- variableThe name of the variable that this Kernel operates on
C++ Type:NonlinearVariableName
Description:The name of the variable that this Kernel operates on
MatDiffusion
Diffusion equation Kernel that takes an isotropic Diffusivity from a material property
Implements the term where the diffusion coefficient (diffusivity) is provided by a FunctionMaterial function material (see Phase Field Module for more information), is the non-linear variable the kernel is operating on.
This kernel can be used in a coupled form if the optional v variable is specified. This allows applying the diffusion operator to a variable given by v, which is different from the kernel variable.
can depend on arbitrary non-linear variables (args). The complete Jacobian contributions are provided by the kernel. To build the Jacobian the kernel uses all derivatives of with respect to the kernel variable and the variables specified in args.
Input Parameters
- argsOptional vector of arguments for the diffusivity. If provided and diffusivity is a derivative parsed material, Jacobian contributions from the diffusivity will be automatically computed
C++ Type:std::vector
Options:
Description:Optional vector of arguments for the diffusivity. If provided and diffusivity is a derivative parsed material, Jacobian contributions from the diffusivity will be automatically computed
- blockThe list of block ids (SubdomainID) that this object will be applied
C++ Type:std::vector
Options:
Description:The list of block ids (SubdomainID) that this object will be applied
- concDeprecated! Use 'v' instead
C++ Type:std::vector
Options:
Description:Deprecated! Use 'v' instead
- diffusivityDThe diffusivity value or material property
Default:D
C++ Type:MaterialPropertyName
Options:
Description:The diffusivity value or material property
- displacementsThe displacements
C++ Type:std::vector
Options:
Description:The displacements
- vCoupled concentration variable for kernel to operate on; if this is not specified, the kernel's nonlinear variable will be used as usual
C++ Type:std::vector
Options:
Description:Coupled concentration variable for kernel to operate on; if this is not specified, the kernel's nonlinear variable will be used as usual
Optional Parameters
- control_tagsAdds user-defined labels for accessing object parameters via control logic.
C++ Type:std::vector
Options:
Description:Adds user-defined labels for accessing object parameters via control logic.
- diag_save_inThe name of auxiliary variables to save this Kernel's diagonal Jacobian contributions to. Everything about that variable must match everything about this variable (the type, what blocks it's on, etc.)
C++ Type:std::vector
Options:
Description:The name of auxiliary variables to save this Kernel's diagonal Jacobian contributions to. Everything about that variable must match everything about this variable (the type, what blocks it's on, etc.)
- enableTrueSet the enabled status of the MooseObject.
Default:True
C++ Type:bool
Options:
Description:Set the enabled status of the MooseObject.
- implicitTrueDetermines whether this object is calculated using an implicit or explicit form
Default:True
C++ Type:bool
Options:
Description:Determines whether this object is calculated using an implicit or explicit form
- save_inThe name of auxiliary variables to save this Kernel's residual contributions to. Everything about that variable must match everything about this variable (the type, what blocks it's on, etc.)
C++ Type:std::vector
Options:
Description:The name of auxiliary variables to save this Kernel's residual contributions to. Everything about that variable must match everything about this variable (the type, what blocks it's on, etc.)
- seed0The seed for the master random number generator
Default:0
C++ Type:unsigned int
Options:
Description:The seed for the master random number generator
- use_displaced_meshFalseWhether or not this object should use the displaced mesh for computation. Note that in the case this is true but no displacements are provided in the Mesh block the undisplaced mesh will still be used.
Default:False
C++ Type:bool
Options:
Description:Whether or not this object should use the displaced mesh for computation. Note that in the case this is true but no displacements are provided in the Mesh block the undisplaced mesh will still be used.
Advanced Parameters
- extra_matrix_tagsThe extra tags for the matrices this Kernel should fill
C++ Type:std::vector
Options:
Description:The extra tags for the matrices this Kernel should fill
- extra_vector_tagsThe extra tags for the vectors this Kernel should fill
C++ Type:std::vector
Options:
Description:The extra tags for the vectors this Kernel should fill
- matrix_tagssystemThe tag for the matrices this Kernel should fill
Default:system
C++ Type:MultiMooseEnum
Options:nontime system
Description:The tag for the matrices this Kernel should fill
- vector_tagsnontimeThe tag for the vectors this Kernel should fill
Default:nontime
C++ Type:MultiMooseEnum
Options:nontime time
Description:The tag for the vectors this Kernel should fill
Tagging Parameters
Input Files
- modules/contact/test/tests/bouncing-block-contact/grid-sequencing/grid-sequencing.i
- modules/phase_field/test/tests/phase_field_crystal/PFCTrad/pfct_newton_split1_asm1_10.i
- test/tests/materials/interface_material/interface_value_material_split_mesh.i
- modules/phase_field/test/tests/mobility_derivative/AC_mobility_derivative_coupled_test.i
- modules/contact/test/tests/bouncing-block-contact/tied-nodes.i
- modules/xfem/test/tests/moving_interface/verification/1D_rz_homog1mat.i
- modules/phase_field/test/tests/phase_field_crystal/PFCTrad/pfct_newton_split1_asm5.i
- modules/phase_field/test/tests/MultiSmoothCircleIC/latticesmoothcircleIC_normal_test.i
- modules/phase_field/test/tests/mobility_derivative/mobility_derivative_direct_coupled_test.i
- modules/contact/test/tests/bouncing-block-contact/frictional-nodal-min-normal-lm-mortar-fb-tangential-lm-mortar-disp.i
- test/tests/kernels/ad_mat_diffusion/1D_transient.i
- test/tests/materials/interface_material/interface_value_material_split_mesh_stateful.i
- modules/phase_field/test/tests/phase_field_crystal/PFCTrad/PFCTrad_test.i
- modules/xfem/test/tests/moving_interface/verification/2D_rz_homog1mat.i
- modules/phase_field/test/tests/SoretDiffusion/split_temp.i
- modules/contact/test/tests/bouncing-block-contact/frictional-nodal-min-lm-mortar-disp.i
- modules/contact/test/tests/bouncing-block-contact/frictionless-nodal-fb-lm-mortar-disp.i
- modules/phase_field/examples/multiphase/GrandPotential3Phase.i
- modules/phase_field/examples/anisotropic_interfaces/GrandPotentialTwophaseAnisotropy.i
- modules/xfem/test/tests/moving_interface/verification/1D_xy_lsdep1mat.i
- modules/xfem/test/tests/moving_interface/verification/1D_xy_discrete2mat.i
- modules/phase_field/test/tests/MultiSmoothCircleIC/multismoothcircleIC_test.i
- modules/contact/test/tests/bouncing-block-contact/frictionless-nodal-min-lm-nodal-disp.i
- test/tests/kernels/ad_mat_diffusion/2d_steady_state.i
- test/tests/kernels/simple_transient_diffusion/ill_conditioned_simple_diffusion.i
- modules/phase_field/test/tests/phase_field_crystal/PFCEnergyDensity/auxkernel.i
- modules/xfem/test/tests/moving_interface/verification/1D_rz_lsdep1mat.i
- modules/phase_field/test/tests/GrandPotentialPFM/GrandPotentialPFM.i
- modules/phase_field/test/tests/mobility_derivative/coupledmatdiffusion.i
- test/tests/auxkernels/mesh_integer/mesh_integer.i
- modules/phase_field/test/tests/GrandPotentialPFM/GrandPotentialAnisotropy.i
- modules/heat_conduction/test/tests/sideset_heat_transfer/gap_thermal_ktemp_1D.i
- modules/contact/test/tests/bouncing-block-contact/frictionless-mortar-min-lm-mortar-disp.i
- test/tests/interfacekernels/1d_interface/reaction_1D_steady.i
- modules/xfem/test/tests/moving_interface/moving_diffusion.i
- test/tests/interfacekernels/1d_interface/reaction_1D_transient.i
- modules/combined/test/tests/multiphase_mechanics/elasticenergymaterial.i
- modules/phase_field/test/tests/SplitCH/forward_split_math_test.i
- modules/phase_field/test/tests/mobility_derivative/mobility_derivative_split_coupled_test.i
- modules/contact/test/tests/bouncing-block-contact/frictionless-nodal-reduced-active-set.i
- modules/contact/test/tests/bouncing-block-contact/frictionless-mortar-fb-lm-mortar-disp.i
- modules/xfem/test/tests/moving_interface/phase_transition.i
- modules/phase_field/test/tests/GrandPotentialPFM/GrandPotentialMultiphase.i
- modules/xfem/test/tests/moving_interface/verification/2D_rz_lsdep1mat.i
- modules/contact/test/tests/bouncing-block-contact/frictional-mortar-fb-lm-mortar-disp.i
- modules/xfem/test/tests/moving_interface/verification/2D_xy_lsdep1mat.i
- modules/phase_field/test/tests/KKS_system/kks_multiphase.i
- modules/heat_conduction/test/tests/sideset_heat_transfer/gap_thermal_1D.i
- modules/contact/test/tests/bouncing-block-contact/frictionless-nodal-min-lm-mortar-disp.i
- modules/contact/test/tests/bouncing-block-contact/frictional-mortar-min-lm-mortar-disp.i
- modules/phase_field/examples/anisotropic_interfaces/GrandPotentialSolidification.i
- modules/phase_field/test/tests/MultiSmoothCircleIC/multismoothcircleIC_normal_test.i
- modules/contact/test/tests/bouncing-block-contact/frictionless-nodal-fb-lm-nodal-disp.i
- modules/xfem/test/tests/moving_interface/verification/2D_xy_homog1mat.i
- modules/phase_field/test/tests/initial_conditions/SmoothSuperellipsoidIC_3D.i
- modules/phase_field/test/tests/MultiSmoothCircleIC/specifiedsmoothcircleIC_test.i
- modules/phase_field/examples/anisotropic_interfaces/GrandPotentialPlanarGrowth.i
- modules/phase_field/test/tests/MultiSmoothCircleIC/latticesmoothcircleIC_test.i
- test/tests/materials/interface_material/interface_value_material_noIK.i
- modules/phase_field/test/tests/initial_conditions/SmoothCircleIC_3D.i
- test/tests/materials/interface_material/interface_value_material.i
- modules/contact/test/tests/bouncing-block-contact/bouncing-block-ranfs.i
- test/tests/kernels/2d_diffusion/matdiffusion.i
- modules/contact/test/tests/bouncing-block-contact/frictional-nodal-min-normal-lm-mortar-fb-tangential-lm-mortar-action.i
- modules/combined/test/tests/exception/nonad.i
- modules/xfem/test/tests/moving_interface/verification/1D_xy_homog1mat.i
- modules/heat_conduction/test/tests/sideset_heat_transfer/cfem_gap.i
- modules/phase_field/test/tests/mobility_derivative/matdiffusion.i
- modules/phase_field/test/tests/GrandPotentialPFM/GrandPotentialAnisotropyAntitrap.i
- modules/phase_field/test/tests/SoretDiffusion/direct_temp.i
modules/contact/test/tests/bouncing-block-contact/grid-sequencing/grid-sequencing.i
starting_point = 2e-1
# We offset slightly so we avoid the case where the bottom of the slave block and the top of the
# master block are perfectly vertically aligned which can cause the backtracking line search some
# issues for a coarsest mesh (basic line search handles that fine)
offset = 1e-2
[GlobalParams]
displacements = 'disp_x disp_y'
diffusivity = 1e0
[]
[Mesh]
file = level0.e
[]
[Variables]
[./disp_x]
block = '1 2'
[../]
[./disp_y]
block = '1 2'
[../]
[./normal_lm]
block = 3
[../]
[./tangential_lm]
block = 3
family = MONOMIAL
order = CONSTANT
[../]
[]
[ICs]
[./disp_y]
block = 2
variable = disp_y
value = ${fparse starting_point + offset}
type = ConstantIC
[../]
[]
[Kernels]
[./disp_x]
type = MatDiffusion
variable = disp_x
[../]
[./disp_y]
type = MatDiffusion
variable = disp_y
[../]
[]
[Constraints]
[normal_lm]
type = NormalNodalLMMechanicalContact
slave = 10
master = 20
variable = normal_lm
master_variable = disp_x
disp_y = disp_y
ncp_function_type = min
[../]
[normal_x]
type = NormalMortarMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = normal_lm
slave_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = false
[]
[normal_y]
type = NormalMortarMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = normal_lm
slave_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = false
[]
[tangential_lm]
type = TangentialMortarLMMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = tangential_lm
slave_variable = disp_x
slave_disp_y = disp_y
use_displaced_mesh = true
compute_primal_residuals = false
contact_pressure = normal_lm
friction_coefficient = .1
ncp_function_type = fb
[]
[tangential_x]
type = TangentialMortarMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = tangential_lm
slave_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = false
[]
[tangential_y]
type = TangentialMortarMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = tangential_lm
slave_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = false
[]
[]
[BCs]
[./botx]
type = DirichletBC
variable = disp_x
boundary = 40
value = 0.0
[../]
[./boty]
type = DirichletBC
variable = disp_y
boundary = 40
value = 0.0
[../]
[./topy]
type = FunctionDirichletBC
variable = disp_y
boundary = 30
function = '${starting_point} * cos(2 * pi / 40 * t) + ${offset}'
[../]
[./leftx]
type = FunctionDirichletBC
variable = disp_x
boundary = 50
function = '1e-2 * t'
[../]
[]
[Executioner]
type = Transient
end_time = 200
num_steps = 3
dt = 5
dtmin = .1
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason -snes_linesearch_monitor'
petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount -mat_mffd_err'
petsc_options_value = 'lu NONZERO 1e-15 1e-5'
l_max_its = 30
nl_max_its = 20
line_search = 'none'
nl_abs_tol = 1e-10
num_grids = 5
[]
[Debug]
show_var_residual_norms = true
[]
[Outputs]
[exo]
type = Exodus
sync_times = '15'
sync_only = true
[]
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Postprocessors]
[./num_nl]
type = NumNonlinearIterations
[../]
[./cumulative]
type = CumulativeValuePostprocessor
postprocessor = num_nl
[../]
[contact]
type = ContactDOFSetSize
variable = normal_lm
subdomain = '3'
execute_on = 'nonlinear timestep_end'
[]
[]
modules/phase_field/test/tests/phase_field_crystal/PFCTrad/pfct_newton_split1_asm1_10.i
[Mesh]
type = GeneratedMesh
dim = 2
nx = 50
ny = 50
xmax = 8
ymax = 8
[]
[Variables]
[./n]
[./InitialCondition]
type = RandomIC
min = -1
max = 4
[../]
[../]
[./u]
scaling = 1e2
[../]
[./v]
scaling = 1e1
[../]
[]
[Kernels]
[./ndot]
type = TimeDerivative
variable = n
[../]
[./n_bulk]
type = CHBulkPFCTrad
variable = n
[../]
[./u_term]
type = MatDiffusion
variable = n
v = u
diffusivity = C2
[../]
[./v_term]
type = MatDiffusion
variable = n
v = v
diffusivity = C4
[../]
[./u_rctn]
type = Reaction
variable = u
[../]
[./u_gradn]
type = LaplacianSplit
variable = u
c = n
[../]
[./v_rctn]
type = Reaction
variable = v
[../]
[./v_gradu]
type = LaplacianSplit
variable = v
c = u
[../]
[]
[BCs]
[./Periodic]
[./all]
auto_direction = 'x y'
[../]
[../]
[]
[Materials]
[./PFCTrad]
type = PFCTradMaterial
order = 4
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
solve_type = 'NEWTON'
l_max_its = 100
l_tol = 1e-04
nl_rel_tol = 1e-09
nl_abs_tol = 1e-11
splitting = 'nuv'
petsc_options = '-snes_view'
num_steps = 2
dt = 0.1
[]
[Splits]
[./nuv]
splitting = 'v nu'
splitting_type = schur
schur_type = full
schur_pre = Sp
#petsc_options = '-dm_view'
[../]
[./nu]
vars = 'n u'
petsc_options = '-ksp_monitor'
petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_asm_nblocks -pc_asm_overlap -sub_pc_type'
petsc_options_value = ' 101 asm 10 1 lu'
[../]
[./v]
vars = 'v'
#petsc_options = '-ksp_monitor'
petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
petsc_options_value = 'asm 101 preonly lu 0'
#full = true
[../]
[]
[Outputs]
exodus = true
[]
test/tests/materials/interface_material/interface_value_material_split_mesh.i
[Mesh]
[gen]
type = GeneratedMeshGenerator
dim = 2
nx = 2
xmax = 2
ny = 2
ymax = 2
elem_type = QUAD4
[]
[./subdomain_id]
input = gen
type = SubdomainBoundingBoxGenerator
bottom_left = '1 0 0'
top_right = '2 2 0'
block_id = 1
[../]
[./split]
type = BreakMeshByBlockGenerator
input = subdomain_id
[../]
[]
[Variables]
[./u]
block = 0
[../]
[./v]
block = 1
[../]
[]
[Kernels]
[./diff]
type = MatDiffusion
variable = u
diffusivity = 'diffusivity'
block = 0
[../]
[./diff_v]
type = MatDiffusion
variable = v
diffusivity = 'diffusivity'
block = 1
[../]
[]
[InterfaceKernels]
[tied]
type = PenaltyInterfaceDiffusion
variable = u
neighbor_var = v
jump_prop_name = "average_jump"
penalty = 1e6
boundary = 'interface'
[]
[]
[BCs]
[u_left]
type = DirichletBC
boundary = 'left'
variable = u
value = 1
[]
[v_right]
type = DirichletBC
boundary = 'right'
variable = v
value = 0
[]
[]
[Materials]
[./stateful1]
type = StatefulMaterial
block = 0
initial_diffusivity = 1
# outputs = all
[../]
[./stateful2]
type = StatefulMaterial
block = 1
initial_diffusivity = 2
# outputs = all
[../]
[./interface_material_avg]
type = InterfaceValueMaterial
mat_prop_master = diffusivity
mat_prop_slave = diffusivity
var_master = diffusivity_var
var_slave = diffusivity_var
mat_prop_out_basename = diff
boundary = interface
interface_value_type = average
mat_prop_var_out_basename = diff_var
nl_var_master = u
nl_var_slave = v
[../]
[./interface_material_jump_master_minus_slave]
type = InterfaceValueMaterial
mat_prop_master = diffusivity
mat_prop_slave = diffusivity
var_master = diffusivity_var
var_slave = diffusivity_var
mat_prop_out_basename = diff
boundary = interface
interface_value_type = jump_master_minus_slave
mat_prop_var_out_basename = diff_var
nl_var_master = u
nl_var_slave = v
[../]
[./interface_material_jump_slave_minus_master]
type = InterfaceValueMaterial
mat_prop_master = diffusivity
mat_prop_slave = diffusivity
var_master = diffusivity_var
var_slave = diffusivity_var
mat_prop_out_basename = diff
boundary = interface
interface_value_type = jump_slave_minus_master
mat_prop_var_out_basename = diff_var
nl_var_master = u
nl_var_slave = v
[../]
[./interface_material_jump_abs]
type = InterfaceValueMaterial
mat_prop_master = diffusivity
mat_prop_slave = diffusivity
var_master = diffusivity_var
var_slave = diffusivity_var
mat_prop_out_basename = diff
boundary = interface
interface_value_type = jump_abs
mat_prop_var_out_basename = diff_var
nl_var_master = u
nl_var_slave = v
[../]
[./interface_material_master]
type = InterfaceValueMaterial
mat_prop_master = diffusivity
mat_prop_slave = diffusivity
var_master = diffusivity_var
var_slave = diffusivity_var
mat_prop_out_basename = diff
boundary = interface
interface_value_type = master
mat_prop_var_out_basename = diff_var
nl_var_master = u
nl_var_slave = v
[../]
[./interface_material_slave]
type = InterfaceValueMaterial
mat_prop_master = diffusivity
mat_prop_slave = diffusivity
var_master = diffusivity_var
var_slave = diffusivity_var
mat_prop_out_basename = diff
mat_prop_var_out_basename = diff_var
boundary = interface
interface_value_type = slave
nl_var_master = u
nl_var_slave = v
[../]
[]
[AuxKernels]
[./interface_material_avg]
type = MaterialRealAux
property = diff_average
variable = diffusivity_average
boundary = interface
[]
[./interface_material_jump_master_minus_slave]
type = MaterialRealAux
property = diff_jump_master_minus_slave
variable = diffusivity_jump_master_minus_slave
boundary = interface
[]
[./interface_material_jump_slave_minus_master]
type = MaterialRealAux
property = diff_jump_slave_minus_master
variable = diffusivity_jump_slave_minus_master
boundary = interface
[]
[./interface_material_jump_abs]
type = MaterialRealAux
property = diff_jump_abs
variable = diffusivity_jump_abs
boundary = interface
[]
[./interface_material_master]
type = MaterialRealAux
property = diff_master
variable = diffusivity_master
boundary = interface
[]
[./interface_material_slave]
type = MaterialRealAux
property = diff_slave
variable = diffusivity_slave
boundary = interface
[]
[diffusivity_var]
type = MaterialRealAux
property = diffusivity
variable = diffusivity_var
[]
[]
[AuxVariables]
[diffusivity_var]
family = MONOMIAL
order = CONSTANT
[]
[./diffusivity_average]
family = MONOMIAL
order = CONSTANT
[]
[./diffusivity_jump_master_minus_slave]
family = MONOMIAL
order = CONSTANT
[]
[./diffusivity_jump_slave_minus_master]
family = MONOMIAL
order = CONSTANT
[]
[./diffusivity_jump_abs]
family = MONOMIAL
order = CONSTANT
[]
[./diffusivity_master]
family = MONOMIAL
order = CONSTANT
[]
[./diffusivity_slave]
family = MONOMIAL
order = CONSTANT
[]
[]
[Executioner]
type = Steady
solve_type = NEWTON
[]
[Outputs]
exodus = true
[]
modules/phase_field/test/tests/mobility_derivative/AC_mobility_derivative_coupled_test.i
[Mesh]
type = GeneratedMesh
dim = 2
nx = 20
ny = 10
xmax = 50
ymin = 25
ymax = 50
[]
[Variables]
[./op]
[../]
[./v]
[../]
[]
[ICs]
[./op_IC]
type = SmoothCircleIC
x1 = 25.0
y1 = 25.0
radius = 15.0
invalue = 0.9
outvalue = 0.1
int_width = 3.0
variable = op
[../]
[./v_IC]
type = BoundingBoxIC
x1 = 0.0
x2 = 25.0
y1 = 0.0
y2 = 50.0
inside = 1.0
outside = 0.0
variable = v
[../]
[]
[Kernels]
[./op_dot]
type = TimeDerivative
variable = op
[../]
[./op_bulk]
type = AllenCahn
variable = op
f_name = F
mob_name = L
args = v
[../]
[./op_interface]
type = ACInterface
variable = op
kappa_name = 1
mob_name = L
args = v
[../]
[./v_dot]
type = TimeDerivative
variable = v
[../]
[./v_diff]
type = MatDiffusion
variable = v
diffusivity = 50.0
[../]
[]
[Materials]
[./consts]
type = DerivativeParsedMaterial
f_name = L
function = 'l:=0.1+1*(v+op)^2; if(l<0.01, 0.01, l)'
args = 'op v'
outputs = exodus
output_properties = 'L dL/dop dL/dv'
derivative_order = 2
[../]
[./free_energy]
type = DerivativeParsedMaterial
f_name = F
args = 'op'
function = '2*op^2*(1-op)^2 - 0.2*op'
derivative_order = 2
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
scheme = 'bdf2'
solve_type = 'NEWTON'
petsc_options_iname = '-pc_type'
petsc_options_value = 'lu'
l_max_its = 15
l_tol = 1.0e-4
nl_max_its = 15
nl_rel_tol = 1.0e-9
start_time = 0.0
num_steps = 10
dt = 0.2
[]
[Outputs]
interval = 5
print_linear_residuals = false
exodus = true
[]
modules/contact/test/tests/bouncing-block-contact/tied-nodes.i
[GlobalParams]
displacements = 'disp_x disp_y'
diffusivity = 1e0
[]
[Mesh]
file = long-bottom-block-symmetric-single-element.e
[]
[Variables]
[./disp_x]
scaling = 2
[../]
[./disp_y]
scaling = 3
[../]
[]
[Kernels]
[./disp_x]
type = MatDiffusion
variable = disp_x
[../]
[./disp_y]
type = MatDiffusion
variable = disp_y
[../]
[]
[Constraints]
[./disp_x]
type = RANFSTieNode
slave = 10
master = 20
variable = disp_x
master_variable = disp_x
component = x
[../]
[./disp_y]
type = RANFSTieNode
slave = 10
master = 20
variable = disp_y
master_variable = disp_y
component = y
[../]
[]
[BCs]
[./botx]
type = DirichletBC
variable = disp_x
boundary = 40
value = 0.0
[../]
[./boty]
type = DirichletBC
variable = disp_y
boundary = 40
value = 0.0
[../]
[./topy]
type = DirichletBC
variable = disp_y
boundary = 30
value = 0
[../]
[./topx]
type = DirichletBC
variable = disp_x
boundary = 30
value = 0
[../]
[]
[Executioner]
type = Transient
num_steps = 1
dtmin = 1
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
l_max_its = 30
nl_max_its = 20
line_search = 'none'
[]
[Debug]
show_var_residual_norms = true
[]
[Outputs]
[exo]
type = Exodus
[]
checkpoint = true
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Postprocessors]
[./num_nl]
type = NumNonlinearIterations
[../]
[./cumulative]
type = CumulativeValuePostprocessor
postprocessor = num_nl
[../]
[]
