Compute Extra Stress van der Waals Gas

Computes a hydrostatic stress corresponding to the pressure of a van der Waals gas that is added as an extra_stress to the stress computed by the constitutive model

Description

The class ComputeExtraStressVDWGas adds an additional hydrostatic stress term, ( $var element = document.getElementById("moose-equation-c735c5c1-60fd-4d7d-8711-93fc404ea4e0");katex.render("\\sigma^g_{ij}", element, {displayMode:false,throwOnError:false,macros:{"\\pf":"\\frac{\\partial #1}{\\partial #2}"}});$ ), to the residual calculation after the constitutive model calculation of the stress, as shown in Eq. (1). This additional hydrostatic stress represents to the pressure exerted by a van der Waals gas.

The diagonal components of the stress tensor are given by $(1)var element = document.getElementById("moose-equation-f5e7c489-1f35-4098-a26b-ba2fcbbcf1e1");katex.render(" \\sigma^g_{ii} = -\\frac{kT}{\\left(\\frac{V_a}{c_g} - b \\right) E^* }", element, {displayMode:true,throwOnError:false,macros:{"\\pf":"\\frac{\\partial #1}{\\partial #2}"}});$ where $var element = document.getElementById("moose-equation-0d6e96b6-ba29-4a75-b074-f814a76a8d3a");katex.render("k", element, {displayMode:false,throwOnError:false,macros:{"\\pf":"\\frac{\\partial #1}{\\partial #2}"}});$ is Boltzmann's constant, $var element = document.getElementById("moose-equation-ae1482a9-1747-44fe-84a3-c0a0d4873c14");katex.render("T", element, {displayMode:false,throwOnError:false,macros:{"\\pf":"\\frac{\\partial #1}{\\partial #2}"}});$ is the temperature, $var element = document.getElementById("moose-equation-244ff0a4-4160-4c82-916f-b1f4d12c1f67");katex.render("V_a", element, {displayMode:false,throwOnError:false,macros:{"\\pf":"\\frac{\\partial #1}{\\partial #2}"}});$ is the atomic volume of the lattice atoms in the solid surrounding the gas phase, $var element = document.getElementById("moose-equation-d7a7523c-febf-41b7-8480-fa435f47733d");katex.render("c_g", element, {displayMode:false,throwOnError:false,macros:{"\\pf":"\\frac{\\partial #1}{\\partial #2}"}});$ is the local gas atomic fraction (relative to the surrounding solid), $var element = document.getElementById("moose-equation-79c9aaae-4593-49f4-b738-e6b7a41c1a89");katex.render("b", element, {displayMode:false,throwOnError:false,macros:{"\\pf":"\\frac{\\partial #1}{\\partial #2}"}});$ is the van der Waals gas hard-sphere exclusion volume, and $var element = document.getElementById("moose-equation-ad538da6-46bf-4dcd-b003-254ae6ea26db");katex.render("E^* $ is an optional scale factor for non-dimensionalization. The off-diagonal components are $\\sigma^g_{ij} = 0", element, {displayMode:false,throwOnError:false,macros:{"\\pf":"\\frac{\\partial #1}{\\partial #2}"}});$ for $var element = document.getElementById("moose-equation-6c087238-0711-407f-8fb2-57e613780dfc");katex.render("i \\neq j", element, {displayMode:false,throwOnError:false,macros:{"\\pf":"\\frac{\\partial #1}{\\partial #2}"}});$ .

