- combinatorial_geometryFunction expression encoding a combinatorial geometry
C++ Type:std::string
Description:Function expression encoding a combinatorial geometry
- inputThe mesh we want to modify
C++ Type:MeshGeneratorName
Description:The mesh we want to modify
- new_sideset_nameThe name of the new sideset
C++ Type:BoundaryName
Description:The name of the new sideset
ParsedGenerateSideset
A MeshGenerator that adds element sides to a sideset if the centroid satisfies the combinatorial_geometry expression. Optionally, element sides are also added if they are included in included_subdomain_ids and if they feature the designated normal.
Input Parameters
- constant_expressionsVector of values for the constants in constant_names (can be an FParser expression)
C++ Type:std::vector<std::string>
Options:
Description:Vector of values for the constants in constant_names (can be an FParser expression)
- constant_namesVector of constants used in the parsed function (use this for kB etc.)
C++ Type:std::vector<std::string>
Options:
Description:Vector of constants used in the parsed function (use this for kB etc.)
- fixed_normalFalseThis Boolean determines whether we fix our normal or allow it to vary to "paint" around curves
Default:False
C++ Type:bool
Options:
Description:This Boolean determines whether we fix our normal or allow it to vary to "paint" around curves
- included_neighbor_idsA set of neighboring subdomain ids. A face is only added if the subdomain id of the neighbor is in this set
C++ Type:std::vector<unsigned short>
Options:
Description:A set of neighboring subdomain ids. A face is only added if the subdomain id of the neighbor is in this set
- included_subdomain_idsA set of subdomain ids whose sides will be included in the new sidesets
C++ Type:std::vector<unsigned short>
Options:
Description:A set of subdomain ids whose sides will be included in the new sidesets
- normal0 0 0If provided specifies the normal vector on sides that are added to the new
Default:0 0 0
C++ Type:libMesh::Point
Options:
Description:If provided specifies the normal vector on sides that are added to the new
- replaceFalseIf true, replace the old sidesets. If false, the current sidesets (if any) will be preserved.
Default:False
C++ Type:bool
Options:
Description:If true, replace the old sidesets. If false, the current sidesets (if any) will be preserved.
- show_infoFalseWhether or not to show mesh info after generating the mesh (bounding box, element types, sidesets, nodesets, subdomains, etc)
Default:False
C++ Type:bool
Options:
Description:Whether or not to show mesh info after generating the mesh (bounding box, element types, sidesets, nodesets, subdomains, etc)
- variance0.1The variance [0.0 - 1.0] allowed when comparing normals
Default:0.1
C++ Type:double
Options:
Description:The variance [0.0 - 1.0] allowed when comparing normals
Optional Parameters
- control_tagsAdds user-defined labels for accessing object parameters via control logic.
C++ Type:std::vector<std::string>
Options:
Description:Adds user-defined labels for accessing object parameters via control logic.
- disable_fpoptimizerFalseDisable the function parser algebraic optimizer
Default:False
C++ Type:bool
Options:
Description:Disable the function parser algebraic optimizer
- enableTrueSet the enabled status of the MooseObject.
Default:True
C++ Type:bool
Options:
Description:Set the enabled status of the MooseObject.
- enable_ad_cacheTrueEnable cacheing of function derivatives for faster startup time
Default:True
C++ Type:bool
Options:
Description:Enable cacheing of function derivatives for faster startup time
- enable_auto_optimizeTrueEnable automatic immediate optimization of derivatives
Default:True
C++ Type:bool
Options:
Description:Enable automatic immediate optimization of derivatives
- enable_jitTrueEnable just-in-time compilation of function expressions for faster evaluation
Default:True
C++ Type:bool
Options:
Description:Enable just-in-time compilation of function expressions for faster evaluation
- evalerror_behaviornanWhat to do if evaluation error occurs. Options are to pass a nan, pass a nan with a warning, throw a error, or throw an exception
Default:nan
C++ Type:MooseEnum
Options:nan, nan_warning, error, exception
Description:What to do if evaluation error occurs. Options are to pass a nan, pass a nan with a warning, throw a error, or throw an exception
Advanced Parameters
Input Files
- (modules/porous_flow/examples/tutorial/03.i)
- (modules/porous_flow/examples/tutorial/04.i)
- (modules/porous_flow/examples/tutorial/11.i)
- (modules/heat_conduction/test/tests/radiation_transfer_symmetry/cavity_with_pillars.i)
- (modules/porous_flow/examples/tutorial/08_KT.i)
- (test/tests/meshgenerators/show_info/show_info.i)
- (test/tests/meshgenerators/parsed_generate_sideset/parsed_generate_sideset_neighbor_sub_id.i)
- (modules/porous_flow/examples/tutorial/00.i)
- (modules/heat_conduction/test/tests/radiation_transfer_action/radiative_transfer_action_external_boundary.i)
- (modules/heat_conduction/test/tests/view_factors_symmetry/cavity_with_pillars_symmetry_bc.i)
- (modules/porous_flow/examples/tutorial/05_tabulated.i)
- (modules/porous_flow/examples/tutorial/06_KT.i)
- (modules/porous_flow/examples/tutorial/10.i)
- (modules/porous_flow/examples/tutorial/08.i)
- (test/tests/meshgenerators/fancy_extruder_generator/fancy_extruder_then_parsed_gen_sideset.i)
- (modules/porous_flow/examples/tutorial/05.i)
- (test/tests/fvbcs/fv_neumannbc/fv_neumannbc.i)
- (modules/heat_conduction/test/tests/radiation_transfer_action/radiative_transfer_action_external_boundary_ray_tracing.i)
- (modules/porous_flow/examples/tutorial/00_2D.i)
- (modules/porous_flow/examples/tutorial/07.i)
- (modules/porous_flow/examples/tutorial/01.i)
- (modules/heat_conduction/test/tests/view_factors_symmetry/cavity_with_pillars.i)
- (modules/heat_conduction/test/tests/radiative_bcs/radiative_bc_cyl.i)
- (modules/porous_flow/examples/tutorial/06.i)
- (modules/porous_flow/examples/groundwater/ex02_steady_state.i)
- (modules/porous_flow/examples/tutorial/11_2D.i)
- (test/tests/mesh_modifiers/parsed_sideset/parsed_sideset.i)
- (test/tests/meshgenerators/parsed_generate_sideset/parsed_generate_sideset.i)
- (modules/heat_conduction/test/tests/radiation_transfer_symmetry/cavity_with_pillars_symmetry_bc.i)
(modules/porous_flow/examples/tutorial/03.i)
# Darcy flow with heat advection and conduction
[Mesh]
[annular]
type = AnnularMeshGenerator
nr = 10
rmin = 1.0
rmax = 10
growth_r = 1.4
nt = 4
dmin = 0
dmax = 90
[]
[make3D]
type = MeshExtruderGenerator
extrusion_vector = '0 0 12'
num_layers = 3
bottom_sideset = 'bottom'
top_sideset = 'top'
input = annular
[]
[shift_down]
type = TransformGenerator
transform = TRANSLATE
vector_value = '0 0 -6'
input = make3D
[]
[aquifer]
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 0 -2'
top_right = '10 10 2'
input = shift_down
[]
[injection_area]
type = ParsedGenerateSideset
combinatorial_geometry = 'x*x+y*y<1.01'
included_subdomain_ids = 1
new_sideset_name = 'injection_area'
input = 'aquifer'
[]
[rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caps aquifer'
input = 'injection_area'
[]
[]
[GlobalParams]
PorousFlowDictator = dictator
[]
[Variables]
[porepressure]
[]
[temperature]
initial_condition = 293
scaling = 1E-8
[]
[]
[PorousFlowBasicTHM]
porepressure = porepressure
temperature = temperature
coupling_type = ThermoHydro
gravity = '0 0 0'
fp = the_simple_fluid
[]
[BCs]
[constant_injection_porepressure]
type = DirichletBC
variable = porepressure
value = 1E6
boundary = injection_area
[]
[constant_injection_temperature]
type = DirichletBC
variable = temperature
value = 313
boundary = injection_area
[]
[]
[Modules]
[FluidProperties]
[the_simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 2E9
viscosity = 1.0E-3
density0 = 1000.0
thermal_expansion = 0.0002
cp = 4194
cv = 4186
porepressure_coefficient = 0
[]
[]
[]
[Materials]
[porosity]
type = PorousFlowPorosity
porosity_zero = 0.1
[]
[biot_modulus]
type = PorousFlowConstantBiotModulus
biot_coefficient = 0.8
solid_bulk_compliance = 2E-7
fluid_bulk_modulus = 1E7
[]
[permeability_aquifer]
type = PorousFlowPermeabilityConst
block = aquifer
permeability = '1E-14 0 0 0 1E-14 0 0 0 1E-14'
[]
[permeability_caps]
type = PorousFlowPermeabilityConst
block = caps
permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-16'
[]
[thermal_expansion]
type = PorousFlowConstantThermalExpansionCoefficient
biot_coefficient = 0.8
drained_coefficient = 0.003
fluid_coefficient = 0.0002
[]
[rock_internal_energy]
type = PorousFlowMatrixInternalEnergy
density = 2500.0
specific_heat_capacity = 1200.0
[]
[thermal_conductivity]
type = PorousFlowThermalConductivityIdeal
dry_thermal_conductivity = '10 0 0 0 10 0 0 0 10'
block = 'caps aquifer'
[]
[]
[Preconditioning]
active = basic
[basic]
type = SMP
full = true
petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = ' asm lu NONZERO 2'
[]
[preferred_but_might_not_be_installed]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
[]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1E6
dt = 1E5
nl_abs_tol = 1E-10
[]
[Outputs]
exodus = true
[]
(modules/porous_flow/examples/tutorial/04.i)
# Darcy flow with heat advection and conduction, and elasticity
[Mesh]
[annular]
type = AnnularMeshGenerator
nr = 10
rmin = 1.0
rmax = 10
growth_r = 1.4
nt = 4
dmin = 0
dmax = 90
[]
[make3D]
type = MeshExtruderGenerator
extrusion_vector = '0 0 12'
num_layers = 3
bottom_sideset = 'bottom'
top_sideset = 'top'
input = annular
[]
[shift_down]
type = TransformGenerator
transform = TRANSLATE
vector_value = '0 0 -6'
input = make3D
[]
[aquifer]
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 0 -2'
top_right = '10 10 2'
input = shift_down
[]
[injection_area]
type = ParsedGenerateSideset
combinatorial_geometry = 'x*x+y*y<1.01'
included_subdomain_ids = 1
