- contains_complete_historyFalseSet this flag to indicate that the values in all vectors declared by this VPP represent a time history (e.g. with each invocation, new values are added and old values are never removed). This changes the output so that only a single file is output and updated with each invocation
Default:False
C++ Type:bool
Controllable:No
Description:Set this flag to indicate that the values in all vectors declared by this VPP represent a time history (e.g. with each invocation, new values are added and old values are never removed). This changes the output so that only a single file is output and updated with each invocation
- grain_forceSpecify userobject that gives center of mass and volume of grains
C++ Type:UserObjectName
Controllable:No
Description:Specify userobject that gives center of mass and volume of grains
- parallel_typeREPLICATEDSet how the data is represented within the VectorPostprocessor (VPP); 'distributed' indicates that data within the VPP is distributed and no auto communication is performed, this setting will result in parallel output within the CSV output; 'replicated' indicates that the data within the VPP is correct on processor 0, the data will automatically be broadcast to all processors unless the '_auto_broadcast' param is set to false within the validParams function.
Default:REPLICATED
C++ Type:MooseEnum
Controllable:No
Description:Set how the data is represented within the VectorPostprocessor (VPP); 'distributed' indicates that data within the VPP is distributed and no auto communication is performed, this setting will result in parallel output within the CSV output; 'replicated' indicates that the data within the VPP is correct on processor 0, the data will automatically be broadcast to all processors unless the '_auto_broadcast' param is set to false within the validParams function.
GrainForcesPostprocessor
buildconstruction:Undocumented Class
The GrainForcesPostprocessor has not been documented. The content listed below should be used as a starting point for documenting the class, which includes the typical automatic documentation associated with a MooseObject; however, what is contained is ultimately determined by what is necessary to make the documentation clear for users.
Outputs the values from GrainForcesPostprocessor
Overview
Example Input File Syntax
Input Parameters
- allow_duplicate_execution_on_initialFalseIn the case where this UserObject is depended upon by an initial condition, allow it to be executed twice during the initial setup (once before the IC and again after mesh adaptivity (if applicable).
Default:False
C++ Type:bool
Controllable:No
Description:In the case where this UserObject is depended upon by an initial condition, allow it to be executed twice during the initial setup (once before the IC and again after mesh adaptivity (if applicable).
- execute_onTIMESTEP_ENDThe list of flag(s) indicating when this object should be executed. For a description of each flag, see https://mooseframework.inl.gov/source/interfaces/SetupInterface.html.
Default:TIMESTEP_END
C++ Type:ExecFlagEnum
Options:XFEM_MARK, FORWARD, ADJOINT, HOMOGENEOUS_FORWARD, ADJOINT_TIMESTEP_BEGIN, ADJOINT_TIMESTEP_END, NONE, INITIAL, LINEAR, LINEAR_CONVERGENCE, NONLINEAR, NONLINEAR_CONVERGENCE, POSTCHECK, TIMESTEP_END, TIMESTEP_BEGIN, MULTIAPP_FIXED_POINT_END, MULTIAPP_FIXED_POINT_BEGIN, MULTIAPP_FIXED_POINT_CONVERGENCE, FINAL, CUSTOM, TRANSFER
Controllable:No
Description:The list of flag(s) indicating when this object should be executed. For a description of each flag, see https://mooseframework.inl.gov/source/interfaces/SetupInterface.html.
- execution_order_group0Execution order groups are executed in increasing order (e.g., the lowest number is executed first). Note that negative group numbers may be used to execute groups before the default (0) group. Please refer to the user object documentation for ordering of user object execution within a group.
Default:0
C++ Type:int
Controllable:No
Description:Execution order groups are executed in increasing order (e.g., the lowest number is executed first). Note that negative group numbers may be used to execute groups before the default (0) group. Please refer to the user object documentation for ordering of user object execution within a group.
- force_postauxFalseForces the UserObject to be executed in POSTAUX
Default:False
C++ Type:bool
Controllable:No
Description:Forces the UserObject to be executed in POSTAUX
- force_preauxFalseForces the UserObject to be executed in PREAUX
Default:False
C++ Type:bool
Controllable:No
Description:Forces the UserObject to be executed in PREAUX
- force_preicFalseForces the UserObject to be executed in PREIC during initial setup
Default:False
C++ Type:bool
Controllable:No
Description:Forces the UserObject to be executed in PREIC during initial setup
Execution Scheduling Parameters
- control_tagsAdds user-defined labels for accessing object parameters via control logic.
C++ Type:std::vector<std::string>
Controllable:No
Description:Adds user-defined labels for accessing object parameters via control logic.
- enableTrueSet the enabled status of the MooseObject.
Default:True
C++ Type:bool
Controllable:Yes
Description:Set the enabled status of the MooseObject.
- outputsVector of output names where you would like to restrict the output of variables(s) associated with this object
C++ Type:std::vector<OutputName>
Controllable:No
Description:Vector of output names where you would like to restrict the output of variables(s) associated with this object
- use_displaced_meshFalseWhether or not this object should use the displaced mesh for computation. Note that in the case this is true but no displacements are provided in the Mesh block the undisplaced mesh will still be used.
Default:False
C++ Type:bool
Controllable:No
Description:Whether or not this object should use the displaced mesh for computation. Note that in the case this is true but no displacements are provided in the Mesh block the undisplaced mesh will still be used.
Advanced Parameters
- prop_getter_suffixAn optional suffix parameter that can be appended to any attempt to retrieve/get material properties. The suffix will be prepended with a '_' character.
C++ Type:MaterialPropertyName
Unit:(no unit assumed)
Controllable:No
Description:An optional suffix parameter that can be appended to any attempt to retrieve/get material properties. The suffix will be prepended with a '_' character.
- use_interpolated_stateFalseFor the old and older state use projected material properties interpolated at the quadrature points. To set up projection use the ProjectedStatefulMaterialStorageAction.
Default:False
C++ Type:bool
Controllable:No
Description:For the old and older state use projected material properties interpolated at the quadrature points. To set up projection use the ProjectedStatefulMaterialStorageAction.
Material Property Retrieval Parameters
Input Files
- (modules/phase_field/test/tests/rigidbodymotion/grain_motion2.i)
- (modules/phase_field/test/tests/rigidbodymotion/grain_appliedforcedensity.i)
- (modules/phase_field/examples/rigidbodymotion/grain_motion_GT.i)
- (modules/phase_field/examples/rigidbodymotion/AC_CH_advection_constforce_rect.i)
- (modules/phase_field/examples/rigidbodymotion/AC_CH_Multigrain.i)
- (modules/phase_field/test/tests/rigidbodymotion/grain_forcesum.i)
- (modules/phase_field/examples/rigidbodymotion/grain_forcedensity_ext.i)
- (modules/phase_field/test/tests/rigidbodymotion/grain_forcedensity.i)
- (modules/phase_field/test/tests/rigidbodymotion/grain_motion.i)
- (modules/phase_field/test/tests/rigidbodymotion/grain_maskedforce.i)
- (modules/phase_field/test/tests/rigidbodymotion/update_orientation.i)
- (modules/phase_field/test/tests/rigidbodymotion/polycrystal_action.i)
- (modules/phase_field/test/tests/rigidbodymotion/grain_motion_fauxGT.i)
- (modules/phase_field/test/tests/rigidbodymotion/update_orientation_verify.i)
(modules/phase_field/test/tests/rigidbodymotion/grain_motion2.i)
# test file for applyting advection term and observing rigid body motion of grains
[Mesh]
type = GeneratedMesh
dim = 2
nx = 25
ny = 15
nz = 0
xmax = 50
ymax = 25
zmax = 0
elem_type = QUAD4
[]
[Variables]
[./c]
order = FIRST
family = LAGRANGE
[../]
[./w]
order = FIRST
family = LAGRANGE
[../]
[./eta]
order = FIRST
family = LAGRANGE
[../]
[]
[AuxVariables]
[./vadvx]
order = CONSTANT
family = MONOMIAL
[../]
[./vadvy]
order = CONSTANT
family = MONOMIAL
[../]
[./unique_grains]
order = CONSTANT
family = MONOMIAL
[../]
[./centroids]
order = CONSTANT
family = MONOMIAL
[../]
[]
[Kernels]
[./c_res]
type = SplitCHParsed
variable = c
f_name = F
kappa_name = kappa_c
w = w
coupled_variables = eta
[../]
[./w_res]
type = SplitCHWRes
variable = w
mob_name = M
[../]
[./time]
type = CoupledTimeDerivative
variable = w
v = c
[../]
[./motion]
type = MultiGrainRigidBodyMotion
variable = w
c = c
v = eta
grain_tracker_object = grain_center
grain_force = grain_force
grain_volumes = grain_volumes
[../]
[./eta_dot]
type = TimeDerivative
variable = eta
[../]
[./vadv_eta]
type = SingleGrainRigidBodyMotion
variable = eta
c = c
v = eta
grain_tracker_object = grain_center
grain_force = grain_force
grain_volumes = grain_volumes
[../]
[./acint_eta]
type = ACInterface
variable = eta
mob_name = M
coupled_variables = c
kappa_name = kappa_eta
[../]
[./acbulk_eta]
type = AllenCahn
variable = eta
mob_name = M
f_name = F
coupled_variables = c
[../]
[]
[AuxKernels]
[./vadv_x]
type = GrainAdvectionAux
component = x
grain_tracker_object = grain_center
grain_force = grain_force
grain_volumes = grain_volumes
variable = vadvx
[../]
[./vadv_y]
type = GrainAdvectionAux
component = y
grain_tracker_object = grain_center
grain_force = grain_force
grain_volumes = grain_volumes
variable = vadvy
[../]
[./unique_grains]
type = FeatureFloodCountAux
variable = unique_grains
flood_counter = grain_center
field_display = UNIQUE_REGION