Example Input File Syntax

[./gas_pressure]
  type = ComputeExtraStressVDWGas
  T = T
  b = b
  cg = cgb
  Va = Va
  nondim_factor = 63e9
  base_name = bub
  outputs = exodus
[../]

/opt/civet/build_0/moose/modules/combined/test/tests/surface_tension_KKS/surface_tension_VDWgas.i

# Test for ComputeExtraStressVDWGas
# Gas bubble with r = 15 nm in a solid matrix
# The gas pressure is counterbalanced by the surface tension of the solid-gas interface,
# which is included with ComputeSurfaceTensionKKS

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 300
  xmin = 0
  xmax = 30
[]

[Problem]
  coord_type = RSPHERICAL
[]

[GlobalParams]
  displacements = 'disp_x'
[]

[Variables]
  # order parameter
  [./eta]
    order = FIRST
    family = LAGRANGE
  [../]

  # gas concentration
  [./cg]
    order = FIRST
    family = LAGRANGE
  [../]

  # vacancy concentration
  [./cv]
    order = FIRST
    family = LAGRANGE
  [../]

  # gas chemical potential
  [./wg]
    order = FIRST
    family = LAGRANGE
  [../]

  # vacancy chemical potential
  [./wv]
    order = FIRST
    family = LAGRANGE
  [../]

  # Matrix phase gas concentration
  [./cgm]
    order = FIRST
    family = LAGRANGE
    initial_condition = 1.01e-31
  [../]

  # Matrix phase vacancy concentration
  [./cvm]
    order = FIRST
    family = LAGRANGE
    initial_condition = 2.25e-11
  [../]

  # Bubble phase gas concentration
  [./cgb]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.2714
  [../]

  # Bubble phase vacancy concentration
  [./cvb]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.7286
  [../]
[]

[ICs]
  [./eta_ic]
    variable = eta
    type = FunctionIC
    function = ic_func_eta
  [../]
  [./cv_ic]
    variable = cv
    type = FunctionIC
    function = ic_func_cv
  [../]
  [./cg_ic]
    variable = cg
    type = FunctionIC
    function = ic_func_cg
  [../]
[]

[Functions]
  [./ic_func_eta]
    type = ParsedFunction
    value = 'r:=sqrt(x^2+y^2+z^2);0.5*(1.0-tanh((r-r0)/delta_eta/sqrt(2.0)))'
    vars = 'delta_eta r0'
    vals = '0.321     15'
  [../]
  [./ic_func_cv]
    type = ParsedFunction
    value = 'r:=sqrt(x^2+y^2+z^2);eta_an:=0.5*(1.0-tanh((r-r0)/delta/sqrt(2.0)));cvbubinit*eta_an^3*(6*eta_an^2-15*eta_an+10)+cvmatrixinit*(1-eta_an^3*(6*eta_an^2-15*eta_an+10))'
    vars = 'delta r0  cvbubinit cvmatrixinit'
    vals = '0.321 15  0.7286    2.25e-11'
  [../]
  [./ic_func_cg]
    type = ParsedFunction
    value = 'r:=sqrt(x^2+y^2+z^2);eta_an:=0.5*(1.0-tanh((r-r0)/delta/sqrt(2.0)));cgbubinit*eta_an^3*(6*eta_an^2-15*eta_an+10)+cgmatrixinit*(1-eta_an^3*(6*eta_an^2-15*eta_an+10))'
    vars = 'delta r0  cgbubinit cgmatrixinit'
    vals = '0.321 15  0.2714    1.01e-31'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    generate_output = 'hydrostatic_stress stress_xx stress_yy stress_zz'
  [../]
[]

[Kernels]
  # enforce cg = (1-h(eta))*cgm + h(eta)*cgb
  [./PhaseConc_g]
    type = KKSPhaseConcentration
    ca       = cgm
    variable = cgb
    c        = cg
    eta      = eta
  [../]

  # enforce cv = (1-h(eta))*cvm + h(eta)*cvb
  [./PhaseConc_v]
    type = KKSPhaseConcentration
    ca       = cvm
    variable = cvb
    c        = cv
    eta      = eta
  [../]

  # enforce pointwise equality of chemical potentials
  [./ChemPotVacancies]
    type = KKSPhaseChemicalPotential
    variable = cvm
    cb       = cvb
    fa_name  = f_total_matrix
    fb_name  = f_total_bub
    args_a = 'cgm'
    args_b = 'cgb'
  [../]
  [./ChemPotGas]
    type = KKSPhaseChemicalPotential
    variable = cgm
    cb       = cgb
    fa_name  = f_total_matrix
    fb_name  = f_total_bub
    args_a = 'cvm'
    args_b = 'cvb'
  [../]