new_sideset_name = 'injection_area'
input = 'aquifer'
[]
[rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caps aquifer'
input = 'injection_area'
[]
[]
[GlobalParams]
displacements = 'disp_x disp_y disp_z'
PorousFlowDictator = dictator
biot_coefficient = 1.0
[]
[Variables]
[porepressure]
[]
[temperature]
initial_condition = 293
scaling = 1E-8
[]
[disp_x]
scaling = 1E-10
[]
[disp_y]
scaling = 1E-10
[]
[disp_z]
scaling = 1E-10
[]
[]
[PorousFlowBasicTHM]
porepressure = porepressure
temperature = temperature
coupling_type = ThermoHydroMechanical
gravity = '0 0 0'
fp = the_simple_fluid
eigenstrain_names = thermal_contribution
use_displaced_mesh = false
[]
[BCs]
[constant_injection_porepressure]
type = DirichletBC
variable = porepressure
value = 1E6
boundary = injection_area
[]
[constant_injection_temperature]
type = DirichletBC
variable = temperature
value = 313
boundary = injection_area
[]
[roller_tmax]
type = DirichletBC
variable = disp_x
value = 0
boundary = dmax
[]
[roller_tmin]
type = DirichletBC
variable = disp_y
value = 0
boundary = dmin
[]
[roller_top_bottom]
type = DirichletBC
variable = disp_z
value = 0
boundary = 'top bottom'
[]
[cavity_pressure_x]
type = Pressure
boundary = injection_area
variable = disp_x
component = 0
factor = 1E6
use_displaced_mesh = false
[]
[cavity_pressure_y]
type = Pressure
boundary = injection_area
variable = disp_y
component = 1
factor = 1E6
use_displaced_mesh = false
[]
[]
[AuxVariables]
[stress_rr]
family = MONOMIAL
order = CONSTANT
[]
[stress_pp]
family = MONOMIAL
order = CONSTANT
[]
[]
[AuxKernels]
[stress_rr]
type = RankTwoScalarAux
rank_two_tensor = stress
variable = stress_rr
scalar_type = RadialStress
point1 = '0 0 0'
point2 = '0 0 1'
[]
[stress_pp]
type = RankTwoScalarAux
rank_two_tensor = stress
variable = stress_pp
scalar_type = HoopStress
point1 = '0 0 0'
point2 = '0 0 1'
[]
[]
[Modules]
[FluidProperties]
[the_simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 2E9
viscosity = 1.0E-3
density0 = 1000.0
thermal_expansion = 0.0002
cp = 4194
cv = 4186
porepressure_coefficient = 0
[]
[]
[]
[Materials]
[porosity]
type = PorousFlowPorosity
porosity_zero = 0.1
[]
[biot_modulus]
type = PorousFlowConstantBiotModulus
solid_bulk_compliance = 2E-7
fluid_bulk_modulus = 1E7
[]
[permeability_aquifer]
type = PorousFlowPermeabilityConst
block = aquifer
permeability = '1E-14 0 0 0 1E-14 0 0 0 1E-14'
[]
[permeability_caps]
type = PorousFlowPermeabilityConst
block = caps
permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-16'
[]
[thermal_expansion]
type = PorousFlowConstantThermalExpansionCoefficient
drained_coefficient = 0.003
fluid_coefficient = 0.0002
[]
[rock_internal_energy]
type = PorousFlowMatrixInternalEnergy
density = 2500.0
specific_heat_capacity = 1200.0
[]
[thermal_conductivity]
type = PorousFlowThermalConductivityIdeal
dry_thermal_conductivity = '10 0 0 0 10 0 0 0 10'
block = 'caps aquifer'
[]
[elasticity_tensor]
type = ComputeIsotropicElasticityTensor
youngs_modulus = 5E9
poissons_ratio = 0.0
[]
[strain]
type = ComputeSmallStrain
eigenstrain_names = thermal_contribution
[]
[thermal_contribution]
type = ComputeThermalExpansionEigenstrain
temperature = temperature
thermal_expansion_coeff = 0.001 # this is the linear thermal expansion coefficient
eigenstrain_name = thermal_contribution
stress_free_temperature = 293
[]
[stress]
type = ComputeLinearElasticStress
[]
[]
[Preconditioning]
active = basic
[basic]
type = SMP
full = true
petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = ' asm lu NONZERO 2'
[]
[preferred_but_might_not_be_installed]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
[]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1E6
dt = 1E5
nl_abs_tol = 1E-15
nl_rel_tol = 1E-14
[]
[Outputs]
exodus = true
[]
(modules/porous_flow/examples/tutorial/11.i)
# Two-phase borehole injection problem
[Mesh]
[annular]
type = AnnularMeshGenerator
nr = 10
rmin = 1.0
rmax = 10
growth_r = 1.4
nt = 4
dmin = 0
dmax = 90
[]
[make3D]
input = annular
type = MeshExtruderGenerator
extrusion_vector = '0 0 12'
num_layers = 3
bottom_sideset = 'bottom'
top_sideset = 'top'
[]
[shift_down]
type = TransformGenerator
transform = TRANSLATE
vector_value = '0 0 -6'
input = make3D
[]
[aquifer]
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 0 -2'
top_right = '10 10 2'
input = shift_down
[]
[injection_area]
type = ParsedGenerateSideset
combinatorial_geometry = 'x*x+y*y<1.01'
included_subdomain_ids = 1
new_sideset_name = 'injection_area'
input = 'aquifer'
[]
[rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caps aquifer'
input = 'injection_area'
[]
[]
[UserObjects]
[dictator]
type = PorousFlowDictator
porous_flow_vars = 'pwater pgas T disp_x disp_y'
number_fluid_phases = 2
number_fluid_components = 2
[]
[pc]
type = PorousFlowCapillaryPressureVG
alpha = 1E-6
m = 0.6
[]
[]
[GlobalParams]
displacements = 'disp_x disp_y disp_z'
gravity = '0 0 0'
biot_coefficient = 1.0
PorousFlowDictator = dictator
[]
[Variables]
[pwater]
initial_condition = 20E6
[]
[pgas]
initial_condition = 20.1E6
[]
[T]
initial_condition = 330
scaling = 1E-5
[]
[disp_x]
scaling = 1E-5
[]
[disp_y]
scaling = 1E-5
[]
[]
[Kernels]
[mass_water_dot]
type = PorousFlowMassTimeDerivative
fluid_component = 0
use_displaced_mesh = false
variable = pwater
[]
[flux_water]
type = PorousFlowAdvectiveFlux
fluid_component = 0
use_displaced_mesh = false
variable = pwater
[]
[vol_strain_rate_water]
type = PorousFlowMassVolumetricExpansion
fluid_component = 0
use_displaced_mesh = false
variable = pwater
[]
[mass_co2_dot]
type = PorousFlowMassTimeDerivative
fluid_component = 1
use_displaced_mesh = false
variable = pgas
[]
[flux_co2]
type = PorousFlowAdvectiveFlux
fluid_component = 1
use_displaced_mesh = false
variable = pgas
[]
[vol_strain_rate_co2]
type = PorousFlowMassVolumetricExpansion
fluid_component = 1
use_displaced_mesh = false
variable = pgas
[]
[energy_dot]
type = PorousFlowEnergyTimeDerivative
use_displaced_mesh = false
variable = T
[]
[advection]
type = PorousFlowHeatAdvection
use_displaced_mesh = false
variable = T
[]
[conduction]
type = PorousFlowHeatConduction
use_displaced_mesh = false
variable = T
[]
[vol_strain_rate_heat]
type = PorousFlowHeatVolumetricExpansion
use_displaced_mesh = false
variable = T
[]
[grad_stress_x]
type = StressDivergenceTensors
temperature = T
variable = disp_x
eigenstrain_names = thermal_contribution
use_displaced_mesh = false
component = 0
[]
[poro_x]
type = PorousFlowEffectiveStressCoupling
variable = disp_x
use_displaced_mesh = false
component = 0
[]
[grad_stress_y]
type = StressDivergenceTensors
temperature = T
variable = disp_y
eigenstrain_names = thermal_contribution
use_displaced_mesh = false
component = 1
[]
[poro_y]
type = PorousFlowEffectiveStressCoupling
variable = disp_y
use_displaced_mesh = false
component = 1
[]
[]
[AuxVariables]
[disp_z]
[]
[effective_fluid_pressure]
family = MONOMIAL
order = CONSTANT
[]
[mass_frac_phase0_species0]
initial_condition = 1 # all water in phase=0
[]
[mass_frac_phase1_species0]
initial_condition = 0 # no water in phase=1
[]
[sgas]
family = MONOMIAL
order = CONSTANT
[]
[swater]
family = MONOMIAL
order = CONSTANT
[]
[stress_rr]
family = MONOMIAL
order = CONSTANT
[]
[stress_tt]
family = MONOMIAL
order = CONSTANT
[]
[stress_zz]
family = MONOMIAL
order = CONSTANT
[]
[porosity]
family = MONOMIAL
order = CONSTANT
[]
[]
[AuxKernels]
[effective_fluid_pressure]
type = ParsedAux
args = 'pwater pgas swater sgas'
function = 'pwater * swater + pgas * sgas'
variable = effective_fluid_pressure
[]
[swater]
type = PorousFlowPropertyAux
variable = swater
property = saturation
phase = 0
execute_on = timestep_end
[]
[sgas]
type = PorousFlowPropertyAux
variable = sgas
property = saturation
phase = 1
execute_on = timestep_end
[]
[stress_rr]
type = RankTwoScalarAux
variable = stress_rr
rank_two_tensor = stress
scalar_type = RadialStress
point1 = '0 0 0'
point2 = '0 0 1'
execute_on = timestep_end
[]
[stress_tt]
type = RankTwoScalarAux
variable = stress_tt
rank_two_tensor = stress
scalar_type = HoopStress
point1 = '0 0 0'
point2 = '0 0 1'
execute_on = timestep_end
[]
[stress_zz]
type = RankTwoAux
variable = stress_zz
rank_two_tensor = stress
index_i = 2
index_j = 2
execute_on = timestep_end
[]
[porosity]
type = PorousFlowPropertyAux
variable = porosity
property = porosity
execute_on = timestep_end
[]
[]
[BCs]
[roller_tmax]
type = DirichletBC
variable = disp_x
value = 0
boundary = dmax
[]
[roller_tmin]
type = DirichletBC
variable = disp_y
value = 0
boundary = dmin
[]
[pinned_top_bottom_x]
type = DirichletBC
variable = disp_x
value = 0
boundary = 'top bottom'
[]
[pinned_top_bottom_y]
type = DirichletBC
variable = disp_y
value = 0
boundary = 'top bottom'
[]
[cavity_pressure_x]
type = Pressure
boundary = injection_area
variable = disp_x
component = 0
postprocessor = constrained_effective_fluid_pressure_at_wellbore
use_displaced_mesh = false
[]
[cavity_pressure_y]
type = Pressure
boundary = injection_area
variable = disp_y
component = 1
postprocessor = constrained_effective_fluid_pressure_at_wellbore
use_displaced_mesh = false
[]
[cold_co2]
type = DirichletBC
boundary = injection_area
variable = T
value = 290 # injection temperature
use_displaced_mesh = false
[]
[constant_co2_injection]
type = PorousFlowSink
boundary = injection_area
variable = pgas
fluid_phase = 1
flux_function = -1E-4
use_displaced_mesh = false
[]
[outer_water_removal]
type = PorousFlowPiecewiseLinearSink
boundary = rmax
variable = pwater
fluid_phase = 0
pt_vals = '0 1E9'
multipliers = '0 1E8'
PT_shift = 20E6
use_mobility = true
use_relperm = true
use_displaced_mesh = false
[]
[outer_co2_removal]
type = PorousFlowPiecewiseLinearSink
boundary = rmax
variable = pgas
fluid_phase = 1
pt_vals = '0 1E9'
multipliers = '0 1E8'
PT_shift = 20.1E6
use_mobility = true
use_relperm = true
use_displaced_mesh = false
[]
[]
[Modules]
[FluidProperties]
[true_water]