execute_on = 'initial timestep_begin'
[../]
[./centroids]
type = FeatureFloodCountAux
variable = centroids
execute_on = 'initial timestep_begin'
field_display = CENTROID
flood_counter = grain_center
[../]
[]
[Materials]
[./pfmobility]
type = GenericConstantMaterial
prop_names = 'M kappa_c kappa_eta'
prop_values = '5.0 2.0 0.1'
[../]
[./free_energy]
type = DerivativeParsedMaterial
coupled_variables = 'c eta'
constant_names = 'barr_height cv_eq'
constant_expressions = '0.1 1.0e-2'
expression = 16*barr_height*(c-cv_eq)^2*(1-cv_eq-c)^2+(c-eta)^2
derivative_order = 2
[../]
[]
[VectorPostprocessors]
[./forces]
type = GrainForcesPostprocessor
grain_force = grain_force
[../]
[./grain_volumes]
type = FeatureVolumeVectorPostprocessor
flood_counter = grain_center
execute_on = 'initial timestep_begin'
[../]
[]
[UserObjects]
[./grain_center]
type = FauxGrainTracker
variable = eta
outputs = none
compute_var_to_feature_map = true
execute_on = 'initial timestep_begin'
[../]
[./grain_force]
type = ConstantGrainForceAndTorque
execute_on = 'initial linear nonlinear'
force = '0.5 0.0 0.0 '
torque = '0.0 0.0 10.0 '
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
nl_max_its = 30
scheme = bdf2
solve_type = NEWTON
petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
petsc_options_value = 'asm 31 preonly lu 1'
l_max_its = 30
l_tol = 1.0e-4
nl_rel_tol = 1.0e-10
start_time = 0.0
dt = 0.5
num_steps = 1
[]
[Outputs]
exodus = true
[]
[ICs]
[./rect_c]
y2 = 20.0
y1 = 5.0
inside = 1.0
x2 = 30.0
variable = c
x1 = 10.0
type = BoundingBoxIC
[../]
[./rect_eta]
y2 = 20.0
y1 = 5.0
inside = 1.0
x2 = 30.0
variable = eta
x1 = 10.0
type = BoundingBoxIC
[../]
[]
(modules/phase_field/test/tests/rigidbodymotion/grain_appliedforcedensity.i)
# test file for showing grain motion due to applied force density on grains
[GlobalParams]
var_name_base = eta
op_num = 2
[]
[Mesh]
type = GeneratedMesh
dim = 2
nx = 25
ny = 10
nz = 0
xmax = 50
ymax = 25
zmax = 0
elem_type = QUAD4
[]
[Variables]
[./c]
order = FIRST
family = LAGRANGE
[./InitialCondition]
type = SpecifiedSmoothCircleIC
invalue = 1.0
outvalue = 0.1
int_width = 6.0
x_positions = '20.0 30.0 '
z_positions = '0.0 0.0 '
y_positions = '0.0 25.0 '
radii = '14.0 14.0'
3D_spheres = false
variable = c
[../]
[../]
[./w]
order = FIRST
family = LAGRANGE
[../]
[]
[Functions]
[./load]
type = ConstantFunction
value = 0.01
[../]
[]
[Kernels]
[./c_res]
type = SplitCHParsed
variable = c
f_name = F
kappa_name = kappa_c
w = w
[../]
[./w_res]
type = SplitCHWRes
variable = w
mob_name = M
[../]
[./time]
type = CoupledTimeDerivative
variable = w
v = c
[../]
[./motion]
type = MultiGrainRigidBodyMotion
variable = w
c = c
v = 'eta0 eta1'
grain_tracker_object = grain_center
grain_force = grain_force
grain_volumes = grain_volumes
[../]
[]
[Materials]
[./pfmobility]
type = GenericConstantMaterial
prop_names = 'M kappa_c kappa_eta'
prop_values = '5.0 2.0 0.1'
[../]
[./free_energy]
type = DerivativeParsedMaterial
property_name = F
coupled_variables = c
constant_names = 'barr_height cv_eq'
constant_expressions = '0.1 1.0e-2'
expression = 16*barr_height*(c-cv_eq)^2*(1-cv_eq-c)^2
derivative_order = 2
[../]
[./force_density_ext]
type = ExternalForceDensityMaterial
c = c
etas = 'eta0 eta1'
k = 1.0
force_y = load
[../]
[]
[AuxVariables]
[./eta0]
[../]
[./eta1]
[../]
[./bnds]
[../]
[]
[AuxKernels]
[./bnds]
type = BndsCalcAux
variable = bnds
var_name_base = eta
op_num = 2
v = 'eta0 eta1'
[../]
[]
[ICs]
[./ic_eta0]
int_width = 6.0
x1 = 20.0
y1 = 0.0
radius = 14.0
outvalue = 0.0
variable = eta0
invalue = 1.0
type = SmoothCircleIC
[../]
[./IC_eta1]
int_width = 6.0
x1 = 30.0
y1 = 25.0
radius = 14.0
outvalue = 0.0
variable = eta1
invalue = 1.0
type = SmoothCircleIC
[../]
[]
[VectorPostprocessors]
[./forces]
type = GrainForcesPostprocessor
grain_force = grain_force
[../]
[./grain_volumes]
type = FeatureVolumeVectorPostprocessor
flood_counter = grain_center
execute_on = 'initial timestep_begin'
[../]
[]
[UserObjects]
[./grain_center]
type = GrainTracker
outputs = none
compute_var_to_feature_map = true
execute_on = 'initial timestep_begin'
[../]
[./grain_force]
type = ComputeExternalGrainForceAndTorque
execute_on = 'linear nonlinear'
grain_data = grain_center
c = c
etas = 'eta0 eta1'
force_density = force_density_ext
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
scheme = bdf2
solve_type = PJFNK
petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
petsc_options_value = 'asm 31 preonly lu 1'
l_max_its = 30
l_tol = 1.0e-4
nl_rel_tol = 1.0e-10
start_time = 0.0
num_steps = 1
dt = 0.1
[]
[Outputs]
exodus = true
csv = true
[]
(modules/phase_field/examples/rigidbodymotion/grain_motion_GT.i)
# example showing grain motion due to applied force density on grains
[GlobalParams]
var_name_base = eta
op_num = 4
[]
[Mesh]
type = GeneratedMesh
dim = 2
nx = 80
ny = 40
nz = 0
xmin = 0.0
xmax = 40.0
ymin = 0.0
ymax = 20.0
zmax = 0
elem_type = QUAD4
[]
[Variables]
[./c]
[../]
[./w]
[../]
[./PolycrystalVariables]
[../]
[]
[Kernels]
[./c_res]
type = SplitCHParsed
variable = c
f_name = F
kappa_name = kappa_c
w = w
coupled_variables = 'eta0 eta1 eta2 eta3'
[../]
[./w_res]
type = SplitCHWRes
variable = w
mob_name = M
[../]
[./time]
type = CoupledTimeDerivative
variable = w
v = c
[../]
[./motion]
type = MultiGrainRigidBodyMotion
variable = w
c = c
v = 'eta0 eta1 eta2 eta3'
grain_tracker_object = grain_center
grain_force = grain_force
grain_volumes = grain_volumes
[../]
[./RigidBodyMultiKernel]
# Creates all of the necessary Allen Cahn kernels automatically
c = c
f_name = F
mob_name = L
kappa_name = kappa_eta
grain_force = grain_force
grain_volumes = grain_volumes
grain_tracker_object = grain_center
[../]
[]
[Functions]
[./load_x]
# Defines the force on the grains in the x-direction
type = ParsedFunction
expression = 0.005*cos(x*pi/600)
[../]
[./load_y]
# Defines the force on the grains in the y-direction
type = ConstantFunction
value = 0.002
[../]
[]
[Materials]
[./pfmobility]
type = GenericConstantMaterial
prop_names = 'M L kappa_c kappa_eta'
prop_values = '4.5 60 250 4000'
[../]
[./free_energy]
type = DerivativeParsedMaterial
property_name = F
#coupled_variables = 'c eta0 eta1 eta2 eta3'
#constant_names = 'barr_height cv_eq'
#constant_expressions = '0.1 1.0e-2'
#function = '16*barr_height*(c-cv_eq)^2*(1-cv_eq-c)^2
# +eta0*(1-eta0)*c+eta1*(1-eta1)*c
# +eta2*(1-eta2)*c+eta3*(1-eta3)*c'
constant_names = 'A B'
constant_expressions = '450 1.5'
coupled_variables = 'c eta0 eta1 eta2 eta3' #Must be changed as op_num changes. Copy/paste from line 4
expression = 'A*c^2*(1-c)^2+B*(c^2+6*(1-c)*(eta0^2+eta1^2+eta2^2+eta3^2)
-4*(2-c)*(eta0^3+eta1^3+eta2^3+eta3^3)
+3*(eta0^2+eta1^2+eta2^2+eta3^2)^2)'
derivative_order = 2
[../]
#[./force_density]
# type = ForceDensityMaterial
# c = c
# etas = 'eta0 eta1 eta2 eta3'
#[../]
[./force_density]
type = ExternalForceDensityMaterial
c = c
k = 10.0
etas = 'eta0 eta1 eta2 eta3'
force_x = load_x
force_y = load_y
[../]
[]
[AuxVariables]
[./bnds]
[../]
[./unique_grains]
order = CONSTANT
family = MONOMIAL
[../]
[./var_indices]
order = CONSTANT
family = MONOMIAL
[../]
[./centroids]
order = CONSTANT
family = MONOMIAL
[../]
[]
[AuxKernels]
[./bnds]
type = BndsCalcAux
variable = bnds
#var_name_base = eta
#op_num = 4.0
v = 'eta0 eta1 eta2 eta3'
[../]
[./unique_grains]
type = FeatureFloodCountAux
variable = unique_grains
flood_counter = grain_center
field_display = UNIQUE_REGION
execute_on = timestep_begin
[../]
[./var_indices]
type = FeatureFloodCountAux
variable = var_indices
flood_counter = grain_center
field_display = VARIABLE_COLORING
execute_on = timestep_begin
[../]
[./centroids]
type = FeatureFloodCountAux
variable = centroids
execute_on = timestep_begin
field_display = CENTROID
flood_counter = grain_center
[../]
[]
[ICs]
[./ic_eta1]
x_positions = '32.5 24.0'
int_width = 1.0
z_positions = '0 0'
y_positions = '6.0 14.0'
radii = '4.0 4.0'
3D_spheres = false
outvalue = 0
variable = eta1
invalue = 1
type = SpecifiedSmoothCircleIC
block = 0
[../]
[./multip]
x_positions = '5.5 15.5 24.0 32.5 7.0 15.5 24.0 32.5'
int_width = 1.0
z_positions = '0 0'
y_positions = '6.0 6.0 6.0 6.0 14.5 14.5 14.0 14.5'
radii = '4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0'
3D_spheres = false
outvalue = 0.001
variable = c
invalue = 0.999
type = SpecifiedSmoothCircleIC
block = 0
[../]
[./ic_eta0]
x_positions = '5.5 15.5'
int_width = 1.0
z_positions = '0 0'
y_positions = '6.0 6.0'
radii = '4.0 4.0'
3D_spheres = false
outvalue = 0.0
variable = eta0
invalue = 1.0
type = SpecifiedSmoothCircleIC
block = 0
[../]
[./ic_eta2]
x_positions = '24.0 7.0'
int_width = 1.0
z_positions = '0 0'
y_positions = '6.0 14.5 '
radii = '4.0 4.0 '
3D_spheres = false
outvalue = 0.0
variable = eta2
invalue = 1.0
type = SpecifiedSmoothCircleIC
block = 0
[../]
[./ic_eta3]
x_positions = '15.5 32.5'
int_width = 1.0
z_positions = '0 0'
y_positions = '14.5 14.5'
radii = '4.0 4.0'
3D_spheres = false
outvalue = 0.0
variable = eta3
invalue = 1.0
type = SpecifiedSmoothCircleIC
block = 0
[../]
[]
[VectorPostprocessors]
[./forces]
type = GrainForcesPostprocessor
grain_force = grain_force
[../]
[./grain_volumes]
type = FeatureVolumeVectorPostprocessor
flood_counter = grain_center
execute_on = 'initial timestep_begin'
[../]
[]
[UserObjects]
[./grain_center]
type = GrainTracker
outputs = none
compute_var_to_feature_map = true
execute_on = 'initial timestep_begin'
[../]
[./grain_force]
type = ComputeExternalGrainForceAndTorque
c = c
grain_data = grain_center
force_density = force_density_ext
etas = 'eta0 eta1 eta2 eta3'
execute_on = 'initial linear nonlinear'
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
scheme = bdf2
solve_type = NEWTON
petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
petsc_options_value = 'asm 31 preonly lu 1'
l_max_its = 30
l_tol = 1.0e-4
nl_rel_tol = 1.0e-10
start_time = 0.0
num_steps = 20
dt = 0.01
[]
[Outputs]
exodus = true
[]
(modules/phase_field/examples/rigidbodymotion/AC_CH_advection_constforce_rect.i)