  #
  # Cahn-Hilliard Equations
  #
  [./CHBulk_g]
    type = KKSSplitCHCRes
    variable = cg
    ca       = cgm
    fa_name  = f_total_matrix
    w        = wg
    args_a   = 'cvm'
  [../]
  [./CHBulk_v]
    type = KKSSplitCHCRes
    variable = cv
    ca       = cvm
    fa_name  = f_total_matrix
    w        = wv
    args_a   = 'cgm'
  [../]

  [./dcgdt]
    type = CoupledTimeDerivative
    variable = wg
    v = cg
  [../]
  [./dcvdt]
    type = CoupledTimeDerivative
    variable = wv
    v = cv
  [../]

  [./wgkernel]
    type = SplitCHWRes
    mob_name = M
    variable = wg
  [../]
  [./wvkernel]
    type = SplitCHWRes
    mob_name = M
    variable = wv
  [../]

  #
  # Allen-Cahn Equation
  #
  [./ACBulkF]
    type = KKSACBulkF
    variable = eta
    fa_name  = f_total_matrix
    fb_name  = f_total_bub
    w        = 0.356
    args = 'cvm cvb cgm cgb'
  [../]
  [./ACBulkCv]
    type = KKSACBulkC
    variable = eta
    ca       = cvm
    cb       = cvb
    fa_name  = f_total_matrix
    args     = 'cgm'
  [../]
  [./ACBulkCg]
    type = KKSACBulkC
    variable = eta
    ca       = cgm
    cb       = cgb
    fa_name  = f_total_matrix
    args     = 'cvm'
  [../]
  [./ACInterface]
    type = ACInterface
    variable = eta
    kappa_name = kappa
  [../]
  [./detadt]
    type = TimeDerivative
    variable = eta
  [../]
[]

[Materials]
  # Chemical free energy of the matrix
  [./fm]
    type = DerivativeParsedMaterial
    f_name = fm
    args = 'cvm cgm'
    material_property_names = 'kvmatrix kgmatrix cvmatrixeq cgmatrixeq'
    function = '0.5*kvmatrix*(cvm-cvmatrixeq)^2 + 0.5*kgmatrix*(cgm-cgmatrixeq)^2'
  [../]
# Elastic energy of the matrix
  [./elastic_free_energy_m]
    type = ElasticEnergyMaterial
    base_name = matrix
    f_name = fe_m
    args = ' '
  [../]
# Total free energy of the matrix
  [./Total_energy_matrix]
    type = DerivativeSumMaterial
    f_name = f_total_matrix
    sum_materials = 'fm fe_m'
    args = 'cvm cgm'
  [../]

  # Free energy of the bubble phase
  [./fb]
    type = DerivativeParsedMaterial
    f_name = fb
    args = 'cvb cgb'
    material_property_names = 'kToverV nQ Va b f0 kpen kgbub kvbub cvbubeq cgbubeq'
    function = '0.5*kgbub*(cvb-cvbubeq)^2 + 0.5*kvbub*(cgb-cgbubeq)^2'
  [../]

# Elastic energy of the bubble
  [./elastic_free_energy_p]
    type = ElasticEnergyMaterial
    base_name = bub
    f_name = fe_b
    args = ' '
  [../]

# Total free energy of the bubble
  [./Total_energy_bub]
    type = DerivativeSumMaterial
    f_name = f_total_bub
    sum_materials = 'fb fe_b'
    # sum_materials = 'fb'
    args = 'cvb cgb'
  [../]