type = Water97FluidProperties
[]
[tabulated_water]
type = TabulatedFluidProperties
fp = true_water
temperature_min = 275
pressure_max = 1E8
interpolated_properties = 'density viscosity enthalpy internal_energy'
fluid_property_file = water97_tabulated_11.csv
[]
[true_co2]
type = CO2FluidProperties
[]
[tabulated_co2]
type = TabulatedFluidProperties
fp = true_co2
temperature_min = 275
pressure_max = 1E8
interpolated_properties = 'density viscosity enthalpy internal_energy'
fluid_property_file = co2_tabulated_11.csv
[]
[]
[]
[Materials]
[temperature]
type = PorousFlowTemperature
temperature = T
[]
[saturation_calculator]
type = PorousFlow2PhasePP
phase0_porepressure = pwater
phase1_porepressure = pgas
capillary_pressure = pc
[]
[massfrac]
type = PorousFlowMassFraction
mass_fraction_vars = 'mass_frac_phase0_species0 mass_frac_phase1_species0'
[]
[water]
type = PorousFlowSingleComponentFluid
fp = tabulated_water
phase = 0
[]
[co2]
type = PorousFlowSingleComponentFluid
fp = tabulated_co2
phase = 1
[]
[relperm_water]
type = PorousFlowRelativePermeabilityCorey
n = 4
s_res = 0.1
sum_s_res = 0.2
phase = 0
[]
[relperm_co2]
type = PorousFlowRelativePermeabilityBC
nw_phase = true
lambda = 2
s_res = 0.1
sum_s_res = 0.2
phase = 1
[]
[porosity_mat]
type = PorousFlowPorosity
fluid = true
mechanical = true
thermal = true
porosity_zero = 0.1
reference_temperature = 330
reference_porepressure = 20E6
thermal_expansion_coeff = 15E-6 # volumetric
solid_bulk = 8E9 # unimportant since biot = 1
[]
[permeability_aquifer]
type = PorousFlowPermeabilityKozenyCarman
block = aquifer
poroperm_function = kozeny_carman_phi0
phi0 = 0.1
n = 2
m = 2
k0 = 1E-12
[]
[permeability_caps]
type = PorousFlowPermeabilityKozenyCarman
block = caps
poroperm_function = kozeny_carman_phi0
phi0 = 0.1
n = 2
m = 2
k0 = 1E-15
k_anisotropy = '1 0 0 0 1 0 0 0 0.1'
[]
[rock_thermal_conductivity]
type = PorousFlowThermalConductivityIdeal
dry_thermal_conductivity = '2 0 0 0 2 0 0 0 2'
[]
[rock_internal_energy]
type = PorousFlowMatrixInternalEnergy
specific_heat_capacity = 1100
density = 2300
[]
[elasticity_tensor]
type = ComputeIsotropicElasticityTensor
youngs_modulus = 5E9
poissons_ratio = 0.0
[]
[strain]
type = ComputeSmallStrain
eigenstrain_names = 'thermal_contribution initial_stress'
[]
[thermal_contribution]
type = ComputeThermalExpansionEigenstrain
temperature = T
thermal_expansion_coeff = 5E-6 # this is the linear thermal expansion coefficient
eigenstrain_name = thermal_contribution
stress_free_temperature = 330
[]
[initial_strain]
type = ComputeEigenstrainFromInitialStress
initial_stress = '20E6 0 0 0 20E6 0 0 0 20E6'
eigenstrain_name = initial_stress
[]
[stress]
type = ComputeLinearElasticStress
[]
[effective_fluid_pressure_mat]
type = PorousFlowEffectiveFluidPressure
[]
[volumetric_strain]
type = PorousFlowVolumetricStrain
[]
[]
[Postprocessors]
[effective_fluid_pressure_at_wellbore]
type = PointValue
variable = effective_fluid_pressure
point = '1 0 0'
execute_on = timestep_begin
use_displaced_mesh = false
[]
[constrained_effective_fluid_pressure_at_wellbore]
type = FunctionValuePostprocessor
function = constrain_effective_fluid_pressure
execute_on = timestep_begin
[]
[]
[Functions]
[constrain_effective_fluid_pressure]
type = ParsedFunction
vars = effective_fluid_pressure_at_wellbore
vals = effective_fluid_pressure_at_wellbore
value = 'max(effective_fluid_pressure_at_wellbore, 20E6)'
[]
[]
[Preconditioning]
active = basic
[basic]
type = SMP
full = true
petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = ' asm lu NONZERO 2'
[]
[preferred_but_might_not_be_installed]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
[]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1E3
[TimeStepper]
type = IterationAdaptiveDT
dt = 1E3
growth_factor = 1.2
optimal_iterations = 10
[]
nl_abs_tol = 1E-7
[]
[Outputs]
exodus = true
[]
(modules/heat_conduction/test/tests/radiation_transfer_symmetry/cavity_with_pillars.i)
#
# inner_left: 8
# inner_right: 9
# inner_top: 12
# inner_bottom: 11
# inner_front: 10
# back_2: 7
# obstruction: 6
#
[Mesh]
[cartesian]
type = CartesianMeshGenerator
dim = 3
dx = '0.4 0.5 0.5 0.5 0.5 0.5 0.5 0.4'
dy = '0.5 0.75 0.5'
dz = '1.5 0.5'
subdomain_id = '
3 1 1 1 1 1 1 4
3 1 2 1 1 2 1 4
3 1 1 1 1 1 1 4
3 1 1 1 1 1 1 4
3 1 1 1 1 1 1 4
3 1 1 1 1 1 1 4
'
[]
[add_obstruction]
type = SideSetsBetweenSubdomainsGenerator
primary_block = 2
paired_block = 1
new_boundary = obstruction
input = cartesian
[]
[add_new_back]
type = ParsedGenerateSideset
combinatorial_geometry = 'abs(z) < 1e-10'
included_subdomain_ids = '1'
normal = '0 0 -1'
new_sideset_name = back_2
input = add_obstruction
[]
[add_inner_left]
type = SideSetsBetweenSubdomainsGenerator
primary_block = 3
paired_block = 1
new_boundary = inner_left
input = add_new_back
[]
[add_inner_right]
type = SideSetsBetweenSubdomainsGenerator
primary_block = 4
paired_block = 1
new_boundary = inner_right
input = add_inner_left
[]
[add_inner_front]
type = ParsedGenerateSideset
combinatorial_geometry = 'abs(z - 2) < 1e-10'
included_subdomain_ids = '1'
normal = '0 0 1'
new_sideset_name = inner_front
input = add_inner_right
[]
[add_inner_bottom]
type = ParsedGenerateSideset
combinatorial_geometry = 'abs(y) < 1e-10'
included_subdomain_ids = '1'
normal = '0 -1 0'
new_sideset_name = inner_bottom
input = add_inner_front
[]
[add_inner_top]
type = ParsedGenerateSideset
combinatorial_geometry = 'abs(y - 1.75) < 1e-10'
included_subdomain_ids = '1'
normal = '0 1 0'
new_sideset_name = inner_top
input = add_inner_bottom
[]
[]
[Problem]
kernel_coverage_check = false
[]
[Variables]
[temperature]
block = '2 3 4'
initial_condition = 300
[]
[]
[Kernels]
[conduction]
type = HeatConduction
variable = temperature
block = '2 3 4'
diffusion_coefficient = 1
[]
[source]
type = BodyForce
variable = temperature
value = 1000
block = '2'
[]
[]
[BCs]
[convective]
type = CoupledConvectiveHeatFluxBC
variable = temperature
T_infinity = 300
htc = 50
boundary = 'left right'
[]
[]
[GrayDiffuseRadiation]
[cavity]
boundary = '6 7 8 9 10 11 12'
emissivity = '1 1 1 1 1 1 1'
n_patches = '1 1 1 1 1 1 1'
adiabatic_boundary = '7 10 11 12'
partitioners = 'metis metis metis metis metis metis metis'
temperature = temperature
ray_tracing_face_order = SECOND
normalize_view_factor = false
[]
[]
[Postprocessors]
[Tpv]
type = PointValue
variable = temperature
point = '0.3 0.5 0.5'
[]
[volume]
type = VolumePostprocessor
[]
[]
[Executioner]
type = Steady
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]
(modules/porous_flow/examples/tutorial/08_KT.i)
# Unsaturated Darcy-Richards flow
[Mesh]
[annular]
type = AnnularMeshGenerator
nr = 10
rmin = 1.0
rmax = 10
growth_r = 1.4
nt = 4
dmin = 0
dmax = 90
[]
[make3D]
input = annular
type = MeshExtruderGenerator
extrusion_vector = '0 0 12'
num_layers = 3
bottom_sideset = 'bottom'
top_sideset = 'top'
[]
[shift_down]
type = TransformGenerator
transform = TRANSLATE
vector_value = '0 0 -6'
input = make3D
[]
[aquifer]
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 0 -2'
top_right = '10 10 2'
input = shift_down
[]
[injection_area]
type = ParsedGenerateSideset
combinatorial_geometry = 'x*x+y*y<1.01'
included_subdomain_ids = 1
new_sideset_name = 'injection_area'
input = 'aquifer'
[]
[rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caps aquifer'
input = 'injection_area'
[]
[]
[GlobalParams]
PorousFlowDictator = dictator
[]
[Variables]
[porepressure]
[]
[]
[PorousFlowUnsaturated]
porepressure = porepressure
coupling_type = Hydro
gravity = '0 0 0'
fp = the_simple_fluid
relative_permeability_exponent = 3
relative_permeability_type = Corey
residual_saturation = 0.1
van_genuchten_alpha = 1E-6
van_genuchten_m = 0.6
stabilization = KT
flux_limiter_type = None
[]
[BCs]
[production]
type = PorousFlowSink
variable = porepressure
fluid_phase = 0
flux_function = 1E-2
use_relperm = true
boundary = injection_area
[]
[]
[Modules]
[FluidProperties]
[the_simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 2E9
viscosity = 1.0E-3
density0 = 1000.0
[]
[]
[]
[Materials]
[porosity]
type = PorousFlowPorosity
porosity_zero = 0.1
[]
[permeability_aquifer]
type = PorousFlowPermeabilityConst
block = aquifer
permeability = '1E-14 0 0 0 1E-14 0 0 0 1E-14'
[]
[permeability_caps]
type = PorousFlowPermeabilityConst
block = caps
permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-16'
[]
[]
[Preconditioning]
active = basic
[basic]
type = SMP
full = true
petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = ' asm lu NONZERO 2'
[]
[preferred_but_might_not_be_installed]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
[]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1E5
dt = 1E5
nl_rel_tol = 1E-14
[]
[Outputs]
exodus = true
[]
(test/tests/meshgenerators/show_info/show_info.i)
[Mesh]
[gmg_quad]
type = GeneratedMeshGenerator
dim = 2
nx = 4
ny = 4
show_info = true
[]
[gmg_quad_block1]
type = ParsedSubdomainMeshGenerator
input = gmg_quad
combinatorial_geometry = 'x > 0.5'
block_name = 'dummy'
block_id = 1
show_info = true
[]
[gmg_tri]
type = GeneratedMeshGenerator
dim = 2
nx = 4
ny = 4
elem_type = TRI3
show_info = true
[]
[gmg_tri_block2]
type = ParsedSubdomainMeshGenerator
input = gmg_tri
combinatorial_geometry = 'y > 0.5'
block_id = 2
block_name = 'dummy2'
show_info = true
[]
[gmg_tri_block3]
type = ParsedSubdomainMeshGenerator
input = gmg_tri_block2
combinatorial_geometry = 'y < 0.5'
block_id = 3
block_name = 'dummy3'
show_info = true
[]
[pmg]
type = PatternedMeshGenerator
inputs = 'gmg_quad_block1 gmg_tri_block3'
pattern = '0 1 0;
1 1 0'
show_info = true
[]
[interior]
type = ParsedGenerateSideset
input = pmg
combinatorial_geometry = 'x > 0.99 & x < 1.01'
normal = '1 0 0'
new_sideset_name = interior
show_info = true
[]
[]
(test/tests/meshgenerators/parsed_generate_sideset/parsed_generate_sideset_neighbor_sub_id.i)
[Mesh]
[./cmg]
type = CartesianMeshGenerator
dim = 2
dx = '1 1'