#
# Tests the Rigid Body Motion of grains due to applied forces.
# Concenterated forces and torques have been applied and corresponding
# advection velocities are calculated.
# Grain motion kernels make the grains translate and rotate as a rigidbody,
# applicable to grain movement in porous media
#
[Mesh]
type = GeneratedMesh
dim = 2
nx = 50
ny = 25
nz = 0
xmax = 50
ymax = 25
zmax = 0
elem_type = QUAD4
[]
[Variables]
[./c]
order = FIRST
family = LAGRANGE
[../]
[./w]
order = FIRST
family = LAGRANGE
[../]
[./eta]
order = FIRST
family = LAGRANGE
[../]
[]
[AuxVariables]
[./vadvx]
order = CONSTANT
family = MONOMIAL
[../]
[./vadvy]
order = CONSTANT
family = MONOMIAL
[../]
[]
[Kernels]
[./c_res]
type = SplitCHParsed
variable = c
f_name = F
kappa_name = kappa_c
w = w
coupled_variables = eta
[../]
[./w_res]
type = SplitCHWRes
variable = w
mob_name = M
[../]
[./time]
type = CoupledTimeDerivative
variable = w
v = c
[../]
[./motion]
# advection kernel corrsponding to CH equation
type = MultiGrainRigidBodyMotion
variable = w
c = c
v = eta
grain_tracker_object = grain_center
grain_force = grain_force
grain_volumes = grain_volumes
[../]
[./eta_dot]
type = TimeDerivative
variable = eta
[../]
[./vadv_eta]
# advection kernel corrsponding to AC equation
type = SingleGrainRigidBodyMotion
variable = eta
c = c
v = eta
grain_tracker_object = grain_center
grain_force = grain_force
grain_volumes = grain_volumes
[../]
[./acint_eta]
type = ACInterface
variable = eta
mob_name = M
coupled_variables = c
kappa_name = kappa_eta
[../]
[./acbulk_eta]
type = AllenCahn
variable = eta
mob_name = M
f_name = F
coupled_variables = c
[../]
[]
[AuxKernels]
[./vadv_x]
type = GrainAdvectionAux
component = x
grain_tracker_object = grain_center
grain_force = grain_force
grain_volumes = grain_volumes
variable = vadvx
[../]
[./vadv_y]
type = GrainAdvectionAux
component = y
grain_tracker_object = grain_center
grain_force = grain_force
grain_volumes = grain_volumes
variable = vadvy
[../]
[]
[Materials]
[./pfmobility]
type = GenericConstantMaterial
prop_names = 'M kappa_c kappa_eta'
prop_values = '1.0 2.0 0.1'
[../]
[./free_energy]
type = DerivativeParsedMaterial
coupled_variables = 'c eta'
constant_names = 'barr_height cv_eq'
constant_expressions = '0.1 1.0e-2'
expression = 16*barr_height*(c-cv_eq)^2*(1-cv_eq-c)^2+(c-eta)^2
derivative_order = 2
[../]
[]
[VectorPostprocessors]
[./forces]
# VectorPostprocessor for outputting grain forces and torques
type = GrainForcesPostprocessor
grain_force = grain_force
[../]
[./grain_volumes]
type = FeatureVolumeVectorPostprocessor
flood_counter = grain_center
execute_on = 'initial timestep_begin'
[../]
[]
[UserObjects]
[./grain_center]
type = GrainTracker
variable = eta
outputs = none
compute_var_to_feature_map = true
execute_on = 'initial timestep_begin'
[../]
[./grain_force]
type = ConstantGrainForceAndTorque
execute_on = 'linear nonlinear'
force = '0.2 0.0 0.0 ' # size should be 3 * no. of grains
torque = '0.0 0.0 5.0 ' # size should be 3 * no. of grains
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
nl_max_its = 30
scheme = bdf2
solve_type = NEWTON
petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
petsc_options_value = 'asm 31 preonly lu 1'
l_max_its = 30
l_tol = 1.0e-4
nl_rel_tol = 1.0e-10
start_time = 0.0
dt = 0.1
end_time = 10
[]
[Outputs]
exodus = true
[]
[ICs]
[./rect_c]
y2 = 20.0
y1 = 5.0
inside = 1.0
x2 = 30.0
variable = c
x1 = 10.0
type = BoundingBoxIC
[../]
[./rect_eta]
y2 = 20.0
y1 = 5.0
inside = 1.0
x2 = 30.0
variable = eta
x1 = 10.0
type = BoundingBoxIC
[../]
[]
(modules/phase_field/examples/rigidbodymotion/AC_CH_Multigrain.i)
# Tests the rigid body motion due to applied force of multiple particles.
# ***COPY AND PASTE THESE AS NEEDED***
# 'gr0 gr1 gr2 gr3 gr4 gr5 gr6 gr7 gr8 gr9 gr10 gr11 gr12 gr13 gr14 gr15 gr16 gr17 gr18 gr19'
# (gr0^2+gr1^2+gr2^2+gr3^2+gr4^2+gr5^2+gr6^2+gr7^2+gr8^2+gr9^2+gr10^2+gr11^2+gr12^2+gr13^2+gr14^2+gr15^2+gr16^2+gr17^2+gr18^2+gr19^2)
# (gr0^3+gr1^3+gr2^3+gr3^3+gr4^3+gr5^3+gr6^3+gr7^3+gr8^3+gr9^3+gr10^3+gr11^3+gr12^3+gr13^3+gr14^3+gr15^3+gr16^3+gr17^3+gr18^3+gr19^3)
[GlobalParams]
op_num = 4
var_name_base = gr
[]
[Mesh]
type = GeneratedMesh
dim = 2
nx = 15
ny = 15
xmin = 0
xmax = 600
ymin = 0
ymax = 600
elem_type = QUAD4
uniform_refine = 1
[]
[Variables]
[./c]
[../]
[./w]
[../]
[./PolycrystalVariables] # Automatically creates order parameter variables
[../]
[]
[AuxVariables]
[./bnds]
[../]
[./force]
order = CONSTANT
family = MONOMIAL
[../]
[./free_energy]
order = CONSTANT
family = MONOMIAL
[../]
[./unique_grains]
order = CONSTANT
family = MONOMIAL
[../]
[./var_indices]
order = CONSTANT
family = MONOMIAL
[../]
[./centroids]
order = CONSTANT
family = MONOMIAL
[../]
[]
[Functions]
[./load_x]
# Defines the force on the grains in the x-direction
type = ParsedFunction
expression = 0.005*cos(x*pi/600)
[../]
[./load_y]
# Defines the force on the grains in the y-direction
type = ConstantFunction
value = 0.002
[../]
[]
[Kernels]
[./RigidBodyMultiKernel]
# Creates all of the necessary Allen Cahn kernels automatically
c = c
f_name = f_loc
mob_name = L
kappa_name = kappa_gr
grain_force = grain_force
grain_volumes = grain_volumes
grain_tracker_object = grain_center
[../]
# Cahn Hilliard kernels
[./dt_w]
type = CoupledTimeDerivative
variable = w
v = c
[../]
[./CH_wres]
type = SplitCHWRes
variable = w
mob_name = M
[../]
[./CH_Parsed]
type = SplitCHParsed
variable = c
f_name = f_loc
w = w
kappa_name = kappa_c
coupled_variables = 'gr0 gr1 gr2 gr3' # Must be changed as op_num changes. Copy/paste from line 4
[../]
[./CH_RBM]
type = MultiGrainRigidBodyMotion
variable = w
c = c
v = 'gr0 gr1 gr2 gr3'
grain_force = grain_force
grain_volumes = grain_volumes
grain_tracker_object = grain_center
[../]
[]
[AuxKernels]
[./force_x]
type = FunctionAux
variable = force
function = load_x
[../]
[./force_y]
type = FunctionAux
variable = force
function = load_y
[../]
[./energy_density]
type = TotalFreeEnergy
variable = free_energy
f_name = f_loc
kappa_names = kappa_c
interfacial_vars = c
[../]
[./bnds]
type = BndsCalcAux
variable = bnds
[../]
[]
[BCs]
[./bcs]
#zero flux BC
type = NeumannBC
value = 0
variable = c
boundary = '0 1 2 3'
[../]
[]
[Materials]
[./constants]
type = GenericConstantMaterial
prop_names = 'kappa_gr kappa_c M L'
prop_values = '250 4000 4.5 60'
[../]
[./free_energy]
type = DerivativeParsedMaterial
property_name = f_loc
constant_names = 'A B'
constant_expressions = '450 1.5'
coupled_variables = 'c gr0 gr1 gr2 gr3' #Must be changed as op_num changes. Copy/paste from line 4
expression = 'A*c^2*(1-c)^2+B*(c^2+6*(1-c)*(gr0^2+gr1^2+gr2^2+gr3^2)
-4*(2-c)*(gr0^3+gr1^3+gr2^3+gr3^3)
+3*(gr0^2+gr1^2+gr2^2+gr3^2)^2)'
#Copy/paste from lines 5-6
derivative_order = 2
[../]
[./force_density]
type = ExternalForceDensityMaterial
c = c
k = 10.0
force_x = load_x
force_y = load_y
[../]
[]
[Postprocessors]
[./total_energy]
type = ElementIntegralVariablePostprocessor
variable = free_energy
execute_on = 'initial timestep_end'
[../]
[]
[VectorPostprocessors]
[./forces]
type = GrainForcesPostprocessor
grain_force = grain_force
[../]
[./grain_volumes]
type = FeatureVolumeVectorPostprocessor
flood_counter = grain_center
execute_on = 'initial timestep_begin'
[../]
[]
[UserObjects]
[./grain_center]
type = GrainTracker
outputs = none
compute_var_to_feature_map = true
execute_on = 'initial timestep_begin'
[../]
[./grain_force]
type = ComputeExternalGrainForceAndTorque
grain_data = grain_center
c = c
etas = 'gr0 gr1 gr2 gr3'
force_density = force_density_ext
execute_on = 'linear nonlinear'
[../]
[]
[Preconditioning]
[./coupled]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
scheme = bdf2
solve_type = NEWTON
petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type
-sub_pc_type -pc_asm_overlap'
petsc_options_value = 'asm 31 preonly
ilu 2'
l_tol = 1e-05
nl_max_its = 30
l_max_its = 30
nl_rel_tol = 1e-07
nl_abs_tol = 1e-09
start_time = 0.0
end_time = 4
dt = 0.05
[]
[Outputs]
exodus = true
perf_graph = true
[./display]
type = Console
max_rows = 12
[../]
[]
[ICs]
[./concentration_IC]
type = SpecifiedSmoothCircleIC
x_positions = '150 450 150 450'
y_positions = '150 150 450 450'
z_positions = '0 0 0 0'
radii = '120 120 120 120'
variable = c
invalue = 1.0
outvalue = 0.0
int_width = 25
[../]
[./gr0_IC]
type = SmoothCircleIC
variable = gr0
x1 = 150
y1 = 150
radius = 120
invalue = 1.0
outvalue = 0.0
int_width = 25
[../]
[./gr1_IC]
type = SmoothCircleIC
variable = gr1
x1 = 450
y1 = 150
radius = 120
invalue = 1.0
outvalue = 0.0
int_width = 25
[../]
[./gr2_IC]
type = SmoothCircleIC
variable = gr2
x1 = 150
y1 = 450
radius = 120
invalue = 1.0
outvalue = 0.0
int_width = 25
[../]
[./gr3_IC]
type = SmoothCircleIC
variable = gr3
x1 = 450
y1 = 450
radius = 120
invalue = 1.0
outvalue = 0.0
int_width = 25
[../]
[]
(modules/phase_field/test/tests/rigidbodymotion/grain_forcesum.i)
# test file for showing summing forces and torques obtained from other userobjects
[GlobalParams]
var_name_base = eta
op_num = 2
[]
[Mesh]
type = GeneratedMesh
dim = 2
nx = 5
ny = 3
nz = 0
xmax = 50
ymax = 25
zmax = 0
elem_type = QUAD4
[]
[Variables]
[./c]
order = FIRST
family = LAGRANGE
[./InitialCondition]
type = SpecifiedSmoothCircleIC
invalue = 1.0
outvalue = 0.1
int_width = 6.0
x_positions = '20.0 30.0 '
z_positions = '0.0 0.0 '
y_positions = '0.0 25.0 '
radii = '14.0 14.0'
3D_spheres = false
variable = c
[../]
[../]
[./w]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./c_res]
type = SplitCHParsed
variable = c
f_name = F
kappa_name = kappa_c
w = w
[../]
[./w_res]
type = SplitCHWRes
variable = w
mob_name = M
[../]
[./time]
type = CoupledTimeDerivative
variable = w
v = c
[../]
[]
[Materials]
[./pfmobility]
type = GenericConstantMaterial
prop_names = 'M kappa_c kappa_eta'
prop_values = '5.0 2.0 0.1'
[../]
[./free_energy]
type = DerivativeParsedMaterial
property_name = F
coupled_variables = c
constant_names = 'barr_height cv_eq'
constant_expressions = '0.1 1.0e-2'
expression = 16*barr_height*(c-cv_eq)^2*(1-cv_eq-c)^2
derivative_order = 2
[../]
[./force_density]
type = ForceDensityMaterial
c = c
etas ='eta0 eta1'
[../]
[]
[AuxVariables]
[./eta0]
[../]
[./eta1]
[../]
[./bnds]
[../]
[./df00]
order = CONSTANT
family = MONOMIAL
[../]
[./df01]
order = CONSTANT
family = MONOMIAL
[../]
[./df10]
order = CONSTANT
family = MONOMIAL
[../]
[./df11]
order = CONSTANT
family = MONOMIAL
[../]
[]
[ICs]
[./ic_eta0]
int_width = 6.0
x1 = 20.0
y1 = 0.0
radius = 14.0
outvalue = 0.0
variable = eta0
invalue = 1.0
type = SmoothCircleIC
[../]
[./IC_eta1]
int_width = 6.0
x1 = 30.0
y1 = 25.0
radius = 14.0
outvalue = 0.0
variable = eta1
invalue = 1.0
type = SmoothCircleIC
[../]
[]
[VectorPostprocessors]
[./forces_dns]
type = GrainForcesPostprocessor
grain_force = grain_force_dns
[../]
[./forces_cosnt]
type = GrainForcesPostprocessor
grain_force = grain_force_const
[../]
[./forces_total]
type = GrainForcesPostprocessor
grain_force = grain_force
[../]
[]
[UserObjects]
[./grain_center]
type = GrainTracker
outputs = none
compute_var_to_feature_map = true
execute_on = 'initial timestep_begin'
[../]
[./grain_force_dns]
type = ComputeGrainForceAndTorque
c = c
etas = 'eta0 eta1'
execute_on = 'linear nonlinear'
grain_data = grain_center
force_density = force_density
[../]
[./grain_force_const]
type = ConstantGrainForceAndTorque
execute_on = 'linear nonlinear'
force = '2.0 0.0 0.0 0.0 0.0 0.0'
torque = '0.0 0.0 0.0 0.0 0.0 0.0'
[../]
[./grain_force]
type = GrainForceAndTorqueSum
execute_on = 'linear nonlinear'
grain_forces = 'grain_force_dns grain_force_const'
grain_num = 2
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
scheme = bdf2
solve_type = NEWTON
petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
petsc_options_value = 'asm 31 preonly lu 1'
l_max_its = 20
nl_max_its = 20
l_tol = 1.0e-4
nl_rel_tol = 1.0e-10
start_time = 0.0
num_steps = 2
dt = 0.1
[]
[Outputs]
exodus = true
csv = true
[]
(modules/phase_field/examples/rigidbodymotion/grain_forcedensity_ext.i)
# example showing grain motion due to applied force density on grains
[GlobalParams]
var_name_base = eta
op_num = 2
[]
[Mesh]
type = GeneratedMesh
dim = 2
nx = 40
ny = 20
nz = 0
xmin = 0.0
xmax = 40.0
ymin = 0.0
ymax = 20.0
zmax = 0
elem_type = QUAD4
[]
[Variables]
[./c]
order = FIRST
family = LAGRANGE
[./InitialCondition]
type = SpecifiedSmoothCircleIC
invalue = 1.0
outvalue = 0.0
int_width = 6.0
x_positions = '20.0 30.0 '
z_positions = '0.0 0.0 '
y_positions = '0.0 25.0 '
radii = '14.0 14.0'
3D_spheres = false
variable = c
[../]
[../]
[./w]
order = FIRST
family = LAGRANGE
[../]
[]
[Functions]
[./load]
type = ConstantFunction
value = -0.01
[../]
[]
[Kernels]
[./c_res]
type = SplitCHParsed
variable = c
f_name = F
kappa_name = kappa_c
w = w
[../]
[./w_res]
type = SplitCHWRes
variable = w
mob_name = M
[../]
[./time]
type = CoupledTimeDerivative
variable = w
v = c
[../]
[./motion]
type = MultiGrainRigidBodyMotion
variable = w
c = c
v = 'eta0 eta1'
grain_tracker_object = grain_center
grain_force = grain_force
grain_volumes = grain_volumes
[../]
[]
[Materials]
[./pfmobility]
type = GenericConstantMaterial
prop_names = 'M kappa_c kappa_eta'
prop_values = '1.0 2.0 0.1'
[../]
[./free_energy]
type = DerivativeParsedMaterial
property_name = F
coupled_variables = c
constant_names = 'barr_height cv_eq'
constant_expressions = '0.1 1.0e-2'
expression = 16*barr_height*(c-cv_eq)^2*(1-cv_eq-c)^2
derivative_order = 2
[../]
[./force_density]
type = ExternalForceDensityMaterial
c = c
etas = 'eta0 eta1'
k = 1.0
force_y = load
[../]
[]
[AuxVariables]
[./eta0]
[../]
[./eta1]
[../]
[./bnds]
[../]
[./df00]
order = CONSTANT
family = MONOMIAL
[../]
[./df01]
order = CONSTANT
family = MONOMIAL
[../]
[./df10]
order = CONSTANT
family = MONOMIAL
[../]
[./df11]
order = CONSTANT
family = MONOMIAL
[../]
[]
[AuxKernels]
[./bnds]
type = BndsCalcAux
variable = bnds
var_name_base = eta
op_num = 2
v = 'eta0 eta1'
[../]
[./df01]
type = MaterialStdVectorRealGradientAux
variable = df01
component = 1
property = force_density_ext
[../]
[./df11]
type = MaterialStdVectorRealGradientAux
variable = df11
index = 1
component = 1
property = force_density_ext
[../]
[./df00]
type = MaterialStdVectorRealGradientAux
variable = df00
property = force_density_ext
[../]
[./df10]
type = MaterialStdVectorRealGradientAux
variable = df10
index = 1
property = force_density_ext
[../]
[]
[ICs]
[./ic_eta0]
int_width = 6.0
x1 = 20.0
y1 = 0.0
radius = 14.0
outvalue = 0.0
variable = eta0
invalue = 1.0
type = SmoothCircleIC
[../]
[./IC_eta1]
int_width = 6.0
x1 = 30.0
y1 = 25.0
radius = 14.0
outvalue = 0.0
variable = eta1
invalue = 1.0
type = SmoothCircleIC
[../]
[]
[VectorPostprocessors]
[./forces]
type = GrainForcesPostprocessor
grain_force = grain_force
[../]
[./grain_volumes]
type = FeatureVolumeVectorPostprocessor
flood_counter = grain_center
execute_on = 'initial timestep_begin'
[../]
[]
[UserObjects]
[./grain_center]
type = GrainTracker
outputs = none
compute_var_to_feature_map = true
execute_on = 'initial timestep_begin'
[../]
[./grain_force]
type = ComputeExternalGrainForceAndTorque
c = c
etas = 'eta0 eta1'
grain_data = grain_center
force_density = force_density_ext
execute_on = 'initial linear nonlinear'
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
scheme = bdf2
solve_type = NEWTON
petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
petsc_options_value = 'asm 31 preonly lu 1'