modules/xfem/test/tests/moving_interface/verification/1D_rz_homog1mat.i
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #
# XFEM Moving Interface Verification Problem
# Dimensionality: quasi-1D
# Coordinate System: rz
# Material Numbers/Types: homogeneous 1 material, 2 region
# Element Order: 1st
# Interface Characteristics: u independent, prescribed level set function
# Description:
# A simple transient heat transfer problem in cylindrical coordinates designed
# with the Method of Manufactured Solutions. This problem was developed to
# verify XFEM performance in the presence of a moving interface for linear
# element models that can be exactly evaluated by FEM/Moose. Both the
# temperature solution and level set function are designed to be linear to
# attempt to minimize error between the Moose/exact solution and XFEM results.
# Thermal conductivity is a single, constant value at all points in the system.
# Results:
# The temperature at the left boundary (x=1) exhibits the largest difference
# between the FEM/Moose solution and XFEM results. We present the XFEM results
# at this location with 10 digits of precision:
# Time Expected Temperature XFEM Calculated Temperature
# 0.2 440 440
# 0.4 480 480.0008118
# 0.6 520 520.0038529
# 0.8 560 560.0089177
# 1.0 600 600.0133344
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #
[GlobalParams]
order = FIRST
family = LAGRANGE
[]
[Problem]
coord_type = RZ
[]
[Mesh]
type = GeneratedMesh
dim = 2
nx = 4
ny = 1
xmin = 1.0
xmax = 2.0
ymin = 0.0
ymax = 0.5
elem_type = QUAD4
[]
[XFEM]
qrule = moment_fitting
output_cut_plane = true
[]
[UserObjects]
[./level_set_cut_uo]
type = LevelSetCutUserObject
level_set_var = ls
heal_always = true
[../]
[]
[Variables]
[./u]
[../]
[]
[AuxVariables]
[./ls]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./heat_cond]
type = MatDiffusion
variable = u
diffusivity = diffusion_coefficient
[../]
[./vol_heat_src]
type = BodyForce
variable = u
function = src_func
[../]
[./mat_time_deriv]
type = TestMatTimeDerivative
variable = u
mat_prop_value = rhoCp
[../]
[]
[AuxKernels]
[./ls_function]
type = FunctionAux
variable = ls
function = ls_func
[../]
[]
[Constraints]
[./xfem_constraint]
type = XFEMSingleVariableConstraint
variable = u
geometric_cut_userobject = 'level_set_cut_uo'
use_penalty = true
alpha = 1e5
[../]
[]
[Functions]
[./src_func]
type = ParsedFunction
value = '10*(-200*x+400) + 200*1.5*t/x'
[../]
[./neumann_func]
type = ParsedFunction
value = '1.5*200*t'
[../]
[./ls_func]
type = ParsedFunction
value = '2.04 - x - 0.2*t'
[../]
[]
[Materials]
[./mat_time_deriv_prop]
type = GenericConstantMaterial
prop_names = 'rhoCp'
prop_values = 10
[../]
[./therm_cond_prop]
type = GenericConstantMaterial
prop_names = 'diffusion_coefficient'
prop_values = 1.5
[../]
[]
[BCs]
[./left_u]
type = FunctionNeumannBC
variable = u
boundary = 'left'
function = neumann_func
[../]
[./right_u]
type = DirichletBC
variable = u
boundary = 'right'
value = 400
[../]
[]
[ICs]
[./u_ic]
type = ConstantIC
value = 400
variable = u
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
line_search = 'none'
l_tol = 1.0e-6
nl_max_its = 15
nl_rel_tol = 1.0e-10
nl_abs_tol = 1.0e-9
start_time = 0.0
dt = 0.2
end_time = 1.0
max_xfem_update = 1
[]
[Outputs]
interval = 1
execute_on = 'initial timestep_end'
exodus = true
[./console]
type = Console
output_linear = true
[../]
[]
modules/phase_field/test/tests/phase_field_crystal/PFCTrad/pfct_newton_split1_asm5.i
[Mesh]
type = GeneratedMesh
dim = 2
nx = 50
ny = 50
xmax = 8
ymax = 8
[]
[Variables]
[./n]
[./InitialCondition]
type = RandomIC
min = -1
max = 4
[../]
[../]
[./u]
scaling = 1e2
[../]
[./v]
scaling = 1e1
[../]
[]
[Kernels]
[./ndot]
type = TimeDerivative
variable = n
[../]
[./n_bulk]
type = CHBulkPFCTrad
variable = n
[../]
[./u_term]
type = MatDiffusion
variable = n
v = u
diffusivity = C2
[../]
[./v_term]
type = MatDiffusion
variable = n
v = v
diffusivity = C4
[../]
[./u_rctn]
type = Reaction
variable = u
[../]
[./u_gradn]
type = LaplacianSplit
variable = u
c = n
[../]
[./v_rctn]
type = Reaction
variable = v
[../]
[./v_gradu]
type = LaplacianSplit
variable = v
c = u
[../]
[]
[BCs]
[./Periodic]
[./all]
auto_direction = 'x y'
[../]
[../]
[]
[Materials]
[./PFCTrad]
type = PFCTradMaterial
order = 4
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
solve_type = 'NEWTON'
l_max_its = 100
l_tol = 1e-04
nl_rel_tol = 1e-09
nl_abs_tol = 1e-11
splitting = 'nuv'
petsc_options = '-snes_view'
num_steps = 2
dt = 0.1
[]
[Splits]
[./nuv]
splitting = 'v nu'
splitting_type = schur
schur_type = full
schur_pre = Sp
#petsc_options = '-dm_view'
[../]
[./nu]
vars = 'n u'
petsc_options = '-ksp_monitor'
petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_asm_overlap -sub_pc_type'
petsc_options_value = ' 101 asm 5 lu'
[../]
[./v]
vars = 'v'
#petsc_options = '-ksp_monitor'
petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
petsc_options_value = 'asm 101 preonly lu 0'
#full = true
[../]
[]
[Outputs]
execute_on = 'initial timestep_end linear'
exodus = true
[]
modules/phase_field/test/tests/MultiSmoothCircleIC/latticesmoothcircleIC_normal_test.i
[Mesh]
type = GeneratedMesh
dim = 3
nx = 22
ny = 22
nz = 22
xmin = 0
xmax = 100
ymin = 0
ymax = 100
zmin = 0
zmax = 100
elem_type = HEX8
[]
[Variables]
[./c]
order = FIRST
family = LAGRANGE
[../]
[]
[ICs]
[./c]
type = LatticeSmoothCircleIC
variable = c
invalue = 1.0
outvalue = 0.0001
circles_per_side = '3 3 3'
pos_variation = 10.0
radius = 10.0
int_width = 12.0
radius_variation = 2
radius_variation_type = normal
[../]
[]
[Kernels]
active = 'ie_c diff'
[./ie_c]
type = TimeDerivative
variable = c
[../]
[./diff]
type = MatDiffusion
variable = c
diffusivity = D_v
[../]
[]
[BCs]
[]
[Materials]
active = 'Dv'
[./Dv]
type = GenericConstantMaterial
prop_names = D_v
prop_values = 0.074802
[../]
[]
[Postprocessors]
active = 'bubbles'
[./bubbles]
type = FeatureFloodCount
variable = c
execute_on = 'initial timestep_end'
flood_entity_type = NODAL
[../]
[]
[Executioner]
type = Transient
scheme = 'bdf2'
#Preconditioned JFNK (default)
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart -mat_mffd_type'
petsc_options_value = 'hypre boomeramg 101 ds'
l_max_its = 20
l_tol = 1e-4
nl_max_its = 20
nl_rel_tol = 1e-9
nl_abs_tol = 1e-11
start_time = 0.0
num_steps =1
dt = 100.0
[]
[Outputs]
exodus = true
[]
modules/phase_field/test/tests/mobility_derivative/mobility_derivative_direct_coupled_test.i
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
xmax = 30
ymax = 30
elem_type = QUAD4
[]
[Variables]
[./c]
family = HERMITE
order = THIRD
[../]
[./d]
[../]
[]
[ICs]
[./c_IC]
type = SmoothCircleIC
x1 = 15
y1 = 15
radius = 12
variable = c
int_width = 3
invalue = 1
outvalue = 0
[../]
[./d_IC]
type = BoundingBoxIC
x1 = 0
x2 = 15
y1 = 0
y2 = 30
inside = 1.0
outside = 0.0
variable = d
[../]
[]
[Kernels]
[./c_bulk]
type = CahnHilliard
variable = c
mob_name = M
f_name = F
args = d
[../]
[./c_int]
type = CHInterface
variable = c
kappa_name = kappa_c
mob_name = M
args = d
[../]
[./c_dot]
type = TimeDerivative
variable = c
[../]
[./d_dot]
type = TimeDerivative
variable = d
[../]
[./d_diff]
type = MatDiffusion
variable = d
diffusivity = diffusivity
[../]
[]
[Materials]
[./kappa]
type = GenericConstantMaterial
prop_names = kappa_c
prop_values = 2.0
[../]
[./mob]
type = DerivativeParsedMaterial
f_name = M
args = 'c d'
function = if(d>0.001,d,0.001)*if(c<0,0.5,if(c>1,0.5,1-0.5*c^2))
derivative_order = 2
[../]
[./free_energy]
type = MathEBFreeEnergy
f_name = F
c = c
[../]
[./d_diff]
type = GenericConstantMaterial
prop_names = diffusivity
prop_values = 1.0
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
scheme = BDF2
solve_type = NEWTON
petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_pc_type -pc_asm_overlap'
petsc_options_value = 'asm 31 lu 1'
l_max_its = 30
l_tol = 1.0e-4
nl_max_its = 50
nl_rel_tol = 1.0e-10
dt = 0.25
num_steps = 2
[]
[Outputs]
execute_on = 'timestep_end'
[./oversample]
refinements = 2
type = Exodus
[../]
[]
modules/contact/test/tests/bouncing-block-contact/frictional-nodal-min-normal-lm-mortar-fb-tangential-lm-mortar-disp.i
starting_point = 2e-1
# We offset slightly so we avoid the case where the bottom of the slave block and the top of the
# master block are perfectly vertically aligned which can cause the backtracking line search some
# issues for a coarse mesh (basic line search handles that fine)
offset = 1e-2
[GlobalParams]
displacements = 'disp_x disp_y'
diffusivity = 1e0
scaling = 1e0
[]
[Mesh]
[./file_mesh]
type = FileMeshGenerator
file = long-bottom-block-1elem-blocks-coarse.e
[../]
[]
[Variables]
[./disp_x]
block = '1 2'
# order = SECOND
[../]
[./disp_y]
block = '1 2'
# order = SECOND
[../]
[./frictional_normal_lm]
block = 3
# family = MONOMIAL
# order = CONSTANT
[../]
[./frictional_tangential_lm]
block = 3
family = MONOMIAL
order = CONSTANT
[../]
[]
[ICs]
[./disp_y]
block = 2
variable = disp_y
value = ${fparse starting_point + offset}
type = ConstantIC
[../]
[]
[Kernels]
[./disp_x]
type = MatDiffusion
variable = disp_x
[../]
[./disp_y]
type = MatDiffusion
variable = disp_y
[../]
[]
[Constraints]
[frictional_normal_lm]
type = NormalNodalLMMechanicalContact
slave = 10
master = 20
variable = frictional_normal_lm
master_variable = disp_x
disp_y = disp_y
ncp_function_type = min
[../]
[normal_x]
type = NormalMortarMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = frictional_normal_lm
slave_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = false
[]
[normal_y]
type = NormalMortarMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = frictional_normal_lm
slave_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = false
[]
[frictional_tangential_lm]
type = TangentialMortarLMMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = frictional_tangential_lm
slave_variable = disp_x
slave_disp_y = disp_y
use_displaced_mesh = true
compute_primal_residuals = false
contact_pressure = frictional_normal_lm
friction_coefficient = .1
ncp_function_type = fb
[]
[tangential_x]
type = TangentialMortarMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = frictional_tangential_lm
slave_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = false
[]
[tangential_y]
type = TangentialMortarMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = frictional_tangential_lm
slave_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = false
[]
[]
[BCs]
[./botx]
type = DirichletBC
variable = disp_x
boundary = 40
value = 0.0
[../]
[./boty]
type = DirichletBC
variable = disp_y
boundary = 40
value = 0.0
[../]
[./topy]
type = FunctionDirichletBC
variable = disp_y
boundary = 30
function = '${starting_point} * cos(2 * pi / 40 * t) + ${offset}'
[../]
[./leftx]
type = FunctionDirichletBC
variable = disp_x
boundary = 50
function = '1e-2 * t'
[../]
[]
[Executioner]
type = Transient
end_time = 200
dt = 5
dtmin = .1
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason -pc_svd_monitor -snes_linesearch_monitor -snes_ksp_ew'
petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount -mat_mffd_err'
petsc_options_value = 'lu NONZERO 1e-15 1e-5'
l_max_its = 30
nl_max_its = 20
line_search = 'none'
# [./Predictor]
# type = SimplePredictor
# scale = 1.0
# [../]
[]
[Debug]
show_var_residual_norms = true
[]
[Outputs]
exodus = true
# checkpoint = true
# [./dofmap]
# type = DOFMap
# execute_on = 'initial'
# [../]
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Postprocessors]
[./num_nl]
type = NumNonlinearIterations
[../]
[./cumulative]
type = CumulativeValuePostprocessor
postprocessor = num_nl
[../]
[contact]
type = ContactDOFSetSize
variable = frictional_normal_lm
subdomain = '3'
execute_on = 'nonlinear timestep_end'
[]
[]
test/tests/kernels/ad_mat_diffusion/1D_transient.i
# This test solves a 1D transient heat equation
# The error is calculated by comparing to the analytical solution
# The problem setup and analytical solution are taken from "Advanced Engineering
# Mathematics, 10th edition" by Erwin Kreyszig.
# http://www.amazon.com/Advanced-Engineering-Mathematics-Erwin-Kreyszig/dp/0470458364
# It is Example 1 in section 12.6 on page 561
[Mesh]
type = GeneratedMesh
dim = 1
nx = 160
xmax = 80
[]
[Variables]
[./T]
[../]
[]
[ICs]
[./T_IC]
type = FunctionIC
variable = T
function = '100*sin(pi*x/80)'
[../]
[]
[Kernels]
[./diff]
type = MatDiffusion
variable = T
diffusivity = 0.95
[../]
[./dt]
type = CoefTimeDerivative
variable = T
Coefficient = 0.82064
[../]
[]
[BCs]
[./sides]
type = DirichletBC
variable = T
boundary = 'left right'
value = 0
[../]
[]
[Executioner]
type = Transient
dt = 1e-2
end_time = 1
[]
[Postprocessors]
[./error]
type = NodalL2Error
function = '100*sin(pi*x/80)*exp(-0.95/(0.092*8.92)*pi^2/80^2*t)'
variable = T
outputs = console
[../]
[]
[Outputs]
exodus = true
[]
test/tests/materials/interface_material/interface_value_material_split_mesh_stateful.i
[Mesh]
[gen]
type = GeneratedMeshGenerator
dim = 2
nx = 2
xmax = 2
ny = 2
ymax = 2
elem_type = QUAD4
[]
[./subdomain_id]
input = gen
type = SubdomainBoundingBoxGenerator
bottom_left = '1 0 0'
top_right = '2 2 0'
block_id = 1
[../]
[./split]
type = BreakMeshByBlockGenerator
input = subdomain_id
[../]
[]
[Variables]
[./u]
block = 0
[../]
[./v]
block = 1
[../]
[]
[Kernels]
[./diff]
type = MatDiffusion
variable = u
diffusivity = 'diffusivity'
block = 0
[../]
[./diff_v]
type = MatDiffusion
variable = v
diffusivity = 'diffusivity'
block = 1
[../]
[]
[InterfaceKernels]
[tied]
type = PenaltyInterfaceDiffusion
variable = u
neighbor_var = v
penalty = 1e6
jump_prop_name = "average_jump"
boundary = 'interface'
[]
[]
[BCs]
[u_left]
type = DirichletBC
boundary = 'left'
variable = u
value = 1
[]
[v_right]
type = DirichletBC
boundary = 'right'
variable = v
value = 0
[]
[]
[Materials]
[./stateful1]
type = StatefulMaterial
block = 0
initial_diffusivity = 1
# outputs = all
[../]
[./stateful2]
type = StatefulMaterial
block = 1
initial_diffusivity = 2
# outputs = all
[../]
[./interface_material_avg]
type = InterfaceValueMaterial
mat_prop_master = diffusivity
mat_prop_slave = diffusivity
var_master = diffusivity_var
var_slave = diffusivity_var
mat_prop_out_basename = diff
boundary = interface
interface_value_type = average
mat_prop_var_out_basename = diff_var
nl_var_master = u
nl_var_slave = v
couple_old_values_and_properties = true
[../]
[./interface_material_jump_master_minus_slave]
type = InterfaceValueMaterial
mat_prop_master = diffusivity
mat_prop_slave = diffusivity
var_master = diffusivity_var
var_slave = diffusivity_var
mat_prop_out_basename = diff
boundary = interface
interface_value_type = jump_master_minus_slave
mat_prop_var_out_basename = diff_var
nl_var_master = u
nl_var_slave = v
couple_old_values_and_properties = true
[../]
[./interface_material_jump_slave_minus_master]
type = InterfaceValueMaterial
mat_prop_master = diffusivity
mat_prop_slave = diffusivity
var_master = diffusivity_var
var_slave = diffusivity_var
mat_prop_out_basename = diff
boundary = interface
interface_value_type = jump_slave_minus_master
mat_prop_var_out_basename = diff_var
nl_var_master = u
nl_var_slave = v
couple_old_values_and_properties = true
[../]
[./interface_material_jump_abs]
type = InterfaceValueMaterial
mat_prop_master = diffusivity
mat_prop_slave = diffusivity
var_master = diffusivity_var
var_slave = diffusivity_var
mat_prop_out_basename = diff
boundary = interface
interface_value_type = jump_abs
mat_prop_var_out_basename = diff_var
nl_var_master = u
nl_var_slave = v
couple_old_values_and_properties = true
[../]
[./interface_material_master]
type = InterfaceValueMaterial
mat_prop_master = diffusivity
mat_prop_slave = diffusivity
var_master = diffusivity_var
var_slave = diffusivity_var
mat_prop_out_basename = diff
boundary = interface
interface_value_type = master
mat_prop_var_out_basename = diff_var
nl_var_master = u
nl_var_slave = v
couple_old_values_and_properties = true
[../]
[./interface_material_slave]
type = InterfaceValueMaterial
mat_prop_master = diffusivity
mat_prop_slave = diffusivity
var_master = diffusivity_var
var_slave = diffusivity_var
mat_prop_out_basename = diff
mat_prop_var_out_basename = diff_var
boundary = interface
interface_value_type = slave
nl_var_master = u
nl_var_slave = v
couple_old_values_and_properties = true
[../]
[]
[AuxKernels]
[./interface_material_avg]
type = MaterialRealAux
property = diff_average
variable = diffusivity_average
boundary = interface
[]
[./interface_material_jump_master_minus_slave]
type = MaterialRealAux
property = diff_jump_master_minus_slave
variable = diffusivity_jump_master_minus_slave
boundary = interface
[]
[./interface_material_jump_slave_minus_master]
type = MaterialRealAux
property = diff_jump_slave_minus_master
variable = diffusivity_jump_slave_minus_master
boundary = interface
[]
[./interface_material_jump_abs]
type = MaterialRealAux
property = diff_jump_abs
variable = diffusivity_jump_abs
boundary = interface
[]
[./interface_material_master]
type = MaterialRealAux
property = diff_master
variable = diffusivity_master
boundary = interface
[]
[./interface_material_slave]
type = MaterialRealAux
property = diff_slave
variable = diffusivity_slave
boundary = interface
[]
[./interface_material_avg_prev]
type = MaterialRealAux
property = diff_average_prev
variable = diffusivity_average_prev
boundary = interface
[]
[./interface_material_jump_master_minus_slave_prev]
type = MaterialRealAux
property = diff_jump_master_minus_slave_prev
variable = diffusivity_jump_master_minus_slave_prev
boundary = interface
[]
[./interface_material_jump_slave_minus_master_prev]
type = MaterialRealAux
property = diff_jump_slave_minus_master_prev
variable = diffusivity_jump_slave_minus_master_prev
boundary = interface
[]
[./interface_material_jump_abs_prev]
type = MaterialRealAux
property = diff_jump_abs_prev
variable = diffusivity_jump_abs_prev
boundary = interface
[]
[./interface_material_master_prev]
type = MaterialRealAux
property = diff_master_prev
variable = diffusivity_master_prev
boundary = interface
[]
[./interface_material_slave_prev]
type = MaterialRealAux
property = diff_slave_prev
variable = diffusivity_slave_prev
boundary = interface
[]
[diffusivity_var]
type = MaterialRealAux
property = diffusivity
variable = diffusivity_var
[]
[]
[AuxVariables]
[diffusivity_var]
family = MONOMIAL
order = CONSTANT
[]
[./diffusivity_average]
family = MONOMIAL
order = CONSTANT
[]
[./diffusivity_jump_master_minus_slave]
family = MONOMIAL
order = CONSTANT
[]
[./diffusivity_jump_slave_minus_master]
family = MONOMIAL
order = CONSTANT
[]
[./diffusivity_jump_abs]
family = MONOMIAL
order = CONSTANT
[]
[./diffusivity_master]
family = MONOMIAL
order = CONSTANT
[]
[./diffusivity_slave]
family = MONOMIAL
order = CONSTANT
[]
[./diffusivity_average_prev]
family = MONOMIAL
order = CONSTANT
[]
[./diffusivity_jump_master_minus_slave_prev]
family = MONOMIAL
order = CONSTANT
[]
[./diffusivity_jump_slave_minus_master_prev]
family = MONOMIAL
order = CONSTANT
[]
[./diffusivity_jump_abs_prev]
family = MONOMIAL
order = CONSTANT
[]
[./diffusivity_master_prev]
family = MONOMIAL
order = CONSTANT
[]
[./diffusivity_slave_prev]
family = MONOMIAL
order = CONSTANT
[]
[]
[Executioner]
type = Transient
solve_type = NEWTON
num_steps = 3
dt = 0.5
[]
[Outputs]
exodus = true
[]
modules/phase_field/test/tests/phase_field_crystal/PFCTrad/PFCTrad_test.i
[Mesh]
type = GeneratedMesh
dim = 2
nx = 50
ny = 50
xmax = 8
ymax = 8
[]
[Variables]
[./n]
[./InitialCondition]
type = RandomIC
min = -1
max = 4
[../]
[../]
[./u]
scaling = 1e2
[../]
[./v]
scaling = 1e1
[../]
[]
[Kernels]
[./ndot]
type = TimeDerivative
variable = n
[../]
[./n_bulk]
type = CHBulkPFCTrad
variable = n
[../]
[./u_term]
type = MatDiffusion
variable = n
v = u
diffusivity = C2
[../]
[./v_term]
type = MatDiffusion
variable = n
v = v
diffusivity = C4
[../]
[./u_rctn]
type = Reaction
variable = u
[../]
[./u_gradn]
type = LaplacianSplit
variable = u
c = n
[../]
[./v_rctn]
type = Reaction
variable = v
[../]
[./v_gradu]
type = LaplacianSplit
variable = v
c = u
[../]
[]
[BCs]
[./Periodic]
[./all]
auto_direction = 'x y'
[../]
[../]
[]
[Materials]
[./PFCTrad]
type = PFCTradMaterial
order = FOURTH
[../]
[]
[Preconditioning]
active = 'SMP'
[./SMP]
type = SMP
full = true
off_diag_row = 'u n n v'
off_diag_column = 'n u v u'
[../]
[./FDP]
type = FDP
full = true
[../]
[]
[Executioner]
type = Transient
solve_type = NEWTON
# petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
# petsc_options_value = 'hypre boomeramg 101'
# petsc_options_iname = -pc_type
# petsc_options_value = lu
petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
petsc_options_value = 'asm 101 preonly lu 5'
l_max_its = 100
l_tol = 1e-04
nl_rel_tol = 1e-09
nl_abs_tol = 1e-11
num_steps = 2
dt = 0.1
[]
[Outputs]
exodus = true
[]
modules/xfem/test/tests/moving_interface/verification/2D_rz_homog1mat.i
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #
# XFEM Moving Interface Verification Problem
# Dimensionality: 2D
# Coordinate System: rz
# Material Numbers/Types: homogeneous 1 material, 2 region
# Element Order: 1st
# Interface Characteristics: u independent, prescribed level set function
# Description:
# Transient 2D heat transfer problem in cylindrical coordinates designed with
# the Method of Manufactured Solutions. This problem was developed to verify
# XFEM performance on linear elements in the presence of a moving interface
# sweeping across the x-y coordinates of a system with homogeneous material
# properties. This problem can be exactly evaluated by FEM/Moose without the
# moving interface. Both the temperature and level set function are designed
# to be linear to attempt to minimize error between the Moose/exact solution
# and XFEM results.
# Results:
# The temperature at the bottom left boundary (x=1, y=1) exhibits the largest
# difference between the FEM/Moose solution and XFEM results. We present the
# XFEM results at this location with 10 digits of precision:
# Time Expected Temperature XFEM Calculated Temperature
# 0.2 440 440
# 0.4 480 479.9998745
# 0.6 520 519.9995067
# 0.8 560 559.9989409
# 1.0 600 599.9987054
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #
[GlobalParams]
order = FIRST
family = LAGRANGE
[]
[Problem]
coord_type = RZ
[]
[Mesh]
type = GeneratedMesh
dim = 2
nx = 4
ny = 4
xmin = 1.0
xmax = 2.0
ymin = 1.0
ymax = 2.0
elem_type = QUAD4
[]
[XFEM]
qrule = moment_fitting
output_cut_plane = true
[]
[UserObjects]
[./level_set_cut_uo]
type = LevelSetCutUserObject
level_set_var = ls
heal_always = true
[../]
[]
[Variables]
[./u]
[../]
[]
[AuxVariables]
[./ls]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./heat_cond]
type = MatDiffusion
variable = u
diffusivity = diffusion_coefficient
[../]
[./vol_heat_src]
type = BodyForce
variable = u
function = src_func
[../]
[./mat_time_deriv]
type = TestMatTimeDerivative
variable = u
mat_prop_value = rhoCp
[../]
[]
[AuxKernels]
[./ls_function]
type = FunctionAux
variable = ls
function = ls_func
[../]
[]
[Constraints]
[./xfem_constraints]
type = XFEMSingleVariableConstraint
variable = u
geometric_cut_userobject = 'level_set_cut_uo'
use_penalty = true
alpha = 1e5
[../]
[]
[Functions]
[./src_func]
type = ParsedFunction
value = '10*(-100*x-100*y+400) + 100*1.5*t/x'
[../]
[./neumann_func]
type = ParsedFunction
value = '1.5*100*t'
[../]
[./dirichlet_right_func]
type = ParsedFunction
value = '(-100*y+200)*t+400'
[../]
[./dirichlet_top_func]
type = ParsedFunction
value = '(-100*x+200)*t+400'
[../]
[./ls_func]
type = ParsedFunction
value = '-0.5*(x+y) + 2.04 - 0.2*t'
[../]
[]
[Materials]
[./mat_time_deriv_prop]
type = GenericConstantMaterial
prop_names = 'rhoCp'
prop_values = 10
[../]
[./therm_cond_prop]
type = GenericConstantMaterial
prop_names = 'diffusion_coefficient'
prop_values = 1.5
[../]
[]
[BCs]
[./left_du]
type = FunctionNeumannBC
variable = u
boundary = 'left'
function = neumann_func
[../]
[./right_u]
type = FunctionDirichletBC
variable = u
boundary = 'right'
function = dirichlet_right_func
[../]
[./bottom_du]
type = FunctionNeumannBC
variable = u
boundary = 'bottom'
function = neumann_func
[../]
[./top_u]
type = FunctionDirichletBC
variable = u
boundary = 'top'
function = dirichlet_top_func
[../]
[]
[ICs]
[./u_ic]
type = ConstantIC
value = 400
variable = u
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
line_search = 'none'
l_tol = 1.0e-6
nl_max_its = 15
nl_rel_tol = 1.0e-10
nl_abs_tol = 1.0e-9
start_time = 0.0
dt = 0.2
end_time = 1.0
max_xfem_update = 1
[]
[Outputs]
interval = 1
execute_on = 'initial timestep_end'
exodus = true
[./console]
type = Console
output_linear = true
[../]
[]
modules/phase_field/test/tests/SoretDiffusion/split_temp.i
[Mesh]
type = GeneratedMesh
dim = 1
nx = 60
xmax = 500
elem_type = EDGE
[]
[GlobalParams]
polynomial_order = 8
[]
[Variables]
[./c]
[../]
[./w]
scaling = 1.0e2
[../]
[./T]
initial_condition = 1000.0
scaling = 1.0e5
[../]
[]
[ICs]
[./c_IC]
type = SmoothCircleIC
x1 = 125.0
y1 = 0.0
radius = 60.0
invalue = 1.0
outvalue = 0.1
int_width = 100.0
variable = c
[../]
[]
[Kernels]
[./c_res]
type = SplitCHParsed
variable = c
kappa_name = kappa
w = w
f_name = F
[../]
[./w_res]
type = SplitCHWRes
variable = w
mob_name = M
[../]
[./w_res_soret]
type = SoretDiffusion
variable = w
c = c
T = T
diff_name = D
Q_name = Qstar
[../]
[./time]
type = CoupledTimeDerivative
variable = w
v = c
[../]
[./HtCond]
type = MatDiffusion
variable = T
diffusivity = thermal_conductivity
[../]
[]
[BCs]
[./Left_T]
type = DirichletBC
variable = T
boundary = left
value = 1000.0
[../]
[./Right_T]
type = DirichletBC
variable = T
boundary = right
value = 1015.0
[../]
[]
[Materials]
[./Copper]
type = PFParamsPolyFreeEnergy
block = 0
c = c
T = T # K
int_width = 60.0
length_scale = 1.0e-9
time_scale = 1.0e-9
D0 = 3.1e-5 # m^2/s, from Brown1980
Em = 0.71 # in eV, from Balluffi1978 Table 2
Ef = 1.28 # in eV, from Balluffi1978 Table 2
surface_energy = 0.708 # Total guess
[../]
[./thcond]
type = ParsedMaterial
block = 0
args = 'c'
function = 'if(c>0.7,1e-8,4e-8)'
f_name = thermal_conductivity
outputs = exodus
[../]
[./free_energy]
type = PolynomialFreeEnergy
block = 0
c = c
derivative_order = 2
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
scheme = 'bdf2'
solve_type = 'PJFNK'
l_max_its = 30
l_tol = 1.0e-4
nl_max_its = 25
nl_rel_tol = 1.0e-9
num_steps = 60
dt = 20.0
[]
[Outputs]
exodus = true
[]
modules/contact/test/tests/bouncing-block-contact/frictional-nodal-min-lm-mortar-disp.i
starting_point = 2e-1
offset = 1e-2
[GlobalParams]
displacements = 'disp_x disp_y'
diffusivity = 1e0
scaling = 1e0
[]
[Mesh]
file = long-bottom-block-1elem-blocks.e
[]
[Variables]
[./disp_x]
block = '1 2'
[../]
[./disp_y]
block = '1 2'
[../]
[./normal_lm]
block = 3
[../]
[./tangential_lm]
block = 3
[../]
[]
[ICs]
[./disp_y]
block = 2
variable = disp_y
value = ${fparse starting_point + offset}
type = ConstantIC
[../]
[]
[Kernels]
[./disp_x]
type = MatDiffusion
variable = disp_x
[../]
[./disp_y]
type = MatDiffusion
variable = disp_y
[../]
[]
[Constraints]
[normal_lm]
type = NormalNodalLMMechanicalContact
master = 20
slave = 10
variable = normal_lm
master_variable = disp_x
disp_y = disp_y
ncp_function_type = min
[]
[normal_x]
type = NormalMortarMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = normal_lm
slave_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = false
[]
[normal_y]
type = NormalMortarMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = normal_lm
slave_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = false
[]
[tangential_lm]
type = TangentialNodalLMMechanicalContact
master = 20
slave = 10
variable = tangential_lm
master_variable = disp_x
disp_y = disp_y
contact_pressure = normal_lm
ncp_function_type = min
mu = .1
[]
[tangential_x]
type = TangentialMortarMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = tangential_lm
slave_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = false
[]
[tangential_y]
type = TangentialMortarMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = tangential_lm
slave_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = false
[]
[]
[BCs]
[./botx]
type = DirichletBC
variable = disp_x
boundary = 40
value = 0.0
[../]
[./boty]
type = DirichletBC
variable = disp_y
boundary = 40
value = 0.0
[../]
[./topy]
type = FunctionDirichletBC
variable = disp_y
boundary = 30
function = '${starting_point} * cos(2 * pi / 40 * t) + ${offset}'
[../]
[./leftx]
type = FunctionDirichletBC
variable = disp_x
boundary = 50
function = '1e-2 * t'
[../]
[]
[Executioner]
type = Transient
end_time = 200
dt = 5
dtmin = .1
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason -pc_svd_monitor -snes_linesearch_monitor -snes_ksp_ew'
petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount -mat_mffd_err'
petsc_options_value = 'lu NONZERO 1e-15 1e-5'
l_max_its = 30
nl_max_its = 20
line_search = 'none'
[]
[Debug]
show_var_residual_norms = true
[]
[Outputs]
[exodus]
type = Exodus
sync_times = '0 5 10 15 20 25 30 35 40 45 50'
file_base = frictional-nodal-min-lm-mortar-disp_out
[]
[dof]
type = DOFMap
execute_on = 'initial'
[]
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Postprocessors]
[./num_nl]
type = NumNonlinearIterations
[../]
[./cumulative]
type = CumulativeValuePostprocessor
postprocessor = num_nl
[../]
[contact]
type = ContactDOFSetSize
variable = normal_lm
subdomain = '3'
execute_on = 'nonlinear timestep_end'
[]
[]
modules/contact/test/tests/bouncing-block-contact/frictionless-nodal-fb-lm-mortar-disp.i
starting_point = 2e-1
offset = 1e-2
[GlobalParams]
displacements = 'disp_x disp_y'
diffusivity = 1e0
scaling = 1e0
[]
[Mesh]
file = long-bottom-block-1elem-blocks.e
[]
[Variables]
[./disp_x]
block = '1 2'
[../]
[./disp_y]
block = '1 2'
[../]
[./normal_lm]
block = 3
[../]
[]
[ICs]
[./disp_y]
block = 2
variable = disp_y
value = ${fparse starting_point + offset}
type = ConstantIC
[../]
[]
[Kernels]
[./disp_x]
type = MatDiffusion
variable = disp_x
[../]
[./disp_y]
type = MatDiffusion
variable = disp_y
[../]
[]
[Constraints]
[./lm]
type = NormalNodalLMMechanicalContact
slave = 10
master = 20
variable = normal_lm
master_variable = disp_x
disp_y = disp_y
ncp_function_type = 'fb'
[../]
[normal_x]
type = NormalMortarMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = normal_lm
slave_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = false
[]
[normal_y]
type = NormalMortarMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = normal_lm
slave_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = false
[]
[]
[BCs]
[./botx]
type = DirichletBC
variable = disp_x
boundary = 40
value = 0.0
[../]
[./boty]
type = DirichletBC
variable = disp_y
boundary = 40
value = 0.0
[../]
[./topy]
type = FunctionDirichletBC
variable = disp_y
boundary = 30
function = '${starting_point} * cos(2 * pi / 40 * t) + ${offset}'
[../]
[./leftx]
type = FunctionDirichletBC
variable = disp_x
boundary = 50
function = '1e-2 * t'
[../]
[]
[Executioner]
type = Transient
end_time = 200
dt = 5
dtmin = .1
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason -pc_svd_monitor -snes_linesearch_monitor'
petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount -mat_mffd_err'
petsc_options_value = 'lu NONZERO 1e-15 1e-5'
l_max_its = 30
nl_max_its = 20
line_search = 'none'
[]
[Debug]
show_var_residual_norms = true
[]
[Outputs]
exodus = true
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Postprocessors]
active = 'num_nl cumulative contact'
[./num_nl]
type = NumNonlinearIterations
[../]
[./cumulative]
type = CumulativeValuePostprocessor
postprocessor = num_nl
[../]
[contact]
type = ContactDOFSetSize
variable = normal_lm
subdomain = '3'
execute_on = 'nonlinear timestep_end'
[]
[]