  # h(eta)
  [./h_eta]
    type = SwitchingFunctionMaterial
    h_order = HIGH
    eta = eta
  [../]

  # g(eta)
  [./g_eta]
    type = BarrierFunctionMaterial
    g_order = SIMPLE
    eta = eta
  [../]

  # constant properties
  [./constants]
    type = GenericConstantMaterial
    prop_names  = 'M   L   kappa  Va      kvmatrix  kgmatrix  kgbub kvbub f0      kpen  cvbubeq cgbubeq b      T'
    prop_values = '0.7 0.7 0.0368 0.03629 223.16    223.16    2.23  2.23  0.0224  1.0   0.6076  0.3924  0.085  800'
  [../]
  [./cvmatrixeq]
    type = ParsedMaterial
    f_name = cvmatrixeq
    material_property_names = 'T'
    constant_names        = 'kB           Efv'
    constant_expressions  = '8.6173324e-5 1.69'
    function = 'exp(-Efv/(kB*T))'
  [../]
  [./cgmatrixeq]
    type = ParsedMaterial
    f_name = cgmatrixeq
    material_property_names = 'T'
    constant_names        = 'kB           Efg'
    constant_expressions  = '8.6173324e-5 4.92'
    function = 'exp(-Efg/(kB*T))'
  [../]
  [./kToverV]
    type = ParsedMaterial
    f_name = kToverV
    material_property_names = 'T Va'
    constant_names        = 'k          C44dim' #k in J/K and dimensional C44 in J/m^3
    constant_expressions  = '1.38e-23   63e9'
    function = 'k*T*1e27/Va/C44dim'
  [../]
  [./nQ]
    type = ParsedMaterial
    f_name = nQ
    material_property_names = 'T'
    constant_names        = 'k          Pi      M         hbar' #k in J/K, M is Xe atomic mass in kg, hbar in J s
    constant_expressions  = '1.38e-23   3.14159 2.18e-25  1.05459e-34'
    function = '(M*k*T/2/Pi/hbar^2)^1.5 * 1e-27' #1e-27 converts from #/m^3 to #/nm^3
  [../]

  #Mechanical properties
  [./Stiffness_matrix]
    type = ComputeElasticityTensor
    C_ijkl = '0.778 0.7935'
    fill_method = symmetric_isotropic
    base_name = matrix
  [../]
  [./Stiffness_bub]
    type = ComputeElasticityTensor
    C_ijkl = '0.0778 0.07935'
    fill_method = symmetric_isotropic
    base_name = bub
  [../]
  [./strain_matrix]
    type = ComputeRSphericalSmallStrain
    base_name = matrix
  [../]
  [./strain_bub]
    type = ComputeRSphericalSmallStrain
    base_name = bub
  [../]
  [./stress_matrix]
    type = ComputeLinearElasticStress
    base_name = matrix
  [../]
  [./stress_bub]
    type = ComputeLinearElasticStress
    base_name = bub
  [../]
  [./global_stress]
    type = TwoPhaseStressMaterial
    base_A = matrix
    base_B = bub
  [../]
  [./surface_tension]
    type = ComputeSurfaceTensionKKS
    v = eta
    kappa_name = kappa
    w = 0.356
  [../]
  [./gas_pressure]
    type = ComputeExtraStressVDWGas
    T = T
    b = b
    cg = cgb
    Va = Va
    nondim_factor = 63e9
    base_name = bub
    outputs = exodus
  [../]
[]

[BCs]
  [./left_r]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
[]

[Preconditioning]
  [./full]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -sub_pc_type   -sub_pc_factor_shift_type'
  petsc_options_value = 'asm       lu            nonzero'

  l_max_its = 30
  nl_max_its = 15
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-10
  nl_abs_tol = 1e-11
  num_steps = 2
  dt = 0.5
[]

[Outputs]
  exodus = true
[]

Input Parameters

TTemperature in K
C++ Type:MaterialPropertyName
Options:
Description:Temperature in K
VaAtomic volume of lattice atoms in nm^3
C++ Type:MaterialPropertyName
Options:
Description:Atomic volume of lattice atoms in nm^3
bHard-sphere exclusion volume of van der Waals gas atoms in nm^3
C++ Type:MaterialPropertyName
Options:
Description:Hard-sphere exclusion volume of van der Waals gas atoms in nm^3
cgGas concentration (relative to lattice atoms)
C++ Type:std::vector
Options:
Description:Gas concentration (relative to lattice atoms)