l_max_its = 30
l_tol = 1.0e-4
nl_rel_tol = 1.0e-10
start_time = 0.0
num_steps = 5
dt = 0.1
[./Adaptivity]
refine_fraction = 0.7
coarsen_fraction = 0.1
max_h_level = 2
initial_adaptivity = 1
[../]
[]
[Outputs]
exodus = true
[]
(modules/phase_field/test/tests/rigidbodymotion/grain_forcedensity.i)
# test file for showing reaction forces between particles
[GlobalParams]
var_name_base = eta
op_num = 2
[]
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 5
nz = 0
xmax = 50
ymax = 25
zmax = 0
elem_type = QUAD4
uniform_refine = 1
[]
[Variables]
[./c]
order = FIRST
family = LAGRANGE
[../]
[./w]
order = FIRST
family = LAGRANGE
[../]
[./eta0]
[../]
[./eta1]
[../]
[]
[Kernels]
[./c_res]
type = SplitCHParsed
variable = c
f_name = F
kappa_name = kappa_c
coupled_variables = 'eta0 eta1'
w = w
[../]
[./w_res]
type = SplitCHWRes
variable = w
mob_name = M
[../]
[./time]
type = CoupledTimeDerivative
variable = w
v = c
[../]
[./motion]
type = MultiGrainRigidBodyMotion
variable = w
c = c
v = 'eta0 eta1'
grain_force = grain_force
grain_tracker_object = grain_center
grain_volumes = grain_volumes
[../]
[./eta0_dot]
type = TimeDerivative
variable = eta0
[../]
[./vadv_eta]
type = SingleGrainRigidBodyMotion
variable = eta0
c = c
v = 'eta0 eta1'
grain_force = grain_force
grain_tracker_object = grain_center
grain_volumes = grain_volumes
op_index = 0
[../]
[./acint_eta0]
type = ACInterface
variable = eta0
mob_name = M
#coupled_variables = c
kappa_name = kappa_eta
[../]
[./acbulk_eta0]
type = AllenCahn
variable = eta0
mob_name = M
f_name = F
coupled_variables = 'c eta1'
[../]
[./eta1_dot]
type = TimeDerivative
variable = eta1
[../]
[./vadv_eta1]
type = SingleGrainRigidBodyMotion
variable = eta1
c = c
v = 'eta0 eta1'
op_index = 1
grain_force = grain_force
grain_tracker_object = grain_center
grain_volumes = grain_volumes
[../]
[./acint_eta1]
type = ACInterface
variable = eta1
mob_name = M
#coupled_variables = c
kappa_name = kappa_eta
[../]
[./acbulk_eta1]
type = AllenCahn
variable = eta1
mob_name = M
f_name = F
coupled_variables = 'c eta0'
[../]
[]
[Materials]
[./pfmobility]
type = GenericConstantMaterial
prop_names = 'M kappa_c kappa_eta'
prop_values = '1.0 0.5 0.5'
[../]
[./free_energy]
type = DerivativeParsedMaterial
property_name = F
coupled_variables = 'c eta0 eta1'
constant_names = 'barr_height cv_eq'
constant_expressions = '0.1 1.0e-2'
expression = 16*barr_height*(c-cv_eq)^2*(1-cv_eq-c)^2+eta0*(1-eta0)*c+eta1*(1-eta1)*c
derivative_order = 2
[../]
[./force_density]
type = ForceDensityMaterial
c = c
etas ='eta0 eta1'
[../]
[]
[AuxVariables]
[./bnds]
[../]
[./df00]
order = CONSTANT
family = MONOMIAL
[../]
[./df01]
order = CONSTANT
family = MONOMIAL
[../]
[./df10]
order = CONSTANT
family = MONOMIAL
[../]
[./df11]
order = CONSTANT
family = MONOMIAL
[../]
[./unique_grains]
order = CONSTANT
family = MONOMIAL
[../]
[./var_indices]
order = CONSTANT
family = MONOMIAL
[../]
[./centroids]
order = CONSTANT
family = MONOMIAL
[../]
[]
[AuxKernels]
[./bnds]
type = BndsCalcAux
variable = bnds
var_name_base = eta
op_num = 2
v = 'eta0 eta1'
[../]
[./df01]
type = MaterialStdVectorRealGradientAux
variable = df01
index = 0
component = 1
property = force_density
[../]
[./df11]
type = MaterialStdVectorRealGradientAux
variable = df11
index = 1
component = 1
property = force_density
[../]
[./df00]
type = MaterialStdVectorRealGradientAux
variable = df00
index = 0
component = 0
property = force_density
[../]
[./df10]
type = MaterialStdVectorRealGradientAux
variable = df10
index = 1
component = 0
property = force_density
[../]
[./unique_grains]
type = FeatureFloodCountAux
variable = unique_grains
flood_counter = grain_center
field_display = UNIQUE_REGION
execute_on = timestep_begin
[../]
[./var_indices]
type = FeatureFloodCountAux
variable = var_indices
flood_counter = grain_center
field_display = VARIABLE_COLORING
execute_on = timestep_begin
[../]
[./centroids]
type = FeatureFloodCountAux
variable = centroids
execute_on = timestep_begin
field_display = CENTROID
flood_counter = grain_center
[../]
[]
[ICs]
[./ic_eta0]
int_width = 1.0
x1 = 20.0
y1 = 0.0
radius = 14.0
outvalue = 0.0
variable = eta0
invalue = 1.0
type = SmoothCircleIC
[../]
[./IC_eta1]
int_width = 1.0
x1 = 30.0
y1 = 25.0
radius = 14.0
outvalue = 0.0
variable = eta1
invalue = 1.0
type = SmoothCircleIC
[../]
[./ic_c]
type = SpecifiedSmoothCircleIC
invalue = 1.0
outvalue = 0.1
int_width = 1.0
x_positions = '20.0 30.0 '
z_positions = '0.0 0.0 '
y_positions = '0.0 25.0 '
radii = '14.0 14.0'
3D_spheres = false
variable = c
block = 0
[../]
[]
[VectorPostprocessors]
[./forces]
type = GrainForcesPostprocessor
grain_force = grain_force
[../]
[./grain_volumes]
type = FeatureVolumeVectorPostprocessor
flood_counter = grain_center
execute_on = 'initial timestep_begin'
[../]
[]
[UserObjects]
[./grain_center]
type = GrainTracker
outputs = none
compute_var_to_feature_map = true
execute_on = 'initial timestep_begin'
[../]
[./grain_force]
type = ComputeGrainForceAndTorque
execute_on = 'linear nonlinear'
grain_data = grain_center
force_density = force_density
c = c
etas = 'eta0 eta1'
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
scheme = bdf2
solve_type = NEWTON
petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
petsc_options_value = 'asm 31 preonly lu 1'
l_max_its = 30
l_tol = 1.0e-4
nl_rel_tol = 1.0e-10
start_time = 0.0
num_steps = 1
dt = 0.1
[]
[Outputs]
exodus = true
csv = true
[]
(modules/phase_field/test/tests/rigidbodymotion/grain_motion.i)
# test file for applyting advection term and observing rigid body motion of grains
[Mesh]
type = GeneratedMesh
dim = 2
nx = 25
ny = 15
nz = 0
xmax = 50
ymax = 25
zmax = 0
elem_type = QUAD4
[]
[Variables]
[./c]
order = FIRST
family = LAGRANGE
[../]
[./w]
order = FIRST
family = LAGRANGE
[../]
[./eta]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./c_res]
type = SplitCHParsed
variable = c
f_name = F
kappa_name = kappa_c
w = w
coupled_variables = eta
[../]
[./w_res]
type = SplitCHWRes
variable = w
mob_name = M
[../]
[./time]
type = CoupledTimeDerivative
variable = w
v = c
[../]
[./motion]
type = MultiGrainRigidBodyMotion
variable = w
c = c
v = eta
grain_tracker_object = grain_center
grain_force = grain_force
grain_volumes = grain_volumes
[../]
[./eta_dot]
type = TimeDerivative
variable = eta
[../]
[./vadv_eta]
type = SingleGrainRigidBodyMotion
variable = eta
c = c
v = eta
grain_tracker_object = grain_center
grain_force = grain_force
grain_volumes = grain_volumes
[../]
[./acint_eta]
type = ACInterface
variable = eta
mob_name = M
coupled_variables = c
kappa_name = kappa_eta
[../]
[./acbulk_eta]
type = AllenCahn
variable = eta
mob_name = M
f_name = F
coupled_variables = c
[../]
[]
[Materials]
[./pfmobility]
type = GenericConstantMaterial
prop_names = 'M kappa_c kappa_eta'
prop_values = '5.0 2.0 0.1'
[../]
[./free_energy]
type = DerivativeParsedMaterial
coupled_variables = 'c eta'
constant_names = 'barr_height cv_eq'
constant_expressions = '0.1 1.0e-2'
expression = 16*barr_height*(c-cv_eq)^2*(1-cv_eq-c)^2+(c-eta)^2
derivative_order = 2
[../]
[]
[VectorPostprocessors]
[./forces]
type = GrainForcesPostprocessor
grain_force = grain_force
[../]
[./grain_volumes]
type = FeatureVolumeVectorPostprocessor
flood_counter = grain_center
execute_on = 'initial timestep_begin'
[../]
[]
[UserObjects]
[./grain_center]
type = GrainTracker
variable = eta
outputs = none
compute_var_to_feature_map = true
execute_on = 'initial timestep_begin'
[../]
[./grain_force]
type = ConstantGrainForceAndTorque
execute_on = 'linear nonlinear'
force = '0.5 0.0 0.0 '
torque = '0.0 0.0 10.0 '
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
nl_max_its = 30
scheme = bdf2