dy = '2 2'
subdomain_id = '0 1 0 0'
[../]
[sideset]
type = ParsedGenerateSideset
input = cmg
combinatorial_geometry = 'abs(x - 1) < 1e-6'
included_neighbor_ids = '1'
new_sideset_name = interior
[]
[]
[Outputs]
exodus = true
[]
(modules/porous_flow/examples/tutorial/00.i)
# Creates the mesh for the remainder of the tutorial
[Mesh]
[annular]
type = AnnularMeshGenerator
nr = 10
rmin = 1.0
rmax = 10
growth_r = 1.4
nt = 4
dmin = 0
dmax = 90
[]
[make3D]
type = MeshExtruderGenerator
extrusion_vector = '0 0 12'
num_layers = 3
bottom_sideset = 'bottom'
top_sideset = 'top'
input = annular
[]
[shift_down]
type = TransformGenerator
transform = TRANSLATE
vector_value = '0 0 -6'
input = make3D
[]
[aquifer]
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 0 -2'
top_right = '10 10 2'
input = shift_down
[]
[injection_area]
type = ParsedGenerateSideset
combinatorial_geometry = 'x*x+y*y<1.01'
included_subdomain_ids = 1
new_sideset_name = 'injection_area'
input = 'aquifer'
[]
[rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caps aquifer'
input = 'injection_area'
[]
[]
[Variables]
[dummy_var]
[]
[]
[Kernels]
[dummy_diffusion]
type = Diffusion
variable = dummy_var
[]
[]
[Executioner]
type = Steady
[]
[Outputs]
file_base = 3D_mesh
exodus = true
[]
(modules/heat_conduction/test/tests/radiation_transfer_action/radiative_transfer_action_external_boundary.i)
[Problem]
kernel_coverage_check = false
[]
[Mesh]
[./cmg]
type = CartesianMeshGenerator
dim = 2
dx = '1 1.3 1.9'
ix = '3 3 3'
dy = '6'
iy = '9'
subdomain_id = '0 1 2'
[../]
[./inner_left]
type = SideSetsBetweenSubdomainsGenerator
input = cmg
primary_block = 0
paired_block = 1
new_boundary = 'inner_left'
[../]
[./inner_right]
type = SideSetsBetweenSubdomainsGenerator
input = inner_left
primary_block = 2
paired_block = 1
new_boundary = 'inner_right'
[../]
[./inner_top]
type = ParsedGenerateSideset
combinatorial_geometry = 'abs(y - 6) < 1e-10'
normal = '0 1 0'
included_subdomain_ids = 1
new_sideset_name = 'inner_top'
input = 'inner_right'
[../]
[./inner_bottom]
type = ParsedGenerateSideset
combinatorial_geometry = 'abs(y) < 1e-10'
normal = '0 -1 0'
included_subdomain_ids = 1
new_sideset_name = 'inner_bottom'
input = 'inner_top'
[../]
[./rename]
type = RenameBlockGenerator
old_block_id = '2'
new_block_id = '0'
input = inner_bottom
[../]
[]
[Variables]
[./temperature]
block = 0
[../]
[]
[Kernels]
[./heat_conduction]
type = HeatConduction
variable = temperature
block = 0
diffusion_coefficient = 5
[../]
[]
[GrayDiffuseRadiation]
[./cavity]
boundary = '4 5 6 7'
emissivity = '0.9 0.8 0.4 1'
n_patches = '2 2 2 3'
partitioners = 'centroid centroid centroid centroid'
centroid_partitioner_directions = 'x y y x'
temperature = temperature
adiabatic_boundary = '7'
fixed_temperature_boundary = '6'
fixed_boundary_temperatures = '800'
view_factor_calculator = analytical
[../]
[]
[BCs]
[./left]
type = DirichletBC
variable = temperature
boundary = left
value = 1000
[../]
[./right]
type = DirichletBC
variable = temperature
boundary = right
value = 300
[../]
[]
[Postprocessors]
[./average_T_inner_right]
type = SideAverageValue
variable = temperature
boundary = inner_right
[../]
[]
[Executioner]
type = Steady
[]
[Outputs]
exodus = true
[]
(modules/heat_conduction/test/tests/view_factors_symmetry/cavity_with_pillars_symmetry_bc.i)
[Mesh]
[cartesian]
type = CartesianMeshGenerator
dim = 3
dx = '0.5 0.5 0.5'
dy = '0.5 0.75 0.5'
dz = '1.5 0.5'
subdomain_id = '1 1 1
1 2 1
1 1 1
1 1 1
1 1 1
1 1 1'
[]
[add_obstruction]
type = SideSetsBetweenSubdomainsGenerator
primary_block = 2
paired_block = 1
new_boundary = obstruction
input = cartesian
[]
[add_new_back]
type = ParsedGenerateSideset
combinatorial_geometry = 'abs(z) < 1e-10'
included_subdomain_ids = '1'
normal = '0 0 -1'
new_sideset_name = back_2
input = add_obstruction
[]
[]
[UserObjects]
[view_factor_study]
type = ViewFactorRayStudy
execute_on = initial
boundary = 'left top bottom front back_2 obstruction'
face_order = FOURTH
[]
[view_factor]
type = RayTracingViewFactor
boundary = 'left top bottom front back_2 obstruction'
execute_on = INITIAL
normalize_view_factor = false
ray_study_name = view_factor_study
[]
[]
[RayBCs]
[vf_bc]
type = ViewFactorRayBC
boundary = 'left top bottom front back_2 obstruction'
[]
[symmetry]
type = ReflectRayBC
boundary = 'right'
[]
[]
[Postprocessors]
[left_left]
type = ViewFactorPP
from_boundary = left
to_boundary = left
view_factor_object_name = view_factor
[]
[]
[Problem]
solve = false
[]
[Executioner]
type = Steady
[]
[Outputs]
csv = true
[]
(modules/porous_flow/examples/tutorial/05_tabulated.i)
# Darcy flow with heat advection and conduction, using Water97 properties
[Mesh]
[annular]
type = AnnularMeshGenerator
nr = 10
rmin = 1.0
rmax = 10
growth_r = 1.4
nt = 4
dmin = 0
dmax = 90
[]
[make3D]
type = MeshExtruderGenerator
extrusion_vector = '0 0 12'
num_layers = 3
bottom_sideset = 'bottom'
top_sideset = 'top'
input = annular
[]
[shift_down]
type = TransformGenerator
transform = TRANSLATE
vector_value = '0 0 -6'
input = make3D
[]
[aquifer]
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 0 -2'
top_right = '10 10 2'
input = shift_down
[]
[injection_area]
type = ParsedGenerateSideset
combinatorial_geometry = 'x*x+y*y<1.01'
included_subdomain_ids = 1
new_sideset_name = 'injection_area'
input = 'aquifer'
[]
[rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caps aquifer'
input = 'injection_area'
[]
[]
[GlobalParams]
PorousFlowDictator = dictator
[]
[Variables]
[porepressure]
initial_condition = 1E6
[]
[temperature]
initial_condition = 313
scaling = 1E-8
[]
[]
[PorousFlowBasicTHM]
porepressure = porepressure
temperature = temperature
coupling_type = ThermoHydro
gravity = '0 0 0'
fp = tabulated_water
[]
[BCs]
[constant_injection_porepressure]
type = DirichletBC
variable = porepressure
value = 2E6
boundary = injection_area
[]
[constant_injection_temperature]
type = DirichletBC
variable = temperature
value = 333
boundary = injection_area
[]
[]
[Modules]
[FluidProperties]
[true_water]
type = Water97FluidProperties
[]
[tabulated_water]
type = TabulatedFluidProperties
fp = true_water
temperature_min = 275
interpolated_properties = 'density viscosity enthalpy internal_energy'
fluid_property_file = water97_tabulated.csv
[]
[]
[]
[Materials]
[porosity]
type = PorousFlowPorosity
porosity_zero = 0.1
[]
[biot_modulus]
type = PorousFlowConstantBiotModulus
biot_coefficient = 0.8
solid_bulk_compliance = 2E-7
fluid_bulk_modulus = 1E7
[]
[permeability_aquifer]
type = PorousFlowPermeabilityConst
block = aquifer
permeability = '1E-14 0 0 0 1E-14 0 0 0 1E-14'
[]
[permeability_caps]
type = PorousFlowPermeabilityConst
block = caps
permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-16'
[]
[thermal_expansion]
type = PorousFlowConstantThermalExpansionCoefficient
biot_coefficient = 0.8
drained_coefficient = 0.003
fluid_coefficient = 0.0002
[]
[rock_internal_energy]
type = PorousFlowMatrixInternalEnergy
density = 2500.0
specific_heat_capacity = 1200.0
[]
[thermal_conductivity]
type = PorousFlowThermalConductivityIdeal
dry_thermal_conductivity = '10 0 0 0 10 0 0 0 10'
block = 'caps aquifer'
[]
[]
[Preconditioning]
active = basic
[basic]
type = SMP
full = true
petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = ' asm lu NONZERO 2'
[]
[preferred_but_might_not_be_installed]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
[]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1E6
dt = 1E5
nl_abs_tol = 1E-10
[]
[Outputs]
exodus = true
[]
(modules/porous_flow/examples/tutorial/06_KT.i)
# Darcy flow with a tracer
[Mesh]
[annular]
type = AnnularMeshGenerator
nr = 10
rmin = 1.0
rmax = 10
growth_r = 1.4
nt = 4
dmin = 0
dmax = 90
[]
[make3D]
type = MeshExtruderGenerator
extrusion_vector = '0 0 12'
num_layers = 3
bottom_sideset = 'bottom'
top_sideset = 'top'
input = annular
[]
[shift_down]
type = TransformGenerator
transform = TRANSLATE
vector_value = '0 0 -6'
input = make3D
[]
[aquifer]
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 0 -2'
top_right = '10 10 2'
input = shift_down
[]
[injection_area]
type = ParsedGenerateSideset
combinatorial_geometry = 'x*x+y*y<1.01'
included_subdomain_ids = 1
new_sideset_name = 'injection_area'
input = 'aquifer'
[]
[rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caps aquifer'
input = 'injection_area'
[]
[]
[GlobalParams]
PorousFlowDictator = dictator
[]
[Variables]
[porepressure]
[]
[tracer_concentration]
[]
[]
[ICs]
[tracer_concentration]
type = FunctionIC
function = '0.5*if(x*x+y*y<1.01,1,0)'
variable = tracer_concentration
[]
[]
[PorousFlowFullySaturated]
porepressure = porepressure
coupling_type = Hydro
gravity = '0 0 0'
fp = the_simple_fluid
mass_fraction_vars = tracer_concentration
stabilization = KT
flux_limiter_type = superbee
[]
[BCs]
[constant_injection_porepressure]
type = DirichletBC
variable = porepressure
value = 1E6
boundary = injection_area
[]
[constant_outer_porepressure]
type = DirichletBC
variable = porepressure
value = 0
boundary = rmax
[]
[injected_tracer]
type = DirichletBC
variable = tracer_concentration
value = 0.5
boundary = injection_area
[]
[]
[Modules]
[FluidProperties]
[the_simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 2E9
viscosity = 1.0E-3
density0 = 1000.0
[]
[]
[]
[Materials]
[porosity]
type = PorousFlowPorosity
porosity_zero = 0.1
[]
[permeability_aquifer]
type = PorousFlowPermeabilityConst
block = aquifer
permeability = '1E-14 0 0 0 1E-14 0 0 0 1E-14'
[]
[permeability_caps]
type = PorousFlowPermeabilityConst
block = caps
permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-16'
[]
[]
[Preconditioning]
active = basic
[basic]
type = SMP
full = true
petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = ' asm lu NONZERO 2'
[]
[preferred_but_might_not_be_installed]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
[]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1E6
dt = 1E5