modules/phase_field/examples/multiphase/GrandPotential3Phase.i
# This is an example of implementation of the multi-phase, multi-order parameter
# grand potential based phase-field model described in Phys. Rev. E, 98, 023309
# (2019). It includes 3 phases with 1 grain of each phase. This example was used
# to generate the results shown in Fig. 3 of the paper.
[Mesh]
type = GeneratedMesh
dim = 1
nx = 60
xmin = -15
xmax = 15
[]
[Variables]
[./w]
[../]
[./etaa0]
[../]
[./etab0]
[../]
[./etad0]
[../]
[]
[ICs]
[./IC_etaa0]
type = FunctionIC
variable = etaa0
function = ic_func_etaa0
[../]
[./IC_etab0]
type = FunctionIC
variable = etab0
function = ic_func_etab0
[../]
[./IC_etad0]
type = ConstantIC
variable = etad0
value = 0.1
[../]
[./IC_w]
type = FunctionIC
variable = w
function = ic_func_w
[../]
[]
[Functions]
[./ic_func_etaa0]
type = ParsedFunction
value = '0.9*0.5*(1.0-tanh((x)/sqrt(2.0)))'
[../]
[./ic_func_etab0]
type = ParsedFunction
value = '0.9*0.5*(1.0+tanh((x)/sqrt(2.0)))'
[../]
[./ic_func_w]
type = ParsedFunction
value = 0
[../]
[]
[Kernels]
# Order parameter eta_alpha0
[./ACa0_bulk]
type = ACGrGrMulti
variable = etaa0
v = 'etab0 etad0'
gamma_names = 'gab gad'
[../]
[./ACa0_sw]
type = ACSwitching
variable = etaa0
Fj_names = 'omegaa omegab omegad'
hj_names = 'ha hb hd'
args = 'etab0 etad0 w'
[../]
[./ACa0_int]
type = ACInterface
variable = etaa0
kappa_name = kappa
[../]
[./ea0_dot]
type = TimeDerivative
variable = etaa0
[../]
# Order parameter eta_beta0
[./ACb0_bulk]
type = ACGrGrMulti
variable = etab0
v = 'etaa0 etad0'
gamma_names = 'gab gbd'
[../]
[./ACb0_sw]
type = ACSwitching
variable = etab0
Fj_names = 'omegaa omegab omegad'
hj_names = 'ha hb hd'
args = 'etaa0 etad0 w'
[../]
[./ACb0_int]
type = ACInterface
variable = etab0
kappa_name = kappa
[../]
[./eb0_dot]
type = TimeDerivative
variable = etab0
[../]
# Order parameter eta_delta0
[./ACd0_bulk]
type = ACGrGrMulti
variable = etad0
v = 'etaa0 etab0'
gamma_names = 'gad gbd'
[../]
[./ACd0_sw]
type = ACSwitching
variable = etad0
Fj_names = 'omegaa omegab omegad'
hj_names = 'ha hb hd'
args = 'etaa0 etab0 w'
[../]
[./ACd0_int]
type = ACInterface
variable = etad0
kappa_name = kappa
[../]
[./ed0_dot]
type = TimeDerivative
variable = etad0
[../]
#Chemical potential
[./w_dot]
type = SusceptibilityTimeDerivative
variable = w
f_name = chi
args = 'etaa0 etab0 etad0'
[../]
[./Diffusion]
type = MatDiffusion
variable = w
diffusivity = Dchi
args = ''
[../]
[./coupled_etaa0dot]
type = CoupledSwitchingTimeDerivative
variable = w
v = etaa0
Fj_names = 'rhoa rhob rhod'
hj_names = 'ha hb hd'
args = 'etaa0 etab0 etad0'
[../]
[./coupled_etab0dot]
type = CoupledSwitchingTimeDerivative
variable = w
v = etab0
Fj_names = 'rhoa rhob rhod'
hj_names = 'ha hb hd'
args = 'etaa0 etab0 etad0'
[../]
[./coupled_etad0dot]
type = CoupledSwitchingTimeDerivative
variable = w
v = etad0
Fj_names = 'rhoa rhob rhod'
hj_names = 'ha hb hd'
args = 'etaa0 etab0 etad0'
[../]
[]
[Materials]
[./ha_test]
type = SwitchingFunctionMultiPhaseMaterial
h_name = ha
all_etas = 'etaa0 etab0 etad0'
phase_etas = 'etaa0'
[../]
[./hb_test]
type = SwitchingFunctionMultiPhaseMaterial
h_name = hb
all_etas = 'etaa0 etab0 etad0'
phase_etas = 'etab0'
[../]
[./hd_test]
type = SwitchingFunctionMultiPhaseMaterial
h_name = hd
all_etas = 'etaa0 etab0 etad0'
phase_etas = 'etad0'
[../]
[./omegaa]
type = DerivativeParsedMaterial
args = 'w'
f_name = omegaa
material_property_names = 'Vm ka caeq'
function = '-0.5*w^2/Vm^2/ka-w/Vm*caeq'
derivative_order = 2
[../]
[./omegab]
type = DerivativeParsedMaterial
args = 'w'
f_name = omegab
material_property_names = 'Vm kb cbeq'
function = '-0.5*w^2/Vm^2/kb-w/Vm*cbeq'
derivative_order = 2
[../]
[./omegad]
type = DerivativeParsedMaterial
args = 'w'
f_name = omegad
material_property_names = 'Vm kd cdeq'
function = '-0.5*w^2/Vm^2/kd-w/Vm*cdeq'
derivative_order = 2
[../]
[./rhoa]
type = DerivativeParsedMaterial
args = 'w'
f_name = rhoa
material_property_names = 'Vm ka caeq'
function = 'w/Vm^2/ka + caeq/Vm'
derivative_order = 2
[../]
[./rhob]
type = DerivativeParsedMaterial
args = 'w'
f_name = rhob
material_property_names = 'Vm kb cbeq'
function = 'w/Vm^2/kb + cbeq/Vm'
derivative_order = 2
[../]
[./rhod]
type = DerivativeParsedMaterial
args = 'w'
f_name = rhod
material_property_names = 'Vm kd cdeq'
function = 'w/Vm^2/kd + cdeq/Vm'
derivative_order = 2
[../]
[./c]
type = ParsedMaterial
material_property_names = 'Vm rhoa rhob rhod ha hb hd'
function = 'Vm * (ha * rhoa + hb * rhob + hd * rhod)'
f_name = c
[../]
[./const]
type = GenericConstantMaterial
prop_names = 'kappa_c kappa L D Vm ka caeq kb cbeq kd cdeq gab gad gbd mu tgrad_corr_mult'
prop_values = '0 1 1.0 1.0 1.0 10.0 0.1 10.0 0.9 10.0 0.5 1.5 1.5 1.5 1.0 0.0'
[../]
[./Mobility]
type = DerivativeParsedMaterial
f_name = Dchi
material_property_names = 'D chi'
function = 'D*chi'
derivative_order = 2
[../]
[./chi]
type = DerivativeParsedMaterial
f_name = chi
material_property_names = 'Vm ha(etaa0,etab0,etad0) ka hb(etaa0,etab0,etad0) kb hd(etaa0,etab0,etad0) kd'
function = '(ha/ka + hb/kb + hd/kd) / Vm^2'
args = 'etaa0 etab0 etad0'
derivative_order = 2
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[VectorPostprocessors]
[./etaa0]
type = LineValueSampler
variable = etaa0
start_point = '-15 0 0'
end_point = '15 0 0'
num_points = 61
sort_by = x
execute_on = 'initial timestep_end final'
[../]
[./etab0]
type = LineValueSampler
variable = etab0
start_point = '-15 0 0'
end_point = '15 0 0'
num_points = 61
sort_by = x
execute_on = 'initial timestep_end final'
[../]
[./etad0]
type = LineValueSampler
variable = etad0
start_point = '-15 0 0'
end_point = '15 0 0'
num_points = 61
sort_by = x
execute_on = 'initial timestep_end final'
[../]
[]
[Executioner]
type = Transient
nl_max_its = 15
scheme = bdf2
solve_type = PJFNK
petsc_options_iname = -pc_type
petsc_options_value = asm
l_max_its = 15
l_tol = 1.0e-3
nl_rel_tol = 1.0e-8
start_time = 0.0
num_steps = 20
nl_abs_tol = 1e-10
dt = 1.0
[]
[Outputs]
[./exodus]
type = Exodus
execute_on = 'initial timestep_end final'
interval = 1
[../]
[./csv]
type = CSV
execute_on = 'initial timestep_end final'
interval = 1
[../]
[]
modules/phase_field/examples/anisotropic_interfaces/GrandPotentialTwophaseAnisotropy.i
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
xmin = -4
xmax = 4
ymin = -4
ymax = 4
uniform_refine = 2
[]
[GlobalParams]
radius = 0.5
int_width = 0.3
x1 = 0
y1 = 0
derivative_order = 2
[]
[Variables]
[./w]
[../]
[./etaa0]
[../]
[./etab0]
[../]
[]
[AuxVariables]
[./bnds]
[../]
[]
[AuxKernels]
[./bnds]
type = BndsCalcAux
variable = bnds
v = 'etaa0 etab0'
[../]
[]
[ICs]
[./w]
type = SmoothCircleIC
variable = w
# note w = A*(c-cleq), A = 1.0, cleq = 0.0 ,i.e., w = c (in the matrix/liquid phase)
outvalue = -4.0
invalue = 0.0
[../]
[./etaa0]
type = SmoothCircleIC
variable = etaa0
#Solid phase
outvalue = 0.0
invalue = 1.0
[../]
[./etab0]
type = SmoothCircleIC
variable = etab0
#Liquid phase
outvalue = 1.0
invalue = 0.0
[../]
[]
[BCs]
[./Periodic]
[./w]
variable = w
auto_direction = 'x y'
[../]
[./etaa0]
variable = etaa0
auto_direction = 'x y'
[../]
[./etab0]
variable = etab0
auto_direction = 'x y'
[../]
[../]
[]
[Kernels]
# Order parameter eta_alpha0
[./ACa0_bulk]
type = ACGrGrMulti
variable = etaa0
v = 'etab0'
gamma_names = 'gab'
[../]
[./ACa0_sw]
type = ACSwitching
variable = etaa0
Fj_names = 'omegaa omegab'
hj_names = 'ha hb'
args = 'etab0 w'
[../]
[./ACa0_int1]
type = ACInterface2DMultiPhase1
variable = etaa0
etas = 'etab0'
kappa_name = kappaa
dkappadgrad_etaa_name = dkappadgrad_etaa
d2kappadgrad_etaa_name = d2kappadgrad_etaa
[../]
[./ACa0_int2]
type = ACInterface2DMultiPhase2
variable = etaa0
kappa_name = kappaa
dkappadgrad_etaa_name = dkappadgrad_etaa
[../]
[./ea0_dot]
type = TimeDerivative
variable = etaa0
[../]
# Order parameter eta_beta0
[./ACb0_bulk]
type = ACGrGrMulti
variable = etab0
v = 'etaa0'
gamma_names = 'gab'
[../]
[./ACb0_sw]
type = ACSwitching
variable = etab0
Fj_names = 'omegaa omegab'
hj_names = 'ha hb'
args = 'etaa0 w'
[../]
[./ACb0_int1]
type = ACInterface2DMultiPhase1
variable = etab0
etas = 'etaa0'
kappa_name = kappab
dkappadgrad_etaa_name = dkappadgrad_etab
d2kappadgrad_etaa_name = d2kappadgrad_etab
[../]
[./ACb0_int2]
type = ACInterface2DMultiPhase2
variable = etab0
kappa_name = kappab
dkappadgrad_etaa_name = dkappadgrad_etab
[../]
[./eb0_dot]
type = TimeDerivative
variable = etab0
[../]
#Chemical potential
[./w_dot]
type = SusceptibilityTimeDerivative
variable = w
f_name = chi
[../]
[./Diffusion]
type = MatDiffusion
variable = w
diffusivity = Dchi
[../]
[./coupled_etaa0dot]
type = CoupledSwitchingTimeDerivative
variable = w
v = etaa0
Fj_names = 'rhoa rhob'
hj_names = 'ha hb'
args = 'etaa0 etab0'
[../]
[./coupled_etab0dot]
type = CoupledSwitchingTimeDerivative
variable = w
v = etab0
Fj_names = 'rhoa rhob'
hj_names = 'ha hb'
args = 'etaa0 etab0'
[../]
[]
[Materials]
[./ha]
type = SwitchingFunctionMultiPhaseMaterial
h_name = ha
all_etas = 'etaa0 etab0'
phase_etas = 'etaa0'
[../]
[./hb]
type = SwitchingFunctionMultiPhaseMaterial
h_name = hb
all_etas = 'etaa0 etab0'
phase_etas = 'etab0'
[../]
[./omegaa]
type = DerivativeParsedMaterial
args = 'w'
f_name = omegaa
material_property_names = 'Vm ka caeq'
function = '-0.5*w^2/Vm^2/ka-w/Vm*caeq'
[../]
[./omegab]
type = DerivativeParsedMaterial
args = 'w'
f_name = omegab
material_property_names = 'Vm kb cbeq'
function = '-0.5*w^2/Vm^2/kb-w/Vm*cbeq'
[../]
[./rhoa]
type = DerivativeParsedMaterial
args = 'w'
f_name = rhoa
material_property_names = 'Vm ka caeq'
function = 'w/Vm^2/ka + caeq/Vm'
[../]
[./rhob]
type = DerivativeParsedMaterial
args = 'w'
f_name = rhob
material_property_names = 'Vm kb cbeq'
function = 'w/Vm^2/kb + cbeq/Vm'
[../]
[./kappaa]
type = InterfaceOrientationMultiphaseMaterial
kappa_name = kappaa
dkappadgrad_etaa_name = dkappadgrad_etaa
d2kappadgrad_etaa_name = d2kappadgrad_etaa
etaa = etaa0
etab = etab0
outputs = exodus
output_properties = 'kappaa'
[../]
[./kappab]
type = InterfaceOrientationMultiphaseMaterial
kappa_name = kappab
dkappadgrad_etaa_name = dkappadgrad_etab
d2kappadgrad_etaa_name = d2kappadgrad_etab
etaa = etab0
etab = etaa0
outputs = exodus
output_properties = 'kappab'
[../]
[./const]
type = GenericConstantMaterial
prop_names = 'L D chi Vm ka caeq kb cbeq gab mu'
prop_values = '1.0 1.0 0.1 1.0 10.0 0.1 10.0 0.9 4.5 10.0'
[../]
[./Mobility]
type = ParsedMaterial
f_name = Dchi
material_property_names = 'D chi'
function = 'D*chi'
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
scheme = bdf2
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
petsc_options_value = 'hypre boomeramg 31'
l_tol = 1.0e-3
l_max_its = 30
nl_max_its = 15
nl_rel_tol = 1.0e-8
nl_abs_tol = 1e-8
end_time = 10.0
[./TimeStepper]
type = IterationAdaptiveDT
dt = 0.0005
cutback_factor = 0.7
growth_factor = 1.2
[../]
[]
[Adaptivity]
initial_steps = 5
max_h_level = 3
initial_marker = err_eta
marker = err_bnds
[./Markers]
[./err_eta]
type = ErrorFractionMarker
coarsen = 0.3
refine = 0.95
indicator = ind_eta
[../]
[./err_bnds]
type = ErrorFractionMarker
coarsen = 0.3
refine = 0.95
indicator = ind_bnds
[../]
[../]
[./Indicators]
[./ind_eta]
type = GradientJumpIndicator
variable = etaa0
[../]
[./ind_bnds]
type = GradientJumpIndicator
variable = bnds
[../]
[../]
[]
[Outputs]
interval = 10
exodus = true
[]
modules/xfem/test/tests/moving_interface/verification/1D_xy_lsdep1mat.i
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #
# XFEM Moving Interface Verification Problem
# Dimensionality: quasi-1D
# Coordinate System: xy
# Material Numbers/Types: level set dep 1 material, 2 region
# Element Order: 1st
# Interface Characteristics: u independent, prescribed level set function
# Description:
# A simple transient heat transfer problem in Cartesian coordinates designed
# with the Method of Manufactured Solutions. This problem was developed to
# verify XFEM performance in the presence of a moving interface for linear
# element models that can be exactly evaluated by FEM/Moose. Both the
# temperature solution and level set function are designed to be linear to
# attempt to minimize error between the Moose/exact solution and XFEM results.
# Thermal conductivity is dependent upon the value of the level set function
# at each timestep.
# Results:
# The temperature at the left boundary (x=0) exhibits the largest difference
# between the FEM/Moose solution and XFEM results. We present the XFEM
# results at this location with 10 digits of precision:
# Time Expected Temperature XFEM Calculated Temperature
# 0.2 440 440
# 0.4 480 479.9999722
# 0.6 520 519.9998726
# 0.8 560 559.9997314
# 1.0 600 599.9996885
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #
[GlobalParams]
order = FIRST
family = LAGRANGE
[]
[Mesh]
type = GeneratedMesh
dim = 2
nx = 4
ny = 1
xmin = 0.0
xmax = 1.0
ymin = 0.0
ymax = 0.5
elem_type = QUAD4
[]
[XFEM]
qrule = moment_fitting
output_cut_plane = true
[]
[UserObjects]
[./level_set_cut_uo]
type = LevelSetCutUserObject
level_set_var = ls
heal_always = true
[../]
[]
[Variables]
[./u]
[../]
[]
[AuxVariables]
[./ls]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./heat_cond]
type = MatDiffusion
variable = u
diffusivity = diffusion_coefficient
[../]
[./vol_heat_src]
type = BodyForce
variable = u
function = src_func
[../]
[./mat_time_deriv]
type = TestMatTimeDerivative
variable = u
mat_prop_value = rhoCp
[../]
[]
[AuxKernels]
[./ls_function]
type = FunctionAux
variable = ls
function = ls_func
[../]
[]
[Constraints]
[./xfem_constraint]
type = XFEMSingleVariableConstraint
variable = u
geometric_cut_userobject = 'level_set_cut_uo'
use_penalty = true
alpha = 1e5
[../]
[]
[Functions]
[./src_func]
type = ParsedFunction
value = 'rhoCp*(-200*x+200)-(0.05*200*t/1.04)'
vars = 'rhoCp'
vals = 10
[../]
[./neumann_func]
type = ParsedFunction
value = '((0.05/1.04)*(1-(x-0.04)-0.2*t) + 1.5)*200*t'
[../]
[./k_func]
type = ParsedFunction
value = '(0.05/1.04)*(1-(x-0.04)-0.2*t) + 1.5'
[../]
[./ls_func]
type = ParsedFunction
value = '1.04 - x - 0.2*t'
[../]
[]
[Materials]
[./mat_time_deriv_prop]
type = GenericConstantMaterial
prop_names = 'rhoCp'
prop_values = 10
[../]
[./therm_cond_prop]
type = GenericFunctionMaterial
prop_names = 'diffusion_coefficient'
prop_values = 'k_func'
[../]
[]
[BCs]
[./left_u]
type = FunctionNeumannBC
variable = u
boundary = 'left'
function = neumann_func
[../]
[./right_u]
type = DirichletBC
variable = u
boundary = 'right'
value = 400
[../]
[]
[ICs]
[./u_ic]
type = ConstantIC
value = 400
variable = u
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
line_search = 'none'
l_tol = 1.0e-6
nl_max_its = 15
nl_rel_tol = 1.0e-10
nl_abs_tol = 1.0e-9
start_time = 0.0
dt = 0.2
end_time = 1.0
max_xfem_update = 1
[]
[Outputs]
interval = 1
execute_on = 'initial timestep_end'
exodus = true
[./console]
type = Console
output_linear = true
[../]
[]
modules/xfem/test/tests/moving_interface/verification/1D_xy_discrete2mat.i
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #
# XFEM Moving Interface Verification Problem
# Dimensionality: quasi-1D
# Coordinate System: xy
# Material Numbers/Types:discrete homog 2 material, 2 region
# Element Order: 1st
# Interface Characteristics: u independent, prescribed level set function
# Description
# A transient heat transfer problem in Cartesian coordinates designed with
# the Method of Manufactured Solutions. This problem was developed to verify
# XFEM performance in the presence of a moving interface separating two
# discrete material regions for linear element models. Both the temperature
# solution and level set function are designed to be linear to attempt to
# minimize error between the exact solution and XFEM results. Thermal
# conductivity, density, and heat capacity are homogeneous in each material
# region with a discontinuous jump in thermal flux between the two material
# regions.
# Results:
# The temperature at the left boundary is determined by the analytical
# solution, so temperature at the right boundary (x=1) should exhibit the
# largest difference between the analytical solution and XFEM results. We
# present the analytical and XFEM results at the material interface position
# and right side boundary at various times.
# Interface:
# Time Expected Temperature XFEM Calculated Temperature
# 20 746.75 746.7235521
# 40 893.05 893.0379081
# 60 1040.15 1040.1527530
#
# Right Boundary (x=1):
# Time Expected Temperature XFEM Calculated Temperature
# 20 720 719.9708681
# 40 840 839.9913293
# 60 960 960.0100886
#
# IMPORTANT NOTE:
# When running this input file, add the --allow-test-objects tag!!!
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #
[GlobalParams]
order = FIRST
family = LAGRANGE
[]
[Mesh]
type = GeneratedMesh
dim = 2
nx = 20
ny = 1
xmin = 0.0
xmax = 1.0
ymin = 0.0
ymax = 0.5
elem_type = QUAD4
[]
[XFEM]
qrule = moment_fitting
output_cut_plane = true
[]
[UserObjects]
[./level_set_cut_uo]
type = LevelSetCutUserObject
level_set_var = phi
heal_always = true
[../]
[]
[Variables]
[./u]
[../]
[]
[AuxVariables]
[./phi]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./heat_cond]
type = MatDiffusion
variable = u
diffusivity = 'diffusion_coefficient'
[../]
[./vol_heat_src]
type = BodyForce
variable = u
function = src_func
[../]
[./mat_time_deriv]
type = TestMatTimeDerivative
variable = u
mat_prop_value = rhoCp
[../]
[]
[AuxKernels]
[./ls_function]
type = FunctionAux
variable = phi
function = ls_func
[../]
[]
[Constraints]
[./xfem_constraint]
type = XFEMSingleVariableConstraint
variable = u
geometric_cut_userobject = 'level_set_cut_uo'
jump_flux = jump_flux_func
use_penalty = true
alpha = 1e5
[../]
[]
[Functions]
[./src_func]
type = ParsedFunction
value = 'phi:=(0.75-x-0.001*t);
i:=(0.75-0.001*t);
if (phi>=0,
10*(8-x),
(7/(1-i))*((i-2)*x + (8-7*i)) )'
[../]
[./right_du_func]
type = ParsedFunction
value = 'i:=(0.75-0.001*t);
(2.0/(1-i))*(-5+5*i+i*t-2*t)'
[../]
[./exact_u_func]
type = ParsedFunction
value = 'phi:=(0.75-x-0.001*t);
i:=(0.75-0.001*t);
if (phi>=0,
605 - 5*x + t*(8-x),
(1/(1-i))*((-5+5*i+i*t-2*t)*x + (605-605*i+8*t-7*t*i)) )'
[../]
[./jump_flux_func]
type = ParsedFunction
value = 'i:=(0.75-0.001*t);
k_1:=(20.0);
k_2:=(2.0);
k_1*(5+t) + (k_2/(1-i))*(-5+5*i+i*t-2*t)'
[../]
[./ls_func]
type = ParsedFunction
value = '0.75 - x - 0.001*t'
[../]
[]
[Materials]
[./mat_time_deriv_prop]
type = GenericConstantMaterial
prop_names = 'A_rhoCp B_rhoCp'
prop_values = '10 7'
[../]
[./therm_cond_prop]
type = GenericConstantMaterial
prop_names = 'A_diffusion_coefficient B_diffusion_coefficient'
prop_values = '20.0 2.0'
[../]
[./combined_rhoCp]
type = LevelSetBiMaterialReal
levelset_positive_base = 'A'
levelset_negative_base = 'B'
level_set_var = phi
prop_name = rhoCp
[../]
[./combined_diffusion_coefficient]
type = LevelSetBiMaterialReal
levelset_positive_base = 'A'
levelset_negative_base = 'B'
level_set_var = phi
prop_name = diffusion_coefficient
[../]
[]
[BCs]
[./left_u]
type = FunctionDirichletBC
variable = u
boundary = 'left'
function = exact_u_func
[../]
[./right_du]
type = FunctionNeumannBC
variable = u
boundary = 'right'
function = right_du_func
[../]
[]
[ICs]
[./u_ic]
type = ConstantIC
value = 600
variable = u
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
# petsc_options_iname = '-pc_type -pc_hypre_type'
# petsc_options_value = 'hypre boomeramg'
petsc_options_iname = '-pc_type'
petsc_options_value = 'lu'
line_search = 'none'
l_tol = 1.0e-6
nl_max_its = 15
nl_rel_tol = 1.0e-10
nl_abs_tol = 1.0e-9
start_time = 0.0
dt = 20
end_time = 60.0
max_xfem_update = 2
[]
[Outputs]
interval = 1
execute_on = 'initial timestep_end'
exodus = true
[./console]
type = Console
output_linear = true
[../]
[]
modules/phase_field/test/tests/MultiSmoothCircleIC/multismoothcircleIC_test.i
[Mesh]
type = GeneratedMesh
dim = 3
nx = 15
ny = 15
nz = 15
xmin = 0
xmax = 100
ymin = 0
ymax = 100
zmin = 0
zmax = 100
elem_type = HEX8
[]
[Variables]
[./c]
order = FIRST
family = LAGRANGE
[../]
[]
[ICs]
[./c]
type = MultiSmoothCircleIC
variable = c
invalue = 1.0
outvalue = 0.0001
bubspac = 30.0 # This spacing is from bubble center to bubble center
numbub = 6
radius = 10.0
int_width = 12.0
radius_variation = 0.2
radius_variation_type = uniform
[../]
[]
[Kernels]
[./ie_c]
type = TimeDerivative
variable = c
[../]
[./diff]
type = MatDiffusion
variable = c
diffusivity = D_v
[../]
[]
[BCs]
[./Periodic]
[./all]
auto_direction = 'x y z'
[../]
[../]
[]
[Materials]
[./Dv]
type = GenericConstantMaterial
prop_names = D_v
prop_values = 0.074802
[../]
[]
[Postprocessors]
[./bubbles]
type = FeatureFloodCount
variable = c
execute_on = 'initial timestep_end'
[../]
[]
[Executioner]
type = Transient
scheme = bdf2
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart -mat_mffd_type'
petsc_options_value = 'hypre boomeramg 101 ds'
l_max_its = 20
l_tol = 1e-4
nl_max_its = 20
nl_rel_tol = 1e-9
nl_abs_tol = 1e-11
start_time = 0.0
num_steps = 1
dt = 100.0
[./Adaptivity]
refine_fraction = .5
[../]
[]
[Outputs]
exodus = true
[]
modules/contact/test/tests/bouncing-block-contact/frictionless-nodal-min-lm-nodal-disp.i
starting_point = 2e-1
offset = 1e-2
[GlobalParams]
displacements = 'disp_x disp_y'
diffusivity = 1e0
scaling = 1e0
[]
[Mesh]
file = long-bottom-block-1elem-blocks.e
[]
[Problem]
kernel_coverage_check = false
[]
[Variables]
[./disp_x]
block = '1 2'
[../]
[./disp_y]
block = '1 2'
[../]
[./normal_lm]
block = 3
[../]
[]
[ICs]
[./disp_y]
block = 2
variable = disp_y
value = ${fparse starting_point + offset}
type = ConstantIC
[../]
[]
[Kernels]
[./disp_x]
type = MatDiffusion
variable = disp_x
[../]
[./disp_y]
type = MatDiffusion
variable = disp_y
[../]
[]
[Constraints]
[./lm]
type = NormalNodalLMMechanicalContact
slave = 10
master = 20
variable = normal_lm
master_variable = disp_x
disp_y = disp_y
[../]
[./disp_x]
type = NormalNodalMechanicalContact
slave = 10
master = 20
variable = disp_x
master_variable = disp_x
lambda = normal_lm
component = x
[../]
[./disp_y]
type = NormalNodalMechanicalContact
slave = 10
master = 20
variable = disp_y
master_variable = disp_y
lambda = normal_lm
component = y
[../]
[]
[BCs]
[./botx]
type = DirichletBC
variable = disp_x
boundary = 40
value = 0.0
[../]
[./boty]
type = DirichletBC
variable = disp_y
boundary = 40
value = 0.0
[../]
[./topy]
type = FunctionDirichletBC
variable = disp_y
boundary = 30
function = '${starting_point} * cos(2 * pi / 40 * t) + ${offset}'
[../]
[./leftx]
type = FunctionDirichletBC
variable = disp_x
boundary = 50
function = '1e-2 * t'
[../]
[]
[Executioner]
type = Transient
end_time = 200
dt = 5
dtmin = .1
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason -pc_svd_monitor -snes_linesearch_monitor'
petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount -mat_mffd_err'
petsc_options_value = 'lu NONZERO 1e-15 1e-5'
l_max_its = 30
nl_max_its = 20
line_search = 'none'
[]
[Debug]
show_var_residual_norms = true
[]
[Outputs]
exodus = true
[dof]
type = DOFMap
execute_on = 'initial'
[]
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Postprocessors]
active = 'num_nl cumulative contact'
[./num_nl]
type = NumNonlinearIterations
[../]
[./cumulative]
type = CumulativeValuePostprocessor
postprocessor = num_nl
[../]
[contact]
type = ContactDOFSetSize
variable = normal_lm
subdomain = '3'
execute_on = 'nonlinear timestep_end'
[]
[]
test/tests/kernels/ad_mat_diffusion/2d_steady_state.i
# This test solves a 2D steady state heat equation
# The error is found by comparing to the analytical solution
# Note that the thermal conductivity, specific heat, and density in this problem
# Are set to 1, and need to be changed to the constants of the material being
# Analyzed
[Mesh]
type = GeneratedMesh
dim = 2
nx = 30
ny = 30
xmax = 2
ymax = 2
[]
[Variables]
[./T]
[../]
[]
[Kernels]
[./diff]
type = MatDiffusion
variable = T
diffusivity = 1
[../]
[]
[BCs]
[./zero]
type = DirichletBC
variable = T
boundary = 'left right bottom'
value = 0
[../]
[./top]
type = FunctionDirichletBC
variable = T
boundary = top
function = '10*sin(pi*x*0.5)'
[../]
[]
[Postprocessors]
[./nodal_error]
type = NodalL2Error
function = '10/(sinh(pi))*sin(pi*x*0.5)*sinh(pi*y*0.5)'
variable = T
outputs = console
[../]
[./elemental_error]
type = ElementL2Error
function = '10/(sinh(pi))*sin(pi*x*0.5)*sinh(pi*y*0.5)'
variable = T
outputs = console
[../]
[]
[Executioner]
type = Steady
[]
[Outputs]
exodus = true
[]
test/tests/kernels/simple_transient_diffusion/ill_conditioned_simple_diffusion.i
[Mesh]
type = GeneratedMesh
dim = 1
nx = 2
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./diff]
type = MatDiffusion
variable = u
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
preset = false
boundary = left
value = 0
[../]
[./right]
type = FunctionDirichletBC
variable = u
preset = false
boundary = right
function = constant
[../]
[]
[Functions]
[constant]
type = ParsedFunction
value = '1'
[]
[ramp]
type = ParsedFunction
value = 't'
[]
[]
[Materials]
active = 'constant'
[constant]
type = GenericConstantMaterial
prop_names = 'D'
prop_values = '1e20'
[]
[function]
type = GenericFunctionMaterial
prop_names = 'D'
prop_values = '10^(t-1)'
[]
[]
[Executioner]
type = Transient
num_steps = 1
dt = 2
dtmin = 2
solve_type = NEWTON
petsc_options = '-pc_svd_monitor -ksp_view_pmat -snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -snes_stol'
petsc_options_value = 'svd 0'
[]
[Outputs]
exodus = true
[]
modules/phase_field/test/tests/phase_field_crystal/PFCEnergyDensity/auxkernel.i
[Mesh]
type = GeneratedMesh
dim = 2
nx = 15
ny = 15
nz = 0
xmax = 6
ymax = 6
zmax = 0
[]
[Variables]
[./n]
[./InitialCondition]
type = RandomIC
min = 0.0
max = 0.1
[../]
[../]
[./u]
scaling = 1e2
[../]
[./v]
scaling = 1e1
[../]
[]
[AuxVariables]
[./ed]
order = CONSTANT
family = MONOMIAL
[../]
[./edrff0]
order = CONSTANT
family = MONOMIAL
[../]
[./edrff1]
order = CONSTANT
family = MONOMIAL
[../]
[./edrff2]
order = CONSTANT
family = MONOMIAL
[../]
[]
[Kernels]
[./ndot]
type = TimeDerivative
variable = n
[../]
[./n_bulk]
type = CHBulkPFCTrad
variable = n
[../]
[./u_term]
type = MatDiffusion
variable = n
v = u
diffusivity = C2
[../]
[./v_term]
type = MatDiffusion
variable = n
v = v
diffusivity = C4
[../]
[./u_rctn]
type = Reaction
variable = u
[../]
[./u_gradn]
type = LaplacianSplit
variable = u
c = n
[../]
[./v_rctn]
type = Reaction
variable = v
[../]
[./v_gradu]
type = LaplacianSplit
variable = v
c = u
[../]
[]
[AuxKernels]
[./Energy_n]
type = PFCEnergyDensity
execute_on = 'initial timestep_end'
variable = ed
v = 'n u v'
[../]
[./Energy_rff0]
type = PFCRFFEnergyDensity
execute_on = 'initial timestep_end'
variable = edrff0
log_approach = tolerance
v = 'n u v'
[../]
[./Energy_rff1]
type = PFCRFFEnergyDensity
execute_on = 'initial timestep_end'
variable = edrff1
log_approach = cancelation
v = 'n u v'
[../]
[./Energy_rff2]
type = PFCRFFEnergyDensity
execute_on = 'initial timestep_end'
variable = edrff2
log_approach = expansion
v = 'n u v'
[../]
[]
[BCs]
[./Periodic]
[./all]
auto_direction = 'x y'
[../]
[../]
[]
[Materials]
[./PFCTrad]
type = PFCTradMaterial
order = FOURTH
[../]
[]
[Postprocessors]
[./Total_free_energy]
type = PFCElementEnergyIntegral
variable = ed
execute_on = 'initial timestep_end'
[../]
[]
[Preconditioning]
active = 'SMP'
[./SMP]
type = SMP
full = true
off_diag_row = 'u n n v'
off_diag_column = 'n u v u'
[../]
[./FDP]
type = FDP
full = true
[../]
[]
[Executioner]
type = Transient
solve_type = NEWTON
# petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
# petsc_options_value = 'hypre boomeramg 101'
# petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
# petsc_options_value = 'asm 101 preonly lu 1'
petsc_options_iname = '-pc_type '
petsc_options_value = 'lu '
l_max_its = 100
l_tol = 1e-04
nl_rel_tol = 1e-09
nl_abs_tol = 1e-11
num_steps = 1
dt = 0.1
[]
[Outputs]
exodus = true
csv = true
[]