Required Parameters

base_nameOptional parameter that allows the user to define multiple mechanics material systems on the same block, i.e. for multiple phases
C++ Type:std::string
Options:
Description:Optional parameter that allows the user to define multiple mechanics material systems on the same block, i.e. for multiple phases
blockThe list of block ids (SubdomainID) that this object will be applied
C++ Type:std::vector
Options:
Description:The list of block ids (SubdomainID) that this object will be applied
boundaryThe list of boundary IDs from the mesh where this boundary condition applies
C++ Type:std::vector
Options:
Description:The list of boundary IDs from the mesh where this boundary condition applies
computeTrueWhen false, MOOSE will not call compute methods on this material. The user must call computeProperties() after retrieving the MaterialBase via MaterialBasePropertyInterface::getMaterialBase(). Non-computed MaterialBases are not sorted for dependencies.
Default:True
C++ Type:bool
Options:
Description:When false, MOOSE will not call compute methods on this material. The user must call computeProperties() after retrieving the MaterialBase via MaterialBasePropertyInterface::getMaterialBase(). Non-computed MaterialBases are not sorted for dependencies.
constant_onNONEWhen ELEMENT, MOOSE will only call computeQpProperties() for the 0th quadrature point, and then copy that value to the other qps.When SUBDOMAIN, MOOSE will only call computeSubdomainProperties() for the 0th quadrature point, and then copy that value to the other qps. Evaluations on element qps will be skipped
Default:NONE
C++ Type:MooseEnum
Options:NONE ELEMENT SUBDOMAIN
Description:When ELEMENT, MOOSE will only call computeQpProperties() for the 0th quadrature point, and then copy that value to the other qps.When SUBDOMAIN, MOOSE will only call computeSubdomainProperties() for the 0th quadrature point, and then copy that value to the other qps. Evaluations on element qps will be skipped
nondim_factor1Optional factor to non-dimensionalize pressure (pressure is calculated in Pa, set this factor to characteristic energy density used for non-dimensionalization if desired)
Default:1
C++ Type:double
Options:
Description:Optional factor to non-dimensionalize pressure (pressure is calculated in Pa, set this factor to characteristic energy density used for non-dimensionalization if desired)

Optional Parameters

control_tagsAdds user-defined labels for accessing object parameters via control logic.
C++ Type:std::vector
Options:
Description:Adds user-defined labels for accessing object parameters via control logic.
enableTrueSet the enabled status of the MooseObject.
Default:True
C++ Type:bool
Options:
Description:Set the enabled status of the MooseObject.
implicitTrueDetermines whether this object is calculated using an implicit or explicit form
Default:True
C++ Type:bool
Options:
Description:Determines whether this object is calculated using an implicit or explicit form
seed0The seed for the master random number generator
Default:0
C++ Type:unsigned int
Options:
Description:The seed for the master random number generator
use_displaced_meshFalseWhether or not this object should use the displaced mesh for computation. Note that in the case this is true but no displacements are provided in the Mesh block the undisplaced mesh will still be used.
Default:False
C++ Type:bool
Options:
Description:Whether or not this object should use the displaced mesh for computation. Note that in the case this is true but no displacements are provided in the Mesh block the undisplaced mesh will still be used.

