowBasicTHM]
porepressure = porepressure
temperature = temperature
coupling_type = ThermoHydro
gravity = '0 0 0'
fp = the_simple_fluid
[]
[BCs]
[./constant_injection_porepressure]
type = DirichletBC
variable = porepressure
value = 2E6
boundary = injection_area
[../]
[./constant_injection_temperature]
type = DirichletBC
variable = temperature
value = 333
boundary = injection_area
[../]
[]
[Modules]
[./FluidProperties]
[./the_simple_fluid]
type = Water97FluidProperties
[../]
[../]
[]
[Materials]
[./porosity]
type = PorousFlowPorosity
porosity_zero = 0.1
[../]
[./biot_modulus]
type = PorousFlowConstantBiotModulus
biot_coefficient = 0.8
solid_bulk_compliance = 2E-7
fluid_bulk_modulus = 1E7
[../]
[./permeability_aquifer]
type = PorousFlowPermeabilityConst
block = aquifer
permeability = '1E-14 0 0 0 1E-14 0 0 0 1E-14'
[../]
[./permeability_caps]
type = PorousFlowPermeabilityConst
block = caps
permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-16'
[../]
[./thermal_expansion]
type = PorousFlowConstantThermalExpansionCoefficient
biot_coefficient = 0.8
drained_coefficient = 0.003
fluid_coefficient = 0.0002
[../]
[./rock_internal_energy]
type = PorousFlowMatrixInternalEnergy
density = 2500.0
specific_heat_capacity = 1200.0
[../]
[./thermal_conductivity]
type = PorousFlowThermalConductivityIdeal
dry_thermal_conductivity = '10 0 0 0 10 0 0 0 10'
block = 'caps aquifer'
[../]
[]
[Preconditioning]
active = basic
[./basic]
type = SMP
full = true
petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = ' asm lu NONZERO 2'
[../]
[./preferred_but_might_not_be_installed]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
[../]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1E6
dt = 1E5
nl_abs_tol = 1E-10
[]
[Outputs]
exodus = true
[]
modules/combined/test/tests/mortar_tm/2d/frictionless_first/finite.i
E_block = 1e7
E_plank = 1e7
elem = QUAD4
order = FIRST
name = 'finite'
[Mesh]
patch_size = 80
patch_update_strategy = auto
[./plank]
type = GeneratedMeshGenerator
dim = 2
xmin = -0.3
xmax = 0.3
ymin = -10
ymax = 10
nx = 2
ny = 67
elem_type = ${elem}
[../]
[./plank_sidesets]
type = RenameBoundaryGenerator
input = plank
old_boundary_id = '0 1 2 3'
new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
[../]
[./plank_id]
type = SubdomainIDGenerator
input = plank_sidesets
subdomain_id = 1
[../]
[./block]
type = GeneratedMeshGenerator
dim = 2
xmin = 0.31
xmax = 0.91
ymin = 7.7
ymax = 8.5
nx = 3
ny = 4
elem_type = ${elem}
[../]
[./block_id]
type = SubdomainIDGenerator
input = block
subdomain_id = 2
[../]
[./combined]
type = MeshCollectionGenerator
inputs = 'plank_id block_id'
[../]
[./block_rename]
type = RenameBlockGenerator
input = combined
old_block_id = '1 2'
new_block_name = 'plank block'
[../]
[./block_sidesets]
type = SideSetsFromPointsGenerator
input = block_rename
points = '0.6 7.7 0
0.91 8.0 0
0.6 8.5 0
0.31 8.0 0'
new_boundary = 'block_bottom block_right block_top block_left'
[../]
[]
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Variables]
[./disp_x]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[./disp_y]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[]
[Modules/TensorMechanics/Master]
[./action]
strain = FINITE
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'plank block'
[../]
[]
[Contact]
[./frictionless]
mesh = block_sidesets
master = plank_right
slave = block_left
formulation = mortar
system = constraint
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
preset = false
boundary = plank_left
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
preset = false
boundary = plank_bottom
value = 0.0
[../]
[./right_x]
type = FunctionDirichletBC
variable = disp_x
preset = false
boundary = block_right
function = '-0.04*sin(4*(t+1.5))+0.02'
[../]
[./right_y]
type = FunctionDirichletBC
variable = disp_y
preset = false
boundary = block_right
function = '-t'
[../]
[]
[Materials]
[./plank]
type = ComputeIsotropicElasticityTensor
block = 'plank'
poissons_ratio = 0.3
youngs_modulus = ${E_plank}
[../]
[./block]
type = ComputeIsotropicElasticityTensor
block = 'block'
poissons_ratio = 0.3
youngs_modulus = ${E_block}
[../]
[./stress]
type = ComputeFiniteStrainElasticStress
block = 'plank block'
[../]
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu 1e-5 NONZERO 1e-15'
end_time = 13.5
dt = 0.1
dtmin = 0.1
timestep_tolerance = 1e-6
line_search = 'contact'
[]
[Postprocessors]
[./nl_its]
type = NumNonlinearIterations
[../]
[./total_nl_its]
type = CumulativeValuePostprocessor
postprocessor = nl_its
[../]
[./l_its]
type = NumLinearIterations
[../]
[./total_l_its]
type = CumulativeValuePostprocessor
postprocessor = l_its
[../]
[./contact]
type = ContactDOFSetSize
variable = frictionless_normal_lm
subdomain = frictionless_slave_subdomain
[../]
[./avg_hydro]
type = ElementAverageValue
variable = hydrostatic_stress
block = 'block'
[../]
[./max_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
[../]
[./min_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
value_type = min
[../]
[./avg_vonmises]
type = ElementAverageValue
variable = vonmises_stress
block = 'block'
[../]
[./max_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
[../]
[./min_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
value_type = min
[../]
[]
[Outputs]
exodus = true
file_base = ${name}
[./comp]
type = CSV
show = 'contact'
[../]
[./out]
type = CSV
file_base = '${name}_out'
[../]
[]
[Debug]
show_var_residual_norms = true
[]
test/tests/meshgenerators/rename_block_generator/rename_block1.i
[Mesh]
[./gmg]
type = GeneratedMeshGenerator
dim = 3
nx = 2
ny = 2
nz = 2
xmin = -1
xmax = 1
ymin = -1
ymax = 1
zmin = -1
zmax = 1
[]
[./subdomain0]
type = SubdomainBoundingBoxGenerator
input = gmg
block_id = 1
bottom_left = '-1 -1 -1'
top_right = '0 0 0'
[]
[./re_id]
type = RenameBlockGenerator
input = subdomain0
old_block_id = '0 1'
new_block_id = '2 3'
[]
[./rename_no_effect]
type = RenameBlockGenerator
input = re_id
old_block_id = '5 0 1'
new_block_name = 'five zero one'
[]
[./rename]
type = RenameBlockGenerator
input = rename_no_effect
old_block_id = '2'
new_block_name = 'two_was_zero'
[]
[./rename_block2]
type = RenameBlockGenerator
input = rename
old_block_name = 'two_was_zero'
new_block_name = 'simply_two'
[]
[./rename_blockID3]
type = RenameBlockGenerator
input = rename_block2
old_block_id = '3'
new_block_name = 'three'
[]
[./three_to_4]
type = RenameBlockGenerator
input = rename_blockID3
old_block_name = 'three'
new_block_id = 4
[]
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = Diffusion
variable = u
[../]
[]
[BCs]
[./bottom]
type = DirichletBC
variable = u
boundary = bottom
value = 0
[../]
[./top]
type = DirichletBC
variable = u
boundary = top
value = 0
[../]
[]
[Executioner]
type = Steady
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
modules/combined/test/tests/mortar_tm/2drz/frictionless_first/finite.i
E_block = 1e7
E_plank = 1e7
elem = QUAD4
order = FIRST
name = 'finite'
[Problem]
coord_type = RZ
[]
[Mesh]
patch_size = 80
patch_update_strategy = auto
[./plank]
type = GeneratedMeshGenerator
dim = 2
xmin = 0
xmax = 0.6
ymin = -10
ymax = 10
nx = 2
ny = 67
elem_type = ${elem}
[../]
[./plank_sidesets]
type = RenameBoundaryGenerator
input = plank
old_boundary_id = '0 1 2 3'
new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
[../]
[./plank_id]
type = SubdomainIDGenerator
input = plank_sidesets
subdomain_id = 1
[../]
[./block]
type = GeneratedMeshGenerator
dim = 2
xmin = 0.61
xmax = 1.21
ymin = 9.2
ymax = 10.0
nx = 3
ny = 4
elem_type = ${elem}
[../]
[./block_id]
type = SubdomainIDGenerator
input = block
subdomain_id = 2
[../]
[./combined]
type = MeshCollectionGenerator
inputs = 'plank_id block_id'
[../]
[./block_rename]
type = RenameBlockGenerator
input = combined
old_block_id = '1 2'
new_block_name = 'plank block'
[../]
[./block_sidesets]
type = SideSetsFromPointsGenerator
input = block_rename
points = '0.9 9.2 0
1.21 9.5 0
0.9 10.0 0
0.61 9.5 0'
new_boundary = 'block_bottom block_right block_top block_left'
[../]
[]
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Variables]
[./disp_x]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[./disp_y]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[]
[Modules/TensorMechanics/Master]
[./block]
strain = FINITE
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'block'
[../]
[./plank]
strain = FINITE
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'plank'
eigenstrain_names = 'swell'
[../]
[]
[Contact]
[./frictionless]
mesh = block_sidesets
master = plank_right
slave = block_left
formulation = mortar
system = constraint
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
boundary = plank_left
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
boundary = plank_bottom
value = 0.0
[../]
[./right_x]
type = DirichletBC
variable = disp_x
boundary = block_right
value = 0
[../]
[./right_y]
type = FunctionDirichletBC
variable = disp_y
preset = false
boundary = block_right
function = '-t'
[../]
[]
[Materials]
[./plank]
type = ComputeIsotropicElasticityTensor
block = 'plank'
poissons_ratio = 0.3
youngs_modulus = ${E_plank}
[../]
[./block]
type = ComputeIsotropicElasticityTensor
block = 'block'
poissons_ratio = 0.3
youngs_modulus = ${E_block}
[../]
[./stress]
type = ComputeFiniteStrainElasticStress
block = 'plank block'
[../]
[./swell]
type = ComputeEigenstrain
block = 'plank'
eigenstrain_name = swell
eigen_base = '1 0 0 0 0 0 0 0 0'
prefactor = swell_mat
[../]
[./swell_mat]
type = GenericFunctionMaterial
prop_names = 'swell_mat'
prop_values = '7e-2*(1-cos(4*t))'
block = 'plank'
[../]
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu 1e-5 NONZERO 1e-15'
end_time = 10
dt = 0.1
dtmin = 0.1
timestep_tolerance = 1e-6
line_search = 'contact'
[]
[Postprocessors]
[./nl_its]
type = NumNonlinearIterations
[../]
[./total_nl_its]
type = CumulativeValuePostprocessor
postprocessor = nl_its
[../]
[./l_its]
type = NumLinearIterations
[../]
[./total_l_its]
type = CumulativeValuePostprocessor
postprocessor = l_its
[../]
[./contact]
type = ContactDOFSetSize
variable = frictionless_normal_lm
subdomain = frictionless_slave_subdomain
[../]
[./avg_hydro]
type = ElementAverageValue
variable = hydrostatic_stress
block = 'block'
[../]
[./max_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
[../]
[./min_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
value_type = min
[../]
[./avg_vonmises]
type = ElementAverageValue
variable = vonmises_stress
block = 'block'
[../]
[./max_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
[../]
[./min_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
value_type = min
[../]
[]
[Outputs]
exodus = true
file_base = ${name}
[./comp]
type = CSV
show = 'contact'
[../]
[./out]
type = CSV
file_base = '${name}_out'
[../]
[]
[Debug]
show_var_residual_norms = true
[]
modules/porous_flow/examples/tutorial/04.i
# Darcy flow with heat advection and conduction, and elasticity
[Mesh]
[annular]
type = AnnularMeshGenerator
nr = 10
rmin = 1.0
rmax = 10
growth_r = 1.4
nt = 4
dmin = 0
dmax = 90
[]
[./make3D]
type = MeshExtruderGenerator
extrusion_vector = '0 0 12'
num_layers = 3
bottom_sideset = 'bottom'
top_sideset = 'top'
input = annular
[../]
[./shift_down]
type = TransformGenerator
transform = TRANSLATE
vector_value = '0 0 -6'
input = make3D
[../]
[./aquifer]
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 0 -2'
top_right = '10 10 2'
input = shift_down
[../]
[./injection_area]
type = ParsedGenerateSideset
combinatorial_geometry = 'x*x+y*y<1.01'
included_subdomain_ids = 1
new_sideset_name = 'injection_area'
input = 'aquifer'
[../]
[./rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caps aquifer'
input = 'injection_area'
[../]
[]
[GlobalParams]
displacements = 'disp_x disp_y disp_z'
PorousFlowDictator = dictator
biot_coefficient = 1.0
[]
[Variables]
[./porepressure]
[../]
[./temperature]
initial_condition = 293
scaling = 1E-8
[../]
[./disp_x]
scaling = 1E-10
[../]
[./disp_y]
scaling = 1E-10
[../]
[./disp_z]
scaling = 1E-10
[../]
[]
[PorousFlowBasicTHM]
porepressure = porepressure
temperature = temperature
coupling_type = ThermoHydroMechanical
gravity = '0 0 0'
fp = the_simple_fluid
thermal_eigenstrain_name = thermal_contribution
use_displaced_mesh = false
[]
[BCs]
[./constant_injection_porepressure]
type = DirichletBC
variable = porepressure
value = 1E6
boundary = injection_area
[../]
[./constant_injection_temperature]
type = DirichletBC
variable = temperature
value = 313
boundary = injection_area
[../]
[./roller_tmax]
type = DirichletBC
variable = disp_x
value = 0
boundary = dmax
[../]
[./roller_tmin]
type = DirichletBC
variable = disp_y
value = 0
boundary = dmin
[../]
[./roller_top_bottom]
type = DirichletBC
variable = disp_z
value = 0
boundary = 'top bottom'
[../]
[./cavity_pressure_x]
type = Pressure
boundary = injection_area
variable = disp_x
component = 0
factor = 1E6
use_displaced_mesh = false
[../]
[./cavity_pressure_y]
type = Pressure
boundary = injection_area
variable = disp_y
component = 1
factor = 1E6
use_displaced_mesh = false
[../]
[]
[AuxVariables]
[./stress_rr]
family = MONOMIAL
order = CONSTANT
[../]
[./stress_pp]
family = MONOMIAL
order = CONSTANT
[../]
[]
[AuxKernels]
[./stress_rr]
type = RankTwoScalarAux
rank_two_tensor = stress
variable = stress_rr
scalar_type = RadialStress
point1 = '0 0 0'
point2 = '0 0 1'
[../]
[./stress_pp]
type = RankTwoScalarAux
rank_two_tensor = stress
variable = stress_pp
scalar_type = HoopStress
point1 = '0 0 0'
point2 = '0 0 1'
[../]
[]
[Modules]
[./FluidProperties]
[./the_simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 2E9
viscosity = 1.0E-3
density0 = 1000.0
thermal_expansion = 0.0002
cp = 4194
cv = 4186
porepressure_coefficient = 0
[../]
[../]
[]
[Materials]
[./porosity]
type = PorousFlowPorosity
porosity_zero = 0.1
[../]
[./biot_modulus]
type = PorousFlowConstantBiotModulus
solid_bulk_compliance = 2E-7
fluid_bulk_modulus = 1E7
[../]
[./permeability_aquifer]
type = PorousFlowPermeabilityConst
block = aquifer
permeability = '1E-14 0 0 0 1E-14 0 0 0 1E-14'
[../]
[./permeability_caps]
type = PorousFlowPermeabilityConst
block = caps
permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-16'
[../]
[./thermal_expansion]
type = PorousFlowConstantThermalExpansionCoefficient
drained_coefficient = 0.003
fluid_coefficient = 0.0002
[../]
[./rock_internal_energy]
type = PorousFlowMatrixInternalEnergy
density = 2500.0
specific_heat_capacity = 1200.0
[../]
[./thermal_conductivity]
type = PorousFlowThermalConductivityIdeal
dry_thermal_conductivity = '10 0 0 0 10 0 0 0 10'
block = 'caps aquifer'
[../]
[./elasticity_tensor]
type = ComputeIsotropicElasticityTensor
youngs_modulus = 5E9
poissons_ratio = 0.0
[../]
[./strain]
type = ComputeSmallStrain
eigenstrain_names = thermal_contribution
[../]
[./thermal_contribution]
type = ComputeThermalExpansionEigenstrain
temperature = temperature
thermal_expansion_coeff = 0.001 # this is the linear thermal expansion coefficient
eigenstrain_name = thermal_contribution
stress_free_temperature = 293
[../]
[./stress]
type = ComputeLinearElasticStress
[../]
[]
[Preconditioning]
active = basic
[./basic]
type = SMP
full = true
petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = ' asm lu NONZERO 2'
[../]
[./preferred_but_might_not_be_installed]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
[../]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1E6
dt = 1E5
nl_abs_tol = 1E-15
nl_rel_tol = 1E-14
[]
[Outputs]
exodus = true
[]
modules/porous_flow/test/tests/actions/basicthm_th.i
# PorousFlowBasicTHM action with coupling_type = ThermoHydroGenerator
# (no mechanical effects)
[Mesh]
[gen]
type = GeneratedMeshGenerator
dim = 2
nx = 10
ny = 3
xmax = 10
ymax = 3
[]
[./aquifer]
input = gen
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 1 0'
top_right = '10 2 0'
[../]
[./injection_area]
type = SideSetsAroundSubdomainGenerator
block = 1
new_boundary = 'injection_area'
normal = '-1 0 0'
input = 'aquifer'
[../]
[./outflow_area]
type = SideSetsAroundSubdomainGenerator
block = 1
new_boundary = 'outflow_area'
normal = '1 0 0'
input = 'injection_area'
[../]
[./rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caprock aquifer'
input = 'outflow_area'
[../]
[]
[GlobalParams]
PorousFlowDictator = dictator
[]
[Variables]
[./porepressure]
initial_condition = 1e6
[../]
[./temperature]
initial_condition = 293
scaling = 1e-6
[../]
[]
[PorousFlowBasicTHM]
porepressure = porepressure
temperature = temperature
coupling_type = ThermoHydro
gravity = '0 0 0'
fp = simple_fluid
[]
[BCs]
[./constant_injection_porepressure]
type = DirichletBC
variable = porepressure
value = 1.5e6
boundary = injection_area
[../]
[./constant_injection_temperature]
type = DirichletBC
variable = temperature
value = 313
boundary = injection_area
[../]
[./constant_outflow_porepressure]
type = PorousFlowPiecewiseLinearSink
variable = porepressure
boundary = outflow_area
pt_vals = '0 1e9'
multipliers = '0 1e9'
flux_function = 1e-6
PT_shift = 1e6
[../]
[./constant_outflow_temperature]
type = DirichletBC
variable = temperature
value = 293
boundary = outflow_area
[../]
[]
[Modules]
[./FluidProperties]
[./simple_fluid]
type = SimpleFluidProperties
[../]
[../]
[]
[Materials]
[./porosity]
type = PorousFlowPorosity
porosity_zero = 0.1
[../]
[./biot_modulus]
type = PorousFlowConstantBiotModulus
biot_coefficient = 0.8
solid_bulk_compliance = 2e-7
fluid_bulk_modulus = 1e7
[../]
[./permeability_aquifer]
type = PorousFlowPermeabilityConst
block = aquifer
permeability = '1e-13 0 0 0 1e-13 0 0 0 1e-13'
[../]
[./permeability_caprock]
type = PorousFlowPermeabilityConst
block = caprock
permeability = '1e-15 0 0 0 1e-15 0 0 0 1e-15'
[../]
[./thermal_expansion]
type = PorousFlowConstantThermalExpansionCoefficient
biot_coefficient = 0.8
drained_coefficient = 0.003
fluid_coefficient = 0.0002
[../]
[./rock_internal_energy]
type = PorousFlowMatrixInternalEnergy
density = 2500.0
specific_heat_capacity = 1200.0
[../]
[./thermal_conductivity]
type = PorousFlowThermalConductivityIdeal
dry_thermal_conductivity = '10 0 0 0 10 0 0 0 10'
block = 'caprock aquifer'
[../]
[]
[Preconditioning]
[./basic]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1e4