modules/xfem/test/tests/moving_interface/verification/1D_rz_lsdep1mat.i
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #
# XFEM Moving Interface Verification Problem
# Dimensionality: quasi-1D
# Coordinate System: rz
# Material Numbers/Types: level set dep 1 material, 2 region
# Element Order: 1st
# Interface Characteristics: u independent, prescribed level set function
# Description:
# A simple transient heat transfer problem in cylindrical coordinates designed
# with the Method of Manufactured Solutions. This problem was developed to
# verify XFEM performance in the presence of a moving interface for linear
# element models that can be exactly evaluated by FEM/Moose. Both the
# temperature solution and level set function are designed to be linear to
# attempt to minimize error between the Moose/exact solution and XFEM results.
# Thermal conductivity is dependent upon the value of the level set function
# at each timestep.
# Results:
# The temperature at the left boundary (x=1) exhibits the largest difference
# between the FEM/Moose solution and XFEM results. We present the XFEM
# results at this location with 10 digits of precision:
# Time Expected Temperature XFEM Calculated Temperature
# 0.2 440 440
# 0.4 480 480.0008131
# 0.6 520 520.0038333
# 0.8 560 560.0088286
# 1.0 600 600.0131612
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #
[GlobalParams]
order = FIRST
family = LAGRANGE
[]
[Problem]
coord_type = RZ
[]
[Mesh]
type = GeneratedMesh
dim = 2
nx = 4
ny = 1
xmin = 1.0
xmax = 2.0
ymin = 0.0
ymax = 0.5
elem_type = QUAD4
[]
[XFEM]
qrule = moment_fitting
output_cut_plane = true
[]
[UserObjects]
[./level_set_cut_uo]
type = LevelSetCutUserObject
level_set_var = ls
heal_always = true
[../]
[]
[Variables]
[./u]
[../]
[]
[AuxVariables]
[./ls]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./heat_cond]
type = MatDiffusion
variable = u
diffusivity = diffusion_coefficient
[../]
[./vol_heat_src]
type = BodyForce
variable = u
function = src_func
[../]
[./mat_time_deriv]
type = TestMatTimeDerivative
variable = u
mat_prop_value = rhoCp
[../]
[]
[AuxKernels]
[./ls_function]
type = FunctionAux
variable = ls
function = ls_func
[../]
[]
[Constraints]
[./xfem_constraint]
type = XFEMSingleVariableConstraint
variable = u
geometric_cut_userobject = 'level_set_cut_uo'
use_penalty = true
alpha = 1e5
[../]
[]
[Functions]
[./src_func]
type = ParsedFunction
value = '10*(-200*x+400) + (1/x)*(310*t - (10/1.02)*x*t - (1/1.02)*t^2)'
[../]
[./neumann_func]
type = ParsedFunction
value = '((0.05/2.04)*(2.04-x-0.2*t) + 1.5)*200*t'
[../]
[./k_func]
type = ParsedFunction
value = '(0.05/2.04)*(2.04-x-0.2*t) + 1.5'
[../]
[./ls_func]
type = ParsedFunction
value = '2.04 - x -0.2*t'
[../]
[]
[Materials]
[./mat_time_deriv_prop]
type = GenericConstantMaterial
prop_names = 'rhoCp'
prop_values = 10
[../]
[./therm_cond_prop]
type = GenericFunctionMaterial
prop_names = 'diffusion_coefficient'
prop_values = 'k_func'
[../]
[]
[BCs]
[./left_u]
type = FunctionNeumannBC
variable = u
boundary = 'left'
function = neumann_func
[../]
[./right_u]
type = DirichletBC
variable = u
boundary = 'right'
value = 400
[../]
[]
[ICs]
[./u_ic]
type = ConstantIC
value = 400
variable = u
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
line_search = 'none'
l_tol = 1.0e-6
nl_max_its = 15
nl_rel_tol = 1.0e-10
nl_abs_tol = 1.0e-9
start_time = 0.0
dt = 0.2
end_time = 1.0
max_xfem_update = 1
[]
[Outputs]
interval = 1
execute_on = 'initial timestep_end'
exodus = true
[./console]
type = Console
output_linear = true
[../]
[]
modules/phase_field/test/tests/GrandPotentialPFM/GrandPotentialPFM.i
# this input file test the implementation of the grand-potential phase-field model based on M.Plapp PRE 84,031601(2011)
# in this simple example, the liquid and solid free energies are parabola with the same curvature and the material properties are constant
# Note that this example also test The SusceptibilityTimeDerivative kernels
[Mesh]
type = GeneratedMesh
dim = 2
nx = 16
ny = 16
xmax = 32
ymax = 32
[]
[GlobalParams]
radius = 20.0
int_width = 4.0
x1 = 0
y1 = 0
[]
[Variables]
[./w]
[../]
[./eta]
[../]
[]
[ICs]
[./w]
type = SmoothCircleIC
variable = w
# note w = A*(c-cleq), A = 1.0, cleq = 0.0 ,i.e., w = c (in the matrix/liquid phase)
outvalue = -0.2
invalue = 0.2
[../]
[./eta]
type = SmoothCircleIC
variable = eta
outvalue = 0.0
invalue = 1.0
[../]
[]
[Kernels]
[./w_dot]
type = SusceptibilityTimeDerivative
variable = w
f_name = chi
args = '' # in this case chi (the susceptibility) is simply a constant
[../]
[./Diffusion]
type = MatDiffusion
variable = w
diffusivity = D
args = ''
[../]
[./coupled_etadot]
type = CoupledSusceptibilityTimeDerivative
variable = w
v = eta
f_name = ft
args = 'eta'
[../]
[./AC_bulk]
type = AllenCahn
variable = eta
f_name = F
args = 'w'
[../]
[./AC_int]
type = ACInterface
variable = eta
[../]
[./e_dot]
type = TimeDerivative
variable = eta
[../]
[]
[Materials]
[./constants]
type = GenericConstantMaterial
prop_names = 'kappa_op D L chi cs cl A'
prop_values = '4.0 1.0 1.0 1.0 0.0 1.0 1.0'
[../]
[./liquid_GrandPotential]
type = DerivativeParsedMaterial
function = '-0.5 * w^2/A - cl * w'
args = 'w'
f_name = f1
material_property_names = 'cl A'
[../]
[./solid_GrandPotential]
type = DerivativeParsedMaterial
function = '-0.5 * w^2/A - cs * w'
args = 'w'
f_name = f2
material_property_names = 'cs A'
[../]
[./switching_function]
type = SwitchingFunctionMaterial
eta = eta
h_order = HIGH
[../]
[./barrier_function]
type = BarrierFunctionMaterial
eta = eta
[../]
[./total_GrandPotential]
type = DerivativeTwoPhaseMaterial
args = 'w'
eta = eta
fa_name = f1
fb_name = f2
derivative_order = 2
W = 1.0
[../]
[./coupled_eta_function]
type = DerivativeParsedMaterial
function = '(cs - cl) * dh'
args = 'eta'
f_name = ft
material_property_names = 'cs cl dh:=D[h,eta]'
derivative_order = 1
outputs = exodus
[../]
[./concentration]
type = ParsedMaterial
f_name = c
material_property_names = 'dF:=D[F,w]'
function = '-dF'
outputs = exodus
[../]
[]
[Postprocessors]
[./C]
type = ElementIntegralMaterialProperty
mat_prop = c
execute_on = 'initial timestep_end'
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
scheme = bdf2
solve_type = NEWTON
l_max_its = 15
l_tol = 1e-3
nl_max_its = 15
nl_rel_tol = 1e-8
nl_abs_tol = 1e-8
num_steps = 5
dt = 10.0
[]
[Outputs]
exodus = true
csv = true
execute_on = 'TIMESTEP_END'
[]
modules/phase_field/test/tests/mobility_derivative/coupledmatdiffusion.i
[Mesh]
type = GeneratedMesh
dim = 2
nx = 15
ny = 15
xmax = 15.0
ymax = 15.0
elem_type = QUAD4
[]
[Variables]
[./c]
[./InitialCondition]
type = CrossIC
x1 = 0.0
x2 = 30.0
y1 = 0.0
y2 = 30.0
[../]
[../]
[./d]
[./InitialCondition]
type = SmoothCircleIC
x1 = 15
y1 = 15
radius = 8
int_width = 3
invalue = 2
outvalue = 0
[../]
[../]
[./u]
[../]
[./w]
[../]
[]
[Kernels]
[./ctime]
type = TimeDerivative
variable = c
[../]
[./umat]
type = MatReaction
variable = c
v = u
mob_name = 1
[../]
[./urxn]
type = Reaction
variable = u
[../]
[./cres]
type = MatDiffusion
variable = u
diffusivity = Dc
args = d
v = c
[../]
[./dtime]
type = TimeDerivative
variable = d
[../]
[./wmat]
type = MatReaction
variable = d
v = w
mob_name = 1
[../]
[./wrxn]
type = Reaction
variable = w
[../]
[./dres]
type = MatDiffusion
variable = w
diffusivity = Dd
args = c
v = d
[../]
[]
[Materials]
[./Dc]
type = DerivativeParsedMaterial
f_name = Dc
function = '0.01+c^2+d'
args = 'c d'
derivative_order = 1
[../]
[./Dd]
type = DerivativeParsedMaterial
f_name = Dd
function = 'd^2+c+1.5'
args = 'c d'
derivative_order = 1
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
scheme = 'BDF2'
solve_type = 'NEWTON'
petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_pc_type -pc_asm_overlap'
petsc_options_value = 'asm 31 lu 1'
dt = 1
num_steps = 2
[]
[Outputs]
exodus = true
[]
test/tests/auxkernels/mesh_integer/mesh_integer.i
[Mesh]
type = MeshGeneratorMesh
[gmg]
type = GeneratedMeshGenerator
dim = 2
xmin = 0
xmax = 1
ymin = 0
ymax = 1
nx = 5
ny = 5
extra_element_integers = 'material_id'
[]
[set_material_id0]
type = SubdomainBoundingBoxGenerator
input = gmg
bottom_left = '0 0 0'
top_right = '0.8 0.6 0'
block_id = 0
location = INSIDE
integer_name = material_id
[]
[set_material_id1]
type = SubdomainBoundingBoxGenerator
input = set_material_id0
bottom_left = '0 0 0'
top_right = '0.8 0.6 0'
block_id = 1
location = OUTSIDE
integer_name = material_id
[]
[]
[Variables]
[u][]
[]
[Kernels]
[diff]
type = MatDiffusion
variable = u
diffusivity = dc
[]
[timederivative]
type = TimeDerivative
variable = u
[]
[sourceterm]
type = BodyForce
variable = u
function = 1
[]
[]
[AuxVariables]
[id]
family = MONOMIAL
order = CONSTANT
[]
[]
[AuxKernels]
[id]
type = ElementIntegerAux
variable = id
integer_names = material_id
[]
[]
[BCs]
[vacuum]
type = VacuumBC
variable = u
boundary = 'right left top bottom'
[]
[]
[Materials]
[dc]
type = ConstantIDMaterial
prop_name = dc
prop_values = '1 2'
id_name = material_id
[]
[]
[Postprocessors]
[unorm]
type = ElementL2Norm
variable = u
[]
[]
[Executioner]
type = Transient
end_time = 0.1
dt = 0.01
nl_abs_tol = 1.e-15
[]
[Outputs]
execute_on = 'timestep_end'
exodus = true
[]
modules/phase_field/test/tests/GrandPotentialPFM/GrandPotentialAnisotropy.i
[Mesh]
type = GeneratedMesh
dim = 2
nx = 15
ny = 15
xmin = -2
xmax = 2
ymin = -2
ymax = 2
[]
# enable_jit set to false in many materials to make this test start up faster.
# It is recommended to set enable_jit = true or just remove these lines for
# production runs with this model
[GlobalParams]
radius = 1.0
int_width = 0.8
x1 = 0
y1 = 0
derivative_order = 2
enable_jit = false
[]
[Variables]
[./w]
[../]
[./etaa0]
[../]
[./etab0]
[../]
[]
[AuxVariables]
[./bnds]
[../]
[]
[AuxKernels]
[./bnds]
type = BndsCalcAux
variable = bnds
v = 'etaa0 etab0'
[../]
[]
[ICs]
[./w]
type = SmoothCircleIC
variable = w
# note w = A*(c-cleq), A = 1.0, cleq = 0.0 ,i.e., w = c (in the matrix/liquid phase)
outvalue = -4.0
invalue = 0.0
[../]
[./etaa0]
type = SmoothCircleIC
variable = etaa0
#Solid phase
outvalue = 0.0
invalue = 1.0
[../]
[./etab0]
type = SmoothCircleIC
variable = etab0
#Liquid phase
outvalue = 1.0
invalue = 0.0
[../]
[]
[BCs]
[./Periodic]
[./w]
variable = w
auto_direction = 'x y'
[../]
[./etaa0]
variable = etaa0
auto_direction = 'x y'
[../]
[./etab0]
variable = etab0
auto_direction = 'x y'
[../]
[../]
[]
[Kernels]
# Order parameter eta_alpha0
[./ACa0_bulk]
type = ACGrGrMulti
variable = etaa0
v = 'etab0'
gamma_names = 'gab'
[../]
[./ACa0_sw]
type = ACSwitching
variable = etaa0
Fj_names = 'omegaa omegab'
hj_names = 'ha hb'
args = 'etab0 w'
[../]
[./ACa0_int1]
type = ACInterface2DMultiPhase1
variable = etaa0
etas = 'etab0'
kappa_name = kappaa
dkappadgrad_etaa_name = dkappadgrad_etaa
d2kappadgrad_etaa_name = d2kappadgrad_etaa
[../]
[./ACa0_int2]
type = ACInterface2DMultiPhase2
variable = etaa0
kappa_name = kappaa
dkappadgrad_etaa_name = dkappadgrad_etaa
[../]
[./ea0_dot]
type = TimeDerivative
variable = etaa0
[../]
# Order parameter eta_beta0
[./ACb0_bulk]
type = ACGrGrMulti
variable = etab0
v = 'etaa0'
gamma_names = 'gab'
[../]
[./ACb0_sw]
type = ACSwitching
variable = etab0
Fj_names = 'omegaa omegab'
hj_names = 'ha hb'
args = 'etaa0 w'
[../]
[./ACb0_int1]
type = ACInterface2DMultiPhase1
variable = etab0
etas = 'etaa0'
kappa_name = kappab
dkappadgrad_etaa_name = dkappadgrad_etab
d2kappadgrad_etaa_name = d2kappadgrad_etab
[../]
[./ACb0_int2]
type = ACInterface2DMultiPhase2
variable = etab0
kappa_name = kappab
dkappadgrad_etaa_name = dkappadgrad_etab
[../]
[./eb0_dot]
type = TimeDerivative
variable = etab0
[../]
#Chemical potential
[./w_dot]
type = SusceptibilityTimeDerivative
variable = w
f_name = chi
[../]
[./Diffusion]
type = MatDiffusion
variable = w
diffusivity = Dchi
[../]
[./coupled_etaa0dot]
type = CoupledSwitchingTimeDerivative
variable = w
v = etaa0
Fj_names = 'rhoa rhob'
hj_names = 'ha hb'
args = 'etaa0 etab0'
[../]
[./coupled_etab0dot]
type = CoupledSwitchingTimeDerivative
variable = w
v = etab0
Fj_names = 'rhoa rhob'
hj_names = 'ha hb'
args = 'etaa0 etab0'
[../]
[]
[Materials]
[./ha]
type = SwitchingFunctionMultiPhaseMaterial
h_name = ha
all_etas = 'etaa0 etab0'
phase_etas = 'etaa0'
[../]
[./hb]
type = SwitchingFunctionMultiPhaseMaterial
h_name = hb
all_etas = 'etaa0 etab0'
phase_etas = 'etab0'
[../]
[./omegaa]
type = DerivativeParsedMaterial
args = 'w'
f_name = omegaa
material_property_names = 'Vm ka caeq'
function = '-0.5*w^2/Vm^2/ka-w/Vm*caeq'
[../]
[./omegab]
type = DerivativeParsedMaterial
args = 'w'
f_name = omegab
material_property_names = 'Vm kb cbeq'
function = '-0.5*w^2/Vm^2/kb-w/Vm*cbeq'
[../]
[./rhoa]
type = DerivativeParsedMaterial
args = 'w'
f_name = rhoa
material_property_names = 'Vm ka caeq'
function = 'w/Vm^2/ka + caeq/Vm'
[../]
[./rhob]
type = DerivativeParsedMaterial
args = 'w'
f_name = rhob
material_property_names = 'Vm kb cbeq'
function = 'w/Vm^2/kb + cbeq/Vm'
[../]
[./kappaa]
type = InterfaceOrientationMultiphaseMaterial
kappa_name = kappaa
dkappadgrad_etaa_name = dkappadgrad_etaa
d2kappadgrad_etaa_name = d2kappadgrad_etaa
etaa = etaa0
etab = etab0
outputs = exodus
output_properties = 'kappaa dkappadgrad_etaa'
[../]
[./kappab]
type = InterfaceOrientationMultiphaseMaterial
kappa_name = kappab
dkappadgrad_etaa_name = dkappadgrad_etab
d2kappadgrad_etaa_name = d2kappadgrad_etab
etaa = etab0
etab = etaa0
outputs = exodus
output_properties = 'kappab dkappadgrad_etab'
[../]
[./const]
type = GenericConstantMaterial
prop_names = 'L D chi Vm ka caeq kb cbeq gab mu'
prop_values = '1.0 1.0 0.1 1.0 10.0 0.1 10.0 0.9 4.5 10.0'
[../]
[./Mobility]
type = ParsedMaterial
f_name = Dchi
material_property_names = 'D chi'
function = 'D*chi'
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
scheme = bdf2
l_tol = 1.0e-5
nl_rel_tol = 1.0e-10
nl_abs_tol = 1e-12
num_steps = 2
dt = 0.001
[]
[Outputs]
exodus = true
[]
modules/heat_conduction/test/tests/sideset_heat_transfer/gap_thermal_ktemp_1D.i
[Mesh]
[mesh]
type = GeneratedMeshGenerator
dim = 1
nx = 2
xmax = 2
[]
[split]
type = SubdomainBoundingBoxGenerator
input = mesh
block_id = 1
bottom_left = '1 0 0'
top_right = '2 0 0'
[]
[interface]
type = SideSetsBetweenSubdomainsGenerator
input = split
master_block = 1
paired_block = 0
new_boundary = 'interface0'
[]
uniform_refine = 4
[]
[Variables]
[T]
order = FIRST
family = MONOMIAL
[]
[]
[AuxVariables]
[Tbulk]
order = FIRST
family = LAGRANGE
initial_condition = 300 # K
[]
[]
[Kernels]
[diff]
type = MatDiffusion
variable = T
diffusivity = conductivity
[]
[source]
type = BodyForce
variable = T
value = 1.0
[]
[]
[DGKernels]
[dg_diff]
type = DGDiffusion
variable = T
epsilon = -1
sigma = 6
diff = conductivity
exclude_boundary = 'interface0'
[]
[]
[InterfaceKernels]
[gap_var]
type = SideSetHeatTransferKernel
variable = T
neighbor_var = T
boundary = 'interface0'
Tbulk_var = Tbulk
[]
[]
[Functions]
# Defining temperature dependent fucntion for conductivity across side set
[kgap]
type = ParsedFunction
value = 't / 200'
[]
[bc_func]
type = ConstantFunction
value = 300
[]
[exact]
type = ParsedFunction
value = '
A := if(x < 1, -0.5, -0.25);
B := if(x < 1, -0.293209850655001, 0.0545267662299068);
C := if(x < 1, 300.206790149345, 300.19547323377);
d := -1;
A * (x+d) * (x+d) + B * (x+d) + C'
[]
[]
[BCs]
[bc_left]
type = DGFunctionDiffusionDirichletBC
boundary = 'left'
variable = T
diff = 'conductivity'
epsilon = -1
sigma = 6
function = bc_func
[]
[bc_right]
type = DGFunctionDiffusionDirichletBC
boundary = 'right'
variable = T
diff = 'conductivity'
epsilon = -1
sigma = 6
function = bc_func
[]
[]
[Materials]
[k0]
type = GenericConstantMaterial
prop_names = 'conductivity'
prop_values = 1.0
block = 0
[]
[k1]
type = GenericConstantMaterial
prop_names = 'conductivity'
prop_values = 2.0
block = 1
[]
[gap_mat]
type = SideSetHeatTransferMaterial
boundary = 'interface0'
# Using temperature dependent function for gap conductivity
conductivity_temperature_function = kgap
# Variable to evaluate conductivity with
gap_temperature = Tbulk
gap_length = 1.0
h_master = 1
h_neighbor = 1
emissivity_master = 1
emissivity_neighbor = 1
[]
[]
[Postprocessors]
[error]
type = ElementL2Error
variable = T
function = exact
[]
[]
[Executioner]
type = Steady
nl_rel_tol = 1e-12
[]
[Outputs]
exodus = true
[]
modules/contact/test/tests/bouncing-block-contact/frictionless-mortar-min-lm-mortar-disp.i
starting_point = 2e-1
offset = 1e-2
[GlobalParams]
displacements = 'disp_x disp_y'
diffusivity = 1e0
scaling = 1e0
[]
[Mesh]
file = long-bottom-block-1elem-blocks.e
[]
[Variables]
[./disp_x]
block = '1 2'
[../]
[./disp_y]
block = '1 2'
[../]
[./normal_lm]
block = 3
family = MONOMIAL
order = CONSTANT
[../]
[]
[ICs]
[./disp_y]
block = 2
variable = disp_y
value = ${fparse starting_point + offset}
type = ConstantIC
[../]
[]
[Kernels]
[./disp_x]
type = MatDiffusion
variable = disp_x
[../]
[./disp_y]
type = MatDiffusion
variable = disp_y
[../]
[]
[Constraints]
[normal_lm]
type = NormalMortarLMMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = normal_lm
slave_variable = disp_x
slave_disp_y = disp_y
use_displaced_mesh = true
compute_primal_residuals = false
ncp_function_type = 'min'
[]
[normal_x]
type = NormalMortarMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = normal_lm
slave_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = false
[]
[normal_y]
type = NormalMortarMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = normal_lm
slave_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = false
[]
[]
[BCs]
[./botx]
type = DirichletBC
variable = disp_x
preset = false
boundary = 40
value = 0.0
[../]
[./boty]
type = DirichletBC
variable = disp_y
preset = false
boundary = 40
value = 0.0
[../]
[./topy]
type = FunctionDirichletBC
variable = disp_y
preset = false
boundary = 30
function = '${starting_point} * cos(2 * pi / 40 * t) + ${offset}'
[../]
[./leftx]
type = FunctionDirichletBC
variable = disp_x
preset = false
boundary = 50
function = '1e-2 * t'
[../]
[]
[Executioner]
type = Transient
end_time = 200
dt = 5
dtmin = .1
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason -pc_svd_monitor -snes_linesearch_monitor'
petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount -mat_mffd_err'
petsc_options_value = 'lu NONZERO 1e-15 1e-5'
l_max_its = 30
nl_max_its = 20
line_search = 'none'
[]
[Debug]
show_var_residual_norms = true
[]
[Outputs]
exodus = true
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Postprocessors]
active = 'num_nl cumulative contact'
[./num_nl]
type = NumNonlinearIterations
[../]
[./cumulative]
type = CumulativeValuePostprocessor
postprocessor = num_nl
[../]
[contact]
type = ContactDOFSetSize
variable = normal_lm
subdomain = '3'
execute_on = 'nonlinear timestep_end'
[]
[]
test/tests/interfacekernels/1d_interface/reaction_1D_steady.i
# Steady-state test for the InterfaceReaction kernel.
#
# Specie M transport from domain 1 (0<=x<=1) to domain 2 (1<x<=2),
# u and v are concentrations in domain 1 and domain 2.
#
# Diffusion in both domains can be described by Ficks law and diffusion
# kernel is applied.
#
# Specie M has different diffusity in different domains, here set as D1=4, D2=2.
#
# Dirichlet boundary conditions are applied, i.e., u(0)=1, v(2)=0
#
# At the interface consider the following
#
# (a) Fluxes are matched from both domains (InterfaceDiffusion kernel)
#
# (b) First-order reaction is R = kf*u - kb*v
#
# Analytical solution is
# u = -0.2*u+1, 0<=u<=1
# v = -0.4*v+0.8, 1<v<=2
[Mesh]
[gen]
type = GeneratedMeshGenerator
dim = 1
nx = 10
xmax = 2
[]
[./subdomain1]
input = gen
type = SubdomainBoundingBoxGenerator
bottom_left = '1.0 0 0'
block_id = 1
top_right = '2.0 1.0 0'
[../]
[./interface]
type = SideSetsBetweenSubdomainsGenerator
input = 'subdomain1'
master_block = '0'
paired_block = '1'
new_boundary = 'master0_interface'
[../]
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
block = '0'
[../]
[./v]
order = FIRST
family = LAGRANGE
block = '1'
[../]
[]
[Kernels]
[./diff_u]
type = MatDiffusion
variable = u
block = '0'
diffusivity = D
[../]
[./diff_v]
type = MatDiffusion
variable = v
block = '1'
diffusivity = D
[../]
[]
[InterfaceKernels]
[./interface]
type = InterfaceDiffusion
variable = u
neighbor_var = 'v'
boundary = 'master0_interface'
D = D
D_neighbor = D
[../]
[./interface_reaction]
type = InterfaceReaction
variable = u
neighbor_var = 'v'
boundary = 'master0_interface'
kf = 1 # Forward reaction rate coefficient
kb = 2 # Backward reaction rate coefficient
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = 'left'
value = 1
[../]
[./right]
type = DirichletBC
variable = v
boundary = 'right'
value = 0
[../]
[]
[Materials]
[./block0]
type = GenericConstantMaterial
block = '0'
prop_names = 'D'
prop_values = '4'
[../]
[./block1]
type = GenericConstantMaterial
block = '1'
prop_names = 'D'
prop_values = '2'
[../]
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Executioner]
type = Steady
solve_type = PJFNK
nl_rel_tol = 1e-10
[]
[Outputs]
print_linear_residuals = true
execute_on = 'FINAL'
exodus = true
csv = true
[]
[Debug]
show_var_residual_norms = true
[]
[Postprocessors]
[./elemental_error_u]
type = ElementL2Error
function = -0.2*x+1
variable = 'u'
block = '0'
[../]
[./elemental_error_v]
type = ElementL2Error
function = -0.4*x+0.8
variable = 'v'
block = '1'
[../]
[]
modules/xfem/test/tests/moving_interface/moving_diffusion.i
[GlobalParams]
order = FIRST
family = LAGRANGE
[]
[XFEM]
qrule = volfrac
output_cut_plane = true
[]
[UserObjects]
[./level_set_cut_uo]
type = LevelSetCutUserObject
level_set_var = ls
heal_always = true
[../]
[]
[Mesh]
type = GeneratedMesh
dim = 2
nx = 5
ny = 3
xmin = 0.0
xmax = 1
ymin = 0.0
ymax = 1
elem_type = QUAD4
[]
[AuxVariables]
[./ls]
order = FIRST
family = LAGRANGE
[../]
[]
[AuxKernels]
[./ls_function]
type = FunctionAux
variable = ls
function = ls_func
[../]
[]
[Variables]
[./u]
[../]
[]
[Functions]
[./ls_func]
type = ParsedFunction
value = 'x-0.76+0.21*t'
[../]
[]
[Kernels]
[./diff]
type = MatDiffusion
variable = u
diffusivity = diffusion_coefficient
[../]
[./time_deriv]
type = TimeDerivative
variable = u
[../]
[]
[Constraints]
[./u_constraint]
type = XFEMSingleVariableConstraint
use_displaced_mesh = false
variable = u
jump = 0
use_penalty = true
alpha = 1e5
geometric_cut_userobject = 'level_set_cut_uo'
[../]
[]
[BCs]
[./right_u]
type = DirichletBC
variable = u
boundary = left
value = 0
[../]
[./left_u]
type = DirichletBC
variable = u
boundary = right
value = 1
[../]
[]
[Materials]
[./diffusivity_A]
type = GenericConstantMaterial
prop_names = A_diffusion_coefficient
prop_values = 5
[../]
[./diffusivity_B]
type = GenericConstantMaterial
prop_names = B_diffusion_coefficient
prop_values = 0.5
[../]
[./diff_combined]
type = LevelSetBiMaterialReal
levelset_positive_base = 'A'
levelset_negative_base = 'B'
level_set_var = ls
prop_name = diffusion_coefficient
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
petsc_options_value = '201 hypre boomeramg 8'
l_max_its = 20
l_tol = 1e-3
nl_max_its = 15
nl_rel_tol = 1e-6
nl_abs_tol = 1e-5
start_time = 0.0
dt = 1
end_time = 2
max_xfem_update = 1
[]
[Outputs]
exodus = true
execute_on = timestep_end
csv = true
perf_graph = true
[./console]
type = Console
output_linear = true
[../]
[]