nl_rel_tol = 1E-14
[]
[Outputs]
exodus = true
[]
(modules/porous_flow/examples/tutorial/10.i)
# Unsaturated Darcy-Richards flow without using an Action
[Mesh]
[annular]
type = AnnularMeshGenerator
nr = 10
rmin = 1.0
rmax = 10
growth_r = 1.4
nt = 4
dmin = 0
dmax = 90
[]
[make3D]
input = annular
type = MeshExtruderGenerator
extrusion_vector = '0 0 12'
num_layers = 3
bottom_sideset = 'bottom'
top_sideset = 'top'
[]
[shift_down]
type = TransformGenerator
transform = TRANSLATE
vector_value = '0 0 -6'
input = make3D
[]
[aquifer]
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 0 -2'
top_right = '10 10 2'
input = shift_down
[]
[injection_area]
type = ParsedGenerateSideset
combinatorial_geometry = 'x*x+y*y<1.01'
included_subdomain_ids = 1
new_sideset_name = 'injection_area'
input = 'aquifer'
[]
[rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caps aquifer'
input = 'injection_area'
[]
[]
[UserObjects]
[dictator]
type = PorousFlowDictator
porous_flow_vars = pp
number_fluid_phases = 1
number_fluid_components = 1
[]
[pc]
type = PorousFlowCapillaryPressureVG
alpha = 1E-6
m = 0.6
[]
[]
[GlobalParams]
PorousFlowDictator = dictator
[]
[Variables]
[pp]
[]
[]
[Kernels]
[time_derivative]
type = PorousFlowMassTimeDerivative
variable = pp
[]
[flux]
type = PorousFlowAdvectiveFlux
variable = pp
gravity = '0 0 0'
[]
[]
[AuxVariables]
[sat]
family = MONOMIAL
order = CONSTANT
[]
[]
[AuxKernels]
[saturation]
type = PorousFlowPropertyAux
variable = sat
property = saturation
[]
[]
[BCs]
[production]
type = PorousFlowSink
variable = pp
fluid_phase = 0
flux_function = 1E-2
use_relperm = true
boundary = injection_area
[]
[]
[Modules]
[FluidProperties]
[the_simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 2E9
viscosity = 1.0E-3
density0 = 1000.0
[]
[]
[]
[Materials]
[porosity]
type = PorousFlowPorosity
porosity_zero = 0.1
[]
[permeability_aquifer]
type = PorousFlowPermeabilityConst
block = aquifer
permeability = '1E-14 0 0 0 1E-14 0 0 0 1E-14'
[]
[permeability_caps]
type = PorousFlowPermeabilityConst
block = caps
permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-16'
[]
[saturation_calculator]
type = PorousFlow1PhaseP
porepressure = pp
capillary_pressure = pc
[]
[temperature]
type = PorousFlowTemperature
temperature = 293
[]
[massfrac]
type = PorousFlowMassFraction
[]
[simple_fluid]
type = PorousFlowSingleComponentFluid
fp = the_simple_fluid
phase = 0
[]
[relperm]
type = PorousFlowRelativePermeabilityCorey
n = 3
s_res = 0.1
sum_s_res = 0.1
phase = 0
[]
[]
[Preconditioning]
active = basic
[basic]
type = SMP
full = true
petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = ' asm lu NONZERO 2'
[]
[preferred_but_might_not_be_installed]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
[]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1E6
dt = 1E5
nl_abs_tol = 1E-7
[]
[Outputs]
exodus = true
[]
(modules/porous_flow/examples/tutorial/08.i)
# Unsaturated Darcy-Richards flow
[Mesh]
[annular]
type = AnnularMeshGenerator
nr = 10
rmin = 1.0
rmax = 10
growth_r = 1.4
nt = 4
dmin = 0
dmax = 90
[]
[make3D]
input = annular
type = MeshExtruderGenerator
extrusion_vector = '0 0 12'
num_layers = 3
bottom_sideset = 'bottom'
top_sideset = 'top'
[]
[shift_down]
type = TransformGenerator
transform = TRANSLATE
vector_value = '0 0 -6'
input = make3D
[]
[aquifer]
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 0 -2'
top_right = '10 10 2'
input = shift_down
[]
[injection_area]
type = ParsedGenerateSideset
combinatorial_geometry = 'x*x+y*y<1.01'
included_subdomain_ids = 1
new_sideset_name = 'injection_area'
input = 'aquifer'
[]
[rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caps aquifer'
input = 'injection_area'
[]
[]
[GlobalParams]
PorousFlowDictator = dictator
[]
[Variables]
[porepressure]
[]
[]
[PorousFlowUnsaturated]
porepressure = porepressure
coupling_type = Hydro
gravity = '0 0 0'
fp = the_simple_fluid
relative_permeability_exponent = 3
relative_permeability_type = Corey
residual_saturation = 0.1
van_genuchten_alpha = 1E-6
van_genuchten_m = 0.6
[]
[BCs]
[production]
type = PorousFlowSink
variable = porepressure
fluid_phase = 0
flux_function = 1E-2
use_relperm = true
boundary = injection_area
[]
[]
[Modules]
[FluidProperties]
[the_simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 2E9
viscosity = 1.0E-3
density0 = 1000.0
[]
[]
[]
[Materials]
[porosity]
type = PorousFlowPorosity
porosity_zero = 0.1
[]
[permeability_aquifer]
type = PorousFlowPermeabilityConst
block = aquifer
permeability = '1E-14 0 0 0 1E-14 0 0 0 1E-14'
[]
[permeability_caps]
type = PorousFlowPermeabilityConst
block = caps
permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-16'
[]
[]
[Preconditioning]
active = basic
[basic]
type = SMP
full = true
petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = ' asm lu NONZERO 2'
[]
[preferred_but_might_not_be_installed]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
[]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1E6
dt = 1E5
nl_abs_tol = 1E-7
[]
[Outputs]
exodus = true
[]
(test/tests/meshgenerators/fancy_extruder_generator/fancy_extruder_then_parsed_gen_sideset.i)
[Mesh]
[file]
type = CartesianMeshGenerator
dim = 2
dx = '1 1 1 1'
dy = '1 1'
subdomain_id = '1 2 3 4
1 2 3 4'
[]
[extrude]
type = FancyExtruderGenerator
direction = '0 0 1'
heights = '1 1 1'
num_layers = '1 1 1'
input = file
[]
[add_side]
type = ParsedGenerateSideset
combinatorial_geometry = '2 > 1'
new_sideset_name = new_s
included_subdomain_ids = 1
included_neighbor_ids = 2
input = extrude
[]
[]
(modules/porous_flow/examples/tutorial/05.i)
# Darcy flow with heat advection and conduction, using Water97 properties
[Mesh]
[annular]
type = AnnularMeshGenerator
nr = 10
rmin = 1.0
rmax = 10
growth_r = 1.4
nt = 4
dmin = 0
dmax = 90
[]
[make3D]
type = MeshExtruderGenerator
extrusion_vector = '0 0 12'
num_layers = 3
bottom_sideset = 'bottom'
top_sideset = 'top'
input = annular
[]
[shift_down]
type = TransformGenerator
transform = TRANSLATE
vector_value = '0 0 -6'
input = make3D
[]
[aquifer]
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 0 -2'
top_right = '10 10 2'
input = shift_down
[]
[injection_area]
type = ParsedGenerateSideset
combinatorial_geometry = 'x*x+y*y<1.01'
included_subdomain_ids = 1
new_sideset_name = 'injection_area'
input = 'aquifer'
[]
[rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caps aquifer'
input = 'injection_area'
[]
[]
[GlobalParams]
PorousFlowDictator = dictator
[]
[Variables]
[porepressure]
initial_condition = 1E6
[]
[temperature]
initial_condition = 313
scaling = 1E-8
[]
[]
[PorousFlowBasicTHM]
porepressure = porepressure
temperature = temperature
coupling_type = ThermoHydro
gravity = '0 0 0'
fp = the_simple_fluid
[]
[BCs]
[constant_injection_porepressure]
type = DirichletBC
variable = porepressure
value = 2E6
boundary = injection_area
[]
[constant_injection_temperature]
type = DirichletBC
variable = temperature
value = 333
boundary = injection_area
[]
[]
[Modules]
[FluidProperties]
[the_simple_fluid]
type = Water97FluidProperties
[]
[]
[]
[Materials]
[porosity]
type = PorousFlowPorosity
porosity_zero = 0.1
[]
[biot_modulus]
type = PorousFlowConstantBiotModulus
biot_coefficient = 0.8
solid_bulk_compliance = 2E-7
fluid_bulk_modulus = 1E7
[]
[permeability_aquifer]
type = PorousFlowPermeabilityConst
block = aquifer
permeability = '1E-14 0 0 0 1E-14 0 0 0 1E-14'
[]
[permeability_caps]
type = PorousFlowPermeabilityConst
block = caps
permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-16'
[]
[thermal_expansion]
type = PorousFlowConstantThermalExpansionCoefficient
biot_coefficient = 0.8
drained_coefficient = 0.003
fluid_coefficient = 0.0002
[]
[rock_internal_energy]
type = PorousFlowMatrixInternalEnergy
density = 2500.0
specific_heat_capacity = 1200.0
[]
[thermal_conductivity]
type = PorousFlowThermalConductivityIdeal
dry_thermal_conductivity = '10 0 0 0 10 0 0 0 10'
block = 'caps aquifer'
[]
[]
[Preconditioning]
active = basic
[basic]
type = SMP
full = true
petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = ' asm lu NONZERO 2'
[]
[preferred_but_might_not_be_installed]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
[]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1E6
dt = 1E5
nl_abs_tol = 1E-10
[]
[Outputs]
exodus = true
[]
(test/tests/fvbcs/fv_neumannbc/fv_neumannbc.i)
[Mesh]
[mesh]
type = CartesianMeshGenerator
dim = 2
dx = '1 1'
dy = '1'
ix = '5 5'
iy = '5'
subdomain_id = '1 1'
[]
[internal_sideset]
type = ParsedGenerateSideset
combinatorial_geometry = 'x<1.01 & x>0.99'
included_subdomain_ids = 1
new_sideset_name = 'center'
input = 'mesh'
[]
[]
[Variables]
[u]
family = MONOMIAL
order = CONSTANT
fv = true
block = 1
[]
[]
[FVKernels]
[diff]
type = FVDiffusion
variable = u
coeff = 1
[]
[]
[FVBCs]
inactive = 'center'
[left]
type = FVDirichletBC
variable = u
boundary = left
value = 1
[]
[right]
type = FVNeumannBC
variable = u
boundary = right
value = 4
[]
# Internal center sideset, should cause erroring out
[center]
type = FVNeumannBC
variable = u
boundary = center
value = 0
[]
[]
[Executioner]
type = Steady
solve_type = 'Newton'
petsc_options_iname = '-pc_type'
petsc_options_value = 'lu'
[]
[Outputs]
exodus = true
[]
(modules/heat_conduction/test/tests/radiation_transfer_action/radiative_transfer_action_external_boundary_ray_tracing.i)
[Problem]
kernel_coverage_check = false
[]
[Mesh]
[cmg]
type = CartesianMeshGenerator
dim = 2
dx = '1 1.3 1.9'
ix = '3 3 3'
dy = '6'
iy = '9'
subdomain_id = '0 1 2'
[]
[inner_left]
type = SideSetsBetweenSubdomainsGenerator
input = cmg
primary_block = 0
paired_block = 1
new_boundary = 'inner_left'
[]
[inner_right]
type = SideSetsBetweenSubdomainsGenerator
input = inner_left
primary_block = 2
paired_block = 1
new_boundary = 'inner_right'
[]
[inner_top]
type = ParsedGenerateSideset
combinatorial_geometry = 'abs(y - 6) < 1e-10'
normal = '0 1 0'
included_subdomain_ids = 1
new_sideset_name = 'inner_top'