dt = 1e3
nl_abs_tol = 1e-15
nl_rel_tol = 1e-14
[]
[Outputs]
exodus = true
[]
modules/combined/test/tests/mortar_tm/2drz/frictionless_first/finite_noaction.i
E_block = 1e7
E_plank = 1e7
elem = QUAD4
order = FIRST
name = 'finite_noaction'
[Problem]
coord_type = RZ
[]
[Mesh]
patch_size = 80
patch_update_strategy = auto
[./plank]
type = GeneratedMeshGenerator
dim = 2
xmin = 0
xmax = 0.6
ymin = -10
ymax = 10
nx = 2
ny = 67
elem_type = ${elem}
[../]
[./plank_sidesets]
type = RenameBoundaryGenerator
input = plank
old_boundary_id = '0 1 2 3'
new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
[../]
[./plank_id]
type = SubdomainIDGenerator
input = plank_sidesets
subdomain_id = 1
[../]
[./block]
type = GeneratedMeshGenerator
dim = 2
xmin = 0.61
xmax = 1.21
ymin = 9.2
ymax = 10.0
nx = 3
ny = 4
elem_type = ${elem}
[../]
[./block_id]
type = SubdomainIDGenerator
input = block
subdomain_id = 2
[../]
[./combined]
type = MeshCollectionGenerator
inputs = 'plank_id block_id'
[../]
[./block_rename]
type = RenameBlockGenerator
input = combined
old_block_id = '1 2'
new_block_name = 'plank block'
[../]
[./block_sidesets]
type = SideSetsFromPointsGenerator
input = block_rename
points = '0.9 9.2 0
1.21 9.5 0
0.9 10.0 0
0.61 9.5 0'
new_boundary = 'block_bottom block_right block_top block_left'
[../]
[./slave]
input = block_sidesets
type = LowerDBlockFromSidesetGenerator
sidesets = 'block_left'
new_block_id = '30'
new_block_name = 'frictionless_slave_subdomain'
[../]
[./master]
input = slave
type = LowerDBlockFromSidesetGenerator
sidesets = 'plank_right'
new_block_id = '20'
new_block_name = 'frictionless_master_subdomain'
[../]
[]
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Variables]
[./disp_x]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[./disp_y]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[./frictionless_normal_lm]
order = ${order}
block = 'frictionless_slave_subdomain'
[../]
[]
[Modules/TensorMechanics/Master]
[./block]
strain = FINITE
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'block'
[../]
[./plank]
strain = FINITE
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'plank'
eigenstrain_names = 'swell'
[../]
[]
[Constraints]
[./lm]
type = NormalNodalLMMechanicalContact
slave = block_left
master = plank_right
variable = frictionless_normal_lm
master_variable = disp_x
disp_y = disp_y
ncp_function_type = min
use_displaced_mesh = true
[../]
[./normal_x]
type = NormalMortarMechanicalContact
master_boundary = plank_right
slave_boundary = block_left
master_subdomain = frictionless_master_subdomain
slave_subdomain = frictionless_slave_subdomain
variable = frictionless_normal_lm
slave_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = false
[../]
[./normal_y]
type = NormalMortarMechanicalContact
master_boundary = plank_right
slave_boundary = block_left
master_subdomain = frictionless_master_subdomain
slave_subdomain = frictionless_slave_subdomain
variable = frictionless_normal_lm
slave_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = false
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
boundary = plank_left
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
boundary = plank_bottom
value = 0.0
[../]
[./right_x]
type = DirichletBC
variable = disp_x
boundary = block_right
value = 0
[../]
[./right_y]
type = FunctionDirichletBC
variable = disp_y
boundary = block_right
function = '-t'
[../]
[]
[Materials]
[./plank]
type = ComputeIsotropicElasticityTensor
block = 'plank'
poissons_ratio = 0.3
youngs_modulus = ${E_plank}
[../]
[./block]
type = ComputeIsotropicElasticityTensor
block = 'block'
poissons_ratio = 0.3
youngs_modulus = ${E_block}
[../]
[./stress]
type = ComputeFiniteStrainElasticStress
block = 'plank block'
[../]
[./swell]
type = ComputeEigenstrain
block = 'plank'
eigenstrain_name = swell
eigen_base = '1 0 0 0 0 0 0 0 0'
prefactor = swell_mat
[../]
[./swell_mat]
type = GenericFunctionMaterial
prop_names = 'swell_mat'
prop_values = '7e-2*(1-cos(4*t))'
block = 'plank'
[../]
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu 1e-5 NONZERO 1e-15'
end_time = 10
dt = 0.1
dtmin = 0.1
timestep_tolerance = 1e-6
line_search = 'contact'
[]
[Postprocessors]
[./nl_its]
type = NumNonlinearIterations
[../]
[./total_nl_its]
type = CumulativeValuePostprocessor
postprocessor = nl_its
[../]
[./l_its]
type = NumLinearIterations
[../]
[./total_l_its]
type = CumulativeValuePostprocessor
postprocessor = l_its
[../]
[./contact]
type = ContactDOFSetSize
variable = frictionless_normal_lm
subdomain = frictionless_slave_subdomain
[../]
[./avg_hydro]
type = ElementAverageValue
variable = hydrostatic_stress
block = 'block'
[../]
[./max_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
[../]
[./min_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
value_type = min
[../]
[./avg_vonmises]
type = ElementAverageValue
variable = vonmises_stress
block = 'block'
[../]
[./max_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
[../]
[./min_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
value_type = min
[../]
[]
[Outputs]
exodus = true
file_base = ${name}
[./comp]
type = CSV
show = 'contact'
[../]
[./out]
type = CSV
file_base = '${name}_out'
[../]
[]
[Debug]
show_var_residual_norms = true
[]
modules/porous_flow/examples/tutorial/01.i
# Darcy flow
[Mesh]
[annular]
type = AnnularMeshGenerator
nr = 10
rmin = 1.0
rmax = 10
growth_r = 1.4
nt = 4
dmin = 0
dmax = 90
[]
[./make3D]
type = MeshExtruderGenerator
extrusion_vector = '0 0 12'
num_layers = 3
bottom_sideset = 'bottom'
top_sideset = 'top'
input = annular
[../]
[./shift_down]
type = TransformGenerator
transform = TRANSLATE
vector_value = '0 0 -6'
input = make3D
[../]
[./aquifer]
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 0 -2'
top_right = '10 10 2'
input = shift_down
[../]
[./injection_area]
type = ParsedGenerateSideset
combinatorial_geometry = 'x*x+y*y<1.01'
included_subdomain_ids = 1
new_sideset_name = 'injection_area'
input = 'aquifer'
[../]
[./rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caps aquifer'
input = 'injection_area'
[../]
[]
[GlobalParams]
PorousFlowDictator = dictator
[]
[Variables]
[./porepressure]
[../]
[]
[PorousFlowBasicTHM]
porepressure = porepressure
coupling_type = Hydro
gravity = '0 0 0'
fp = the_simple_fluid
[]
[BCs]
[./constant_injection_porepressure]
type = DirichletBC
variable = porepressure
value = 1E6
boundary = injection_area
[../]
[]
[Modules]
[./FluidProperties]
[./the_simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 2E9
viscosity = 1.0E-3
density0 = 1000.0
[../]
[../]
[]
[Materials]
[./porosity]
type = PorousFlowPorosity
porosity_zero = 0.1
[../]
[./biot_modulus]
type = PorousFlowConstantBiotModulus
biot_coefficient = 0.8
solid_bulk_compliance = 2E-7
fluid_bulk_modulus = 1E7
[../]
[./permeability_aquifer]
type = PorousFlowPermeabilityConst
block = aquifer
permeability = '1E-14 0 0 0 1E-14 0 0 0 1E-14'
[../]
[./permeability_caps]
type = PorousFlowPermeabilityConst
block = caps
permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-16'
[../]
[]
[Preconditioning]
active = basic
[./basic]
type = SMP
full = true
[../]
[./preferred_but_might_not_be_installed]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
[../]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1E6
dt = 1E5
nl_abs_tol = 1E-13
[]
[Outputs]
exodus = true
[]
modules/combined/test/tests/mortar_tm/2d/frictionless_second/finite.i
E_block = 1e7
E_plank = 1e7
elem = QUAD9
order = SECOND
name = 'finite'
[Mesh]
patch_size = 80
patch_update_strategy = iteration
[./plank]
type = GeneratedMeshGenerator
dim = 2
xmin = -0.3
xmax = 0.3
ymin = -10
ymax = 10
nx = 2
ny = 67
elem_type = ${elem}
[../]
[./plank_sidesets]
type = RenameBoundaryGenerator
input = plank
old_boundary_id = '0 1 2 3'
new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
[../]
[./plank_id]
type = SubdomainIDGenerator
input = plank_sidesets
subdomain_id = 1
[../]
[./block]
type = GeneratedMeshGenerator
dim = 2
xmin = 0.31
xmax = 0.91
ymin = 7.7
ymax = 8.5
nx = 3
ny = 4
elem_type = ${elem}
[../]
[./block_id]
type = SubdomainIDGenerator
input = block
subdomain_id = 2
[../]
[./combined]
type = MeshCollectionGenerator
inputs = 'plank_id block_id'
[../]
[./block_rename]
type = RenameBlockGenerator
input = combined
old_block_id = '1 2'
new_block_name = 'plank block'
[../]
[./block_sidesets]
type = SideSetsFromPointsGenerator
input = block_rename
points = '0.6 7.7 0
0.91 8.0 0
0.6 8.5 0
0.31 8.0 0'
new_boundary = 'block_bottom block_right block_top block_left'
[../]
[]
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Variables]
[./disp_x]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[./disp_y]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[]
[Modules/TensorMechanics/Master]
[./action]
strain = FINITE
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'plank block'
[../]
[]
[Contact]
[./frictionless]
mesh = block_sidesets
master = plank_right
slave = block_left
formulation = mortar
system = constraint
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
preset = false
boundary = plank_left
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
preset = false
boundary = plank_bottom
value = 0.0
[../]
[./right_x]
type = FunctionDirichletBC
variable = disp_x
preset = false
boundary = block_right
function = '-0.04*sin(4*(t+1.5))+0.02'
[../]
[./right_y]
type = FunctionDirichletBC
variable = disp_y
preset = false
boundary = block_right
function = '-t'
[../]
[]
[Materials]
[./plank]
type = ComputeIsotropicElasticityTensor
block = 'plank'
poissons_ratio = 0.3
youngs_modulus = ${E_plank}
[../]
[./block]
type = ComputeIsotropicElasticityTensor
block = 'block'
poissons_ratio = 0.3
youngs_modulus = ${E_block}
[../]
[./stress]
type = ComputeFiniteStrainElasticStress
block = 'plank block'
[../]
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu 1e-5 NONZERO 1e-15'
end_time = 13.5
dt = 0.1
dtmin = 0.1
timestep_tolerance = 1e-6
line_search = 'contact'
l_max_its = 30
[]
[Postprocessors]
[./nl_its]
type = NumNonlinearIterations
[../]
[./total_nl_its]
type = CumulativeValuePostprocessor
postprocessor = nl_its
[../]
[./l_its]
type = NumLinearIterations
[../]
[./total_l_its]
type = CumulativeValuePostprocessor
postprocessor = l_its
[../]
[./contact]
type = ContactDOFSetSize
variable = frictionless_normal_lm
subdomain = frictionless_slave_subdomain
[../]
[./avg_hydro]
type = ElementAverageValue
variable = hydrostatic_stress
block = 'block'
[../]
[./max_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
[../]
[./min_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
value_type = min
[../]
[./avg_vonmises]
type = ElementAverageValue
variable = vonmises_stress
block = 'block'
[../]
[./max_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
[../]
[./min_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
value_type = min
[../]
[]
[Outputs]
exodus = true
file_base = ${name}
[./comp]
type = CSV
show = 'contact'
[../]
[./out]
type = CSV
file_base = '${name}_out'
[../]
[]
[Debug]
show_var_residual_norms = true
[]
modules/heat_conduction/test/tests/radiation_transfer_action/radiative_transfer_action.i
[Problem]
kernel_coverage_check = false
[]
[Mesh]
type = MeshGeneratorMesh
[./cmg]
type = CartesianMeshGenerator
dim = 2
dx = '1 1.3 1.9'
ix = '3 3 3'
dy = '2 1.2 0.9'
iy = '3 3 3'
subdomain_id = '0 1 0
4 5 2
0 3 0'
[../]
[./inner_bottom]
type = SideSetsBetweenSubdomainsGenerator
input = cmg
master_block = 1
paired_block = 5
new_boundary = 'inner_bottom'
[../]
[./inner_left]
type = SideSetsBetweenSubdomainsGenerator
input = inner_bottom
master_block = 4
paired_block = 5
new_boundary = 'inner_left'
[../]
[./inner_right]
type = SideSetsBetweenSubdomainsGenerator
input = inner_left
master_block = 2
paired_block = 5
new_boundary = 'inner_right'
[../]
[./inner_top]
type = SideSetsBetweenSubdomainsGenerator
input = inner_right
master_block = 3
paired_block = 5
new_boundary = 'inner_top'
[../]
[./rename]
type = RenameBlockGenerator
old_block_id = '1 2 3 4'
new_block_id = '0 0 0 0'
input = inner_top
[../]
[]
[Variables]
[./temperature]
block = 0
[../]
[]
[Kernels]
[./heat_conduction]
type = HeatConduction
variable = temperature
block = 0
diffusion_coefficient = 5
[../]
[]
[GrayDiffuseRadiation]
[./cavity]
sidesets = '4 5 6 7'
emissivity = '0.9 0.8 0.4 1'
n_patches = '2 2 2 3'
partitioners = 'centroid centroid centroid centroid'
centroid_partitioner_directions = 'x y y x'
final_mesh_generator = rename
temperature = temperature
adiabatic_sidesets = '7'
fixed_temperature_sidesets = '4'
fixed_boundary_temperatures = '1200'
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = temperature
boundary = left
value = 600
[../]
[./right]
type = DirichletBC
variable = temperature
boundary = right
value = 300
[../]
[]
[Postprocessors]
[./average_T_inner_right]
type = SideAverageValue
variable = temperature
boundary = inner_right
[../]
[]
[Executioner]
type = Steady
[]
[Outputs]
exodus = true
[]
modules/combined/test/tests/mortar_tm/2drz/frictionless_second/small.i
E_block = 1e7
E_plank = 1e7
elem = QUAD9
order = SECOND
name = 'small'
[Problem]
coord_type = RZ
[]
[Mesh]
patch_size = 80
patch_update_strategy = auto
[./plank]
type = GeneratedMeshGenerator
dim = 2
xmin = 0
xmax = 0.6
ymin = -10
ymax = 10
nx = 2
ny = 67
elem_type = ${elem}
[../]
[./plank_sidesets]
type = RenameBoundaryGenerator
input = plank
old_boundary_id = '0 1 2 3'
new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
[../]
[./plank_id]
type = SubdomainIDGenerator
input = plank_sidesets
subdomain_id = 1
[../]
[./block]
type = GeneratedMeshGenerator
dim = 2
xmin = 0.61
xmax = 1.21
ymin = 9.2
ymax = 10.0
nx = 3
ny = 4
elem_type = ${elem}
[../]
[./block_id]
type = SubdomainIDGenerator
input = block
subdomain_id = 2
[../]
[./combined]
type = MeshCollectionGenerator
inputs = 'plank_id block_id'
[../]
[./block_rename]
type = RenameBlockGenerator
input = combined
old_block_id = '1 2'
new_block_name = 'plank block'
[../]
[./corner]
type = ExtraNodesetGenerator
input = block_rename
coord = '0 -10.0'
new_boundary = point
[../]
[./block_sidesets]
type = SideSetsFromPointsGenerator
input = corner
points = '0.9 9.2 0
1.21 9.5 0
0.9 10.0 0
0.61 9.5 0'
new_boundary = 'block_bottom block_right block_top block_left'
[../]
[]
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Variables]
[./disp_x]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[./disp_y]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[]
[Modules/TensorMechanics/Master]
[./block]
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'block'
[../]
[./plank]
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'plank'
eigenstrain_names = 'swell'
[../]
[]
[Contact]
[./frictionless]
mesh = block_sidesets
master = plank_right
slave = block_left
formulation = mortar
system = constraint
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
boundary = plank_left
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
boundary = plank_bottom
value = 0.0
[../]
[./right_x]
type = DirichletBC
variable = disp_x
boundary = block_right
value = 0
[../]
[./right_y]
type = FunctionDirichletBC
variable = disp_y
boundary = block_right
function = '-t'
[../]
[]
[Materials]
[./plank]
type = ComputeIsotropicElasticityTensor
block = 'plank'
poissons_ratio = 0.3
youngs_modulus = ${E_plank}
[../]
[./block]
type = ComputeIsotropicElasticityTensor
block = 'block'
poissons_ratio = 0.3
youngs_modulus = ${E_block}
[../]
[./stress]
type = ComputeLinearElasticStress
block = 'plank block'
[../]
[./swell]
type = ComputeEigenstrain
block = 'plank'
eigenstrain_name = swell
eigen_base = '1 0 0 0 0 0 0 0 0'
prefactor = swell_mat
[../]
[./swell_mat]
type = GenericFunctionMaterial
prop_names = 'swell_mat'
prop_values = '7e-2*(1-cos(4*t))'
block = 'plank'
[../]
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu 1e-5 NONZERO 1e-15'
end_time = 10
dt = 0.1
dtmin = 0.1
timestep_tolerance = 1e-6
line_search = 'contact'
[]
[Postprocessors]
[./nl_its]
type = NumNonlinearIterations
[../]
[./total_nl_its]
type = CumulativeValuePostprocessor
postprocessor = nl_its
[../]
[./l_its]
type = NumLinearIterations
[../]
[./total_l_its]
type = CumulativeValuePostprocessor
postprocessor = l_its
[../]
[./contact]
type = ContactDOFSetSize
variable = frictionless_normal_lm
subdomain = frictionless_slave_subdomain
[../]
[./avg_hydro]
type = ElementAverageValue
variable = hydrostatic_stress
block = 'block'
[../]
[./max_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
[../]
[./min_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
value_type = min
[../]
[./avg_vonmises]
type = ElementAverageValue
variable = vonmises_stress
block = 'block'
[../]
[./max_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
[../]
[./min_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
value_type = min
[../]
[]
[Outputs]
exodus = true
file_base = ${name}
[./comp]
type = CSV
show = 'contact'
[../]
[./out]
type = CSV
file_base = '${name}_out'
[../]
[]
[Debug]
show_var_residual_norms = true
[]
modules/combined/test/tests/mortar_tm/2drz/ad_frictionless_first/small.i
E_block = 1e7
E_plank = 1e7
elem = QUAD4
order = FIRST
name = 'small'
[Problem]
coord_type = RZ
[]
[Mesh]
patch_size = 80
patch_update_strategy = auto
[./plank]
type = GeneratedMeshGenerator
dim = 2
xmin = 0
xmax = 0.6
ymin = -10
ymax = 10
nx = 2
ny = 67
elem_type = ${elem}
[../]
[./plank_sidesets]
type = RenameBoundaryGenerator
input = plank
old_boundary_id = '0 1 2 3'
new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
[../]
[./plank_id]
type = SubdomainIDGenerator
input = plank_sidesets
subdomain_id = 1
[../]
[./block]
type = GeneratedMeshGenerator
dim = 2
xmin = 0.61
xmax = 1.21
ymin = 9.2
ymax = 10.0
nx = 3
ny = 4
elem_type = ${elem}
[../]
[./block_id]
type = SubdomainIDGenerator
input = block
subdomain_id = 2
[../]
[./combined]
type = MeshCollectionGenerator
inputs = 'plank_id block_id'
[../]
[./block_rename]
type = RenameBlockGenerator
input = combined
old_block_id = '1 2'
new_block_name = 'plank block'
[../]
[./corner]
type = ExtraNodesetGenerator
input = block_rename
coord = '0 -10.0'
new_boundary = point
[../]
[./block_sidesets]
type = SideSetsFromPointsGenerator