test/tests/interfacekernels/1d_interface/reaction_1D_transient.i
# Transient-state test for the InterfaceReaction kernel.
#
# Same to steady-state, except the following
#
# Natural BCs are applied (i.e. NewmannBC h=0 at left and right)
[Mesh]
[gen]
type = GeneratedMeshGenerator
dim = 1
nx = 10
xmax = 2
[]
[./subdomain1]
input = gen
type = SubdomainBoundingBoxGenerator
bottom_left = '1.0 0 0'
block_id = 1
top_right = '2.0 1.0 0'
[../]
[./interface]
type = SideSetsBetweenSubdomainsGenerator
input = 'subdomain1'
master_block = '0'
paired_block = '1'
new_boundary = 'master0_interface'
[../]
[]
[Variables]
[./u]
order = FIRST
family = LAGRANGE
block = '0'
[../]
[./v]
order = FIRST
family = LAGRANGE
block = '1'
[../]
[]
[Kernels]
[./diff_u]
type = MatDiffusion
diffusivity = D
variable = u
block = '0'
[../]
[./diff_v]
type = MatDiffusion
diffusivity = D
variable = v
block = '1'
[../]
[./diff_u_dt]
type = TimeDerivative
variable = u
block = '0'
[../]
[./diff_v_dt]
type = TimeDerivative
variable = v
block = '1'
[../]
[./source_u]
type = BodyForce
variable = u
block = '0'
[../]
[]
[InterfaceKernels]
[./interface]
type = InterfaceDiffusion
variable = u
neighbor_var = 'v'
boundary = 'master0_interface'
D = D
D_neighbor = D
[../]
[./interface_reaction]
type = InterfaceReaction
variable = u
neighbor_var = 'v'
boundary = 'master0_interface'
kf = 1 # Forward reaction rate coefficient
kb = 2 # Backward reaction rate coefficient
[../]
[]
[Materials]
[./block0]
type = GenericConstantMaterial
block = '0'
prop_names = 'D'
prop_values = '4'
[../]
[./block1]
type = GenericConstantMaterial
block = '1'
prop_names = 'D'
prop_values = '2'
[../]
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
num_steps = 10
dt = 0.1
solve_type = NEWTON
[]
[Outputs]
exodus = true
print_linear_residuals = true
[]
[Debug]
show_var_residual_norms = true
[]
modules/combined/test/tests/multiphase_mechanics/elasticenergymaterial.i
[Mesh]
type = GeneratedMesh
dim = 2
nx = 25
ny = 25
nz = 0
xmax = 250
ymax = 250
zmax = 0
elem_type = QUAD4
[]
[GlobalParams]
displacements = 'disp_x disp_y'
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[./c]
[./InitialCondition]
type = SmoothCircleIC
x1 = 125.0
y1 = 125.0
radius = 60.0
invalue = 1.0
outvalue = 0.1
int_width = 50.0
[../]
[../]
[]
[BCs]
[./bottom]
type = DirichletBC
boundary = bottom
variable = disp_y
value = 0.0
[../]
[./left]
type = DirichletBC
boundary = left
variable = disp_x
value = 0.0
[../]
[]
[Kernels]
[./TensorMechanics]
[../]
[./dummy]
type = MatDiffusion
variable = c
diffusivity = 0
[../]
[]
[Materials]
[./elasticity_tensor]
type = ComputeElasticityTensor
fill_method = symmetric9
C_ijkl = '3 1 1 3 1 3 1 1 1 '
[../]
[./strain]
type = ComputeSmallStrain
eigenstrain_names = eigenstrain
[../]
[./stress]
type = ComputeLinearElasticStress
[../]
[./prefactor]
type = DerivativeParsedMaterial
args = c
f_name = prefactor
constant_names = 'epsilon0 c0'
constant_expressions = '0.05 0'
function = '(c - c0) * epsilon0'
[../]
[./eigenstrain]
type = ComputeVariableEigenstrain
eigen_base = '1'
args = c
prefactor = prefactor
eigenstrain_name = eigenstrain
[../]
[./elasticenergy]
type = ElasticEnergyMaterial
args = 'c'
outputs = exodus
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
nl_abs_tol = 1e-10
num_steps = 1
petsc_options_iname = '-pc_factor_shift_type'
petsc_options_value = 'nonzero'
[]
[Outputs]
exodus = true
[]
modules/phase_field/test/tests/SplitCH/forward_split_math_test.i
[Mesh]
type = GeneratedMesh
dim = 2
nx = 30
ny = 30
xmax = 25.0
ymax = 25.0
elem_type = QUAD
[]
[Variables]
[./c]
[../]
[./w]
[../]
[]
[ICs]
[./c_IC]
type = CrossIC
variable = c
x1 = 0
x2 = 25
y1 = 0
y2 = 25
[../]
[]
[Kernels]
[./cdot]
type = TimeDerivative
variable = c
[../]
[./grad_w]
type = MatDiffusion
variable = c
v = w
diffusivity = 1.0
[../]
[./grad_c]
type = MatDiffusion
variable = w
v = c
diffusivity = 2.0
[../]
[./w2]
type = CoupledMaterialDerivative
variable = w
v = c
f_name = F
[../]
[./w3]
type = CoefReaction
variable = w
coefficient = -1.0
[../]
[]
[AuxVariables]
[./local_energy]
family = MONOMIAL
order = CONSTANT
[../]
[]
[AuxKernels]
[./local_energy]
type = TotalFreeEnergy
variable = local_energy
f_name = F
kappa_names = kappa_c
interfacial_vars = c
[../]
[]
[Materials]
[./kappa_c]
type = GenericConstantMaterial
prop_names = kappa_c
prop_values = 2.0
[../]
[./free_energy]
type = DerivativeParsedMaterial
args = c
function = '(1 - c)^2 * (1 + c)^2'
f_name = F
[../]
[]
[Postprocessors]
[./total_free_energy]
type = ElementIntegralVariablePostprocessor
variable = local_energy
[../]
[./total_c]
type = ElementIntegralVariablePostprocessor
variable = c
execute_on = 'initial TIMESTEP_END'
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
scheme = 'bdf2'
solve_type = 'NEWTON'
l_max_its = 30
l_tol = 1.0e-4
nl_max_its = 10
nl_rel_tol = 1.0e-10
start_time = 0.0
num_steps = 5
dt = 0.7
[]
[Outputs]
exodus = true
[]
modules/phase_field/test/tests/mobility_derivative/mobility_derivative_split_coupled_test.i
[Mesh]
type = GeneratedMesh
dim = 2
nx = 30
ny = 30
xmax = 30.0
ymax = 30.0
elem_type = QUAD4
[]
[Variables]
[./c]
[../]
[./w]
[../]
[./d]
[../]
[]
[ICs]
[./c_IC]
type = CrossIC
x1 = 0.0
x2 = 30.0
y1 = 0.0
y2 = 30.0
variable = c
[../]
[./d_IC]
type = BoundingBoxIC
x1 = 0.0
x2 = 15.0
y1 = 0.0
y2 = 30.0
inside = 1.0
outside = 0.0
variable = d
[../]
[]
[Kernels]
[./cres]
type = SplitCHParsed
variable = c
kappa_name = kappa_c
w = w
f_name = F
[../]
[./wres]
type = SplitCHWRes
variable = w
mob_name = M
args = 'c d'
[../]
[./time]
type = CoupledTimeDerivative
variable = w
v = c
[../]
[./d_dot]
type = TimeDerivative
variable = d
[../]
[./d_diff]
type = MatDiffusion
variable = d
diffusivity = diffusivity
[../]
[]
[BCs]
[./Periodic]
[./all]
auto_direction = 'x y'
[../]
[../]
[]
[Materials]
[./kappa]
type = GenericConstantMaterial
prop_names = 'kappa_c'
prop_values = '2.0'
[../]
[./mob]
type = DerivativeParsedMaterial
f_name = M
args = 'c d'
function = 'if(d>0.001,d,0.001)*(1-0.5*c^2)'
outputs = exodus
derivative_order = 1
[../]
[./free_energy]
type = MathEBFreeEnergy
f_name = F
c = c
[../]
[./d_diff]
type = GenericConstantMaterial
prop_names = diffusivity
prop_values = 0.1
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
scheme = 'BDF2'
solve_type = 'NEWTON'
petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_pc_type -pc_asm_overlap'
petsc_options_value = 'asm 31 lu 1'
l_max_its = 30
l_tol = 1.0e-4
nl_max_its = 50
nl_rel_tol = 1.0e-10
dt = 10.0
num_steps = 2
[]
[Outputs]
exodus = true
[]
modules/contact/test/tests/bouncing-block-contact/frictionless-nodal-reduced-active-set.i
starting_point = .5
[GlobalParams]
displacements = 'disp_x disp_y'
diffusivity = 1
[]
[Mesh]
file = square-blocks-no-offset.e
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[]
[ICs]
[./disp_y]
block = 2
variable = disp_y
value = ${starting_point}
type = ConstantIC
[../]
[]
[Kernels]
[./disp_x]
type = MatDiffusion
variable = disp_x
[../]
[./disp_y]
type = MatDiffusion
variable = disp_y
[../]
[]
[Constraints]
[./disp_x]
type = RANFSNormalMechanicalContact
slave = 10
master = 20
variable = disp_x
master_variable = disp_x
component = x
[../]
[./disp_y]
type = RANFSNormalMechanicalContact
slave = 10
master = 20
variable = disp_y
master_variable = disp_y
component = y
[../]
[]
[BCs]
[./botx]
type = DirichletBC
variable = disp_x
preset = false
boundary = 40
value = 0.0
[../]
[./topx]
type = DirichletBC
variable = disp_x
preset = false
boundary = 30
value = 0.0
[../]
[./boty]
type = DirichletBC
variable = disp_y
preset = false
boundary = 40
value = 0.0
[../]
[./topy]
type = FunctionDirichletBC
variable = disp_y
preset = false
boundary = 30
function = '${starting_point} - t'
[../]
[]
[Executioner]
type = Transient
num_steps = 1
dt = 1
dtmin = 1
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason -ksp_monitor_true_residual -snes_view'
petsc_options_iname = '-mat_mffd_err -pc_type -pc_hypre_type'
petsc_options_value = '1e-5 hypre boomeramg'
l_max_its = 30
nl_max_its = 20
line_search = 'project'
[]
[Debug]
show_var_residual_norms = true
[]
[Outputs]
[exo]
type = Exodus
execute_on = 'nonlinear'
[]
print_linear_residuals = false
[dof]
type = DOFMap
execute_on = 'initial'
[]
[]
[Postprocessors]
[./num_nl]
type = NumNonlinearIterations
[../]
[./cumulative]
type = CumulativeValuePostprocessor
postprocessor = num_nl
[../]
[]
modules/contact/test/tests/bouncing-block-contact/frictionless-mortar-fb-lm-mortar-disp.i
starting_point = 2e-1
offset = 1e-2
[GlobalParams]
displacements = 'disp_x disp_y'
diffusivity = 1e0
scaling = 1e0
[]
[Mesh]
file = long-bottom-block-1elem-blocks.e
[]
[Variables]
[./disp_x]
block = '1 2'
[../]
[./disp_y]
block = '1 2'
[../]
[./normal_lm]
block = 3
family = MONOMIAL
order = CONSTANT
[../]
[]
[ICs]
[./disp_y]
block = 2
variable = disp_y
value = ${fparse starting_point + offset}
type = ConstantIC
[../]
[]
[Kernels]
[./disp_x]
type = MatDiffusion
variable = disp_x
[../]
[./disp_y]
type = MatDiffusion
variable = disp_y
[../]
[]
[Constraints]
[normal_lm]
type = NormalMortarLMMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = normal_lm
slave_variable = disp_x
slave_disp_y = disp_y
use_displaced_mesh = true
compute_primal_residuals = false
ncp_function_type = 'fb'
[]
[normal_x]
type = NormalMortarMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = normal_lm
slave_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = false
[]
[normal_y]
type = NormalMortarMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = normal_lm
slave_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = false
[]
[]
[BCs]
[./botx]
type = DirichletBC
variable = disp_x
boundary = 40
value = 0.0
[../]
[./boty]
type = DirichletBC
variable = disp_y
boundary = 40
value = 0.0
[../]
[./topy]
type = FunctionDirichletBC
variable = disp_y
boundary = 30
function = '${starting_point} * cos(2 * pi / 40 * t) + ${offset}'
[../]
[./leftx]
type = FunctionDirichletBC
variable = disp_x
boundary = 50
function = '1e-2 * t'
[../]
[]
[Executioner]
type = Transient
end_time = 200
dt = 5
dtmin = .1
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason -pc_svd_monitor -snes_linesearch_monitor'
petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount -mat_mffd_err'
petsc_options_value = 'lu NONZERO 1e-15 1e-5'
l_max_its = 30
nl_max_its = 20
line_search = 'none'
[]
[Debug]
show_var_residual_norms = true
[]
[Outputs]
exodus = true
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Postprocessors]
active = 'num_nl cumulative contact'
[./num_nl]
type = NumNonlinearIterations
[../]
[./cumulative]
type = CumulativeValuePostprocessor
postprocessor = num_nl
[../]
[contact]
type = ContactDOFSetSize
variable = normal_lm
subdomain = '3'
execute_on = 'nonlinear timestep_end'
[]
[]
modules/xfem/test/tests/moving_interface/phase_transition.i
[GlobalParams]
order = FIRST
family = LAGRANGE
[]
[Mesh]
type = GeneratedMesh
dim = 2
nx = 11
ny = 1
xmin = 0
xmax = 2
ymin = 0
ymax = 1
elem_type = QUAD4
[]
[XFEM]
qrule = volfrac
output_cut_plane = true
[]
[UserObjects]
[./velocity]
type = XFEMPhaseTransitionMovingInterfaceVelocity
diffusivity_at_positive_level_set = 5
diffusivity_at_negative_level_set = 1
equilibrium_concentration_jump = 1
value_at_interface_uo = value_uo
[../]
[./value_uo]
type = PointValueAtXFEMInterface
variable = 'u'
geometric_cut_userobject = 'moving_line_segments'
execute_on = 'nonlinear'
level_set_var = ls
[../]
[./moving_line_segments]
type = MovingLineSegmentCutSetUserObject
cut_data = '0.5 0 0.5 1.0 0 0'
heal_always = true
interface_velocity = velocity
[../]
[]
[Variables]
[./u]
[../]
[]
[ICs]
[./ic_u]
type = FunctionIC
variable = u
function = 'if(x<0.51, 2, 1)'
[../]
[]
[AuxVariables]
[./ls]
order = FIRST
family = LAGRANGE
[../]
[]
[Constraints]
[./u_constraint]
type = XFEMEqualValueAtInterface
geometric_cut_userobject = 'moving_line_segments'
use_displaced_mesh = false
variable = u
value = 2
alpha = 1e5
[../]
[]
[Kernels]
[./diff]
type = MatDiffusion
variable = u
diffusivity = diffusion_coefficient
[../]
[./time]
type = TimeDerivative
variable = u
[../]
[]
[AuxKernels]
[./ls]
type = LineSegmentLevelSetAux
line_segment_cut_set_user_object = 'moving_line_segments'
variable = ls
[../]
[]
[Materials]
[./diffusivity_A]
type = GenericConstantMaterial
prop_names = A_diffusion_coefficient
prop_values = 5
[../]
[./diffusivity_B]
type = GenericConstantMaterial
prop_names = B_diffusion_coefficient
prop_values = 1
[../]
[./diff_combined]
type = LevelSetBiMaterialReal
levelset_positive_base = 'A'
levelset_negative_base = 'B'
level_set_var = ls
prop_name = diffusion_coefficient
[../]
[]
[BCs]
# Define boundary conditions
[./left_u]
type = DirichletBC
variable = u
value = 2
boundary = 3
[../]
[./right_u]
type = NeumannBC
variable = u
boundary = 1
value = 0
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
line_search = 'none'
l_tol = 1e-3
nl_max_its = 15
nl_rel_tol = 1e-12
nl_abs_tol = 1e-11
start_time = 0.0
dt = 0.01
num_steps = 4
max_xfem_update = 1
[]
[Outputs]
execute_on = timestep_end
exodus = true
perf_graph = true
[./console]
type = Console
output_linear = true
[../]
csv = true
[]
modules/phase_field/test/tests/GrandPotentialPFM/GrandPotentialMultiphase.i
[Mesh]
type = GeneratedMesh
dim = 2
nx = 20
ny = 20
xmin = -20
xmax = 20
ymin = -20
ymax = 20
[]
[GlobalParams]
op_num = 2
var_name_base = etab
[]
[Variables]
[./w]
[../]
[./etaa0]
[../]
[./etab0]
[../]
[./etab1]
[../]
[]
[AuxVariables]
[./bnds]
order = FIRST
family = LAGRANGE
[../]
[]
[ICs]
[./IC_etaa0]
type = FunctionIC
variable = etaa0
function = ic_func_etaa0
[../]
[./IC_etab0]
type = FunctionIC
variable = etab0
function = ic_func_etab0
[../]
[./IC_etab1]
type = FunctionIC
variable = etab1
function = ic_func_etab1
[../]
[./IC_w]
type = ConstantIC
value = -0.05
variable = w
[../]
[]
[Functions]
[./ic_func_etaa0]
type = ParsedFunction
value = 'r:=sqrt(x^2+y^2);0.5*(1.0-tanh((r-10.0)/sqrt(2.0)))'
[../]
[./ic_func_etab0]
type = ParsedFunction
value = 'r:=sqrt(x^2+y^2);0.5*(1.0+tanh((r-10)/sqrt(2.0)))*0.5*(1.0+tanh((y)/sqrt(2.0)))'
[../]
[./ic_func_etab1]
type = ParsedFunction
value = 'r:=sqrt(x^2+y^2);0.5*(1.0+tanh((r-10)/sqrt(2.0)))*0.5*(1.0-tanh((y)/sqrt(2.0)))'
[../]
[]
[BCs]
[]
[Kernels]
# Order parameter eta_alpha0
[./ACa0_bulk]
type = ACGrGrMulti
variable = etaa0
v = 'etab0 etab1'
gamma_names = 'gab gab'
[../]
[./ACa0_sw]
type = ACSwitching
variable = etaa0
Fj_names = 'omegaa omegab'
hj_names = 'ha hb'
args = 'etab0 etab1 w'
[../]
[./ACa0_int]
type = ACInterface
variable = etaa0
kappa_name = kappa
[../]
[./ea0_dot]
type = TimeDerivative
variable = etaa0
[../]
# Order parameter eta_beta0
[./ACb0_bulk]
type = ACGrGrMulti
variable = etab0
v = 'etaa0 etab1'
gamma_names = 'gab gbb'
[../]
[./ACb0_sw]
type = ACSwitching
variable = etab0
Fj_names = 'omegaa omegab'
hj_names = 'ha hb'
args = 'etaa0 etab1 w'
[../]
[./ACb0_int]
type = ACInterface
variable = etab0
kappa_name = kappa
[../]
[./eb0_dot]
type = TimeDerivative
variable = etab0
[../]
# Order parameter eta_beta1
[./ACb1_bulk]
type = ACGrGrMulti
variable = etab1
v = 'etaa0 etab0'
gamma_names = 'gab gbb'
[../]
[./ACb1_sw]
type = ACSwitching
variable = etab1
Fj_names = 'omegaa omegab'
hj_names = 'ha hb'
args = 'etaa0 etab0 w'
[../]
[./ACb1_int]
type = ACInterface
variable = etab1
kappa_name = kappa
[../]
[./eb1_dot]
type = TimeDerivative
variable = etab1
[../]
#Chemical potential
[./w_dot]
type = SusceptibilityTimeDerivative
variable = w
f_name = chi
args = '' # in this case chi (the susceptibility) is simply a constant
[../]
[./Diffusion]
type = MatDiffusion
variable = w
diffusivity = Dchi
args = ''
[../]
[./coupled_etaa0dot]
type = CoupledSwitchingTimeDerivative
variable = w
v = etaa0
Fj_names = 'rhoa rhob'
hj_names = 'ha hb'
args = 'etaa0 etab0 etab1'
[../]
[./coupled_etab0dot]
type = CoupledSwitchingTimeDerivative
variable = w
v = etab0
Fj_names = 'rhoa rhob'
hj_names = 'ha hb'
args = 'etaa0 etab0 etab1'
[../]
[./coupled_etab1dot]
type = CoupledSwitchingTimeDerivative
variable = w
v = etab1
Fj_names = 'rhoa rhob'
hj_names = 'ha hb'
args = 'etaa0 etab0 etab1'
[../]
[]
[AuxKernels]
[./BndsCalc]
type = BndsCalcAux
variable = bnds
execute_on = timestep_end
[../]
[]
# enable_jit set to false in many materials to make this test start up faster.
# It is recommended to set enable_jit = true or just remove these lines for
# production runs with this model
[Materials]
[./ha]
type = SwitchingFunctionMultiPhaseMaterial
h_name = ha
all_etas = 'etaa0 etab0 etab1'
phase_etas = 'etaa0'
[../]
[./hb]
type = SwitchingFunctionMultiPhaseMaterial
h_name = hb
all_etas = 'etaa0 etab0 etab1'
phase_etas = 'etab0 etab1'
[../]
[./omegaa]
type = DerivativeParsedMaterial
args = 'w'
f_name = omegaa
material_property_names = 'Vm ka caeq'
function = '-0.5*w^2/Vm^2/ka-w/Vm*caeq'
derivative_order = 2
enable_jit = false
[../]
[./omegab]
type = DerivativeParsedMaterial
args = 'w'
f_name = omegab
material_property_names = 'Vm kb cbeq'
function = '-0.5*w^2/Vm^2/kb-w/Vm*cbeq'
derivative_order = 2
enable_jit = false
[../]
[./rhoa]
type = DerivativeParsedMaterial
args = 'w'
f_name = rhoa
material_property_names = 'Vm ka caeq'
function = 'w/Vm^2/ka + caeq/Vm'
derivative_order = 2
enable_jit = false
[../]
[./rhob]
type = DerivativeParsedMaterial
args = 'w'
f_name = rhob
material_property_names = 'Vm kb cbeq'
function = 'w/Vm^2/kb + cbeq/Vm'
derivative_order = 2
enable_jit = false
[../]
[./const]
type = GenericConstantMaterial
prop_names = 'kappa_c kappa L D chi Vm ka caeq kb cbeq gab gbb mu'
prop_values = '0 1 1.0 1.0 1.0 1.0 10.0 0.1 10.0 0.9 4.5 1.5 1.0'
[../]
[./Mobility]
type = DerivativeParsedMaterial
f_name = Dchi
material_property_names = 'D chi'
function = 'D*chi'
derivative_order = 2
enable_jit = false
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
scheme = bdf2
petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_pc_type -pc_asm_overlap'
petsc_options_value = 'asm 31 lu 1'
l_tol = 1.0e-3
nl_rel_tol = 1.0e-8
nl_abs_tol = 1e-8
num_steps = 2
[./TimeStepper]
type = SolutionTimeAdaptiveDT
dt = 0.1
[../]
[]
[Outputs]
exodus = true
[]
modules/xfem/test/tests/moving_interface/verification/2D_rz_lsdep1mat.i
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #
# XFEM Moving Interface Verification Problem
# Dimensionality: 2D
# Coordinate System: rz
# Material Numbers/Types: level set dep 1 material, 2 region
# Element Order: 1st
# Interface Characteristics: u independent, prescribed level set function
# Description:
# Transient 2D heat transfer problem in cylindrical coordinates designed with
# the Method of Manufactured Solutions. This problem was developed to verify
# XFEM performance on linear elements in the presence of a moving interface
# sweeping across the x-y coordinates of a system with thermal conductivity
# dependent upon the transient level set function. This problem can be
# exactly evaluated by FEM/Moose without the moving interface. Both the
# temperature and level set function are designed to be linear to attempt to
# minimize the error between the Moose/exact solution and XFEM results.
# Results:
# The temperature at the bottom left boundary (x=1, y=1) exhibits the largest
# difference between the FEM/Moose solution and XFEM results. We present the
# XFEM results at this location with 10 digits of precision:
# Time Expected Temperature XFEM Calculated Temperature
# 0.2 440 440
# 0.4 480 479.9998717
# 0.6 520 519.9994963
# 0.8 560 559.9989217
# 1.0 600 599.9986735
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #
[GlobalParams]
order = FIRST
family = LAGRANGE
[]
[Problem]
coord_type = RZ
[]
[Mesh]
type = GeneratedMesh
dim = 2
nx = 4
ny = 4
xmin = 1.0
xmax = 2.0
ymin = 1.0
ymax = 2.0
elem_type = QUAD4
[]
[XFEM]
qrule = moment_fitting
output_cut_plane = true
[]
[UserObjects]
[./level_set_cut_uo]
type = LevelSetCutUserObject
level_set_var = ls
heal_always = true
[../]
[]
[Variables]
[./u]
[../]
[]
[AuxVariables]
[./ls]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./heat_cond]
type = MatDiffusion
variable = u
diffusivity = diffusion_coefficient
[../]
[./vol_heat_src]
type = BodyForce
variable = u
function = src_func
[../]
[./mat_time_deriv]
type = TestMatTimeDerivative
variable = u
mat_prop_value = rhoCp
[../]
[]
[AuxKernels]
[./ls_function]
type = FunctionAux
variable = ls
function = ls_func
[../]
[]
[Constraints]
[./xfem_constraint]
type = XFEMSingleVariableConstraint
variable = u
geometric_cut_userobject = 'level_set_cut_uo'
use_penalty = true
alpha = 1e5
[../]
[]
[Functions]
[./src_func]
type = ParsedFunction
value = '10*(-100*x-100*y+400) + t*(-2.5*y/(2.04*x) + 155/x - t/(2.04*x)
- 7.5/2.04)'
[../]
[./neumann_func]
type = ParsedFunction
value = '((0.01/2.04)*(-2.5*x-2.5*y-t)+1.55)*100*t'
[../]
[./dirichlet_right_func]
type = ParsedFunction
value = '(-100*y+200)*t+400'
[../]
[./dirichlet_top_func]
type = ParsedFunction
value = '(-100*x+200)*t+400'
[../]
[./k_func]
type = ParsedFunction
value = '(0.01/2.04)*(-2.5*x-2.5*y-t) + 1.55'
[../]
[./ls_func]
type = ParsedFunction
value = '-0.5*(x+y) + 2.04 -0.2*t'
[../]
[]
[Materials]
[./mat_time_deriv_prop]
type = GenericConstantMaterial
prop_names = 'rhoCp'
prop_values = 10
[../]
[./therm_cond_prop]
type = GenericFunctionMaterial
prop_names = 'diffusion_coefficient'
prop_values = 'k_func'
[../]
[]
[BCs]
[./left_du]
type = FunctionNeumannBC
variable = u
boundary = 'left'
function = neumann_func
[../]
[./right_u]
type = FunctionDirichletBC
variable = u
boundary = 'right'
function = dirichlet_right_func
[../]
[./bottom_du]
type = FunctionNeumannBC
variable = u
boundary = 'bottom'
function = neumann_func
[../]
[./top_u]
type = FunctionDirichletBC
variable = u
boundary = 'top'
function = dirichlet_top_func
[../]
[]
[ICs]
[./u_ic]
type = ConstantIC
value = 400
variable = u
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
line_search = 'none'
l_tol = 1.0e-6
nl_max_its = 15
nl_rel_tol = 1.0e-10
nl_abs_tol = 1.0e-9
start_time = 0.0
dt = 0.2
end_time = 1.0
max_xfem_update = 1
[]
[Outputs]
interval = 1
execute_on = 'initial timestep_end'
exodus = true
[./console]
type = Console
output_linear = true
[../]
[]
modules/contact/test/tests/bouncing-block-contact/frictional-mortar-fb-lm-mortar-disp.i
starting_point = 2e-1
# We offset slightly so we avoid the case where the bottom of the slave block and the top of the
# master block are perfectly vertically aligned which can cause the backtracking line search some
# issues for a coarse mesh (basic line search handles that fine)
offset = 1e-2
[GlobalParams]
displacements = 'disp_x disp_y'
diffusivity = 1e0
scaling = 1e0
[]
[Mesh]
file = long-bottom-block-1elem-blocks.e
[]
[Variables]
[./disp_x]
block = '1 2'
# order = SECOND
[../]
[./disp_y]
block = '1 2'
# order = SECOND
[../]
[./normal_lm]
block = 3
family = MONOMIAL
order = CONSTANT
[../]
[./tangential_lm]
block = 3
family = MONOMIAL
order = CONSTANT
[../]
[]
[ICs]
[./disp_y]
block = 2
variable = disp_y
value = ${fparse starting_point + offset}
type = ConstantIC
[../]
[]
[Kernels]
[./disp_x]
type = MatDiffusion
variable = disp_x
[../]
[./disp_y]
type = MatDiffusion
variable = disp_y
[../]
[]
[Constraints]
[normal_lm]
type = NormalMortarLMMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = normal_lm
slave_variable = disp_x
slave_disp_y = disp_y
use_displaced_mesh = true
compute_primal_residuals = false
ncp_function_type = fb
[]
[normal_x]
type = NormalMortarMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = normal_lm
slave_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = false
[]
[normal_y]
type = NormalMortarMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = normal_lm
slave_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = false
[]
[tangential_lm]
type = TangentialMortarLMMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = tangential_lm
slave_variable = disp_x
slave_disp_y = disp_y
use_displaced_mesh = true
compute_primal_residuals = false
contact_pressure = normal_lm
friction_coefficient = .1
ncp_function_type = fb
[]
[tangential_x]
type = TangentialMortarMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = tangential_lm
slave_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = false
[]
[tangential_y]
type = TangentialMortarMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = tangential_lm
slave_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = false
[]
[]
[BCs]
[./botx]
type = DirichletBC
variable = disp_x
boundary = 40
value = 0.0
[../]
[./boty]
type = DirichletBC
variable = disp_y
boundary = 40
value = 0.0
[../]
[./topy]
type = FunctionDirichletBC
variable = disp_y
boundary = 30
function = '${starting_point} * cos(2 * pi / 40 * t) + ${offset}'
[../]
[./leftx]
type = FunctionDirichletBC
variable = disp_x
boundary = 50
function = '1e-2 * t'
[../]
[]
[Executioner]
type = Transient
end_time = 200
dt = 5
dtmin = .1
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason -pc_svd_monitor -snes_linesearch_monitor -snes_ksp_ew'
petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount -mat_mffd_err'
petsc_options_value = 'lu NONZERO 1e-15 1e-5'
l_max_its = 30
nl_max_its = 20
line_search = 'none'
# [./Predictor]
# type = SimplePredictor
# scale = 1.0
# [../]
[]
[Debug]
show_var_residual_norms = true
[]
[Outputs]
exodus = true
# checkpoint = true
# [./dofmap]
# type = DOFMap
# execute_on = 'initial'
# [../]
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Postprocessors]
[./num_nl]
type = NumNonlinearIterations
[../]
[./cumulative]
type = CumulativeValuePostprocessor
postprocessor = num_nl
[../]
[contact]
type = ContactDOFSetSize
variable = normal_lm
subdomain = '3'
execute_on = 'nonlinear timestep_end'
[]
[]