Advanced Parameters

output_propertiesList of material properties, from this material, to output (outputs must also be defined to an output type)
C++ Type:std::vector
Options:
Description:List of material properties, from this material, to output (outputs must also be defined to an output type)
outputsnone Vector of output names were you would like to restrict the output of variables(s) associated with this object
Default:none
C++ Type:std::vector
Options:
Description:Vector of output names were you would like to restrict the output of variables(s) associated with this object

Outputs Parameters

Input Files

modules/combined/test/tests/surface_tension_KKS/surface_tension_VDWgas.i

modules/combined/test/tests/surface_tension_KKS/surface_tension_VDWgas.i

# Test for ComputeExtraStressVDWGas
# Gas bubble with r = 15 nm in a solid matrix
# The gas pressure is counterbalanced by the surface tension of the solid-gas interface,
# which is included with ComputeSurfaceTensionKKS

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 300
  xmin = 0
  xmax = 30
[]

[Problem]
  coord_type = RSPHERICAL
[]

[GlobalParams]
  displacements = 'disp_x'
[]

[Variables]
  # order parameter
  [./eta]
    order = FIRST
    family = LAGRANGE
  [../]

  # gas concentration
  [./cg]
    order = FIRST
    family = LAGRANGE
  [../]

  # vacancy concentration
  [./cv]
    order = FIRST
    family = LAGRANGE
  [../]


  # gas chemical potential
  [./wg]
    order = FIRST
    family = LAGRANGE
  [../]

  # vacancy chemical potential
  [./wv]
    order = FIRST
    family = LAGRANGE
  [../]


  # Matrix phase gas concentration
  [./cgm]
    order = FIRST
    family = LAGRANGE
    initial_condition = 1.01e-31
  [../]

  # Matrix phase vacancy concentration
  [./cvm]
    order = FIRST
    family = LAGRANGE
    initial_condition = 2.25e-11
  [../]

  # Bubble phase gas concentration
  [./cgb]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.2714
  [../]

  # Bubble phase vacancy concentration
  [./cvb]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.7286
  [../]
[]

[ICs]
  [./eta_ic]
    variable = eta
    type = FunctionIC
    function = ic_func_eta
  [../]
  [./cv_ic]
    variable = cv
    type = FunctionIC
    function = ic_func_cv
  [../]
  [./cg_ic]
    variable = cg
    type = FunctionIC
    function = ic_func_cg
  [../]
[]

[Functions]
  [./ic_func_eta]
    type = ParsedFunction
    value = 'r:=sqrt(x^2+y^2+z^2);0.5*(1.0-tanh((r-r0)/delta_eta/sqrt(2.0)))'
    vars = 'delta_eta r0'
    vals = '0.321     15'
  [../]
  [./ic_func_cv]
    type = ParsedFunction
    value = 'r:=sqrt(x^2+y^2+z^2);eta_an:=0.5*(1.0-tanh((r-r0)/delta/sqrt(2.0)));cvbubinit*eta_an^3*(6*eta_an^2-15*eta_an+10)+cvmatrixinit*(1-eta_an^3*(6*eta_an^2-15*eta_an+10))'
    vars = 'delta r0  cvbubinit cvmatrixinit'
    vals = '0.321 15  0.7286    2.25e-11'
  [../]
  [./ic_func_cg]
    type = ParsedFunction
    value = 'r:=sqrt(x^2+y^2+z^2);eta_an:=0.5*(1.0-tanh((r-r0)/delta/sqrt(2.0)));cgbubinit*eta_an^3*(6*eta_an^2-15*eta_an+10)+cgmatrixinit*(1-eta_an^3*(6*eta_an^2-15*eta_an+10))'
    vars = 'delta r0  cgbubinit cgmatrixinit'
    vals = '0.321 15  0.2714    1.01e-31'
  [../]
[]



[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    generate_output = 'hydrostatic_stress stress_xx stress_yy stress_zz'
  [../]
[]

[Kernels]
  # enforce cg = (1-h(eta))*cgm + h(eta)*cgb
  [./PhaseConc_g]
    type = KKSPhaseConcentration
    ca       = cgm
    variable = cgb
    c        = cg
    eta      = eta
  [../]

  # enforce cv = (1-h(eta))*cvm + h(eta)*cvb
  [./PhaseConc_v]
    type = KKSPhaseConcentration
    ca       = cvm
    variable = cvb
    c        = cv
    eta      = eta
  [../]