solve_type = NEWTON
petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
petsc_options_value = 'asm 31 preonly lu 1'
l_max_its = 30
l_tol = 1.0e-4
nl_rel_tol = 1.0e-10
start_time = 0.0
dt = 0.2
num_steps = 1
[]
[Outputs]
exodus = true
[]
[ICs]
[./rect_c]
y2 = 20.0
y1 = 5.0
inside = 1.0
x2 = 30.0
variable = c
x1 = 10.0
type = BoundingBoxIC
[../]
[./rect_eta]
y2 = 20.0
y1 = 5.0
inside = 1.0
x2 = 30.0
variable = eta
x1 = 10.0
type = BoundingBoxIC
[../]
[]
(modules/phase_field/test/tests/rigidbodymotion/grain_maskedforce.i)
# test file for showing pinning of grains
[GlobalParams]
var_name_base = eta
op_num = 2
[]
[Mesh]
type = GeneratedMesh
dim = 2
nx = 25
ny = 15
nz = 0
xmax = 50
ymax = 25
zmax = 0
elem_type = QUAD4
[]
[Variables]
[./c]
order = FIRST
family = LAGRANGE
[./InitialCondition]
type = SpecifiedSmoothCircleIC
invalue = 1.0
outvalue = 0.1
int_width = 4.0
x_positions = '20.0 30.0 '
z_positions = '0.0 0.0 '
y_positions = '0.0 25.0 '
radii = '10.0 10.0'
3D_spheres = false
variable = c
block = 0
[../]
[../]
[./w]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./c_res]
type = SplitCHParsed
variable = c
f_name = F
kappa_name = kappa_c
w = w
[../]
[./w_res]
type = SplitCHWRes
variable = w
mob_name = M
[../]
[./time]
type = CoupledTimeDerivative
variable = w
v = c
[../]
[./motion]
type = MultiGrainRigidBodyMotion
c = c
variable = w
v = 'eta0 eta1'
grain_tracker_object = grain_center
grain_force = grain_force
grain_volumes = grain_volumes
[../]
[]
[Materials]
[./pfmobility]
type = GenericConstantMaterial
block = 0
prop_names = 'M kappa_c kappa_eta'
prop_values = '5.0 2.0 0.1'
[../]
[./free_energy]
type = DerivativeParsedMaterial
block = 0
property_name = F
coupled_variables = c
constant_names = 'barr_height cv_eq'
constant_expressions = '0.1 1.0e-2'
expression = 16*barr_height*(c-cv_eq)^2*(1-cv_eq-c)^2
derivative_order = 2
[../]
[]
[AuxVariables]
[./eta0]
[../]
[./eta1]
[../]
[./bnds]
[../]
[]
[AuxKernels]
[./bnds]
type = BndsCalcAux
variable = bnds
var_name_base = eta
op_num = 2
v = 'eta0 eta1'
block = 0
[../]
[]
[ICs]
[./ic_eta0]
int_width = 4.0
x1 = 20.0
y1 = 0.0
radius = 10.0
outvalue = 0.0
variable = eta0
invalue = 1.0
type = SmoothCircleIC
[../]
[./IC_eta1]
int_width = 4.0
x1 = 30.0
y1 = 25.0
radius = 10.0
outvalue = 0.0
variable = eta1
invalue = 1.0
type = SmoothCircleIC
[../]
[]
[VectorPostprocessors]
[./forces_cosnt]
type = GrainForcesPostprocessor
grain_force = grain_force_const
[../]
[./forces_total]
type = GrainForcesPostprocessor
grain_force = grain_force
[../]
[./grain_volumes]
type = FeatureVolumeVectorPostprocessor
flood_counter = grain_center
execute_on = 'initial timestep_begin'
[../]
[]
[UserObjects]
[./grain_center]
type = GrainTracker
outputs = none
compute_var_to_feature_map = true
execute_on = 'initial timestep_begin'
[../]
[./grain_force_const]
type = ConstantGrainForceAndTorque
execute_on = 'linear nonlinear'
force = '5.0 10.0 0.0 1.0 0.0 0.0'
torque = '0.0 0.0 50.0 0.0 0.0 5.0'
[../]
[./grain_force]
type = MaskedGrainForceAndTorque
grain_force = grain_force_const
pinned_grains = 0
execute_on = 'linear nonlinear'
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
scheme = bdf2
solve_type = NEWTON
petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
petsc_options_value = 'asm 31 preonly lu 1'
l_max_its = 20
nl_max_its = 20
l_tol = 1.0e-4
nl_rel_tol = 1.0e-10
start_time = 0.0
num_steps = 1
dt = 1.0
[]
[Outputs]
exodus = true
csv = true
[]
(modules/phase_field/test/tests/rigidbodymotion/update_orientation.i)
# test file for applyting advection term and observing rigid body motion of grains
[Mesh]
type = GeneratedMesh
dim = 2
nx = 25
ny = 15
nz = 0
xmax = 50
ymax = 25
zmax = 0
elem_type = QUAD4
[]
[Variables]
[./c]
order = FIRST
family = LAGRANGE
[../]
[./w]
order = FIRST
family = LAGRANGE
[../]
[./eta]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./c_res]
type = SplitCHParsed
variable = c
f_name = F
kappa_name = kappa_c
w = w
coupled_variables = eta
[../]
[./w_res]
type = SplitCHWRes
variable = w
mob_name = M
[../]
[./time]
type = CoupledTimeDerivative
variable = w
v = c
[../]
[./motion]
type = MultiGrainRigidBodyMotion
variable = w
c = c
v = eta
grain_tracker_object = grain_center
grain_force = grain_force
grain_volumes = grain_volumes
[../]
[./eta_dot]
type = TimeDerivative
variable = eta
[../]
[./vadv_eta]
type = SingleGrainRigidBodyMotion
variable = eta
c = c
v = eta
grain_tracker_object = grain_center
grain_force = grain_force
grain_volumes = grain_volumes
[../]
[./acint_eta]
type = ACInterface
variable = eta
mob_name = M
coupled_variables = c
kappa_name = kappa_eta
[../]
[./acbulk_eta]
type = AllenCahn
variable = eta
mob_name = M
f_name = F
coupled_variables = c
[../]
[]
[Materials]
[./pfmobility]
type = GenericConstantMaterial
prop_names = 'M kappa_c kappa_eta'
prop_values = '5.0 2.0 0.1'
[../]
[./free_energy]
type = DerivativeParsedMaterial
coupled_variables = 'c eta'
constant_names = 'barr_height cv_eq'
constant_expressions = '0.1 1.0e-2'
expression = 16*barr_height*(c-cv_eq)^2*(1-cv_eq-c)^2+(c-eta)^2
derivative_order = 2
[../]
[]
[AuxVariables]
[./unique_grains]
order = CONSTANT
family = MONOMIAL
[../]
[./var_indices]
order = CONSTANT
family = MONOMIAL
[../]
[./centroids]
order = CONSTANT
family = MONOMIAL
[../]
[./vadv_x]
order = CONSTANT
family = MONOMIAL
[../]
[./vadv_y]
order = CONSTANT
family = MONOMIAL
[../]
[./angle_initial]
order = CONSTANT
family = MONOMIAL
[../]
[./euler_angle]
order = CONSTANT
family = MONOMIAL
[../]
[]
[AuxKernels]
[./unique_grains]
type = FeatureFloodCountAux
variable = unique_grains
flood_counter = grain_center
field_display = UNIQUE_REGION
execute_on = timestep_begin
[../]
[./var_indices]
type = FeatureFloodCountAux
variable = var_indices
flood_counter = grain_center
field_display = VARIABLE_COLORING
execute_on = timestep_begin
[../]
[./centroids]
type = FeatureFloodCountAux
variable = centroids
execute_on = timestep_begin
field_display = CENTROID
flood_counter = grain_center
[../]
[./vadv_x]
type = GrainAdvectionAux
grain_force = grain_force
grain_volumes = grain_volumes
grain_tracker_object = grain_center
execute_on = timestep_begin
component = x
variable = vadv_x
[../]
[./vadv_y]
type = GrainAdvectionAux
grain_force = grain_force
grain_volumes = grain_volumes
grain_tracker_object = grain_center
execute_on = timestep_begin
component = y
variable = vadv_y
[../]
[./angle_initial]
type = OutputEulerAngles
variable = angle_initial
euler_angle_provider = euler_angle_initial
grain_tracker = grain_center
output_euler_angle = phi2
execute_on = timestep_begin
[../]
[./angle]
type = OutputEulerAngles
variable = euler_angle
euler_angle_provider = euler_angle
grain_tracker = grain_center
output_euler_angle = phi2
execute_on = timestep_begin
[../]
[]
[VectorPostprocessors]
[./forces]
type = GrainForcesPostprocessor
grain_force = grain_force
[../]
[./grain_volumes]
type = FeatureVolumeVectorPostprocessor
flood_counter = grain_center
execute_on = 'initial timestep_begin'
[../]
[]
[UserObjects]
[./grain_center]
type = GrainTracker
variable = eta
outputs = none
compute_var_to_feature_map = true
execute_on = 'initial timestep_begin'
[../]
[./grain_force]
type = ConstantGrainForceAndTorque
execute_on = 'initial timestep_begin linear nonlinear'
force = '0.5 0.0 0.0 '
torque = '0.0 0.0 10.0'
[../]
[./euler_angle_initial]
type = RandomEulerAngleProvider
grain_tracker_object = grain_center
execute_on = 'initial timestep_begin'
[../]
[./euler_angle]
type = EulerAngleUpdater
grain_tracker_object = grain_center
euler_angle_provider = euler_angle_initial
grain_torques_object = grain_force
grain_volumes = grain_volumes
execute_on = timestep_begin