input = 'inner_right'
[]
[inner_bottom]
type = ParsedGenerateSideset
combinatorial_geometry = 'abs(y) < 1e-10'
normal = '0 -1 0'
included_subdomain_ids = 1
new_sideset_name = 'inner_bottom'
input = 'inner_top'
[]
[rename]
type = RenameBlockGenerator
old_block_id = '2'
new_block_id = '0'
input = inner_bottom
[]
[]
[Variables]
[temperature]
block = 0
[]
[]
[Kernels]
[heat_conduction]
type = HeatConduction
variable = temperature
block = 0
diffusion_coefficient = 5
[]
[]
[GrayDiffuseRadiation]
[cavity]
boundary = '4 5 6 7'
emissivity = '0.9 0.8 0.4 1'
n_patches = '2 2 2 3'
partitioners = 'centroid centroid centroid centroid'
centroid_partitioner_directions = 'x y y x'
temperature = temperature
adiabatic_boundary = '7'
fixed_temperature_boundary = '6'
fixed_boundary_temperatures = '800'
view_factor_calculator = ray_tracing
[]
[]
[BCs]
[left]
type = DirichletBC
variable = temperature
boundary = left
value = 1000
[]
[right]
type = DirichletBC
variable = temperature
boundary = right
value = 300
[]
[]
[Postprocessors]
[average_T_inner_right]
type = SideAverageValue
variable = temperature
boundary = inner_right
[]
[]
[Executioner]
type = Steady
[]
[Outputs]
exodus = true
[]
(modules/porous_flow/examples/tutorial/00_2D.i)
# Creates the mesh for the remainder of the tutorial
[Mesh]
[gen]
type = GeneratedMeshGenerator
dim = 2
nx = 10
xmin = 1.0
xmax = 10
bias_x = 1.4
ny = 3
ymin = -6
ymax = 6
[]
[aquifer]
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 -2 0'
top_right = '10 2 0'
input = gen
[]
[injection_area]
type = ParsedGenerateSideset
combinatorial_geometry = 'x<1.0001'
included_subdomain_ids = 1
new_sideset_name = 'injection_area'
input = 'aquifer'
[]
[rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caps aquifer'
input = 'injection_area'
[]
[]
[Variables]
[dummy_var]
[]
[]
[Kernels]
[dummy_diffusion]
type = Diffusion
variable = dummy_var
[]
[]
[Executioner]
type = Steady
[]
[Outputs]
file_base = 2D_mesh
exodus = true
[]
(modules/porous_flow/examples/tutorial/07.i)
# Darcy flow with a tracer that precipitates causing mineralisation and porosity changes and permeability changes
[Mesh]
[annular]
type = AnnularMeshGenerator
nr = 10
rmin = 1.0
rmax = 10
growth_r = 1.4
nt = 4
dmin = 0
dmax = 90
[]
[make3D]
input = annular
type = MeshExtruderGenerator
extrusion_vector = '0 0 12'
num_layers = 3
bottom_sideset = 'bottom'
top_sideset = 'top'
[]
[shift_down]
type = TransformGenerator
transform = TRANSLATE
vector_value = '0 0 -6'
input = make3D
[]
[aquifer]
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 0 -2'
top_right = '10 10 2'
input = shift_down
[]
[injection_area]
type = ParsedGenerateSideset
combinatorial_geometry = 'x*x+y*y<1.01'
included_subdomain_ids = 1
new_sideset_name = 'injection_area'
input = 'aquifer'
[]
[rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caps aquifer'
input = 'injection_area'
[]
[]
[GlobalParams]
PorousFlowDictator = dictator
[]
[Variables]
[porepressure]
[]
[tracer_concentration]
[]
[]
[PorousFlowFullySaturated]
porepressure = porepressure
coupling_type = Hydro
gravity = '0 0 0'
fp = the_simple_fluid
mass_fraction_vars = tracer_concentration
number_aqueous_kinetic = 1
temperature = 283.0
stabilization = none # Note to reader: try this with other stabilization and compare the results
[]
[AuxVariables]
[eqm_k]
initial_condition = 0.1
[]
[mineral_conc]
family = MONOMIAL
order = CONSTANT
[]
[initial_and_reference_conc]
initial_condition = 0
[]
[porosity]
family = MONOMIAL
order = CONSTANT
[]
[permeability]
family = MONOMIAL
order = CONSTANT
[]
[]
[AuxKernels]
[mineral_conc]
type = PorousFlowPropertyAux
property = mineral_concentration
mineral_species = 0
variable = mineral_conc
[]
[porosity]
type = PorousFlowPropertyAux
property = porosity
variable = porosity
[]
[permeability]
type = PorousFlowPropertyAux
property = permeability
column = 0
row = 0
variable = permeability
[]
[]
[Kernels]
[precipitation_dissolution]
type = PorousFlowPreDis
mineral_density = 1000.0
stoichiometry = 1
variable = tracer_concentration
[]
[]
[BCs]
[constant_injection_of_tracer]
type = PorousFlowSink
variable = tracer_concentration
flux_function = -5E-3
boundary = injection_area
[]
[constant_outer_porepressure]
type = DirichletBC
variable = porepressure
value = 0
boundary = rmax
[]
[]
[Modules]
[FluidProperties]
[the_simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 2E9
viscosity = 1.0E-3
density0 = 1000.0
[]
[]
[]
[Materials]
[porosity_mat]
type = PorousFlowPorosity
porosity_zero = 0.1
chemical = true
initial_mineral_concentrations = initial_and_reference_conc
reference_chemistry = initial_and_reference_conc
[]
[permeability_aquifer]
type = PorousFlowPermeabilityKozenyCarman
block = aquifer
k0 = 1E-14
m = 2
n = 3
phi0 = 0.1
poroperm_function = kozeny_carman_phi0
[]
[permeability_caps]
type = PorousFlowPermeabilityKozenyCarman
block = caps
k0 = 1E-15
k_anisotropy = '1 0 0 0 1 0 0 0 0.1'
m = 2
n = 3
phi0 = 0.1
poroperm_function = kozeny_carman_phi0
[]
[precipitation_dissolution_mat]
type = PorousFlowAqueousPreDisChemistry
reference_temperature = 283.0
activation_energy = 1 # irrelevant because T=Tref
equilibrium_constants = eqm_k # equilibrium tracer concentration
kinetic_rate_constant = 1E-8
molar_volume = 1
num_reactions = 1
primary_activity_coefficients = 1
primary_concentrations = tracer_concentration
reactions = 1
specific_reactive_surface_area = 1
[]
[mineral_concentration]
type = PorousFlowAqueousPreDisMineral
[]
[]
[Preconditioning]
active = basic
[basic]
type = SMP
full = true
petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = ' asm lu NONZERO 2'
[]
[preferred_but_might_not_be_installed]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
[]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1E6
dt = 1E5
nl_abs_tol = 1E-10
[]
[Outputs]
exodus = true
[]
(modules/porous_flow/examples/tutorial/01.i)
# Darcy flow
[Mesh]
[annular]
type = AnnularMeshGenerator
nr = 10
rmin = 1.0
rmax = 10
growth_r = 1.4
nt = 4
dmin = 0
dmax = 90
[]
[make3D]
type = MeshExtruderGenerator
extrusion_vector = '0 0 12'
num_layers = 3
bottom_sideset = 'bottom'
top_sideset = 'top'
input = annular
[]
[shift_down]
type = TransformGenerator
transform = TRANSLATE
vector_value = '0 0 -6'
input = make3D
[]
[aquifer]
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 0 -2'
top_right = '10 10 2'
input = shift_down
[]
[injection_area]
type = ParsedGenerateSideset
combinatorial_geometry = 'x*x+y*y<1.01'
included_subdomain_ids = 1
new_sideset_name = 'injection_area'
input = 'aquifer'
[]
[rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caps aquifer'
input = 'injection_area'
[]
[]
[GlobalParams]
PorousFlowDictator = dictator
[]
[Variables]
[porepressure]
[]
[]
[PorousFlowBasicTHM]
porepressure = porepressure
coupling_type = Hydro
gravity = '0 0 0'
fp = the_simple_fluid
[]
[BCs]
[constant_injection_porepressure]
type = DirichletBC
variable = porepressure
value = 1E6
boundary = injection_area
[]
[]
[Modules]
[FluidProperties]
[the_simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 2E9
viscosity = 1.0E-3
density0 = 1000.0
[]
[]
[]
[Materials]
[porosity]
type = PorousFlowPorosity
porosity_zero = 0.1
[]
[biot_modulus]
type = PorousFlowConstantBiotModulus
biot_coefficient = 0.8
solid_bulk_compliance = 2E-7
fluid_bulk_modulus = 1E7
[]
[permeability_aquifer]
type = PorousFlowPermeabilityConst
block = aquifer
permeability = '1E-14 0 0 0 1E-14 0 0 0 1E-14'
[]
[permeability_caps]
type = PorousFlowPermeabilityConst
block = caps
permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-16'
[]
[]
[Preconditioning]
active = basic
[basic]
type = SMP
full = true
[]
[preferred_but_might_not_be_installed]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
[]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1E6
dt = 1E5
nl_abs_tol = 1E-13
[]
[Outputs]
exodus = true
[]
(modules/heat_conduction/test/tests/view_factors_symmetry/cavity_with_pillars.i)
[Mesh]
[cartesian]
type = CartesianMeshGenerator
dim = 3
dx = '0.5 0.5 0.5 0.5 0.5 0.5'
dy = '0.5 0.75 0.5'
dz = '1.5 0.5'
subdomain_id = '
1 1 1 1 1 1
1 2 1 1 2 1
1 1 1 1 1 1
1 1 1 1 1 1
1 1 1 1 1 1
1 1 1 1 1 1
'
[]
[add_obstruction]
type = SideSetsBetweenSubdomainsGenerator
primary_block = 2
paired_block = 1
new_boundary = obstruction
input = cartesian
[]
[add_new_back]
type = ParsedGenerateSideset
combinatorial_geometry = 'abs(z) < 1e-10'
included_subdomain_ids = '1'
normal = '0 0 -1'
new_sideset_name = back_2
input = add_obstruction
[]
[]
[UserObjects]
[view_factor_study]
type = ViewFactorRayStudy
execute_on = initial
boundary = 'left right top bottom front back_2 obstruction'
face_order = FOURTH
[]
[view_factor]
type = RayTracingViewFactor
boundary = 'left right top bottom front back_2 obstruction'
execute_on = INITIAL
normalize_view_factor = false
ray_study_name = view_factor_study
[]
[]
[RayBCs/viewfactor]
type = ViewFactorRayBC
boundary = 'left right top bottom front back_2 obstruction'
[]
[Postprocessors]
[left_right]
type = ViewFactorPP
from_boundary = left
to_boundary = right
view_factor_object_name = view_factor
[]
[]
[Problem]
solve = false
[]
[Executioner]
type = Steady
[]
[Outputs]
csv = true
[]
(modules/heat_conduction/test/tests/radiative_bcs/radiative_bc_cyl.i)
#
# Thin cylindrical shell with very high thermal conductivity
# so that temperature is almost uniform at 500 K. Radiative
# boundary conditions is applied. Heat flux out of boundary
# 'right' should be 3723.36; this is approached as the mesh
# is refined
#
[Mesh]
type = MeshGeneratorMesh
[./cartesian]
type = CartesianMeshGenerator
dim = 2
dx = '1 1'
ix = '1 10'
dy = '1 1'
subdomain_id = '1 2 1 2'
[../]
[./remove_1]
type = BlockDeletionGenerator
block = 1
input = cartesian
[../]
[./readd_left]
type = ParsedGenerateSideset
combinatorial_geometry = 'abs(x - 1) < 1e-4'
new_sideset_name = left
input = remove_1
[../]
[]
[Problem]
coord_type = RZ