  # enforce pointwise equality of chemical potentials
  [./ChemPotVacancies]
    type = KKSPhaseChemicalPotential
    variable = cvm
    cb       = cvb
    fa_name  = f_total_matrix
    fb_name  = f_total_bub
    args_a = 'cgm'
    args_b = 'cgb'
  [../]
  [./ChemPotGas]
    type = KKSPhaseChemicalPotential
    variable = cgm
    cb       = cgb
    fa_name  = f_total_matrix
    fb_name  = f_total_bub
    args_a = 'cvm'
    args_b = 'cvb'
  [../]

  #
  # Cahn-Hilliard Equations
  #
  [./CHBulk_g]
    type = KKSSplitCHCRes
    variable = cg
    ca       = cgm
    fa_name  = f_total_matrix
    w        = wg
    args_a   = 'cvm'
  [../]
  [./CHBulk_v]
    type = KKSSplitCHCRes
    variable = cv
    ca       = cvm
    fa_name  = f_total_matrix
    w        = wv
    args_a   = 'cgm'
  [../]

  [./dcgdt]
    type = CoupledTimeDerivative
    variable = wg
    v = cg
  [../]
  [./dcvdt]
    type = CoupledTimeDerivative
    variable = wv
    v = cv
  [../]

  [./wgkernel]
    type = SplitCHWRes
    mob_name = M
    variable = wg
  [../]
  [./wvkernel]
    type = SplitCHWRes
    mob_name = M
    variable = wv
  [../]

  #
  # Allen-Cahn Equation
  #
  [./ACBulkF]
    type = KKSACBulkF
    variable = eta
    fa_name  = f_total_matrix
    fb_name  = f_total_bub
    w        = 0.356
    args = 'cvm cvb cgm cgb'
  [../]
  [./ACBulkCv]
    type = KKSACBulkC
    variable = eta
    ca       = cvm
    cb       = cvb
    fa_name  = f_total_matrix
    args     = 'cgm'
  [../]
  [./ACBulkCg]
    type = KKSACBulkC
    variable = eta
    ca       = cgm
    cb       = cgb
    fa_name  = f_total_matrix
    args     = 'cvm'
  [../]
  [./ACInterface]
    type = ACInterface
    variable = eta
    kappa_name = kappa
  [../]
  [./detadt]
    type = TimeDerivative
    variable = eta
  [../]
[]

[Materials]
  # Chemical free energy of the matrix
  [./fm]
    type = DerivativeParsedMaterial
    f_name = fm
    args = 'cvm cgm'
    material_property_names = 'kvmatrix kgmatrix cvmatrixeq cgmatrixeq'
    function = '0.5*kvmatrix*(cvm-cvmatrixeq)^2 + 0.5*kgmatrix*(cgm-cgmatrixeq)^2'
  [../]
# Elastic energy of the matrix
  [./elastic_free_energy_m]
    type = ElasticEnergyMaterial
    base_name = matrix
    f_name = fe_m
    args = ' '
  [../]
# Total free energy of the matrix
  [./Total_energy_matrix]
    type = DerivativeSumMaterial
    f_name = f_total_matrix
    sum_materials = 'fm fe_m'
    args = 'cvm cgm'
  [../]

  # Free energy of the bubble phase
  [./fb]
    type = DerivativeParsedMaterial
    f_name = fb
    args = 'cvb cgb'
    material_property_names = 'kToverV nQ Va b f0 kpen kgbub kvbub cvbubeq cgbubeq'
    function = '0.5*kgbub*(cvb-cvbubeq)^2 + 0.5*kvbub*(cgb-cgbubeq)^2'
  [../]

# Elastic energy of the bubble
  [./elastic_free_energy_p]
    type = ElasticEnergyMaterial
    base_name = bub
    f_name = fe_b
    args = ' '
  [../]

# Total free energy of the bubble
  [./Total_energy_bub]
    type = DerivativeSumMaterial
    f_name = f_total_bub
    sum_materials = 'fb fe_b'
    # sum_materials = 'fb'
    args = 'cvb cgb'
  [../]