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
scheme = bdf2
solve_type = NEWTON
petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
petsc_options_value = 'asm 31 preonly lu 1'
nl_max_its = 30
l_max_its = 30
l_tol = 1.0e-4
nl_rel_tol = 1.0e-10
start_time = 0.0
dt = 0.2
num_steps = 5
[]
[Outputs]
exodus = true
[]
[ICs]
[./rect_c]
y2 = 20.0
y1 = 5.0
inside = 1.0
x2 = 30.0
variable = c
x1 = 10.0
type = BoundingBoxIC
[../]
[./rect_eta]
y2 = 20.0
y1 = 5.0
inside = 1.0
x2 = 30.0
variable = eta
x1 = 10.0
type = BoundingBoxIC
[../]
[]
(modules/phase_field/test/tests/rigidbodymotion/polycrystal_action.i)
# test file for showing reaction forces between particles
[GlobalParams]
var_name_base = eta
op_num = 2
[]
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 5
nz = 0
xmax = 50
ymax = 25
zmax = 0
elem_type = QUAD4
uniform_refine = 1
[]
[Variables]
[./c]
order = FIRST
family = LAGRANGE
[../]
[./w]
order = FIRST
family = LAGRANGE
[../]
[./PolycrystalVariables]
[../]
[]
[Kernels]
[./c_res]
type = SplitCHParsed
variable = c
f_name = F
kappa_name = kappa_c
coupled_variables = 'eta0 eta1'
w = w
[../]
[./w_res]
type = SplitCHWRes
variable = w
mob_name = M
[../]
[./time]
type = CoupledTimeDerivative
variable = w
v = c
[../]
[./motion]
type = MultiGrainRigidBodyMotion
variable = w
c = c
v = 'eta0 eta1'
grain_force = grain_force
grain_tracker_object = grain_center
grain_volumes = grain_volumes
[../]
[./RigidBodyMultiKernel]
# Creates all of the necessary Allen Cahn kernels automatically
c = c
f_name = F
mob_name = M
kappa_name = kappa_eta
grain_force = grain_force
grain_tracker_object = grain_center
grain_volumes = grain_volumes
[../]
[]
[Materials]
[./pfmobility]
type = GenericConstantMaterial
prop_names = 'M kappa_c kappa_eta'
prop_values = '1.0 0.5 0.5'
[../]
[./free_energy]
type = DerivativeParsedMaterial
property_name = F
coupled_variables = 'c eta0 eta1'
constant_names = 'barr_height cv_eq'
constant_expressions = '0.1 1.0e-2'
expression = 16*barr_height*(c-cv_eq)^2*(1-cv_eq-c)^2+eta0*(1-eta0)*c+eta1*(1-eta1)*c
derivative_order = 2
[../]
[./force_density]
type = ForceDensityMaterial
c = c
etas ='eta0 eta1'
[../]
[]
[AuxVariables]
[./bnds]
[../]
[./MultiAuxVariables]
order = CONSTANT
family = MONOMIAL
variable_base = 'df'
data_type = 'RealGradient'
grain_num = 2
[../]
[./vadvx]
order = CONSTANT
family = MONOMIAL
[../]
[./vadvy]
order = CONSTANT
family = MONOMIAL
[../]
[./unique_grains]
order = CONSTANT
family = MONOMIAL
[../]
[./var_indices]
order = CONSTANT
family = MONOMIAL
[../]
[./centroids]
order = CONSTANT
family = MONOMIAL
[../]
[]
[AuxKernels]
[./bnds]
type = BndsCalcAux
variable = bnds
var_name_base = eta
op_num = 2
v = 'eta0 eta1'
[../]
[./MaterialVectorGradAuxKernel]
variable_base = 'df'
grain_num = 2
property = 'force_density'
[../]
[./vadv_x]
type = GrainAdvectionAux
component = x
grain_tracker_object = grain_center
grain_force = grain_force
grain_volumes = grain_volumes
variable = vadvx
[../]
[./vadv_y]
type = GrainAdvectionAux
component = y
grain_tracker_object = grain_center
grain_force = grain_force
grain_volumes = grain_volumes
variable = vadvy
[../]
[./unique_grains]
type = FeatureFloodCountAux
variable = unique_grains
flood_counter = grain_center
field_display = UNIQUE_REGION
execute_on = timestep_begin
[../]
[./var_indices]
type = FeatureFloodCountAux
variable = var_indices
flood_counter = grain_center
field_display = VARIABLE_COLORING
execute_on = timestep_begin
[../]
[./centroids]
type = FeatureFloodCountAux
variable = centroids
execute_on = timestep_begin
field_display = CENTROID
flood_counter = grain_center
[../]
[]
[ICs]
[./ic_eta0]
int_width = 1.0
x1 = 20.0
y1 = 0.0
radius = 14.0
outvalue = 0.0
variable = eta0
invalue = 1.0
type = SmoothCircleIC
[../]
[./IC_eta1]
int_width = 1.0
x1 = 30.0
y1 = 25.0
radius = 14.0
outvalue = 0.0
variable = eta1
invalue = 1.0
type = SmoothCircleIC
[../]
[./ic_c]
type = SpecifiedSmoothCircleIC
invalue = 1.0
outvalue = 0.1
int_width = 1.0
x_positions = '20.0 30.0 '
z_positions = '0.0 0.0 '
y_positions = '0.0 25.0 '
radii = '14.0 14.0'
3D_spheres = false
variable = c
block = 0
[../]
[]
[VectorPostprocessors]
[./forces]
type = GrainForcesPostprocessor
grain_force = grain_force
[../]
[./grain_volumes]
type = FeatureVolumeVectorPostprocessor
flood_counter = grain_center
execute_on = 'initial timestep_begin'
[../]
[]
[UserObjects]
[./grain_center]
type = GrainTracker
outputs = none
compute_var_to_feature_map = true
execute_on = 'initial timestep_begin'
[../]
[./grain_force]
type = ComputeGrainForceAndTorque
execute_on = 'initial linear nonlinear'
grain_data = grain_center
force_density = force_density
c = c
etas = 'eta0 eta1'
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
scheme = bdf2
solve_type = NEWTON
petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
petsc_options_value = 'asm 31 preonly lu 1'
l_max_its = 30
l_tol = 1.0e-4
nl_rel_tol = 1.0e-10
start_time = 0.0
num_steps = 1
dt = 0.1
[]
[Outputs]
exodus = true
csv = true
[]
(modules/phase_field/test/tests/rigidbodymotion/grain_motion_fauxGT.i)
# test file for showing reaction forces between particles
[GlobalParams]
var_name_base = eta
op_num = 2
[]
[Mesh]
type = GeneratedMesh
dim = 2
nx = 10
ny = 5
nz = 0
xmax = 50
ymax = 25
zmax = 0
elem_type = QUAD4
uniform_refine = 1
[]
[Variables]
[./c]
order = FIRST
family = LAGRANGE
[../]
[./w]
order = FIRST
family = LAGRANGE
[../]
[./eta0]
[../]
[./eta1]
[../]
[]
[Kernels]
[./c_res]
type = SplitCHParsed
variable = c
f_name = F
kappa_name = kappa_c
coupled_variables = 'eta0 eta1'
w = w
[../]
[./w_res]
type = SplitCHWRes
variable = w
mob_name = M
[../]
[./time]
type = CoupledTimeDerivative
variable = w
v = c
[../]
[./motion]
type = MultiGrainRigidBodyMotion
variable = w
c = c
v = 'eta0 eta1'
grain_force = grain_force
grain_tracker_object = grain_center
grain_volumes = grain_volumes
[../]
[./eta0_dot]
type = TimeDerivative
variable = eta0
[../]
[./vadv_eta]
type = SingleGrainRigidBodyMotion
variable = eta0
c = c
v = 'eta0 eta1'
grain_force = grain_force
grain_tracker_object = grain_center
grain_volumes = grain_volumes
op_index = 0
[../]
[./acint_eta0]
type = ACInterface
variable = eta0
mob_name = M
#coupled_variables = c
kappa_name = kappa_eta
[../]
[./acbulk_eta0]
type = AllenCahn
variable = eta0
mob_name = M
f_name = F
coupled_variables = 'c eta1'
[../]
[./eta1_dot]
type = TimeDerivative
variable = eta1
[../]
[./vadv_eta1]
type = SingleGrainRigidBodyMotion
variable = eta1
c = c
v = 'eta0 eta1'
op_index = 1
grain_force = grain_force
grain_tracker_object = grain_center
grain_volumes = grain_volumes
[../]
[./acint_eta1]
type = ACInterface
variable = eta1
mob_name = M
#coupled_variables = c
kappa_name = kappa_eta
[../]
[./acbulk_eta1]
type = AllenCahn
variable = eta1
mob_name = M
f_name = F
coupled_variables = 'c eta0'
[../]
[]
[Materials]
[./pfmobility]
type = GenericConstantMaterial
prop_names = 'M kappa_c kappa_eta'
prop_values = '1.0 0.5 0.5'
[../]
[./free_energy]
type = DerivativeParsedMaterial
property_name = F
coupled_variables = 'c eta0 eta1'
constant_names = 'barr_height cv_eq'
constant_expressions = '0.1 1.0e-2'
expression = 16*barr_height*(c-cv_eq)^2*(1-cv_eq-c)^2+eta0*(1-eta0)*c+eta1*(1-eta1)*c
derivative_order = 2
[../]
[./force_density]
type = ForceDensityMaterial
c = c
etas ='eta0 eta1'
[../]
[]
[AuxVariables]
[./bnds]
[../]
[./df00]
order = CONSTANT
family = MONOMIAL
[../]
[./df01]
order = CONSTANT
family = MONOMIAL
[../]
[./df10]
order = CONSTANT
family = MONOMIAL
[../]
[./df11]
order = CONSTANT
family = MONOMIAL
[../]
[./unique_grains]
order = CONSTANT
family = MONOMIAL
[../]
[./var_indices]
order = CONSTANT
family = MONOMIAL