input = corner
points = '0.9 9.2 0
1.21 9.5 0
0.9 10.0 0
0.61 9.5 0'
new_boundary = 'block_bottom block_right block_top block_left'
[../]
[]
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Variables]
[./disp_x]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[./disp_y]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[]
[Modules/TensorMechanics/Master]
[./block]
use_automatic_differentiation = true
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'block'
[../]
[./plank]
use_automatic_differentiation = true
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'plank'
eigenstrain_names = 'swell'
[../]
[]
[Contact]
[./frictionless]
mesh = block_sidesets
master = plank_right
slave = block_left
formulation = mortar
system = constraint
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
boundary = plank_left
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
boundary = plank_bottom
value = 0.0
[../]
[./right_x]
type = DirichletBC
variable = disp_x
boundary = block_right
value = 0
[../]
[./right_y]
type = ADFunctionDirichletBC
variable = disp_y
boundary = block_right
function = '-t'
[../]
[]
[Materials]
[./plank]
type = ComputeIsotropicElasticityTensor
block = 'plank'
poissons_ratio = 0.3
youngs_modulus = ${E_plank}
[../]
[./block]
type = ComputeIsotropicElasticityTensor
block = 'block'
poissons_ratio = 0.3
youngs_modulus = ${E_block}
[../]
[./stress]
type = ADComputeLinearElasticStress
block = 'plank block'
[../]
[./swell]
type = ADComputeEigenstrain
block = 'plank'
eigenstrain_name = swell
eigen_base = '1 0 0 0 0 0 0 0 0'
prefactor = swell_mat
[../]
[./swell_mat]
type = GenericFunctionMaterial
prop_names = 'swell_mat'
prop_values = '7e-2*(1-cos(4*t))'
block = 'plank'
[../]
[]
[Executioner]
type = Transient
solve_type = 'NEWTON'
petsc_options = '-snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu 1e-5 NONZERO 1e-15'
end_time = 10
dt = 0.1
dtmin = 0.1
timestep_tolerance = 1e-6
line_search = 'contact'
[]
[Postprocessors]
[./nl_its]
type = NumNonlinearIterations
[../]
[./total_nl_its]
type = CumulativeValuePostprocessor
postprocessor = nl_its
[../]
[./l_its]
type = NumLinearIterations
[../]
[./total_l_its]
type = CumulativeValuePostprocessor
postprocessor = l_its
[../]
[./contact]
type = ContactDOFSetSize
variable = frictionless_normal_lm
subdomain = frictionless_slave_subdomain
[../]
[./avg_hydro]
type = ElementAverageValue
variable = hydrostatic_stress
block = 'block'
[../]
[./max_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
[../]
[./min_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
value_type = min
[../]
[./avg_vonmises]
type = ElementAverageValue
variable = vonmises_stress
block = 'block'
[../]
[./max_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
[../]
[./min_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
value_type = min
[../]
[]
[Outputs]
exodus = true
file_base = ${name}
[./comp]
type = CSV
show = 'contact'
[../]
[./out]
type = CSV
file_base = '${name}_out'
[../]
[]
[Debug]
show_var_residual_norms = true
[]
modules/combined/test/tests/mortar_tm/2d/ad_frictionless_sec/finite.i
E_block = 1e7
E_plank = 1e7
elem = QUAD9
order = SECOND
name = 'finite'
[Mesh]
patch_size = 80
patch_update_strategy = auto
[./plank]
type = GeneratedMeshGenerator
dim = 2
xmin = -0.3
xmax = 0.3
ymin = -10
ymax = 10
nx = 2
ny = 67
elem_type = ${elem}
[../]
[./plank_sidesets]
type = RenameBoundaryGenerator
input = plank
old_boundary_id = '0 1 2 3'
new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
[../]
[./plank_id]
type = SubdomainIDGenerator
input = plank_sidesets
subdomain_id = 1
[../]
[./block]
type = GeneratedMeshGenerator
dim = 2
xmin = 0.31
xmax = 0.91
ymin = 7.7
ymax = 8.5
nx = 3
ny = 4
elem_type = ${elem}
[../]
[./block_id]
type = SubdomainIDGenerator
input = block
subdomain_id = 2
[../]
[./combined]
type = MeshCollectionGenerator
inputs = 'plank_id block_id'
[../]
[./block_rename]
type = RenameBlockGenerator
input = combined
old_block_id = '1 2'
new_block_name = 'plank block'
[../]
[./block_sidesets]
type = SideSetsFromPointsGenerator
input = block_rename
points = '0.6 7.7 0
0.91 8.0 0
0.6 8.5 0
0.31 8.0 0'
new_boundary = 'block_bottom block_right block_top block_left'
[../]
[]
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Variables]
[./disp_x]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[./disp_y]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[]
[Modules/TensorMechanics/Master]
[./action]
strain = FINITE
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'plank block'
use_automatic_differentiation = true
[../]
[]
[Contact]
[./frictionless]
mesh = block_sidesets
master = plank_right
slave = block_left
formulation = mortar
system = constraint
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
preset = false
boundary = plank_left
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
preset = false
boundary = plank_bottom
value = 0.0
[../]
[./right_x]
type = ADFunctionDirichletBC
variable = disp_x
preset = false
boundary = block_right
function = '-0.04*sin(4*(t+1.5))+0.02'
[../]
[./right_y]
type = ADFunctionDirichletBC
variable = disp_y
preset = false
boundary = block_right
function = '-t'
[../]
[]
[Materials]
[./plank]
type = ComputeIsotropicElasticityTensor
block = 'plank'
poissons_ratio = 0.3
youngs_modulus = ${E_plank}
[../]
[./block]
type = ComputeIsotropicElasticityTensor
block = 'block'
poissons_ratio = 0.3
youngs_modulus = ${E_block}
[../]
[./stress]
type = ADComputeFiniteStrainElasticStress
block = 'plank block'
[../]
[]
[Executioner]
type = Transient
solve_type = 'NEWTON'
petsc_options = '-snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu 1e-5 NONZERO 1e-15'
end_time = 13.5
dt = 0.1
dtmin = 0.1
timestep_tolerance = 1e-6
line_search = 'contact'
[]
[Postprocessors]
[./nl_its]
type = NumNonlinearIterations
[../]
[./total_nl_its]
type = CumulativeValuePostprocessor
postprocessor = nl_its
[../]
[./l_its]
type = NumLinearIterations
[../]
[./total_l_its]
type = CumulativeValuePostprocessor
postprocessor = l_its
[../]
[./contact]
type = ContactDOFSetSize
variable = frictionless_normal_lm
subdomain = frictionless_slave_subdomain
[../]
[./avg_hydro]
type = ElementAverageValue
variable = hydrostatic_stress
block = 'block'
[../]
[./max_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
[../]
[./min_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
value_type = min
[../]
[./avg_vonmises]
type = ElementAverageValue
variable = vonmises_stress
block = 'block'
[../]
[./max_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
[../]
[./min_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
value_type = min
[../]
[]
[Outputs]
exodus = true
file_base = ${name}
[./comp]
type = CSV
show = 'contact'
[../]
[./out]
type = CSV
file_base = '${name}_out'
[../]
[]
[Debug]
show_var_residual_norms = true
[]
modules/porous_flow/examples/tutorial/08.i
# Unsaturated Darcy-Richards flow
[Mesh]
[annular]
type = AnnularMeshGenerator
nr = 10
rmin = 1.0
rmax = 10
growth_r = 1.4
nt = 4
dmin = 0
dmax = 90
[]
[./make3D]
input = annular
type = MeshExtruderGenerator
extrusion_vector = '0 0 12'
num_layers = 3
bottom_sideset = 'bottom'
top_sideset = 'top'
[../]
[./shift_down]
type = TransformGenerator
transform = TRANSLATE
vector_value = '0 0 -6'
input = make3D
[../]
[./aquifer]
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 0 -2'
top_right = '10 10 2'
input = shift_down
[../]
[./injection_area]
type = ParsedGenerateSideset
combinatorial_geometry = 'x*x+y*y<1.01'
included_subdomain_ids = 1
new_sideset_name = 'injection_area'
input = 'aquifer'
[../]
[./rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caps aquifer'
input = 'injection_area'
[../]
[]
[GlobalParams]
PorousFlowDictator = dictator
[]
[Variables]
[./porepressure]
[../]
[]
[PorousFlowUnsaturated]
porepressure = porepressure
coupling_type = Hydro
gravity = '0 0 0'
fp = the_simple_fluid
relative_permeability_exponent = 3
relative_permeability_type = Corey
residual_saturation = 0.1
van_genuchten_alpha = 1E-6
van_genuchten_m = 0.6
[]
[BCs]
[./production]
type = PorousFlowSink
variable = porepressure
fluid_phase = 0
flux_function = 1E-2
use_relperm = true
boundary = injection_area
[../]
[]
[Modules]
[./FluidProperties]
[./the_simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 2E9
viscosity = 1.0E-3
density0 = 1000.0
[../]
[../]
[]
[Materials]
[./porosity]
type = PorousFlowPorosity
porosity_zero = 0.1
[../]
[./permeability_aquifer]
type = PorousFlowPermeabilityConst
block = aquifer
permeability = '1E-14 0 0 0 1E-14 0 0 0 1E-14'
[../]
[./permeability_caps]
type = PorousFlowPermeabilityConst
block = caps
permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-16'
[../]
[]
[Preconditioning]
active = basic
[./basic]
type = SMP
full = true
petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = ' asm lu NONZERO 2'
[../]
[./preferred_but_might_not_be_installed]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
[../]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1E6
dt = 1E5
nl_abs_tol = 1E-7
[]
[Outputs]
exodus = true
[]
modules/porous_flow/examples/tutorial/11.i
# Two-phase borehole injection problem
[Mesh]
[annular]
type = AnnularMeshGenerator
nr = 10
rmin = 1.0
rmax = 10
growth_r = 1.4
nt = 4
dmin = 0
dmax = 90
[]
[./make3D]
input = annular
type = MeshExtruderGenerator
extrusion_vector = '0 0 12'
num_layers = 3
bottom_sideset = 'bottom'
top_sideset = 'top'
[../]
[./shift_down]
type = TransformGenerator
transform = TRANSLATE
vector_value = '0 0 -6'
input = make3D
[../]
[./aquifer]
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 0 -2'
top_right = '10 10 2'
input = shift_down
[../]
[./injection_area]
type = ParsedGenerateSideset
combinatorial_geometry = 'x*x+y*y<1.01'
included_subdomain_ids = 1
new_sideset_name = 'injection_area'
input = 'aquifer'
[../]
[./rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caps aquifer'
input = 'injection_area'
[../]
[]
[UserObjects]
[./dictator]
type = PorousFlowDictator
porous_flow_vars = 'pwater pgas T disp_x disp_y'
number_fluid_phases = 2
number_fluid_components = 2
[../]
[./pc]
type = PorousFlowCapillaryPressureVG
alpha = 1E-6
m = 0.6
[../]
[]
[GlobalParams]
displacements = 'disp_x disp_y disp_z'
gravity = '0 0 0'
biot_coefficient = 1.0
PorousFlowDictator = dictator
[]
[Variables]
[./pwater]
initial_condition = 20E6
[../]
[./pgas]
initial_condition = 20.1E6
[../]
[./T]
initial_condition = 330
scaling = 1E-5
[../]
[./disp_x]
scaling = 1E-5
[../]
[./disp_y]
scaling = 1E-5
[../]
[]
[Kernels]
[./mass_water_dot]
type = PorousFlowMassTimeDerivative
fluid_component = 0
use_displaced_mesh = false
variable = pwater
[../]
[./flux_water]
type = PorousFlowAdvectiveFlux
fluid_component = 0
use_displaced_mesh = false
variable = pwater
[../]
[./vol_strain_rate_water]
type = PorousFlowMassVolumetricExpansion
fluid_component = 0
use_displaced_mesh = false
variable = pwater
[../]
[./mass_co2_dot]
type = PorousFlowMassTimeDerivative
fluid_component = 1
use_displaced_mesh = false
variable = pgas
[../]
[./flux_co2]
type = PorousFlowAdvectiveFlux
fluid_component = 1
use_displaced_mesh = false
variable = pgas
[../]
[./vol_strain_rate_co2]
type = PorousFlowMassVolumetricExpansion
fluid_component = 1
use_displaced_mesh = false
variable = pgas
[../]
[./energy_dot]
type = PorousFlowEnergyTimeDerivative
use_displaced_mesh = false
variable = T
[../]
[./advection]
type = PorousFlowHeatAdvection
use_displaced_mesh = false
variable = T
[../]
[./conduction]
type = PorousFlowHeatConduction
use_displaced_mesh = false
variable = T
[../]
[./vol_strain_rate_heat]
type = PorousFlowHeatVolumetricExpansion
use_displaced_mesh = false
variable = T
[../]
[./grad_stress_x]
type = StressDivergenceTensors
temperature = T
variable = disp_x
thermal_eigenstrain_name = thermal_contribution
use_displaced_mesh = false
component = 0
[../]
[./poro_x]
type = PorousFlowEffectiveStressCoupling
variable = disp_x
use_displaced_mesh = false
component = 0
[../]
[./grad_stress_y]
type = StressDivergenceTensors
temperature = T
variable = disp_y
thermal_eigenstrain_name = thermal_contribution
use_displaced_mesh = false
component = 1
[../]
[./poro_y]
type = PorousFlowEffectiveStressCoupling
variable = disp_y
use_displaced_mesh = false
component = 1
[../]
[]
[AuxVariables]
[./disp_z]
[../]
[./effective_fluid_pressure]
family = MONOMIAL
order = CONSTANT
[../]
[./mass_frac_phase0_species0]
initial_condition = 1 # all water in phase=0
[../]
[./mass_frac_phase1_species0]
initial_condition = 0 # no water in phase=1
[../]
[./sgas]
family = MONOMIAL
order = CONSTANT
[../]
[./swater]
family = MONOMIAL
order = CONSTANT
[../]
[./stress_rr]
family = MONOMIAL
order = CONSTANT
[../]
[./stress_tt]
family = MONOMIAL
order = CONSTANT
[../]
[./stress_zz]
family = MONOMIAL
order = CONSTANT
[../]
[./porosity]
family = MONOMIAL
order = CONSTANT
[../]
[]
[AuxKernels]
[./effective_fluid_pressure]
type = ParsedAux
args = 'pwater pgas swater sgas'
function = 'pwater * swater + pgas * sgas'
variable = effective_fluid_pressure
[../]
[./swater]
type = PorousFlowPropertyAux
variable = swater
property = saturation
phase = 0
execute_on = timestep_end
[../]
[./sgas]
type = PorousFlowPropertyAux
variable = sgas
property = saturation
phase = 1
execute_on = timestep_end
[../]
[./stress_rr]
type = RankTwoScalarAux
variable = stress_rr
rank_two_tensor = stress
scalar_type = RadialStress
point1 = '0 0 0'
point2 = '0 0 1'
execute_on = timestep_end
[../]
[./stress_tt]
type = RankTwoScalarAux
variable = stress_tt
rank_two_tensor = stress
scalar_type = HoopStress
point1 = '0 0 0'
point2 = '0 0 1'
execute_on = timestep_end
[../]
[./stress_zz]
type = RankTwoAux
variable = stress_zz
rank_two_tensor = stress
index_i = 2
index_j = 2
execute_on = timestep_end
[../]
[./porosity]
type = PorousFlowPropertyAux
variable = porosity
property = porosity
execute_on = timestep_end
[../]
[]
[BCs]
[./roller_tmax]
type = DirichletBC
variable = disp_x
value = 0
boundary = dmax
[../]
[./roller_tmin]
type = DirichletBC
variable = disp_y
value = 0
boundary = dmin
[../]
[./pinned_top_bottom_x]
type = DirichletBC
variable = disp_x
value = 0
boundary = 'top bottom'
[../]
[./pinned_top_bottom_y]
type = DirichletBC
variable = disp_y
value = 0
boundary = 'top bottom'
[../]
[./cavity_pressure_x]
type = Pressure
boundary = injection_area
variable = disp_x
component = 0
postprocessor = constrained_effective_fluid_pressure_at_wellbore
use_displaced_mesh = false
[../]
[./cavity_pressure_y]
type = Pressure
boundary = injection_area
variable = disp_y
component = 1
postprocessor = constrained_effective_fluid_pressure_at_wellbore
use_displaced_mesh = false
[../]
[./cold_co2]
type = DirichletBC
boundary = injection_area
variable = T
value = 290 # injection temperature
use_displaced_mesh = false
[../]
[./constant_co2_injection]
type = PorousFlowSink
boundary = injection_area
variable = pgas
fluid_phase = 1
flux_function = -1E-4
use_displaced_mesh = false
[../]
[./outer_water_removal]
type = PorousFlowPiecewiseLinearSink
boundary = rmax
variable = pwater
fluid_phase = 0
pt_vals = '0 1E9'
multipliers = '0 1E8'
PT_shift = 20E6
use_mobility = true
use_relperm = true
use_displaced_mesh = false
[../]
[./outer_co2_removal]
type = PorousFlowPiecewiseLinearSink
boundary = rmax
variable = pgas
fluid_phase = 1
pt_vals = '0 1E9'
multipliers = '0 1E8'
PT_shift = 20.1E6
use_mobility = true
use_relperm = true
use_displaced_mesh = false
[../]
[]
[Modules]
[./FluidProperties]
[./true_water]
type = Water97FluidProperties
[../]
[./tabulated_water]
type = TabulatedFluidProperties
fp = true_water
temperature_min = 275
pressure_max = 1E8
interpolated_properties = 'density viscosity enthalpy internal_energy'
fluid_property_file = water97_tabulated_11.csv
[../]
[./true_co2]
type = CO2FluidProperties
[../]
[./tabulated_co2]
type = TabulatedFluidProperties
fp = true_co2
temperature_min = 275
pressure_max = 1E8
interpolated_properties = 'density viscosity enthalpy internal_energy'
fluid_property_file = co2_tabulated_11.csv
[../]
[../]
[]
[Materials]
[./temperature]
type = PorousFlowTemperature
temperature = T
[../]
[./saturation_calculator]
type = PorousFlow2PhasePP
phase0_porepressure = pwater
phase1_porepressure = pgas
capillary_pressure = pc
[../]
[./massfrac]
type = PorousFlowMassFraction
mass_fraction_vars = 'mass_frac_phase0_species0 mass_frac_phase1_species0'
[../]
[./water]
type = PorousFlowSingleComponentFluid
fp = tabulated_water
phase = 0
[../]
[./co2]
type = PorousFlowSingleComponentFluid
fp = tabulated_co2
phase = 1
[../]
[./relperm_water]
type = PorousFlowRelativePermeabilityCorey
n = 4
s_res = 0.1
sum_s_res = 0.2
phase = 0
[../]
[./relperm_co2]
type = PorousFlowRelativePermeabilityBC
nw_phase = true
lambda = 2
s_res = 0.1
sum_s_res = 0.2
phase = 1
[../]
[./porosity]
type = PorousFlowPorosity
fluid = true
mechanical = true
thermal = true
porosity_zero = 0.1
reference_temperature = 330
reference_porepressure = 20E6
thermal_expansion_coeff = 15E-6 # volumetric
solid_bulk = 8E9 # unimportant since biot = 1
[../]
[./permeability_aquifer]
type = PorousFlowPermeabilityKozenyCarman
block = aquifer
poroperm_function = kozeny_carman_phi0
phi0 = 0.1
n = 2
m = 2
k0 = 1E-12
[../]
[./permeability_caps]
type = PorousFlowPermeabilityKozenyCarman
block = caps
poroperm_function = kozeny_carman_phi0
phi0 = 0.1
n = 2
m = 2
k0 = 1E-15
k_anisotropy = '1 0 0 0 1 0 0 0 0.1'
[../]
[./rock_thermal_conductivity]
type = PorousFlowThermalConductivityIdeal
dry_thermal_conductivity = '2 0 0 0 2 0 0 0 2'
[../]
[./rock_internal_energy]
type = PorousFlowMatrixInternalEnergy
specific_heat_capacity = 1100
density = 2300
[../]
[./elasticity_tensor]
type = ComputeIsotropicElasticityTensor
youngs_modulus = 5E9
poissons_ratio = 0.0
[../]
[./strain]
type = ComputeSmallStrain
eigenstrain_names = 'thermal_contribution initial_stress'
[../]
[./thermal_contribution]
type = ComputeThermalExpansionEigenstrain
temperature = T
thermal_expansion_coeff = 5E-6 # this is the linear thermal expansion coefficient
eigenstrain_name = thermal_contribution
stress_free_temperature = 330
[../]
[./initial_strain]
type = ComputeEigenstrainFromInitialStress
initial_stress = '20E6 0 0 0 20E6 0 0 0 20E6'