[]
[Variables]
[./temp]
initial_condition = 800.0
[../]
[]
[Kernels]
[./heat]
type = HeatConduction
variable = temp
[../]
[]
[BCs]
[./lefttemp]
type = DirichletBC
boundary = left
variable = temp
value = 800
[../]
[./radiative_bc]
type = InfiniteCylinderRadiativeBC
boundary = right
variable = temp
boundary_radius = 2
boundary_emissivity = 0.2
cylinder_radius = 3
cylinder_emissivity = 0.7
Tinfinity = 500
[../]
[]
[Materials]
[./density]
type = GenericConstantMaterial
prop_names = 'density thermal_conductivity'
prop_values = '1 1.0e5'
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Steady
petsc_options = '-snes_converged_reason'
line_search = none
nl_rel_tol = 1e-6
nl_abs_tol = 1e-7
[]
[Postprocessors]
[./right]
type = SideFluxAverage
variable = temp
boundary = right
diffusivity = thermal_conductivity
[../]
[./min_temp]
type = ElementExtremeValue
variable = temp
value_type = min
[../]
[./max_temp]
type = ElementExtremeValue
variable = temp
value_type = max
[../]
[]
[Outputs]
csv = true
[]
(modules/porous_flow/examples/tutorial/06.i)
# Darcy flow with a tracer
[Mesh]
[annular]
type = AnnularMeshGenerator
nr = 10
rmin = 1.0
rmax = 10
growth_r = 1.4
nt = 4
dmin = 0
dmax = 90
[]
[make3D]
type = MeshExtruderGenerator
extrusion_vector = '0 0 12'
num_layers = 3
bottom_sideset = 'bottom'
top_sideset = 'top'
input = annular
[]
[shift_down]
type = TransformGenerator
transform = TRANSLATE
vector_value = '0 0 -6'
input = make3D
[]
[aquifer]
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 0 -2'
top_right = '10 10 2'
input = shift_down
[]
[injection_area]
type = ParsedGenerateSideset
combinatorial_geometry = 'x*x+y*y<1.01'
included_subdomain_ids = 1
new_sideset_name = 'injection_area'
input = 'aquifer'
[]
[rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caps aquifer'
input = 'injection_area'
[]
[]
[GlobalParams]
PorousFlowDictator = dictator
[]
[Variables]
[porepressure]
[]
[tracer_concentration]
[]
[]
[ICs]
[tracer_concentration]
type = FunctionIC
function = '0.5*if(x*x+y*y<1.01,1,0)'
variable = tracer_concentration
[]
[]
[PorousFlowFullySaturated]
porepressure = porepressure
coupling_type = Hydro
gravity = '0 0 0'
fp = the_simple_fluid
mass_fraction_vars = tracer_concentration
stabilization = none # Note to reader: 06_KT.i uses KT stabilization - compare the results
[]
[BCs]
[constant_injection_porepressure]
type = DirichletBC
variable = porepressure
value = 1E6
boundary = injection_area
[]
[constant_outer_porepressure]
type = DirichletBC
variable = porepressure
value = 0
boundary = rmax
[]
[injected_tracer]
type = DirichletBC
variable = tracer_concentration
value = 0.5
boundary = injection_area
[]
[]
[Modules]
[FluidProperties]
[the_simple_fluid]
type = SimpleFluidProperties
bulk_modulus = 2E9
viscosity = 1.0E-3
density0 = 1000.0
[]
[]
[]
[Materials]
[porosity]
type = PorousFlowPorosity
porosity_zero = 0.1
[]
[permeability_aquifer]
type = PorousFlowPermeabilityConst
block = aquifer
permeability = '1E-14 0 0 0 1E-14 0 0 0 1E-14'
[]
[permeability_caps]
type = PorousFlowPermeabilityConst
block = caps
permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-16'
[]
[]
[Preconditioning]
active = basic
[basic]
type = SMP
full = true
petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = ' asm lu NONZERO 2'
[]
[preferred_but_might_not_be_installed]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
[]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1E6
dt = 1E5
nl_rel_tol = 1E-14
[]
[Outputs]
exodus = true
[]
(modules/porous_flow/examples/groundwater/ex02_steady_state.i)
# Steady-state groundwater model. See groundwater_models.md for a detailed description
[Mesh]
[basic_mesh]
# mesh create by external program: lies within -500<=x<=500 and -200<=y<=200, with varying z
type = FileMeshGenerator
file = ex02_mesh.e
[]
[name_blocks]
type = RenameBlockGenerator
input = basic_mesh
old_block_id = '2 3 4'
new_block_name = 'bot_aquifer aquitard top_aquifer'
[]
[zmax]
type = SideSetsFromNormalsGenerator
input = name_blocks
new_boundary = zmax
normals = '0 0 1'
[]
[xmin_bot_aquifer]
type = ParsedGenerateSideset
input = zmax
included_subdomain_ids = 2
normal = '-1 0 0'
combinatorial_geometry = 'x <= -500.0'
new_sideset_name = xmin_bot_aquifer
[]
[]
[GlobalParams]
PorousFlowDictator = dictator
[]
[Variables]
[pp]
[]
[]
[ICs]
[pp]
type = FunctionIC
variable = pp
function = initial_pp
[]
[]
[BCs]
[rainfall_recharge]
type = PorousFlowSink
boundary = zmax
variable = pp
flux_function = -1E-6 # recharge of 0.1mm/day = 1E-4m3/m2/day = 0.1kg/m2/day ~ 1E-6kg/m2/s
[]
[evapotranspiration]
type = PorousFlowHalfCubicSink
boundary = zmax
variable = pp
center = 0.0
cutoff = -5E4 # roots of depth 5m. 5m of water = 5E4 Pa
use_mobility = true
fluid_phase = 0
# Assume pan evaporation of 4mm/day = 4E-3m3/m2/day = 4kg/m2/day ~ 4E-5kg/m2/s
# Assume that if permeability was 1E-10m^2 and water table at topography then ET acts as pan strength
# Because use_mobility = true, then 4E-5 = maximum_flux = max * perm * density / visc = max * 1E-4, so max = 40
max = 40
[]
[]
[DiracKernels]
[river]
type = PorousFlowPolyLineSink
SumQuantityUO = baseflow
point_file = ex02_river.bh
# Assume a perennial river.
# Assume the river has an incision depth of 1m and a stage height of 1.5m, and these are constant in time and uniform over the whole model. Hence, if groundwater head is 0.5m (5000Pa) there will be no baseflow and leakage.
p_or_t_vals = '-999995000 5000 1000005000'
# Assume the riverbed conductance, k_zz*density*river_segment_length*river_width/riverbed_thickness/viscosity = 1E-6*river_segment_length kg/Pa/s
fluxes = '-1E3 0 1E3'
variable = pp
[]
[]
[Functions]
[initial_pp]
type = SolutionFunction
scale_factor = 1E4
from_variable = cosflow_depth
solution = initial_mesh
[]
[baseflow_rate]
type = ParsedFunction
vars = 'baseflow_kg dt'
vals = 'baseflow_kg dt'
value = 'baseflow_kg / dt * 24.0 * 3600.0 / 400.0'
[]
[]
[PorousFlowUnsaturated]
fp = simple_fluid
porepressure = pp
[]
[Modules]
[FluidProperties]
[simple_fluid]
type = SimpleFluidProperties
[]
[]
[]
[Materials]
[porosity_everywhere]
type = PorousFlowPorosityConst
porosity = 0.05
[]
[permeability_aquifers]
type = PorousFlowPermeabilityConst
block = 'top_aquifer bot_aquifer'
permeability = '1E-12 0 0 0 1E-12 0 0 0 1E-13'
[]
[permeability_aquitard]
type = PorousFlowPermeabilityConst
block = aquitard
permeability = '1E-16 0 0 0 1E-16 0 0 0 1E-17'
[]
[]
[UserObjects]
[initial_mesh]
type = SolutionUserObject
execute_on = INITIAL
mesh = ex02_mesh.e
timestep = LATEST
system_variables = cosflow_depth
[]
[baseflow]
type = PorousFlowSumQuantity
[]
[]
[Postprocessors]
[baseflow_kg]
type = PorousFlowPlotQuantity
uo = baseflow
outputs = 'none'
[]
[dt]
type = TimestepSize
outputs = 'none'
[]
[baseflow_l_per_m_per_day]
type = FunctionValuePostprocessor
function = baseflow_rate
[]
[]
[Preconditioning]
[smp]
type = SMP
full = true
# following 2 lines are not mandatory, but illustrate a popular preconditioner choice in groundwater models
petsc_options_iname = '-pc_type -sub_pc_type -pc_asm_overlap'
petsc_options_value = ' asm ilu 2 '
[]
[]
[Executioner]
type = Transient
solve_type = Newton
dt = 1E6
[TimeStepper]
type = FunctionDT
function = 'max(1E6, t)'
[]
end_time = 1E12
nl_abs_tol = 1E-13
[]
[Outputs]
print_linear_residuals = false
[ex]
type = Exodus
execute_on = final
[]
[csv]
type = CSV
[]
[]
(modules/porous_flow/examples/tutorial/11_2D.i)
# Two-phase borehole injection problem in RZ coordinates
[Mesh]
[gen]
type = GeneratedMeshGenerator
dim = 2
nx = 10
xmin = 1.0
xmax = 10
bias_x = 1.4
ny = 3
ymin = -6
ymax = 6
[]
[aquifer]
input = gen
type = SubdomainBoundingBoxGenerator
block_id = 1
bottom_left = '0 -2 0'
top_right = '10 2 0'
[]
[injection_area]
type = ParsedGenerateSideset
combinatorial_geometry = 'x<1.0001'
included_subdomain_ids = 1
new_sideset_name = 'injection_area'
input = 'aquifer'
[]
[rename]
type = RenameBlockGenerator
old_block_id = '0 1'
new_block_name = 'caps aquifer'
input = 'injection_area'
[]
[]
[Problem]
coord_type = RZ
[]
[UserObjects]
[dictator]
type = PorousFlowDictator
porous_flow_vars = 'pwater pgas T disp_r'
number_fluid_phases = 2
number_fluid_components = 2
[]
[pc]
type = PorousFlowCapillaryPressureVG
alpha = 1E-6
m = 0.6
[]
[]
[GlobalParams]
displacements = 'disp_r disp_z'
gravity = '0 0 0'
biot_coefficient = 1.0
PorousFlowDictator = dictator
[]
[Variables]
[pwater]
initial_condition = 20E6
[]
[pgas]
initial_condition = 20.1E6
[]
[T]
initial_condition = 330
scaling = 1E-5
[]
[disp_r]
scaling = 1E-5
[]
[]
[Kernels]
[mass_water_dot]
type = PorousFlowMassTimeDerivative
fluid_component = 0
use_displaced_mesh = false
variable = pwater
[]
[flux_water]
type = PorousFlowAdvectiveFlux
fluid_component = 0
use_displaced_mesh = false
variable = pwater
[]
[vol_strain_rate_water]
type = PorousFlowMassVolumetricExpansion
fluid_component = 0
use_displaced_mesh = false
variable = pwater
[]
[mass_co2_dot]
type = PorousFlowMassTimeDerivative
fluid_component = 1
use_displaced_mesh = false
variable = pgas
[]
[flux_co2]
type = PorousFlowAdvectiveFlux
fluid_component = 1
use_displaced_mesh = false
variable = pgas
[]
[vol_strain_rate_co2]
type = PorousFlowMassVolumetricExpansion
fluid_component = 1
use_displaced_mesh = false
variable = pgas
[]
[energy_dot]
type = PorousFlowEnergyTimeDerivative
use_displaced_mesh = false
variable = T
[]
[advection]
type = PorousFlowHeatAdvection
use_displaced_mesh = false
variable = T
[]
[conduction]
type = PorousFlowHeatConduction
use_displaced_mesh = false
variable = T
[]
[vol_strain_rate_heat]
type = PorousFlowHeatVolumetricExpansion
use_displaced_mesh = false
variable = T
[]
[grad_stress_r]
type = StressDivergenceRZTensors
temperature = T
variable = disp_r
eigenstrain_names = thermal_contribution
use_displaced_mesh = false
component = 0
[]
[poro_r]
type = PorousFlowEffectiveStressCoupling
variable = disp_r