[../]
[./centroids]
order = CONSTANT
family = MONOMIAL
[../]
[]
[AuxKernels]
[./bnds]
type = BndsCalcAux
variable = bnds
var_name_base = eta
op_num = 2
v = 'eta0 eta1'
[../]
[./df01]
type = MaterialStdVectorRealGradientAux
variable = df01
index = 0
component = 1
property = force_density
[../]
[./df11]
type = MaterialStdVectorRealGradientAux
variable = df11
index = 1
component = 1
property = force_density
[../]
[./df00]
type = MaterialStdVectorRealGradientAux
variable = df00
index = 0
component = 0
property = force_density
[../]
[./df10]
type = MaterialStdVectorRealGradientAux
variable = df10
index = 1
component = 0
property = force_density
[../]
[./unique_grains]
type = FeatureFloodCountAux
variable = unique_grains
flood_counter = grain_center
field_display = UNIQUE_REGION
execute_on = 'initial timestep_end'
[../]
[./var_indices]
type = FeatureFloodCountAux
variable = var_indices
flood_counter = grain_center
field_display = VARIABLE_COLORING
execute_on = 'initial timestep_end'
[../]
[./centroids]
type = FeatureFloodCountAux
variable = centroids
execute_on = 'initial timestep_end'
field_display = CENTROID
flood_counter = grain_center
[../]
[]
[ICs]
[./ic_eta0]
int_width = 1.0
x1 = 20.0
y1 = 0.0
radius = 14.0
outvalue = 0.0
variable = eta0
invalue = 1.0
type = SmoothCircleIC
[../]
[./IC_eta1]
int_width = 1.0
x1 = 30.0
y1 = 25.0
radius = 14.0
outvalue = 0.0
variable = eta1
invalue = 1.0
type = SmoothCircleIC
[../]
[./ic_c]
type = SpecifiedSmoothCircleIC
invalue = 1.0
outvalue = 0.1
int_width = 1.0
x_positions = '20.0 30.0 '
z_positions = '0.0 0.0 '
y_positions = '0.0 25.0 '
radii = '14.0 14.0'
3D_spheres = false
variable = c
block = 0
[../]
[]
[VectorPostprocessors]
[./forces]
type = GrainForcesPostprocessor
grain_force = grain_force
[../]
[./grain_volumes]
type = FeatureVolumeVectorPostprocessor
flood_counter = grain_center
execute_on = 'initial timestep_begin'
[../]
[]
[UserObjects]
[./grain_center]
type = FauxGrainTracker
outputs = none
compute_var_to_feature_map = true
execute_on = 'initial timestep_begin'
variable = 'eta0 eta1'
[../]
[./grain_force]
type = ComputeGrainForceAndTorque
execute_on = 'linear nonlinear'
grain_data = grain_center
force_density = force_density
c = c
etas = 'eta0 eta1'
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
scheme = bdf2
solve_type = NEWTON
petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
petsc_options_value = 'asm 31 preonly lu 1'
l_max_its = 30
l_tol = 1.0e-4
nl_rel_tol = 1.0e-10
start_time = 0.0
num_steps = 1
dt = 0.1
[]
[Outputs]
exodus = true
csv = true
[]
(modules/phase_field/test/tests/rigidbodymotion/update_orientation_verify.i)
# test file for applyting advection term and observing rigid body motion of grains
[Mesh]
type = GeneratedMesh
dim = 3
nx = 14
ny = 7
nz = 7
xmax = 40
ymax = 25
zmax = 25
elem_type = HEX8
[]
[Variables]
[./c]
order = FIRST
family = LAGRANGE
[../]
[./w]
order = FIRST
family = LAGRANGE
[../]
[./eta]
order = FIRST
family = LAGRANGE
[../]
[]
[Kernels]
[./c_res]
type = SplitCHParsed
variable = c
f_name = F
kappa_name = kappa_c
w = w
coupled_variables = eta
[../]
[./w_res]
type = SplitCHWRes
variable = w
mob_name = M
[../]
[./time]
type = CoupledTimeDerivative
variable = w
v = c
[../]
[./motion]
type = MultiGrainRigidBodyMotion
variable = w
c = c
v = eta
grain_tracker_object = grain_center
grain_force = grain_force
grain_volumes = grain_volumes
[../]
[./eta_dot]
type = TimeDerivative
variable = eta
[../]
[./vadv_eta]
type = SingleGrainRigidBodyMotion
variable = eta
c = c
v = eta
grain_tracker_object = grain_center
grain_force = grain_force
grain_volumes = grain_volumes
[../]
[./acint_eta]
type = ACInterface
variable = eta
mob_name = M
coupled_variables = c
kappa_name = kappa_eta
[../]
[./acbulk_eta]
type = AllenCahn
variable = eta
mob_name = M
f_name = F
coupled_variables = c
[../]
[]
[Materials]
[./pfmobility]
type = GenericConstantMaterial
prop_names = 'M kappa_c kappa_eta'
prop_values = '5.0 2.0 0.1'
[../]
[./free_energy]
type = DerivativeParsedMaterial
coupled_variables = 'c eta'
constant_names = 'barr_height cv_eq'
constant_expressions = '0.1 1.0e-2'
expression = 16*barr_height*(c-cv_eq)^2*(1-cv_eq-c)^2+(c-eta)^2
derivative_order = 2
[../]
[]
[AuxVariables]
[./unique_grains]
order = CONSTANT
family = MONOMIAL
[../]
[./var_indices]
order = CONSTANT
family = MONOMIAL
[../]
[./centroids]
order = CONSTANT
family = MONOMIAL
[../]
[./vadv_x]
order = CONSTANT
family = MONOMIAL
[../]
[./vadv_y]
order = CONSTANT
family = MONOMIAL
[../]
[./angle_initial]
order = CONSTANT
family = MONOMIAL
[../]
[./euler_angle]
order = CONSTANT
family = MONOMIAL
[../]
[]
[AuxKernels]
[./unique_grains]
type = FeatureFloodCountAux
variable = unique_grains
flood_counter = grain_center
field_display = UNIQUE_REGION
execute_on = timestep_begin
[../]
[./var_indices]
type = FeatureFloodCountAux
variable = var_indices
flood_counter = grain_center
field_display = VARIABLE_COLORING
execute_on = timestep_begin
[../]
[./centroids]
type = FeatureFloodCountAux
variable = centroids
execute_on = timestep_begin
field_display = CENTROID
flood_counter = grain_center
[../]
[./vadv_x]
type = GrainAdvectionAux
grain_force = grain_force
grain_volumes = grain_volumes
grain_tracker_object = grain_center
execute_on = timestep_begin
component = x
variable = vadv_x
[../]
[./vadv_y]
type = GrainAdvectionAux
grain_force = grain_force
grain_volumes = grain_volumes
grain_tracker_object = grain_center
execute_on = timestep_begin
component = y
variable = vadv_y
[../]
[./angle_initial]
type = OutputEulerAngles
variable = angle_initial
euler_angle_provider = euler_angle_initial
grain_tracker = grain_center
output_euler_angle = phi2
execute_on = timestep_begin
[../]
[./angle]
type = OutputEulerAngles
variable = euler_angle
euler_angle_provider = euler_angle
grain_tracker = grain_center
output_euler_angle = phi2
execute_on = timestep_begin
[../]
[]
[VectorPostprocessors]
[./forces]
type = GrainForcesPostprocessor
grain_force = grain_force
[../]
[./grain_volumes]
type = FeatureVolumeVectorPostprocessor
flood_counter = grain_center
execute_on = 'initial timestep_begin'
[../]
[./angle_check]
type = EulerAngleUpdaterCheck
grain_tracker_object = grain_center
euler_angle_updater = euler_angle
grain_torques_object = grain_force
grain_volumes = grain_volumes
execute_on = timestep_begin
[../]
[]
[UserObjects]
[./grain_center]
type = GrainTracker
variable = eta
outputs = none
compute_var_to_feature_map = true
execute_on = 'initial timestep_begin'
[../]
[./grain_force]
type = ConstantGrainForceAndTorque
execute_on = 'initial timestep_begin linear nonlinear'
force = '0.5 0.0 0.0 '
torque = '-200.0 -120.0 1000.0'
[../]
[./euler_angle_initial]
type = RandomEulerAngleProvider
grain_tracker_object = grain_center
seed = 12356
execute_on = 'initial timestep_begin'
[../]
[./euler_angle]
type = EulerAngleUpdater
grain_tracker_object = grain_center
euler_angle_provider = euler_angle_initial
grain_torques_object = grain_force
grain_volumes = grain_volumes
execute_on = timestep_begin
[../]
[]
[Preconditioning]
[./SMP]
type = SMP
full = true
[../]
[]
[Executioner]
type = Transient
scheme = bdf2
solve_type = NEWTON
petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
petsc_options_value = 'asm 31 preonly lu 1'
nl_max_its = 30
l_max_its = 30
l_tol = 1.0e-4
nl_rel_tol = 1.0e-10
start_time = 0.0
dt = 0.2
num_steps = 2
[]
[Outputs]
csv = true
exodus = true
[]
[ICs]
[./rect_c]
y2 = 20.0
y1 = 5.0
z1 = 5.0
z2 = 20.0
inside = 1.0
x2 = 30.0
variable = c
x1 = 10.0
type = BoundingBoxIC
[../]
[./rect_eta]
y2 = 20.0
y1 = 5.0
inside = 1.0
x2 = 30.0
variable = eta
x1 = 10.0
z1 = 5.0
z2 = 20.0
type = BoundingBoxIC
[../]
[]