eigenstrain_name = initial_stress
[../]
[./stress]
type = ComputeLinearElasticStress
[../]
[./effective_fluid_pressure]
type = PorousFlowEffectiveFluidPressure
[../]
[./volumetric_strain]
type = PorousFlowVolumetricStrain
[../]
[]
[Postprocessors]
[./effective_fluid_pressure_at_wellbore]
type = PointValue
variable = effective_fluid_pressure
point = '1 0 0'
execute_on = timestep_begin
use_displaced_mesh = false
[../]
[./constrained_effective_fluid_pressure_at_wellbore]
type = FunctionValuePostprocessor
function = constrain_effective_fluid_pressure
execute_on = timestep_begin
[../]
[]
[Functions]
[./constrain_effective_fluid_pressure]
type = ParsedFunction
vars = effective_fluid_pressure_at_wellbore
vals = effective_fluid_pressure_at_wellbore
value = 'max(effective_fluid_pressure_at_wellbore, 20E6)'
[../]
[]
[Preconditioning]
active = basic
[./basic]
type = SMP
full = true
petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = ' asm lu NONZERO 2'
[../]
[./preferred_but_might_not_be_installed]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
[../]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1E3
[./TimeStepper]
type = IterationAdaptiveDT
dt = 1E3
growth_factor = 1.2
optimal_iterations = 10
[../]
nl_abs_tol = 1E-7
[]
[Outputs]
exodus = true
[]
modules/porous_flow/examples/tutorial/06.i
# Darcy flow with a tracer
[Mesh]
[annular]
type = AnnularMeshGenerator
nr = 10
rmin = 1.0
rmax = 10
growth_r = 1.4
nt = 4
dmin = 0
dmax = 90
[]
[./make3D]
type = MeshExtruderGenerator
extrusion_vector = '0 0 12'
num_layers = 3
bottom_sideset = 'bottom'
top_sideset = 'top'
input = annular
[../]
[./shift_down]
type = TransformGenerator
transform = TRANSLATE
vector_value = '0 0 -6'
input = make3D
[../]
[./aquifer]
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 0 -2'
top_right = '10 10 2'
input = shift_down
[../]
[./injection_area]
type = ParsedGenerateSideset
combinatorial_geometry = 'x*x+y*y<1.01'
included_subdomain_ids = 1
new_sideset_name = 'injection_area'
input = 'aquifer'
[../]
[./rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caps aquifer'
input = 'injection_area'
[../]
[]
[GlobalParams]
PorousFlowDictator = dictator
[]
[Variables]
[./porepressure]
[../]
[./tracer_concentration]
[../]
[]
[ICs]
[./tracer_concentration]
type = FunctionIC
function = '0.5*if(x*x+y*y<1.01,1,0)'
variable = tracer_concentration
[../]
[]
[PorousFlowFullySaturated]
porepressure = porepressure
coupling_type = Hydro
gravity = '0 0 0'
fp = the_simple_fluid
mass_fraction_vars = tracer_concentration
[]
[BCs]
[./constant_injection_porepressure]
type = DirichletBC
variable = porepressure
value = 1E6
boundary = injection_area
[../]
[./constant_outer_porepressure]
type = DirichletBC
variable = porepressure
value = 0
boundary = rmax
[../]
[./injected_tracer]
type = DirichletBC
variable = tracer_concentration
value = 0.5
boundary = injection_area
[../]
[]
[Modules]
[./FluidProperties]
[./the_simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 2E9
viscosity = 1.0E-3
density0 = 1000.0
[../]
[../]
[]
[Materials]
[./porosity]
type = PorousFlowPorosity
porosity_zero = 0.1
[../]
[./permeability_aquifer]
type = PorousFlowPermeabilityConst
block = aquifer
permeability = '1E-14 0 0 0 1E-14 0 0 0 1E-14'
[../]
[./permeability_caps]
type = PorousFlowPermeabilityConst
block = caps
permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-16'
[../]
[]
[Preconditioning]
active = basic
[./basic]
type = SMP
full = true
petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = ' asm lu NONZERO 2'
[../]
[./preferred_but_might_not_be_installed]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
[../]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1E6
dt = 1E5
nl_rel_tol = 1E-14
[]
[Outputs]
exodus = true
[]
modules/combined/test/tests/mortar_tm/2d/ad_frictionless_fir/finite.i
E_block = 1e7
E_plank = 1e7
elem = QUAD4
order = FIRST
name = 'finite'
[Mesh]
patch_size = 80
patch_update_strategy = auto
[./plank]
type = GeneratedMeshGenerator
dim = 2
xmin = -0.3
xmax = 0.3
ymin = -10
ymax = 10
nx = 2
ny = 67
elem_type = ${elem}
[../]
[./plank_sidesets]
type = RenameBoundaryGenerator
input = plank
old_boundary_id = '0 1 2 3'
new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
[../]
[./plank_id]
type = SubdomainIDGenerator
input = plank_sidesets
subdomain_id = 1
[../]
[./block]
type = GeneratedMeshGenerator
dim = 2
xmin = 0.31
xmax = 0.91
ymin = 7.7
ymax = 8.5
nx = 3
ny = 4
elem_type = ${elem}
[../]
[./block_id]
type = SubdomainIDGenerator
input = block
subdomain_id = 2
[../]
[./combined]
type = MeshCollectionGenerator
inputs = 'plank_id block_id'
[../]
[./block_rename]
type = RenameBlockGenerator
input = combined
old_block_id = '1 2'
new_block_name = 'plank block'
[../]
[./block_sidesets]
type = SideSetsFromPointsGenerator
input = block_rename
points = '0.6 7.7 0
0.91 8.0 0
0.6 8.5 0
0.31 8.0 0'
new_boundary = 'block_bottom block_right block_top block_left'
[../]
[]
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Variables]
[./disp_x]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[./disp_y]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[]
[Modules/TensorMechanics/Master]
[./action]
strain = FINITE
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'plank block'
use_automatic_differentiation = true
[../]
[]
[Contact]
[./frictionless]
mesh = block_sidesets
master = plank_right
slave = block_left
formulation = mortar
system = constraint
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
boundary = plank_left
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
boundary = plank_bottom
value = 0.0
[../]
[./right_x]
type = ADFunctionDirichletBC
variable = disp_x
boundary = block_right
function = '-0.04*sin(4*(t+1.5))+0.02'
[../]
[./right_y]
type = ADFunctionDirichletBC
variable = disp_y
boundary = block_right
function = '-t'
[../]
[]
[Materials]
[./plank]
type = ComputeIsotropicElasticityTensor
block = 'plank'
poissons_ratio = 0.3
youngs_modulus = ${E_plank}
[../]
[./block]
type = ComputeIsotropicElasticityTensor
block = 'block'
poissons_ratio = 0.3
youngs_modulus = ${E_block}
[../]
[./stress]
type = ADComputeFiniteStrainElasticStress
block = 'plank block'
[../]
[]
[Executioner]
type = Transient
solve_type = 'NEWTON'
petsc_options = '-snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu 1e-5 NONZERO 1e-15'
end_time = 13.5
dt = 0.1
dtmin = 0.1
timestep_tolerance = 1e-6
line_search = 'contact'
[]
[Postprocessors]
[./nl_its]
type = NumNonlinearIterations
[../]
[./total_nl_its]
type = CumulativeValuePostprocessor
postprocessor = nl_its
[../]
[./l_its]
type = NumLinearIterations
[../]
[./total_l_its]
type = CumulativeValuePostprocessor
postprocessor = l_its
[../]
[./contact]
type = ContactDOFSetSize
variable = frictionless_normal_lm
subdomain = frictionless_slave_subdomain
[../]
[./avg_hydro]
type = ElementAverageValue
variable = hydrostatic_stress
block = 'block'
[../]
[./max_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
[../]
[./min_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
value_type = min
[../]
[./avg_vonmises]
type = ElementAverageValue
variable = vonmises_stress
block = 'block'
[../]
[./max_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
[../]
[./min_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
value_type = min
[../]
[]
[Outputs]
exodus = true
file_base = ${name}
[./comp]
type = CSV
show = 'contact'
[../]
[./out]
type = CSV
file_base = '${name}_out'
[../]
[]
[Debug]
show_var_residual_norms = true
[]
modules/heat_conduction/test/tests/gray_lambert_radiator/coupled_heat_conduction.i
[Problem]
kernel_coverage_check = false
[]
[Mesh]
type = MeshGeneratorMesh
[./cartesian]
type = CartesianMeshGenerator
dim = 2
dx = '1 1 1'
ix = '2 2 2'
dy = '5'
iy = '10'
subdomain_id = '1 2 3'
[../]
[./break_sides]
type = BreakBoundaryOnSubdomainGenerator
boundaries = 'bottom top'
input = cartesian
[../]
[./left_interior]
type = SideSetsBetweenSubdomainsGenerator
master_block = 1
paired_block = 2
new_boundary = left_interior
input = break_sides
[../]
[./right_interior]
type = SideSetsBetweenSubdomainsGenerator
master_block = 3
paired_block = 2
new_boundary = right_interior
input = left_interior
[../]
[./rename]
type = RenameBlockGenerator
input = right_interior
old_block_id = '1 2 3'
new_block_id = '1 4 3'
[../]
[]
[Variables]
[./temperature]
initial_condition = 300
block = '1 3'
[../]
[]
[Kernels]
[./heat_conduction]
type = HeatConduction
variable = temperature
diffusion_coefficient = 1
block = '1 3'
[../]
[]
[UserObjects]
[./cavity_radiation]
type = ConstantViewFactorSurfaceRadiation
boundary = 'left_interior right_interior bottom_to_2 top_to_2'
temperature = temperature
emissivity = '0.8 0.8 0.8 0.8'
adiabatic_boundary = 'bottom_to_2 top_to_2'
# these view factors are made up to exactly balance energy
# transfer through the cavity
view_factors = '0 0.8 0.1 0.1;
0.8 0 0.1 0.1;
0.45 0.45 0 0.1;
0.45 0.45 0.1 0'
execute_on = 'INITIAL LINEAR TIMESTEP_END'
[../]
[]
[BCs]
[./bottom_left]
type = DirichletBC
preset = false
variable = temperature
boundary = bottom_to_1
value = 1500
[../]
[./top_right]
type = DirichletBC
preset = false
variable = temperature
boundary = top_to_3
value = 300
[../]
[./radiation]
type = GrayLambertNeumannBC
variable = temperature
reconstruct_emission = false
surface_radiation_object_name = cavity_radiation
boundary = 'left_interior right_interior'
[../]
[]
[Postprocessors]
[./qdot_left]
type = GrayLambertSurfaceRadiationPP
boundary = left_interior
surface_radiation_object_name = cavity_radiation
return_type = HEAT_FLUX_DENSITY
[../]
[./qdot_right]
type = GrayLambertSurfaceRadiationPP
boundary = right_interior
surface_radiation_object_name = cavity_radiation
return_type = HEAT_FLUX_DENSITY
[../]
[./qdot_top]
type = GrayLambertSurfaceRadiationPP
boundary = top_to_2
surface_radiation_object_name = cavity_radiation
return_type = HEAT_FLUX_DENSITY
[../]
[./qdot_bottom]
type = GrayLambertSurfaceRadiationPP
boundary = bottom_to_2
surface_radiation_object_name = cavity_radiation
return_type = HEAT_FLUX_DENSITY
[../]
[]
[Executioner]
type = Steady
[]
[Outputs]
exodus = true
[]
modules/porous_flow/test/tests/actions/basicthm_thm.i
# PorousFlowBasicTHM action with coupling_type = ThermoHydroMechanicalGenerator
[Mesh]
[gen]
type = GeneratedMeshGenerator
dim = 2
nx = 10
ny = 3
xmax = 10
ymax = 3
[]
[./aquifer]
input = gen
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 1 0'
top_right = '10 2 0'
[../]
[./injection_area]
type = SideSetsAroundSubdomainGenerator
block = 1
new_boundary = 'injection_area'
normal = '-1 0 0'
input = 'aquifer'
[../]
[./outflow_area]
type = SideSetsAroundSubdomainGenerator
block = 1
new_boundary = 'outflow_area'
normal = '1 0 0'
input = 'injection_area'
[../]
[./rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caprock aquifer'
input = 'outflow_area'
[../]
[]
[GlobalParams]
PorousFlowDictator = dictator
displacements = 'disp_x disp_y'
biot_coefficient = 1.0
[]
[Variables]
[./porepressure]
initial_condition = 1e6
[../]
[./temperature]
initial_condition = 293
scaling = 1e-6
[../]
[./disp_x]
scaling = 1e-6
[../]
[./disp_y]
scaling = 1e-6
[../]
[]
[PorousFlowBasicTHM]
porepressure = porepressure
temperature = temperature
coupling_type = ThermoHydroMechanical
gravity = '0 0 0'
fp = simple_fluid
thermal_eigenstrain_name = thermal_contribution
use_displaced_mesh = false
add_stress_aux = false
[]
[BCs]
[./constant_injection_porepressure]
type = DirichletBC
variable = porepressure
value = 1.5e6
boundary = injection_area
[../]
[./constant_injection_temperature]
type = DirichletBC
variable = temperature
value = 313
boundary = injection_area
[../]
[./constant_outflow_porepressure]
type = PorousFlowPiecewiseLinearSink
variable = porepressure
boundary = outflow_area
pt_vals = '0 1e9'
multipliers = '0 1e9'
flux_function = 1e-6
PT_shift = 1e6
[../]
[./constant_outflow_temperature]
type = DirichletBC
variable = temperature
value = 293
boundary = outflow_area
[../]
[./top_bottom]
type = DirichletBC
variable = disp_y
value = 0
boundary = 'top bottom'
[../]
[./right]
type = DirichletBC
variable = disp_x
value = 0
boundary = right
[../]
[]
[Modules]
[./FluidProperties]
[./simple_fluid]
type = SimpleFluidProperties
[../]
[../]
[]
[Materials]
[./porosity]
type = PorousFlowPorosity
porosity_zero = 0.1
[../]
[./biot_modulus]
type = PorousFlowConstantBiotModulus
biot_coefficient = 0.8
solid_bulk_compliance = 2e-7
fluid_bulk_modulus = 1e7
[../]
[./permeability_aquifer]
type = PorousFlowPermeabilityConst
block = aquifer
permeability = '1e-13 0 0 0 1e-13 0 0 0 1e-13'
[../]
[./permeability_caprock]
type = PorousFlowPermeabilityConst
block = caprock
permeability = '1e-15 0 0 0 1e-15 0 0 0 1e-15'
[../]
[./thermal_expansion]
type = PorousFlowConstantThermalExpansionCoefficient
drained_coefficient = 0.003
fluid_coefficient = 0.0002
[../]
[./rock_internal_energy]
type = PorousFlowMatrixInternalEnergy
density = 2500.0
specific_heat_capacity = 1200.0
[../]
[./thermal_conductivity]
type = PorousFlowThermalConductivityIdeal
dry_thermal_conductivity = '10 0 0 0 10 0 0 0 10'
block = 'caprock aquifer'
[../]
[./elasticity_tensor]
type = ComputeIsotropicElasticityTensor
youngs_modulus = 5e9
poissons_ratio = 0.0
[../]
[./strain]
type = ComputeSmallStrain
eigenstrain_names = thermal_contribution
[../]
[./thermal_contribution]
type = ComputeThermalExpansionEigenstrain
temperature = temperature
thermal_expansion_coeff = 0.001
eigenstrain_name = thermal_contribution
stress_free_temperature = 293
[../]
[./stress]
type = ComputeLinearElasticStress
[../]
[]
[Preconditioning]
[./basic]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1e4
dt = 1e3
nl_abs_tol = 1e-12
nl_rel_tol = 1E-10
[]
[Outputs]
exodus = true
[]
modules/porous_flow/test/tests/actions/basicthm_h.i
# PorousFlowBasicTHM action with coupling_type = HydroGenerator
# (no thermal or mechanical effects)
[Mesh]
[gen]
type = GeneratedMeshGenerator
dim = 2
nx = 10
ny = 3
xmax = 10
ymax = 3
[]
[./aquifer]
input = gen
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 1 0'
top_right = '10 2 0'
[../]
[./injection_area]
type = SideSetsAroundSubdomainGenerator
block = 1
new_boundary = 'injection_area'
normal = '-1 0 0'
input = 'aquifer'
[../]
[./outflow_area]
type = SideSetsAroundSubdomainGenerator
block = 1
new_boundary = 'outflow_area'
normal = '1 0 0'
input = 'injection_area'
[../]
[./rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caprock aquifer'
input = 'outflow_area'
[../]
[]
[GlobalParams]
PorousFlowDictator = dictator
[]
[Variables]
[./porepressure]
initial_condition = 1e6
[../]
[]
[AuxVariables]
[./temperature]
initial_condition = 293
[../]
[]
[PorousFlowBasicTHM]
porepressure = porepressure
temperature = temperature
coupling_type = Hydro
gravity = '0 0 0'
fp = simple_fluid
[]
[BCs]
[./constant_injection_porepressure]
type = DirichletBC
variable = porepressure
value = 1.5e6
boundary = injection_area
[../]
[./constant_outflow_porepressure]
type = PorousFlowPiecewiseLinearSink
variable = porepressure
boundary = outflow_area
pt_vals = '0 1e9'
multipliers = '0 1e9'
flux_function = 1e-6
PT_shift = 1e6
[../]
[]
[Modules]
[./FluidProperties]
[./simple_fluid]
type = SimpleFluidProperties
[../]
[../]
[]
[Materials]
[./porosity]
type = PorousFlowPorosity
porosity_zero = 0.1
[../]
[./biot_modulus]
type = PorousFlowConstantBiotModulus
biot_coefficient = 0.8
solid_bulk_compliance = 2e-7
fluid_bulk_modulus = 1e7
[../]
[./permeability_aquifer]
type = PorousFlowPermeabilityConst
block = aquifer
permeability = '1e-13 0 0 0 1e-13 0 0 0 1e-13'
[../]
[./permeability_caprock]
type = PorousFlowPermeabilityConst
block = caprock
permeability = '1e-15 0 0 0 1e-15 0 0 0 1e-15'
[../]
[]
[Preconditioning]
[./basic]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1e4
dt = 1e3
nl_abs_tol = 1e-15
nl_rel_tol = 1E-14
[]
[Outputs]
exodus = true
[]
modules/combined/test/tests/mortar_tm/2d/frictionless_first/finite_noaction.i
E_block = 1e7
E_plank = 1e7
elem = QUAD4
order = FIRST
name = 'finite_noaction'
[Mesh]
patch_size = 80
patch_update_strategy = auto
[./plank]
type = GeneratedMeshGenerator
dim = 2
xmin = -0.3
xmax = 0.3
ymin = -10
ymax = 10
nx = 2
ny = 67
elem_type = ${elem}
[../]
[./plank_sidesets]
type = RenameBoundaryGenerator
input = plank
old_boundary_id = '0 1 2 3'
new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
[../]
[./plank_id]
type = SubdomainIDGenerator
input = plank_sidesets
subdomain_id = 1
[../]
[./block]
type = GeneratedMeshGenerator
dim = 2
xmin = 0.31
xmax = 0.91
ymin = 7.7
ymax = 8.5
nx = 3
ny = 4
elem_type = ${elem}
[../]
[./block_id]
type = SubdomainIDGenerator
input = block
subdomain_id = 2
[../]
[./combined]
type = MeshCollectionGenerator
inputs = 'plank_id block_id'
[../]
[./block_rename]
type = RenameBlockGenerator
input = combined
old_block_id = '1 2'
new_block_name = 'plank block'
[../]
[./block_sidesets]
type = SideSetsFromPointsGenerator
input = block_rename
points = '0.6 7.7 0
0.91 8.0 0
0.6 8.5 0
0.31 8.0 0'
new_boundary = 'block_bottom block_right block_top block_left'
[../]
[./slave]
input = block_sidesets
type = LowerDBlockFromSidesetGenerator
sidesets = 'block_left'
new_block_id = '30'
new_block_name = 'frictionless_slave_subdomain'
[../]
[./master]
input = slave
type = LowerDBlockFromSidesetGenerator
sidesets = 'plank_right'
new_block_id = '20'
new_block_name = 'frictionless_master_subdomain'
[../]
[]
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Variables]
[./disp_x]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[./disp_y]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[./frictionless_normal_lm]
order = ${order}
block = 'frictionless_slave_subdomain'
[../]
[]
[Modules/TensorMechanics/Master]
[./action]
strain = FINITE
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'plank block'
[../]
[]
[Constraints]
[./lm]
type = NormalNodalLMMechanicalContact
slave = block_left
master = plank_right
variable = frictionless_normal_lm
master_variable = disp_x
disp_y = disp_y
ncp_function_type = min
use_displaced_mesh = true
[../]
[./normal_x]
type = NormalMortarMechanicalContact
master_boundary = plank_right