use_displaced_mesh = false
component = 0
[]
[]
[AuxVariables]
[disp_z]
[]
[effective_fluid_pressure]
family = MONOMIAL
order = CONSTANT
[]
[mass_frac_phase0_species0]
initial_condition = 1 # all water in phase=0
[]
[mass_frac_phase1_species0]
initial_condition = 0 # no water in phase=1
[]
[sgas]
family = MONOMIAL
order = CONSTANT
[]
[swater]
family = MONOMIAL
order = CONSTANT
[]
[stress_rr]
family = MONOMIAL
order = CONSTANT
[]
[stress_tt]
family = MONOMIAL
order = CONSTANT
[]
[stress_zz]
family = MONOMIAL
order = CONSTANT
[]
[porosity]
family = MONOMIAL
order = CONSTANT
[]
[]
[AuxKernels]
[effective_fluid_pressure]
type = ParsedAux
args = 'pwater pgas swater sgas'
function = 'pwater * swater + pgas * sgas'
variable = effective_fluid_pressure
[]
[swater]
type = PorousFlowPropertyAux
variable = swater
property = saturation
phase = 0
execute_on = timestep_end
[]
[sgas]
type = PorousFlowPropertyAux
variable = sgas
property = saturation
phase = 1
execute_on = timestep_end
[]
[stress_rr_aux]
type = RankTwoAux
variable = stress_rr
rank_two_tensor = stress
index_i = 0
index_j = 0
[]
[stress_tt]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_tt
index_i = 2
index_j = 2
[]
[stress_zz]
type = RankTwoAux
rank_two_tensor = stress
variable = stress_zz
index_i = 1
index_j = 1
[]
[porosity]
type = PorousFlowPropertyAux
variable = porosity
property = porosity
execute_on = timestep_end
[]
[]
[BCs]
[pinned_top_bottom_r]
type = DirichletBC
variable = disp_r
value = 0
boundary = 'top bottom'
[]
[cavity_pressure_r]
type = Pressure
boundary = injection_area
variable = disp_r
component = 0
postprocessor = constrained_effective_fluid_pressure_at_wellbore
use_displaced_mesh = false
[]
[cold_co2]
type = DirichletBC
boundary = injection_area
variable = T
value = 290 # injection temperature
use_displaced_mesh = false
[]
[constant_co2_injection]
type = PorousFlowSink
boundary = injection_area
variable = pgas
fluid_phase = 1
flux_function = -1E-4
use_displaced_mesh = false
[]
[outer_water_removal]
type = PorousFlowPiecewiseLinearSink
boundary = right
variable = pwater
fluid_phase = 0
pt_vals = '0 1E9'
multipliers = '0 1E8'
PT_shift = 20E6
use_mobility = true
use_relperm = true
use_displaced_mesh = false
[]
[outer_co2_removal]
type = PorousFlowPiecewiseLinearSink
boundary = right
variable = pgas
fluid_phase = 1
pt_vals = '0 1E9'
multipliers = '0 1E8'
PT_shift = 20.1E6
use_mobility = true
use_relperm = true
use_displaced_mesh = false
[]
[]
[Modules]
[FluidProperties]
[true_water]
type = Water97FluidProperties
[]
[tabulated_water]
type = TabulatedFluidProperties
fp = true_water
temperature_min = 275
pressure_max = 1E8
fluid_property_file = water97_tabulated_11.csv
[]
[true_co2]
type = CO2FluidProperties
[]
[tabulated_co2]
type = TabulatedFluidProperties
fp = true_co2
temperature_min = 275
pressure_max = 1E8
fluid_property_file = co2_tabulated_11.csv
[]
[]
[]
[Materials]
[temperature]
type = PorousFlowTemperature
temperature = T
[]
[saturation_calculator]
type = PorousFlow2PhasePP
phase0_porepressure = pwater
phase1_porepressure = pgas
capillary_pressure = pc
[]
[massfrac]
type = PorousFlowMassFraction
mass_fraction_vars = 'mass_frac_phase0_species0 mass_frac_phase1_species0'
[]
[water]
type = PorousFlowSingleComponentFluid
fp = tabulated_water
phase = 0
[]
[co2]
type = PorousFlowSingleComponentFluid
fp = tabulated_co2
phase = 1
[]
[relperm_water]
type = PorousFlowRelativePermeabilityCorey
n = 4
s_res = 0.1
sum_s_res = 0.2
phase = 0
[]
[relperm_co2]
type = PorousFlowRelativePermeabilityBC
nw_phase = true
lambda = 2
s_res = 0.1
sum_s_res = 0.2
phase = 1
[]
[porosity]
type = PorousFlowPorosity
fluid = true
mechanical = true
thermal = true
porosity_zero = 0.1
reference_temperature = 330
reference_porepressure = 20E6
thermal_expansion_coeff = 15E-6 # volumetric
solid_bulk = 8E9 # unimportant since biot = 1
[]
[permeability_aquifer]
type = PorousFlowPermeabilityKozenyCarman
block = aquifer
poroperm_function = kozeny_carman_phi0
phi0 = 0.1
n = 2
m = 2
k0 = 1E-12
[]
[permeability_caps]
type = PorousFlowPermeabilityKozenyCarman
block = caps
poroperm_function = kozeny_carman_phi0
phi0 = 0.1
n = 2
m = 2
k0 = 1E-15
k_anisotropy = '1 0 0 0 1 0 0 0 0.1'
[]
[rock_thermal_conductivity]
type = PorousFlowThermalConductivityIdeal
dry_thermal_conductivity = '2 0 0 0 2 0 0 0 2'
[]
[rock_internal_energy]
type = PorousFlowMatrixInternalEnergy
specific_heat_capacity = 1100
density = 2300
[]
[elasticity_tensor]
type = ComputeIsotropicElasticityTensor
youngs_modulus = 5E9
poissons_ratio = 0.0
[]
[strain]
type = ComputeAxisymmetricRZSmallStrain
eigenstrain_names = 'thermal_contribution initial_stress'
[]
[thermal_contribution]
type = ComputeThermalExpansionEigenstrain
temperature = T
thermal_expansion_coeff = 5E-6 # this is the linear thermal expansion coefficient
eigenstrain_name = thermal_contribution
stress_free_temperature = 330
[]
[initial_strain]
type = ComputeEigenstrainFromInitialStress
initial_stress = '20E6 0 0 0 20E6 0 0 0 20E6'
eigenstrain_name = initial_stress
[]
[stress]
type = ComputeLinearElasticStress
[]
[effective_fluid_pressure]
type = PorousFlowEffectiveFluidPressure
[]
[volumetric_strain]
type = PorousFlowVolumetricStrain
[]
[]
[Postprocessors]
[effective_fluid_pressure_at_wellbore]
type = PointValue
variable = effective_fluid_pressure
point = '1 0 0'
execute_on = timestep_begin
use_displaced_mesh = false
[]
[constrained_effective_fluid_pressure_at_wellbore]
type = FunctionValuePostprocessor
function = constrain_effective_fluid_pressure
execute_on = timestep_begin
[]
[]
[Functions]
[constrain_effective_fluid_pressure]
type = ParsedFunction
vars = effective_fluid_pressure_at_wellbore
vals = effective_fluid_pressure_at_wellbore
value = 'max(effective_fluid_pressure_at_wellbore, 20E6)'
[]
[]
[Preconditioning]
active = basic
[basic]
type = SMP
full = true
petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
petsc_options_value = ' asm lu NONZERO 2'
[]
[preferred_but_might_not_be_installed]
type = SMP
full = true
petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
petsc_options_value = ' lu mumps'
[]
[]
[Executioner]
type = Transient
solve_type = Newton
end_time = 1E3
[TimeStepper]
type = IterationAdaptiveDT
dt = 1E3
growth_factor = 1.2
optimal_iterations = 10
[]
nl_abs_tol = 1E-7
[]
[Outputs]
exodus = true
[]
(test/tests/mesh_modifiers/parsed_sideset/parsed_sideset.i)
[Mesh]
[gen]
type = GeneratedMeshGenerator
dim = 3
nx = 3
ny = 3
nz = 3
xmax = 3
ymax = 3
zmax = 3
[]
[subdomains]
type = ParsedSubdomainMeshGenerator
input = gen
combinatorial_geometry = 'x < 1 & y > 1 & y < 2'
block_id = 1
[]
[sideset]
type = ParsedGenerateSideset
input = subdomains
combinatorial_geometry = 'z < 1'
included_subdomain_ids = '1'
normal = '1 0 0'
new_sideset_name = interior
[]
[]
# This input file is intended to be run with the "--mesh-only" option so
# no other sections are required
(test/tests/meshgenerators/parsed_generate_sideset/parsed_generate_sideset.i)
[Mesh]
[./gmg]
type = GeneratedMeshGenerator
dim = 3
nx = 3
ny = 3
nz = 3
xmax = 3
ymax = 3
zmax = 3
[]
[./subdomains]
type = ParsedSubdomainMeshGenerator
input = gmg
combinatorial_geometry = 'x < 1 & y > 1 & y < 2'
block_id = 1
[]
[./sideset]
type = ParsedGenerateSideset
input = subdomains
combinatorial_geometry = 'z < 1'
included_subdomain_ids = '1'
normal = '1 0 0'
new_sideset_name = interior
[]
[]
[Outputs]
exodus = true
[]
(modules/heat_conduction/test/tests/radiation_transfer_symmetry/cavity_with_pillars_symmetry_bc.i)
#
# inner_left: 8
# inner_top: 11
# inner_bottom: 10
# inner_front: 9
# back_2: 7
# obstruction: 6
#
[Mesh]
[cartesian]
type = CartesianMeshGenerator
dim = 3
dx = '0.4 0.5 0.5 0.5'
dy = '0.5 0.75 0.5'
dz = '1.5 0.5'
subdomain_id = '
3 1 1 1
3 1 2 1
3 1 1 1
3 1 1 1
3 1 1 1
3 1 1 1
'
[]
[add_obstruction]
type = SideSetsBetweenSubdomainsGenerator
primary_block = 2
paired_block = 1
new_boundary = obstruction
input = cartesian
[]
[add_new_back]
type = ParsedGenerateSideset
combinatorial_geometry = 'abs(z) < 1e-10'
included_subdomain_ids = '1'
normal = '0 0 -1'
new_sideset_name = back_2
input = add_obstruction
[]
[add_inner_left]
type = SideSetsBetweenSubdomainsGenerator
primary_block = 3
paired_block = 1
new_boundary = inner_left
input = add_new_back
[]
[add_inner_front]
type = ParsedGenerateSideset
combinatorial_geometry = 'abs(z - 2) < 1e-10'
included_subdomain_ids = '1'
normal = '0 0 1'
new_sideset_name = inner_front
input = add_inner_left
[]
[add_inner_bottom]
type = ParsedGenerateSideset
combinatorial_geometry = 'abs(y) < 1e-10'
included_subdomain_ids = '1'
normal = '0 -1 0'
new_sideset_name = inner_bottom
input = add_inner_front
[]
[add_inner_top]
type = ParsedGenerateSideset
combinatorial_geometry = 'abs(y - 1.75) < 1e-10'
included_subdomain_ids = '1'
normal = '0 1 0'
new_sideset_name = inner_top
input = add_inner_bottom
[]
[]
[Problem]
kernel_coverage_check = false
[]
[Variables]
[temperature]
block = '2 3'
initial_condition = 300
[]
[]
[Kernels]
[conduction]
type = HeatConduction
variable = temperature
block = '2 3'
diffusion_coefficient = 1
[]
[source]
type = BodyForce
variable = temperature
value = 1000
block = '2'
[]
[]
[BCs]
[convective]
type = CoupledConvectiveHeatFluxBC
variable = temperature
T_infinity = 300
htc = 50
boundary = 'left'
[]
[]
[GrayDiffuseRadiation]
[./cavity]
boundary = '6 7 8 9 10 11'
emissivity = '1 1 1 1 1 1'
n_patches = '1 1 1 1 1 1'
adiabatic_boundary = '7 9 10 11'
symmetry_boundary = '2'
partitioners = 'metis metis metis metis metis metis'
temperature = temperature
ray_tracing_face_order = SECOND
normalize_view_factor = false
[../]
[]
[Postprocessors]
[Tpv]
type = PointValue
variable = temperature
point = '0.3 0.5 0.5'
[]
[volume]
type = VolumePostprocessor
[]
[]
[Executioner]
type = Steady
petsc_options_iname = '-pc_type -pc_hypre_type'
petsc_options_value = 'hypre boomeramg'
[]
[Outputs]
exodus = true
[]