modules/xfem/test/tests/moving_interface/verification/2D_xy_lsdep1mat.i
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #
# XFEM Moving Interface Verification Problem
# Dimensionality: 2D
# Coordinate System: xy
# Material Numbers/Types: level set dep 1 material, 2 region
# Element Order: 1st
# Interface Characteristics: u independent, prescribed level set function
# Description:
# Transient 2D heat transfer problem in Cartesian coordinates designed with
# the Method of Manufactured Solutions. This problem was developed to verify
# XFEM performance on linear elements in the presence of a moving interface
# sweeping across the x-y coordinates of a system with thermal conductivity
# dependent upon the transient level set function. This problem can be
# exactly evaluated by FEM/Moose without the moving interface. Both the
# temperature and level set function are designed to be linear to attempt to
# minimize the error between the Moose/exact solution and XFEM results.
# Results:
# The temperature at the bottom left boundary (x=0, y=0) exhibits the largest
# difference between the FEM/Moose solution and XFEM results. We present the
# XFEM results at this location with 10 digits of precision:
# Time Expected Temperature XFEM Calculated Temperature
# 0.2 440 440
# 0.4 480 479.9998738
# 0.6 520 519.9995114
# 0.8 560 559.9989360
# 1.0 600 599.9983833
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #
[GlobalParams]
order = FIRST
family = LAGRANGE
[]
[Mesh]
type = GeneratedMesh
dim = 2
nx = 4
ny = 4
xmin = 0.0
xmax = 1.0
ymin = 0.0
ymax = 1.0
elem_type = QUAD4
[]
[XFEM]
qrule = moment_fitting
output_cut_plane = true
[]
[UserObjects]
[./level_set_cut_uo]
type = LevelSetCutUserObject
level_set_var = ls
heal_always = true
[../]
[]
[Variables]
[./u]
[../]
[]
[AuxVariables]
[./ls]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./heat_cond]
type = MatDiffusion
variable = u
diffusivity = diffusion_coefficient
[../]
[./vol_heat_src]
type = BodyForce
variable = u
function = src_func
[../]
[./mat_time_deriv]
type = TestMatTimeDerivative
variable = u
mat_prop_value = rhoCp
[../]
[]
[AuxKernels]
[./ls_function]
type = FunctionAux
variable = ls
function = ls_func
[../]
[]
[Constraints]
[./xfem_constraints]
type = XFEMSingleVariableConstraint
variable = u
geometric_cut_userobject = 'level_set_cut_uo'
use_penalty = true
alpha = 1e5
[../]
[]
[Functions]
[./src_func]
type = ParsedFunction
value = '10*(-100*x-100*y+200)-(5*t/1.04)'
[../]
[./neumann_func]
type = ParsedFunction
value = '((0.01/1.04)*(-2.5*x-2.5*y-t)+1.55)*100*t'
[../]
[./dirichlet_right_func]
type = ParsedFunction
value = '(-100*y+100)*t+400'
[../]
[./dirichlet_top_func]
type = ParsedFunction
value = '(-100*x+100)*t+400'
[../]
[./k_func]
type = ParsedFunction
value = '(0.01/1.04)*(-2.5*x-2.5*y-t)+1.55'
[../]
[./ls_func]
type = ParsedFunction
value = '-0.5*(x+y) + 1.04 -0.2*t'
[../]
[]
[Materials]
[./mat_time_deriv_prop]
type = GenericConstantMaterial
prop_names = 'rhoCp'
prop_values = 10
[../]
[./therm_cond_prop]
type = GenericFunctionMaterial
prop_names = 'diffusion_coefficient'
prop_values = 'k_func'
[../]
[]
[BCs]
[./left_du]
type = FunctionNeumannBC
variable = u
boundary = 'left'
function = neumann_func
[../]
[./right_u]
type = FunctionDirichletBC
variable = u
boundary = 'right'
function = dirichlet_right_func
[../]
[./bottom_du]
type = FunctionNeumannBC
variable = u
boundary = 'bottom'
function = neumann_func
[../]
[./top_u]
type = FunctionDirichletBC
variable = u
boundary = 'top'
function = dirichlet_top_func
[../]
[]
[ICs]
[./u_ic]
type = ConstantIC
value = 400
variable = u
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
line_search = 'none'
l_tol = 1.0e-6
nl_max_its = 15
nl_rel_tol = 1.0e-10
nl_abs_tol = 1.0e-9
start_time = 0.0
dt = 0.2
end_time = 1.0
max_xfem_update = 1
[]
[Outputs]
interval = 1
execute_on = 'initial timestep_end'
exodus = true
[./console]
type = Console
output_linear = true
[../]
[]
modules/phase_field/test/tests/KKS_system/kks_multiphase.i
#
# This test is for the 3-phase KKS model
#
[Mesh]
type = GeneratedMesh
dim = 2
nx = 20
ny = 20
nz = 0
xmin = 0
xmax = 40
ymin = 0
ymax = 40
zmin = 0
zmax = 0
elem_type = QUAD4
[]
[BCs]
[./Periodic]
[./all]
auto_direction = 'x y'
[../]
[../]
[]
[AuxVariables]
[./Energy]
order = CONSTANT
family = MONOMIAL
[../]
[]
[Variables]
# concentration
[./c]
order = FIRST
family = LAGRANGE
[../]
# order parameter 1
[./eta1]
order = FIRST
family = LAGRANGE
[../]
# order parameter 2
[./eta2]
order = FIRST
family = LAGRANGE
[../]
# order parameter 3
[./eta3]
order = FIRST
family = LAGRANGE
initial_condition = 0.0
[../]
# phase concentration 1
[./c1]
order = FIRST
family = LAGRANGE
initial_condition = 0.2
[../]
# phase concentration 2
[./c2]
order = FIRST
family = LAGRANGE
initial_condition = 0.5
[../]
# phase concentration 3
[./c3]
order = FIRST
family = LAGRANGE
initial_condition = 0.8
[../]
# Lagrange multiplier
[./lambda]
order = FIRST
family = LAGRANGE
initial_condition = 0.0
[../]
[]
[ICs]
[./eta1]
variable = eta1
type = SmoothCircleIC
x1 = 20.0
y1 = 20.0
radius = 10
invalue = 0.9
outvalue = 0.1
int_width = 4
[../]
[./eta2]
variable = eta2
type = SmoothCircleIC
x1 = 20.0
y1 = 20.0
radius = 10
invalue = 0.1
outvalue = 0.9
int_width = 4
[../]
[./c]
variable = c
type = SmoothCircleIC
x1 = 20.0
y1 = 20.0
radius = 10
invalue = 0.2
outvalue = 0.5
int_width = 2
[../]
[]
[Materials]
# simple toy free energies
[./f1]
type = DerivativeParsedMaterial
f_name = F1
args = 'c1'
function = '20*(c1-0.2)^2'
[../]
[./f2]
type = DerivativeParsedMaterial
f_name = F2
args = 'c2'
function = '20*(c2-0.5)^2'
[../]
[./f3]
type = DerivativeParsedMaterial
f_name = F3
args = 'c3'
function = '20*(c3-0.8)^2'
[../]
# Switching functions for each phase
# h1(eta1, eta2, eta3)
[./h1]
type = SwitchingFunction3PhaseMaterial
eta_i = eta1
eta_j = eta2
eta_k = eta3
f_name = h1
[../]
# h2(eta1, eta2, eta3)
[./h2]
type = SwitchingFunction3PhaseMaterial
eta_i = eta2
eta_j = eta3
eta_k = eta1
f_name = h2
[../]
# h3(eta1, eta2, eta3)
[./h3]
type = SwitchingFunction3PhaseMaterial
eta_i = eta3
eta_j = eta1
eta_k = eta2
f_name = h3
[../]
# Coefficients for diffusion equation
[./Dh1]
type = DerivativeParsedMaterial
material_property_names = 'D h1'
function = D*h1
f_name = Dh1
[../]
[./Dh2]
type = DerivativeParsedMaterial
material_property_names = 'D h2'
function = D*h2
f_name = Dh2
[../]
[./Dh3]
type = DerivativeParsedMaterial
material_property_names = 'D h3'
function = D*h3
f_name = Dh3
[../]
# Barrier functions for each phase
[./g1]
type = BarrierFunctionMaterial
g_order = SIMPLE
eta = eta1
function_name = g1
[../]
[./g2]
type = BarrierFunctionMaterial
g_order = SIMPLE
eta = eta2
function_name = g2
[../]
[./g3]
type = BarrierFunctionMaterial
g_order = SIMPLE
eta = eta3
function_name = g3
[../]
# constant properties
[./constants]
type = GenericConstantMaterial
prop_names = 'L kappa D'
prop_values = '0.7 1.0 1'
[../]
[]
[Kernels]
#Kernels for diffusion equation
[./diff_time]
type = TimeDerivative
variable = c
[../]
[./diff_c1]
type = MatDiffusion
variable = c
diffusivity = Dh1
v = c1
[../]
[./diff_c2]
type = MatDiffusion
variable = c
diffusivity = Dh2
v = c2
[../]
[./diff_c3]
type = MatDiffusion
variable = c
diffusivity = Dh3
v = c3
[../]
# Kernels for Allen-Cahn equation for eta1
[./deta1dt]
type = TimeDerivative
variable = eta1
[../]
[./ACBulkF1]
type = KKSMultiACBulkF
variable = eta1
Fj_names = 'F1 F2 F3'
hj_names = 'h1 h2 h3'
gi_name = g1
eta_i = eta1
wi = 1.0
args = 'c1 c2 c3 eta2 eta3'
[../]
[./ACBulkC1]
type = KKSMultiACBulkC
variable = eta1
Fj_names = 'F1 F2 F3'
hj_names = 'h1 h2 h3'
cj_names = 'c1 c2 c3'
eta_i = eta1
args = 'eta2 eta3'
[../]
[./ACInterface1]
type = ACInterface
variable = eta1
kappa_name = kappa
[../]
[./multipler1]
type = MatReaction
variable = eta1
v = lambda
mob_name = L
[../]
# Kernels for Allen-Cahn equation for eta2
[./deta2dt]
type = TimeDerivative
variable = eta2
[../]
[./ACBulkF2]
type = KKSMultiACBulkF
variable = eta2
Fj_names = 'F1 F2 F3'
hj_names = 'h1 h2 h3'
gi_name = g2
eta_i = eta2
wi = 1.0
args = 'c1 c2 c3 eta1 eta3'
[../]
[./ACBulkC2]
type = KKSMultiACBulkC
variable = eta2
Fj_names = 'F1 F2 F3'
hj_names = 'h1 h2 h3'
cj_names = 'c1 c2 c3'
eta_i = eta2
args = 'eta1 eta3'
[../]
[./ACInterface2]
type = ACInterface
variable = eta2
kappa_name = kappa
[../]
[./multipler2]
type = MatReaction
variable = eta2
v = lambda
mob_name = L
[../]
# Kernels for the Lagrange multiplier equation
[./mult_lambda]
type = MatReaction
variable = lambda
mob_name = 3
[../]
[./mult_ACBulkF_1]
type = KKSMultiACBulkF
variable = lambda
Fj_names = 'F1 F2 F3'
hj_names = 'h1 h2 h3'
gi_name = g1
eta_i = eta1
wi = 1.0
mob_name = 1
args = 'c1 c2 c3 eta2 eta3'
[../]
[./mult_ACBulkC_1]
type = KKSMultiACBulkC
variable = lambda
Fj_names = 'F1 F2 F3'
hj_names = 'h1 h2 h3'
cj_names = 'c1 c2 c3'
eta_i = eta1
args = 'eta2 eta3'
mob_name = 1
[../]
[./mult_CoupledACint_1]
type = SimpleCoupledACInterface
variable = lambda
v = eta1
kappa_name = kappa
mob_name = 1
[../]
[./mult_ACBulkF_2]
type = KKSMultiACBulkF
variable = lambda
Fj_names = 'F1 F2 F3'
hj_names = 'h1 h2 h3'
gi_name = g2
eta_i = eta2
wi = 1.0
mob_name = 1
args = 'c1 c2 c3 eta1 eta3'
[../]
[./mult_ACBulkC_2]
type = KKSMultiACBulkC
variable = lambda
Fj_names = 'F1 F2 F3'
hj_names = 'h1 h2 h3'
cj_names = 'c1 c2 c3'
eta_i = eta2
args = 'eta1 eta3'
mob_name = 1
[../]
[./mult_CoupledACint_2]
type = SimpleCoupledACInterface
variable = lambda
v = eta2
kappa_name = kappa
mob_name = 1
[../]
[./mult_ACBulkF_3]
type = KKSMultiACBulkF
variable = lambda
Fj_names = 'F1 F2 F3'
hj_names = 'h1 h2 h3'
gi_name = g3
eta_i = eta3
wi = 1.0
mob_name = 1
args = 'c1 c2 c3 eta1 eta2'
[../]
[./mult_ACBulkC_3]
type = KKSMultiACBulkC
variable = lambda
Fj_names = 'F1 F2 F3'
hj_names = 'h1 h2 h3'
cj_names = 'c1 c2 c3'
eta_i = eta3
args = 'eta1 eta2'
mob_name = 1
[../]
[./mult_CoupledACint_3]
type = SimpleCoupledACInterface
variable = lambda
v = eta3
kappa_name = kappa
mob_name = 1
[../]
# Kernels for constraint equation eta1 + eta2 + eta3 = 1
# eta3 is the nonlinear variable for the constraint equation
[./eta3reaction]
type = MatReaction
variable = eta3
mob_name = 1
[../]
[./eta1reaction]
type = MatReaction
variable = eta3
v = eta1
mob_name = 1
[../]
[./eta2reaction]
type = MatReaction
variable = eta3
v = eta2
mob_name = 1
[../]
[./one]
type = BodyForce
variable = eta3
value = -1.0
[../]
# Phase concentration constraints
[./chempot12]
type = KKSPhaseChemicalPotential
variable = c1
cb = c2
fa_name = F1
fb_name = F2
[../]
[./chempot23]
type = KKSPhaseChemicalPotential
variable = c2
cb = c3
fa_name = F2
fb_name = F3
[../]
[./phaseconcentration]
type = KKSMultiPhaseConcentration
variable = c3
cj = 'c1 c2 c3'
hj_names = 'h1 h2 h3'
etas = 'eta1 eta2 eta3'
c = c
[../]
[]
[AuxKernels]
[./Energy_total]
type = KKSMultiFreeEnergy
Fj_names = 'F1 F2 F3'
hj_names = 'h1 h2 h3'
gj_names = 'g1 g2 g3'
variable = Energy
w = 1
interfacial_vars = 'eta1 eta2 eta3'
kappa_names = 'kappa kappa kappa'
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type'
petsc_options_value = 'asm ilu nonzero'
l_max_its = 30
nl_max_its = 10
l_tol = 1.0e-4
nl_rel_tol = 1.0e-10
nl_abs_tol = 1.0e-11
num_steps = 2
dt = 0.5
[]
[Preconditioning]
active = 'full'
[./full]
type = SMP
full = true
[../]
[./mydebug]
type = FDP
full = true
[../]
[]
[Outputs]
exodus = true
[]
modules/heat_conduction/test/tests/sideset_heat_transfer/gap_thermal_1D.i
[Mesh]
[mesh]
type = GeneratedMeshGenerator
dim = 1
nx = 2
xmax = 2
[]
[split]
type = SubdomainBoundingBoxGenerator
input = mesh
block_id = 1
bottom_left = '1 0 0'
top_right = '2 0 0'
[]
[interface]
type = SideSetsBetweenSubdomainsGenerator
input = split
master_block = 1
paired_block = 0
new_boundary = 'interface0'
[]
uniform_refine = 4
[]
[Variables]
# Defining a DFEM variable to handle gap discontinuity
[T]
order = FIRST
family = MONOMIAL
[]
[]
[AuxVariables]
# Auxvariable containing bulk temperature of gap
[Tbulk]
order = FIRST
family = LAGRANGE
initial_condition = 300 # K
[]
[]
[Kernels]
[diff]
type = MatDiffusion
variable = T
diffusivity = conductivity
[]
[source]
type = BodyForce
variable = T
value = 1.0
[]
[]
[DGKernels]
# DG kernel to represent diffusion accross element faces
[./dg_diff]
type = DGDiffusion
variable = T
epsilon = -1
sigma = 6
diff = conductivity
# Ignoring gap side set because no diffusion accross there
exclude_boundary = 'interface0'
[../]
[]
[InterfaceKernels]
active = 'gap'
# Heat transfer kernel using Tbulk as material
[gap]
type = SideSetHeatTransferKernel
variable = T
neighbor_var = T
boundary = 'interface0'
[]
# Heat transfer kernel using Tbulk as auxvariable
[gap_var]
type = SideSetHeatTransferKernel
variable = T
neighbor_var = T
boundary = 'interface0'
Tbulk_var = Tbulk
[]
[]
[Functions]
[bc_func]
type = ConstantFunction
value = 300
[]
[exact]
type = ParsedFunction
value = '
A := if(x < 1, -0.5, -0.25);
B := if(x < 1, -0.293209850655001, 0.0545267662299068);
C := if(x < 1, 300.206790149345, 300.19547323377);
d := -1;
A * (x+d) * (x+d) + B * (x+d) + C'
[]
[]
[BCs]
[bc_left]
type = DGFunctionDiffusionDirichletBC
boundary = 'left'
variable = T
diff = 'conductivity'
epsilon = -1
sigma = 6
function = bc_func
[]
[bc_right]
type = DGFunctionDiffusionDirichletBC
boundary = 'right'
variable = T
diff = 'conductivity'
epsilon = -1
sigma = 6
function = bc_func
[]
[]
[Materials]
[k0]
type = GenericConstantMaterial
prop_names = 'conductivity'
prop_values = 1.0
block = 0
[]
[k1]
type = GenericConstantMaterial
prop_names = 'conductivity'
prop_values = 2.0
block = 1
[]
[gap_mat]
type = SideSetHeatTransferMaterial
boundary = 'interface0'
conductivity = 1.5
gap_length = 1.0
h_master = 1
h_neighbor = 1
Tbulk = 300
emissivity_master = 1
emissivity_neighbor = 1
[]
[]
[Postprocessors]
[error]
type = ElementL2Error
variable = T
function = exact
[]
[]
[Executioner]
type = Steady
nl_rel_tol = 1e-12
[]
[Outputs]
exodus = true
[]
modules/contact/test/tests/bouncing-block-contact/frictionless-nodal-min-lm-mortar-disp.i
starting_point = 2e-1
offset = 1e-2
[GlobalParams]
displacements = 'disp_x disp_y'
diffusivity = 1e0
scaling = 1e0
[]
[Mesh]
file = long-bottom-block-1elem-blocks.e
[]
[Variables]
[./disp_x]
block = '1 2'
[../]
[./disp_y]
block = '1 2'
[../]
[./normal_lm]
block = 3
[../]
[]
[ICs]
[./disp_y]
block = 2
variable = disp_y
value = ${fparse starting_point + offset}
type = ConstantIC
[../]
[]
[Kernels]
[./disp_x]
type = MatDiffusion
variable = disp_x
[../]
[./disp_y]
type = MatDiffusion
variable = disp_y
[../]
[]
[Constraints]
[./lm]
type = NormalNodalLMMechanicalContact
slave = 10
master = 20
variable = normal_lm
master_variable = disp_x
disp_y = disp_y
[../]
[normal_x]
type = NormalMortarMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = normal_lm
slave_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = false
[]
[normal_y]
type = NormalMortarMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = normal_lm
slave_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = false
[]
[]
[BCs]
[./botx]
type = DirichletBC
variable = disp_x
boundary = 40
value = 0.0
[../]
[./boty]
type = DirichletBC
variable = disp_y
boundary = 40
value = 0.0
[../]
[./topy]
type = FunctionDirichletBC
variable = disp_y
boundary = 30
function = '${starting_point} * cos(2 * pi / 40 * t) + ${offset}'
[../]
[./leftx]
type = FunctionDirichletBC
variable = disp_x
boundary = 50
function = '1e-2 * t'
[../]
[]
[Executioner]
type = Transient
end_time = 200
dt = 5
dtmin = .1
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason -pc_svd_monitor -snes_linesearch_monitor'
petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount -mat_mffd_err'
petsc_options_value = 'lu NONZERO 1e-15 1e-5'
l_max_its = 30
nl_max_its = 20
line_search = 'none'
[]
[Debug]
show_var_residual_norms = true
[]
[Outputs]
exodus = true
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Postprocessors]
active = 'num_nl cumulative contact'
[./num_nl]
type = NumNonlinearIterations
[../]
[./cumulative]
type = CumulativeValuePostprocessor
postprocessor = num_nl
[../]
[contact]
type = ContactDOFSetSize
variable = normal_lm
subdomain = '3'
execute_on = 'nonlinear timestep_end'
[]
[]
modules/contact/test/tests/bouncing-block-contact/frictional-mortar-min-lm-mortar-disp.i
starting_point = 2e-1
# We offset slightly so we avoid the case where the bottom of the slave block and the top of the
# master block are perfectly vertically aligned which can cause the backtracking line search some
# issues for a coarse mesh (basic line search handles that fine)
offset = 1e-2
[GlobalParams]
displacements = 'disp_x disp_y'
diffusivity = 1e0
scaling = 1e0
[]
[Mesh]
file = long-bottom-block-1elem-blocks.e
[]
[Variables]
[./disp_x]
block = '1 2'
# order = SECOND
[../]
[./disp_y]
block = '1 2'
# order = SECOND
[../]
[./normal_lm]
block = 3
family = MONOMIAL
order = CONSTANT
[../]
[./tangential_lm]
block = 3
family = MONOMIAL
order = CONSTANT
[../]
[]
[ICs]
[./disp_y]
block = 2
variable = disp_y
value = ${fparse starting_point + offset}
type = ConstantIC
[../]
[]
[Kernels]
[./disp_x]
type = MatDiffusion
variable = disp_x
[../]
[./disp_y]
type = MatDiffusion
variable = disp_y
[../]
[]
[Constraints]
[normal_lm]
type = NormalMortarLMMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = normal_lm
slave_variable = disp_x
slave_disp_y = disp_y
use_displaced_mesh = true
compute_primal_residuals = false
ncp_function_type = min
[]
[normal_x]
type = NormalMortarMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = normal_lm
slave_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = false
[]
[normal_y]
type = NormalMortarMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = normal_lm
slave_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = false
[]
[tangential_lm]
type = TangentialMortarLMMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = tangential_lm
slave_variable = disp_x
slave_disp_y = disp_y
use_displaced_mesh = true
compute_primal_residuals = false
contact_pressure = normal_lm
friction_coefficient = .1
ncp_function_type = min
[]
[tangential_x]
type = TangentialMortarMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = tangential_lm
slave_variable = disp_x
component = x
use_displaced_mesh = true
compute_lm_residuals = false
[]
[tangential_y]
type = TangentialMortarMechanicalContact
master_boundary = 20
slave_boundary = 10
master_subdomain = 4
slave_subdomain = 3
variable = tangential_lm
slave_variable = disp_y
component = y
use_displaced_mesh = true
compute_lm_residuals = false
[]
[]
[BCs]
[./botx]
type = DirichletBC
variable = disp_x
preset = false
boundary = 40
value = 0.0
[../]
[./boty]
type = DirichletBC
variable = disp_y
preset = false
boundary = 40
value = 0.0
[../]
[./topy]
type = FunctionDirichletBC
variable = disp_y
preset = false
boundary = 30
function = '${starting_point} * cos(2 * pi / 40 * t) + ${offset}'
[../]
[./leftx]
type = FunctionDirichletBC
variable = disp_x
preset = false
boundary = 50
function = '1e-2 * t'
[../]
[]
[Executioner]
type = Transient
end_time = 200
dt = 5
dtmin = .1
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason -pc_svd_monitor -snes_linesearch_monitor -snes_ksp_ew'
petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount -mat_mffd_err'
petsc_options_value = 'lu NONZERO 1e-15 1e-5'
l_max_its = 30
nl_max_its = 20
line_search = 'none'
[]
[Debug]
show_var_residual_norms = true
[]
[Outputs]
exodus = true
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Postprocessors]
[./num_nl]
type = NumNonlinearIterations
[../]
[./cumulative]
type = CumulativeValuePostprocessor
postprocessor = num_nl
[../]
[contact]
type = ContactDOFSetSize
variable = normal_lm
subdomain = '3'
execute_on = 'nonlinear timestep_end'
[]
[]
modules/phase_field/examples/anisotropic_interfaces/GrandPotentialSolidification.i
[Mesh]
type = GeneratedMesh
dim = 2
nx = 28
ny = 28
xmin = -7
xmax = 7
ymin = -7
ymax = 7
uniform_refine = 2
[]
[GlobalParams]
radius = 0.2
int_width = 0.1
x1 = 0.0
y1 = 0.0
derivative_order = 2
[]
[Variables]
[./w]
[../]
[./etaa0]
[../]
[./etab0]
[../]
[./T]
[../]
[]
[AuxVariables]
[./bnds]
[../]
[]
[AuxKernels]
[./bnds]
type = BndsCalcAux
variable = bnds
v = 'etaa0 etab0'
[../]
[]
[ICs]
[./w]
type = SmoothCircleIC
variable = w
# note w = A*(c-cleq), A = 1.0, cleq = 0.0 ,i.e., w = c (in the matrix/liquid phase)
outvalue = -4.0
invalue = 0.0
[../]
[./etaa0]
type = SmoothCircleIC
variable = etaa0
#Solid phase
outvalue = 0.0
invalue = 1.0
[../]
[./etab0]
type = SmoothCircleIC
variable = etab0
#Liquid phase
outvalue = 1.0
invalue = 0.0
[../]
[]
[Kernels]
# Order parameter eta_alpha0
[./ACa0_bulk]
type = ACGrGrMulti
variable = etaa0
v = 'etab0'
gamma_names = 'gab'
[../]
[./ACa0_sw]
type = ACSwitching
variable = etaa0
Fj_names = 'omegaa omegab'
hj_names = 'ha hb'
args = 'etab0 w T'
[../]
[./ACa0_int1]
type = ACInterface2DMultiPhase1
variable = etaa0
etas = 'etab0'
kappa_name = kappaa
dkappadgrad_etaa_name = dkappadgrad_etaa
d2kappadgrad_etaa_name = d2kappadgrad_etaa
[../]
[./ACa0_int2]
type = ACInterface2DMultiPhase2
variable = etaa0
kappa_name = kappaa
dkappadgrad_etaa_name = dkappadgrad_etaa
[../]
[./ea0_dot]
type = TimeDerivative
variable = etaa0
[../]
# Order parameter eta_beta0
[./ACb0_bulk]
type = ACGrGrMulti
variable = etab0
v = 'etaa0'
gamma_names = 'gab'
[../]
[./ACb0_sw]
type = ACSwitching
variable = etab0
Fj_names = 'omegaa omegab'
hj_names = 'ha hb'
args = 'etaa0 w T'
[../]
[./ACb0_int1]
type = ACInterface2DMultiPhase1
variable = etab0
etas = 'etaa0'
kappa_name = kappab
dkappadgrad_etaa_name = dkappadgrad_etab
d2kappadgrad_etaa_name = d2kappadgrad_etab
[../]
[./ACb0_int2]
type = ACInterface2DMultiPhase2
variable = etab0
kappa_name = kappab
dkappadgrad_etaa_name = dkappadgrad_etab
[../]
[./eb0_dot]
type = TimeDerivative
variable = etab0
[../]
#Chemical potential
[./w_dot]
type = SusceptibilityTimeDerivative
variable = w
f_name = chi
[../]
[./Diffusion]
type = MatDiffusion
variable = w
diffusivity = Dchi
[../]
[./coupled_etaa0dot]
type = CoupledSwitchingTimeDerivative
variable = w
v = etaa0
Fj_names = 'rhoa rhob'
hj_names = 'ha hb'
args = 'etaa0 etab0'
[../]
[./coupled_etab0dot]
type = CoupledSwitchingTimeDerivative
variable = w
v = etab0
Fj_names = 'rhoa rhob'
hj_names = 'ha hb'
args = 'etaa0 etab0'
[../]
[./T_dot]
type = TimeDerivative
variable = T
[../]
[./CoefDiffusion]
type = Diffusion
variable = T
[../]
[./etaa0_dot_T]
type = CoefCoupledTimeDerivative
variable = T
v = etaa0
coef = -5.0
[../]
[]
[Materials]
[./ha]
type = SwitchingFunctionMultiPhaseMaterial
h_name = ha
all_etas = 'etaa0 etab0'
phase_etas = 'etaa0'
[../]
[./hb]
type = SwitchingFunctionMultiPhaseMaterial
h_name = hb
all_etas = 'etaa0 etab0'
phase_etas = 'etab0'
[../]
[./omegaa]
type = DerivativeParsedMaterial
args = 'w'
f_name = omegaa
material_property_names = 'Vm ka caeq'
function = '-0.5*w^2/Vm^2/ka-w/Vm*caeq'
[../]
[./omegab]
type = DerivativeParsedMaterial
args = 'w T'
f_name = omegab
material_property_names = 'Vm kb cbeq S Tm'
function = '-0.5*w^2/Vm^2/kb-w/Vm*cbeq-S*(T-Tm)'
[../]
[./rhoa]
type = DerivativeParsedMaterial
args = 'w'
f_name = rhoa
material_property_names = 'Vm ka caeq'
function = 'w/Vm^2/ka + caeq/Vm'
[../]
[./rhob]
type = DerivativeParsedMaterial
args = 'w'
f_name = rhob
material_property_names = 'Vm kb cbeq'
function = 'w/Vm^2/kb + cbeq/Vm'
[../]
[./kappaa]
type = InterfaceOrientationMultiphaseMaterial
kappa_name = kappaa
dkappadgrad_etaa_name = dkappadgrad_etaa
d2kappadgrad_etaa_name = d2kappadgrad_etaa
etaa = etaa0
etab = etab0
anisotropy_strength = 0.05
kappa_bar = 0.05
outputs = exodus
output_properties = 'kappaa'
[../]
[./kappab]
type = InterfaceOrientationMultiphaseMaterial
kappa_name = kappab
dkappadgrad_etaa_name = dkappadgrad_etab
d2kappadgrad_etaa_name = d2kappadgrad_etab
etaa = etab0
etab = etaa0
anisotropy_strength = 0.05
kappa_bar = 0.05
outputs = exodus
output_properties = 'kappab'
[../]
[./const]
type = GenericConstantMaterial
prop_names = 'L D chi Vm ka caeq kb cbeq gab mu S Tm'
prop_values = '33.33 1.0 0.1 1.0 10.0 0.1 10.0 0.9 4.5 10.0 1.0 5.0'
[../]
[./Mobility]
type = ParsedMaterial
f_name = Dchi
material_property_names = 'D chi'
function = 'D*chi'
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
scheme = bdf2
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
petsc_options_value = 'hypre boomeramg 31'
l_tol = 1.0e-3
l_max_its = 30
nl_max_its = 15
nl_rel_tol = 1.0e-8
nl_abs_tol = 1e-10
end_time = 2.0
dtmax = 0.05
[./TimeStepper]
type = IterationAdaptiveDT
dt = 0.0005
cutback_factor = 0.7
growth_factor = 1.2
[../]
[]
[Adaptivity]
initial_steps = 5
max_h_level = 3
initial_marker = err_eta
marker = err_bnds
[./Markers]
[./err_eta]
type = ErrorFractionMarker
coarsen = 0.3
refine = 0.95
indicator = ind_eta
[../]
[./err_bnds]
type = ErrorFractionMarker
coarsen = 0.3
refine = 0.95
indicator = ind_bnds
[../]
[../]
[./Indicators]
[./ind_eta]
type = GradientJumpIndicator
variable = etaa0
[../]
[./ind_bnds]
type = GradientJumpIndicator
variable = bnds
[../]
[../]
[]
[Outputs]
interval = 5
exodus = true
[]
modules/phase_field/test/tests/MultiSmoothCircleIC/multismoothcircleIC_normal_test.i
[Mesh]
type = GeneratedMesh
dim = 3
nx = 15
ny = 15
nz = 15
xmin = 0
xmax = 100
ymin = 0
ymax = 100
zmin = 0
zmax = 100
elem_type = HEX8
[]
[Variables]
[./c]
order = FIRST
family = LAGRANGE
[../]
[]
[ICs]
[./c]
type = MultiSmoothCircleIC
variable = c
invalue = 1.0
outvalue = 0.0001
bubspac = 30.0 # This spacing is from bubble center to bubble center
numbub = 10
radius = 10.0
int_width = 12.0
rand_seed = 2000
radius_variation = 2 #This is the standard deviation
radius_variation_type = normal
[../]
[]
[Kernels]
[./ie_c]
type = TimeDerivative
variable = c
[../]
[./diff]
type = MatDiffusion
variable = c
diffusivity = D_v
[../]
[]
[BCs]
[./Periodic]
[./all]
auto_direction = 'x y z'
[../]
[../]
[]
[Materials]
[./Dv]
type = GenericConstantMaterial
prop_names = D_v
prop_values = 0.074802
[../]
[]
[Postprocessors]
[./bubbles]
type = FeatureFloodCount
variable = c
execute_on = 'initial timestep_end'
[../]
[]
[Executioner]
type = Transient
scheme = bdf2
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart -mat_mffd_type'
petsc_options_value = 'hypre boomeramg 101 ds'
l_max_its = 20
l_tol = 1e-4
nl_max_its = 20
nl_rel_tol = 1e-9
nl_abs_tol = 1e-11
start_time = 0.0
num_steps = 1
dt = 100.0
[]
[Outputs]
exodus = true
[]
modules/contact/test/tests/bouncing-block-contact/frictionless-nodal-fb-lm-nodal-disp.i
starting_point = 2e-1
offset = 1e-2
[GlobalParams]
displacements = 'disp_x disp_y'
diffusivity = 1e0
scaling = 1e0
[]
[Mesh]
file = long-bottom-block-1elem-blocks.e
[]
[Problem]
kernel_coverage_check = false
[]
[Variables]
[./disp_x]
block = '1 2'
[../]
[./disp_y]
block = '1 2'
[../]
[./normal_lm]
block = 3
[../]
[]
[ICs]
[./disp_y]
block = 2
variable = disp_y
value = ${fparse starting_point + offset}
type = ConstantIC
[../]
[]
[Kernels]
[./disp_x]
type = MatDiffusion
variable = disp_x
[../]
[./disp_y]
type = MatDiffusion
variable = disp_y
[../]
[]
[Constraints]
[./lm]
type = NormalNodalLMMechanicalContact
slave = 10
master = 20
variable = normal_lm
master_variable = disp_x
disp_y = disp_y
ncp_function_type = 'fb'
[../]
[./disp_x]
type = NormalNodalMechanicalContact
slave = 10
master = 20
variable = disp_x
master_variable = disp_x
lambda = normal_lm
component = x
[../]
[./disp_y]
type = NormalNodalMechanicalContact
slave = 10
master = 20
variable = disp_y
master_variable = disp_y
lambda = normal_lm
component = y
[../]
[]
[BCs]
[./botx]
type = DirichletBC
variable = disp_x
preset = false
boundary = 40
value = 0.0
[../]
[./boty]
type = DirichletBC
variable = disp_y
preset = false
boundary = 40
value = 0.0
[../]
[./topy]
type = FunctionDirichletBC
variable = disp_y
preset = false
boundary = 30
function = '${starting_point} * cos(2 * pi / 40 * t) + ${offset}'
[../]
[./leftx]
type = FunctionDirichletBC
variable = disp_x
preset = false
boundary = 50
function = '1e-2 * t'
[../]
[]
[Executioner]
type = Transient
end_time = 200
dt = 5
dtmin = .1
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason -pc_svd_monitor -snes_linesearch_monitor'
petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount -mat_mffd_err'
petsc_options_value = 'lu NONZERO 1e-15 1e-5'
l_max_its = 30
nl_max_its = 20
line_search = 'none'
[]
[Debug]
show_var_residual_norms = true
[]
[Outputs]
exodus = true
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Postprocessors]
active = 'num_nl cumulative contact'
[./num_nl]
type = NumNonlinearIterations
[../]
[./cumulative]
type = CumulativeValuePostprocessor
postprocessor = num_nl
[../]
[contact]
type = ContactDOFSetSize
variable = normal_lm
subdomain = '3'
execute_on = 'nonlinear timestep_end'
[]
[]