slave_boundary = block_left
master_subdomain = frictionless_master_subdomain
slave_subdomain = frictionless_slave_subdomain
variable = frictionless_normal_lm
slave_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = false
[../]
[./normal_y]
type = NormalMortarMechanicalContact
master_boundary = plank_right
slave_boundary = block_left
master_subdomain = frictionless_master_subdomain
slave_subdomain = frictionless_slave_subdomain
variable = frictionless_normal_lm
slave_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = false
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
boundary = plank_left
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
boundary = plank_bottom
value = 0.0
[../]
[./right_x]
type = FunctionDirichletBC
variable = disp_x
boundary = block_right
function = '-0.04*sin(4*(t+1.5))+0.02'
[../]
[./right_y]
type = FunctionDirichletBC
variable = disp_y
boundary = block_right
function = '-t'
[../]
[]
[Materials]
[./plank]
type = ComputeIsotropicElasticityTensor
block = 'plank'
poissons_ratio = 0.3
youngs_modulus = ${E_plank}
[../]
[./block]
type = ComputeIsotropicElasticityTensor
block = 'block'
poissons_ratio = 0.3
youngs_modulus = ${E_block}
[../]
[./stress]
type = ComputeFiniteStrainElasticStress
block = 'plank block'
[../]
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu 1e-5 NONZERO 1e-15'
end_time = 13.5
dt = 0.1
dtmin = 0.1
timestep_tolerance = 1e-6
line_search = 'contact'
[]
[Postprocessors]
[./nl_its]
type = NumNonlinearIterations
[../]
[./total_nl_its]
type = CumulativeValuePostprocessor
postprocessor = nl_its
[../]
[./l_its]
type = NumLinearIterations
[../]
[./total_l_its]
type = CumulativeValuePostprocessor
postprocessor = l_its
[../]
[./contact]
type = ContactDOFSetSize
variable = frictionless_normal_lm
subdomain = frictionless_slave_subdomain
[../]
[./avg_hydro]
type = ElementAverageValue
variable = hydrostatic_stress
block = 'block'
[../]
[./max_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
[../]
[./min_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
value_type = min
[../]
[./avg_vonmises]
type = ElementAverageValue
variable = vonmises_stress
block = 'block'
[../]
[./max_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
[../]
[./min_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
value_type = min
[../]
[]
[Outputs]
exodus = true
file_base = ${name}
[./comp]
type = CSV
show = 'contact'
[../]
[./out]
type = CSV
file_base = '${name}_out'
[../]
[]
[Debug]
show_var_residual_norms = true
[]
modules/porous_flow/examples/tutorial/11_2D.i
# Two-phase borehole injection problem in RZ coordinates
[Mesh]
[gen]
type = GeneratedMeshGenerator
dim = 2
nx = 10
xmin = 1.0
xmax = 10
bias_x = 1.4
ny = 3
ymin = -6
ymax = 6
[]
[./aquifer]
input = gen
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 -2 0'
top_right = '10 2 0'
[../]
[./injection_area]
type = ParsedGenerateSideset
combinatorial_geometry = 'x<1.0001'
included_subdomain_ids = 1
new_sideset_name = 'injection_area'
input = 'aquifer'
[../]
[./rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caps aquifer'
input = 'injection_area'
[../]
[]
[Problem]
coord_type = RZ
[]
[UserObjects]
[./dictator]
type = PorousFlowDictator
porous_flow_vars = 'pwater pgas T disp_r'
number_fluid_phases = 2
number_fluid_components = 2
[../]
[./pc]
type = PorousFlowCapillaryPressureVG
alpha = 1E-6
m = 0.6
[../]
[]
[GlobalParams]
displacements = 'disp_r disp_z'
gravity = '0 0 0'
biot_coefficient = 1.0
PorousFlowDictator = dictator
[]
[Variables]
[./pwater]
initial_condition = 20E6
[../]
[./pgas]
initial_condition = 20.1E6
[../]
[./T]
initial_condition = 330
scaling = 1E-5
[../]
[./disp_r]
scaling = 1E-5
[../]
[]
[Kernels]
[./mass_water_dot]
type = PorousFlowMassTimeDerivative
fluid_component = 0
use_displaced_mesh = false
variable = pwater
[../]
[./flux_water]
type = PorousFlowAdvectiveFlux
fluid_component = 0
use_displaced_mesh = false
variable = pwater
[../]
[./vol_strain_rate_water]
type = PorousFlowMassVolumetricExpansion
fluid_component = 0
use_displaced_mesh = false
variable = pwater
[../]
[./mass_co2_dot]
type = PorousFlowMassTimeDerivative
fluid_component = 1
use_displaced_mesh = false
variable = pgas
[../]
[./flux_co2]
type = PorousFlowAdvectiveFlux
fluid_component = 1
use_displaced_mesh = false
variable = pgas
[../]
[./vol_strain_rate_co2]
type = PorousFlowMassVolumetricExpansion
fluid_component = 1
use_displaced_mesh = false
variable = pgas
[../]
[./energy_dot]
type = PorousFlowEnergyTimeDerivative
use_displaced_mesh = false
variable = T
[../]
[./advection]
type = PorousFlowHeatAdvection
use_displaced_mesh = false
variable = T
[../]
[./conduction]
type = PorousFlowHeatConduction
use_displaced_mesh = false
variable = T
[../]
[./vol_strain_rate_heat]
type = PorousFlowHeatVolumetricExpansion
use_displaced_mesh = false
variable = T
[../]
[./grad_stress_r]
type = StressDivergenceRZTensors
temperature = T
variable = disp_r
thermal_eigenstrain_name = thermal_contribution
use_displaced_mesh = false
component = 0
[../]
[./poro_r]
type = PorousFlowEffectiveStressCoupling
variable = disp_r
use_displaced_mesh = false
component = 0
[../]
[]
[AuxVariables]
[./disp_z]
[../]
[./effective_fluid_pressure]
family = MONOMIAL
order = CONSTANT
[../]
[./mass_frac_phase0_species0]
initial_condition = 1 # all water in phase=0
[../]
[./mass_frac_phase1_species0]
initial_condition = 0 # no water in phase=1
[../]
[./sgas]
family = MONOMIAL
order = CONSTANT
[../]
[./swater]
family = MONOMIAL
order = CONSTANT
[../]
[./stress_rr]
family = MONOMIAL
order = CONSTANT
[../]
[./stress_tt]
family = MONOMIAL
order = CONSTANT
[../]
[./stress_zz]
family = MONOMIAL
order = CONSTANT
[../]
[./porosity]
family = MONOMIAL
order = CONSTANT
[../]
[]
[AuxKernels]
[./effective_fluid_pressure]
type = ParsedAux
args = 'pwater pgas swater sgas'
function = 'pwater * swater + pgas * sgas'
variable = effective_fluid_pressure
[../]
[./swater]
type = PorousFlowPropertyAux
variable = swater
property = saturation
phase = 0
execute_on = timestep_end
[../]
[./sgas]
type = PorousFlowPropertyAux
variable = sgas
property = saturation
phase = 1
execute_on = timestep_end
[../]
[./stress_rr_aux]
type = RankTwoAux
variable = stress_rr
rank_two_tensor = stress
index_i = 0
index_j = 0
[../]
[./stress_tt]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_tt
index_i = 2
index_j = 2
[../]
[./stress_zz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zz
index_i = 1
index_j = 1
[../]
[./porosity]
type = PorousFlowPropertyAux
variable = porosity
property = porosity
execute_on = timestep_end
[../]
[]
[BCs]
[./pinned_top_bottom_r]
type = DirichletBC
variable = disp_r
value = 0
boundary = 'top bottom'
[../]
[./cavity_pressure_r]
type = Pressure
boundary = injection_area
variable = disp_r
component = 0
postprocessor = constrained_effective_fluid_pressure_at_wellbore
use_displaced_mesh = false
[../]
[./cold_co2]
type = DirichletBC
boundary = injection_area
variable = T
value = 290 # injection temperature
use_displaced_mesh = false
[../]
[./constant_co2_injection]
type = PorousFlowSink
boundary = injection_area
variable = pgas
fluid_phase = 1
flux_function = -1E-4
use_displaced_mesh = false
[../]
[./outer_water_removal]
type = PorousFlowPiecewiseLinearSink
boundary = right
variable = pwater
fluid_phase = 0
pt_vals = '0 1E9'
multipliers = '0 1E8'
PT_shift = 20E6
use_mobility = true
use_relperm = true
use_displaced_mesh = false
[../]
[./outer_co2_removal]
type = PorousFlowPiecewiseLinearSink
boundary = right
variable = pgas
fluid_phase = 1
pt_vals = '0 1E9'
multipliers = '0 1E8'
PT_shift = 20.1E6
use_mobility = true
use_relperm = true
use_displaced_mesh = false
[../]
[]
[Modules]
[./FluidProperties]
[./true_water]
type = Water97FluidProperties
[../]
[./tabulated_water]
type = TabulatedFluidProperties
fp = true_water
temperature_min = 275
pressure_max = 1E8
fluid_property_file = water97_tabulated_11.csv
[../]
[./true_co2]
type = CO2FluidProperties
[../]
[./tabulated_co2]
type = TabulatedFluidProperties
fp = true_co2
temperature_min = 275
pressure_max = 1E8
fluid_property_file = co2_tabulated_11.csv
[../]
[../]
[]
[Materials]
[./temperature]
type = PorousFlowTemperature
temperature = T
[../]
[./saturation_calculator]
type = PorousFlow2PhasePP
phase0_porepressure = pwater
phase1_porepressure = pgas
capillary_pressure = pc
[../]
[./massfrac]
type = PorousFlowMassFraction
mass_fraction_vars = 'mass_frac_phase0_species0 mass_frac_phase1_species0'
[../]
[./water]
type = PorousFlowSingleComponentFluid
fp = tabulated_water
phase = 0
[../]
[./co2]
type = PorousFlowSingleComponentFluid
fp = tabulated_co2
phase = 1
[../]
[./relperm_water]
type = PorousFlowRelativePermeabilityCorey
n = 4
s_res = 0.1
sum_s_res = 0.2
phase = 0
[../]
[./relperm_co2]
type = PorousFlowRelativePermeabilityBC
nw_phase = true
lambda = 2
s_res = 0.1
sum_s_res = 0.2
phase = 1
[../]
[./porosity]
type = PorousFlowPorosity
fluid = true
mechanical = true
thermal = true
porosity_zero = 0.1
reference_temperature = 330
reference_porepressure = 20E6
thermal_expansion_coeff = 15E-6 # volumetric
solid_bulk = 8E9 # unimportant since biot = 1
[../]
[./permeability_aquifer]
type = PorousFlowPermeabilityKozenyCarman
block = aquifer
poroperm_function = kozeny_carman_phi0
phi0 = 0.1
n = 2
m = 2
k0 = 1E-12
[../]
[./permeability_caps]
type = PorousFlowPermeabilityKozenyCarman
block = caps
poroperm_function = kozeny_carman_phi0
phi0 = 0.1
n = 2
m = 2
k0 = 1E-15
k_anisotropy = '1 0 0 0 1 0 0 0 0.1'
[../]
[./rock_thermal_conductivity]
type = PorousFlowThermalConductivityIdeal
dry_thermal_conductivity = '2 0 0 0 2 0 0 0 2'
[../]
[./rock_internal_energy]
type = PorousFlowMatrixInternalEnergy
specific_heat_capacity = 1100
density = 2300
[../]
[./elasticity_tensor]
type = ComputeIsotropicElasticityTensor
youngs_modulus = 5E9
poissons_ratio = 0.0
[../]
[./strain]
type = ComputeAxisymmetricRZSmallStrain
eigenstrain_names = 'thermal_contribution initial_stress'
[../]
[./thermal_contribution]
type = ComputeThermalExpansionEigenstrain
temperature = T
thermal_expansion_coeff = 5E-6 # this is the linear thermal expansion coefficient
eigenstrain_name = thermal_contribution
stress_free_temperature = 330
[../]
[./initial_strain]
type = ComputeEigenstrainFromInitialStress
initial_stress = '20E6 0 0 0 20E6 0 0 0 20E6'
eigenstrain_name = initial_stress
[../]
[./stress]
type = ComputeLinearElasticStress
[../]
[./effective_fluid_pressure]
type = PorousFlowEffectiveFluidPressure
[../]
[./volumetric_strain]
type = PorousFlowVolumetricStrain
[../]
[]
[Postprocessors]
[./effective_fluid_pressure_at_wellbore]
type = PointValue
variable = effective_fluid_pressure
point = '1 0 0'
execute_on = timestep_begin
use_displaced_mesh = false
[../]
[./constrained_effective_fluid_pressure_at_wellbore]
type = FunctionValuePostprocessor
function = constrain_effective_fluid_pressure
execute_on = timestep_begin
[../]
[]
[Functions]
[./constrain_effective_fluid_pressure]
type = ParsedFunction
vars = effective_fluid_pressure_at_wellbore
vals = effective_fluid_pressure_at_wellbore
value = 'max(effective_fluid_pressure_at_wellbore, 20E6)'
[../]
[]
[Preconditioning]
active = basic
[./basic]
type = SMP
full = true
petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = ' asm lu NONZERO 2'
[../]
[./preferred_but_might_not_be_installed]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
[../]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1E3
[./TimeStepper]
type = IterationAdaptiveDT
dt = 1E3
growth_factor = 1.2
optimal_iterations = 10
[../]
nl_abs_tol = 1E-7
[]
[Outputs]
exodus = true
[]
modules/porous_flow/examples/tutorial/00.i
# Creates the mesh for the remainder of the tutorial
[Mesh]
[annular]
type = AnnularMeshGenerator
nr = 10
rmin = 1.0
rmax = 10
growth_r = 1.4
nt = 4
dmin = 0
dmax = 90
[]
[./make3D]
type = MeshExtruderGenerator
extrusion_vector = '0 0 12'
num_layers = 3
bottom_sideset = 'bottom'
top_sideset = 'top'
input = annular
[../]
[./shift_down]
type = TransformGenerator
transform = TRANSLATE
vector_value = '0 0 -6'
input = make3D
[../]
[./aquifer]
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 0 -2'
top_right = '10 10 2'
input = shift_down
[../]
[./injection_area]
type = ParsedGenerateSideset
combinatorial_geometry = 'x*x+y*y<1.01'
included_subdomain_ids = 1
new_sideset_name = 'injection_area'
input = 'aquifer'
[../]
[./rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caps aquifer'
input = 'injection_area'
[../]
[]
[Variables]
[./dummy_var]
[../]
[]
[Kernels]
[./dummy_diffusion]
type = Diffusion
variable = dummy_var
[../]
[]
[Executioner]
type = Steady
[]
[Outputs]
file_base = 3D_mesh
exodus = true
[]
modules/porous_flow/examples/tutorial/05_tabulated.i
# Darcy flow with heat advection and conduction, using Water97 properties
[Mesh]
[annular]
type = AnnularMeshGenerator
nr = 10
rmin = 1.0
rmax = 10
growth_r = 1.4
nt = 4
dmin = 0
dmax = 90
[]
[./make3D]
type = MeshExtruderGenerator
extrusion_vector = '0 0 12'
num_layers = 3
bottom_sideset = 'bottom'
top_sideset = 'top'
input = annular
[../]
[./shift_down]
type = TransformGenerator
transform = TRANSLATE
vector_value = '0 0 -6'
input = make3D
[../]
[./aquifer]
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 0 -2'
top_right = '10 10 2'
input = shift_down
[../]
[./injection_area]
type = ParsedGenerateSideset
combinatorial_geometry = 'x*x+y*y<1.01'
included_subdomain_ids = 1
new_sideset_name = 'injection_area'
input = 'aquifer'
[../]
[./rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caps aquifer'
input = 'injection_area'
[../]
[]
[GlobalParams]
PorousFlowDictator = dictator
[]
[Variables]
[./porepressure]
initial_condition = 1E6
[../]
[./temperature]
initial_condition = 313
scaling = 1E-8
[../]
[]
[PorousFlowBasicTHM]
porepressure = porepressure
temperature = temperature
coupling_type = ThermoHydro
gravity = '0 0 0'
fp = tabulated_water
[]
[BCs]
[./constant_injection_porepressure]
type = DirichletBC
variable = porepressure
value = 2E6
boundary = injection_area
[../]
[./constant_injection_temperature]
type = DirichletBC
variable = temperature
value = 333
boundary = injection_area
[../]
[]
[Modules]
[./FluidProperties]
[./true_water]
type = Water97FluidProperties
[../]
[./tabulated_water]
type = TabulatedFluidProperties
fp = true_water
temperature_min = 275
interpolated_properties = 'density viscosity enthalpy internal_energy'
fluid_property_file = water97_tabulated.csv
[../]
[../]
[]
[Materials]
[./porosity]
type = PorousFlowPorosity
porosity_zero = 0.1
[../]
[./biot_modulus]
type = PorousFlowConstantBiotModulus
biot_coefficient = 0.8
solid_bulk_compliance = 2E-7
fluid_bulk_modulus = 1E7
[../]
[./permeability_aquifer]
type = PorousFlowPermeabilityConst
block = aquifer
permeability = '1E-14 0 0 0 1E-14 0 0 0 1E-14'
[../]
[./permeability_caps]
type = PorousFlowPermeabilityConst
block = caps
permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-16'
[../]
[./thermal_expansion]
type = PorousFlowConstantThermalExpansionCoefficient
biot_coefficient = 0.8
drained_coefficient = 0.003
fluid_coefficient = 0.0002
[../]
[./rock_internal_energy]
type = PorousFlowMatrixInternalEnergy
density = 2500.0
specific_heat_capacity = 1200.0
[../]
[./thermal_conductivity]
type = PorousFlowThermalConductivityIdeal
dry_thermal_conductivity = '10 0 0 0 10 0 0 0 10'
block = 'caps aquifer'
[../]
[]
[Preconditioning]
active = basic
[./basic]
type = SMP
full = true
petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = ' asm lu NONZERO 2'
[../]
[./preferred_but_might_not_be_installed]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
[../]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1E6
dt = 1E5
nl_abs_tol = 1E-10
[]
[Outputs]
exodus = true
[]
modules/combined/test/tests/mortar_tm/2d/frictionless_second/small.i
E_block = 1e7
E_plank = 1e7
elem = QUAD9
order = SECOND
name = 'small'
[Mesh]
patch_size = 80
patch_update_strategy = auto
[./plank]
type = GeneratedMeshGenerator
dim = 2
xmin = -0.3
xmax = 0.3
ymin = -10
ymax = 10
nx = 2
ny = 67
elem_type = ${elem}
[../]
[./plank_sidesets]
type = RenameBoundaryGenerator
input = plank
old_boundary_id = '0 1 2 3'
new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
[../]
[./plank_id]
type = SubdomainIDGenerator
input = plank_sidesets
subdomain_id = 1
[../]
[./block]
type = GeneratedMeshGenerator
dim = 2
xmin = 0.31
xmax = 0.91
ymin = 7.7
ymax = 8.5
nx = 3
ny = 4
elem_type = ${elem}
[../]
[./block_id]
type = SubdomainIDGenerator
input = block
subdomain_id = 2
[../]
[./combined]
type = MeshCollectionGenerator
inputs = 'plank_id block_id'
[../]
[./block_rename]
type = RenameBlockGenerator
input = combined
old_block_id = '1 2'
new_block_name = 'plank block'
[../]
[./block_sidesets]
type = SideSetsFromPointsGenerator
input = block_rename
points = '0.6 7.7 0
0.91 8.0 0
0.6 8.5 0
0.31 8.0 0'
new_boundary = 'block_bottom block_right block_top block_left'
[../]
[]
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Variables]
[./disp_x]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[./disp_y]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[]
[Modules/TensorMechanics/Master]
[./action]
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'plank block'
[../]
[]
[Contact]
[./frictionless]
mesh = block_sidesets
master = plank_right
slave = block_left
formulation = mortar
system = constraint
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
boundary = plank_left
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
boundary = plank_bottom
value = 0.0
[../]
[./right_x]
type = FunctionDirichletBC
variable = disp_x
boundary = block_right
function = '-0.04*sin(4*(t+1.5))+0.02'
[../]
[./right_y]
type = FunctionDirichletBC
variable = disp_y
boundary = block_right
function = '-t'
[../]
[]
[Materials]
[./plank]
type = ComputeIsotropicElasticityTensor
block = 'plank'
poissons_ratio = 0.3
youngs_modulus = ${E_plank}
[../]
[./block]
type = ComputeIsotropicElasticityTensor
block = 'block'
poissons_ratio = 0.3
youngs_modulus = ${E_block}
[../]
[./stress]
type = ComputeLinearElasticStress
block = 'plank block'
[../]
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu 1e-5 NONZERO 1e-15'
end_time = 13.5