  # h(eta)
  [./h_eta]
    type = SwitchingFunctionMaterial
    h_order = HIGH
    eta = eta
  [../]

  # g(eta)
  [./g_eta]
    type = BarrierFunctionMaterial
    g_order = SIMPLE
    eta = eta
  [../]

  # constant properties
  [./constants]
    type = GenericConstantMaterial
    prop_names  = 'M   L   kappa  Va      kvmatrix  kgmatrix  kgbub kvbub f0      kpen  cvbubeq cgbubeq b      T'
    prop_values = '0.7 0.7 0.0368 0.03629 223.16    223.16    2.23  2.23  0.0224  1.0   0.6076  0.3924  0.085  800'
  [../]
  [./cvmatrixeq]
    type = ParsedMaterial
    f_name = cvmatrixeq
    material_property_names = 'T'
    constant_names        = 'kB           Efv'
    constant_expressions  = '8.6173324e-5 1.69'
    function = 'exp(-Efv/(kB*T))'
  [../]
  [./cgmatrixeq]
    type = ParsedMaterial
    f_name = cgmatrixeq
    material_property_names = 'T'
    constant_names        = 'kB           Efg'
    constant_expressions  = '8.6173324e-5 4.92'
    function = 'exp(-Efg/(kB*T))'
  [../]
  [./kToverV]
    type = ParsedMaterial
    f_name = kToverV
    material_property_names = 'T Va'
    constant_names        = 'k          C44dim' #k in J/K and dimensional C44 in J/m^3
    constant_expressions  = '1.38e-23   63e9'
    function = 'k*T*1e27/Va/C44dim'
  [../]
  [./nQ]
    type = ParsedMaterial
    f_name = nQ
    material_property_names = 'T'
    constant_names        = 'k          Pi      M         hbar' #k in J/K, M is Xe atomic mass in kg, hbar in J s
    constant_expressions  = '1.38e-23   3.14159 2.18e-25  1.05459e-34'
    function = '(M*k*T/2/Pi/hbar^2)^1.5 * 1e-27' #1e-27 converts from #/m^3 to #/nm^3
  [../]

  #Mechanical properties
  [./Stiffness_matrix]
    type = ComputeElasticityTensor
    C_ijkl = '0.778 0.7935'
    fill_method = symmetric_isotropic
    base_name = matrix
  [../]
  [./Stiffness_bub]
    type = ComputeElasticityTensor
    C_ijkl = '0.0778 0.07935'
    fill_method = symmetric_isotropic
    base_name = bub
  [../]
  [./strain_matrix]
    type = ComputeRSphericalSmallStrain
    base_name = matrix
  [../]
  [./strain_bub]
    type = ComputeRSphericalSmallStrain
    base_name = bub
  [../]
  [./stress_matrix]
    type = ComputeLinearElasticStress
    base_name = matrix
  [../]
  [./stress_bub]
    type = ComputeLinearElasticStress
    base_name = bub
  [../]
  [./global_stress]
    type = TwoPhaseStressMaterial
    base_A = matrix
    base_B = bub
  [../]
  [./surface_tension]
    type = ComputeSurfaceTensionKKS
    v = eta
    kappa_name = kappa
    w = 0.356
  [../]
  [./gas_pressure]
    type = ComputeExtraStressVDWGas
    T = T
    b = b
    cg = cgb
    Va = Va
    nondim_factor = 63e9
    base_name = bub
    outputs = exodus
  [../]
[]

[BCs]
  [./left_r]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
[]

[Preconditioning]
  [./full]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -sub_pc_type   -sub_pc_factor_shift_type'
  petsc_options_value = 'asm       lu            nonzero'

  l_max_its = 30
  nl_max_its = 15
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-10
  nl_abs_tol = 1e-11
  num_steps = 2
  dt = 0.5
[]

[Outputs]
  exodus = true
[]

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