modules/xfem/test/tests/moving_interface/verification/2D_xy_homog1mat.i
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #
# XFEM Moving Interface Verification Problem
# Dimensionality: 2D
# Coordinate System: xy
# Material Numbers/Types: homogeneous 1 material, 2 region
# Element Order: 1st
# Interface Characteristics: u independent, prescribed level set function
# Description:
# Transient 2D heat transfer problem in Cartesian coordinates designed with
# the Method of Manufactured Solutions. This problem was developed to verify
# XFEM performance on linear elements in the presence of a moving interface
# sweeping across the x-y coordinates of a system with homogeneous material
# properties. This problem can be exactly evaluated by FEM/Moose without the
# moving interface. Both the temperature and level set function are designed
# to be linear to attempt to minimize error between the Moose/exact solution
# and XFEM results.
# Results:
# The temperature at the bottom left boundary (x=0, y=0) exhibits the largest
# difference between the FEM/Moose solution and XFEM results. We present the
# XFEM results at this location with 10 digits of precision:
# Time Expected Temperature XFEM Calculated Temperature
# 0.2 440 440
# 0.4 480 479.9998791
# 0.6 520 519.9995307
# 0.8 560 559.9989724
# 1.0 600 599.9984541
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #
[GlobalParams]
order = FIRST
family = LAGRANGE
[]
[Mesh]
type = GeneratedMesh
dim = 2
nx = 4
ny = 4
xmin = 0.0
xmax = 1.0
ymin = 0.0
ymax = 1.0
elem_type = QUAD4
[]
[XFEM]
qrule = moment_fitting
output_cut_plane = true
[]
[UserObjects]
[./level_set_cut_uo]
type = LevelSetCutUserObject
level_set_var = ls
heal_always = true
[../]
[]
[Variables]
[./u]
[../]
[]
[AuxVariables]
[./ls]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./heat_cond]
type = MatDiffusion
variable = u
diffusivity = diffusion_coefficient
[../]
[./vol_heat_src]
type = BodyForce
variable = u
function = src_func
[../]
[./mat_time_deriv]
type = TestMatTimeDerivative
variable = u
mat_prop_value = rhoCp
[../]
[]
[AuxKernels]
[./ls_function]
type = FunctionAux
variable = ls
function = ls_func
[../]
[]
[Constraints]
[./xfem_constraints]
type = XFEMSingleVariableConstraint
variable = u
geometric_cut_userobject = 'level_set_cut_uo'
use_penalty = true
alpha = 1e5
[../]
[]
[Functions]
[./src_func]
type = ParsedFunction
value = '10*(-100*x-100*y+200)'
[../]
[./neumann_func]
type = ParsedFunction
value = '1.5*100*t'
[../]
[./dirichlet_right_func]
type = ParsedFunction
value = '(-100*y+100)*t+400'
[../]
[./dirichlet_top_func]
type = ParsedFunction
value = '(-100*x+100)*t+400'
[../]
[./ls_func]
type = ParsedFunction
value = '-0.5*(x+y) + 1.04 - 0.2*t'
[../]
[]
[Materials]
[./mat_time_deriv_prop]
type = GenericConstantMaterial
prop_names = 'rhoCp'
prop_values = 10
[../]
[./therm_cond_prop]
type = GenericConstantMaterial
prop_names = 'diffusion_coefficient'
prop_values = 1.5
[../]
[]
[BCs]
[./left_du]
type = FunctionNeumannBC
variable = u
boundary = 'left'
function = neumann_func
[../]
[./right_u]
type = FunctionDirichletBC
variable = u
boundary = 'right'
function = dirichlet_right_func
[../]
[./bottom_du]
type = FunctionNeumannBC
variable = u
boundary = 'bottom'
function = neumann_func
[../]
[./top_u]
type = FunctionDirichletBC
variable = u
boundary = 'top'
function = dirichlet_top_func
[../]
[]
[ICs]
[./u_ic]
type = ConstantIC
value = 400
variable = u
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
line_search = 'none'
l_tol = 1.0e-6
nl_max_its = 15
nl_rel_tol = 1.0e-10
nl_abs_tol = 1.0e-9
start_time = 0.0
dt = 0.2
end_time = 1.0
max_xfem_update = 1
[]
[Outputs]
interval = 1
execute_on = 'initial timestep_end'
exodus = true
[./console]
type = Console
output_linear = true
[../]
[]
modules/phase_field/test/tests/initial_conditions/SmoothSuperellipsoidIC_3D.i
[Mesh]
type = GeneratedMesh
dim = 3
nx = 15
ny = 15
nz = 15
xmax = 50
ymax = 50
zmax = 50
elem_type = HEX8
[]
[Variables]
[./c]
[../]
[]
[ICs]
[./c]
type = SmoothSuperellipsoidIC
variable = c
x1 = 25.0
y1 = 25.0
z1 = 25.0
a = 8
b = 12
c = 16
n = 3.5
invalue = 1.0
outvalue = 0
int_width = 4.0
[../]
[]
[Kernels]
[./ie_c]
type = TimeDerivative
variable = c
[../]
[./Diffusion]
type = MatDiffusion
variable = c
[../]
[]
[BCs]
[./Periodic]
[./All]
auto_direction = 'x y z'
[../]
[../]
[]
[Materials]
[./Diffusivity]
type = GenericConstantMaterial
prop_names = D
prop_values = 1.0
[../]
[]
[Executioner]
type = Transient
scheme = bdf2
solve_type = 'NEWTON'
petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
petsc_options_value = 'hypre boomeramg 31'
l_max_its = 20
l_tol = 1.0e-5
nl_max_its = 40
nl_rel_tol = 5.0e-14
start_time = 0.0
num_steps = 1
dt = 2.0
[]
[Outputs]
exodus = true
[]
modules/phase_field/test/tests/MultiSmoothCircleIC/specifiedsmoothcircleIC_test.i
[Mesh]
type = GeneratedMesh
dim = 3
nx = 5
ny = 5
nz = 5
xmin = 0
xmax = 100
ymin = 0
ymax = 100
zmin = 0
zmax = 100
elem_type = HEX8
[]
[Variables]
[./c]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./ie_c]
type = TimeDerivative
variable = c
[../]
[./diff]
type = MatDiffusion
variable = c
diffusivity = D_v
[../]
[]
[ICs]
[./c]
type = SpecifiedSmoothCircleIC
variable = c
x_positions = '10 50 90'
y_positions = '30 20 80'
z_positions = '30 50 75'
radii = '21 25 16'
invalue = 1.0
outvalue = 0.0001
int_width = 4
[../]
[]
[BCs]
[./Periodic]
[./all]
auto_direction = 'x y'
[../]
[../]
[]
[Materials]
[./Dv]
type = GenericConstantMaterial
prop_names = D_v
prop_values = 0.074802
[../]
[]
[Postprocessors]
[./bubbles]
type = FeatureFloodCount
variable = c
execute_on = 'initial timestep_end'
[../]
[]
[Executioner]
type = Transient
scheme = bdf2
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart -mat_mffd_type'
petsc_options_value = 'hypre boomeramg 101 ds'
l_max_its = 20
l_tol = 1e-4
nl_max_its = 20
nl_rel_tol = 1e-9
nl_abs_tol = 1e-11
start_time = 0.0
num_steps = 1
dt = 100.0
[]
[Outputs]
exodus = true
[]
modules/phase_field/examples/anisotropic_interfaces/GrandPotentialPlanarGrowth.i
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 10
xmin = -2
xmax = 2
ymin = -2
ymax = 2
uniform_refine = 2
[]
[GlobalParams]
x1 = -2
y1 = -2
x2 = 2
y2 = -1.5
derivative_order = 2
[]
[Variables]
[./w]
[../]
[./etaa0]
[../]
[./etab0]
[../]
[]
[AuxVariables]
[./bnds]
[../]
#Temperature
[./T]
[../]
[]
[AuxKernels]
[./bnds]
type = BndsCalcAux
variable = bnds
v = 'etaa0 etab0'
[../]
[./T]
type = FunctionAux
function = 95.0+2.0*(y-1.0*t)
variable = T
execute_on = 'initial timestep_begin'
[../]
[]
[ICs]
[./w]
type = BoundingBoxIC
variable = w
# note w = A*(c-cleq), A = 1.0, cleq = 0.0 ,i.e., w = c (in the matrix/liquid phase)
outside = -4.0
inside = 0.0
[../]
[./etaa0]
type = BoundingBoxIC
variable = etaa0
#Solid phase
outside = 0.0
inside = 1.0
[../]
[./etab0]
type = BoundingBoxIC
variable = etab0
#Liquid phase
outside = 1.0
inside = 0.0
[../]
[]
[Kernels]
# Order parameter eta_alpha0
[./ACa0_bulk]
type = ACGrGrMulti
variable = etaa0
v = 'etab0'
gamma_names = 'gab'
[../]
[./ACa0_sw]
type = ACSwitching
variable = etaa0
Fj_names = 'omegaa omegab'
hj_names = 'ha hb'
args = 'etab0 w'
[../]
[./ACa0_int1]
type = ACInterface2DMultiPhase1
variable = etaa0
etas = 'etab0'
kappa_name = kappaa
dkappadgrad_etaa_name = dkappadgrad_etaa
d2kappadgrad_etaa_name = d2kappadgrad_etaa
[../]
[./ACa0_int2]
type = ACInterface2DMultiPhase2
variable = etaa0
kappa_name = kappaa
dkappadgrad_etaa_name = dkappadgrad_etaa
[../]
[./ea0_dot]
type = TimeDerivative
variable = etaa0
[../]
# Order parameter eta_beta0
[./ACb0_bulk]
type = ACGrGrMulti
variable = etab0
v = 'etaa0'
gamma_names = 'gab'
[../]
[./ACb0_sw]
type = ACSwitching
variable = etab0
Fj_names = 'omegaa omegab'
hj_names = 'ha hb'
args = 'etaa0 w'
[../]
[./ACb0_int1]
type = ACInterface2DMultiPhase1
variable = etab0
etas = 'etaa0'
kappa_name = kappab
dkappadgrad_etaa_name = dkappadgrad_etab
d2kappadgrad_etaa_name = d2kappadgrad_etab
[../]
[./ACb0_int2]
type = ACInterface2DMultiPhase2
variable = etab0
kappa_name = kappab
dkappadgrad_etaa_name = dkappadgrad_etab
[../]
[./eb0_dot]
type = TimeDerivative
variable = etab0
[../]
#Chemical potential
[./w_dot]
type = SusceptibilityTimeDerivative
variable = w
f_name = chi
[../]
[./Diffusion]
type = MatDiffusion
variable = w
diffusivity = Dchi
[../]
[./coupled_etaa0dot]
type = CoupledSwitchingTimeDerivative
variable = w
v = etaa0
Fj_names = 'rhoa rhob'
hj_names = 'ha hb'
args = 'etaa0 etab0'
[../]
[./coupled_etab0dot]
type = CoupledSwitchingTimeDerivative
variable = w
v = etab0
Fj_names = 'rhoa rhob'
hj_names = 'ha hb'
args = 'etaa0 etab0'
[../]
[]
[Materials]
[./ha]
type = SwitchingFunctionMultiPhaseMaterial
h_name = ha
all_etas = 'etaa0 etab0'
phase_etas = 'etaa0'
[../]
[./hb]
type = SwitchingFunctionMultiPhaseMaterial
h_name = hb
all_etas = 'etaa0 etab0'
phase_etas = 'etab0'
[../]
[./omegaa]
type = DerivativeParsedMaterial
args = 'w'
f_name = omegaa
material_property_names = 'Vm ka caeq'
function = '-0.5*w^2/Vm^2/ka-w/Vm*caeq'
[../]
[./omegab]
type = DerivativeParsedMaterial
args = 'w T'
f_name = omegab
material_property_names = 'Vm kb cbeq S Tm'
function = '-0.5*w^2/Vm^2/kb-w/Vm*cbeq-S*(T-Tm)'
[../]
[./rhoa]
type = DerivativeParsedMaterial
args = 'w'
f_name = rhoa
material_property_names = 'Vm ka caeq'
function = 'w/Vm^2/ka + caeq/Vm'
[../]
[./rhob]
type = DerivativeParsedMaterial
args = 'w'
f_name = rhob
material_property_names = 'Vm kb cbeq'
function = 'w/Vm^2/kb + cbeq/Vm'
[../]
[./kappaa]
type = InterfaceOrientationMultiphaseMaterial
kappa_name = kappaa
dkappadgrad_etaa_name = dkappadgrad_etaa
d2kappadgrad_etaa_name = d2kappadgrad_etaa
etaa = etaa0
etab = etab0
outputs = exodus
output_properties = 'kappaa'
[../]
[./kappab]
type = InterfaceOrientationMultiphaseMaterial
kappa_name = kappab
dkappadgrad_etaa_name = dkappadgrad_etab
d2kappadgrad_etaa_name = d2kappadgrad_etab
etaa = etab0
etab = etaa0
outputs = exodus
output_properties = 'kappab'
[../]
[./const]
type = GenericConstantMaterial
prop_names = 'L D chi Vm ka caeq kb cbeq gab mu S Tm'
prop_values = '1.0 1.0 0.1 1.0 10.0 0.1 10.0 0.9 4.5 10.0 1.0 100.0'
[../]
[./Mobility]
type = ParsedMaterial
f_name = Dchi
material_property_names = 'D chi'
function = 'D*chi'
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
scheme = bdf2
solve_type = PJFNK
petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
petsc_options_value = 'hypre boomeramg 31'
l_tol = 1.0e-3
l_max_its = 30
nl_max_its = 15
nl_rel_tol = 1.0e-8
nl_abs_tol = 1e-8
end_time = 2.0
[./TimeStepper]
type = IterationAdaptiveDT
dt = 0.0005
cutback_factor = 0.7
growth_factor = 1.2
[../]
[]
[Adaptivity]
initial_steps = 3
max_h_level = 3
initial_marker = err_eta
marker = err_bnds
[./Markers]
[./err_eta]
type = ErrorFractionMarker
coarsen = 0.3
refine = 0.95
indicator = ind_eta
[../]
[./err_bnds]
type = ErrorFractionMarker
coarsen = 0.3
refine = 0.95
indicator = ind_bnds
[../]
[../]
[./Indicators]
[./ind_eta]
type = GradientJumpIndicator
variable = etaa0
[../]
[./ind_bnds]
type = GradientJumpIndicator
variable = bnds
[../]
[../]
[]
[Outputs]
interval = 10
exodus = true
[]
modules/phase_field/test/tests/MultiSmoothCircleIC/latticesmoothcircleIC_test.i
[Mesh]
type = GeneratedMesh
dim = 3
nx = 22
ny = 22
nz = 22
xmin = 0
xmax = 100
ymin = 0
ymax = 100
zmin = 0
zmax = 100
elem_type = HEX8
[]
[Variables]
[./c]
order = FIRST
family = LAGRANGE
[../]
[]
[ICs]
[./c]
type = LatticeSmoothCircleIC
variable = c
invalue = 1.0
outvalue = 0.0001
circles_per_side = '3 3 3'
pos_variation = 0.0
radius = 10.0
int_width = 12.0
radius_variation = 0.2
radius_variation_type = uniform
[../]
[]
[Kernels]
active = 'ie_c diff'
[./ie_c]
type = TimeDerivative
variable = c
[../]
[./diff]
type = MatDiffusion
variable = c
diffusivity = D_v
[../]
[]
[BCs]
[]
[Materials]
active = 'Dv'
[./Dv]
type = GenericConstantMaterial
prop_names = D_v
prop_values = 0.074802
[../]
[]
[Postprocessors]
active = 'bubbles'
[./bubbles]
type = FeatureFloodCount
variable = c
execute_on = 'initial timestep_end'
flood_entity_type = NODAL
[../]
[]
[Executioner]
type = Transient
scheme = 'bdf2'
#Preconditioned JFNK (default)
solve_type = 'PJFNK'
petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart -mat_mffd_type'
petsc_options_value = 'hypre boomeramg 101 ds'
l_max_its = 20
l_tol = 1e-4
nl_max_its = 20
nl_rel_tol = 1e-9
nl_abs_tol = 1e-11
start_time = 0.0
num_steps =1
dt = 100.0
[]
[Outputs]
exodus = true
[]
test/tests/materials/interface_material/interface_value_material_noIK.i
[Mesh]
[gen]
type = GeneratedMeshGenerator
dim = 2
nx = 2
xmax = 2
ny = 2
ymax = 2
elem_type = QUAD4
[]
[./subdomain_id]
input = gen
type = SubdomainBoundingBoxGenerator
bottom_left = '1 0 0'
top_right = '2 2 0'
block_id = 1
[../]
[./interface]
type = SideSetsBetweenSubdomainsGenerator
input = subdomain_id
master_block = '0'
paired_block = '1'
new_boundary = 'interface'
[../]
[]
[Variables]
[./u]
block = 0
[../]
[./v]
block = 1
[../]
[]
[Kernels]
[./diff]
type = MatDiffusion
variable = u
diffusivity = 'diffusivity'
block = 0
[../]
[./diff_v]
type = MatDiffusion
variable = v
diffusivity = 'diffusivity'
block = 1
[../]
[]
[BCs]
[u_left]
type = DirichletBC
boundary = 'left'
variable = u
value = 1
[]
[v_right]
type = DirichletBC
boundary = 'right'
variable = v
value = 0
[]
[]
[Materials]
[./stateful1]
type = StatefulMaterial
block = 0
initial_diffusivity = 1
# outputs = all
[../]
[./stateful2]
type = StatefulMaterial
block = 1
initial_diffusivity = 2
# outputs = all
[../]
[./interface_material_avg]
type = InterfaceValueMaterial
mat_prop_master = diffusivity
mat_prop_slave = diffusivity
var_master = diffusivity_var
var_slave = diffusivity_var
mat_prop_out_basename = diff
boundary = interface
interface_value_type = average
mat_prop_var_out_basename = diff_var
nl_var_master = u
nl_var_slave = v
[../]
[./interface_material_jump_master_minus_slave]
type = InterfaceValueMaterial
mat_prop_master = diffusivity
mat_prop_slave = diffusivity
var_master = diffusivity_var
var_slave = diffusivity_var
mat_prop_out_basename = diff
boundary = interface
interface_value_type = jump_master_minus_slave
mat_prop_var_out_basename = diff_var
nl_var_master = u
nl_var_slave = v
[../]
[./interface_material_jump_slave_minus_master]
type = InterfaceValueMaterial
mat_prop_master = diffusivity
mat_prop_slave = diffusivity
var_master = diffusivity_var
var_slave = diffusivity_var
mat_prop_out_basename = diff
boundary = interface
interface_value_type = jump_slave_minus_master
mat_prop_var_out_basename = diff_var
nl_var_master = u
nl_var_slave = v
[../]
[./interface_material_jump_abs]
type = InterfaceValueMaterial
mat_prop_master = diffusivity
mat_prop_slave = diffusivity
var_master = diffusivity_var
var_slave = diffusivity_var
mat_prop_out_basename = diff
boundary = interface
interface_value_type = jump_abs
mat_prop_var_out_basename = diff_var
nl_var_master = u
nl_var_slave = v
[../]
[./interface_material_master]
type = InterfaceValueMaterial
mat_prop_master = diffusivity
mat_prop_slave = diffusivity
var_master = diffusivity_var
var_slave = diffusivity_var
mat_prop_out_basename = diff
boundary = interface
interface_value_type = master
mat_prop_var_out_basename = diff_var
nl_var_master = u
nl_var_slave = v
[../]
[./interface_material_slave]
type = InterfaceValueMaterial
mat_prop_master = diffusivity
mat_prop_slave = diffusivity
var_master = diffusivity_var
var_slave = diffusivity_var
mat_prop_out_basename = diff
mat_prop_var_out_basename = diff_var
boundary = interface
interface_value_type = slave
nl_var_master = u
nl_var_slave = v
[../]
[]
[AuxKernels]
[./interface_material_avg]
type = MaterialRealAux
property = diff_average
variable = diffusivity_average
boundary = interface
[]
[./interface_material_jump_master_minus_slave]
type = MaterialRealAux
property = diff_jump_master_minus_slave
variable = diffusivity_jump_master_minus_slave
boundary = interface
[]
[./interface_material_jump_slave_minus_master]
type = MaterialRealAux
property = diff_jump_slave_minus_master
variable = diffusivity_jump_slave_minus_master
boundary = interface
[]
[./interface_material_jump_abs]
type = MaterialRealAux
property = diff_jump_abs
variable = diffusivity_jump_abs
boundary = interface
[]
[./interface_material_master]
type = MaterialRealAux
property = diff_master
variable = diffusivity_master
boundary = interface
[]
[./interface_material_slave]
type = MaterialRealAux
property = diff_slave
variable = diffusivity_slave
boundary = interface
[]
[diffusivity_var]
type = MaterialRealAux
property = diffusivity
variable = diffusivity_var
[]
[]
[AuxVariables]
[diffusivity_var]
family = MONOMIAL
order = CONSTANT
[]
[./diffusivity_average]
family = MONOMIAL
order = CONSTANT
[]
[./diffusivity_jump_master_minus_slave]
family = MONOMIAL
order = CONSTANT
[]
[./diffusivity_jump_slave_minus_master]
family = MONOMIAL
order = CONSTANT
[]
[./diffusivity_jump_abs]
family = MONOMIAL
order = CONSTANT
[]
[./diffusivity_master]
family = MONOMIAL
order = CONSTANT
[]
[./diffusivity_slave]
family = MONOMIAL
order = CONSTANT
[]
[]
[Executioner]
type = Steady
solve_type = NEWTON
[]
[Outputs]
exodus = true
[]
modules/phase_field/test/tests/initial_conditions/SmoothCircleIC_3D.i
[Mesh]
type = GeneratedMesh
dim = 3
nx = 15
ny = 15
nz = 15
xmax = 50
ymax = 50
zmax = 50
elem_type = HEX8
[]
[Variables]
[./c]
[../]
[]
[ICs]
[./c]
type = SmoothCircleIC
variable = c
x1 = 25.0
y1 = 25.0
radius = 12
invalue = 1.0
outvalue = 0
int_width = 12
3D_spheres = false
z1 = 25
[../]
[]
[Kernels]
[./ie_c]
type = TimeDerivative
variable = c
[../]
[./Diffusion]
type = MatDiffusion
variable = c
[../]
[]
[BCs]
[./Periodic]
[./All]
auto_direction = 'x y z'
[../]
[../]
[]
[Materials]
[./Diffusivity]
type = GenericConstantMaterial
prop_names = D
prop_values = 1.0
[../]
[]
[Executioner]
type = Transient
scheme = bdf2
solve_type = 'NEWTON'
petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
petsc_options_value = 'hypre boomeramg 31'
l_max_its = 20
l_tol = 1.0e-5
nl_max_its = 40
nl_rel_tol = 5.0e-14
start_time = 0.0
num_steps = 1
dt = 2.0
[]
[Outputs]
exodus = true
[]
test/tests/materials/interface_material/interface_value_material.i
[Mesh]
[gen]
type = GeneratedMeshGenerator
dim = 2
nx = 2
xmax = 2
ny = 2
ymax = 2
elem_type = QUAD4
[]
[./subdomain_id]
input = gen
type = SubdomainBoundingBoxGenerator
bottom_left = '1 0 0'
top_right = '2 2 0'
block_id = 1
[../]
[./interface]
type = SideSetsBetweenSubdomainsGenerator
input = subdomain_id
master_block = '0'
paired_block = '1'
new_boundary = 'interface'
[../]
[]
[Variables]
[./u]
block = 0
[../]
[./v]
block = 1
[../]
[]
[Kernels]
[./diff]
type = MatDiffusion
variable = u
diffusivity = 'diffusivity'
block = 0
[../]
[./diff_v]
type = MatDiffusion
variable = v
diffusivity = 'diffusivity'
block = 1
[../]
[]
[InterfaceKernels]
[tied]
type = PenaltyInterfaceDiffusion
variable = u
neighbor_var = v
jump_prop_name = "average_jump"
penalty = 1e6
boundary = 'interface'
[]
[]
[BCs]
[u_left]
type = DirichletBC
boundary = 'left'
variable = u
value = 1
[]
[v_right]
type = DirichletBC
boundary = 'right'
variable = v
value = 0
[]
[]
[Materials]
[./stateful1]
type = StatefulMaterial
block = 0
initial_diffusivity = 1
# outputs = all
[../]
[./stateful2]
type = StatefulMaterial
block = 1
initial_diffusivity = 2
# outputs = all
[../]
[./interface_material_avg]
type = InterfaceValueMaterial
mat_prop_master = diffusivity
mat_prop_slave = diffusivity
var_master = diffusivity_var
var_slave = diffusivity_var
mat_prop_out_basename = diff
boundary = interface
interface_value_type = average
mat_prop_var_out_basename = diff_var
nl_var_master = u
nl_var_slave = v
[../]
[./interface_material_jump_master_minus_slave]
type = InterfaceValueMaterial
mat_prop_master = diffusivity
mat_prop_slave = diffusivity
var_master = diffusivity_var
var_slave = diffusivity_var
mat_prop_out_basename = diff
boundary = interface
interface_value_type = jump_master_minus_slave
mat_prop_var_out_basename = diff_var
nl_var_master = u
nl_var_slave = v
[../]
[./interface_material_jump_slave_minus_master]
type = InterfaceValueMaterial
mat_prop_master = diffusivity
mat_prop_slave = diffusivity
var_master = diffusivity_var
var_slave = diffusivity_var
mat_prop_out_basename = diff
boundary = interface
interface_value_type = jump_slave_minus_master
mat_prop_var_out_basename = diff_var
nl_var_master = u
nl_var_slave = v
[../]
[./interface_material_jump_abs]
type = InterfaceValueMaterial
mat_prop_master = diffusivity
mat_prop_slave = diffusivity
var_master = diffusivity_var
var_slave = diffusivity_var
mat_prop_out_basename = diff
boundary = interface
interface_value_type = jump_abs
mat_prop_var_out_basename = diff_var
nl_var_master = u
nl_var_slave = v
[../]
[./interface_material_master]
type = InterfaceValueMaterial
mat_prop_master = diffusivity
mat_prop_slave = diffusivity
var_master = diffusivity_var
var_slave = diffusivity_var
mat_prop_out_basename = diff
boundary = interface
interface_value_type = master
mat_prop_var_out_basename = diff_var
nl_var_master = u
nl_var_slave = v
[../]
[./interface_material_slave]
type = InterfaceValueMaterial
mat_prop_master = diffusivity
mat_prop_slave = diffusivity
var_master = diffusivity_var
var_slave = diffusivity_var
mat_prop_out_basename = diff
mat_prop_var_out_basename = diff_var
boundary = interface
interface_value_type = slave
nl_var_master = u
nl_var_slave = v
[../]
[]
[AuxKernels]
[./interface_material_avg]
type = MaterialRealAux
property = diff_average
variable = diffusivity_average
boundary = interface
[]
[./interface_material_jump_master_minus_slave]
type = MaterialRealAux
property = diff_jump_master_minus_slave
variable = diffusivity_jump_master_minus_slave
boundary = interface
[]
[./interface_material_jump_slave_minus_master]
type = MaterialRealAux
property = diff_jump_slave_minus_master
variable = diffusivity_jump_slave_minus_master
boundary = interface
[]
[./interface_material_jump_abs]
type = MaterialRealAux
property = diff_jump_abs
variable = diffusivity_jump_abs
boundary = interface
[]
[./interface_material_master]
type = MaterialRealAux
property = diff_master
variable = diffusivity_master
boundary = interface
[]
[./interface_material_slave]
type = MaterialRealAux
property = diff_slave
variable = diffusivity_slave
boundary = interface
[]
[diffusivity_var]
type = MaterialRealAux
property = diffusivity
variable = diffusivity_var
[]
[]
[AuxVariables]
[diffusivity_var]
family = MONOMIAL
order = CONSTANT
[]
[./diffusivity_average]
family = MONOMIAL
order = CONSTANT
[]
[./diffusivity_jump_master_minus_slave]
family = MONOMIAL
order = CONSTANT
[]
[./diffusivity_jump_slave_minus_master]
family = MONOMIAL
order = CONSTANT
[]
[./diffusivity_jump_abs]
family = MONOMIAL
order = CONSTANT
[]
[./diffusivity_master]
family = MONOMIAL
order = CONSTANT
[]
[./diffusivity_slave]
family = MONOMIAL
order = CONSTANT
[]
[]
[Executioner]
type = Steady
solve_type = NEWTON
[]
[Outputs]
exodus = true
[]
modules/contact/test/tests/bouncing-block-contact/bouncing-block-ranfs.i
starting_point = 2e-1
offset = 1e-2
[GlobalParams]
displacements = 'disp_x disp_y'
diffusivity = 1e0
[]
[Mesh]
file = long-bottom-block-no-lower-d.e
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[]
[ICs]
[./disp_y]
block = 2
variable = disp_y
value = ${fparse starting_point + offset}
type = ConstantIC
[../]
[]
[Kernels]
[./disp_x]
type = MatDiffusion
variable = disp_x
[../]
[./disp_y]
type = MatDiffusion
variable = disp_y
[../]
[]
[Constraints]
[./disp_x]
type = RANFSNormalMechanicalContact
slave = 10
master = 20
variable = disp_x
master_variable = disp_x
component = x
[../]
[./disp_y]
type = RANFSNormalMechanicalContact
slave = 10
master = 20
variable = disp_y
master_variable = disp_y
component = y
[../]
[]
[BCs]
[./botx]
type = DirichletBC
variable = disp_x
boundary = 40
value = 0.0
[../]
[./boty]
type = DirichletBC
variable = disp_y
boundary = 40
value = 0.0
[../]
[./topy]
type = FunctionDirichletBC
variable = disp_y
boundary = 30
function = '${starting_point} * cos(2 * pi / 40 * t) + ${offset}'
[../]
[./leftx]
type = FunctionDirichletBC
variable = disp_x
boundary = 50
function = '1e-2 * t'
[../]
[]
[Executioner]
type = Transient
end_time = 200
dt = 5
dtmin = 5
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type -pc_hypre_type -mat_mffd_err'
petsc_options_value = 'hypre boomeramg 1e-5'
l_max_its = 30
nl_max_its = 20
line_search = 'none'
[]
[Debug]
show_var_residual_norms = true
[]
[Outputs]
[exo]
type = Exodus
[]
checkpoint = true
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Postprocessors]
[./num_nl]
type = NumNonlinearIterations
[../]
[./cumulative]
type = CumulativeValuePostprocessor
postprocessor = num_nl
[../]
[]
test/tests/kernels/2d_diffusion/matdiffusion.i
[Mesh]
type = GeneratedMesh
dim = 2
nx = 2
ny = 2
xmax = 1.0
ymax = 1.0
elem_type = QUAD4
[]
[Variables]
[./u]
[../]
[]
[Kernels]
[./cres]
type = MatDiffusion
variable = u
diffusivity = Du
[../]
[./ctime]
type = TimeDerivative
variable = u
[../]
[]
[Materials]
[./Dc]
type = DerivativeParsedMaterial
f_name = Du
function = '0.01+u^2'
args = 'u'
derivative_order = 1
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = u
boundary = 1
value = 0
[../]
[./right]
type = NeumannBC
variable = u
boundary = 2
value = 1
[../]
[]
[Executioner]
type = Transient
solve_type = 'NEWTON'
scheme = 'BDF2'
dt = 1
num_steps = 2
[]
[Outputs]
exodus = true
[]
modules/contact/test/tests/bouncing-block-contact/frictional-nodal-min-normal-lm-mortar-fb-tangential-lm-mortar-action.i
starting_point = 2e-1
# We offset slightly so we avoid the case where the bottom of the slave block and the top of the
# master block are perfectly vertically aligned which can cause the backtracking line search some
# issues for a coarse mesh (basic line search handles that fine)
offset = 1e-2
[GlobalParams]
displacements = 'disp_x disp_y'
diffusivity = 1e0
scaling = 1e0
[]
[Mesh]
[./original_file_mesh]
type = FileMeshGenerator
file = long-bottom-block-1elem-blocks-coarse.e
[../]