dt = 0.1
dtmin = 0.1
timestep_tolerance = 1e-6
line_search = 'contact'
[]
[Postprocessors]
[./nl_its]
type = NumNonlinearIterations
[../]
[./total_nl_its]
type = CumulativeValuePostprocessor
postprocessor = nl_its
[../]
[./l_its]
type = NumLinearIterations
[../]
[./total_l_its]
type = CumulativeValuePostprocessor
postprocessor = l_its
[../]
[./contact]
type = ContactDOFSetSize
variable = frictionless_normal_lm
subdomain = frictionless_slave_subdomain
[../]
[./avg_hydro]
type = ElementAverageValue
variable = hydrostatic_stress
block = 'block'
[../]
[./max_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
[../]
[./min_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
value_type = min
[../]
[./avg_vonmises]
type = ElementAverageValue
variable = vonmises_stress
block = 'block'
[../]
[./max_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
[../]
[./min_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
value_type = min
[../]
[]
[Outputs]
exodus = true
file_base = ${name}
[./comp]
type = CSV
show = 'contact'
[../]
[./out]
type = CSV
file_base = '${name}_out'
[../]
[]
[Debug]
show_var_residual_norms = true
[]
modules/combined/test/tests/mortar_tm/2d/frictionless_second/finite_rr.i
E_block = 1e7
E_plank = 1e7
elem = QUAD9
order = SECOND
name = 'finite_rr'
[Mesh]
patch_size = 80
patch_update_strategy = auto
[./plank]
type = GeneratedMeshGenerator
dim = 2
xmin = -0.3
xmax = 0.3
ymin = -10
ymax = 10
nx = 2
ny = 67
elem_type = ${elem}
[../]
[./plank_sidesets]
type = RenameBoundaryGenerator
input = plank
old_boundary_id = '0 1 2 3'
new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
[../]
[./plank_id]
type = SubdomainIDGenerator
input = plank_sidesets
subdomain_id = 1
[../]
[./block]
type = GeneratedMeshGenerator
dim = 2
xmin = 0.31
xmax = 0.91
ymin = 7.7
ymax = 8.5
nx = 3
ny = 4
elem_type = ${elem}
[../]
[./block_id]
type = SubdomainIDGenerator
input = block
subdomain_id = 2
[../]
[./combined]
type = MeshCollectionGenerator
inputs = 'plank_id block_id'
[../]
[./block_rename]
type = RenameBlockGenerator
input = combined
old_block_id = '1 2'
new_block_name = 'plank block'
[../]
[./block_sidesets]
type = SideSetsFromPointsGenerator
input = block_rename
points = '0.6 7.7 0
0.91 8.0 0
0.6 8.5 0
0.31 8.0 0'
new_boundary = 'block_bottom block_right block_top block_left'
[../]
[]
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Problem]
type = ReferenceResidualProblem
extra_tag_vectors = 'ref'
reference_vector = 'ref'
[]
[Variables]
[./disp_x]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[./disp_y]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[]
[Modules/TensorMechanics/Master]
[./action]
strain = FINITE
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'plank block'
extra_vector_tags = 'ref'
[../]
[]
[Contact]
[./frictionless]
mesh = block_sidesets
master = plank_right
slave = block_left
formulation = mortar
system = constraint
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
preset = false
boundary = plank_left
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
preset = false
boundary = plank_bottom
value = 0.0
[../]
[./right_x]
type = FunctionDirichletBC
variable = disp_x
preset = false
boundary = block_right
function = '-0.04*sin(4*(t+1.5))+0.02'
[../]
[./right_y]
type = FunctionDirichletBC
variable = disp_y
preset = false
boundary = block_right
function = '-t'
[../]
[]
[Materials]
[./plank]
type = ComputeIsotropicElasticityTensor
block = 'plank'
poissons_ratio = 0.3
youngs_modulus = ${E_plank}
[../]
[./block]
type = ComputeIsotropicElasticityTensor
block = 'block'
poissons_ratio = 0.3
youngs_modulus = ${E_block}
[../]
[./stress]
type = ComputeFiniteStrainElasticStress
block = 'plank block'
[../]
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu 1e-5 NONZERO 1e-15'
end_time = 13.5
dt = 0.1
dtmin = 0.1
timestep_tolerance = 1e-6
line_search = 'contact'
nl_abs_tol = 1e-7
[]
[Postprocessors]
[./nl_its]
type = NumNonlinearIterations
[../]
[./total_nl_its]
type = CumulativeValuePostprocessor
postprocessor = nl_its
[../]
[./l_its]
type = NumLinearIterations
[../]
[./total_l_its]
type = CumulativeValuePostprocessor
postprocessor = l_its
[../]
[./contact]
type = ContactDOFSetSize
variable = frictionless_normal_lm
subdomain = frictionless_slave_subdomain
[../]
[./avg_hydro]
type = ElementAverageValue
variable = hydrostatic_stress
block = 'block'
[../]
[./max_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
[../]
[./min_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
value_type = min
[../]
[./avg_vonmises]
type = ElementAverageValue
variable = vonmises_stress
block = 'block'
[../]
[./max_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
[../]
[./min_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
value_type = min
[../]
[]
[Outputs]
exodus = true
file_base = ${name}
[./comp]
type = CSV
show = 'contact'
[../]
[./out]
type = CSV
file_base = '${name}_out'
[../]
[]
[Debug]
show_var_residual_norms = true
[]
modules/combined/test/tests/mortar_tm/2drz/frictionless_second/finite.i
E_block = 1e7
E_plank = 1e7
elem = QUAD9
order = SECOND
name = 'finite'
[Problem]
coord_type = RZ
[]
[Mesh]
patch_size = 80
patch_update_strategy = auto
[./plank]
type = GeneratedMeshGenerator
dim = 2
xmin = 0
xmax = 0.6
ymin = -10
ymax = 10
nx = 2
ny = 67
elem_type = ${elem}
[../]
[./plank_sidesets]
type = RenameBoundaryGenerator
input = plank
old_boundary_id = '0 1 2 3'
new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
[../]
[./plank_id]
type = SubdomainIDGenerator
input = plank_sidesets
subdomain_id = 1
[../]
[./block]
type = GeneratedMeshGenerator
dim = 2
xmin = 0.61
xmax = 1.21
ymin = 9.2
ymax = 10.0
nx = 3
ny = 4
elem_type = ${elem}
[../]
[./block_id]
type = SubdomainIDGenerator
input = block
subdomain_id = 2
[../]
[./combined]
type = MeshCollectionGenerator
inputs = 'plank_id block_id'
[../]
[./block_rename]
type = RenameBlockGenerator
input = combined
old_block_id = '1 2'
new_block_name = 'plank block'
[../]
[./block_sidesets]
type = SideSetsFromPointsGenerator
input = block_rename
points = '0.9 9.2 0
1.21 9.5 0
0.9 10.0 0
0.61 9.5 0'
new_boundary = 'block_bottom block_right block_top block_left'
[../]
[]
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Variables]
[./disp_x]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[./disp_y]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[]
[Modules/TensorMechanics/Master]
[./block]
strain = FINITE
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'block'
[../]
[./plank]
strain = FINITE
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'plank'
eigenstrain_names = 'swell'
[../]
[]
[Contact]
[./frictionless]
mesh = block_sidesets
master = plank_right
slave = block_left
formulation = mortar
system = constraint
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
preset = false
boundary = plank_left
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
preset = false
boundary = plank_bottom
value = 0.0
[../]
[./right_x]
type = DirichletBC
variable = disp_x
preset = false
boundary = block_right
value = 0
[../]
[./right_y]
type = FunctionDirichletBC
variable = disp_y
preset = false
boundary = block_right
function = '-t'
[../]
[]
[Materials]
[./plank]
type = ComputeIsotropicElasticityTensor
block = 'plank'
poissons_ratio = 0.3
youngs_modulus = ${E_plank}
[../]
[./block]
type = ComputeIsotropicElasticityTensor
block = 'block'
poissons_ratio = 0.3
youngs_modulus = ${E_block}
[../]
[./stress]
type = ComputeFiniteStrainElasticStress
block = 'plank block'
[../]
[./swell]
type = ComputeEigenstrain
block = 'plank'
eigenstrain_name = swell
eigen_base = '1 0 0 0 0 0 0 0 0'
prefactor = swell_mat
[../]
[./swell_mat]
type = GenericFunctionMaterial
prop_names = 'swell_mat'
prop_values = '7e-2*(1-cos(4*t))'
block = 'plank'
[../]
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu 1e-5 NONZERO 1e-15'
end_time = 10
dt = 0.1
dtmin = 0.1
timestep_tolerance = 1e-6
line_search = 'contact'
[]
[Postprocessors]
[./nl_its]
type = NumNonlinearIterations
[../]
[./total_nl_its]
type = CumulativeValuePostprocessor
postprocessor = nl_its
[../]
[./l_its]
type = NumLinearIterations
[../]
[./total_l_its]
type = CumulativeValuePostprocessor
postprocessor = l_its
[../]
[./contact]
type = ContactDOFSetSize
variable = frictionless_normal_lm
subdomain = frictionless_slave_subdomain
[../]
[./avg_hydro]
type = ElementAverageValue
variable = hydrostatic_stress
block = 'block'
[../]
[./max_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
[../]
[./min_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
value_type = min
[../]
[./avg_vonmises]
type = ElementAverageValue
variable = vonmises_stress
block = 'block'
[../]
[./max_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
[../]
[./min_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
value_type = min
[../]
[]
[Outputs]
exodus = true
file_base = ${name}
[./comp]
type = CSV
show = 'contact'
[../]
[./out]
type = CSV
file_base = '${name}_out'
[../]
[]
[Debug]
show_var_residual_norms = true
[]
modules/combined/test/tests/mortar_tm/2drz/frictionless_second/finite_noaction.i
E_block = 1e7
E_plank = 1e7
elem = QUAD9
order = SECOND
name = 'finite_noaction'
[Problem]
coord_type = RZ
[]
[Mesh]
patch_size = 80
patch_update_strategy = auto
[./plank]
type = GeneratedMeshGenerator
dim = 2
xmin = 0
xmax = 0.6
ymin = -10
ymax = 10
nx = 2
ny = 67
elem_type = ${elem}
[../]
[./plank_sidesets]
type = RenameBoundaryGenerator
input = plank
old_boundary_id = '0 1 2 3'
new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
[../]
[./plank_id]
type = SubdomainIDGenerator
input = plank_sidesets
subdomain_id = 1
[../]
[./block]
type = GeneratedMeshGenerator
dim = 2
xmin = 0.61
xmax = 1.21
ymin = 9.2
ymax = 10.0
nx = 3
ny = 4
elem_type = ${elem}
[../]
[./block_id]
type = SubdomainIDGenerator
input = block
subdomain_id = 2
[../]
[./combined]
type = MeshCollectionGenerator
inputs = 'plank_id block_id'
[../]
[./block_rename]
type = RenameBlockGenerator
input = combined
old_block_id = '1 2'
new_block_name = 'plank block'
[../]
[./block_sidesets]
type = SideSetsFromPointsGenerator
input = block_rename
points = '0.9 9.2 0
1.21 9.5 0
0.9 10.0 0
0.61 9.5 0'
new_boundary = 'block_bottom block_right block_top block_left'
[../]
[./slave]
input = block_sidesets
type = LowerDBlockFromSidesetGenerator
sidesets = 'block_left'
new_block_id = '30'
new_block_name = 'frictionless_slave_subdomain'
[../]
[./master]
input = slave
type = LowerDBlockFromSidesetGenerator
sidesets = 'plank_right'
new_block_id = '20'
new_block_name = 'frictionless_master_subdomain'
[../]
[]
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Variables]
[./disp_x]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[./disp_y]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[./frictionless_normal_lm]
order = ${order}
block = 'frictionless_slave_subdomain'
[../]
[]
[Modules/TensorMechanics/Master]
[./block]
strain = FINITE
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'block'
[../]
[./plank]
strain = FINITE
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'plank'
eigenstrain_names = 'swell'
[../]
[]
[Constraints]
[./lm]
type = NormalNodalLMMechanicalContact
slave = block_left
master = plank_right
variable = frictionless_normal_lm
master_variable = disp_x
disp_y = disp_y
ncp_function_type = min
use_displaced_mesh = true
[../]
[./normal_x]
type = NormalMortarMechanicalContact
master_boundary = plank_right
slave_boundary = block_left
master_subdomain = frictionless_master_subdomain
slave_subdomain = frictionless_slave_subdomain
variable = frictionless_normal_lm
slave_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = false
[../]
[./normal_y]
type = NormalMortarMechanicalContact
master_boundary = plank_right
slave_boundary = block_left
master_subdomain = frictionless_master_subdomain
slave_subdomain = frictionless_slave_subdomain
variable = frictionless_normal_lm
slave_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = false
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
preset = false
boundary = plank_left
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
preset = false
boundary = plank_bottom
value = 0.0
[../]
[./right_x]
type = DirichletBC
variable = disp_x
preset = false
boundary = block_right
value = 0
[../]
[./right_y]
type = FunctionDirichletBC
variable = disp_y
preset = false
boundary = block_right
function = '-t'
[../]
[]
[Materials]
[./plank]
type = ComputeIsotropicElasticityTensor
block = 'plank'
poissons_ratio = 0.3
youngs_modulus = ${E_plank}
[../]
[./block]
type = ComputeIsotropicElasticityTensor
block = 'block'
poissons_ratio = 0.3
youngs_modulus = ${E_block}
[../]
[./stress]
type = ComputeFiniteStrainElasticStress
block = 'plank block'
[../]
[./swell]
type = ComputeEigenstrain
block = 'plank'
eigenstrain_name = swell
eigen_base = '1 0 0 0 0 0 0 0 0'
prefactor = swell_mat
[../]
[./swell_mat]
type = GenericFunctionMaterial
prop_names = 'swell_mat'
prop_values = '7e-2*(1-cos(4*t))'
block = 'plank'
[../]
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu 1e-5 NONZERO 1e-15'
end_time = 10
dt = 0.1
dtmin = 0.1
timestep_tolerance = 1e-6
line_search = 'contact'
[]
[Postprocessors]
[./nl_its]
type = NumNonlinearIterations
[../]
[./total_nl_its]
type = CumulativeValuePostprocessor
postprocessor = nl_its
[../]
[./l_its]
type = NumLinearIterations
[../]
[./total_l_its]
type = CumulativeValuePostprocessor
postprocessor = l_its
[../]
[./contact]
type = ContactDOFSetSize
variable = frictionless_normal_lm
subdomain = frictionless_slave_subdomain
[../]
[./avg_hydro]
type = ElementAverageValue
variable = hydrostatic_stress
block = 'block'
[../]
[./max_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
[../]
[./min_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
value_type = min
[../]
[./avg_vonmises]
type = ElementAverageValue
variable = vonmises_stress
block = 'block'
[../]
[./max_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
[../]
[./min_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
value_type = min
[../]
[]
[Outputs]
exodus = true
file_base = ${name}
[./comp]
type = CSV
show = 'contact'
[../]
[./out]
type = CSV
file_base = '${name}_out'
[../]
[]
[Debug]
show_var_residual_norms = true
[]
modules/combined/test/tests/mortar_tm/2drz/ad_frictionless_second/finite.i
E_block = 1e7
E_plank = 1e7
elem = QUAD9
order = SECOND
name = 'finite'
[Problem]
coord_type = RZ
[]
[Mesh]
patch_size = 80
patch_update_strategy = auto
[./plank]
type = GeneratedMeshGenerator
dim = 2
xmin = 0
xmax = 0.6
ymin = -10
ymax = 10
nx = 2
ny = 67
elem_type = ${elem}
[../]
[./plank_sidesets]
type = RenameBoundaryGenerator
input = plank
old_boundary_id = '0 1 2 3'
new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
[../]
[./plank_id]
type = SubdomainIDGenerator
input = plank_sidesets
subdomain_id = 1
[../]
[./block]
type = GeneratedMeshGenerator
dim = 2
xmin = 0.61
xmax = 1.21
ymin = 9.2
ymax = 10.0
nx = 3
ny = 4
elem_type = ${elem}
[../]
[./block_id]
type = SubdomainIDGenerator
input = block
subdomain_id = 2
[../]
[./combined]
type = MeshCollectionGenerator
inputs = 'plank_id block_id'
[../]
[./block_rename]
type = RenameBlockGenerator
input = combined
old_block_id = '1 2'
new_block_name = 'plank block'
[../]
[./block_sidesets]
type = SideSetsFromPointsGenerator
input = block_rename
points = '0.9 9.2 0
1.21 9.5 0
0.9 10.0 0
0.61 9.5 0'
new_boundary = 'block_bottom block_right block_top block_left'
[../]
[]
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Variables]
[./disp_x]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[./disp_y]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[]
[Modules/TensorMechanics/Master]
[./block]
use_automatic_differentiation = true
strain = FINITE
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'block'
[../]
[./plank]
use_automatic_differentiation = true
strain = FINITE
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'plank'
eigenstrain_names = 'swell'
[../]
[]
[Contact]
[./frictionless]
mesh = block_sidesets
master = plank_right
slave = block_left
formulation = mortar
system = constraint
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
preset = false
boundary = plank_left
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
preset = false
boundary = plank_bottom
value = 0.0
[../]
[./right_x]
type = DirichletBC
variable = disp_x
preset = false
boundary = block_right
value = 0
[../]
[./right_y]
type = ADFunctionDirichletBC
variable = disp_y
preset = false
boundary = block_right
function = '-t'
[../]
[]
[Materials]
[./plank]
type = ComputeIsotropicElasticityTensor
block = 'plank'
poissons_ratio = 0.3
youngs_modulus = ${E_plank}
[../]
[./block]
type = ComputeIsotropicElasticityTensor
block = 'block'
poissons_ratio = 0.3
youngs_modulus = ${E_block}
[../]
[./stress]
type = ADComputeFiniteStrainElasticStress
block = 'plank block'
[../]
[./swell]
type = ADComputeEigenstrain
block = 'plank'
eigenstrain_name = swell
eigen_base = '1 0 0 0 0 0 0 0 0'
prefactor = swell_mat
[../]
[./swell_mat]
type = GenericFunctionMaterial
prop_names = 'swell_mat'
prop_values = '7e-2*(1-cos(4*t))'
block = 'plank'
[../]
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu 1e-5 NONZERO 1e-15'
end_time = 10
dt = 0.1
dtmin = 0.1
timestep_tolerance = 1e-6
line_search = 'contact'
[]
[Postprocessors]
[./nl_its]
type = NumNonlinearIterations
[../]
[./total_nl_its]
type = CumulativeValuePostprocessor
postprocessor = nl_its
[../]
[./l_its]
type = NumLinearIterations
[../]
[./total_l_its]
type = CumulativeValuePostprocessor
postprocessor = l_its
[../]
[./contact]
type = ContactDOFSetSize
variable = frictionless_normal_lm
subdomain = frictionless_slave_subdomain
[../]
[./avg_hydro]
type = ElementAverageValue
variable = hydrostatic_stress
block = 'block'
[../]
[./max_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
[../]
[./min_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
value_type = min
[../]
[./avg_vonmises]
type = ElementAverageValue
variable = vonmises_stress
block = 'block'
[../]
[./max_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
[../]
[./min_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
value_type = min
[../]
[]
[Outputs]
exodus = true
file_base = ${name}
[./comp]
type = CSV
show = 'contact'
[../]
[./out]
type = CSV
file_base = '${name}_out'
[../]
[]
[Debug]
show_var_residual_norms = true
[]
modules/combined/test/tests/mortar_tm/2d/ad_frictionless_sec/finite_rr.i
E_block = 1e7
E_plank = 1e7
elem = QUAD9
order = SECOND
name = 'finite_rr'
[Mesh]
patch_size = 80
patch_update_strategy = auto
[./plank]
type = GeneratedMeshGenerator
dim = 2
xmin = -0.3
xmax = 0.3
ymin = -10
ymax = 10
nx = 2
ny = 67
elem_type = ${elem}
[../]
[./plank_sidesets]
type = RenameBoundaryGenerator
input = plank
old_boundary_id = '0 1 2 3'
new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
[../]
[./plank_id]
type = SubdomainIDGenerator
input = plank_sidesets
subdomain_id = 1
[../]
[./block]
type = GeneratedMeshGenerator
dim = 2
xmin = 0.31
xmax = 0.91
ymin = 7.7
ymax = 8.5
nx = 3
ny = 4
elem_type = ${elem}
[../]
[./block_id]
type = SubdomainIDGenerator
input = block
subdomain_id = 2
[../]
[./combined]
type = MeshCollectionGenerator
inputs = 'plank_id block_id'
[../]
[./block_rename]
type = RenameBlockGenerator
input = combined
old_block_id = '1 2'
new_block_name = 'plank block'
[../]
[./block_sidesets]
type = SideSetsFromPointsGenerator
input = block_rename
points = '0.6 7.7 0
0.91 8.0 0
0.6 8.5 0
0.31 8.0 0'
new_boundary = 'block_bottom block_right block_top block_left'
[../]
[]
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Problem]
type = ReferenceResidualProblem
extra_tag_vectors = 'ref'
reference_vector = 'ref'
[]
[Variables]
[./disp_x]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[./disp_y]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[]
[Modules/TensorMechanics/Master]
[./action]
strain = FINITE
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'plank block'
extra_vector_tags = 'ref'
use_automatic_differentiation = true
[../]
[]
[Contact]
[./frictionless]
mesh = block_sidesets
master = plank_right
slave = block_left
formulation = mortar
system = constraint
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
preset = false
boundary = plank_left
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
preset = false
boundary = plank_bottom
value = 0.0
[../]
[./right_x]
type = ADFunctionDirichletBC
variable = disp_x
preset = false
boundary = block_right
function = '-0.04*sin(4*(t+1.5))+0.02'
[../]
[./right_y]
type = ADFunctionDirichletBC
variable = disp_y
preset = false
boundary = block_right
function = '-t'
[../]
[]
[Materials]
[./plank]
type = ComputeIsotropicElasticityTensor
block = 'plank'
poissons_ratio = 0.3
youngs_modulus = ${E_plank}
[../]
[./block]
type = ComputeIsotropicElasticityTensor
block = 'block'
poissons_ratio = 0.3
youngs_modulus = ${E_block}
[../]
[./stress]
type = ADComputeFiniteStrainElasticStress
block = 'plank block'
[../]
[]
[Executioner]
type = Transient
solve_type = 'NEWTON'
petsc_options = '-snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu 1e-5 NONZERO 1e-15'
end_time = 13.5
dt = 0.1
dtmin = 0.1
timestep_tolerance = 1e-6
line_search = 'contact'
nl_abs_tol = 1e-7
[]
[Postprocessors]
[./nl_its]
type = NumNonlinearIterations
[../]
[./total_nl_its]
type = CumulativeValuePostprocessor
postprocessor = nl_its
[../]
[./l_its]
type = NumLinearIterations
[../]
[./total_l_its]
type = CumulativeValuePostprocessor
postprocessor = l_its
[../]
[./contact]
type = ContactDOFSetSize
variable = frictionless_normal_lm
subdomain = frictionless_slave_subdomain
[../]
[./avg_hydro]
type = ElementAverageValue
variable = hydrostatic_stress
block = 'block'
[../]
[./max_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
[../]
[./min_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
value_type = min
[../]
[./avg_vonmises]
type = ElementAverageValue
variable = vonmises_stress
block = 'block'
[../]
[./max_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
[../]
[./min_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
value_type = min
[../]
[]
[Outputs]
exodus = true
file_base = ${name}
[./comp]
type = CSV
show = 'contact'
[../]
[./out]
type = CSV
file_base = '${name}_out'
[../]
[]
[Debug]
show_var_residual_norms = true
[]
modules/combined/test/tests/mortar_tm/2drz/ad_frictionless_second/small.i
E_block = 1e7
E_plank = 1e7
elem = QUAD9
order = SECOND
name = 'small'
[Problem]
coord_type = RZ
[]
[Mesh]
patch_size = 80
patch_update_strategy = auto
[./plank]
type = GeneratedMeshGenerator
dim = 2
xmin = 0
xmax = 0.6
ymin = -10
ymax = 10
nx = 2
ny = 67
elem_type = ${elem}
[../]
[./plank_sidesets]
type = RenameBoundaryGenerator
input = plank
old_boundary_id = '0 1 2 3'
new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
[../]
[./plank_id]
type = SubdomainIDGenerator
input = plank_sidesets
subdomain_id = 1
[../]
[./block]
type = GeneratedMeshGenerator
dim = 2
xmin = 0.61
xmax = 1.21
ymin = 9.2
ymax = 10.0
nx = 3
ny = 4
elem_type = ${elem}
[../]
[./block_id]
type = SubdomainIDGenerator
input = block
subdomain_id = 2
[../]
[./combined]
type = MeshCollectionGenerator
inputs = 'plank_id block_id'
[../]
[./block_rename]
type = RenameBlockGenerator
input = combined
old_block_id = '1 2'
new_block_name = 'plank block'
[../]
[./corner]
type = ExtraNodesetGenerator
input = block_rename
coord = '0 -10.0'
new_boundary = point
[../]
[./block_sidesets]
type = SideSetsFromPointsGenerator
input = corner
points = '0.9 9.2 0
1.21 9.5 0
0.9 10.0 0
0.61 9.5 0'
new_boundary = 'block_bottom block_right block_top block_left'
[../]
[]
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Variables]
[./disp_x]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[./disp_y]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[]
[Modules/TensorMechanics/Master]
[./block]
use_automatic_differentiation = true
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'block'
[../]
[./plank]
use_automatic_differentiation = true
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'plank'
eigenstrain_names = 'swell'
[../]
[]
[Contact]
[./frictionless]
mesh = block_sidesets
master = plank_right
slave = block_left
formulation = mortar
system = constraint
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
boundary = plank_left
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
boundary = plank_bottom
value = 0.0
[../]
[./right_x]
type = DirichletBC
variable = disp_x
boundary = block_right
value = 0
[../]
[./right_y]
type = ADFunctionDirichletBC
variable = disp_y
boundary = block_right
function = '-t'
[../]
[]
[Materials]
[./plank]
type = ComputeIsotropicElasticityTensor
block = 'plank'
poissons_ratio = 0.3
youngs_modulus = ${E_plank}
[../]
[./block]
type = ComputeIsotropicElasticityTensor
block = 'block'
poissons_ratio = 0.3
youngs_modulus = ${E_block}
[../]
[./stress]
type = ADComputeLinearElasticStress
block = 'plank block'
[../]
[./swell]
type = ADComputeEigenstrain
block = 'plank'
eigenstrain_name = swell
eigen_base = '1 0 0 0 0 0 0 0 0'
prefactor = swell_mat
[../]
[./swell_mat]
type = GenericFunctionMaterial
prop_names = 'swell_mat'
prop_values = '7e-2*(1-cos(4*t))'
block = 'plank'
[../]
[]
[Executioner]
type = Transient
solve_type = 'NEWTON'
petsc_options = '-snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu 1e-5 NONZERO 1e-15'
end_time = 10
dt = 0.1
dtmin = 0.1
timestep_tolerance = 1e-6
line_search = 'contact'
[]
[Postprocessors]
[./nl_its]
type = NumNonlinearIterations
[../]
[./total_nl_its]
type = CumulativeValuePostprocessor
postprocessor = nl_its
[../]
[./l_its]
type = NumLinearIterations
[../]
[./total_l_its]
type = CumulativeValuePostprocessor
postprocessor = l_its
[../]
[./contact]
type = ContactDOFSetSize
variable = frictionless_normal_lm
subdomain = frictionless_slave_subdomain
[../]
[./avg_hydro]
type = ElementAverageValue
variable = hydrostatic_stress
block = 'block'
[../]
[./max_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
[../]
[./min_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
value_type = min
[../]
[./avg_vonmises]
type = ElementAverageValue
variable = vonmises_stress
block = 'block'
[../]
[./max_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
[../]
[./min_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
value_type = min
[../]
[]
[Outputs]
exodus = true
file_base = ${name}
[./comp]
type = CSV
show = 'contact'
[../]
[./out]
type = CSV
file_base = '${name}_out'
[../]
[]
[Debug]
show_var_residual_norms = true
[]
modules/heat_conduction/test/tests/meshed_gap_thermal_contact/meshed_annulus_thermal_contact.i
[Mesh]
[fmesh]
type = FileMeshGenerator
file = meshed_annulus.e
[]
[rename]
type = RenameBlockGenerator
input = fmesh
old_block_id = '1 2 3'
new_block_id = '1 4 3'
[]
[]
[Variables]
[./temp]
block = '1 3'
initial_condition = 1.0
[../]
[]
[Kernels]
[./hc]
type = HeatConduction
variable = temp
block = '1 3'
[../]
[./source]
type = HeatSource
variable = temp
block = 3
value = 10.0
[../]
[]
[BCs]
[./outside]
type = DirichletBC
variable = temp
boundary = 1
value = 1.0
[../]
[]
[ThermalContact]
[./gap_conductivity]
type = GapHeatTransfer
variable = temp
master = 2
slave = 3
gap_conductivity = 0.5
[../]
[]
[Materials]
[./hcm]
type = HeatConductionMaterial
block = '1 3'
temp = temp
thermal_conductivity = 1
[../]
[]
[Problem]
type = FEProblem
kernel_coverage_check = false
material_coverage_check = false
[]
[Executioner]
type = Steady
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
[./out]
type = Exodus
[../]
[]
modules/combined/test/tests/mortar_tm/2drz/frictionless_second/finite_rr.i
E_block = 1e7
E_plank = 1e7
elem = QUAD9
order = SECOND
name = 'finite_rr'
[Problem]
coord_type = RZ
[]
[Mesh]
patch_size = 80
patch_update_strategy = auto
[./plank]
type = GeneratedMeshGenerator
dim = 2
xmin = 0
xmax = 0.6
ymin = -10
ymax = 10
nx = 2
ny = 67
elem_type = ${elem}
[../]
[./plank_sidesets]
type = RenameBoundaryGenerator
input = plank
old_boundary_id = '0 1 2 3'
new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
[../]
[./plank_id]
type = SubdomainIDGenerator
input = plank_sidesets
subdomain_id = 1
[../]
[./block]
type = GeneratedMeshGenerator
dim = 2
xmin = 0.61
xmax = 1.21
ymin = 9.2
ymax = 10.0
nx = 3
ny = 4
elem_type = ${elem}
[../]
[./block_id]
type = SubdomainIDGenerator
input = block
subdomain_id = 2
[../]
[./combined]
type = MeshCollectionGenerator
inputs = 'plank_id block_id'
[../]
[./block_rename]
type = RenameBlockGenerator
input = combined
old_block_id = '1 2'
new_block_name = 'plank block'
[../]
[./block_sidesets]
type = SideSetsFromPointsGenerator
input = block_rename
points = '0.9 9.2 0
1.21 9.5 0
0.9 10.0 0
0.61 9.5 0'
new_boundary = 'block_bottom block_right block_top block_left'
[../]
[]
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Problem]
type = ReferenceResidualProblem
extra_tag_vectors = 'ref'
reference_vector = 'ref'
[]
[Variables]
[./disp_x]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[./disp_y]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[]
[Modules/TensorMechanics/Master]
[./block]
strain = FINITE
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'block'
extra_vector_tags = 'ref'
[../]
[./plank]
strain = FINITE
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'plank'
eigenstrain_names = 'swell'
extra_vector_tags = 'ref'
[../]
[]
[Contact]
[./frictionless]
mesh = block_sidesets
master = plank_right
slave = block_left
formulation = mortar
system = constraint
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
preset = false
boundary = plank_left
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
preset = false
boundary = plank_bottom
value = 0.0
[../]
[./right_x]
type = DirichletBC
variable = disp_x
preset = false
boundary = block_right
value = 0
[../]
[./right_y]
type = FunctionDirichletBC
variable = disp_y
preset = false
boundary = block_right
function = '-t'
[../]
[]
[Materials]
[./plank]
type = ComputeIsotropicElasticityTensor
block = 'plank'
poissons_ratio = 0.3
youngs_modulus = ${E_plank}
[../]
[./block]
type = ComputeIsotropicElasticityTensor
block = 'block'
poissons_ratio = 0.3
youngs_modulus = ${E_block}
[../]
[./stress]
type = ComputeFiniteStrainElasticStress
block = 'plank block'
[../]
[./swell]
type = ComputeEigenstrain
block = 'plank'
eigenstrain_name = swell
eigen_base = '1 0 0 0 0 0 0 0 0'
prefactor = swell_mat
[../]
[./swell_mat]
type = GenericFunctionMaterial
prop_names = 'swell_mat'
prop_values = '7e-2*(1-cos(4*t))'
block = 'plank'
[../]
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu 1e-5 NONZERO 1e-15'
end_time = 10
dt = 0.1
dtmin = 0.1
timestep_tolerance = 1e-6
line_search = 'contact'
nl_abs_tol = 1e-12
[]
[Postprocessors]
[./nl_its]
type = NumNonlinearIterations
[../]
[./total_nl_its]
type = CumulativeValuePostprocessor
postprocessor = nl_its
[../]
[./l_its]
type = NumLinearIterations
[../]
[./total_l_its]
type = CumulativeValuePostprocessor
postprocessor = l_its
[../]
[./contact]
type = ContactDOFSetSize
variable = frictionless_normal_lm
subdomain = frictionless_slave_subdomain
[../]
[./avg_hydro]
type = ElementAverageValue
variable = hydrostatic_stress
block = 'block'
[../]
[./max_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
[../]
[./min_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
value_type = min
[../]
[./avg_vonmises]
type = ElementAverageValue
variable = vonmises_stress
block = 'block'
[../]
[./max_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
[../]
[./min_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
value_type = min
[../]
[]
[Outputs]
exodus = true
file_base = ${name}
[./comp]
type = CSV
show = 'contact'
[../]
[./out]
type = CSV
file_base = '${name}_out'
[../]
[]
[Debug]
show_var_residual_norms = true
[]
modules/porous_flow/examples/tutorial/00_2D.i
# Creates the mesh for the remainder of the tutorial
[Mesh]
[gen]
type = GeneratedMeshGenerator
dim = 2
nx = 10
xmin = 1.0
xmax = 10
bias_x = 1.4
ny = 3
ymin = -6
ymax = 6
[]
[./aquifer]
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 -2 0'
top_right = '10 2 0'
input = gen
[../]
[./injection_area]
type = ParsedGenerateSideset
combinatorial_geometry = 'x<1.0001'
included_subdomain_ids = 1
new_sideset_name = 'injection_area'
input = 'aquifer'
[../]
[./rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caps aquifer'
input = 'injection_area'
[../]
[]
[Variables]
[./dummy_var]
[../]
[]
[Kernels]
[./dummy_diffusion]
type = Diffusion
variable = dummy_var
[../]
[]
[Executioner]
type = Steady
[]
[Outputs]
file_base = 2D_mesh
exodus = true
[]
modules/porous_flow/examples/tutorial/08_KT.i
# Unsaturated Darcy-Richards flow
[Mesh]
[annular]
type = AnnularMeshGenerator
nr = 10
rmin = 1.0
rmax = 10
growth_r = 1.4
nt = 4
dmin = 0
dmax = 90
[]
[./make3D]
input = annular
type = MeshExtruderGenerator
extrusion_vector = '0 0 12'
num_layers = 3
bottom_sideset = 'bottom'
top_sideset = 'top'
[../]
[./shift_down]
type = TransformGenerator
transform = TRANSLATE
vector_value = '0 0 -6'
input = make3D
[../]
[./aquifer]
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 0 -2'
top_right = '10 10 2'
input = shift_down
[../]
[./injection_area]
type = ParsedGenerateSideset
combinatorial_geometry = 'x*x+y*y<1.01'
included_subdomain_ids = 1
new_sideset_name = 'injection_area'
input = 'aquifer'
[../]
[./rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caps aquifer'
input = 'injection_area'
[../]
[]
[GlobalParams]
PorousFlowDictator = dictator
[]
[Variables]
[./porepressure]
[../]
[]
[PorousFlowUnsaturated]
porepressure = porepressure
coupling_type = Hydro
gravity = '0 0 0'
fp = the_simple_fluid
relative_permeability_exponent = 3
relative_permeability_type = Corey
residual_saturation = 0.1
van_genuchten_alpha = 1E-6
van_genuchten_m = 0.6
stabilization = KT
flux_limiter_type = None
[]
[BCs]
[./production]
type = PorousFlowSink
variable = porepressure
fluid_phase = 0
flux_function = 1E-2
use_relperm = true
boundary = injection_area
[../]
[]
[Modules]
[./FluidProperties]
[./the_simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 2E9
viscosity = 1.0E-3
density0 = 1000.0
[../]
[../]
[]
[Materials]
[./porosity]
type = PorousFlowPorosity
porosity_zero = 0.1
[../]
[./permeability_aquifer]
type = PorousFlowPermeabilityConst
block = aquifer
permeability = '1E-14 0 0 0 1E-14 0 0 0 1E-14'
[../]
[./permeability_caps]
type = PorousFlowPermeabilityConst
block = caps
permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-16'
[../]
[]
[Preconditioning]
active = basic
[./basic]
type = SMP
full = true
petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = ' asm lu NONZERO 2'
[../]
[./preferred_but_might_not_be_installed]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
[../]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1E5
dt = 1E5
nl_rel_tol = 1E-14
[]
[Outputs]
exodus = true
[]
modules/combined/test/tests/mortar_tm/2drz/ad_frictionless_first/finite.i
E_block = 1e7
E_plank = 1e7
elem = QUAD4
order = FIRST
name = 'finite'
[Problem]
coord_type = RZ
[]
[Mesh]
patch_size = 80
patch_update_strategy = auto
[./plank]
type = GeneratedMeshGenerator
dim = 2
xmin = 0
xmax = 0.6
ymin = -10
ymax = 10
nx = 2
ny = 67
elem_type = ${elem}
[../]
[./plank_sidesets]
type = RenameBoundaryGenerator
input = plank
old_boundary_id = '0 1 2 3'
new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
[../]
[./plank_id]
type = SubdomainIDGenerator
input = plank_sidesets
subdomain_id = 1
[../]
[./block]
type = GeneratedMeshGenerator
dim = 2
xmin = 0.61
xmax = 1.21
ymin = 9.2
ymax = 10.0
nx = 3
ny = 4
elem_type = ${elem}
[../]
[./block_id]
type = SubdomainIDGenerator
input = block
subdomain_id = 2
[../]
[./combined]
type = MeshCollectionGenerator
inputs = 'plank_id block_id'
[../]
[./block_rename]
type = RenameBlockGenerator
input = combined
old_block_id = '1 2'
new_block_name = 'plank block'
[../]
[./block_sidesets]
type = SideSetsFromPointsGenerator
input = block_rename
points = '0.9 9.2 0
1.21 9.5 0
0.9 10.0 0
0.61 9.5 0'
new_boundary = 'block_bottom block_right block_top block_left'
[../]
[]
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Variables]
[./disp_x]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[./disp_y]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[]
[Modules/TensorMechanics/Master]
[./block]
use_automatic_differentiation = true