# These sidesets need to be deleted because the contact action adds them automatically. For this
# particular mesh, the new IDs will be identical to the deleted ones and will conflict if we don't
# remove the original ones.
[./delete_3]
type = BlockDeletionGenerator
input = original_file_mesh
block_id = 3
[../]
[./revised_file_mesh]
type = BlockDeletionGenerator
input = delete_3
block_id = 4
[../]
[]
[Variables]
[./disp_x]
block = '1 2'
# order = SECOND
[../]
[./disp_y]
block = '1 2'
# order = SECOND
[../]
[]
[Contact]
[frictional]
mesh = revised_file_mesh
master = 20
slave = 10
formulation = mortar
system = constraint
model = coulomb
friction_coefficient = 0.1
[]
[]
[ICs]
[./disp_y]
block = 2
variable = disp_y
value = ${fparse starting_point + offset}
type = ConstantIC
[../]
[]
[Kernels]
[./disp_x]
type = MatDiffusion
variable = disp_x
[../]
[./disp_y]
type = MatDiffusion
variable = disp_y
[../]
[]
[BCs]
[./botx]
type = DirichletBC
variable = disp_x
boundary = 40
value = 0.0
[../]
[./boty]
type = DirichletBC
variable = disp_y
boundary = 40
value = 0.0
[../]
[./topy]
type = FunctionDirichletBC
variable = disp_y
boundary = 30
function = '${starting_point} * cos(2 * pi / 40 * t) + ${offset}'
[../]
[./leftx]
type = FunctionDirichletBC
variable = disp_x
boundary = 50
function = '1e-2 * t'
[../]
[]
[Executioner]
type = Transient
end_time = 200
dt = 5
dtmin = .1
solve_type = 'PJFNK'
petsc_options = '-snes_converged_reason -ksp_converged_reason -pc_svd_monitor -snes_linesearch_monitor -snes_ksp_ew'
petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount -mat_mffd_err'
petsc_options_value = 'lu NONZERO 1e-15 1e-5'
l_max_its = 30
nl_max_its = 20
line_search = 'none'
[]
[Debug]
show_var_residual_norms = true
[]
[Outputs]
exodus = true
hide = 'contact_pressure nodal_area_frictional penetration'
[]
[Preconditioning]
[./smp]
type = SMP
full = true
[../]
[]
[Postprocessors]
[./num_nl]
type = NumNonlinearIterations
[../]
[./cumulative]
type = CumulativeValuePostprocessor
postprocessor = num_nl
[../]
[contact]
type = ContactDOFSetSize
variable = frictional_normal_lm
subdomain = frictional_slave_subdomain
execute_on = 'nonlinear timestep_end'
[]
[]
modules/combined/test/tests/exception/nonad.i
[GlobalParams]
order = SECOND
displacements = 'disp_x disp_y'
[]
[Problem]
coord_type = RZ
[]
[Mesh]
patch_update_strategy = iteration
[./gen]
type = FileMeshGenerator
file = mesh.e
[../]
[]
[Variables]
[./disp_x]
[../]
[./disp_y]
[../]
[./temp]
initial_condition = 501
[../]
[]
[AuxVariables]
[./density_aux]
order = CONSTANT
family = MONOMIAL
[../]
[]
[Modules/TensorMechanics/Master]
[./finite]
strain = FINITE
[../]
[]
[Kernels]
[./gravity]
type = Gravity
variable = disp_y
value = -9.81
[../]
[./heat]
type = MatDiffusion
variable = temp
diffusivity = 1
[../]
[./heat_ie]
type = TimeDerivative
variable = temp
[../]
[]
[AuxKernels]
[./conductance]
type = MaterialRealAux
property = density
variable = density_aux
boundary = inner_surface
[../]
[]
[ThermalContact]
[./thermal_contact]
type = GapHeatTransfer
variable = temp
master = outer_interior
slave = inner_surface
quadrature = true
[../]
[]
[BCs]
[./no_x]
type = DirichletBC
variable = disp_x
boundary = 'centerline'
value = 0.0
[../]
[./no_y]
type = DirichletBC
variable = disp_y
boundary = 'centerline outer_exterior'
value = 0.0
[../]
[./temp]
type = FunctionDirichletBC
boundary = outer_exterior
variable = temp
function = '500 + t'
[../]
[]
[Materials]
[./density]
type = GenericConstantMaterial
prop_names = 'density'
prop_values = '1'
[../]
[./elasticity_tensor]
type = ComputeIsotropicElasticityTensor
youngs_modulus = 1e11
poissons_ratio = 0.3
[../]
[./inner_elastic_stress]
type = ComputeMultipleInelasticStress
inelastic_models = 'inner_creep'
block = inner
outputs = all
[../]
[./inner_creep]
type = PowerLawCreepExceptionTest
coefficient = 10e-22
n_exponent = 2
activation_energy = 0
block = inner
[../]
[./outer_stressstress]
type = ComputeFiniteStrainElasticStress
block = outer
[../]
[]
[Executioner]
type = Transient
petsc_options = ' -snes_converged_reason -ksp_converged_reason'
petsc_options_iname = '-pc_type'
petsc_options_value = 'lu'
line_search = none
nl_abs_tol = 1e-7
l_max_its = 20
num_steps = 1
dt = 1
dtmin = .1
[]
[Outputs]
exodus = true
[]
modules/xfem/test/tests/moving_interface/verification/1D_xy_homog1mat.i
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #
# XFEM Moving Interface Verification Problem
# Dimensionality: quasi-1D
# Coordinate System: xy
# Material Numbers/Types: homogeneous 1 material, 2 region
# Element Order: 1st
# Interface Characteristics: u independent, prescribed linear level set function
# Description:
# A simple transient heat transfer problem in Cartesian coordinates designed
# with the Method of Manufactured Solutions. This problem was developed to
# verify XFEM performance in the presence of a moving interface for linear
# element models that can be exactly evaluated by FEM/Moose. Both the
# temperature solution and level set function are designed to be linear to
# attempt to minimize error between the Moose/exact solution and XFEM results.
# Thermal conductivity is a single, constant value at all points in the system.
# Results:
# The temperature at the left boundary (x=0) exhibits the largest difference
# between the FEM/Moose solution and XFEM results. We present the XFEM results
# at this location with 10 digits of precision:
# Time Expected Temperature XFEM Calculated Temperature
# 0.2 440 440
# 0.4 480 480.0000064
# 0.6 520 520.0000323
# 0.8 560 560.0000896
# 1.0 600 600.0001870
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #
[GlobalParams]
order = FIRST
family = LAGRANGE
[]
[Mesh]
type = GeneratedMesh
dim = 2
nx = 4
ny = 1
xmin = 0.0
xmax = 1.0
ymin = 0.0
ymax = 0.5
elem_type = QUAD4
[]
[XFEM]
qrule = moment_fitting
output_cut_plane = true
[]
[UserObjects]
[./level_set_cut_uo]
type = LevelSetCutUserObject
level_set_var = ls
heal_always = true
[../]
[]
[Variables]
[./u]
[../]
[]
[AuxVariables]
[./ls]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./heat_cond]
type = MatDiffusion
variable = u
diffusivity = diffusion_coefficient
[../]
[./vol_heat_src]
type = BodyForce
variable = u
function = src_func
[../]
[./mat_time_deriv]
type = TestMatTimeDerivative
variable = u
mat_prop_value = rhoCp
[../]
[]
[AuxKernels]
[./ls_function]
type = FunctionAux
variable = ls
function = ls_func
[../]
[]
[Constraints]
[./xfem_constraint]
type = XFEMSingleVariableConstraint
variable = u
geometric_cut_userobject = 'level_set_cut_uo'
use_penalty = true
alpha = 1e5
[../]
[]
[Functions]
[./src_func]
type = ParsedFunction
value = '10*(-200*x+200)'
[../]
[./ls_func]
type = ParsedFunction
value = '1-(x-0.04)-0.2*t'
[../]
[./neumann_func]
type = ParsedFunction
value = '1.5*200*t'
[../]
[]
[Materials]
[./mat_time_deriv_prop]
type = GenericConstantMaterial
prop_names = 'rhoCp'
prop_values = 10
[../]
[./therm_cond_prop]
type = GenericConstantMaterial
prop_names = 'diffusion_coefficient'
prop_values = 1.5
[../]
[]
[BCs]
[./left_du]
type = FunctionNeumannBC
variable = u
boundary = 'left'
function = neumann_func
[../]
[./right_u]
type = DirichletBC
variable = u
boundary = 'right'
value = 400
[../]
[]
[ICs]
[./u_ic]
type = ConstantIC
value = 400
variable = u
[../]
[]
[Executioner]
type = Transient
solve_type = 'PJFNK'
line_search = 'none'
l_tol = 1.0e-6
nl_max_its = 15
nl_rel_tol = 1.0e-10
nl_abs_tol = 1.0e-9
start_time = 0.0
dt = 0.2
end_time = 1.0
max_xfem_update = 1
[]
[Outputs]
interval = 1
execute_on = 'initial timestep_end'
exodus = true
[./console]
type = Console
output_linear = true
[../]
[]
modules/heat_conduction/test/tests/sideset_heat_transfer/cfem_gap.i
[Mesh]
# Build 2-by-2 mesh
[mesh]
type = GeneratedMeshGenerator
dim = 2
nx = 2
xmax = 2
ny = 2
ymax = 2
[]
# Create blocs 0, 1, 2, 3
[block_1]
type = SubdomainBoundingBoxGenerator
input = mesh
block_id = 1
bottom_left = '1 0 0'
top_right = '2 1 0'
[]
[block_2]
type = SubdomainBoundingBoxGenerator
input = block_1
block_id = 2
bottom_left = '0 1 0'
top_right = '1 2 0'
[]
[block_3]
type = SubdomainBoundingBoxGenerator
input = block_2
block_id = 3
bottom_left = '1 1 0'
top_right = '2 2 0'
[]
# Create inner sidesets
[interface_01]
type = SideSetsBetweenSubdomainsGenerator
input = block_3
master_block = 0
paired_block = 1
new_boundary = 'interface_01'
[]
[interface_13]
type = SideSetsBetweenSubdomainsGenerator
input = interface_01
master_block = 1
paired_block = 3
new_boundary = 'interface_13'
[]
[interface_32]
type = SideSetsBetweenSubdomainsGenerator
input = interface_13
master_block = 3
paired_block = 2
new_boundary = 'interface_32'
[]
[interface_20]
type = SideSetsBetweenSubdomainsGenerator
input = interface_32
master_block = 2
paired_block = 0
new_boundary = 'interface_20'
[]
# Create outer boundaries
[boundary_left_0]
type = SideSetsAroundSubdomainGenerator
input = interface_20
block = 0
normal = '-1 0 0'
new_boundary = 'left_0'
[]
[boundary_bot_0]
type = SideSetsAroundSubdomainGenerator
input = boundary_left_0
block = 0
normal = '0 -1 0'
new_boundary = 'bot_0'
[]
[boundary_bot_1]
type = SideSetsAroundSubdomainGenerator
input = boundary_bot_0
block = 1
normal = '0 -1 0'
new_boundary = 'bot_1'
[]
[boundary_right_1]
type = SideSetsAroundSubdomainGenerator
input = boundary_bot_1
block = 1
normal = '1 0 0'
new_boundary = 'right_1'
[]
[boundary_right_3]
type = SideSetsAroundSubdomainGenerator
input = boundary_right_1
block = 3
normal = '1 0 0'
new_boundary = 'right_3'
[]
[boundary_top_3]
type = SideSetsAroundSubdomainGenerator
input = boundary_right_3
block = 3
normal = '0 1 0'
new_boundary = 'top_3'
[]
[boundary_top_2]
type = SideSetsAroundSubdomainGenerator
input = boundary_top_3
block = 2
normal = '0 1 0'
new_boundary = 'top_2'
[]
[boundary_left_2]
type = SideSetsAroundSubdomainGenerator
input = boundary_top_2
block = 2
normal = '-1 0 0'
new_boundary = 'left_2'
[]
uniform_refine = 4
[]
[Variables]
# Need to have variable for each block to allow discontinuity
[T0]
block = 0
[]
[T1]
block = 1
[]
[T2]
block = 2
[]
[T3]
block = 3
[]
[]
[Kernels]
# Diffusion kernel for each block's variable
[diff_0]
type = MatDiffusion
variable = T0
diffusivity = conductivity
block = 0
[]
[diff_1]
type = MatDiffusion
variable = T1
diffusivity = conductivity
block = 1
[]
[diff_2]
type = MatDiffusion
variable = T2
diffusivity = conductivity
block = 2
[]
[diff_3]
type = MatDiffusion
variable = T3
diffusivity = conductivity
block = 3
[]
# Source for two of the blocks
[source_0]
type = BodyForce
variable = T0
value = 5e5
block = '0'
[]
[source_3]
type = BodyForce
variable = T3
value = 5e5
block = '3'
[]
[]
[InterfaceKernels]
# Side set kernel to represent heat transfer across blocks
# Automatically uses the materials defined in SideSetHeatTransferMaterial
[gap_01]
type = SideSetHeatTransferKernel
# This variable defined on a given block must match the master_block given when the side set was generated
variable = T0
# This variable defined on a given block must match the paired_block given when the side set was generated
neighbor_var = T1
boundary = 'interface_01'
[]
[gap_13]
type = SideSetHeatTransferKernel
variable = T1
neighbor_var = T3
boundary = 'interface_13'
[]
[gap_32]
type = SideSetHeatTransferKernel
variable = T3
neighbor_var = T2
boundary = 'interface_32'
[]
[gap_20]
type = SideSetHeatTransferKernel
variable = T2
neighbor_var = T0
boundary = 'interface_20'
[]
[]
# Creating auxiliary variable to combine block restricted solutions
# Ignores discontinuity though
[AuxVariables]
[T]
[]
[]
[AuxKernels]
[temp_0]
type = NormalizationAux
variable = T
source_variable = T0
block = 0
[]
[temp_1]
type = NormalizationAux
variable = T
source_variable = T1
block = 1
[]
[temp_2]
type = NormalizationAux
variable = T
source_variable = T2
block = 2
[]
[temp_3]
type = NormalizationAux
variable = T
source_variable = T3
block = 3
[]
[]
[BCs]
# Boundary condition for each block's outer surface
[bc_left_2]
type = DirichletBC
boundary = 'left_2'
variable = T2
value = 300.0
[]
[bc_left_0]
type = DirichletBC
boundary = 'left_0'
variable = T0
value = 300.0
[]
[bc_bot_0]
type = DirichletBC
boundary = 'bot_0'
variable = T0
value = 300.0
[]
[bc_bot_1]
type = DirichletBC
boundary = 'bot_1'
variable = T1
value = 300.0
[]
[./bc_top_2]
type = ConvectiveFluxFunction # (Robin BC)
variable = T2
boundary = 'top_2'
coefficient = 1e3 # W/K/m^2
T_infinity = 600.0
[../]
[./bc_top_3]
type = ConvectiveFluxFunction # (Robin BC)
variable = T3
boundary = 'top_3'
coefficient = 1e3 # W/K/m^2
T_infinity = 600.0
[../]
[./bc_right_3]
type = ConvectiveFluxFunction # (Robin BC)
variable = T3
boundary = 'right_3'
coefficient = 1e3 # W/K/m^2
T_infinity = 600.0
[../]
[./bc_right_1]
type = ConvectiveFluxFunction # (Robin BC)
variable = T1
boundary = 'right_1'
coefficient = 1e3 # W/K/m^2
T_infinity = 600.0
[../]
[]
[Materials]
[fuel]
type = GenericConstantMaterial
prop_names = 'conductivity'
prop_values = 75
block = '0 3'
[]
[mod]
type = GenericConstantMaterial
prop_names = 'conductivity'
prop_values = 7.5
block = '1 2'
[]
# Interface material used for SideSetHeatTransferKernel
# Heat transfer meachnisms ignored if certain properties are not supplied
[gap_mat]
type = SideSetHeatTransferMaterial
boundary = 'interface_01 interface_13 interface_32 interface_20'
conductivity = 0.41
gap_length = 0.002
Tbulk = 750
h_master = 3000
h_neighbor = 3000
emissivity_master = 0.85
emissivity_neighbor = 0.85
[]
[]
[Executioner]
type = Steady
nl_rel_tol = 1e-12
l_tol = 1e-8
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package -ksp_gmres_restart'
petsc_options_value = 'lu superlu_dist 50'
[]
[Outputs]
exodus = true
[]
modules/phase_field/test/tests/mobility_derivative/matdiffusion.i
[Mesh]
type = GeneratedMesh
dim = 2
nx = 15
ny = 15
xmax = 15.0
ymax = 15.0
elem_type = QUAD4
[]
[Variables]
[./c]
[./InitialCondition]
type = CrossIC
x1 = 0.0
x2 = 30.0
y1 = 0.0
y2 = 30.0
[../]
[../]
[./d]
[./InitialCondition]
type = SmoothCircleIC
x1 = 15
y1 = 15
radius = 8
int_width = 3
invalue = 2
outvalue = 0
[../]
[../]
[]
[Kernels]
[./cres]
type = MatDiffusion
variable = c
diffusivity = Dc
args = d
[../]
[./ctime]
type = TimeDerivative
variable = c
[../]
[./dres]
type = MatDiffusion
variable = d
diffusivity = Dd
args = c
[../]
[./dtime]
type = TimeDerivative
variable = d
[../]
[]
[Materials]
[./Dc]
type = DerivativeParsedMaterial
f_name = Dc
function = '0.01+c^2+d'
args = 'c d'
derivative_order = 1
[../]
[./Dd]
type = DerivativeParsedMaterial
f_name = Dd
function = 'd^2+c+1.5'
args = 'c d'
derivative_order = 1
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
scheme = 'BDF2'
solve_type = 'NEWTON'
petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_pc_type -pc_asm_overlap'
petsc_options_value = 'asm 31 lu 1'
dt = 1
num_steps = 2
[]
[Outputs]
exodus = true
[]
modules/phase_field/test/tests/GrandPotentialPFM/GrandPotentialAnisotropyAntitrap.i
[Mesh]
type = GeneratedMesh
dim = 2
nx = 15
ny = 15
xmin = -2
xmax = 2
ymin = -2
ymax = 2
[]
[GlobalParams]
radius = 1.0
int_width = 0.8
x1 = 0
y1 = 0
enable_jit = true
derivative_order = 2
[]
[Variables]
[./w]
[../]
[./etaa0]
[../]
[./etab0]
[../]
[]
[AuxVariables]
[./bnds]
[../]
[]
[AuxKernels]
[./bnds]
type = BndsCalcAux
variable = bnds
v = 'etaa0 etab0'
[../]
[]
[ICs]
[./w]
type = SmoothCircleIC
variable = w
outvalue = -4.0
invalue = 0.0
[../]
[./etaa0]
type = SmoothCircleIC
variable = etaa0
#Solid phase
outvalue = 0.0
invalue = 1.0
[../]
[./etab0]
type = SmoothCircleIC
variable = etab0
#Liquid phase
outvalue = 1.0
invalue = 0.0
[../]
[]
[Kernels]
# Order parameter eta_alpha0
[./ACa0_bulk]
type = ACGrGrMulti
variable = etaa0
v = 'etab0'
gamma_names = 'gab'
[../]
[./ACa0_sw]
type = ACSwitching
variable = etaa0
Fj_names = 'omegaa omegab'
hj_names = 'ha hb'
args = 'etab0 w'
[../]
[./ACa0_int1]
type = ACInterface2DMultiPhase1
variable = etaa0
etas = 'etab0'
kappa_name = kappaa
dkappadgrad_etaa_name = dkappadgrad_etaa
d2kappadgrad_etaa_name = d2kappadgrad_etaa
[../]
[./ACa0_int2]
type = ACInterface2DMultiPhase2
variable = etaa0
kappa_name = kappaa
dkappadgrad_etaa_name = dkappadgrad_etaa
[../]
[./ea0_dot]
type = TimeDerivative
variable = etaa0
[../]
# Order parameter eta_beta0
[./ACb0_bulk]
type = ACGrGrMulti
variable = etab0
v = 'etaa0'
gamma_names = 'gab'
[../]
[./ACb0_sw]
type = ACSwitching
variable = etab0
Fj_names = 'omegaa omegab'
hj_names = 'ha hb'
args = 'etaa0 w'
[../]
[./ACb0_int1]
type = ACInterface2DMultiPhase1
variable = etab0
etas = 'etaa0'
kappa_name = kappab
dkappadgrad_etaa_name = dkappadgrad_etab
d2kappadgrad_etaa_name = d2kappadgrad_etab
[../]
[./ACb0_int2]
type = ACInterface2DMultiPhase2
variable = etab0
kappa_name = kappab
dkappadgrad_etaa_name = dkappadgrad_etab
[../]
[./eb0_dot]
type = TimeDerivative
variable = etab0
[../]
#Chemical potential
[./w_dot]
type = SusceptibilityTimeDerivative
variable = w
f_name = chi
args = '' # in this case chi (the susceptibility) is simply a constant
[../]
[./Diffusion]
type = MatDiffusion
variable = w
diffusivity = Dchi
args = ''
[../]
[./coupled_etaa0dot]
type = CoupledSwitchingTimeDerivative
variable = w
v = etaa0
Fj_names = 'rhoa rhob'
hj_names = 'ha hb'
args = 'etaa0 etab0'
[../]
[./coupled_etab0dot]
type = CoupledSwitchingTimeDerivative
variable = w
v = etab0
Fj_names = 'rhoa rhob'
hj_names = 'ha hb'
args = 'etaa0 etab0'
[../]
[./coupled_etaa0dot_int]
type = AntitrappingCurrent
variable = w
v = etaa0
f_name = rhodiff
[../]
[./coupled_etab0dot_int]
type = AntitrappingCurrent
variable = w
v = etab0
f_name = rhodiff
[../]
[]
[Materials]
[./ha]
type = SwitchingFunctionMultiPhaseMaterial
h_name = ha
all_etas = 'etaa0 etab0'
phase_etas = 'etaa0'
[../]
[./hb]
type = SwitchingFunctionMultiPhaseMaterial
h_name = hb
all_etas = 'etaa0 etab0'
phase_etas = 'etab0'
[../]
[./omegaa]
type = DerivativeParsedMaterial
args = 'w'
f_name = omegaa
material_property_names = 'Vm ka caeq'
function = '-0.5*w^2/Vm^2/ka-w/Vm*caeq'
[../]
[./omegab]
type = DerivativeParsedMaterial
args = 'w'
f_name = omegab
material_property_names = 'Vm kb cbeq'
function = '-0.5*w^2/Vm^2/kb-w/Vm*cbeq'
[../]
[./rhoa]
type = DerivativeParsedMaterial
args = 'w'
f_name = rhoa
material_property_names = 'Vm ka caeq'
function = 'w/Vm^2/ka + caeq/Vm'
[../]
[./rhob]
type = DerivativeParsedMaterial
args = 'w'
f_name = rhob
material_property_names = 'Vm kb cbeq'
function = 'w/Vm^2/kb + cbeq/Vm'
[../]
[./int]
type = DerivativeParsedMaterial
args = 'w'
f_name = rhodiff
material_property_names = 'rhoa rhob'
constant_names = 'int_width'
constant_expressions = '0.8'
function = 'int_width*(rhob-rhoa)'
[../]
[./kappaa]
type = InterfaceOrientationMultiphaseMaterial
kappa_name = kappaa
dkappadgrad_etaa_name = dkappadgrad_etaa
d2kappadgrad_etaa_name = d2kappadgrad_etaa
etaa = etaa0
etab = etab0
[../]
[./kappab]
type = InterfaceOrientationMultiphaseMaterial
kappa_name = kappab
dkappadgrad_etaa_name = dkappadgrad_etab
d2kappadgrad_etaa_name = d2kappadgrad_etab
etaa = etab0
etab = etaa0
[../]
[./const]
type = GenericConstantMaterial
prop_names = 'L D chi Vm ka caeq kb cbeq gab mu'
prop_values = '1.0 1.0 0.1 1.0 10.0 0.1 10.0 0.9 4.5 10.0'
[../]
[./Mobility]
type = ParsedMaterial
f_name = Dchi
material_property_names = 'D chi'
function = 'D*chi'
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
scheme = bdf2
petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_pc_type -pc_asm_overlap'
petsc_options_value = 'asm 31 lu 1'
l_tol = 1.0e-3
nl_rel_tol = 1.0e-8
nl_abs_tol = 1e-8
num_steps = 3
[./TimeStepper]
type = IterationAdaptiveDT
dt = 0.001
[../]
[]
[Outputs]
exodus = true
[]
modules/phase_field/test/tests/SoretDiffusion/direct_temp.i
[Mesh]
type = GeneratedMesh
dim = 1
nx = 30
xmax = 500
elem_type = EDGE
[]
[GlobalParams]
polynomial_order = 8
[]
[Variables]
[./c]
family = HERMITE
order = THIRD
[../]
[./T]
initial_condition = 1000.0
scaling = 1.0e5
[../]
[]
[ICs]
[./c_IC]
type = SmoothCircleIC
x1 = 125.0
y1 = 0.0
radius = 60.0
invalue = 1.0
outvalue = 0.1
int_width = 100.0
variable = c
[../]
[]
[Kernels]
[./c_int]
type = CHInterface
variable = c
kappa_name = kappa
mob_name = M
[../]
[./c_bulk]
type = CahnHilliard
variable = c
mob_name = M
f_name = F
[../]
[./c_soret]
type = SoretDiffusion
variable = c
T = T
diff_name = D
Q_name = Qstar
[../]
[./c_dot]
type = TimeDerivative
variable = c
[../]
[./HtCond]
type = MatDiffusion
variable = T
diffusivity = thermal_conductivity
[../]
[]
[BCs]
[./Left_T]
type = DirichletBC
variable = T
boundary = left
value = 1000.0
[../]
[./Right_T]
type = DirichletBC
variable = T
boundary = right
value = 1015.0
[../]
[]
[Materials]
[./Copper]
type = PFParamsPolyFreeEnergy
c = c
T = T # K
int_width = 60.0
length_scale = 1.0e-9
time_scale = 1.0e-9
D0 = 3.1e-5 # m^2/s, from Brown1980
Em = 0.71 # in eV, from Balluffi1978 Table 2
Ef = 1.28 # in eV, from Balluffi1978 Table 2
surface_energy = 0.708 # Total guess
[../]
[./thcond]
type = ParsedMaterial
args = 'c'
function = 'if(c>0.7,1e-8,4e-8)'
f_name = thermal_conductivity
outputs = exodus
[../]
[./free_energy]
type = PolynomialFreeEnergy
c = c
derivative_order = 3
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
scheme = 'bdf2'
solve_type = 'PJFNK'
l_max_its = 30
l_tol = 1.0e-4
nl_max_its = 25
nl_rel_tol = 1.0e-9
num_steps = 60
dt = 8.0
[]
[Outputs]
exodus = true
[]