strain = FINITE
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'block'
[../]
[./plank]
use_automatic_differentiation = true
strain = FINITE
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'plank'
eigenstrain_names = 'swell'
[../]
[]
[Contact]
[./frictionless]
mesh = block_sidesets
master = plank_right
slave = block_left
formulation = mortar
system = constraint
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
boundary = plank_left
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
boundary = plank_bottom
value = 0.0
[../]
[./right_x]
type = DirichletBC
variable = disp_x
boundary = block_right
value = 0
[../]
[./right_y]
type = ADFunctionDirichletBC
variable = disp_y
preset = false
boundary = block_right
function = '-t'
[../]
[]
[Materials]
[./plank]
type = ComputeIsotropicElasticityTensor
block = 'plank'
poissons_ratio = 0.3
youngs_modulus = ${E_plank}
[../]
[./block]
type = ComputeIsotropicElasticityTensor
block = 'block'
poissons_ratio = 0.3
youngs_modulus = ${E_block}
[../]
[./stress]
type = ADComputeFiniteStrainElasticStress
block = 'plank block'
[../]
[./swell]
type = ADComputeEigenstrain
block = 'plank'
eigenstrain_name = swell
eigen_base = '1 0 0 0 0 0 0 0 0'
prefactor = swell_mat
[../]
[./swell_mat]
type = GenericFunctionMaterial
prop_names = 'swell_mat'
prop_values = '7e-2*(1-cos(4*t))'
block = 'plank'
[../]
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu 1e-5 NONZERO 1e-15'
end_time = 10
dt = 0.1
dtmin = 0.1
timestep_tolerance = 1e-6
line_search = 'contact'
[]
[Postprocessors]
[./nl_its]
type = NumNonlinearIterations
[../]
[./total_nl_its]
type = CumulativeValuePostprocessor
postprocessor = nl_its
[../]
[./l_its]
type = NumLinearIterations
[../]
[./total_l_its]
type = CumulativeValuePostprocessor
postprocessor = l_its
[../]
[./contact]
type = ContactDOFSetSize
variable = frictionless_normal_lm
subdomain = frictionless_slave_subdomain
[../]
[./avg_hydro]
type = ElementAverageValue
variable = hydrostatic_stress
block = 'block'
[../]
[./max_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
[../]
[./min_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
value_type = min
[../]
[./avg_vonmises]
type = ElementAverageValue
variable = vonmises_stress
block = 'block'
[../]
[./max_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
[../]
[./min_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
value_type = min
[../]
[]
[Outputs]
exodus = true
file_base = ${name}
[./comp]
type = CSV
show = 'contact'
[../]
[./out]
type = CSV
file_base = '${name}_out'
[../]
[]
[Debug]
show_var_residual_norms = true
[]
modules/porous_flow/examples/tutorial/10.i
# Unsaturated Darcy-Richards flow without using an Action
[Mesh]
[annular]
type = AnnularMeshGenerator
nr = 10
rmin = 1.0
rmax = 10
growth_r = 1.4
nt = 4
dmin = 0
dmax = 90
[]
[./make3D]
input = annular
type = MeshExtruderGenerator
extrusion_vector = '0 0 12'
num_layers = 3
bottom_sideset = 'bottom'
top_sideset = 'top'
[../]
[./shift_down]
type = TransformGenerator
transform = TRANSLATE
vector_value = '0 0 -6'
input = make3D
[../]
[./aquifer]
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 0 -2'
top_right = '10 10 2'
input = shift_down
[../]
[./injection_area]
type = ParsedGenerateSideset
combinatorial_geometry = 'x*x+y*y<1.01'
included_subdomain_ids = 1
new_sideset_name = 'injection_area'
input = 'aquifer'
[../]
[./rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caps aquifer'
input = 'injection_area'
[../]
[]
[UserObjects]
[./dictator]
type = PorousFlowDictator
porous_flow_vars = pp
number_fluid_phases = 1
number_fluid_components = 1
[../]
[./pc]
type = PorousFlowCapillaryPressureVG
alpha = 1E-6
m = 0.6
[../]
[]
[GlobalParams]
PorousFlowDictator = dictator
[]
[Variables]
[./pp]
[../]
[]
[Kernels]
[./time_derivative]
type = PorousFlowMassTimeDerivative
variable = pp
[../]
[./flux]
type = PorousFlowAdvectiveFlux
variable = pp
gravity = '0 0 0'
[../]
[]
[AuxVariables]
[./sat]
family = MONOMIAL
order = CONSTANT
[../]
[]
[AuxKernels]
[./saturation]
type = PorousFlowPropertyAux
variable = sat
property = saturation
[../]
[]
[BCs]
[./production]
type = PorousFlowSink
variable = pp
fluid_phase = 0
flux_function = 1E-2
use_relperm = true
boundary = injection_area
[../]
[]
[Modules]
[./FluidProperties]
[./the_simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 2E9
viscosity = 1.0E-3
density0 = 1000.0
[../]
[../]
[]
[Materials]
[./porosity]
type = PorousFlowPorosity
porosity_zero = 0.1
[../]
[./permeability_aquifer]
type = PorousFlowPermeabilityConst
block = aquifer
permeability = '1E-14 0 0 0 1E-14 0 0 0 1E-14'
[../]
[./permeability_caps]
type = PorousFlowPermeabilityConst
block = caps
permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-16'
[../]
[./saturation_calculator]
type = PorousFlow1PhaseP
porepressure = pp
capillary_pressure = pc
[../]
[./temperature]
type = PorousFlowTemperature
temperature = 293
[../]
[./massfrac]
type = PorousFlowMassFraction
[../]
[./simple_fluid]
type = PorousFlowSingleComponentFluid
fp = the_simple_fluid
phase = 0
[../]
[./relperm]
type = PorousFlowRelativePermeabilityCorey
n = 3
s_res = 0.1
sum_s_res = 0.1
phase = 0
[../]
[]
[Preconditioning]
active = basic
[./basic]
type = SMP
full = true
petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = ' asm lu NONZERO 2'
[../]
[./preferred_but_might_not_be_installed]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
[../]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1E6
dt = 1E5
nl_abs_tol = 1E-7
[]
[Outputs]
exodus = true
[]
modules/porous_flow/examples/tutorial/07.i
# Darcy flow with a tracer that precipitates causing mineralisation and porosity changes and permeability changes
[Mesh]
[annular]
type = AnnularMeshGenerator
nr = 10
rmin = 1.0
rmax = 10
growth_r = 1.4
nt = 4
dmin = 0
dmax = 90
[]
[./make3D]
input = annular
type = MeshExtruderGenerator
extrusion_vector = '0 0 12'
num_layers = 3
bottom_sideset = 'bottom'
top_sideset = 'top'
[../]
[./shift_down]
type = TransformGenerator
transform = TRANSLATE
vector_value = '0 0 -6'
input = make3D
[../]
[./aquifer]
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 0 -2'
top_right = '10 10 2'
input = shift_down
[../]
[./injection_area]
type = ParsedGenerateSideset
combinatorial_geometry = 'x*x+y*y<1.01'
included_subdomain_ids = 1
new_sideset_name = 'injection_area'
input = 'aquifer'
[../]
[./rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caps aquifer'
input = 'injection_area'
[../]
[]
[GlobalParams]
PorousFlowDictator = dictator
[]
[Variables]
[./porepressure]
[../]
[./tracer_concentration]
[../]
[]
[PorousFlowFullySaturated]
porepressure = porepressure
coupling_type = Hydro
gravity = '0 0 0'
fp = the_simple_fluid
mass_fraction_vars = tracer_concentration
number_aqueous_kinetic = 1
temperature = 283.0
[]
[AuxVariables]
[./eqm_k]
initial_condition = 0.1
[../]
[./mineral_conc]
family = MONOMIAL
order = CONSTANT
[../]
[./initial_and_reference_conc]
initial_condition = 0
[../]
[./porosity]
family = MONOMIAL
order = CONSTANT
[../]
[./permeability]
family = MONOMIAL
order = CONSTANT
[../]
[]
[AuxKernels]
[./mineral_conc]
type = PorousFlowPropertyAux
property = mineral_concentration
mineral_species = 0
variable = mineral_conc
[../]
[./porosity]
type = PorousFlowPropertyAux
property = porosity
variable = porosity
[../]
[./permeability]
type = PorousFlowPropertyAux
property = permeability
column = 0
row = 0
variable = permeability
[../]
[]
[Kernels]
[./precipitation_dissolution]
type = PorousFlowPreDis
mineral_density = 1000.0
stoichiometry = 1
variable = tracer_concentration
[../]
[]
[BCs]
[./constant_injection_of_tracer]
type = PorousFlowSink
variable = tracer_concentration
flux_function = -5E-3
boundary = injection_area
[../]
[./constant_outer_porepressure]
type = DirichletBC
variable = porepressure
value = 0
boundary = rmax
[../]
[]
[Modules]
[./FluidProperties]
[./the_simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 2E9
viscosity = 1.0E-3
density0 = 1000.0
[../]
[../]
[]
[Materials]
[./porosity]
type = PorousFlowPorosity
porosity_zero = 0.1
chemical = true
initial_mineral_concentrations = initial_and_reference_conc
reference_chemistry = initial_and_reference_conc
[../]
[./permeability_aquifer]
type = PorousFlowPermeabilityKozenyCarman
block = aquifer
k0 = 1E-14
m = 2
n = 3
phi0 = 0.1
poroperm_function = kozeny_carman_phi0
[../]
[./permeability_caps]
type = PorousFlowPermeabilityKozenyCarman
block = caps
k0 = 1E-15
k_anisotropy = '1 0 0 0 1 0 0 0 0.1'
m = 2
n = 3
phi0 = 0.1
poroperm_function = kozeny_carman_phi0
[../]
[./precipitation_dissolution]
type = PorousFlowAqueousPreDisChemistry
reference_temperature = 283.0
activation_energy = 1 # irrelevant because T=Tref
equilibrium_constants = eqm_k # equilibrium tracer concentration
kinetic_rate_constant = 1E-8
molar_volume = 1
num_reactions = 1
primary_activity_coefficients = 1
primary_concentrations = tracer_concentration
reactions = 1
specific_reactive_surface_area = 1
[../]
[./mineral_concentration]
type = PorousFlowAqueousPreDisMineral
[../]
[]
[Preconditioning]
active = basic
[./basic]
type = SMP
full = true
petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = ' asm lu NONZERO 2'
[../]
[./preferred_but_might_not_be_installed]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
[../]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1E6
dt = 1E5
nl_abs_tol = 1E-10
[]
[Outputs]
exodus = true
[]
modules/combined/test/tests/mortar_tm/2d/frictionless_second/finite_noaction.i
E_block = 1e7
E_plank = 1e7
elem = QUAD9
order = SECOND
name = 'finite_noaction'
[Mesh]
patch_size = 80
patch_update_strategy = auto
[./plank]
type = GeneratedMeshGenerator
dim = 2
xmin = -0.3
xmax = 0.3
ymin = -10
ymax = 10
nx = 2
ny = 67
elem_type = ${elem}
[../]
[./plank_sidesets]
type = RenameBoundaryGenerator
input = plank
old_boundary_id = '0 1 2 3'
new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
[../]
[./plank_id]
type = SubdomainIDGenerator
input = plank_sidesets
subdomain_id = 1
[../]
[./block]
type = GeneratedMeshGenerator
dim = 2
xmin = 0.31
xmax = 0.91
ymin = 7.7
ymax = 8.5
nx = 3
ny = 4
elem_type = ${elem}
[../]
[./block_id]
type = SubdomainIDGenerator
input = block
subdomain_id = 2
[../]
[./combined]
type = MeshCollectionGenerator
inputs = 'plank_id block_id'
[../]
[./block_rename]
type = RenameBlockGenerator
input = combined
old_block_id = '1 2'
new_block_name = 'plank block'
[../]
[./block_sidesets]
type = SideSetsFromPointsGenerator
input = block_rename
points = '0.6 7.7 0
0.91 8.0 0
0.6 8.5 0
0.31 8.0 0'
new_boundary = 'block_bottom block_right block_top block_left'
[../]
[./slave]
input = block_sidesets
type = LowerDBlockFromSidesetGenerator
sidesets = 'block_left'
new_block_id = '30'
new_block_name = 'frictionless_slave_subdomain'
[../]
[./master]
input = slave
type = LowerDBlockFromSidesetGenerator
sidesets = 'plank_right'
new_block_id = '20'
new_block_name = 'frictionless_master_subdomain'
[../]
[]
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Variables]
[./disp_x]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[./disp_y]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[./frictionless_normal_lm]
order = ${order}
block = 'frictionless_slave_subdomain'
[../]
[]
[Modules/TensorMechanics/Master]
[./action]
strain = FINITE
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'plank block'
[../]
[]
[Constraints]
[./lm]
type = NormalNodalLMMechanicalContact
slave = block_left
master = plank_right
variable = frictionless_normal_lm
master_variable = disp_x
disp_y = disp_y
ncp_function_type = min
use_displaced_mesh = true
[../]
[./normal_x]
type = NormalMortarMechanicalContact
master_boundary = plank_right
slave_boundary = block_left
master_subdomain = frictionless_master_subdomain
slave_subdomain = frictionless_slave_subdomain
variable = frictionless_normal_lm
slave_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = false
[../]
[./normal_y]
type = NormalMortarMechanicalContact
master_boundary = plank_right
slave_boundary = block_left
master_subdomain = frictionless_master_subdomain
slave_subdomain = frictionless_slave_subdomain
variable = frictionless_normal_lm
slave_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = false
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
preset = false
boundary = plank_left
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
preset = false
boundary = plank_bottom
value = 0.0
[../]
[./right_x]
type = FunctionDirichletBC
variable = disp_x
preset = false
boundary = block_right
function = '-0.04*sin(4*(t+1.5))+0.02'
[../]
[./right_y]
type = FunctionDirichletBC
variable = disp_y
preset = false
boundary = block_right
function = '-t'
[../]
[]
[Materials]
[./plank]
type = ComputeIsotropicElasticityTensor
block = 'plank'
poissons_ratio = 0.3
youngs_modulus = ${E_plank}
[../]
[./block]
type = ComputeIsotropicElasticityTensor
block = 'block'
poissons_ratio = 0.3
youngs_modulus = ${E_block}
[../]
[./stress]
type = ComputeFiniteStrainElasticStress
block = 'plank block'
[../]
[]
[Preconditioning]
[smp]
type = SMP
full = true
[]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu 1e-5 NONZERO 1e-15'
end_time = 13.5
dt = 0.1
dtmin = 0.1
timestep_tolerance = 1e-6
line_search = 'contact'
[]
[Postprocessors]
[./nl_its]
type = NumNonlinearIterations
[../]
[./total_nl_its]
type = CumulativeValuePostprocessor
postprocessor = nl_its
[../]
[./l_its]
type = NumLinearIterations
[../]
[./total_l_its]
type = CumulativeValuePostprocessor
postprocessor = l_its
[../]
[./contact]
type = ContactDOFSetSize
variable = frictionless_normal_lm
subdomain = frictionless_slave_subdomain
[../]
[./avg_hydro]
type = ElementAverageValue
variable = hydrostatic_stress
block = 'block'
[../]
[./max_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
[../]
[./min_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
value_type = min
[../]
[./avg_vonmises]
type = ElementAverageValue
variable = vonmises_stress
block = 'block'
[../]
[./max_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
[../]
[./min_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
value_type = min
[../]
[]
[Outputs]
exodus = true
file_base = ${name}
[./comp]
type = CSV
show = 'contact'
[../]
[./out]
type = CSV
file_base = '${name}_out'
[../]
[]
[Debug]
show_var_residual_norms = true
[]
modules/combined/test/tests/mortar_tm/2d/ad_frictionless_sec/small.i
E_block = 1e7
E_plank = 1e7
elem = QUAD9
order = SECOND
name = 'small'
[Mesh]
patch_size = 80
patch_update_strategy = auto
[./plank]
type = GeneratedMeshGenerator
dim = 2
xmin = -0.3
xmax = 0.3
ymin = -10
ymax = 10
nx = 2
ny = 67
elem_type = ${elem}
[../]
[./plank_sidesets]
type = RenameBoundaryGenerator
input = plank
old_boundary_id = '0 1 2 3'
new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
[../]
[./plank_id]
type = SubdomainIDGenerator
input = plank_sidesets
subdomain_id = 1
[../]
[./block]
type = GeneratedMeshGenerator
dim = 2
xmin = 0.31
xmax = 0.91
ymin = 7.7
ymax = 8.5
nx = 3
ny = 4
elem_type = ${elem}
[../]
[./block_id]
type = SubdomainIDGenerator
input = block
subdomain_id = 2
[../]
[./combined]
type = MeshCollectionGenerator
inputs = 'plank_id block_id'
[../]
[./block_rename]
type = RenameBlockGenerator
input = combined
old_block_id = '1 2'
new_block_name = 'plank block'
[../]
[./block_sidesets]
type = SideSetsFromPointsGenerator
input = block_rename
points = '0.6 7.7 0
0.91 8.0 0
0.6 8.5 0
0.31 8.0 0'
new_boundary = 'block_bottom block_right block_top block_left'
[../]
[]
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Variables]
[./disp_x]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[./disp_y]
order = ${order}
block = 'plank block'
scaling = ${fparse 2.0 / (E_plank + E_block)}
[../]
[]
[Modules/TensorMechanics/Master]
[./action]
generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
block = 'plank block'
use_automatic_differentiation = true
[../]
[]
[Contact]
[./frictionless]
mesh = block_sidesets
master = plank_right
slave = block_left
formulation = mortar
system = constraint
[../]
[]
[BCs]
[./left_x]
type = DirichletBC
variable = disp_x
boundary = plank_left
value = 0.0
[../]
[./left_y]
type = DirichletBC
variable = disp_y
boundary = plank_bottom
value = 0.0
[../]
[./right_x]
type = ADFunctionDirichletBC
variable = disp_x
boundary = block_right
function = '-0.04*sin(4*(t+1.5))+0.02'
[../]
[./right_y]
type = ADFunctionDirichletBC
variable = disp_y
boundary = block_right
function = '-t'
[../]
[]
[Materials]
[./plank]
type = ComputeIsotropicElasticityTensor
block = 'plank'
poissons_ratio = 0.3
youngs_modulus = ${E_plank}
[../]
[./block]
type = ComputeIsotropicElasticityTensor
block = 'block'
poissons_ratio = 0.3
youngs_modulus = ${E_block}
[../]
[./stress]
type = ADComputeLinearElasticStress
block = 'plank block'
[../]
[]
[Executioner]
type = Transient
solve_type = 'NEWTON'
petsc_options = '-snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
petsc_options_value = 'lu 1e-5 NONZERO 1e-15'
end_time = 13.5
dt = 0.1
dtmin = 0.1
timestep_tolerance = 1e-6
line_search = 'contact'
[]
[Postprocessors]
[./nl_its]
type = NumNonlinearIterations
[../]
[./total_nl_its]
type = CumulativeValuePostprocessor
postprocessor = nl_its
[../]
[./l_its]
type = NumLinearIterations
[../]
[./total_l_its]
type = CumulativeValuePostprocessor
postprocessor = l_its
[../]
[./contact]
type = ContactDOFSetSize
variable = frictionless_normal_lm
subdomain = frictionless_slave_subdomain
[../]
[./avg_hydro]
type = ElementAverageValue
variable = hydrostatic_stress
block = 'block'
[../]
[./max_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
[../]
[./min_hydro]
type = ElementExtremeValue
variable = hydrostatic_stress
block = 'block'
value_type = min
[../]
[./avg_vonmises]
type = ElementAverageValue
variable = vonmises_stress
block = 'block'
[../]
[./max_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
[../]
[./min_vonmises]
type = ElementExtremeValue
variable = vonmises_stress
block = 'block'
value_type = min
[../]
[]
[Outputs]
exodus = true
file_base = ${name}
[./comp]
type = CSV
show = 'contact'
[../]
[./out]
type = CSV
file_base = '${name}_out'
[../]
[]
[Debug]
show_var_residual_norms = true
[]